BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (66 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7FFJ0 UPF0253 protein YpsIP31758_1034 n=137 Tax=Gammap... 103 1e-21 UniRef50_D1RZF3 Putative cytoplasmic protein n=1 Tax=Serratia od... 103 2e-21 UniRef50_A7N1W2 UPF0253 protein VIBHAR_03255 n=54 Tax=Gammaprote... 79 5e-14 UniRef50_C1HQ11 Putative uncharacterized protein n=1 Tax=Escheri... 77 2e-13 UniRef50_A1SWW2 Putative uncharacterized protein n=2 Tax=Psychro... 62 4e-09 UniRef50_B7VIT4 UPF0253 protein VS_2370 n=6 Tax=Vibrionales RepI... 61 1e-08 >UniRef50_A7FFJ0 UPF0253 protein YpsIP31758_1034 n=137 Tax=Gammaproteobacteria RepID=Y1034_YERP3 Length = 66 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/66 (75%), Positives = 60/66 (90%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 M++YCEL+R+ YAEI SGDLGYVPDAL CVLK L+E+AA+DAL +VRE+AAYAAANLLV Sbjct: 1 MQQYCELVRRFYAEIGSGDLGYVPDALRCVLKALDEVAANDALPSSVREQAAYAAANLLV 60 Query: 61 SDYVNE 66 SDYV+E Sbjct: 61 SDYVDE 66 >UniRef50_D1RZF3 Putative cytoplasmic protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RZF3_SEROD Length = 76 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/66 (72%), Positives = 60/66 (90%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 +++YCEL+R+ YAEI SGDLGYVPDAL CVLK L+E+AAD+AL +VRE+AA+AAANLLV Sbjct: 11 VQQYCELVRRFYAEIGSGDLGYVPDALACVLKALDEVAADNALPSSVREQAAFAAANLLV 70 Query: 61 SDYVNE 66 SDYV+E Sbjct: 71 SDYVDE 76 >UniRef50_A7N1W2 UPF0253 protein VIBHAR_03255 n=54 Tax=Gammaproteobacteria RepID=Y3255_VIBHB Length = 68 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/59 (59%), Positives = 49/59 (83%) Query: 5 CELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLVSDY 63 CEL+R+ YA+I SGD YVP A+ C ++ LN++AAD++L + VREKAA+AAANLL+SD+ Sbjct: 7 CELVRELYAQIGSGDQAYVPQAISCAVRALNDVAADESLPKDVREKAAFAAANLLISDF 65 >UniRef50_C1HQ11 Putative uncharacterized protein n=1 Tax=Escherichia sp. 3_2_53FAA RepID=C1HQ11_9ESCH Length = 66 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/36 (97%), Positives = 36/36 (100%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNE 36 +EKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNE Sbjct: 7 VEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNE 42 >UniRef50_A1SWW2 Putative uncharacterized protein n=2 Tax=Psychromonas RepID=A1SWW2_PSYIN Length = 66 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 41/63 (65%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 M YCE +K I SG+ YVP A+ C + L+ +AA+ L E VRE+AAYAAANL + Sbjct: 1 MYHYCEKTKKLINLIGSGNAAYVPKAITCAINTLDRIAANKDLPENVREEAAYAAANLSL 60 Query: 61 SDY 63 SDY Sbjct: 61 SDY 63 >UniRef50_B7VIT4 UPF0253 protein VS_2370 n=6 Tax=Vibrionales RepID=Y2370_VIBSL Length = 67 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 49/59 (83%) Query: 5 CELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLVSDY 63 C+L+R+ Y++I SGD GY+P A+ C +K LN++AAD++L + R++AA+AAANLL+SD+ Sbjct: 7 CDLVRELYSQIGSGDQGYIPKAITCAVKTLNDLAADESLPKEARDRAAFAAANLLISDF 65 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D1RZF3 Putative cytoplasmic protein n=1 Tax=Serratia od... 99 3e-20 UniRef50_A7FFJ0 UPF0253 protein YpsIP31758_1034 n=137 Tax=Gammap... 97 1e-19 UniRef50_A1SWW2 Putative uncharacterized protein n=2 Tax=Psychro... 89 5e-17 UniRef50_A7N1W2 UPF0253 protein VIBHAR_03255 n=54 Tax=Gammaprote... 88 8e-17 UniRef50_B7VIT4 UPF0253 protein VS_2370 n=6 Tax=Vibrionales RepI... 77 2e-13 UniRef50_C1HQ11 Putative uncharacterized protein n=1 Tax=Escheri... 66 4e-10 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_D1RZF3 Putative cytoplasmic protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RZF3_SEROD Length = 76 Score = 99.3 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 48/66 (72%), Positives = 60/66 (90%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 +++YCEL+R+ YAEI SGDLGYVPDAL CVLK L+E+AAD+AL +VRE+AA+AAANLLV Sbjct: 11 VQQYCELVRRFYAEIGSGDLGYVPDALACVLKALDEVAADNALPSSVREQAAFAAANLLV 70 Query: 61 SDYVNE 66 SDYV+E Sbjct: 71 SDYVDE 76 >UniRef50_A7FFJ0 UPF0253 protein YpsIP31758_1034 n=137 Tax=Gammaproteobacteria RepID=Y1034_YERP3 Length = 66 Score = 97.4 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 50/66 (75%), Positives = 60/66 (90%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 M++YCEL+R+ YAEI SGDLGYVPDAL CVLK L+E+AA+DAL +VRE+AAYAAANLLV Sbjct: 1 MQQYCELVRRFYAEIGSGDLGYVPDALRCVLKALDEVAANDALPSSVREQAAYAAANLLV 60 Query: 61 SDYVNE 66 SDYV+E Sbjct: 61 SDYVDE 66 >UniRef50_A1SWW2 Putative uncharacterized protein n=2 Tax=Psychromonas RepID=A1SWW2_PSYIN Length = 66 Score = 88.9 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 43/66 (65%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 M YCE +K I SG+ YVP A+ C + L+ +AA+ L E VRE+AAYAAANL + Sbjct: 1 MYHYCEKTKKLINLIGSGNAAYVPKAITCAINTLDRIAANKDLPENVREEAAYAAANLSL 60 Query: 61 SDYVNE 66 SDY ++ Sbjct: 61 SDYKDD 66 >UniRef50_A7N1W2 UPF0253 protein VIBHAR_03255 n=54 Tax=Gammaproteobacteria RepID=Y3255_VIBHB Length = 68 Score = 88.1 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 35/66 (53%), Positives = 52/66 (78%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 + CEL+R+ YA+I SGD YVP A+ C ++ LN++AAD++L + VREKAA+AAANLL+ Sbjct: 3 VYGCCELVRELYAQIGSGDQAYVPQAISCAVRALNDVAADESLPKDVREKAAFAAANLLI 62 Query: 61 SDYVNE 66 SD+ ++ Sbjct: 63 SDFEDK 68 >UniRef50_B7VIT4 UPF0253 protein VS_2370 n=6 Tax=Vibrionales RepID=Y2370_VIBSL Length = 67 Score = 77.0 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 51/65 (78%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV 60 + C+L+R+ Y++I SGD GY+P A+ C +K LN++AAD++L + R++AA+AAANLL+ Sbjct: 3 VYDCCDLVRELYSQIGSGDQGYIPKAITCAVKTLNDLAADESLPKEARDRAAFAAANLLI 62 Query: 61 SDYVN 65 SD+ + Sbjct: 63 SDFED 67 >UniRef50_C1HQ11 Putative uncharacterized protein n=1 Tax=Escherichia sp. 3_2_53FAA RepID=C1HQ11_9ESCH Length = 66 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 35/36 (97%), Positives = 36/36 (100%) Query: 1 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNE 36 +EKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNE Sbjct: 7 VEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNE 42 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.318 0.139 0.388 Lambda K H 0.267 0.0426 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 249,813,362 Number of Sequences: 3077464 Number of extensions: 7217451 Number of successful extensions: 18102 Number of sequences better than 1.0e-01: 6 Number of HSP's better than 0.1 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18090 Number of HSP's gapped (non-prelim): 12 length of query: 66 length of database: 1,040,396,356 effective HSP length: 38 effective length of query: 28 effective length of database: 923,452,724 effective search space: 25856676272 effective search space used: 25856676272 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits)