100 c3merA_ Probab=98.52   E-value=3.2e-06  Score=57.90  Aligned_columns=110  Identities=21%

Q ss_pred             HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHH
Q ss_conf             99995047882599961568873379999999984432458759999988989998988069987897249989999740
Q batch____       106 LADHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQLQRYF  185 (286)
Q Consensus       106 L~~~ilp~~~~irIWSAgCStGEEpYSLAill~e~~~~~~~~~~I~atDis~~~L~~Ar~G~Y~~~~~r~~~~~~~~ryF  185 (286)
                      ....+++..++-||.-.||++|.-+--||          ..-.++.|+|++..+++.|++                    
T Consensus         5 ~l~~~~~~~p~~rVLDiGcG~G~~~~~La----------~~~~~v~~~d~~~~~~~~~~~--------------------   54 (173)
T c3merA_           5 FLVSVANQIPQGKILCLAEGEGRNACFLA----------SLGYEVTAVDQSSVGLAKAKQ--------------------   54 (173)
T ss_dssp             HHHHHGGGSCSSEEEEETCTTSHHHHHHH----------TTTCEEEEECSCHHHHHHHHH--------------------
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHH----------HHHCCCCCCCCCCCCCCCCCC--------------------
T ss_conf             99999730899759997579878999998----------630433322343221111222--------------------


Q ss_pred             HCCCCCCCCEEEECHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             036777678389877898017020024555567876672089976124439899999999999998289828998
Q batch____       186 MRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFA  260 (286)
Q Consensus       186 ~~~~~~~~~~~~v~~~ir~~v~F~~~NL~~~~~~~~~~~DlI~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l  260 (286)
                                   +..-.........+-....++....||+|+|.+++  +..+...+++..+++.|+|||+|++
T Consensus        55 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~--~~~~~~~~~~~~~~~~LkpgG~l~~  114 (173)
T c3merA_          55 -------------LAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCH--LPSSLRQQLYPKVYQGLKPGGVFIL  114 (173)
T ss_dssp             -------------HHHHHTCCCCCCCCCSTTCCCCTTCEEEEEEESCC--CCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             -------------22222222222222222222222223342025565--2400100111344431489738999