BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (457 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cell... 931 0.0 UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacter... 634 e-180 UniRef50_UPI000190E2D1 ATP-dependent RNA helicase DbpA n=3 Tax=S... 536 e-151 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 499 e-140 UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina lo... 449 e-125 UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 446 e-124 UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteob... 442 e-122 UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 405 e-111 UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfur... 392 e-107 UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobact... 387 e-106 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 385 e-105 UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromo... 370 e-101 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 322 1e-86 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 316 1e-84 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 315 2e-84 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 313 7e-84 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 313 9e-84 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 309 1e-82 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 309 1e-82 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 308 2e-82 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 308 3e-82 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 306 1e-81 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 301 2e-80 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 301 2e-80 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 300 8e-80 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 299 1e-79 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 298 2e-79 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 298 3e-79 UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 297 7e-79 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 294 4e-78 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 293 1e-77 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 293 1e-77 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 293 1e-77 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 293 1e-77 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 291 3e-77 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 290 9e-77 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 288 2e-76 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 288 3e-76 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 288 3e-76 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 287 6e-76 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 286 9e-76 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 286 1e-75 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 285 2e-75 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 285 2e-75 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 285 2e-75 UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase ... 284 5e-75 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 283 8e-75 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 283 9e-75 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 283 1e-74 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 283 1e-74 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 281 4e-74 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 280 7e-74 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 280 9e-74 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 280 9e-74 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 280 1e-73 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 279 1e-73 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 279 2e-73 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 278 2e-73 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 278 2e-73 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 278 3e-73 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 278 4e-73 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 278 4e-73 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 277 6e-73 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 277 6e-73 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 276 9e-73 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 276 1e-72 UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostrid... 276 1e-72 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 276 1e-72 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 276 1e-72 UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomyceta... 275 2e-72 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 275 4e-72 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 275 4e-72 UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacte... 274 4e-72 UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing ... 273 1e-71 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 272 2e-71 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 272 2e-71 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 272 2e-71 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 272 2e-71 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 272 2e-71 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 271 3e-71 UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 271 3e-71 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 270 1e-70 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 270 1e-70 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 269 1e-70 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 269 1e-70 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 269 2e-70 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 269 2e-70 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 268 2e-70 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 268 3e-70 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 268 3e-70 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 268 4e-70 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 267 5e-70 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 267 6e-70 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 267 6e-70 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 267 6e-70 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 266 8e-70 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 266 1e-69 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 266 1e-69 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 266 2e-69 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 265 2e-69 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 264 5e-69 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 263 8e-69 UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum '... 263 9e-69 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 263 1e-68 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 263 1e-68 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 263 1e-68 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 263 1e-68 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 263 1e-68 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 263 1e-68 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 262 2e-68 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 262 2e-68 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 262 2e-68 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 262 2e-68 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 261 3e-68 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 261 3e-68 UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6... 261 3e-68 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 260 7e-68 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 260 8e-68 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 259 1e-67 UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium d... 259 1e-67 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 259 2e-67 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 259 2e-67 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 258 3e-67 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 258 3e-67 UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root Rep... 258 3e-67 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 258 3e-67 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 258 3e-67 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 258 3e-67 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 258 4e-67 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 258 4e-67 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 258 4e-67 UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bactero... 258 4e-67 UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 257 5e-67 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 257 6e-67 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 257 6e-67 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 257 6e-67 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 257 7e-67 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 257 8e-67 UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 ... 256 1e-66 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 256 1e-66 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 256 1e-66 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 256 1e-66 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 256 1e-66 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 256 1e-66 UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gamm... 255 2e-66 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 255 3e-66 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 255 3e-66 UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiother... 254 3e-66 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 254 4e-66 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 254 4e-66 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 254 4e-66 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 254 4e-66 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 254 5e-66 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 254 6e-66 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 254 7e-66 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 253 7e-66 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 253 8e-66 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 253 9e-66 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 253 1e-65 UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lent... 253 1e-65 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 253 1e-65 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 252 2e-65 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 252 2e-65 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 252 3e-65 UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 251 4e-65 UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=G... 251 5e-65 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 250 6e-65 UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema Rep... 250 6e-65 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 250 7e-65 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 250 7e-65 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 250 8e-65 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 250 9e-65 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 250 9e-65 UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 249 1e-64 UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micr... 249 1e-64 UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 249 1e-64 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 249 1e-64 UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialiste... 249 2e-64 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 249 2e-64 UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 ... 249 2e-64 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 249 2e-64 UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 ... 249 2e-64 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 249 2e-64 UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillone... 248 2e-64 UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidale... 248 3e-64 UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 248 3e-64 UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostri... 248 3e-64 UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickett... 248 4e-64 UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdema... 248 5e-64 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 247 5e-64 UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 247 5e-64 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 247 6e-64 UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella ma... 247 6e-64 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 247 6e-64 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 247 7e-64 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 246 1e-63 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 246 1e-63 UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 246 1e-63 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 246 1e-63 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 246 1e-63 UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family... 246 2e-63 UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 245 2e-63 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 245 2e-63 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 245 2e-63 UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacte... 244 3e-63 UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=De... 244 4e-63 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 244 4e-63 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 244 6e-63 UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=B... 244 7e-63 UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pu... 244 7e-63 UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales ... 243 7e-63 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 243 9e-63 UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminoco... 243 9e-63 UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudom... 243 1e-62 UniRef50_A2U1Q9 DEAD/DEAH box helicase n=6 Tax=Bacteria RepID=A2... 243 1e-62 UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aq... 243 1e-62 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 243 1e-62 UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincent... 243 1e-62 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 243 1e-62 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 242 2e-62 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 242 2e-62 UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12U... 242 2e-62 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 242 2e-62 UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gl... 242 2e-62 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 242 2e-62 UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Prop... 242 2e-62 UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 241 4e-62 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 241 5e-62 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 241 5e-62 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 241 5e-62 UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family... 240 7e-62 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 240 8e-62 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 240 8e-62 UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=A... 240 8e-62 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 240 8e-62 UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Ve... 239 1e-61 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 239 1e-61 UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=A... 239 1e-61 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 239 1e-61 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 239 1e-61 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 239 1e-61 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 238 2e-61 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 238 3e-61 UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=De... 238 3e-61 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 238 3e-61 UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 238 5e-61 UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacter... 238 5e-61 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 237 6e-61 UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Ac... 237 6e-61 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 237 6e-61 >UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cellular organisms RepID=DBPA_ECOLI Length = 457 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/457 (100%), Positives = 457/457 (100%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG Sbjct: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ Sbjct: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ Sbjct: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV Sbjct: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML Sbjct: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV Sbjct: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK Sbjct: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 >UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacteriaceae RepID=A1JLM2_YERE8 Length = 460 Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust. Identities = 314/459 (68%), Positives = 363/459 (79%), Gaps = 5/459 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T+FS+L LP QL+NLNELGY MTPVQAAALPAIL G+DVR +AKTGSGKTAAFG+GL Sbjct: 4 TSFSSLT-LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGL 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +I F TQALVLCPTRELADQV+ ELRRLARF N KILTLCGGQP G Q DSL H Sbjct: 63 LDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 APHI+V TPGR+ +HL+K T+ LD L LV+DEADRMLDMGF+DAIDDVI + P RQTL Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 LFSAT+P I IS RVQR P+ +E+D D P IEQ F+ET+ + ++PLL +LS +QP Sbjct: 183 LFSATYPAGIEQISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQP 242 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +SCVVFCNTKKDCQ+V +AL G S L+LHGDLEQRDRDQ LVRFAN S RVLVATDVA Sbjct: 243 ASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVA 302 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDIK LELVVNFELA+DPEVHVHRIGRT RAG SGLA+S C P+E RA+ I D LQ Sbjct: 303 ARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQ 362 Query: 362 IKLNWQTPP---ANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 +KL W TP + S+ LE EM TLCIDGG+KAK+RP D+LGALTG+ GL AD+GKI Sbjct: 363 MKLKW-TPAEQVSRSANTLLEPEMVTLCIDGGRKAKIRPSDILGALTGEAGLTAADVGKI 421 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + P H YVA+R+A A +A +QLQ GKIKGK C+ RLLK Sbjct: 422 DMFPVHAYVAIRKASAKRALQQLQQGKIKGKNCKARLLK 460 >UniRef50_UPI000190E2D1 ATP-dependent RNA helicase DbpA n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190E2D1 Length = 299 Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/299 (85%), Positives = 276/299 (92%) Query: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218 +DMGFSDAID+VIRFAPA+RQTLLFSATWPEAIAAISGRVQ+ P+ IEID+ DALP IEQ Sbjct: 1 MDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQ 60 Query: 219 QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR 278 QF+ETS+ KI LLQ LLS HQP+SCVVFCNTKKDCQAVCDALN VGQSAL+LHGDLEQR Sbjct: 61 QFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQR 120 Query: 279 DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNS 338 DRDQTLVRFANGSAR+LVATDVAARGLDIKSLELVVN+ELAWDPEVHVHRIGRTARAG+S Sbjct: 121 DRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSS 180 Query: 339 GLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 GLAISFCAPEEAQRANI+S+MLQ+KLNW PA + L AEMATLCIDGGKKAKMRPG Sbjct: 181 GLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLAAEMATLCIDGGKKAKMRPG 240 Query: 399 DVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 D+LGALTGDIGLDGADIGKI VHP HVYVAVRQAVA KAWKQLQ GKIKGK+CRVRLLK Sbjct: 241 DILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKSCRVRLLK 299 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust. Identities = 254/459 (55%), Positives = 319/459 (69%), Gaps = 4/459 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T+FS+L+ L P+ L NL LGY MTP+QA +LP +L GKDV Q KTGSGKTAAFGLGL Sbjct: 4 TSFSSLD-LHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGL 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L ++ F+ Q+LVLCPTRELADQVA E+R+LAR + N K+LTLCGG PFG Q SL+H Sbjct: 63 LANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HIIV TPGR+ +HL+KG ++LD LNT V+DEADRML+MGF DAID V+ AP RQ L Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNL 182 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSLHQ 240 LFSAT+P I +I+ R+ DP+ + + T I Q F++ + ++ LQ LL HQ Sbjct: 183 LFSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQ 242 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P S V+FCNTK+ Q V D L S +LHGDLEQRDRD+ LVRFAN S +LVATDV Sbjct: 243 PESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDV 302 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI+SL+ VVNFEL+ DPEVHVHRIGRT RAGN G+A+S +E I + + Sbjct: 303 AARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYM 362 Query: 361 QIKLNWQTPPANSSIA--TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 I + + P+ + AEM TL IDGGKK K+RPGD+LGALTG G++G +GKI Sbjct: 363 NIDIRDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVGKI 422 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 V H YVAV VA A K+L+ GK+KG++ RV ++ Sbjct: 423 NVFDFHAYVAVHNTVAKAALKKLESGKMKGRSFRVSRMR 461 >UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QWG1_IDILO Length = 474 Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust. Identities = 225/453 (49%), Positives = 308/453 (67%), Gaps = 1/453 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN LPPA LT L+E+GY MTPVQ+ +LP IL D V+A TGSGKT AF L LL Sbjct: 23 FNQLN-LPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLA 81 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +++A F QALVLCPTRELA QVA E+R+LA+ + N KILTLCGG+P +Q +SL+H Sbjct: 82 KLEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGA 141 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H++V TPGR+LDHL++ V L L TLV+DEADRML+MGF D+++ +++ P +RQTLLF Sbjct: 142 HVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQTLLF 201 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+P+ IAA++ +V IE A P IEQ FY +++ L+ LL HQP + Sbjct: 202 SATYPKNIAALAEQVTTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLVMNLLGDHQPEN 261 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 C+VFCNTK + + + + L S L+LHG+LEQ+DRDQ +++F+NGSARVL+ATDVA+R Sbjct: 262 CLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIATDVASR 321 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 GLDI L+LV++ +A D + H HRIGRT RAG G+AI+ A ++ + ++ D Sbjct: 322 GLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRLLEDTFAEP 381 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 + + PA S+ L+A M+T+ + GGKK K+RPGD++GALT D L DIGKI + Sbjct: 382 IQVKPAPALSNNRPLKANMSTIQVSGGKKDKLRPGDIVGALTKDNVLSADDIGKIKLEST 441 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 +VAV +A A + KIKGK R ++L Sbjct: 442 FGFVAVNSRLAKHALGLINNNKIKGKKFRAKVL 474 >UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=A6VVX6_MARMS Length = 438 Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/438 (49%), Positives = 298/438 (68%), Gaps = 1/438 (0%) Query: 21 LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80 +G+ T TP+Q +LP ++ GKD+ QA+TGSGKT AF + LL +I+ F QALV+CPT Sbjct: 1 MGFTTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIALLLKINPRFFGVQALVMCPT 60 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELADQV+ E+R++AR+ N K+L+LCGG PFG Q SL+H HI+V TPGRL++HL+KG Sbjct: 61 RELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGRLMEHLRKG 120 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 T+ L+ALNTLV+DEADRMLDMGF D+I +++ P++RQTLLFSAT+ + I AIS Q Sbjct: 121 TLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAISKEFQS 180 Query: 201 DPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 P++I++++ + L P IEQ F + +K K L L +P +VFCNTK + Q V D Sbjct: 181 TPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFCNTKAESQVVAD 240 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 L+E +A ++HGDLEQR RDQ LVRF+N S+ VLVATDVAARG+D+K ++LVVN++ Sbjct: 241 WLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLVVNYDTT 300 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLE 379 D +VH HRIGRT RAG +G+A++ ++ + I I N+ A L Sbjct: 301 RDTDVHTHRIGRTGRAGAAGIAVNLVTSKDDYKVRDIESRFNITANFIELEAIDPHYRLI 360 Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 + T+ D G+K K+RPGD+LGALT +GLD + +GKI + H YV+V VA K Sbjct: 361 PQKTTISFDAGRKNKLRPGDILGALTAGLGLDKSQVGKIDIFDFHAYVSVDNEVAKTVVK 420 Query: 440 QLQGGKIKGKTCRVRLLK 457 + + KIKGK R R+L+ Sbjct: 421 EFENKKIKGKNIRARILR 438 >UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteobacteria RepID=B2SHR4_XANOP Length = 458 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 238/456 (52%), Positives = 301/456 (66%), Gaps = 4/456 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M FS L L PA ++ LGY +TPVQA +LP IL G DV QA TGSGKTAAFGLG Sbjct: 1 MNEFSALP-LSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLG 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQ++D +L + QALVLCPTRELADQV +LR+LA +PN K++ L GG P G Q SL+ Sbjct: 60 LLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 -HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 H PH++V TPGR+ + +K + L + TLV+DEADRMLDMGF + I ++ RQ Sbjct: 120 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LLFSAT+P+ I ++ + +DP+ I ++ D P I+QQF+E + + LL Sbjct: 180 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRF 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P S VVFCNT+K+ V +L E G SAL+LHGD+EQRDRD+ LVRF N S VLVA+D Sbjct: 240 TPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ L VVN+EL D E + HRIGRTARAG GLA+S AP E RA + Sbjct: 300 VAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQALEAE 359 Query: 360 LQIKLNW-QTPPANSSIATL-EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 L W + P A + A L +A M TL IDGGK K+R GD+LGALTG+ GL GA IGK Sbjct: 360 QGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGK 419 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 IA++P YVA+ +A KA L GKIKG+ RV Sbjct: 420 IAIYPTRSYVAIARAQVAKALAHLHAGKIKGRRFRV 455 >UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B113_SULD5 Length = 463 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/447 (47%), Positives = 282/447 (63%), Gaps = 9/447 (2%) Query: 13 AQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQT 72 A L L LGY MTP+Q A+LP IL G+D+ +AKTGSGKT AFGL LL + + Sbjct: 16 AMLETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLALHVKQMRI 75 Query: 73 QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGR 132 Q++VLCPTRELA+QV+ ELR+LA F N KI+TLCGG F Q SL+H HI+V TPGR Sbjct: 76 QSVVLCPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEHGAHIVVGTPGR 135 Query: 133 LLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIA 192 +L HLQ+ T++ + + TLV+DEADRMLDMGF + I+ +I P RQTLLFSAT+P I Sbjct: 136 ILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLLFSATFPREIE 195 Query: 193 AISGRVQRDPLAIEIDSTDALPP--IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 + VQ++ L I ++ P I Q + + K L+ L P S ++FC T Sbjct: 196 QMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLNEMPKSVIIFCKT 255 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 K A+ +L E G AL LHGDLEQ RD+ L+ FANGSA++LVATD+AARGLDIK + Sbjct: 256 KVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATDLAARGLDIKDV 315 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPP 370 E+V+N+EL E++ HRIGRT R G G AISF P E + + ++ ++ + Sbjct: 316 EMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTPSE---ESFLHELERVGFAFTCKD 372 Query: 371 ANS----SIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVY 426 A + AE TLCIDGGKK K+R GD+LG LT DIGL+G+ IGKI + + Y Sbjct: 373 AREILPLHVKPKRAEFITLCIDGGKKQKVRAGDILGVLTKDIGLEGSLIGKIDILEKYAY 432 Query: 427 VAVRQAVAHKAWKQLQGGKIKGKTCRV 453 VA+++ A KA+ L IK + ++ Sbjct: 433 VAIKREYADKAFNGLCATTIKNRRFKI 459 >UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC93_SULNB Length = 453 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/444 (44%), Positives = 287/444 (64%), Gaps = 10/444 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MTAF+T+ +P A L L LG+ TMT +Q ++ IL GKD+ Q+KTGSGKT AFG+ Sbjct: 1 MTAFNTIPNIPEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIP 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + D + Q +V+ PTRELA+QVA ELR++A + N KILTL GG P Q DSL Sbjct: 61 AVMGTDVKSNKPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLA 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI++ TPGR+ DHL KGT++L+++ TLV+DEADRMLDMGF + I + P +QT Sbjct: 121 KGAHILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LLFSAT+P I +++ + +DPL I++D+ I + YET K K L L+ ++ Sbjct: 181 LLFSATFPPKIESLAKALLKDPLTIKVDTVQEAMKINELVYETPDKFKT--LNALIGSYK 238 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P S ++FCNTK + ++ D L + G S + +HGDL+QR+R++ ++ F+N S R++VATDV Sbjct: 239 PDSLLIFCNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDV 298 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 A+RGLDIK + LV+N++L +D EV+ HRIGRT RA +G+AIS AP ++++ + I+ Sbjct: 299 ASRGLDIKDISLVINYDLPFDKEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITSQA 358 Query: 361 QIKLNWQTPPANSSI---ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 + Q P + + + +E T+C++GGKK K+R GD+LG +IG+D +IGK Sbjct: 359 K-----QADPKDLRVDANFKMLSEFDTICLNGGKKTKLRAGDILGTFCKEIGIDNTEIGK 413 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQL 441 I + Y+A+ V K K L Sbjct: 414 IIITDTKAYIALHHTVVDKVLKAL 437 >UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EV19_ARCB4 Length = 454 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 5/448 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS LN L L NL+ L Y T+T +Q +P L KD+ +AKTGSGKT AF L ++ Sbjct: 3 FSELN-LSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIVN 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++ A F+ QAL+L PTRELA+Q+A LR L+R + N K+LTLCGG PF Q SLQH Sbjct: 62 KLKAKEFKIQALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSLQHNA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+VATPGR+L H+++ ++L+ ++T V+DEAD+MLDMGF D I ++I P +RQT+LF Sbjct: 122 HIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTMLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT+ + I + + ++P+ EI D + L I Q+FYE + K L+ L+S +Q Sbjct: 182 SATYEKNIETFASNILKNPIYKEISDEKEIL--INQKFYEVTPSEKTALIPALISHNQAK 239 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++FCN K C+ + D L ++G L+LH DLEQ+ RD+T+V F+N S +L+ATDVA+ Sbjct: 240 TTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDVAS 299 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML-Q 361 RGL I ++LV+N++L+ D ++H HRIGRTARAG GLAIS E + II + Sbjct: 300 RGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKEKFNN 359 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVH 421 IK+ + + + T+ I+GGKK K+R GD+LGAL + GL DIGKI V Sbjct: 360 IKIENPKDIKDDISFEINSNFRTVFINGGKKQKLRKGDILGALISEAGLKSDDIGKIDVM 419 Query: 422 PAHVYVAVRQAVAHKAWKQLQGGKIKGK 449 Y AV+ + + +IKGK Sbjct: 420 DFCSYAAVKSDKISNIFSTSKSMRIKGK 447 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/460 (45%), Positives = 295/460 (64%), Gaps = 7/460 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L + PP L L EL + T TP+QA ++P +L G+D+ QA+TGSGKTAAF L LLQ Sbjct: 3 FSALALSPPL-LQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQ 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++ + QALVLCPTREL QVAGE+RRL R LP ++L L GGQP Q ++L+ Sbjct: 62 KVQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+ V TPGR++D L + + L+T+V+DEADRMLDMGF + ++ ++ P RQT+LF Sbjct: 122 HLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+P I A+S QR P+ + +++ A P I+Q Y+ K LL R+L +QP+S Sbjct: 182 SATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQVRYDCEPGDKQALLLRILRHYQPAS 241 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 +VFCN K + +L+ G S L GDLEQ +RD+ + +F N S RVL+ATDVA R Sbjct: 242 AIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGR 301 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 G+D+++L+ V+NF+L E +VHRIGRT RAG +GLA+S P + ++ + I +K Sbjct: 302 GIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDDIQLATGVK 361 Query: 364 LNW----QTPPANSSIA-TLEAEMATLCIDGGKKAKMRPGDVLGALTGDI-GLDGADIGK 417 L P A+ A +LE+ TL I G+K KMRPGD+LGALTG+ GL+ D+GK Sbjct: 362 LERGDVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGALTGEAGGLEATDVGK 421 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 I + YVAV + V+ A+++L G+IKG+ ++ +K Sbjct: 422 IEIQDHVAYVAVARRVSRVAFQRLSEGRIKGRRYKIERVK 461 >UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromonadales RepID=B4RRN6_ALTMD Length = 459 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/450 (44%), Positives = 276/450 (61%), Gaps = 4/450 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 + PA L+ G ++P+QA +LP L GKDV QA+TGSGKT F + L++I+ + Sbjct: 11 INPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPALEKIEVND 70 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 F TQA++LCPTRELA+QVA + R A+ + N K+ TLCGGQP G Q SL+H+PHIIV T Sbjct: 71 FSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKHSPHIIVGT 130 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DH++K + L + V+DEADRMLDMGF D + + P QTLLFSAT+ E Sbjct: 131 PGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFSATFTE 190 Query: 190 AIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 I ++ + +P+ +++S + P I Q Y + L+ +L+ +QP + +VFCN Sbjct: 191 QIERVAKQYLHNPVTCKVESQENKPAITQLGYNVLPHTRTQALKAVLTEYQPKNAIVFCN 250 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 K V D L E G SA L GD+EQ R L++FA+ S +VLVATDVAARGLDI Sbjct: 251 RKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTSVLMQFASDSLQVLVATDVAARGLDIDD 310 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ---IKLNW 366 + V+N+ ++ +PE H+HRIGRTARAG G+AI+ + EE I ++LQ I L Sbjct: 311 VACVINYTVSEEPETHIHRIGRTARAGAKGMAITLVSEEEEHFLRKI-EVLQESDIPLKG 369 Query: 367 QTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVY 426 + E + + GKK K+RPGD++GALT D G+ G D+GKI V + + Sbjct: 370 AQSLRFHKNKITQPEFTCISLSAGKKEKLRPGDLVGALTKDAGIPGDDLGKIKVQNSMSF 429 Query: 427 VAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 VAV+ KA Q + GKIKGK R R L Sbjct: 430 VAVKTRSVKKAMTQFREGKIKGKRIRARKL 459 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 157/365 (43%), Positives = 236/365 (64%), Gaps = 1/365 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 + E+G+ +P+QA A+P + G+D+ QA+TG+GKTAAFG+ LLQ++D + + QA++L Sbjct: 19 ITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQKVDPKVKKLQAIIL 78 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QVA E+RRLA+F+ TK+L + GGQ Q SL+ I+V TPGR++DH+ Sbjct: 79 LPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKDGTQIVVGTPGRVMDHM 138 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 ++ TV +D ++T+V+DEAD ML+MGF + ++ ++ P RQTL+FSAT P+AIA I+ + Sbjct: 139 RRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMPQAIADIARK 198 Query: 198 VQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 Q DP+ + + + +P + Q +YE K K+ ++ RLL ++ P +VFCNTK+ Sbjct: 199 FQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKLSIVFCNTKRQVDE 258 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + AL G A LHGDL+Q RD+ + F NG +LVATDVAARG+D+ +E V N+ Sbjct: 259 LVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAARGIDVGDVEAVFNY 318 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIA 376 ++ D E +VHRIGRT RAG G A S +E + I + K+ Q P+ + I Sbjct: 319 DVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCKTKIIPQAIPSLNDIT 378 Query: 377 TLEAE 381 ++ E Sbjct: 379 EIKVE 383 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 43/75 (57%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 + +MA L I+ GK ++ PGD+LGA+ G+ G+ G +G I ++ + +V V A + Sbjct: 490 DGQMARLFINIGKAQRVTPGDILGAVAGESGIPGRMVGSIDMYDGYTFVDVPGQYADEVL 549 Query: 439 KQLQGGKIKGKTCRV 453 K + KIKG+ V Sbjct: 550 KAMSHAKIKGRNVHV 564 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 152/369 (41%), Positives = 236/369 (63%), Gaps = 1/369 (0%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L + ++G+ TP+QA A+P IL GKDV QA+TG+GKTAAFG+ +++++D QA Sbjct: 17 LQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQA 76 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 LVL PTRELA Q A E RL ++ ++ + GGQP Q +L+ +++ TPGR++ Sbjct: 77 LVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKGTVQVVIGTPGRVI 136 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 DH+++GT+ LD++ ++DEAD+MLDMGF + I+D+ R P RQT+LFSAT P+ I I Sbjct: 137 DHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQPILDI 196 Query: 195 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 + R QRDP ++I + +P IEQ + E + K+ L R L ++ P +VFCNTK+ Sbjct: 197 TRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELALVFCNTKRT 256 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 + + G +LHGD++Q+ RD+ + RF +GS VL+ATDVAARG+D+ +++V Sbjct: 257 VDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGIDVDDVDIV 316 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 373 N+++ D E +VHRIGRTARAG +G +++F AP E + I +I++ P Sbjct: 317 FNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRYAKIQIAKTPLPTLD 376 Query: 374 SIATLEAEM 382 +A ++ ++ Sbjct: 377 DVAEMKQQI 385 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/359 (42%), Positives = 230/359 (64%), Gaps = 1/359 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 L EL ++ TP+QA +P I+ G DV QA+TG+GKT AFG+ ++++ID L +TQ+L+L Sbjct: 18 LQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIEKIDYKLSKTQSLIL 77 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 CPTREL QV EL++L R+ P +I + GG+ + Q +L+ PH+I+ATPGR++DH+ Sbjct: 78 CPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALESKPHLIIATPGRVIDHI 137 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 ++G + L AL L +DEAD ML MGF +A++ +++ P RQT+LFSAT P +I I+ + Sbjct: 138 ERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTVLFSATLPPSIKQIASK 197 Query: 198 VQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 Q++ +++ A+ IEQ ++ K LL RLL L + S ++F NTKKD Sbjct: 198 YQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDYSTILFANTKKDVDE 257 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + L + G A ++HGDL+Q R + F G ++L+ATDVAARG+DI +++VVN+ Sbjct: 258 ITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGIDISDIKMVVNY 317 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSI 375 +L + EV+VHRIGRT RAG GLA SF +P + + + L+ K+ + P+ I Sbjct: 318 DLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKEKVKFLEIPSVEEI 376 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 313 bits (803), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 165/354 (46%), Positives = 230/354 (64%), Gaps = 9/354 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L + P A L L ELGY TP+Q A+P +L G+D+ QA TG+GKTAAF L LL Sbjct: 9 SFAALGIAP-ALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLL 67 Query: 63 QQIDASLFQT---QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 Q+++ +ALVL PTRELA QVA + R R L ++L++ GGQPFG Q +L Sbjct: 68 QRLEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRL-GVQVLSVYGGQPFGQQLRAL 126 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + H++VATPGR LDH+ +GT++LD + T+V+DEAD MLDMGF++A+++++ P +RQ Sbjct: 127 RRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQ 186 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA----LPPIEQQFYETSSKGKIPLLQRL 235 T+LFSAT P IAAI+GR R+P+ ++I A LP + Q Y K L R+ Sbjct: 187 TVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRV 246 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L + PSS ++FC T+ + + +AL G A +LHG Q RD+ + RF G+A +L Sbjct: 247 LDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELL 306 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 VATDVAARGLDI+ + V+N+++ PEV+VHRIGRT RAG G AI+ P E Sbjct: 307 VATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPRE 360 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 38/76 (50%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 + +A L + G+ A +RP D++GA+ + L DIG I + V V A Sbjct: 496 DGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIADGFSTVEVPADAADAVI 555 Query: 439 KQLQGGKIKGKTCRVR 454 + L+ ++KG+ +VR Sbjct: 556 EALRATRLKGRKVQVR 571 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 313 bits (802), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 150/345 (43%), Positives = 222/345 (64%), Gaps = 2/345 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L +L ++ L +LG+ TP+Q A+P ++ G D+ QA+TG+GKT AFG+ +++ Sbjct: 5 FNDLPILDTTKVA-LEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVE 63 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 + D SL QTQ L+L PTREL +QV E+ +L +F P ++ T+ GG+ + Q L P Sbjct: 64 KTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDRKP 123 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HIIVATPGR++DH+ +GTV L + TL +DEAD ML MGF D I+ +++ P +RQT+LF Sbjct: 124 HIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLF 183 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I I+ Q++P I+I++ + I Q ++ K K LL+RLL PS Sbjct: 184 SATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFENPS 243 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++F NTK + ++L + G +A +LHGDL+Q R + RF + +LVATDVAA Sbjct: 244 TAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATDVAA 303 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP 347 RGLD+ +E++VN++L E++VHRIGRT RAG G A +F P Sbjct: 304 RGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTP 348 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/379 (43%), Positives = 237/379 (62%), Gaps = 2/379 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F LN+ P Q + ++G+ +P+Q+ A+P ILA KDV QA+TG+GKTAAFG+ LL+ Sbjct: 6 FKDLNISPEIQKA-VADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLE 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID+ QA++LCPTRELA QVA ELR+L+ +LP +L + GGQP Q +LQ Sbjct: 65 NIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKGV 124 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 II+ TPGR++DH+ +GT+SL+ + T+++DEAD MLDMGF + I+ ++ P RQ LLF Sbjct: 125 QIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLLF 184 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ I ++ R Q +P +++ + P +EQ+++E K+ LL RLL LH Sbjct: 185 SATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDFD 244 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFCNTK+ + L G A LHGDL Q RD+ + +F G+ +LVATDVAA Sbjct: 245 LSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVAA 304 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ +E V NF++ D E +VHRIGRT RAG +G A SF + E + I + Sbjct: 305 RGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAKT 364 Query: 363 KLNWQTPPANSSIATLEAE 381 K+ PA S + ++ + Sbjct: 365 KIEQAPIPALSDVEEVKKD 383 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 174/462 (37%), Positives = 256/462 (55%), Gaps = 24/462 (5%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L ++ LGY T VQ +PA+L+GK++ VQ++TGSGKTA+FG+ + Q++ + Q Sbjct: 15 LKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPICHQVEWKKRKPQV 74 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 LVL PTRELA Q+ +L L RF K+ L G F Q L+ HI+VATPGRLL Sbjct: 75 LVLAPTRELAIQIQEDLFNLGRF-KRLKVEALFGRSSFEKQAQRLKEMTHILVATPGRLL 133 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 DH+ + TV L + TLV+DEAD M +MGF D I +I P Q LLFSAT PE + + Sbjct: 134 DHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLLFSATMPERVKDL 193 Query: 195 SGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 ++P I+I++ + I++++Y K+ LL+ +L P S ++FCNTK+ Sbjct: 194 CTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITENPDSSIIFCNTKEQ 253 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 ++V + + ++G +LHG +EQR R + L F +G R LVATDVAARGLDI + LV Sbjct: 254 VESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATDVAARGLDIDDVSLV 313 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 373 VNF++ + E + HR+GRTAR G A++F +P E + N+I + +L P S Sbjct: 314 VNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIINDTDHELQKVVKPGQS 373 Query: 374 SI----------------------ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 + + E+ + I+ GKK KMRP DV+GAL G++ Sbjct: 374 LVDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKKTKMRPVDVVGALCSIEGMN 433 Query: 412 GADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 DIG I++ +V + L+ IKG+ +V Sbjct: 434 AEDIGVISIVDVSTFVEILNGKGDLVLNALKTMPIKGRPRKV 475 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 225/362 (62%), Gaps = 1/362 (0%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L L E+G+ +P+QA +PA+L G DV QA+TG+GKTAAFG+ +L++ID S QA Sbjct: 19 LKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLERIDTSSNAVQA 78 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 L+LCPTRELA QV+ EL RL++F+ +I + GG Q SL+ HI+V TPGR++ Sbjct: 79 LILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKKGVHIVVGTPGRVM 138 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 DH+++ T+ D + +V+DEAD MLDMGF + I+ ++ P RQT+LFSAT + I +I Sbjct: 139 DHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTILFSATMSKPIMSI 198 Query: 195 SGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 + R DP I++ + IEQ ++E + K+ ++ RL+ +H S +VFCNTK+ Sbjct: 199 TKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHIKSLLVFCNTKRK 258 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 + + L G ++ +HGDL Q+ R + +F G +LVATDVAARG+D+ L+ V Sbjct: 259 VDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDVAARGIDVSGLDGV 318 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 373 +N+++ D E +VHRIGRT RAG SG A S A +E R I ++K+ P+ Sbjct: 319 INYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYTKVKIEKGVIPSFE 378 Query: 374 SI 375 I Sbjct: 379 DI 380 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 EA M L + G+K + P D++GA+ G+ + G IG I ++ +V V + A Sbjct: 512 EAGMTRLFLSLGRKDHIMPKDIVGAIAGEANIPGKTIGAIDIYDKFTFVDVPERDARAVL 571 Query: 439 KQLQGGKIKGKTCRVRLLK 457 + + G IKGK ++ + K Sbjct: 572 RAMDGNTIKGKPVQIDIAK 590 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/382 (42%), Positives = 238/382 (62%), Gaps = 5/382 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F LN L L L E+G+ +P+Q A+P L G+D+ QA+TG+GKTAAFG+ Sbjct: 18 ITSFEDLN-LDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIP 76 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+I+ QALV+ PTREL QVA E+ ++ + ++L + GGQP Q SL+ Sbjct: 77 IIQKINEKDRHIQALVMSPTRELCIQVADEISKIGK-TKRIRVLPVYGGQPIERQIRSLK 135 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +++ TPGRLLDH+++GT+ L+ +N LV+DEAD MLDMGF D ++++I+ P RQT Sbjct: 136 RGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQT 195 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P I +IS + R P + I P I+Q +YET + K+ L R+L Sbjct: 196 MLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYET--RDKVDGLCRILDTT 253 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TKK + AL G A LHGDL Q RD+ + +F +G +LVATD Sbjct: 254 DDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATD 313 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI ++ VVNF++ D E +VHRIGRT RAGN+G+A++F P E ++ +I Sbjct: 314 VAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERS 373 Query: 360 LQIKLNWQTPPANSSIATLEAE 381 ++ K+ T P ++S+ + E Sbjct: 374 IKTKIIRGTLPTDASVLERQRE 395 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 232/373 (62%), Gaps = 2/373 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS+L + P L + ++G+++ +P+QA A+P IL G+DV QA+TG+GKTAAFG+ L Sbjct: 33 FSSL-AISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALD 91 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID Q L+LCPTRELA QVA E+++LA++ +I + GG Q SL+ Sbjct: 92 LIDVQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGV 151 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI++ TPGR++DH+++ T+ L+ + +++DEAD MLDMGF + I+ ++ P RQT+LF Sbjct: 152 HIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILF 211 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT + I I+ + Q+DP+ +++ + IEQ ++E SK K+ ++ RL+ ++ Sbjct: 212 SATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLK 271 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFCNTK+ + + L G A LHGDL Q R+ + +F G+ +LVATDVAA Sbjct: 272 LLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAA 331 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ ++ V+NF++ D E +VHRIGRT RAG SG A SF +E R I ++ Sbjct: 332 RGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKV 391 Query: 363 KLNWQTPPANSSI 375 K+ P+ I Sbjct: 392 KVEKGVIPSFEDI 404 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 44/79 (55%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 EA M L + G+K +RPGD++GA+ G+ + G IG I + YV V + VA++ Sbjct: 565 EANMTRLMVSIGRKDFVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANRVV 624 Query: 439 KQLQGGKIKGKTCRVRLLK 457 ++G IKG+ + + + Sbjct: 625 DAMEGNTIKGRRVNIEVAR 643 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 229/371 (61%), Gaps = 3/371 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + + +G+ TP+QA +P L KDV QA+TG+GKTAAFG+ Sbjct: 1 MTTFQELG-LSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++++ QALV+ PTRELA QV+ EL ++ + ++L + GGQ Q +L+ Sbjct: 60 IVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIG-AVKRVRVLPIYGGQDIERQIRALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PH+IV TPGR++DH+ +GT+ L+ ++T+V+DEAD ML+MGF + I+ ++ PA RQT Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P+ I I+ R +P +++ + + +P I+Q + E K K +L RLL + Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQ 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + +ALN G +A +HGDL Q R L +F G+ +LVATD Sbjct: 239 APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V NF++ DPE +VHRIGRT RAG +G+A++F P E + + I Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERT 358 Query: 360 LQIKLNWQTPP 370 + K+ PP Sbjct: 359 TKRKMERMKPP 369 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 179/510 (35%), Positives = 266/510 (52%), Gaps = 66/510 (12%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS + L L ++ ++G++ TP+Q+ A+P IL G+D+ QA TG+GKTAAFG+ LL+ Sbjct: 5 FSEMG-LSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLLE 63 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +D S + QAL+LCPTRELA QVA E+ LA ++L + GGQ Q ++L+ Sbjct: 64 MLDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKKGI 123 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGR++DH+++ T+ LD +V+DEAD ML+MGF + I ++ RQ +F Sbjct: 124 QVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQITMF 183 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+AI A++ Q++P I++ + + + +EQ + E K L +L+ + P Sbjct: 184 SATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNPQ 243 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFCNTKK + L G LHGD+ Q R++ + F N S +VLVATDVAA Sbjct: 244 LSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVAA 303 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE------EAQRA--- 353 RG+D+ +E V N+++ D E +VHRIGRT RAG +G A SF E QR Sbjct: 304 RGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLREIQRYTKI 363 Query: 354 -----NI-----------------ISDMLQ----------------------------IK 363 N+ I+D+L+ IK Sbjct: 364 KIKSLNVPSEKDVNTKRMESFLGEINDILEQGNLSDYVPAVEELIARGYTSMEIAAALIK 423 Query: 364 LN-----WQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 +N + A + + EM L + G K +R D++GA+TG+ G+ G IG I Sbjct: 424 MNVSKRAYSQNEAGAKNNNRDREMIKLFVSAGSKHNIRVRDIVGAITGEAGIPGDRIGSI 483 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 + H YV V + A L KIKG Sbjct: 484 ELLSKHSYVEVERRYAELVIDSLNRCKIKG 513 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 300 bits (768), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 161/371 (43%), Positives = 222/371 (59%), Gaps = 3/371 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + L ++ +G+ TP+QA +P L GKD+ QA+TG+GKTAAFGL Sbjct: 1 MTTFRELG-LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL ++D Q +V+ PTRELA QV EL ++ + +IL + GGQ Q +L+ Sbjct: 60 LLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PHIIV TPGR+LDH+ + T+ L + T+V+DEAD ML+MGF + I+ ++ P + QT Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFY-ETSSKGKIPLLQRLLSLH 239 LLFSAT P+ I I+ R +P I++ + + P QQFY E K K +L RLL + Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + +ALN G +A +HGDL Q R L +F GS VLVATD Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V NF++ DPE +VHRIGRT RAG G+A+ F P E+ + I Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358 Query: 360 LQIKLNWQTPP 370 + K++ P Sbjct: 359 TKRKMDRMDAP 369 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 167/462 (36%), Positives = 249/462 (53%), Gaps = 24/462 (5%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L L LGY T VQ + +PA L KD+ V+++TGSGKTA+FG+ L + + + QA Sbjct: 14 LRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWDENKPQA 73 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 L+L PTRELA QV ++ + RF K + G F Q+ L+ HI+V TPGR+L Sbjct: 74 LILTPTRELAVQVKEDITNIGRF-KRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVL 132 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 DH++KGT+ LD L+ LV+DEAD ML+MGF + ++ +I+ P R T+LFSAT P+ I + Sbjct: 133 DHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKL 192 Query: 195 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 S + ++P IE+ + IE + + K LL+ +L P SC++FC TK+ Sbjct: 193 SRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEH 252 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 + D L+++G +HG + Q DR + F G R LVATDVAARG+DI+++ LV Sbjct: 253 VNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLV 312 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 373 +N++L + E +VHR GRT RAGN G AISF E + I + + ++ P+ Sbjct: 313 INYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQE 372 Query: 374 SIA----------------------TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 +A L ++ L +GGKK K+R D +G + G+ Sbjct: 373 EVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVDFVGTIAKIDGVS 432 Query: 412 GADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 DIG I + YV + K ++ +KGK +V Sbjct: 433 ADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKV 474 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/396 (39%), Positives = 242/396 (61%), Gaps = 6/396 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L++ A L ++E+GY T +QA A+P I+ GKDV ++ TG+GKTAAFG+ Sbjct: 1 MTTFNELHI-SEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ + AL++CPTREL QVA ELR+ +++ KI+ + GGQP Q L+ Sbjct: 60 AIEMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLK 119 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR-- 178 I+V TPGR++DHL++ T+ L + +++DEAD ML+MGF + I++++ P+ R Sbjct: 120 RGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSY 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 QT+LFSATWP I I+ Q DP+ +EI S + +EQ +YE K L+ LL+ Sbjct: 180 QTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLN 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + P C++F NTKK + LN+ A +LHGD++Q R + + +F +GS +L+A Sbjct: 240 HYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARG+D+ ++LV+NF++ D E ++HRIGRT RAG GLAI+ + QR+ + + Sbjct: 300 TDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGR-QRSELKN 358 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 M K N + +S A ++A I+G K A Sbjct: 359 IMRYTKTNIKHHALPTS-AQMQAHNRKAYIEGVKLA 393 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 166/410 (40%), Positives = 239/410 (58%), Gaps = 16/410 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +FS L L P + + ++GY TP+Q +P ILAG DV QA TG+GKTAAFG+ Sbjct: 3 IPSFSDLQ-LSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIP 61 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ + Q +VLCP+RELA QV EL +LA IL + GGQP Q +L Sbjct: 62 AIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALS 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 II+ TPGR++DH+++ T+ LDA++ +V+DEAD+MLDMGF + I++++ P RQT Sbjct: 122 RGVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQT 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 ++ SAT+P I IS R Q++P+ +++ + +P IEQ + E K L R+L + Sbjct: 182 VILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFY 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 QP ++FCNT+ AV AL G A LHG + Q RD+ + F G +L+ATD Sbjct: 242 QPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATD 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+D++ ++LV NF+ D E +VHRIGRTARAG +G AISF +P E R + Sbjct: 302 VAARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYR------L 355 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGAL-TGDI 408 ++ + + P I TL GGKKA D + TGD+ Sbjct: 356 RDVRRSTRAEPEPLPIPTLRE-------IGGKKATTTLADADALMKTGDL 398 >UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Bacillus RepID=D2LUR2_BACS4 Length = 482 Score = 297 bits (760), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 165/464 (35%), Positives = 244/464 (52%), Gaps = 33/464 (7%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 ++ L Y +T VQ LP L KD+ V++ TGSGKTAAF + + +Q+ QALVL Sbjct: 19 IHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPICEQVTWDENSPQALVL 78 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QV E + R L K L + G QPF Q+ L+ H++V TPGRLLDHL Sbjct: 79 TPTRELAAQVKEEFMNIGR-LKRIKALAIYGKQPFDRQKLELKQKTHVVVGTPGRLLDHL 137 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR-FAPASRQTLLFSATWPEAIAAISG 196 QKGT+ ++ + LV+DEAD M + GF D +D +++ A + T ++SAT EA+ IS Sbjct: 138 QKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVTSIYSATISEAVEHIST 197 Query: 197 RVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQ 255 R +P+ I I+ PI Q + + K +Q + + P SC+VFC T+ + Sbjct: 198 RFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVENPDSCIVFCETQVNVD 257 Query: 256 AVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVN 315 + L + S +HG L Q++R + F G R LV T++AARG+DI+S+ LV+N Sbjct: 258 KLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTNLAARGIDIESISLVIN 317 Query: 316 FELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPAN--- 372 +++ D EV+VHR GRT RAGN G AI+F P+E I+ ++ + + PP N Sbjct: 318 YDMPLDKEVYVHRTGRTGRAGNKGKAITFITPDE----RILFREIEDYIGYAIPPMNIPS 373 Query: 373 -----------------------SSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 + + L + L +GGKK K+R D +G +T Sbjct: 374 EREVERLKPAFEDKMRNRPLTKRNKASQLNTNIMQLYFNGGKKKKLRAADFVGTITSIPT 433 Query: 410 LDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 + DIG I + YV + ++++ IKGKT +V Sbjct: 434 ITSDDIGVITIQERETYVDILNNKGPIVLQEMKQRTIKGKTLKV 477 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 225/369 (60%), Gaps = 4/369 (1%) Query: 4 FSTLNVLPPAQLTN-LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS LN+ A++ N + E+G+ +P+Q+ A+P IL GKD+ A+TG+GKTAAF + + Sbjct: 6 FSELNL--SAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAI 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + ++ QAL+LCPTREL QV+ + R+L ++ N +++ + GGQ Q +L+ Sbjct: 64 ELLEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKN 123 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P I++ATPGR++DH+++G++ L+ + +V+DEAD MLDMGF + ++ +++ P RQT++ Sbjct: 124 PQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIM 183 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT E I + R Q+ P I++ + P IEQ +YE K L RL+ Sbjct: 184 FSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK V + L G A +LHGDL Q+ RD+ + F NG+ +LVATDVA Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 RG+D+ ++E V N++L D E +VHRIGRT RAG G+A SF ++ I + Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363 Query: 362 IKLNWQTPP 370 IK+ P Sbjct: 364 IKIEAGKIP 372 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 154/354 (43%), Positives = 216/354 (61%), Gaps = 2/354 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 + +G+ TP+QA +P LA KDV QA+TG+GKTAAFG+ L+++I+ QA+V+ Sbjct: 18 IKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVI 77 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QV+ EL ++ + ++L + GGQ G Q +L+ PHIIV TPGRLLDH+ Sbjct: 78 APTRELAIQVSEELYKIGQD-KRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHI 136 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 + T+ L +NT+V+DEAD ML+MGF + I+ ++ PA QTLLFSAT P I I+ R Sbjct: 137 NRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAER 196 Query: 198 VQRDPLAIEIDSTDALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 +P +++ + + QQFY E + K L RLL + P +VF TK+ Sbjct: 197 FMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDE 256 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + +ALN G +A +HGDL Q R L +F G+ VLVATDVAARGLDI + V NF Sbjct: 257 LTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNF 316 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPP 370 ++ DPE +VHRIGRT RAG +G+A++F P E I + K++ P Sbjct: 317 DVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAP 370 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 232/377 (61%), Gaps = 2/377 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + + +GY TP+Q +P ++ GKD+ QA+TG+GKTAAFG+ ++ +D S+ Sbjct: 8 LSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEHVDISI 67 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 QTQ+L+LCPTRELA QV EL++L++F ++L + GG+ Q L+ HI+V T Sbjct: 68 NQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGAHIVVGT 127 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DHL + T++ L+ +++DEAD ML+MGF + I+ ++ P RQT+LFSAT Sbjct: 128 PGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSATLAP 187 Query: 190 AIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 I A++ R Q +P I+I+ + + +EQ +Y + K ++ +++ L+ ++FC Sbjct: 188 PILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQLMLIFC 247 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 NTK+ + V D L G + +SLHGD QRDR + + +F G A +LVATDVAARG+D+ Sbjct: 248 NTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAARGIDVT 307 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW-Q 367 ++ V+N+++ D E +VHRIGRT RAG G + + +E + I + + + Sbjct: 308 GVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKATIEKAE 367 Query: 368 TPPANSSIATLEAEMAT 384 TP +A + ++AT Sbjct: 368 TPTRQELVAYKKDKLAT 384 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 44/77 (57%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 +A MA L ++ G+ ++ PGD++GA G+ + G+ IG+I + + +V + + + Sbjct: 499 DASMARLFVNVGRIDRISPGDIVGAFAGEANIKGSQIGQIDIFDKYSFVELPHDLVDQVM 558 Query: 439 KQLQGGKIKGKTCRVRL 455 ++ KIKGK+ + + Sbjct: 559 DGMRNNKIKGKSINIEI 575 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 225/369 (60%), Gaps = 3/369 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ N L L + E+G+ +P+Q A+P +L +D+ QA+TG+GKTA+FG+ +++ Sbjct: 5 FNDFN-LSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVE 63 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +++ + TQA+VLCPTREL+ QVA E+ +LA++ T ++ + GGQP Q SL+ Sbjct: 64 KVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKYKGVT-VVPIYGGQPIERQIRSLKMGV 122 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +IV TPGR++DH+++ T+ + + T V+DEAD M DMGF + I+ +I F P RQT F Sbjct: 123 QVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTTFF 182 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT + + R Q +P I++ + +P + Q ++ K+ +L R+L + P Sbjct: 183 SATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQNPK 242 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 VVFCNTKK + L G A LHGDL+Q RD + +F N + +LVATDVAA Sbjct: 243 LTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAA 302 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ ++LV+N+++ D E +VHRIGRTARAG G AISF +P E + I + Sbjct: 303 RGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQKYTKT 362 Query: 363 KLNWQTPPA 371 K+ + P Sbjct: 363 KIEKRDMPT 371 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 160/457 (35%), Positives = 254/457 (55%), Gaps = 24/457 (5%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L ++ LGY + VQ +P IL KD+ V+++TGSGKTAAFG+ L +++D + Q Sbjct: 15 LKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLCEKVDWNENIPQI 74 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 LVL PTRELA QV+ ++ + RF K +++ G +P Q L+ H++V TPGR+L Sbjct: 75 LVLTPTRELAVQVSEDITNIGRF-KRIKSVSIFGKEPISEQERKLKQKTHVVVGTPGRIL 133 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 DH+ +G+++L + V+DEAD ML+MGF ++ +IR P + T+LFSAT PE I + Sbjct: 134 DHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTMLFSATIPEEIKVL 193 Query: 195 SGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 + P+ I I++ + I+ Y T+ + KI L +L +P + V+F TK++ Sbjct: 194 CDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEKPETVVIFAKTKEN 253 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 V L G S +HG + Q++R + F G R+LV+TD+A+RG+D+K + V Sbjct: 254 VDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASRGIDVKGITHV 313 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPP--- 370 +N++L + E +VHRIGRT RAG G AISFC E+ + + I + + K+ P Sbjct: 314 INYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEFIGFKIPVYNLPEKI 373 Query: 371 -----ANSSIATLEAE--------------MATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 + I TL+++ + + ++GGKK K+R GD++GA+ G+ Sbjct: 374 MVEKEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKKIRAGDIVGAICKMDGIK 433 Query: 412 GADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 DIG I V + YV + + +L+ IKG Sbjct: 434 SEDIGIIDVQDSVSYVDILNGKGKRVIDELKNITIKG 470 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 153/383 (39%), Positives = 240/383 (62%), Gaps = 4/383 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M++F + L L ++++G+ +P+QAA +P +L G+DV QA+TG+GKTAAFG+ Sbjct: 16 MSSFESFG-LNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIP 74 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ ++ + QA+VL PTRELA QVAGE+R++A++ + + + GGQ Q +L+ Sbjct: 75 LVERV-STEPRVQAIVLTPTRELAIQVAGEIRKIAKY-KRVRSVPIYGGQSIVHQIRALK 132 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I++ TPGR+LDH+ +GT+SL + +V+DEAD MLDMGF D I+ ++R P+ RQT Sbjct: 133 QGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQT 192 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT+P + ++ R RDP I ++ + +P I+Q Y+ + K+ L R++ Sbjct: 193 MLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSE 252 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TK+ + +AL G A LHGDL Q RD+ + +F +LVATD Sbjct: 253 DIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATD 312 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V+N+++ DPE +VHRIGRT RAG GLAI+ P E + I Sbjct: 313 VAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIERE 372 Query: 360 LQIKLNWQTPPANSSIATLEAEM 382 ++ K+ + P+ +A +AEM Sbjct: 373 IKQKITVREVPSLEDVAERQAEM 395 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 290 bits (741), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 153/387 (39%), Positives = 237/387 (61%), Gaps = 8/387 (2%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + ++G+ +P+QA A+P I+ GKD+ QA+TG+GKTA FG+ + + ++ Sbjct: 25 LSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAETLNPRD 84 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 + QALVLCPTRELA QVA E+ ++ R + K L + GGQ Q +L++ +++ T Sbjct: 85 GRVQALVLCPTRELAIQVAQEISKIGR-QNDLKALPVYGGQSIDRQIRALRYGVQVVIGT 143 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR+LDHL + T+ L+ + +V+DEAD MLDMGF + I+ +++ P RQTLLFSAT P Sbjct: 144 PGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLFSATMPG 203 Query: 190 AIAAISGRVQRDPLAIEIDSTDAL--PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247 I ++ + ++P + I S D L P IEQ +YE K+ L R+L + + S ++F Sbjct: 204 PIQQLARQYMKEPEFVTI-SRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIGSSIIF 262 Query: 248 CNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI 307 C TK+ + AL G A LHGDL Q RD+ + +F +G A +L+ATDVAARGLD+ Sbjct: 263 CRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAARGLDV 322 Query: 308 KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQ 367 +++ V+N+++ DPE +VHRIGRT RAG G+AI+ E ++ +I + + ++ + Sbjct: 323 ENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTKARIQRR 382 Query: 368 TPPANSSIATLEAEMATLCI----DGG 390 P+ + I + E + I DGG Sbjct: 383 DLPSMADIVERQKEAHKMKIVKLLDGG 409 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/387 (39%), Positives = 235/387 (60%), Gaps = 6/387 (1%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L ++E G+ TP+Q ++P +AG D+ QA+TG+GKTA+FG+ +L ++ QA Sbjct: 16 LQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILNRVIKGE-GLQA 74 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 LVLCPTRELA QV E+ L+R + ++L + GGQ +Q SL+ P IIV TPGRL+ Sbjct: 75 LVLCPTRELAVQVTEEISSLSRRM-RIQVLAIYGGQSIELQLRSLRRNPEIIVGTPGRLM 133 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 DH+ +GT+SL L +V+DEAD MLDMGF I ++ P RQT LFSAT P+ + + Sbjct: 134 DHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFSATLPDEVREL 193 Query: 195 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 + + P I I+S + +P IEQ +Y+ +S+ KI L R++ QP ++FC TK++ Sbjct: 194 GTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQPPISLIFCRTKRN 253 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 + L G +A +LHGD+ QR+RD + F G+ ++LVATD+AARGLDI+ + V Sbjct: 254 ADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLAARGLDIELVTHV 313 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 373 NF++ D + ++HR+GRT RAG SG+AI+ P + + +I ++ P Sbjct: 314 FNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTGKRIERALLP--- 370 Query: 374 SIATLEAEMATLCIDGGKKAKMRPGDV 400 ++A + L ++ ++A PGDV Sbjct: 371 TLAEAVEKRQDLLLERVRQASAEPGDV 397 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 151/347 (43%), Positives = 219/347 (63%), Gaps = 2/347 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L + P L L ELGY + +P+QAA +P +L +DV QA+TG+GKTA+F L +L Sbjct: 9 FADLKLSEPL-LRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILA 67 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +ID QALVL PTRELA QVA +R A ++P +L + GGQ +G Q +L+ Sbjct: 68 RIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGV 127 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H++V TPGR++DHL+KG++ L + T+V+DEAD ML MGF D ++ +++ P SRQT LF Sbjct: 128 HVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALF 187 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P AI I+ RDP I + + T I Q+++ S K+ L R+L Sbjct: 188 SATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAENFD 247 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++F TK + + L G SA +++GD++Q+ R++T+ + +G +LVATDVAA Sbjct: 248 GMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAA 307 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 RGLD++ + V+N+++ DPE + HRIGRT RAG SG AI F AP E Sbjct: 308 RGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRE 354 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 144/350 (41%), Positives = 220/350 (62%), Gaps = 10/350 (2%) Query: 7 LNVLPPAQLTNLNE-------LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 +N +P AQL +E +G+ T +QA ++P I AG DV +++TG+GKT AFG+ Sbjct: 1 MNSIPFAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGV 60 Query: 60 GLLQQIDASLF--QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 ++ ID +TQ L+LCPTRELA Q E+ ++A++ + + + GG P Q Sbjct: 61 PAVELIDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIM 120 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ +I+V TPGR++DHL++ T+ LD L +++DEAD ML+MGF + ++ +++ P Sbjct: 121 RLKRGANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDE 180 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLL 236 RQT+LFSAT P AI A++ + Q+DP IEI+ L IEQQFYE K+ L +L Sbjct: 181 RQTILFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIIL 240 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 H P+ ++FCNTK+ V L+ G SA LHGD++Q R + + F G ++LV Sbjct: 241 QYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILV 300 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 ATDVAARG+D+ +++ V+N+++ + E +VHRIGRT RAG G A++ C+ Sbjct: 301 ATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICS 350 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 287 bits (734), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 157/383 (40%), Positives = 226/383 (59%), Gaps = 5/383 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F+ LN L P+ + ++E+G+ TP+Q A+P + GKD+ QA+TG+GKTAAFG+ Sbjct: 1 MVKFTELN-LTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +++ I + Q LV+ PTRELA QVA EL R+ + + + + + GGQ F Q +L+ Sbjct: 60 MVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALE 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PHI+V TPGRLL+H+++ V + V+DEAD+MLDMGF D + +++ P RQT Sbjct: 119 ELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFY-ETSSKGKIPLLQRLLSLH 239 LLFSAT + ++ + +DP IE + P Q+Y E K K L RLL Sbjct: 179 LLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P +VF T+ + AL E G AL LHGDL Q R+ TL +F G +LVATD Sbjct: 239 KPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI+ + V NF++ DP+ +VHRIGRT RAGN+G A +F P++ I Sbjct: 299 VAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQA 358 Query: 360 LQIKLNWQTPP--ANSSIATLEA 380 + ++ + P A S+ +EA Sbjct: 359 IDHQITSKPAPGGAESTEKNIEA 381 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 286 bits (733), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 146/358 (40%), Positives = 227/358 (63%), Gaps = 3/358 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 L+++G+ + TP+QA LP L G DV +A+TG+GKTAAF + +L+ ++A QAL++ Sbjct: 19 LDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLENLEAERV-PQALII 77 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 CPTREL QV+ E++R+ +++ K+L + GGQ G Q L+ H+IVATPGRL+DH+ Sbjct: 78 CPTRELCLQVSEEIKRIGKYM-KVKVLAVYGGQSIGNQIAQLRRGVHVIVATPGRLIDHI 136 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 ++GTV L ++T+V+DEAD ML+MGF D I+ ++ P RQT+LFSAT + I I+ + Sbjct: 137 ERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSATVSKPILRIARK 196 Query: 198 VQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 257 R+P + ++ + P I++ +++T + K+ LL +LS + ++FCNTK+ Q + Sbjct: 197 YMRNPQVMRVEKKHS-PKIDEFYFKTREEDKVELLDWILSSNNIRMGLIFCNTKRRVQRL 255 Query: 258 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 317 LN +G SA +HGDL Q R++ + RF G +LVATDVAARG+ + +E VVN++ Sbjct: 256 RRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAARGIHVPDVEAVVNYD 315 Query: 318 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSI 375 L ++ E +VHRIGRT RAG+SG + + E R I ++ P+ I Sbjct: 316 LPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKRIKQSNMPSPEEI 373 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 163/391 (41%), Positives = 231/391 (59%), Gaps = 7/391 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F +LN L PA L + ELGY T + +QA +P +L KDV A+TG+GKTAAF L LL Sbjct: 7 FESLN-LSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLN 65 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID S+ Q Q LVL PTRELA QVA + A+ + ++L L GGQ + +Q +L+ Sbjct: 66 NIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRGA 125 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +IVATPGRL+DH+ +GT+ DAL LV+DEAD ML MGF D ++ ++ P +QT LF Sbjct: 126 QVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLF 185 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT P+ I IS + +P + I + ++ +Q + +S K + R L Q Sbjct: 186 SATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASIHKNKAIVRFLEAEQYEG 245 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 +VF T+ D + + L G SA L+GD+ Q+ R++T+ R +G V++ATDVAAR Sbjct: 246 AIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATDVAAR 305 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANII----SD 358 GLD+ L LV+N+++ D E +VHRIGRT RAG +G AI F E NII SD Sbjct: 306 GLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTNSD 365 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDG 389 + Q++L I L+A++ TL ++ Sbjct: 366 IAQVELPTAKIVEEKRIEALQAKL-TLALEN 395 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/374 (40%), Positives = 226/374 (60%), Gaps = 5/374 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L L L ++N+LG+ + +QA A+P + G D+ QA+TG+GKTAAFG G++ Sbjct: 6 FSNLG-LKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGIIN 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 I + A++L PTRELA QV EL+RL+++ + IL + GG P Q +L+ Sbjct: 65 HI-SKKSGLSAIILAPTRELAIQVNDELKRLSKY-DDLTILPVYGGDPITNQIRALKRNV 122 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +I+V TPGR+LDH+++GT+ LD + LV+DEAD ML+MGF D ++D+I+ P+ RQTLLF Sbjct: 123 NIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLLF 182 Query: 184 SATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 SAT P+ I ++ R + D I I T + I Q F+E S K + L R+L P Sbjct: 183 SATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDTP 242 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 SS ++FC TKK + + + G +HGD+ Q R +TL +F GS LVATDVA Sbjct: 243 SSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVA 302 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D++ + V+N++L D E +VHRIGRT RA G+A S +P+E I + + Sbjct: 303 ARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSVTK 362 Query: 362 IKLNWQTPPANSSI 375 ++ + P + I Sbjct: 363 SDISRKNIPTVNDI 376 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 215/352 (61%), Gaps = 2/352 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++ FST N A L ++ ++T +P+QA +P IL G+D A+TG+GKTAAF L Sbjct: 5 ISNFSTFN-FSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALP 63 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ + + TQAL+L PTRELA QVA + L+++ N I LCGGQ +G Q L+ Sbjct: 64 ILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+LDH+ KGT+ L+ L T ++DEAD ML MGF + ++ ++ P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P I I+ DP +IEI T + IEQ+F S K L R+L + Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +VF TK + V + L + G A+++HGD+ Q R++ + +F G+ +LVATD Sbjct: 244 DYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATD 303 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 VAARGLD++ + V+N+++ D E +VHRIGRT RAG SG+ I F P+E++ Sbjct: 304 VAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESR 355 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/348 (43%), Positives = 223/348 (64%), Gaps = 5/348 (1%) Query: 2 TAFSTLNVLPPAQLTN-LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 T F ++ ++P +LT+ L G + TPVQ A+P +L+G+DV QA+TG+GKT AF L Sbjct: 3 TEFISMGIIP--ELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLP 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ+ID Q QAL+L PTRELA Q+ EL++LA + K+L GGQ Q L Sbjct: 61 ILQRIDIDKEQVQALILTPTRELAIQITSELKKLAAAV-GAKVLAAYGGQDVDAQIRKLN 119 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++PHI+VATPGRL+DH+++ T++L L LV+DEAD+ML MGF + +++ P +RQT Sbjct: 120 NSPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQT 179 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P+ I ++ + P+ I+I S + L I+Q ET+ +G+ L ++ Sbjct: 180 MLFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQ 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P V+FC TK + + L ++G + LHGDL Q R+Q + RF + ++LVATD Sbjct: 240 RPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP 347 VAARGLD++ + V NF++ D E+++HRIGRT RAG G AI+ +P Sbjct: 300 VAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASP 347 >UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase n=2 Tax=Bacillus pumilus RepID=A8FG79_BACP2 Length = 480 Score = 284 bits (726), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 160/458 (34%), Positives = 239/458 (52%), Gaps = 23/458 (5%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 L L + T TPVQ L + +D+ V+++TGSGKTAA+GL + + +D + + QAL+L Sbjct: 19 LKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICEMVDWAENKPQALIL 78 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QV +L L R L K + G PF Q+ L HI+ TPGR+LDHL Sbjct: 79 VPTRELAMQVKQDLTSLGR-LKRIKAAAIFGKAPFQAQKIELAQKNHIVCGTPGRVLDHL 137 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 +KGT+SL+ L V+DEAD ML+MGF D + +I++ P R ++LFSAT + + +S + Sbjct: 138 EKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLFSATMSDEMKKLSEQ 197 Query: 198 VQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 + P IEI + ++P I ET + K LLQR + + P SC++FCNT+ Sbjct: 198 FLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCIIFCNTQDRVNE 257 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + L+E +HG + Q DR + F NG R L+ATD+AARG+D+ + V+++ Sbjct: 258 LTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVSDMTHVIHY 317 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSI- 375 +L ++ E ++HR GRT RAG SG I+F + + + I Q P Sbjct: 318 DLPYEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKEEAGIDFKTQPYPTKEDAE 377 Query: 376 --------------------ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 A +E ++ L +GGKK K+R D +G + G+ DI Sbjct: 378 QHVERFEEKIETPIQKENKQAGVEKDIMKLYFNGGKKKKLRAVDFVGTIAKIDGVAFDDI 437 Query: 416 GKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 G I + YV + ++ IKGK +V Sbjct: 438 GIITIQDTKTYVDILNGKGPLVLNAMRHTTIKGKQLKV 475 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 283 bits (725), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 224/373 (60%), Gaps = 3/373 (0%) Query: 1 MTAFSTLNVLPPAQ--LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFG 58 M + + LP + L + ELG+ +P+Q+ A+P +L G+DV QA+TG+GKTAAFG Sbjct: 1 MESVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFG 60 Query: 59 LGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 L LLQ+IDA+ QALVLCPTRELA QVA L LA+ L +IL++ GGQP Q + Sbjct: 61 LPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ ++V TPGR+LDH+ +GT+ L + V+DEAD MLDMGF + I+ ++ P Sbjct: 121 LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 Q+ FSAT P+ I ++ R R+P + + + EQ ++E ++ + R+ Sbjct: 181 QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD 240 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + P +VF TK+ + AL + G A +LHGDL Q R++ + RF G VLVA Sbjct: 241 AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA 300 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARGLD+ ++ V+NF+L DPE +VHRIGRT RAG +G A SF A + + I Sbjct: 301 TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQ 360 Query: 358 DMLQIKLNWQTPP 370 + +++ + P Sbjct: 361 RVTGSRIDRRAMP 373 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 385 LCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGG 444 L + G++ ++ P D++GA+ G+ G+ G IG I +H +V V ++A + + G Sbjct: 451 LFFNVGRRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVVSVMHGN 510 Query: 445 KIKG 448 +I+G Sbjct: 511 QIRG 514 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 283 bits (724), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 144/355 (40%), Positives = 223/355 (62%), Gaps = 3/355 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 + ++G+ +P+Q +P IL G DV QA+TG+GKTAAFG+ LL+++ S Q Q+L+L Sbjct: 17 IKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEKV-TSDRQVQSLIL 75 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QVAGEL++L++F ++IL + GGQ G Q +L+ ++V TPGR+LDHL Sbjct: 76 TPTRELAIQVAGELQKLSKF-KRSQILPIYGGQSIGHQIKALKRGVQVVVGTPGRVLDHL 134 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 + T+ L +++TL++DEAD MLDMGF + I+ +++ +RQT+LFSAT P I +S + Sbjct: 135 NRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTMLFSATMPPPIRKLSNK 194 Query: 198 VQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 +P + I + P I Q +++ K K+ L R++ ++FC TKK Sbjct: 195 YMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSETIDLGIIFCRTKKGVAE 254 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + +AL G A LHGDL Q RD + +F + S L+ATDVAARG+D++++ V+N+ Sbjct: 255 LTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVAARGIDVENVSHVINY 314 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPA 371 ++ DPE +VHRIGRT RAG G+A++ P E + I +++ + Q P+ Sbjct: 315 DIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIEAEIKMTIPSQRIPS 369 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 155/392 (39%), Positives = 243/392 (61%), Gaps = 8/392 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ L++ P L L+E+GY T +P+QA +P +LAG D+ +A+TG+GKTAAF L Sbjct: 43 IESFAQLDLRAPL-LDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALP 101 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL ++D ++ Q LVL PTRELA QVA +R A+ LP +L + GGQ +Q L Sbjct: 102 LLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLA 161 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H+IV TPGR++DH+++ +++LD+L TLV+DEAD ML MGF D ++ +++ PA RQT Sbjct: 162 RGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQT 221 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P+AI ++ R R+P ++I ST + Q++ + S K+ L R+L + Sbjct: 222 ALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVE 281 Query: 240 QP-SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + + ++F TK + D L G SA +L+GD+ Q+ R++ + + G ++VAT Sbjct: 282 EDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVAT 341 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ + V+N+++ +D E +VHRIGRT RAG +G AI F AP E + +I Sbjct: 342 DVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIER 401 Query: 359 MLQ-----IKLNWQTPPANSSIATLEAEMATL 385 + ++L + A+ +A ++AT+ Sbjct: 402 ATRQPIEALQLPSREAVADKRVAAFRQQVATV 433 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 243/446 (54%), Gaps = 12/446 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L P L ++++G+ P+QAA +P +L G+DV + TGSGKT AF + L+ Sbjct: 6 FAELG-LSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALE 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++D L Q LVLCPTRELA QVA E+ LA+F + + GGQ + Q +L Sbjct: 65 RVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGS 124 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +++ TPGR++DH+++GT+ L AL +V+DEADRMLDMGF + I+ ++ P RQ L F Sbjct: 125 QVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFF 184 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I + R RDP I+I++ P +EQ ++E + K+ L RL+ +H Sbjct: 185 SATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFR 244 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFC+TK + + L+ G + LHGDL Q RD+ + +F L+ATDVAA Sbjct: 245 YGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAA 304 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ LE+V N++L D E + HRIGRT RAG SG A +F + +E + + ++ Sbjct: 305 RGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKL 364 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAK-MRPGDVLGALTGDIGLDGADIGKIAVH 421 L P+ + + I +AK +P D + D G DI +H Sbjct: 365 DLRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRMIDRLLDQGYASTDICSALIH 424 Query: 422 ---------PAHVYVAVRQAVAHKAW 438 PA V+ + + + A W Sbjct: 425 LLQGGSTGTPAAVHESAKASAAAPDW 450 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 281 bits (719), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 153/381 (40%), Positives = 232/381 (60%), Gaps = 5/381 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F TL LP + +LG+ T + +QA A+PA+L G+D+ A+TG+GKTAAFGL LL Sbjct: 51 FDTLG-LPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLA 109 Query: 64 QIDA---SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++A + QALVL PTRELA QVA + A LP+ ++L++ GG P+ Q+ +L+ Sbjct: 110 SVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALR 169 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H++V TPGR++DHL++G + LD LV+DEAD ML MGF++ ++ + +AP RQ Sbjct: 170 DGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQV 229 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P AI AI+ DP+ I + + + + Q + + K+ L R+L+ Sbjct: 230 ALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRILATS 289 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + +VF T+ + V AL E G SA ++ GD+ Q++R++ + R +G+ VLVATD Sbjct: 290 DADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATD 349 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + LVVNF++ + E +VHRIGRT RAG +G A+SF P E + I + Sbjct: 350 VAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIENT 409 Query: 360 LQIKLNWQTPPANSSIATLEA 380 +++ L P+ ++ A Sbjct: 410 IKVSLEEIDIPSPRDVSAHRA 430 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 280 bits (716), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 145/330 (43%), Positives = 209/330 (63%), Gaps = 1/330 (0%) Query: 21 LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80 +GY T +P+QAA +PA+L G+DV QA+TG+GKTAAF L +L ID + QALVL PT Sbjct: 27 IGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIKPQALVLAPT 86 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELA QVA + + +P ++L + GGQP+G Q +L+ HI+V TPGR++DHL + Sbjct: 87 RELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRS 146 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 T+ L L TLV+DEAD ML MGF D ++ V++ PA RQ LFSAT P I I+ + Sbjct: 147 TLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVALFSATMPPQIRRIAQTYLQ 206 Query: 201 DPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 DP+ + I + T I Q+++ S K+ L R+L + + ++F TK + + Sbjct: 207 DPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMIIFARTKAGTEELAS 266 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 L G +A +++GD++Q R++T+ G +LVATDVAARGLD++ + V+N+++ Sbjct: 267 KLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIP 326 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 +D E +VHRIGRT RAG SG AI F P E Sbjct: 327 YDTESYVHRIGRTGRAGRSGEAILFATPRE 356 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 280 bits (716), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 154/360 (42%), Positives = 215/360 (59%), Gaps = 5/360 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L+ LP L+ L LGY T + +QA +PA+L G+DV QA+TG+GKTAAF L LL Sbjct: 11 FAELS-LPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLS 69 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++D + Q LVL PTRELA QVA + R + ++L+LCGGQ + Q L+ Sbjct: 70 RLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRGA 129 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +IV TPGR++DHL +G++ LD LN LV+DEAD ML MGF D + V+ P Q + F Sbjct: 130 QVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVFF 189 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ I+ I DPL I I++ T IEQ+ K+ L RLL + Sbjct: 190 SATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPVD 249 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF T+ C + + L G +A +L GDL+Q R++T+ R G VL+ATDVAA Sbjct: 250 AAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVAA 309 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + V N++L D E + HRIGRT RAG +G+AI+F E +R + DM ++ Sbjct: 310 RGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRR---VRDMERV 366 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 280 bits (715), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 152/349 (43%), Positives = 212/349 (60%), Gaps = 2/349 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F+ L + P L LN+LGY +P+QA +P +L G+DV A+TGSGKTAAF L L Sbjct: 6 TTFADLGLKAPI-LEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ +D L Q LVL PTRELA QVA + ++ + ++ L GGQ + +Q +L+ Sbjct: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P I+V TPGRLLDHL++GT+ L L+ LV+DEAD ML MGF + ++ ++ P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT PEAI I+ R ++P + I S+ P I Q ++ K L R L Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + ++F TK V +AL G ++ +L+GD+ Q R+QTL R +G +L+ATDV Sbjct: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 AARGLD++ + LVVN+++ D E +VHRIGRT RAG +G A+ F E Sbjct: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 150/350 (42%), Positives = 217/350 (62%), Gaps = 4/350 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F LN+L P L +NE+GY+T TP+Q+ A+P++LAGKDV +A+TG+GKTAAFGL LL Sbjct: 9 FDQLNLLAPV-LQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLS 67 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++DA L Q Q LV+CPTRELA QVA L A+ + + T+ GGQ + Q L P Sbjct: 68 RLDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARGP 127 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 I+V TPGR++DH++KG + LD L V+DEAD ML+MGF + I+ ++ P Q F Sbjct: 128 QIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAFF 187 Query: 184 SATWPEAIAAISGRVQRDPLAIEI--DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 SAT P I I+ + DP+ ++I +D P I Q+ + GK L+R+ + Sbjct: 188 SATMPAPIKKITNQFLTDPIHVKIAVQKSDK-PKITQKSWTVGRIGKTVGLERIAEVVDY 246 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF T+ D + + L G A +L+GD++Q+DR++ + + NG +L+ATDV Sbjct: 247 DAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVV 306 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 ARGLD+ + V+N++L D E +VHRIGRT RAG G AI F + E + Sbjct: 307 ARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVR 356 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 26/366 (7%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F LN L L +L+ELGY T +Q A+PA++ GKD+ QA+TG+GKTAAFG+ +++ Sbjct: 8 FKDLN-LSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIVE 66 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQH 121 +++ + QAL+L PTRELA QVA E++ L + N K+ TL GG+ Q + L+ Sbjct: 67 KVNPKQKKVQALILVPTRELAIQVAKEIKELGK---NKKVYTLAVYGGKSISHQINFLKK 123 Query: 122 APHIIV-ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+ D L++G ++LD + V+DEADRML+MGF D I++++ + P RQ Sbjct: 124 GSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQN 183 Query: 181 LLFSATWPEAIAAISG----------RVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIP 230 LLFSAT P+ I ++ RV+ D + +E I+Q Y + + K Sbjct: 184 LLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVE--------KIKQIIYRVNPRDKFK 235 Query: 231 LLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 L +LS ++ ++F TK + + + LNE G +A ++HGD Q+ R+ L F G Sbjct: 236 KLTEVLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTG 295 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP-EE 349 ++LVATDVAARGLDIK ++LV+N+ L D E ++HRIGRT RAG G AIS P E+ Sbjct: 296 KLKILVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSED 355 Query: 350 AQRANI 355 Q NI Sbjct: 356 KQLQNI 361 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 151/351 (43%), Positives = 216/351 (61%), Gaps = 4/351 (1%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P L L+ LGY T TP+Q+ A+ +L G DV A+TG+GKTAAF L LL +ID + Sbjct: 12 LAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLSRIDTTK 71 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 + QALVLCPTRELA QVA + AR + N +L + GG Q +L+ P +IV T Sbjct: 72 NKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQNPQVIVGT 131 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DHL++GT+ L L LV+DEAD ML MGF + ID ++ P +QT LFSAT P Sbjct: 132 PGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSATMPH 191 Query: 190 AIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 I I+ + Q+DP+ IEI ++ + L IEQ + K+ L R+L + ++ ++F Sbjct: 192 QIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDWNAIIIFV 251 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 T+ +CQ + + L G +A +L G++ Q+ R+ L G +++ATDVAARG+DI+ Sbjct: 252 RTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVAARGIDIE 311 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 + V+N+++ D + HRIGRT RAG SG AI FC P E + II D+ Sbjct: 312 RITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQR---IIRDI 359 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 155/350 (44%), Positives = 217/350 (62%), Gaps = 2/350 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++ F+ L LP L L ++GY T +P+QAA +P +LAG+DV QA+TG+GKTAAF L Sbjct: 6 ISPFAELG-LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALP 64 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L +ID + TQALVL PTRELA QVA R A LP +L + GGQ + Q SL+ Sbjct: 65 ILAKIDCNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLK 124 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H++V TPGR++DHL++GT+ LD L +V+DEAD ML MGF D ++ +++ P RQ Sbjct: 125 RGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQV 184 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQ-FYETSSKGKIPLLQRLLSLH 239 LFSAT P AI I+ RDP I I + QQ ++ S K+ L R+L + Sbjct: 185 ALFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVE 244 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++F TK+ + + + L G +A +L+GD+ Q R++ + R +G +LVATD Sbjct: 245 PFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATD 304 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 VAARGLD++ + VVN+++ D E +VHRIGRT RAG SG AI F P E Sbjct: 305 VAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRE 354 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 139/341 (40%), Positives = 212/341 (62%), Gaps = 1/341 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P L ++++G+ +P+QAA +P +LAG DV Q+ TGSGKTAAF L ++++D L Sbjct: 5 LSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERVDTKL 64 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 Q L+LCPTRELA QVA E+ +LA F + + GGQ + Q +L +++ T Sbjct: 65 KAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQVVIGT 124 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DH+++GT+ LD L+ +++DE DRMLDMGF D I+ +++ P RQ+L FSAT P Sbjct: 125 PGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFSATMPR 184 Query: 190 AIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 I + R +P ++I++ + P ++Q ++E + K+ +L RL+ L+ ++FC Sbjct: 185 EIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRYGIIFC 244 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 +TK + + L+ G + LHGD+ Q R +T+ +F L+ATDVAARGLD+ Sbjct: 245 STKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAARGLDVD 304 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 LE+V NF+L D E + HRIGRT RAG G A +F + E Sbjct: 305 DLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRE 345 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 147/347 (42%), Positives = 210/347 (60%), Gaps = 2/347 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F++L LP NL LGY T TP+QA +P +L G+DV A+TG+GKTAAF L +L Sbjct: 11 FNSLG-LPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILA 69 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID + QALVLCPTRELA QVA R R + +IL++ GG Q SL+ Sbjct: 70 NIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGT 129 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+VATPGRLLDH+++ ++ L +N +V+DEAD ML MGF D +D ++ P R+ LF Sbjct: 130 HIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALF 189 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ + I+ + +P I + + IEQ ++ K+ L+RLL+ Sbjct: 190 SATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTE 249 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VF T++ + + L + G A L+GD++Q+ R +T+ +G+ VLVATDVAA Sbjct: 250 GVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAA 309 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 RGLD++ + V+N+++ +D E +VHRIGRT RAG G AI F P E Sbjct: 310 RGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRE 356 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 142/341 (41%), Positives = 218/341 (63%), Gaps = 3/341 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F + L P + ++++ Y T +QA A+P ++ G DV ++ TG+GKTAAFG+ Sbjct: 4 TKFEDIG-LSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPA 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++I++ L Q LVL PTRELA Q+A E+R+ A++ P + + GG P Q +L+ Sbjct: 63 VERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALR- 121 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 A +I++ TPGR++DH+++ T+ LD L T+V+DEAD ML+MGF D I ++ P +RQT+ Sbjct: 122 AANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P AI I+ + DP ++I + + +EQ FY K+ L LL H Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLLQYHD 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P VVFCNTK ++ + L++ G AL +HGD++Q R Q + F +G R+LVATDV Sbjct: 242 PKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDV 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLA 341 AARG+D++++E V NF++ + E ++HRIGRT RAG +G++ Sbjct: 302 AARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMS 342 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 149/358 (41%), Positives = 209/358 (58%), Gaps = 3/358 (0%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L +NE G+ +PVQA A+P +L G D+ QA+TG+GKTAAFGL + IDA+ + Q Sbjct: 14 LKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTMSMIDANQNRVQL 73 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 LV+ PTRELA QV+ EL L RF K +T+ GG + Q ++ +IVATPGR+L Sbjct: 74 LVITPTRELATQVSDELYSLGRFC-GIKTVTIYGGSSYSRQIGLIEKGASVIVATPGRML 132 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 D L+ G + A +V+DEAD MLDMGF + I+++ + P RQTLLFSAT PE I + Sbjct: 133 DLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLLFSATMPEPIKRL 192 Query: 195 SGRVQRDPLAIEIDSTDAL--PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKK 252 + ++ +P + I D IEQ +Y + + + RLL +P +VFC TKK Sbjct: 193 ASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDALEPEKSIVFCRTKK 252 Query: 253 DCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLEL 312 + + L VG +A LHGD+EQ R+ + F + +LVATDVAARGL++ + Sbjct: 253 EVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDVAARGLNVADISH 312 Query: 313 VVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPP 370 V N+ + +DPE +VHRIGRT RAG G AI+ P E I + K+ + P Sbjct: 313 VFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGKKVGSKIEHRIVP 370 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 277 bits (708), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 141/336 (41%), Positives = 206/336 (61%), Gaps = 12/336 (3%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ------ 71 + E GY T +Q+ A+P +L D+ Q++TG+GKTAAFGL +L SL Q Sbjct: 32 VTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML-----SLTQPGDKKR 86 Query: 72 TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPG 131 T +L+LCPTREL QVA E+R +++ I + GG P Q L+ I+VATPG Sbjct: 87 TNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKRGADIVVATPG 146 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RL+DH+++ T+ LD +V+DEAD ML+MGF + I+++ F P RQ FSAT P+ I Sbjct: 147 RLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSATMPKEI 206 Query: 192 AAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 +S + +P I + + + I+Q +Y S+ K+ L +LL LH+ S ++FCNT Sbjct: 207 VKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKTSGTMIFCNT 266 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 KK + LN+ G AL LHGD++Q R + RF G VL+ATDVAARG+D+ S+ Sbjct: 267 KKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAARGIDVDSM 326 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 ++V+N+++ + E +VHRIGRT RAG GLAI+ + Sbjct: 327 DVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVS 362 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 277 bits (708), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 33/480 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F +N L L L LG+ + VQ +P IL KD+ V+++TGSGKTA+FG+ Sbjct: 3 IDKFENMN-LSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIP 61 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L + ++ + +AL+L PTRELA QV ++ + R L + + G QPF Q L+ Sbjct: 62 LCELVNVEENKVKALILVPTRELAIQVKEDISNIGR-LKKVRCAAIFGKQPFNEQIRELK 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI+ TPGR++DH+++G + ++ ++ +++DEAD+ML+MGF D I DV+ P S+ T Sbjct: 121 QRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P+ I + +P + I S I ++++ + K L + L Sbjct: 181 ALFSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAF 240 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 S ++FCNTK + + L + S LHGD++Q+DR T+ F N +VLVATD Sbjct: 241 TDESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATD 300 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+ I + V N+E+ + E +VHRIGR+ R GLAIS + E + N I + Sbjct: 301 VAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEEY 360 Query: 360 LQIKLNWQTPPAN--------------------------SSIATLEAEMATLCIDGGKKA 393 +N+ AN + + E+ + I GKK Sbjct: 361 ----INYSIEEANLLEYEEIIEGRKRFFESQKNDYNNKTNVKKNIHNEVTKIHITAGKKK 416 Query: 394 KMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 K+R D++GA + L G DIG I V H +V + + K+ + ++KGK ++ Sbjct: 417 KIRNIDIVGAFSNLEELTGEDIGIIDVQDGHSFVDILNGKGNLILKRYKEIRLKGKVAKL 476 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 276 bits (707), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 220/372 (59%), Gaps = 4/372 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M +F L L + L + G+ TP+Q A+P ++ GK DV QA+TG+GKTAAFG+ Sbjct: 1 MESFKNLG-LSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ ID S TQAL+L PTRELA QVA E+ + + + + GGQ Q L Sbjct: 60 PILETIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIREL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR+LDH+ + T+ L+ ++ +V+DEAD ML+MGF D ++++++ ++ Sbjct: 119 KRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI-EQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P++I ++ R+ I++ + +Q +YE S+ K LL R++ + Sbjct: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDV 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC TK D + L E G +A LHGD+ Q R++TL +F VLVAT Sbjct: 239 EKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+DI L VVN+++ +PE +VHRIGRT RAG G A++F P E ++ I Sbjct: 299 DVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQK 358 Query: 359 MLQIKLNWQTPP 370 + ++ + P Sbjct: 359 IANTEIRKEEVP 370 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 222/368 (60%), Gaps = 3/368 (0%) Query: 1 MTAFSTLNVL--PPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFG 58 MT T N L P L +++LG+ T +P+Q + +P +L G DV A+TGSGKTAAF Sbjct: 1 MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFA 60 Query: 59 LGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 L LL QID S Q LV+ PTRELA QVA ++ T+I+TL GGQ + +Q + Sbjct: 61 LPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRA 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ ++V TPGR+LDH+++GT++L L +V+DEAD ML MGF D ++ V+ P + Sbjct: 121 LKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLS 237 QT LFSAT PE I I+ R DP ++I + + P I+Q + K L R L Sbjct: 181 QTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLE 240 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + + ++F TK + + L + G + +L+GD+ Q+ R+QTL R NGS ++VA Sbjct: 241 VEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA 300 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARG+DI+ + LVVN+++ D E +VHRIGRT RAG SG A+ F P E + I Sbjct: 301 TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE 360 Query: 358 DMLQIKLN 365 +++ +N Sbjct: 361 HLMKKGIN 368 >UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostridium RepID=B1V1Y2_CLOPE Length = 453 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/473 (32%), Positives = 247/473 (52%), Gaps = 48/473 (10%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN L + LN LGY + VQ A++P +L G+D+ V+++TGSGKTA+FG+ + + Sbjct: 3 FNELN-LSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCE 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +I+ + Q LVL PTRELA QV EL + R + + + G QPF Q L+ Sbjct: 62 KINIEEKKVQCLVLTPTRELAIQVKDELSNIGR-IKKVRCAAIFGKQPFNEQIRELKQRV 120 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+V TPGR+ DH+++GT+ L +N +V+DEAD+ML MGF D I D++ ++ T LF Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+ + I I R+P+ +E+ S ++ + + Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKS------------------------KVFNRDRIEE 216 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 + K ++V L + G + LHGD+EQ+ R + + F + +VLV TD+AAR Sbjct: 217 SAIEIEEKNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAAR 276 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 G+ + S+ELV+N+E+ + E +VHRIGRT RAG G AI+F E + + + + + Sbjct: 277 GIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGYE 336 Query: 364 LNWQTPPANSSI----------------------ATLEAEMATLCIDGGKKAKMRPGDVL 401 + + P++ + + ++ + ++GGKK K+R D++ Sbjct: 337 IRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKKKIRAFDIV 396 Query: 402 GALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVR 454 G + GL G DIG I V YV + K K + IKGK +++ Sbjct: 397 GCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKIQ 449 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 217/371 (58%), Gaps = 3/371 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F LN+ P+ + + ++G+ TP+Q +P G+D+ QA+TG+GKT AFG+ Sbjct: 1 MALFKDLNI-QPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+ QALVL PTRELA QVA EL +L + + K L + GGQ Q +L+ Sbjct: 60 CVEQVVVEEKHPQALVLTPTRELAIQVAEELNKLGQ-VKGIKALPIYGGQEITRQITALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 P IIVATPGR +DH+++ T+ + L +V+DEAD ML MGF + I+ +++ P RQT Sbjct: 119 KRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P + I+ R P++I + + + IEQ++ S K K L LL + Sbjct: 179 LLFSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLDME 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P ++F TK+ + ++L+ G + LHGD++Q RDQ + +F GS V+VATD Sbjct: 239 TPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V+NF+L D E +VHRIGRT RAG G++ SF +E I + Sbjct: 299 VAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEES 358 Query: 360 LQIKLNWQTPP 370 + K+ P Sbjct: 359 TRQKMKQVDAP 369 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 159/461 (34%), Positives = 247/461 (53%), Gaps = 28/461 (6%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 L+ L Y+ TP+Q +P L GKD+ ++KTGSGKTAAF + + + I QALVL Sbjct: 19 LSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICESIVWEENLPQALVL 78 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QV E+ + R + K+ + GG PF Q +L+ HI+V TPGR+LDH Sbjct: 79 EPTRELAYQVKDEIFNVGR-MKRVKVPVVFGGFPFDKQALTLKQKSHIVVGTPGRVLDHC 137 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 + GT+ + +++DEAD MLDMGF D + ++ + P + +LFSAT EA+ A++ Sbjct: 138 ETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFSATMGEALYALTDE 197 Query: 198 VQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 P+ +++ D T+ + IEQ + + K L R+L + P++ ++FC T++ + Sbjct: 198 FMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNNPTNAMIFCGTREMVEV 257 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + L + LHG ++Q+ R T+ F G R L+ATDVAARG+D + V+N+ Sbjct: 258 LYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDVAARGVDFDDITHVINY 317 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIA 376 +L E +VHRIGRT R G SG AISF EE + ++I + TPP+ + Sbjct: 318 DLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFTGTPIEIVTPPSEEEVR 377 Query: 377 ------------------------TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDG 412 + ++ L I GG+K+K+R +V+G ++G G++G Sbjct: 378 EFLYKEKFNEAQQKKQERKKKKGDVFQKDIMKLTISGGRKSKLRTCEVVGTISGIEGVNG 437 Query: 413 A-DIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCR 452 DIG I + + YV + + +L +KGK CR Sbjct: 438 KEDIGVIDIRDSITYVEILNGKGNLVLNELPKRTMKGK-CR 477 >UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomycetaceae RepID=Q7UNV7_RHOBA Length = 452 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/354 (41%), Positives = 223/354 (62%), Gaps = 6/354 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M +F L+ L P + + G+ T +P+QAA +P L GKDV QA+TG+GKTAAF + Sbjct: 43 MDSFDELD-LSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIP 101 Query: 61 LLQQIDA--SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 +L+Q+D+ QA+V+ PTRELADQVA E RLAR +P T+I L GG+ Q Sbjct: 102 ILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVP-TEIAVLSGGKNMNRQLRQ 160 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L++ ++V TPGR+ DHLQ+GT+ + + +V+DEADRMLD+GF I+ ++R P +R Sbjct: 161 LENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNR 220 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 QTLL SAT P + ++ +P+ I+ + A+ IEQ+++ + K+ LL+ LL Sbjct: 221 QTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLK 280 Query: 238 LHQPSSCVVFCNTKKDCQAVCDAL-NEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +P ++FC TK+ + L +E G + ++HGDL+QR+RD+ L + +G+ + LV Sbjct: 281 REKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLV 340 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 ATDV RG+DI ++ +VNF++ D + +VHR+GRT R G G+A +F P E Sbjct: 341 ATDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEG 394 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 150/357 (42%), Positives = 219/357 (61%), Gaps = 3/357 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 TAFS L L + + L+ELG+ TP+Q ++P +L G+D+ QA+TG+GKTAAFGL L Sbjct: 3 TAFSALG-LSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPL 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + + D + QALVL PTRELA QV + ++ ++L + GGQP Q L+ Sbjct: 62 VDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKH-SGVRVLPIYGGQPIDRQMRRLRA 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR+LD +++G++ L AL TLV+DEAD+MLDMGF + + ++ AP RQ + Sbjct: 121 GAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLV 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P +I ++ R R P+ + + + + P I Q+ Y + K + L R+L+ Sbjct: 181 FFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAED 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P+S ++F TK+ + + L + G A +LHGDL Q R+ L RF V+VATDV Sbjct: 241 PASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 AARGLDI L V+N+++ D E ++HRIGRT RAG +G+AISF P + R +I Sbjct: 301 AARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIE 357 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 156/372 (41%), Positives = 229/372 (61%), Gaps = 9/372 (2%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 LP A L + LG+ T TP+Q AA+PA+L+G+D+ A+TG+GKTAAFGL LL +D L Sbjct: 27 LPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLAAVDPQL 86 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPN---TKILTLCGGQPFGMQRDSLQHAPHII 126 QALVL PTRELA QV+ +A F+P+ K+L + GG F Q L+ ++ Sbjct: 87 AAVQALVLTPTRELAIQVSDA---VASFVPSGAGVKVLPIYGGASFVPQLRGLERGAQVV 143 Query: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 V TPGR++D L++G++ LDAL LV+DEAD ML MGF++ +D ++ PA++Q LFSAT Sbjct: 144 VGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVALFSAT 203 Query: 187 WPEAIAAISGRVQRDPLAIEIDSTDALP--PIEQQFYETSSKGKIPLLQRLLSLHQPSSC 244 P I ++ R+P I + + A P + Q + + K L R+L+ + Sbjct: 204 MPPPIRKVAETHLRNPEEIAV-ARQATPIAAVTQTYAIVPYRNKAEALSRVLATSDADAA 262 Query: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304 +VF T++ + V AL G +A S+ GD+ QR+R++ + R +G+ VLVATDVAARG Sbjct: 263 IVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVAARG 322 Query: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 LD++ + LVVNF++ + E +VHRIGRT RAG +G A++F P+E R I + +L Sbjct: 323 LDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIERVTGSRL 382 Query: 365 NWQTPPANSSIA 376 T P N+ +A Sbjct: 383 VEATIPTNAEVA 394 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 390 GKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGK 449 G + + P ++GA+TG+ GL GADIGKI + P+ V + V+ +++ K+ G+ Sbjct: 493 GHRDGVSPQAIVGAITGEGGLRGADIGKIDIFPSFSLVEIPGGVSPDVARRIGAAKVAGR 552 Query: 450 TCRVRL 455 R+RL Sbjct: 553 PLRIRL 558 >UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8E9_9FIRM Length = 475 Score = 274 bits (701), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 157/456 (34%), Positives = 245/456 (53%), Gaps = 23/456 (5%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 L+ LGY PVQ +P IL+ D V+++TGSGKTA+F + ++Q ++ QALVL Sbjct: 16 LHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPIIQNLEIDERSPQALVL 75 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA Q+ + R+ F K L + G QPF Q++ L+ H+++ TPGR+LDHL Sbjct: 76 TPTRELALQIQQDFDRIGTF-KKIKTLPIFGKQPFKFQKEDLKQRCHVVIGTPGRVLDHL 134 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 Q+ T+ + +V+DEAD ML+M F D + ++++ P T LFSAT+P I +S + Sbjct: 135 QQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVTCLFSATYPAVIQRMSKK 194 Query: 198 VQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 257 P +++ ST+ P I ++ Y + + K L LL+L +P SC++FC T+ AV Sbjct: 195 YLYKPAKVDLTSTNK-PNILEEAYHVNEEHKELFLLHLLALKKPESCMIFCKTQARVDAV 253 Query: 258 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 317 L + S +HG + Q +R + RF G R+LV TDVA+RG+D+ +E+++N++ Sbjct: 254 YACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTDVASRGIDVFKVEMIINYD 313 Query: 318 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQT--------- 368 + E + HRIGR+ R GLAIS + R + + L L ++ Sbjct: 314 MPSPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKLEEYLGYNLPFKDEGEVYLSDL 373 Query: 369 ------PPANSSIA----TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 +N + L + + ++GGK K+RPGD++GA+ G+ DIG I Sbjct: 374 DVLDSLKESNRVVVDKSKDLRKGITKIYLNGGKNKKIRPGDIVGAICEIDGVTVDDIGVI 433 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVR 454 V YV + K L+ IKGKT R++ Sbjct: 434 QVQDHQSYVDILNDKGKLVLKNLKT--IKGKTLRIQ 467 >UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A36 Length = 483 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 249/470 (52%), Gaps = 24/470 (5%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + L+ LGY T +Q +PA+L G++V +++TG+GKTAAFG+ L ++I Sbjct: 15 LAPEIIHALDLLGYQEPTEIQREVIPAVLEGRNVAARSRTGTGKTAAFGIPLCEKIVWEE 74 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 QALVL P+RELA QV+ EL + R K+ + GG P Q +++ HI+V T Sbjct: 75 NLPQALVLEPSRELAVQVSNELFHIGR-RKRLKVPAVFGGFPIDKQMRTIKQKSHIVVGT 133 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++D +Q+ + L + LV+DEAD MLDMGF + + ++ P + LLFSAT E Sbjct: 134 PGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLLFSATLDE 193 Query: 190 AIAAISGRVQRDPLAI--EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247 + + D + I E D+ + P I Q Y + K LL+R L L P SC++F Sbjct: 194 KVRLLVDEYMADAVMIAPEPDAEEE-PAISQVVYRADPEEKYDLLKRTLILENPESCMIF 252 Query: 248 CNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI 307 C T++ + L +HG++EQR+R +T+ F G R L+ATDVAARG+D Sbjct: 253 CGTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIATDVAARGIDF 312 Query: 308 KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQ 367 ++LVVN++ E +VHRIGRT R G +G A+S E + +++ + +L+ Sbjct: 313 DKIDLVVNYDFPGGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMGRELSVT 372 Query: 368 TPPANSSIAT--------------------LEAEMATLCIDGGKKAKMRPGDVLGALTGD 407 T P AT L A + L I GG+K+KMR D++G + Sbjct: 373 TCPEPDEEATKAFWTRQRERRAPKAQKGAALNAGITRLSIGGGRKSKMRAVDIVGTICSI 432 Query: 408 IGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 G+ DIG I + + YV + ++LQ IKG+ +VR+ + Sbjct: 433 DGIGAEDIGIIDIRESLTYVEILNGKGQAVLEKLQEKTIKGRLRKVRIAR 482 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 3/369 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN+ L +++LGY +P+Q ++P +L G D+ +++TGSGKTAAF + +++ Sbjct: 3 FNELNIGNEI-LRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIE 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 I+A+ TQAL+LCPTREL QV+ E+ +L ++ KIL++ GG Q SL+ Sbjct: 62 NIEANGI-TQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLKKGV 120 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 I+V TPGRL+D +++ + LD L T+V+DEAD M DMGF D + ++ +RQT F Sbjct: 121 EIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCFF 180 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT I S Q +P ++I S + + I+Q + + K L RLL +H+ + Sbjct: 181 SATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLLEIHKAN 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFCNTK+ + ++L + LHGDL+Q RDQ + +F N + ++LVATD+AA Sbjct: 241 LAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVATDIAA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ +++V N++L E +VHRIGRTARAG SGL+ S + + R I + + Sbjct: 301 RGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIENYTKA 360 Query: 363 KLNWQTPPA 371 + P Sbjct: 361 NIKQMPVPT 369 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 144/345 (41%), Positives = 206/345 (59%), Gaps = 3/345 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L + P L ++++G+ T T VQ+ A+P IL +D+ V +KTGSGKTA FG+ + Sbjct: 3 NTFNELGISAPI-LKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ + Q L+L P RELA QV ++R++A++L + K + G ++ L Sbjct: 62 LQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILNK 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+ TPGR+ DH+ GT+S + LV+DEADRMLDMGF D + +++ P R TL Sbjct: 121 GVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITL 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I I R +P+ IEI+S T + I Q +Y + K L RLL + + Sbjct: 181 LFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEK 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P SC++FCNTK V L + G S+ +LHGD+ Q R T+ +F G +LVATDV Sbjct: 241 PESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 AARG+ I+ L LV+N+++ D + +VHRIGRT RAG+ G A S Sbjct: 301 AARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLV 345 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 172/485 (35%), Positives = 255/485 (52%), Gaps = 41/485 (8%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L + P L L ++GY +P+Q A+P +LAG D+ QA+TGSGKTAAFGL Sbjct: 1 MTTFADLGLSAPV-LEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRL-ARFLPNTKILTLCGGQPFGMQRDSL 119 L++ +D S QALVL PTREL QV LR AR ++ + GG P Q+ L Sbjct: 60 LMEYVDPSDRDVQALVLTPTRELCIQVTQALRSYGAR--KGIDVVAVFGGAPIRSQQAQL 117 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V T GR+ D + + ++ L +V+DEAD MLD+GF + ++ ++ P SRQ Sbjct: 118 RAGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQ 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT P I +S R +P+ +++ + T + +EQ E S + K +L +L Sbjct: 178 TALFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLES 237 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P +VF TK C + L + G + +LHGD+ Q RD ++ F +G +LVAT Sbjct: 238 EKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVAT 297 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI S+ VVNF++ P+V+VHRIGRT R G SG AI+F ++ + D Sbjct: 298 DVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKR------D 351 Query: 359 MLQIKLNWQTP------------------------------PANSSIATLEAEMATLCID 388 + I+ + +TP P N A + L + Sbjct: 352 IEAIERHTRTPMAPWTAGARVAALRVEVKPKRHESKPHDAAPTNGDRAATDGARTRLVVA 411 Query: 389 GGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 GG + P D++ A+T GLDG + I V ++ V A A + +Q++G + G Sbjct: 412 GGLAQGIEPKDLIHAITSAAGLDGESVRNIRVLEQFAFLDVPAADAARVVEQVEGTDVDG 471 Query: 449 KTCRV 453 R+ Sbjct: 472 HRLRL 476 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 223/369 (60%), Gaps = 3/369 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 L +LG+ T TPVQAA +PA+LAG DV +A+TG+GKT AFGL L+ ID + + QAL+L Sbjct: 20 LLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLIDSIDPAQRRVQALIL 79 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QVA L A + +IL + GGQP G+Q +L+ ++V TPGR++DH+ Sbjct: 80 APTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDGAQVVVGTPGRVVDHI 139 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 ++GT++LDAL +V+DEAD ML MGF + I+ ++ PA RQT LFSAT P I I+ R Sbjct: 140 KRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTLFSATMPAPIRRIAHR 199 Query: 198 VQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQP-SSCVVFCNTKKDCQ 255 R+P I I + +A I+Q + + K L R++ + + +VF TK Sbjct: 200 HMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAGLDAAIVFARTKAATA 259 Query: 256 AVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVN 315 + +ALN G + L+GD+EQ +R++ + +G V+VATDVAARG+D+ + V N Sbjct: 260 EIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVAARGIDVPRITHVFN 319 Query: 316 FELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSS- 374 ++ D EV+VHRIGRT RAG G AI F P + + I + + Q P ++ Sbjct: 320 YDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERLTGKPVREQKVPDRAAV 379 Query: 375 IATLEAEMA 383 IA E +A Sbjct: 380 IARREERLA 388 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 222/369 (60%), Gaps = 13/369 (3%) Query: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86 T VQ A+P +L G+D+ QA+TG+GKT AF L +L++ID S TQAL++ PTRELA Q Sbjct: 46 TAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILEKIDPSNGSTQALIVTPTRELALQ 105 Query: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDA 146 + E+++L +P+ +L + GGQ Q LQ I+VATPGRLLDHL++GTV LD Sbjct: 106 ITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQTQIVVATPGRLLDHLRRGTVQLDE 165 Query: 147 LNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIE 206 ++ LV+DEAD+ML +GF + ++ +I PASRQT+LFSAT P+ I +S + ++P +I Sbjct: 166 VSFLVLDEADQMLHIGFLNEMELIISQTPASRQTMLFSATMPDDIRKLSKKHLKEPESIR 225 Query: 207 IDSTDALPP--IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEV 264 I+ T +P IEQ T+ + K L + +P ++FC T + + DAL Sbjct: 226 IEKT-FVPEKAIEQLAIFTTDRAKQNALISRIREDRPFLAIIFCRTIRRATKLYDALKSQ 284 Query: 265 GQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEV 324 S LHGDL Q R++ + +F N + L+ATDVAARGLD++ + V N+++ D E Sbjct: 285 RFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVAARGLDVEGVTHVYNYDIPQDSES 344 Query: 325 HVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMAT 384 +VHRIGRT RAG GLA++F A ++ I L I+L P S AT A Sbjct: 345 YVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELNIRL-----PKEESTAT-----AN 394 Query: 385 LCIDGGKKA 393 DG K + Sbjct: 395 TTADGEKSS 403 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 224/368 (60%), Gaps = 1/368 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + LGY + T +Q+ +P +LAG+D+ QA+TG+GKTAAF L +L ++D L Sbjct: 16 LSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSRLDPDL 75 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 + Q LVL PTRELA QVA +R A L +L + GGQ +G+Q L+ P +IV T Sbjct: 76 RKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKRNPQVIVGT 135 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DH+++GT++LD++ LV+DEAD ML+MGF++ ID + APA RQ LFSAT P Sbjct: 136 PGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVALFSATMPP 195 Query: 190 AIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 AI ++ DP+ ++I +++ + IEQ + K+ +L R++ L ++F Sbjct: 196 AIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMELEPFDGLLIFV 255 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 TK + D L G +A L+GD+ Q R++T+ R G VLVATDVAARGLD++ Sbjct: 256 RTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDVAARGLDVE 315 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQT 368 + VVN+++ DP +VHRIGRT RAG +G AI P E I +++ + Sbjct: 316 RISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIERVIRRPIPSME 375 Query: 369 PPANSSIA 376 PP+ ++++ Sbjct: 376 PPSAAALS 383 >UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R9Z2_9FIRM Length = 472 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 168/460 (36%), Positives = 241/460 (52%), Gaps = 23/460 (5%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 L+ LGY VQ A +P +LA +DV VQAKTGSGKTA+F + +LQQ+ + Q+L+L Sbjct: 16 LDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQQLIWNEKLPQSLIL 75 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA Q+ E ++ K L + G PF Q+ LQ H+I ATPGR+LDHL Sbjct: 76 APTRELAMQIQTEFDQIGA-KKRIKSLAIYGKFPFRFQKQDLQQRTHVICATPGRILDHL 134 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 ++ T ++ +V+DEAD MLDMGF D ++ V+ + P R T LFSAT P+ I ++ R Sbjct: 135 REHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTALFSATMPKEIIQLANR 194 Query: 198 VQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 DPL+I +++ D IE Y+ + + K L LL S ++F T++ + Sbjct: 195 FLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLLGKETVESAILFVRTQERVEN 254 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + L LHG L Q +R L F +G R+LVA+DVAARG+DI + V+N Sbjct: 255 IYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVAARGIDIADISHVINV 314 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQ--------- 367 + E ++HR+GRTAR SG AISF + ++ + D L L+ + Sbjct: 315 DFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEKLMQLEDYLGYSLSMRDASTELLTQ 374 Query: 368 ----------TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 + A L ++ + I GK K+R GD+ GAL G+ D+G Sbjct: 375 DYDLSYLSQSSERKEDKGAALRKDVLRIYIGAGKAKKLRAGDIAGALCQLEGICFDDVGV 434 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 I V H YV + A K L+ +IKGK RV + K Sbjct: 435 IQVQEHHSYVDILHGKGEVALKSLK--RIKGKEVRVEIAK 472 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 139/343 (40%), Positives = 209/343 (60%), Gaps = 3/343 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN L P + + GY T +Q+A +P ++ G DV Q++TG+GKTAAF + +++ Sbjct: 3 FNELN-LSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPIIE 61 Query: 64 QIDAS-LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++ + + QAL+L PTRELA QV E+R+ ++ + + + GGQ Q L+ Sbjct: 62 MLEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELKKG 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+V TPGR+LDH+++ T+ D LV+DEAD ML+MGF + I+ VI P RQT+L Sbjct: 122 ADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTVL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I I+ + Q +P+ I+ T P IEQ +Y + K +L +L+S+ P Sbjct: 182 FSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLISMQNP 241 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++FCNTKK + L G A +LHGD++Q R + F G +LVATDVA Sbjct: 242 HLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDVA 301 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISF 344 ARG+D+ S+++V N++L + E +VHRIGRT RAG GLA++ Sbjct: 302 ARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTL 344 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/451 (36%), Positives = 243/451 (53%), Gaps = 36/451 (7%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ L L P L L E+GY PVQAA ++ G+DV VQ++TGSGKTA FG+ Sbjct: 61 LPSFAELG-LQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIP 119 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q IDA+ QAL+L PTRELA QV+ E+ +LA+ I + GG P Q D+L Sbjct: 120 VVQHIDAASKGAQALILAPTRELALQVSREIAQLAK-PKGLHIEPIYGGAPIKPQMDALA 178 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA--SR 178 ++ TPGR+LDHL++ T+ + L++DE D ML MGF + I+ +I PA +R Sbjct: 179 AGAQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENR 238 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 QT+LFSAT P+ I I+ R DP I + + + ++ I+ +Y S + L ++L Sbjct: 239 QTVLFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLR 298 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 P S ++FCNT++D V L G A ++ DL QRDR++ + R + + LVA Sbjct: 299 AESPDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVA 358 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARG+DI L V+N+ PEV+VHR GRT RAG SG+AIS P E + Sbjct: 359 TDVAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRE------LG 412 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 +KL ++ P + T E EM L +GA + Sbjct: 413 SFYYLKLIYKIRPEERDLPTNE-EMGILD------------------------EGARFER 447 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 +A + A +A+A + W+ +G +I G Sbjct: 448 VAALVSEEPGADSRALARRIWQSDEGERIFG 478 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/331 (39%), Positives = 205/331 (61%), Gaps = 4/331 (1%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ--TQAL 75 L+E+G+ T +Q A+PAI +G DV +++TG+GKT AF + +++ID + Q L Sbjct: 19 LDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPAIEKIDIEQEKPTAQVL 78 Query: 76 VLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLD 135 ++CPTRELA Q E+++L +++P K++ + GG Q L+ A HI++ TPGR+ D Sbjct: 79 IICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLKKA-HIVIGTPGRIKD 137 Query: 136 HLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAIS 195 HL++ T+ L + +V+DEAD ML MGF + ID +++ AP +RQT+LFSAT P AI I Sbjct: 138 HLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQTVLFSATMPPAIMNII 197 Query: 196 GRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDC 254 ++PL I+ID + I Q + + K +L LL + ++FCNTK+ Sbjct: 198 DTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGSKLTIIFCNTKRMV 257 Query: 255 QAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 + L + G SA LHGD+ Q +R + + F N +LVATDVAARG+D+K +E V+ Sbjct: 258 DDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAARGIDVKDVEYVI 317 Query: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 N+++ + E ++HRIGRTAR G +G +I+ Sbjct: 318 NYDIPQNSEYYIHRIGRTARGGKTGTSITMT 348 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 143/363 (39%), Positives = 215/363 (59%), Gaps = 2/363 (0%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ 73 + L+ LG+ MTPVQ +P +L + D+ A+TG+GKTAAFG+ L+Q D L +TQ Sbjct: 14 MKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLIQLTDTRLKRTQ 73 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133 ALVLCPTREL QVAG+L + R++ KI+ + GG Q + L+ ++VATPGRL Sbjct: 74 ALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELRKGAQVVVATPGRL 133 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 D +++G V L ++ +V+DEAD ML MGF D ++ ++ P S+ TLLFSAT P +AA Sbjct: 134 HDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLLFSATMPREVAA 193 Query: 194 ISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKK 252 I+ +DPL I + +A ++ +Y S++ + L+R+ ++ ++FC T+ Sbjct: 194 IAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADMNPELYAIIFCRTRL 253 Query: 253 DCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLEL 312 + + + D L E G SA +LHGDL Q RD + +F + + R+LVATDVAARGLD+ L Sbjct: 254 ETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVATDVAARGLDVNDLTH 313 Query: 313 VVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPAN 372 V+N+ L + + HR GRT RAG G++I+ E + I L+ P+ Sbjct: 314 VINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIERCLKKNFEEGRIPSG 373 Query: 373 SSI 375 I Sbjct: 374 HEI 376 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 220/375 (58%), Gaps = 2/375 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + FS + ++ P L L++LGY T T +QA +P ILAG+D+ QA+TG+GKTAAF L L Sbjct: 19 SGFSEMGLIKPV-LKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPL 77 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +ID L + Q LVL PTRELA QVA + A + +L + GGQ + Q + L+ Sbjct: 78 LSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR 137 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H+IV TPGRL+D +++G + L + TLV+DEAD ML MGF D ++ ++ P RQ Sbjct: 138 GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVA 197 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I I+ + DP + I T I Q+F+ K+ L R+L Sbjct: 198 LFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAET 257 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK + + L G +A++L+GD+ Q+ R++T+ RF G +LVATDV Sbjct: 258 FDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDV 317 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V+N+++ E +VHRIGRT RAG +G AI F +P E +I Sbjct: 318 AARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTT 377 Query: 361 QIKLNWQTPPANSSI 375 + ++ P+ +I Sbjct: 378 RQQIEMMKLPSTEAI 392 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 220/377 (58%), Gaps = 3/377 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F+ N L P L + ELGY + T +Q +P IL+ +D+ A+TG+GKTAAF L Sbjct: 1 MNLFTETN-LSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ID + + Q LVLCPTREL Q++ +++ ++++ + K + GG Q SL Sbjct: 60 PILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + P IIV TPGR++D + + + A++ LV+DEAD ML MGF D ++ ++ P ++Q Sbjct: 120 KDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT + + IS P I + S + + I ++Y + K L+RL+ Sbjct: 180 TFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + Q V D L + G +A +LHGDL Q RD + +F + +LVAT Sbjct: 240 NPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ SL V++F L DPEV VHR GRT RAG G++++ PEE+++ I Sbjct: 300 DVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKS 359 Query: 359 MLQIKLNWQTPPANSSI 375 +I+++ +T P I Sbjct: 360 ATKIEIHERTIPTGDDI 376 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/336 (44%), Positives = 204/336 (60%), Gaps = 2/336 (0%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L + ++G+ +P+Q A+P +LAG D QA+TG+GKTAAFGL +L ++ TQA Sbjct: 15 LKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDKLTPER-NTQA 73 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 L+LCPTRELA QVA EL +LA IL + GGQP Q +L ++V TPGR++ Sbjct: 74 LILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAKGVQVVVGTPGRVM 133 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 DHL++GT+ L + V+DEAD MLDMGF + I+ ++ PAS Q +LFSAT P AI + Sbjct: 134 DHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRVLFSATVPPAIREL 193 Query: 195 SGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 S R R+P + + +P IEQ +YE K+ L RLL +VFC+TK+ Sbjct: 194 SKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSRAFHKALVFCSTKRG 253 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 V L + G + SLHG+L Q RD+ + RF VLVATDVAARGLD+ ++ V Sbjct: 254 ADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAARGLDVDDVDAV 313 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 +N+++ D E +VHRIGRT RAG G A +F E Sbjct: 314 INYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMRE 349 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 146/353 (41%), Positives = 207/353 (58%), Gaps = 6/353 (1%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 LN+LGY +P+Q +P +L G DV A+TGSGKTAAF L LL ID L Q ++L Sbjct: 21 LNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLLNNIDLKLKLPQIIIL 80 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA Q+ L++++ I+ L GGQ + +Q SL+ P I+V TPGR+LD L Sbjct: 81 TPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSLKRNPQIVVGTPGRILDLL 140 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 K ++L + + V+DEAD ML MGF + ++++ + QT+LFSAT P AI I+ R Sbjct: 141 NKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQTILFSATMPAAIHRITKR 200 Query: 198 VQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 + P I I S + P I+Q ++ KI L R L + + ++F TK Sbjct: 201 FMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFLEVEIFDAVIIFVRTKNATLE 260 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 V D L + G ++ SL+GD+ Q R++TL RF G +LVATDVAARGLD+ + LV+N+ Sbjct: 261 VSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVATDVAARGLDVDRISLVINY 320 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-----RANIISDMLQIKL 364 ++ D E ++HRIGRT RAG +G A+ F E + NI + QIKL Sbjct: 321 DIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNIERNIKEKLSQIKL 373 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 219/365 (60%), Gaps = 7/365 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN+ P L+ L GY TP+QA A+P L G+D+ + A+TGSGKTAAF + +L Sbjct: 46 FTDLNIAKPI-LSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVLD 104 Query: 64 QID-ASLFQ--TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ A+ F T+AL+L PTRELA QV +R ++ + + L GG P+ Q +L+ Sbjct: 105 RLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALK 164 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IVATPGRLLDH+ G V L +L LV+DEADRMLDMGF+D I D++R AP RQT Sbjct: 165 KGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQT 224 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQ-FYETSSKGKIPLLQRLLSLH 239 ++ SATW + I+ ++P + I A IE++ +Y K LL +++ Sbjct: 225 IMCSATWDGPVGKIAASFTKNPERVSIKVESAH--IEEKVYYCDDFDHKNRLLDKIVCHK 282 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++F TK+ + + L E G A LHGDL Q R++ + NG ++LVATD Sbjct: 283 DMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATD 342 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ +L V+N++L E +VHRIGR RAG +G+AIS C+ ++ + N I+ Sbjct: 343 VAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAINRY 402 Query: 360 LQIKL 364 L K+ Sbjct: 403 LDRKM 407 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 145/374 (38%), Positives = 222/374 (59%), Gaps = 11/374 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGL 61 +F L L A L + G+ T +Q +P +L+G D+ Q++TG+GKTAAF L + Sbjct: 2 SFENLG-LSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ ID QA++L PTRELA QVA E++ L R + + GGQP G Q +L+ Sbjct: 61 IEAIDEKEKSVQAIILAPTRELALQVADEIKSL-RGRKRVYVYAVYGGQPIGPQIRALER 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H++V TPGR+LDH+++GT+ L + ++DEADRMLDMGF D I+ + R P ++ L Sbjct: 120 GTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVL 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQ 240 +FSAT P I ++ R D I++ S + +P +EQ++ E K L+++LS Sbjct: 180 MFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILS--D 237 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VFC TK++ + + + L + G SA +L+GD+ Q R++T RF R+LVATDV Sbjct: 238 DFYGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDV 297 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS--- 357 AARGLD++ + +VN+ L E +VHRIGRT R G G A++F P E +R I+ Sbjct: 298 AARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIASVA 357 Query: 358 --DMLQIKLNWQTP 369 D+ + +L+ + P Sbjct: 358 GVDIQKSELSEELP 371 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 267 bits (683), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 147/364 (40%), Positives = 216/364 (59%), Gaps = 2/364 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F++L LP L + E GY +P+Q ++P +L GKDV A+TG+GKTAAF L L Sbjct: 6 TGFASLG-LPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L + + + Q LVL PTRELA QVA + ++ N K+ ++ GG FG Q +L+ Sbjct: 65 LARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQ 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P +V TPGR++DH+++GT+ L+ + +V+DEAD ML MGF D +D V+ P RQ Sbjct: 125 GPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIA 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I A++ + R+P I I S A IEQ+++ K L R+ + Sbjct: 185 LFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSE 244 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK+ + V D + G +L+GD+ Q R++ + R G +LVATDV Sbjct: 245 FDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + VVN+++ +D E +VHRIGRT RAG SG AI F P E + + I + Sbjct: 305 AARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVT 364 Query: 361 QIKL 364 + K+ Sbjct: 365 RKKI 368 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 267 bits (683), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 143/348 (41%), Positives = 215/348 (61%), Gaps = 2/348 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 AF++L LP L+ + +G+ + T +QA +P +LAGKDV +A+TG+GKTAAFGL L Sbjct: 16 AFASLG-LPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPAL 74 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +ID S+ + Q +VL PTRELA QVA + + + ++ TL GGQ +G Q L+ Sbjct: 75 AKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERG 134 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGRL+DHL++ ++ LD L V+DEAD ML+MGF + I ++ P + Q L Sbjct: 135 AQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCL 194 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI I+ R +DP I++ + I Q ++ S K+ L+R+ + + Sbjct: 195 FSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEY 254 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + ++F T+ D + + L G AL+L+GDL Q R++ + + +G + +LVATDV Sbjct: 255 DAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVV 314 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 ARGLDI + LV+N++L D E +VHRIGRT RAG G++I+F P E Sbjct: 315 ARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPRE 362 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 45/83 (54%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 N P + + + + T ++ GK+ RPGD++GA+ +I LD + IG I +H H Sbjct: 498 NRDEKPRKAKVNRSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYIGAINLHDKH 557 Query: 425 VYVAVRQAVAHKAWKQLQGGKIK 447 +V + + + + QL+G +++ Sbjct: 558 SFVQLPKGIPTDLFNQLKGVRVR 580 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 267 bits (683), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 142/351 (40%), Positives = 215/351 (61%), Gaps = 2/351 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 LN+ TPVQ A+P +LA +DV QA+TG+GKT AF L +L++++ QAL++ Sbjct: 18 LNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALII 77 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA Q+ E ++LA + IL GGQ Q L+ + HII+ TPGRLLDHL Sbjct: 78 TPTRELAIQITAETKKLAE-VKGINILAAYGGQDVEQQLRKLKGSIHIIIGTPGRLLDHL 136 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 ++ T++L L+ LV+DEAD+ML MGF ++D++ P RQ + FSAT P + ++ + Sbjct: 137 RRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFSATMPNQVRTLAEQ 196 Query: 198 VQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 +DP+ I++ S L I Q ET+ +GK LL +L + P ++FC TK+ A Sbjct: 197 YMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEYNPFMAIIFCRTKRRAIA 256 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + +AL +G ++ LHGDL Q R++ + F + LVATDVAARGLDI+ + + N+ Sbjct: 257 LNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDVAARGLDIEGVTHIFNY 316 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQ 367 ++ D E ++HRIGRT RAG +G+AI+F + II ++++ L+ Q Sbjct: 317 DIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKVIKMDLDVQ 367 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 267 bits (683), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 139/333 (41%), Positives = 210/333 (63%), Gaps = 1/333 (0%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 + ++G+ T +P+QAA +P + G+DV A+TG+GKTAAF L +L ++D S + QALVL Sbjct: 169 VKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQALVL 228 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QVA + A L +L + GGQ +G+Q L+ HI+V TPGR++DHL Sbjct: 229 SPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVIDHL 288 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 ++G++ L L LV+DEAD ML+MGF + ++ ++ P +QT LFSAT P +I +S + Sbjct: 289 ERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLSKQ 348 Query: 198 VQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 DP + I S I QQ+ + K+ L R+L + + + ++F TK++ + Sbjct: 349 YLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNTEE 408 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + + L G SA +++GD+ Q R++T+ + +G +LVATDVAARGLD++ + VVN+ Sbjct: 409 LAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVVNY 468 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 ++ D E +VHRIGRT RAG SG AI F P E Sbjct: 469 DIPHDTESYVHRIGRTGRAGRSGEAILFVTPRE 501 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 42/73 (57%) Query: 381 EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQ 440 EMA I GK+ ++RPG ++GA+ + GL+ D GKI++ H V + + + ++ Sbjct: 632 EMAVYKIAVGKRQQVRPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPADLPMEVFEA 691 Query: 441 LQGGKIKGKTCRV 453 L+ ++ G+ ++ Sbjct: 692 LEDTRVSGQLIKI 704 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 141/340 (41%), Positives = 213/340 (62%), Gaps = 2/340 (0%) Query: 12 PAQLTN-LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLF 70 PA L ++ELG+ T + +QA A+P +L G+DV A+TG+GKTAAFGL LL ID SL Sbjct: 92 PAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLAAIDPSLR 151 Query: 71 QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATP 130 + QALVL PTRELA QVA + A + ++ L GG P+G Q +L ++V TP Sbjct: 152 EVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALARGAQVVVGTP 211 Query: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 GR++DH+++ + LD + V+DEAD ML MGF++ +++++ +P +RQ LFSAT P A Sbjct: 212 GRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVALFSATMPAA 271 Query: 191 IAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 I ++ +DP+ + + + + + Q + + + L R+L+ + +VF Sbjct: 272 IQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLATSDAEAAIVFVR 331 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 T+ + V AL G A S+ GD+ Q++R++ + R +GS +VLVATDVAARGLD++ Sbjct: 332 TRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVAARGLDVER 391 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 + LVVNF++ + E +VHRIGRT RAG SG A++F P E Sbjct: 392 IGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHE 431 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%) Query: 376 ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAH 435 A E + + G RP ++GA+TG+ GL G DIGKI + P V +R +++ Sbjct: 545 AATERGYTSYKVGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQIRGSLSP 604 Query: 436 KAWKQLQGGKIKGKTCRV 453 + +++ K+ G+ R+ Sbjct: 605 EQMERISRAKVGGRELRI 622 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 226/383 (59%), Gaps = 4/383 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ LN LP L+ + E+G+ T TP+Q A+P +L G+D+ A+TG+GKTAAFGL Sbjct: 4 MTTFADLN-LPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLP 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L ID QA+VL PTRELA Q A + A +P K++T+ GG + Q L+ Sbjct: 63 MLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLK 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS--R 178 ++V TPGR++D ++KG + L+ ++ LV+DEAD ML MGF++ ++ + P S R Sbjct: 123 SGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKR 182 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLS 237 T LFSAT P+ I ++ + DP+ IE+ + + I Q + K K+ L R+L+ Sbjct: 183 ITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLA 242 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF T+ D V + G +A ++ GD+ Q +R++ + R +GS VLVA Sbjct: 243 TRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVA 302 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARGLD++ + LV+NF++ + E +VHR+GRT RAG +G +++F P+E R I Sbjct: 303 TDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQIE 362 Query: 358 DMLQIKLNWQTPPANSSIATLEA 380 + K+ P+ ++ A Sbjct: 363 KLTGTKMEEIVIPSPREVSEFRA 385 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 44/68 (64%) Query: 387 IDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKI 446 ++ GK+ ++PG ++GA+TG+ G++GAD+G+I ++P V + ++ KA ++ + Sbjct: 497 VEVGKRDGVKPGAIVGAITGEGGVNGADLGRIDIYPTFSLVELSGELSEKAASKISKAFV 556 Query: 447 KGKTCRVR 454 G+ R++ Sbjct: 557 SGRQLRIK 564 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/345 (44%), Positives = 204/345 (59%), Gaps = 7/345 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ N L + NL +LG+ TP+Q A+P +LAG D+ QA+TG+GKTAAFGL LL Sbjct: 57 FTDFN-LKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLN 115 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNT--KILTLCGGQPFGMQRDSLQH 121 ID S QALVL PTRELA QV L A + + +L + GG + Q L+ Sbjct: 116 NIDFSKKCVQALVLAPTRELAQQVGDAL---ATYSGDDGRNVLVVYGGSSYQAQVGGLRR 172 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 ++V TPGRLLD +++G++ LD L TLV+DEAD ML MGF D I+ ++ P RQT+ Sbjct: 173 GARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTM 232 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT + +I+ R P +I I + IEQ++Y ++ KI + R+ + Sbjct: 233 LFSATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVET 292 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S ++F T+ + + L G +A L GDL Q R + L RF G +VLVATDV Sbjct: 293 VESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDV 352 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 AARGLDI + V N++L DPEV+VHRIGRT RAG SG AIS Sbjct: 353 AARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLV 397 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 214/367 (58%), Gaps = 24/367 (6%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F+TL L A L L+EL Y T TPVQA A+PA LAG+D+ V ++TGSGKTAAF L Sbjct: 58 SGFATLG-LDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPA 116 Query: 62 LQQIDA---------------------SLFQTQALVLCPTRELADQVAGELRRLARFLPN 100 +Q+I S Q LVL PTRELA QV + R L Sbjct: 117 IQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRR 176 Query: 101 TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD 160 ++ GG P+ Q +L P I+VATPGRLLDH+ G + L AL LV DEADRMLD Sbjct: 177 IVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLD 236 Query: 161 MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQ 219 MGF+D ID ++ PA+RQTL+FSAT IA ++ R RDP IEI + A IEQ+ Sbjct: 237 MGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQR 296 Query: 220 FYETSSKG-KIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR 278 + T K LL LL +VF TK+D ++ + L++ G SA +LHGD+ Q Sbjct: 297 LHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQG 356 Query: 279 DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNS 338 R++TL G+ RVLVATDVAARG+D+ + VVNF+L E +VHRIGRT RAG S Sbjct: 357 ARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRS 416 Query: 339 GLAISFC 345 G AI+ Sbjct: 417 GTAINLV 423 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 157/374 (41%), Positives = 215/374 (57%), Gaps = 16/374 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L V P Q+ L GY TP+Q A+P IL GKD+ A+TG+GKTAAF + Sbjct: 1 MTDFDKLGVAKPFQIA-LKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVP 59 Query: 61 LLQQIDASLFQ-----TQALVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFG 113 LLQ++ S ++ ++L+L PTRELADQ+ ++ A TK+ T C GG PF Sbjct: 60 LLQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAG---RTKMYTSCVVGGVPFP 116 Query: 114 MQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF 173 Q +LQ ++VATPGRLLD +K VS D L V+DEAD+MLD+GF ++++ Sbjct: 117 PQFHALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYL 176 Query: 174 APASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIE---QQFYETSSKGKIP 230 P RQTL FSAT P I +S R +P +E+ + +E QQ K P Sbjct: 177 LPKKRQTLFFSATMPREIRDLSERFLTNP--VEVSTAPPATTVETVTQQIAHLEKDAKFP 234 Query: 231 LLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 LL+ LL + +VF TKK + LN G A ++HGD+ Q +R +TL +F G Sbjct: 235 LLKELLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRG 294 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + LVATDVAARG+D+ + V+NF++ E +VHRIGRTARAG SG AI+FC PE+ Sbjct: 295 KLKTLVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDR 354 Query: 351 QRANIISDMLQIKL 364 I ++ K+ Sbjct: 355 GMLRAIQKLIGKKI 368 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 148/396 (37%), Positives = 227/396 (57%), Gaps = 8/396 (2%) Query: 18 LNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALV 76 + LG+ TP+Q A+P ++ G +D A+TG+GKT A+GL L+Q ID S+ + QA+V Sbjct: 16 VESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPLIQSIDLSIPRPQAIV 75 Query: 77 LCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDH 136 +CPTREL Q+AG+LR A+++ + ++ + GG Q +++ II ATPGRLLD Sbjct: 76 ICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGGAQIIAATPGRLLDL 135 Query: 137 LQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISG 196 + + + + +V+DEAD ML+MGF + I+ ++ P R+T LFSAT P+ +AAI+ Sbjct: 136 INRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWLFSATMPKGVAAIAA 195 Query: 197 RVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQ 255 + Q +P+ + + + A P I Y +K + L+R+L +VFC T+KD Q Sbjct: 196 KYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDMFGLVFCRTRKDTQ 255 Query: 256 AVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVN 315 + +AL G +A +LHGDL Q RDQ + RF + +VL ATDVAARGLD+ + V++ Sbjct: 256 EIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAARGLDVDDISHVIH 315 Query: 316 FELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSI 375 + L DPE + HR GRTARAG G +I+ P E R + + + P I Sbjct: 316 YVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKFSFQLDSLPQGRDI 375 Query: 376 -----ATLEAEMATLCIDGGKKAKMRPGDVLGALTG 406 A L ++A++ + A+ P D+L A G Sbjct: 376 CQKQVAGLAEKLASVSVRENDIAEYMP-DILEAFEG 410 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 263 bits (673), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 226/408 (55%), Gaps = 6/408 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILA-GKDVRVQAKTGSGKTAAFGL 59 M F L V P L + E+GY PVQ +P +L G DV A+TG+GKTAAFGL Sbjct: 1 MKTFEELGVSPEI-LKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q++D QAL+LCPTREL Q+AG+L ++++ KIL + GG Q L Sbjct: 60 PLIQKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRML 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + HIIVATPGRL+D +++ L+ + +VMDEAD ML+MGF+D+I+ ++ P R Sbjct: 120 KTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSL 238 TL+FSAT I+ I+ + D I I + + + Y +K K L+R+ Sbjct: 180 TLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRIADY 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+K+ Q + D L + G +A SLHG+L Q RD + +F ++LVAT Sbjct: 240 YPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N+ L D E + HR GRT RAG +G++I+ E + I Sbjct: 300 DVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREIER 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTG 406 ++ K P+ I E ++ L ID +K K+ ++ L G Sbjct: 360 IINKKFIMGEMPSGKQIC--EQQLIKL-IDDIEKVKVNDEEIESFLPG 404 >UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GSG9_SORC5 Length = 812 Score = 263 bits (673), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 158/383 (41%), Positives = 222/383 (57%), Gaps = 13/383 (3%) Query: 6 TLNVLP-PAQL-TNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 T +VLP ++L L E+GY+ TPVQ A + G+D VQA+TG+GKTAAFGL ++ Sbjct: 29 TFDVLPLSSELRETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVD 88 Query: 64 Q-IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + SL Q Q L LCPTRELA QV+ E+ RL + K++ + GG P Q D+L Sbjct: 89 HAVKRSLAQAQVLALCPTRELALQVSAEVERLGKRK-GIKVVAVYGGAPMQRQIDALAAG 147 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +IV TPGR+LDHL++GT+ + LV+DE D ML MGF + ++ P RQTLL Sbjct: 148 AQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTLL 207 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKG-KIPLLQRLLSLHQP 241 FSAT P I I+ R P I + S DA+ ++ Q Y G K+ L R++ + P Sbjct: 208 FSATLPPDIERIARSKLRSPEFITL-SGDAVGALQIQHYVYLITGDKLTSLVRIIEVENP 266 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + V+FCNTK + +AV AL G A L+GDL Q DR++ + G R LVATDVA Sbjct: 267 ENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVATDVA 326 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+DI L V+N++ D E +VHR GRT RAG +G AI+ P++ + + Sbjct: 327 ARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQD------VGPLYI 380 Query: 362 IKLNWQTPPANSSIATLEAEMAT 384 ++L ++ P + + E E+ T Sbjct: 381 LRLTYKIRPLEKQLPS-EGELKT 402 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/336 (41%), Positives = 204/336 (60%), Gaps = 3/336 (0%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L ++ + G+ +P+QAAA+P ILAG+D+ QA TG+GKTAAFGL L I+ + Sbjct: 26 LRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALNNINPN-DGVGI 84 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 LV+ PTRELA QV+ EL + R + + +T+ GG + Q D +Q ++VATPGRLL Sbjct: 85 LVITPTRELATQVSDELFKYGRNI-GARTVTVYGGSSYNRQIDLIQRGASVVVATPGRLL 143 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 D L+K + A + +V+DEAD MLDMGF D I+++ + P++RQTLLFSAT P+ I + Sbjct: 144 DILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLFSATMPKPIKLL 203 Query: 195 SGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 + R+ +P I I + I Q++Y + + RL+ +VFC TK + Sbjct: 204 AERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEACQKSIVFCRTKSE 263 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 + + L+ G A LHGD+EQR R+ + F N +VLVATDVAARG+ + ++ V Sbjct: 264 VDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVAARGIHVDNISHV 323 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 N+ + +DPE +VHRIGRT RAG G AI+ P E Sbjct: 324 FNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLE 359 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/357 (38%), Positives = 209/357 (58%), Gaps = 1/357 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + +G+ +P+Q +P ++AG+DV A+TG+GKTAAF L +L +++ Sbjct: 138 LSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSRLNLKS 197 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 + QALVL PTRELA QVA A + IL + GGQP+G Q L+ H++V T Sbjct: 198 RKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAHVVVGT 257 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DHLQKG++ + L +V+DEAD ML+MGF + ++ ++ P +Q LFSAT P Sbjct: 258 PGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFSATMPS 317 Query: 190 AIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 AI +S R P + + ST IEQ + + K+ L R+L + + ++F Sbjct: 318 AIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDAMIMFV 377 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 TK D + + + L G A +++GD+ Q R++T+ + +G +LVATDVAARGLD++ Sbjct: 378 RTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVE 437 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLN 365 + V N+++ D E +VHRIGRT RAG SG A+ F P E + I + +LN Sbjct: 438 RITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIERATKSRLN 494 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 154/340 (45%), Positives = 208/340 (61%), Gaps = 14/340 (4%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ-IDASLFQTQA------ 74 GY T +QA A+PAILAG+D+ A+TG+GKTAAF L LLQ+ ID S Q+ Sbjct: 44 GYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKAKRAS 103 Query: 75 -LVLCPTRELADQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPG 131 LVL PTRELA QV + +++ NT + + + GG Q L +IVATPG Sbjct: 104 VLVLAPTRELAVQVNTNV---SQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATPG 160 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RLLDH+++GT++L + LV DEADRMLDMGF D I+ +++ PA RQTLLFSAT+ AI Sbjct: 161 RLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSAI 220 Query: 192 AAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 +S ++ + PL IE+D + A IEQ Y S+ K LL L++ +VF Sbjct: 221 FELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCHLINKSAWQQVLVFSRK 280 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 K+ + + G A + HGDL Q R+Q L F G + LVATDVAARGLDI L Sbjct: 281 KQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVEL 340 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 ++VVN+E+ + E +VHRIGRT RAGN+G AI+ + ++A Sbjct: 341 KVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDA 380 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 136/339 (40%), Positives = 207/339 (61%), Gaps = 2/339 (0%) Query: 12 PAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ 71 P + + +L Y T +Q A+P I+ GKD+ QA+TG+GKTAAF L +L +D Sbjct: 12 PELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILNALDEGKRD 71 Query: 72 TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPG 131 QAL+L PTREL+ Q+A E+ +L + L N +L+L GG Q L+ I+V TPG Sbjct: 72 IQALILTPTRELSIQIAKEVEKLGKHL-NVNVLSLHGGTDIDKQLSKLKETVQIVVGTPG 130 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 R+LDH+++G++ ++TLV+DEAD+M++MGF + ++ VI P+ RQ LLFSAT P+ + Sbjct: 131 RVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSATMPDLV 190 Query: 192 AAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 ++ R + P I+I+ + IEQ +Y + K L +L QP +VF NT Sbjct: 191 KKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQEQPFLTIVFANT 250 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 + Q + L E G SA +L+GDL Q R+Q + +F + L+ATD+AARGLD++ + Sbjct: 251 QVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIAARGLDVEGV 310 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 V+N++L D + ++HR+GRT RAG G AIS +P + Sbjct: 311 THVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQ 349 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 219/377 (58%), Gaps = 3/377 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M+ F L + P L +LGY T +Q A+P I++ + D++ A+TG+GKTAAF L Sbjct: 1 MSTFLELGLKEPINKA-LTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ +D++ QA++L PTRELA Q+ ++ ++LP+ K+ T+ GG Q SL Sbjct: 60 PILELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR +D +++ + L + LV+DEAD ML+MGF D +D V+ P ++Q Sbjct: 120 KRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT+P+ + +I+ P+ I + + ++Y + + + P L+R+ L Sbjct: 180 TLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADL 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+++ Q V D L + G SA +LHGDL Q RD + +F + ++LVAT Sbjct: 240 NPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N +L E + HR GRT RAGN+G++I +E + I Sbjct: 300 DVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEK 359 Query: 359 MLQIKLNWQTPPANSSI 375 ++Q K P+ I Sbjct: 360 IIQKKFTEAKVPSGKDI 376 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 150/416 (36%), Positives = 233/416 (56%), Gaps = 10/416 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI-DASLFQTQ 73 L +L+ GY TP+Q AA+P ++ G+D+ QA+TG+GKTAAF L L++++ D + Sbjct: 63 LNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLADNKELNAK 122 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133 LV+ PTRELA QVA + + N K + + GG + Q +L+ ++V TPGR+ Sbjct: 123 VLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKVDVVVGTPGRI 182 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 +DH+++GT ++++N LV+DEAD ML+MGF + I+ +I P ++Q +LFSAT P I Sbjct: 183 MDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSATMPNEIRN 242 Query: 194 ISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKK 252 I+ + DP I I S I Q+F K+ L+R+L L+ ++F TK Sbjct: 243 IAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGVIIFVRTKL 301 Query: 253 DCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLEL 312 ++ +AL +G S L+GD+ Q R+ T+ R G +LVATDVAARGLD++ ++L Sbjct: 302 LTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARGLDVERIKL 361 Query: 313 VVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPAN 372 VVN++ +D E + HRIGRT RAG SG AI F E + + + K+ P+N Sbjct: 362 VVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENSTRTKIEEINIPSN 421 Query: 373 SSIATLEAEM-------ATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVH 421 I E ++L + ++ K DVL L +D ++I A++ Sbjct: 422 KIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMDDSNIAMAAIN 477 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 150/347 (43%), Positives = 205/347 (59%), Gaps = 6/347 (1%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS- 68 L P+ L L ELGY T T +QAAA+P + GKD+ A+TG+GKTAAF L +L ++ + Sbjct: 11 LNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILHRLGENR 70 Query: 69 ---LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHI 125 + +AL+L PTRELA Q+ +R AR+L + + GG P Q L+ P I Sbjct: 71 SYDIRAPRALILTPTRELALQIDNNIRLYARYL-RLRTGVIMGGVPAHPQIKMLRRNPDI 129 Query: 126 IVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSA 185 +VATPGRL+D +G + LD + T V+DEADRMLDMGF D I + P QTLLFSA Sbjct: 130 LVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQTLLFSA 189 Query: 186 TWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244 T I A++ R+ R+P+ IE+ ++ I Q+ K LL L + Sbjct: 190 TLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKENDIKRA 249 Query: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304 +VF TK+ V + L +G SA ++H QR R + L+ F G VLVATD+AARG Sbjct: 250 LVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVATDIAARG 309 Query: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 +D+ + V+N+EL DPE +VHRIGRTARAG SG A+SFC +E + Sbjct: 310 IDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVR 356 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 210/363 (57%), Gaps = 4/363 (1%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 + +L +G+ TP+Q ++P L G D+ QA+TG+GKT AFG+ L++++ Q+ Sbjct: 25 VQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ-GVQS 83 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 L+L PTRELA QVA +LR +R +++T+ GG P Q +L+ P I+V TPGR++ Sbjct: 84 LILAPTRELAMQVAEQLREFSRG-QGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVI 142 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA-SRQTLLFSATWPEAIAA 193 DHL + T+ D ++TL++DEAD M++MGF D + ++ PA RQT+LFSAT P+AI A Sbjct: 143 DHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQA 202 Query: 194 ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSK-GKIPLLQRLLSLHQPSSCVVFCNTKK 252 + + + P I+ + + P ++FY + K L +HQP +VF TK+ Sbjct: 203 LVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 262 Query: 253 DCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLEL 312 + AL G A LHGD+ Q R + L +F N +LVATDVAARGLDI + Sbjct: 263 RVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSH 322 Query: 313 VVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPAN 372 V NF++ D E + HRIGRT RAG G+A++F P E I D K++ PP Sbjct: 323 VYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHR 382 Query: 373 SSI 375 + Sbjct: 383 KEV 385 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/354 (39%), Positives = 211/354 (59%), Gaps = 7/354 (1%) Query: 1 MTAFSTLNVLPPAQ--LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFG 58 MT T N L L +N++G+ +P+Q+ ++P + G D+ QA+TG+GKTAAFG Sbjct: 1 MTKIKTFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFG 60 Query: 59 LGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 +L + QAL+L PTRELA QV EL R+A+ + IL + GGQP Q + Sbjct: 61 SIILNNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNM-RLNILPIYGGQPIDRQLRA 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L++ I+V TPGR+LDHL++ +++ + + LV+DEAD ML+MGF D I++V++ R Sbjct: 120 LRNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDR 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDP---LAIEIDSTDALPPIEQQFYETSSKGKIPLLQRL 235 QTLLFSAT P+AI +S R + ++IE ++ A I Q +YE + + L R+ Sbjct: 180 QTLLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTA-STITQYYYEIKNSDRFESLCRI 238 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + +P + ++FC TKK + ++ G +HGD+ Q R TL +F + L Sbjct: 239 IDADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFL 298 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 VATDVAARG+D++++ V+N++L D E +VHRIGRT RA G A + P E Sbjct: 299 VATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPRE 352 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 211/371 (56%), Gaps = 4/371 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L ++ P L +N+LG+ TP+Q A+P IL G ++ QA TG+GKTAA+ L Sbjct: 1 MEEFKKLGLITPL-LKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ+I + Q L++ PTRELA QVA E+ +L ++L + L + GGQ Q L+ Sbjct: 60 VLQRIQRGK-KAQVLIVTPTRELALQVADEVAKLGKYL-KVRALAVYGGQAIERQIRGLR 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IV TPGR+LDH+ + T + +++DEAD MLDMGF D I+ ++ +QT Sbjct: 118 QGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQT 177 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P I I + ++ + +P I Q +YE KI L +L+ Sbjct: 178 LLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSE 237 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VFC TKK V + LN G +A LHGD+ QR+R QT+ F G +LVATD Sbjct: 238 LPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATD 297 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V+NF++ +PE ++HRIGRT RAG G AI+ E + I + Sbjct: 298 VAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEA 357 Query: 360 LQIKLNWQTPP 370 + +L + P Sbjct: 358 INKRLKREILP 368 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 154/367 (41%), Positives = 214/367 (58%), Gaps = 8/367 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS + L A L L EL Y T +Q A+PAI+ GKD+ A+TG+GKTAAF L +L+ Sbjct: 3 FSDFD-LSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILE 61 Query: 64 QIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 ++ + QT+ LVL PTRELA+QV ++ A+ LP K L + GG Q + Sbjct: 62 KLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLP-FKTLPVFGGVSSYPQIQA 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I+VATPGRLLD + +SL+ ++TLV DEADRM DMGF I +++ P R Sbjct: 121 LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLS 237 Q LLFSAT+P + ++ + +DPL I+I+ ++ I Q+ K+ LL + Sbjct: 181 QNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFG 240 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK+ L+ +G S +LHGD Q R +TL +F NG ++LVA Sbjct: 241 VESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVA 300 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLDIK L V+N EL PE +VHRIGRT RAGN G+AIS +E + I Sbjct: 301 TDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIE 360 Query: 358 DMLQIKL 364 ++ KL Sbjct: 361 KLIDKKL 367 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/343 (41%), Positives = 201/343 (58%), Gaps = 3/343 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P L + E G+ + +P+Q A+P +L GKD+ QA+TG+GKTAA+GL L +I Sbjct: 22 LRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNRIKVE- 80 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 Q LVL PTRELA QV+ EL +L + L K T+ GG + Q + + VAT Sbjct: 81 DGMQVLVLTPTRELALQVSDELFKLGKHL-GIKTTTIYGGSSYSKQITQVAKGAQVAVAT 139 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGRLLD L+ + + +++DEAD MLDMGF D I+ + P RQTLLFSAT PE Sbjct: 140 PGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTLLFSATMPE 199 Query: 190 AIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 I ++ + Q P ++I +T+ + IEQ +Y + + R+L P ++F Sbjct: 200 PIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYENPFKAIIFT 259 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 TKK+ + L+ G +LHGDL Q+ R+Q L +G ++LVATDVAARGLD+K Sbjct: 260 KTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVK 319 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 L LV+N+ L +D E + HRIGRT RAG SG A++ E++ Sbjct: 320 DLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESR 362 >UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6 Tax=Cystobacterineae RepID=Q1D015_MYXXD Length = 808 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/394 (38%), Positives = 213/394 (54%), Gaps = 30/394 (7%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +N+ P +L L E GY TPVQA A + GKD+ V++KTG+GKTAAFGL LL Sbjct: 30 GFDDMNLSEPIRLA-LAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLL 88 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++I A + +AL+LCPTRELA QVA EL+ LA+ KI + GG Q D+L+ Sbjct: 89 EKIPADERRVRALILCPTRELALQVADELKMLAKHK-GLKIAAIYGGASMKQQEDALEEG 147 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 IIV TPGR+ DH+ +G + LDA + V+DEAD ML+ GF + + ++ P +RQ LL Sbjct: 148 TPIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLL 207 Query: 183 FSATWPEAIAAISGR---------VQRDPLAIE------IDSTDALPPIEQQFYETSSKG 227 FSAT P I + R + D +E D +DA P Y Sbjct: 208 FSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIY------ 261 Query: 228 KIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRF 287 +L +P + ++FCNT+ D V LN G A L+GDL Q++R++ + + Sbjct: 262 -------VLEKEEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKV 314 Query: 288 ANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP 347 G +VATD+AARG+DI LE V+N+ L DP V++HR+GRT R GN G AI+ + Sbjct: 315 KRGEVAFMVATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSG 374 Query: 348 EEAQRANIISDMLQIKLNWQTPPANSSIATLEAE 381 E + IK + + PA L E Sbjct: 375 RELATYTSLEKKYGIKFDKREMPAPEEAMRLWTE 408 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 260 bits (665), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 211/365 (57%), Gaps = 2/365 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 ++FS L + P L + LG+ T + +Q A+PA + G D+ + TGSGKT AF + Sbjct: 5 SSFSALGI-SPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPA 63 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L+ ID Q L LCPTRELA Q+ E+ +LA F+ + + GG F Q D+L+ Sbjct: 64 LECIDPEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRR 123 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 +V TPGR++D ++ G + LD L L++DEAD MLDMGF + I+ + P +QTL Sbjct: 124 GVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTL 183 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT I+ + R ++P+ I I+ T +P IEQ +YE +I +L RLL + Sbjct: 184 FFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGK 243 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF NTKK V D L G LHGD+ Q R++ + F GS R+LVATD+ Sbjct: 244 IKMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDI 303 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD+ ++ VVNFEL DPE +VHRIGRTARAG G AI+F + + I + Sbjct: 304 AARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERFI 363 Query: 361 QIKLN 365 +KL Sbjct: 364 GVKLT 368 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 260 bits (664), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 226/394 (57%), Gaps = 10/394 (2%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTR 81 GY + +Q ++P ILAG D+ QA+TG+GKTAAF L +L +ID S + QAL+L PTR Sbjct: 36 GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTR 95 Query: 82 ELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGT 141 ELA QVA A+ +P ++ + GG P G Q ++++ I+VATPGRL DHL++ Sbjct: 96 ELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDE 155 Query: 142 VSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRD 201 L +N LV+DEAD ML +GF D ++ + + P +RQT+LFSAT P++I AI+ R RD Sbjct: 156 KVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRD 215 Query: 202 PLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDA 260 P ++I + T + IEQ + K + LL + + ++F TK+ + A Sbjct: 216 PKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASA 275 Query: 261 LNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAW 320 L G A +L+GD+ Q R++ + +G ++VATDVAARGLD+ + V N ++ + Sbjct: 276 LEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPY 335 Query: 321 DPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS-----DMLQIKLNWQTPPANSSI 375 DPE +VHRIGRT RAG G A+ P E + +I + +++L ++ I Sbjct: 336 DPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARI 395 Query: 376 ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 L ++ L D A+ GD+L LT DIG Sbjct: 396 KKLTNSLSPLVAD----AESTHGDLLDRLTADIG 425 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/340 (39%), Positives = 205/340 (60%), Gaps = 7/340 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L ++ E G+ + +P+Q A+PA+L G+DV QA+TG+GKTAAF L ++ + + +A Sbjct: 34 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNN-HTIEA 92 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQHAPHIIVATPGR 132 LV+ PTRELA Q++ E+ +L + +TK T+C GGQ Q + ++ P +++ATPGR Sbjct: 93 LVITPTRELAMQISDEIFKLGK---HTKTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGR 149 Query: 133 LLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIA 192 LLDHL+ + +V+DE+D MLDMGF D I+++ + P+ Q LLFSAT PE I Sbjct: 150 LLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIK 209 Query: 193 AISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTK 251 ++ ++ +P+ I I ++ I Q+FY + + + LL P +VF TK Sbjct: 210 KLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAPEKSIVFTRTK 269 Query: 252 KDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLE 311 K+ + L + +LHGD++QRDR +++ F A VLVATDVA+RGLDI + Sbjct: 270 KEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVS 329 Query: 312 LVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 V N+ L + E ++HRIGRT RAG G+AI+ P E + Sbjct: 330 HVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 369 >UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium difficile RepID=Q185X0_CLOD6 Length = 497 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/485 (31%), Positives = 241/485 (49%), Gaps = 41/485 (8%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L L +L LGY + VQ +P +L G+++ V++KTGSGKTA+F + L + I+ Sbjct: 10 LNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDY 69 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 QAL++ PTRELA QV E+ + R L + + G Q Q L+ HI+VAT Sbjct: 70 NNIQALIVVPTRELALQVKDEISDIGR-LKKVRCSAIFGKQSIKDQIAELKQRVHIVVAT 128 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR+LDH+ +G++ L+ + LV+DEAD+M + GF + ++ ++ P + LFSAT E Sbjct: 129 PGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDE 188 Query: 190 AIAAISGRVQRDPLAIEI-----DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSC 244 I I + D I I D+ I+ + + + + K LL+ L+ P S Sbjct: 189 EIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKSV 248 Query: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304 ++FCNTK+ + + +++ G LH DL Q R + F N +LV++DVA+RG Sbjct: 249 IIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVASRG 308 Query: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 + I + LV+N+++ D E ++HRIGRT R GNSG AI+ ++ + I + K+ Sbjct: 309 IHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENIETYIGYKI 368 Query: 365 NWQTPPANSSIA-----------------------------------TLEAEMATLCIDG 389 N T S I +E+E+ L ++ Sbjct: 369 NELTDIEQSRITHGKVLFEEYSKGILKKVSKRKKVDKNSYKSKDIKLNIESEVVKLYLNA 428 Query: 390 GKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGK 449 GKK K+R D++GA + G+ DIG I V YV + K+ + IK K Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKYKEIPIKKK 488 Query: 450 TCRVR 454 +V+ Sbjct: 489 MVKVK 493 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/365 (38%), Positives = 217/365 (59%), Gaps = 9/365 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L L LN+LG+ P+Q A +P +L G+DV QA TGSGKTAAF L Sbjct: 1 MTKFQELG-LKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLS 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ+I Q L++ PTRELA Q+ E+++ ++ K+ T+ GGQ G+Q D+L+ Sbjct: 60 MLQEIQPK-NGIQGLIMAPTRELAMQITDEIKKFGKY-TGIKVATVYGGQGMGLQLDALE 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I+VATPGRL+DHL++G++ L + +V+DEAD MLDMGF D I ++ AP R Sbjct: 118 RGVEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVM 177 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P I +S +P +D+ D + I+Q + + K + L+ Sbjct: 178 SLFSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDK---FKYLIDFI 234 Query: 240 QPSS--CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 +P+ +VFC+TK + V L++ A+++ GD+ Q R+Q++ +F +G A +LVA Sbjct: 235 KPTKGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVA 294 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVA+RG+D+ +ELV+N+++ + HRIGRTARAG G A++F + N+I Sbjct: 295 TDVASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIK 354 Query: 358 DMLQI 362 +++ Sbjct: 355 RQIKV 359 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 208/347 (59%), Gaps = 7/347 (2%) Query: 23 YLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--ASLFQTQALVLCPT 80 Y+ +P+QAA +P L G+DV QA+TG+GKTAAFG+ ++++++ + QAL+L PT Sbjct: 24 YIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIERLEHGPNSRNPQALILTPT 83 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELA QV E+ +L ++ + GG+P Q + L+ APHI+V TPGR++D + + Sbjct: 84 RELAVQVRDEIAKLTHGQ-RINVVAVYGGKPLRSQMEKLKRAPHIVVGTPGRVIDLMTRR 142 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 + L+ L T+V+DEADRMLD+GF I+ ++R P RQTLL SAT P I ++ R R Sbjct: 143 ALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSATVPPTIEKLAQRYMR 202 Query: 201 DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 +P ++ T+ + IEQ+++ K +L LL QP +VFC TK+ + + Sbjct: 203 NPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKREQPQKAIVFCRTKRGTERITQ 262 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 L++ + +HGD++Q R++ L F RVLVATDV RG+DI + ++N+++ Sbjct: 263 RLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGIDISDVSHIINYDIP 322 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ---RANIISDMLQIK 363 + +VHR+GRT R G G+A +F PEE R + D L I+ Sbjct: 323 EFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEVRIDKLLIR 369 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 206/336 (61%), Gaps = 14/336 (4%) Query: 22 GYLTMTPVQAAALP-AILAGKDVRVQAKTGSGKTAAFGLGLLQQID--ASLFQTQALVLC 78 GY T +Q LP A+ KD+ QA+TG+GKTAAFG+ LL++ID A+ F +A+++ Sbjct: 37 GYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLERIDFKANKF-VKAIIVT 95 Query: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 138 PTRELA Q+ EL+ L + KI TL GGQ Q L+ I+V TPGR++DHL Sbjct: 96 PTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEKGVDIVVGTPGRIIDHLN 154 Query: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 198 + T+ L + LV+DEADRMLDMGF D + ++I+ +++T LFSAT P+ I I+ + Sbjct: 155 RDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFSATMPKEIVDIARKF 214 Query: 199 QRDPLAI-----EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 ++ + + E+ + +A EQ ++E K K+PLL R++ ++ +VFC TK + Sbjct: 215 MKEYIHVSTVKDELTTENA----EQLYFEVDEKDKLPLLCRIIDMNPDFYGIVFCQTKLE 270 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 + L ++G +A LHGD Q R++ L +F R+LV TDVAARG+DI L V Sbjct: 271 VDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVAARGIDIDGLTHV 330 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 +N+ + DPE +VHRIGRT RAG G AI+F ++ Sbjct: 331 INYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDD 366 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 153/362 (42%), Positives = 217/362 (59%), Gaps = 9/362 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L +LP L + ELG+ T TP+Q ALPA L G+DV A TG+GKTAAF L L Sbjct: 9 SFSDLGLLP-HLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67 Query: 63 QQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q+I + + + LVL PTRELA QV +R L++F + T+ GG P+ Q + Sbjct: 68 QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKF-GRIQTGTILGGMPYRQQLE 126 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ +IVATPGRL+DH+++G + L + LV+DEADRMLDMGF +A++ + PA Sbjct: 127 MLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAE 186 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSS-KGKIPLLQRL 235 RQTLLF+AT ++ + RDP+ I++ + +EQ++ + K LL+ L Sbjct: 187 RQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETL 246 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L + +VF TK D + D L+E G A+ LHGD++QRDR++ + +G V+ Sbjct: 247 LGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVI 306 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARG+DI L V+NF+L E +VHRIGRT RAG SG++ S E ++ Sbjct: 307 VATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRA 366 Query: 356 IS 357 I Sbjct: 367 IE 368 >UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root RepID=B6BS44_9RICK Length = 536 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 148/360 (41%), Positives = 214/360 (59%), Gaps = 11/360 (3%) Query: 16 TNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DASLFQTQ 73 +LN++ + TP+Q A+PA L GKD+ A+TG+GKT AF + L+ ++ D + F Sbjct: 15 NSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPLINKLILDKNAF--- 71 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133 ALV+CPTRELA QV ++ + N K L GG+ Q L + IIV TPGR+ Sbjct: 72 ALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLRQLGNRSRIIVGTPGRI 131 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 DHL++ +++L A LV+DE DRMLDMGF+ I+ V++F P QTLLFSAT P+ I Sbjct: 132 NDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKDHQTLLFSATLPQNILR 191 Query: 194 ISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKI-PLLQRLLSLHQPSSCVVFCNTK 251 IS R P I +T + I+Q+ + + K L+ + L+ + S +VF TK Sbjct: 192 ISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDELIDQFLA--RKGSILVFVKTK 249 Query: 252 KDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLE 311 + + L E G SA +HGDL Q RD+ + F G R+L+ATDVAARGLDI ++ Sbjct: 250 RSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRILIATDVAARGLDIPLIQ 309 Query: 312 LVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPA 371 V+N++L PE +VHRIGRTARAG+ G A++F P++ N I+ + I N++ P+ Sbjct: 310 HVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWNSINKL--IDPNFKAVPS 367 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 148/357 (41%), Positives = 212/357 (59%), Gaps = 10/357 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F + P + L E GY+T TP+QA A+P + G+D+ A+TG+GKTAAF L Sbjct: 1 MTQFVDFGLAAPI-MKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALP 59 Query: 61 LLQQIDASLFQTQA-------LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFG 113 +L ++ + +A LVL PTRELA Q+A R +FLP + + GG G Sbjct: 60 ILHRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVF-GGVTIG 118 Query: 114 MQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF 173 Q +L + ++VATPGRLLD + + ++SLD++ LV+DEAD+MLD+GF A+ ++ Sbjct: 119 RQERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTL 178 Query: 174 APASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLL 232 P +RQ+L FSAT P+ IA ++ + RDP+ + + +EQ+ S+ K LL Sbjct: 179 LPKARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALL 238 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 +L +VF TK V L +VG + ++HG+ Q R++ L F G+ Sbjct: 239 GTILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 RVLVATD+AARG+D++ + VVNF+L PE +VHRIGRTARAG GLAISFC EE Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEE 355 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 212/352 (60%), Gaps = 3/352 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGLGL 61 F N L L +G+ T +Q +P +L+ +DV A+TG+GKTAAFGL + Sbjct: 4 TFKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLPI 63 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +Q+++ L QA +LCPTREL Q+ + R ++FL KI++L GG Q SLQ+ Sbjct: 64 IQKVNFDLSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKSLQN 123 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HII+ TPGR++D +++ + L+ + L++DEAD ML+MGF + +D +++ P +RQ+L Sbjct: 124 KTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQSL 183 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSS-KGKIPLLQRLLSLH 239 LFSAT + + AI+ DP+ I + + ++ +Y K L+R++ ++ Sbjct: 184 LFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIVDIN 243 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TKK+ + + + L + G +A +L+GDL Q R+ + RF N + + LVATD Sbjct: 244 PGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVATD 303 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 VAARGLD+ ++ V+N+ L + ++++HR GRT RAGNSG+++ +E + Sbjct: 304 VAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETR 355 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 220/376 (58%), Gaps = 6/376 (1%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L+ L+ +G+++ TP+QAAA+P +L G+D +A+TG+GKTAAF L LL +I+ + + QA Sbjct: 46 LSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHKPQA 105 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 +++ PTRELA QVA E++ L R + K+L + GG Q +L HI+V TPGR+ Sbjct: 106 IIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGAHIVVGTPGRVK 165 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 D L + + LD +T V+DEAD ML MGF D + ++ AP S Q +LFSAT P + I Sbjct: 166 DLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMVKTI 225 Query: 195 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 R R+P +++ T+ + + Q ++ K + RLL + + +VF T++D Sbjct: 226 VDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVRTRQD 285 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 + + D L+ G A +LHGD+ Q R++T+ G +LVATDV ARGLD+ + V Sbjct: 286 TERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHV 345 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII-----SDMLQIKLNWQT 368 N+++ +D E ++HRIGRT RAG G AI + + I S M +I+L + Sbjct: 346 FNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQLPQRD 405 Query: 369 PPANSSIATLEAEMAT 384 A + +A L AE+ T Sbjct: 406 EVAAARVAKLGAELET 421 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 201/338 (59%), Gaps = 1/338 (0%) Query: 13 AQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQT 72 A L L + GY +P+Q AA P ++ G+D+ QA+TG+GKTAAF L LL+++++ Sbjct: 81 ALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLESGQKTP 140 Query: 73 QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGR 132 Q LVL PTRELA QVA + A P+ K+L + GG F Q +L+ ++V TPGR Sbjct: 141 QVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDVVVGTPGR 200 Query: 133 LLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIA 192 ++DH+++GT+ L +LV+DEAD ML MGF D ++ ++ P RQ +LFSAT P I Sbjct: 201 VMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPPEIR 260 Query: 193 AISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTK 251 +S R DP + I + D I Q+ K+ LQR+L ++F TK Sbjct: 261 RLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIFARTK 320 Query: 252 KDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLE 311 V + L G L+GD+ Q R++T+ R +GS VLVATDVAARGLD++ + Sbjct: 321 VITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDVAARGLDVERIG 380 Query: 312 LVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 LV+N+++ +D E +VHRIGRT RAG +G A+ F P E Sbjct: 381 LVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRE 418 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 149/383 (38%), Positives = 232/383 (60%), Gaps = 9/383 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F +L V P + L +LG T TP+Q ++P +L G+D+ A+TG+GKTAAFGL Sbjct: 22 LTNFESLGVSKPI-IATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLP 80 Query: 61 LLQQIDASLFQ-----TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 L++++ A + T+ L+L PTREL +Q+A L++ R + +I + GG Q Sbjct: 81 LIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIR-KSSLRINVVVGGVSINKQ 139 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 + L+ I+VATPGRLLD + + ++L A+ LV+DEAD+MLD+GF + + + P Sbjct: 140 QLQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVP 199 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKG-KIPLLQ 233 RQT+LFSAT P+AIA ++G DP+ +E+ A +EQ + + K K LL+ Sbjct: 200 KKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 259 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 + L+ + +VF TK + + L +G S S+HG+ Q R++ L F +GS + Sbjct: 260 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 L+ATDVAARG+DI ++ V N++L P+ +VHRIGRTARAG G+AI+FCAP+EA+ Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 379 Query: 354 NIISDMLQIKLNWQTPPANSSIA 376 I ++ I + + A ++I+ Sbjct: 380 RDIERLMGIDITVASGEAPANIS 402 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 212/370 (57%), Gaps = 8/370 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+FS L + P + L E ++T TP+QA A+P ILAG+D+ A+TG+GKTAAF L Sbjct: 36 LTSFSNLGLAEPI-VRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALP 94 Query: 61 LLQQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L ++ + + ALVL PTREL+ Q+ + R N + GG P G Q Sbjct: 95 ILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHA-NISVSLAIGGVPMGRQ 153 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +L ++VATPGRL+D ++ V LD + LV+DEAD+MLDMGF AI ++R P Sbjct: 154 IRALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLP 213 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQR 234 R +L FSAT P AIA ++G + RDP+ + + +EQ+ K LL Sbjct: 214 HKRHSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAE 273 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +LS +VF TK V L + G +A ++HG+ Q RD+ L F G R Sbjct: 274 VLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRT 333 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 L+ATD+AARG+D+ + V+NF+L PE +VHRIGRTARAG G+AISFC EE Sbjct: 334 LIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLR 393 Query: 355 IISDMLQIKL 364 I +++++L Sbjct: 394 SIEKLIKMQL 403 >UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NSW7_9BACE Length = 400 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 147/333 (44%), Positives = 202/333 (60%), Gaps = 8/333 (2%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 +++ GY+ TPVQA A+P + KDV +A TG+GKT AFG+ +++ ID QALVL Sbjct: 27 IDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMVEHIDPESDAVQALVL 86 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA Q+ ELR L F + + L GG P Q +L+ P I+VATPGRL+DH+ Sbjct: 87 APTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKKHPQIVVATPGRLMDHM 146 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP--ASRQTL-LFSATWPEAIAAI 194 ++ TV LD + T+V+DEADRMLDMGF I DV R SR+ L LFSAT + I Sbjct: 147 KRRTVKLDKVETVVLDEADRMLDMGF---IHDVTRILDQIKSRKNLGLFSATISREVMDI 203 Query: 195 SGRVQRDPLAIEID-STDALPPIEQQFYETSSKG-KIPLLQRLLSLHQPSSCVVFCNTKK 252 S QRDP+ I + + P I+Q + +G K+ + LL+ + FCNTK Sbjct: 204 SWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGYERAIAFCNTKN 263 Query: 253 DCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLEL 312 + L G +A ++HGD++QR R++TL F G RVLVATDVAARGLDI +++ Sbjct: 264 MTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVAARGLDIDDVDV 323 Query: 313 VVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 V N+++ + E ++HRIGRT RA G+A S Sbjct: 324 VFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLV 356 >UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH79_RHOM4 Length = 505 Score = 257 bits (657), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 215/392 (54%), Gaps = 14/392 (3%) Query: 10 LPPAQLTNLNE--------LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 LP L L E +G+ + PVQ LP +L G+DV VQ++TGSGKT AF L L Sbjct: 37 LPEVSLAELPERMQQAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPL 96 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILT---LCGGQPFGMQRDS 118 +++D S Q QAL+L PTRELA Q++ ++ + + L + GG +G Q + Sbjct: 97 FERLDPSRGQVQALILTPTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKA 156 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ +++ TPGR+LD +++G + L AL LV DEAD ML MGF A+ + R+ P R Sbjct: 157 LEQGAQVVIGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRER 216 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLL 236 T +FSAT P + A++ +DP + + STD A IE +++ K L +L+ Sbjct: 217 NTAMFSATMPPRVQALAREFLKDPAFVSL-STDRIAAETIEHRYFIVPPMEKDRALVQLI 275 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 L P S ++F NTK+D + + L G +A ++ GDL Q+ R++ + R G R+LV Sbjct: 276 ELENPESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLV 335 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARG+DI L V +++ DPE +VHR GRT R G G I P E R I Sbjct: 336 ATDVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAI 395 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCID 388 + I L T P ++A AE A ++ Sbjct: 396 ARQYDIPLEKGTLPTPETVAERVAERAVALLE 427 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 153/351 (43%), Positives = 209/351 (59%), Gaps = 11/351 (3%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS- 68 L PA L + E GY T TP+QA A+PA+LAG D+ A+TG+GKTAAF L +LQ++ Sbjct: 8 LAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQRLSTEP 67 Query: 69 -------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + +AL++ PTRELA QV +R ++L T ++ + GG G Q D L+ Sbjct: 68 RLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMV-MFGGVGMGAQIDKLRR 126 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+VATPGRLLDH +GT+ L + LV+DEADRMLDMGF I V+ P +Q+L Sbjct: 127 GVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVPKHKQSL 186 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT+ + I ++ + RDPL I++ + + I Q + K LL +++ H Sbjct: 187 LFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTHIINEHN 246 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VF TK V + L + G A++LHG+ Q R Q L F +G+ R LVATD+ Sbjct: 247 WSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRALVATDI 306 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISF-CAPEEA 350 AARG+DI L VVN+E+ E +VHRIGRT RAGNSG A+S C EE Sbjct: 307 AARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEG 357 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 145/355 (40%), Positives = 207/355 (58%), Gaps = 8/355 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ--T 72 + L+ L +T TPVQ ++P +L GK++ A+TG+GKTAAFGL ++Q + Sbjct: 15 IETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQTVQQKKLNGTP 74 Query: 73 QALVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQHAPHIIVATP 130 QALVL PTRELA QV L ++ T++ +C GG G+Q+ L+ I++ATP Sbjct: 75 QALVLVPTRELAQQV---FDNLNQYSAQTELRIVCVYGGTSIGVQKRKLEEGADILIATP 131 Query: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 GRLLDHL G V++ + LV+DEADRMLDMGF + + R PA +Q LLFSAT+ + Sbjct: 132 GRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFSATFEKR 191 Query: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 I I+ ++ P+ +E+ + ++Q Y K K LL L+ +VF Sbjct: 192 IKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTK 251 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 TK+ + L G A+S++GD Q R + L F G R L+ATDVAARGLDI+ Sbjct: 252 TKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAARGLDIQE 311 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 LE VVNF++ + E +VHRIGRT RAG SGLA+S + +E + I ++L +L Sbjct: 312 LEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIENLLDQRL 366 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 213/374 (56%), Gaps = 8/374 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F L L A + L + G+ TP+Q +P +L+G KD+ QA+TG+GKTAAFGL Sbjct: 1 MEKFRNLG-LSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL--TLCGGQPFGMQRD 117 +++ + QA+VL PTRELA QVA E+ F + K+ T+ GGQP Q Sbjct: 60 PIIENVREGAGHVQAIVLTPTRELAMQVADEI---ISFRGSRKVFVATVYGGQPMLPQLK 116 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 +L+ I+V TPGR+LDH+++ T+ L +N V+DEAD M +MGF + + +++ A Sbjct: 117 ALKRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGED 176 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLL 236 R+TLLFSAT P + I+ + D + + D P E F+E + + + L R++ Sbjct: 177 RRTLLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVV 236 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VFC T+ D V L E G A +HGDL Q R+ L+RF ++LV Sbjct: 237 DAQPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILV 296 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARG+D+ L VVNF L DP+ VHR+GRT RAG G+A++ P E + I Sbjct: 297 ATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYI 356 Query: 357 SDMLQIKLNWQTPP 370 + + +++++ + P Sbjct: 357 TKITKLRVDKKPLP 370 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 257 bits (656), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 137/347 (39%), Positives = 210/347 (60%), Gaps = 4/347 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L + P L + ++GY + T +QAA +PA++AG DV A+TG+GKTAAF + +L Sbjct: 15 FADLQIHPRV-LRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +ID + QALVL PTRELA QVA R +L +L + GG + +Q L+ Sbjct: 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGR++DHL++ T+ L ++ LV+DEAD ML MGF+D ++ ++ P +Q LF Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P AI +S + DP + + A+ I Q + + + K+ L R+L + Sbjct: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDALTRVLEVEPFE 251 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF TK+ + + + L G SA ++ GD+ Q R++T+ +G +LVATDVAA Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 RGLD++ + V+N+++ D E +VHRIGRT RAG SG A+ F +P E Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 257 bits (656), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 149/374 (39%), Positives = 222/374 (59%), Gaps = 7/374 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 ++F+ L + P Q T L LGY TP+Q+ A+P +L G D+ +A+TG+GKTA+F L + Sbjct: 4 SSFAELALCPELQFT-LKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPI 62 Query: 62 LQQIDASLFQ----TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 ++++ + +ALVL PTRELA QVA R L +++++ GG P Q Sbjct: 63 IEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIK 121 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ I+VATPGRLLD L++ +SL+ L LV+DEADRMLD+GF D I ++ +A Sbjct: 122 RLKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADD 181 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQF-YETSSKGKIPLLQRLL 236 RQTLLF+AT E++ ++ +P I++ ++ +QF Y+ K +L L+ Sbjct: 182 RQTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLI 241 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + +VF TKK + L + G +A ++HG+ QR+R + L F G VLV Sbjct: 242 TEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLV 301 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARGLDI+SL VVN++L PE +VHRIGRT RAG +G A+S AP E + I Sbjct: 302 ATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRI 361 Query: 357 SDMLQIKLNWQTPP 370 +++ K+ + P Sbjct: 362 EKLIKQKIKLRPVP 375 >UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 Tax=Spiroplasma citri RepID=Q14NT1_SPICI Length = 443 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 133/344 (38%), Positives = 205/344 (59%), Gaps = 3/344 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+TLN+ P Q + ++GY +T +Q A+P L +D+ ++ TG+GKT AF + +LQ Sbjct: 3 FNTLNLYPALQRM-IAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQ 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++ L Q QA++LCPT ELA Q+ ++R+ A +L +CGG Q +L+ + Sbjct: 62 NLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS- 120 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +IIV TPGR+ DH+ + T+ LD + T+V+DEAD ML MGF +D V + AP QTLLF Sbjct: 121 NIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLF 180 Query: 184 SATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ + I+ Q +P+ I + + I Q + S K +L L QP Sbjct: 181 SATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHLQPK 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++F NTK + + L G ++GD + +R Q + F +G RV+VATDVAA Sbjct: 241 RSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVAA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 RG+DI +++ V+N+++ + E ++HRIGRTARAG +G+AIS + Sbjct: 301 RGIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIVS 344 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/358 (39%), Positives = 209/358 (58%), Gaps = 9/358 (2%) Query: 14 QLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ 73 ++ +L +LG+ T +QA A+P +L+G+DV Q++TG+GKTAAF L +L+++D Q Sbjct: 14 RVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQ 73 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQHAPHIIVATPG 131 A+VL PTRELA QV + A+F+ N+ + TL GGQ Q L+ HI+V TPG Sbjct: 74 AIVLTPTRELAIQVHDAM---AQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGTPG 130 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 R++D L++G + LD + V+DEAD ML MGF D ++ ++ AP RQT LFSAT P +I Sbjct: 131 RVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSATMPPSI 190 Query: 192 AAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSK-GKIPLLQRLLSLHQPSSCVVFCN 249 + + R P+ + ++ A P I Q Y K LQ +L + P + ++F Sbjct: 191 RMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMEDPETALIFVR 250 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 T++ + L G S HGDL Q+ R++ L RF + R +VATD+AARGLD+ Sbjct: 251 TRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDVDQ 310 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQ 367 L V+N++L E +VHRIGRT RAG G AI+ P E ++ I ++ NWQ Sbjct: 311 LSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFER--HVRQNWQ 366 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 213/377 (56%), Gaps = 3/377 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F+ N L P L + ELG+ + T +Q +P I +D+ A+TG+GKTAAF L Sbjct: 1 MNLFTETN-LSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ID + Q LVLCPTREL Q+ +++ ++++ N K + GG Q SL Sbjct: 60 PILDMIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + P IIV TPGR++D + + + + LV+DEAD ML MGF D ++ ++R P ++ Sbjct: 120 RDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKH 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT + + IS P I + S + + I+ +FY + K L+RL+ Sbjct: 180 TYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLIDA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + Q V D L + G +A +LHGDL Q RD + +F + +LVAT Sbjct: 240 NPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ SL V+++ L DPEV VHR GRT RAG G+++S PEE+++ I Sbjct: 300 DVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKM 359 Query: 359 MLQIKLNWQTPPANSSI 375 +I + + P +I Sbjct: 360 STKIDIVEKKVPTGDAI 376 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 161/417 (38%), Positives = 224/417 (53%), Gaps = 11/417 (2%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 P L + E GY MTPVQ A+PAI G+DV A+TG+GKTAAF L +LQ++ Sbjct: 8 FAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQKMHERP 67 Query: 70 FQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 Q AL+L PTRELA QVA + ++ + N +LT+ GG Q L+ Sbjct: 68 MTVQHSNARALILTPTRELAAQVADNISAYSKHM-NISVLTIYGGMKMATQAQKLKQGAD 126 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 IIVATPGRLL+H+ +SL + LV+DEADRMLDMGFS I +++ RQ LLFS Sbjct: 127 IIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNLLFS 186 Query: 185 ATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 AT+ A+ ++ + P I D + + Q Y + K LL L+ Sbjct: 187 ATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIGTKNWQQ 246 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 +VF T+ D + LN G + +HG+ Q R + L F G RVLVAT+VAAR Sbjct: 247 VLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVATEVAAR 306 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 GLDI+ LE VVN++L + E +VHRIGRT RAG +G+AISF + EE + I ++ K Sbjct: 307 GLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEKLIGQK 366 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA-LTGDIGLDG--ADIGK 417 + T P +++ E + T+ K D +GA + G+ + G +GK Sbjct: 367 IRRITVPG-YEVSSRELLLKTIEKRRSFGKKQERNDNVGAQVVGEKNMQGRRVKVGK 422 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 150/372 (40%), Positives = 221/372 (59%), Gaps = 11/372 (2%) Query: 1 MTAFSTLNVLPPAQLTN-LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 +T F L V P ++ + L G +T P+Q ALP L G+D+ QA+TG+GKT AFG+ Sbjct: 38 LTTFRDLGVTP--EIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGV 95 Query: 60 GLLQQIDA---SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 +LQ++ + + + LV+ PTRELA QV +L A L ++ILT+ GG+ + Q Sbjct: 96 AMLQRVGKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKL-GSRILTVYGGRAYEPQV 154 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 ++L+ +IV TPGRLLD +++ + L ++ LV+DEADRMLD+GF I+ +I+ P Sbjct: 155 EALKQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPE 214 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA----LPPIEQQFYETSSKGKIPLL 232 RQT+LFSAT P I A+S R P + ++ DA P Q + KI ++ Sbjct: 215 KRQTMLFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIV 274 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 RLL ++FC TK+ C V + L E G +A ++HGDL Q R+Q L F NG Sbjct: 275 GRLLQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKI 334 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 VLVATDVAARG+D+ + VVN++ D + +VHRIGRT RAG +G+A++F E+ R Sbjct: 335 DVLVATDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTR 394 Query: 353 ANIISDMLQIKL 364 +I++ L + Sbjct: 395 WKVINNALSLDF 406 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/356 (41%), Positives = 209/356 (58%), Gaps = 13/356 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT FS L L P L + + GY T TP+QAAA+P LAG+DV A+TG+GKTAAF L Sbjct: 1 MTEFSELG-LSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLP 59 Query: 61 LLQQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKI--LTLCGGQPFGMQ 115 L+ ++ A +ALV+ PTRELADQVA + A+ TK+ L GG FG Q Sbjct: 60 LIDKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAK---GTKLSWALLIGGVSFGDQ 116 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L +++ATPGRLLDH ++G + + + LV+DEADRMLDMGF I+ + + P Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTP 176 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEID----STDALPPIEQQFYETSSKGKIPL 231 +QTL FSAT P I ++ + +DP+ IE + + + + + + K K Sbjct: 177 PKKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLA 236 Query: 232 LQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGS 291 L+ L+ Q + +VFCN K + V +L G A ++HGDL+Q R +TL F +GS Sbjct: 237 LRALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGS 296 Query: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP 347 ++LVA+DVAARGLDI ++ V N+++ + +VHRIGRT RAG SG+ P Sbjct: 297 LKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTP 352 >UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gammaproteobacteria RepID=Q21EB3_SACD2 Length = 436 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 146/353 (41%), Positives = 211/353 (59%), Gaps = 8/353 (2%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---DASLFQTQA 74 L++L + T VQ +PA+LAGKD+ V AKTGSGKTAAF L +L + T+A Sbjct: 16 LDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPMLHKFLNDPRPNTSTRA 75 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 L+L PTRELA Q + A + K+ + GG+ + Q +++ P ++VATPGRL+ Sbjct: 76 LILLPTRELALQTVKAFEQFAGY-TQIKVGLIMGGEAYKHQVATVRKNPEVLVATPGRLV 134 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWP-EAIAA 193 +H++ G V L LV+DE+DRMLDMGF + + + RQ LLFSAT + I Sbjct: 135 EHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEERQNLLFSATLKHKGIGG 194 Query: 194 ISGRVQRDPLAIEIDS-TDALPPIEQQ-FYETSSKGKIPLLQRLLSLHQPSSCVVFCNTK 251 I+G +Q DP+ I++DS + I QQ + K L+ +L++ +VFCNT+ Sbjct: 195 ITGLLQ-DPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVVKLIAEEDAQRVIVFCNTR 253 Query: 252 KDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLE 311 CQ V + L + +HG++ Q DR Q + RF +G RVLVATDVAARGLDIK ++ Sbjct: 254 LQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVLVATDVAARGLDIKDVD 313 Query: 312 LVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 LV+NF A+ + HVHR+GRT R+ +GLAI+ +P+E + I L+I+L Sbjct: 314 LVINFSAAFTGDEHVHRVGRTGRSDKTGLAITLISPKEFNPMSSIERYLKIRL 366 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/342 (40%), Positives = 202/342 (59%), Gaps = 7/342 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ------IDAS 68 L L E+GY +P+Q +P +L G DV A+TG+GKTAAF L L + I+ Sbjct: 73 LAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMAELADINGV 132 Query: 69 LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVA 128 TQ LVL PTRELA QVA A + + +L + GG P+G Q L+ ++V Sbjct: 133 SRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVVG 192 Query: 129 TPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWP 188 TPGR++DHL+KG++ L L LV+DEAD ML MGF++ ++ ++ P S+Q LFSAT P Sbjct: 193 TPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALFSATMP 252 Query: 189 EAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247 +I I+ + DP + + + T I Q++ + K+ + R+L + +VF Sbjct: 253 NSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVENYDGIIVF 312 Query: 248 CNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI 307 TKK+ + V D L G +A +++GD+ Q+ R++T+ +G +LVATDVAARGLD+ Sbjct: 313 VRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDV 372 Query: 308 KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 + + LVVN+++ D E +VHRIGRT RAG G AI F P E Sbjct: 373 ERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPRE 414 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 151/389 (38%), Positives = 225/389 (57%), Gaps = 15/389 (3%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F L + P L L L Y T TP+QAA +P +L KD+ A+TG+GKTAAF L L Sbjct: 4 TTFRELGLSAPI-LRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPL 62 Query: 62 LQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 +QQ+ + +AL+L PTRELA Q+ +R AR L + + GG + Q Sbjct: 63 IQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGL-HLSTAVIFGGVGYASQF 121 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L I+VATPGRL+DHL++ TVSLD + TL++DEAD MLDMGF+ A+ ++ P Sbjct: 122 KELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPR 181 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFY---ETSSKGKIPLLQ 233 R T +FSAT P+ I ++ + + P + + + +QF + S+ ++ L+ Sbjct: 182 KRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLE 241 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L P ++F T+ + L+ A ++HGD Q R++ L F +G Sbjct: 242 LLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTP 301 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATD+AARG+D+K + LV+N++L +PEV+VHRIGRTARAG +G AI+ C+PEE ++A Sbjct: 302 VLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKA 361 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEM 382 + +L L P ++S A++ AE+ Sbjct: 362 RNVHKLLGRLL-----PVHASSASVPAEL 385 >UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiothermus RepID=C1XGK2_MEIRU Length = 556 Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/357 (39%), Positives = 209/357 (58%), Gaps = 7/357 (1%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ---TQALVLC 78 G+ T TP+QAAA+P L GKDV QA+TG+GKT AFG+ + ++DA+ + +AL+L Sbjct: 20 GFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRLDAARERGRAPRALILT 79 Query: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 138 PTRELA QVA EL LA P+ I + GG +G Q ++L+ ++VATPGR +D+L+ Sbjct: 80 PTRELALQVAKELEWLA---PHLTITPIYGGTGYGKQAEALKRGTDVVVATPGRAIDYLE 136 Query: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 198 + + L + V+DEAD ML MGF +A++ ++ P +RQTLLFSAT P +S R Sbjct: 137 QRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQTLLFSATLPTWARRLSERY 196 Query: 199 QRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVC 258 Q+ + I + +A+ E+ + ++ +L LL + P +VF +TK +C + Sbjct: 197 QKAAIHINVIKDEAIS-YEEVAIQAPIHNRLSVLSDLLFAYAPERTIVFTSTKAECNDLA 255 Query: 259 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 318 L SA +HGD+ Q DR++ + RF +G+ VLVATDVAARGLDI ++LVV++ L Sbjct: 256 LGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAARGLDIPEVDLVVHYRL 315 Query: 319 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSI 375 E ++HR GRT RAG SG + P E + + L+ PP + Sbjct: 316 PDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETLERELKRNFKRVNPPTPEEV 372 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 137/357 (38%), Positives = 211/357 (59%), Gaps = 7/357 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRV-QAKTGSGKTAAFGL 59 MT F + L L+ ++ GY TP+Q +P +L+GK+ + QA+TG+GKTAAFG+ Sbjct: 1 MTKFQQMG-LSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L++++D QALVL PTRELA QV E+ L + +L + GG G Q +L Sbjct: 60 PLIERLDEKANDVQALVLTPTRELALQVCNEIDSL-KGNKRLNLLPVYGGVSIGNQIRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGR++DHL +GT+ + + LV+DEAD MLDMGF + ++ ++ +Q Sbjct: 119 KRRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQ 178 Query: 180 TLLFSATWPEAIAAIS----GRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRL 235 L+FSAT P+ I ++ G + E + +Q +Y S KI LL RL Sbjct: 179 ILMFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRL 238 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + + +VF TK + + + L + G A +L+GD+ Q R++ + RF + ++L Sbjct: 239 IDIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKIL 298 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 ++TDVAARG+DI +L+ V+N+ L +PE ++HRIGRTARAGN G AI+F P E +R Sbjct: 299 ISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRR 355 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 137/344 (39%), Positives = 208/344 (60%), Gaps = 5/344 (1%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L + L + ++G+ + +QA ++P L G D+ QA+TG+GKTAAFG ++ D S Sbjct: 11 LKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINNADFSG 70 Query: 70 FQT--QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIV 127 + +AL+L PTRELA QV EL RL + +L + GGQP Q +L++ I+V Sbjct: 71 KKKSPKALILAPTRELAIQVNEELVRLGKH-EKLSVLPIYGGQPIDRQIRALKNGVDIVV 129 Query: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187 TPGR+LD +++ ++ L+ + LV+DEAD ML+MGF D ++++++ RQTLLFSAT Sbjct: 130 GTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATM 189 Query: 188 PEAIAAIS-GRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCV 245 P I ++ ++ D I I S+ + IEQ ++E + + L R+L +P++ + Sbjct: 190 PPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAAI 249 Query: 246 VFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305 +FC TKK V + + G +HGD+ Q R QTL +F GS LVATDVAARG+ Sbjct: 250 IFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARGI 309 Query: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 D++S+ V+N++L D E +VHRIGRT RA G+A S P+E Sbjct: 310 DVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKE 353 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/324 (42%), Positives = 198/324 (61%), Gaps = 1/324 (0%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTR 81 GY TP+QA +P +L G+DV Q++TG+GKTAAF L +L ++D + Q LVL PTR Sbjct: 323 GYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSRVDVRSRRPQVLVLAPTR 382 Query: 82 ELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGT 141 ELA QVA + L ++ + GGQ + Q L+ ++V TPGR++DH+++GT Sbjct: 383 ELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQVVVGTPGRVIDHVKRGT 442 Query: 142 VSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRD 201 + L +L+ LV+DEAD ML+MGF + + V+ +P RQ LFSAT P+ I I+ D Sbjct: 443 LDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKIADEYLND 502 Query: 202 PLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDA 260 P I I S T + Q+ S + KI L R+L + + +VF TK +V + Sbjct: 503 PARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDGVIVFTKTKDSTLSVAEK 562 Query: 261 LNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAW 320 L++ G SA++L+GD+ Q+ R++T+ + G VLVATDVAARGLD+ + V NF+L Sbjct: 563 LSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPH 622 Query: 321 DPEVHVHRIGRTARAGNSGLAISF 344 D E +VHRIGRT RAG SG AI F Sbjct: 623 DSESYVHRIGRTGRAGRSGQAIIF 646 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 212/377 (56%), Gaps = 5/377 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L + + L +G+ TP+Q ++P L G D+ QA+TG+GKT AFG+ Sbjct: 1 MQNFKELGI-SDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ Q+L+L PTRELA QVA +LR ++ +++T+ GG P Q +L+ Sbjct: 60 LIEKV-VGQQGVQSLILAPTRELAMQVAEQLREFSKG-QKVQVVTVFGGMPIERQIKALK 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS-RQ 179 P I+V TPGR++DHL + T+ ++TL++DEAD M++MGF D + ++ PA RQ Sbjct: 118 RGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQ 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT P+AI + + + P I+ +++ + P I++ + K L + Sbjct: 178 TMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 HQP +VF TK+ + AL G A LHGD+ Q R + L +F N +LVAT Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V NF++ D E + HRIGRT RAG G+A++F P E I D Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 357 Query: 359 MLQIKLNWQTPPANSSI 375 + ++ PP + Sbjct: 358 VNNRRMKALRPPHRKEV 374 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 208/361 (57%), Gaps = 5/361 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F++++ L + L + GY TP+QA +P L G DV QA+TG+GKTA+F + +L+ Sbjct: 14 FASMD-LSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILE 72 Query: 64 --QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 I+ QAL+L PTRELA QV E+ +L+ L + GG+P Q D L+ Sbjct: 73 LLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGL-KINCAAVYGGKPIKSQVDKLKK 131 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H++V TPGR+LDH+ +GT+ + +V+DEADRMLD+GF I+ +++ P RQTL Sbjct: 132 GCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTL 191 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 L SAT P IA ++ R +P + D ++ IEQ+++ K LL +LL + Sbjct: 192 LLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLREE 251 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P +VFC TK+ V L + + ++HGDL Q RD+ + F +GS R LVATDV Sbjct: 252 PKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATDV 311 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 RG+D+ ++ +VNF++ + +VHR+GRT R G G+A +F P+E I + + Sbjct: 312 IGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEERI 371 Query: 361 Q 361 Sbjct: 372 N 372 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 217/380 (57%), Gaps = 4/380 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILA-GKDVRVQAKTGSGKTAAFGL 59 M F+ L L P L G+ +P+Q A+P +L+ D+ QA+TG+GKTAAFGL Sbjct: 1 MDKFTALG-LEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++Q+I+ L + QAL+LCPTRELA QV E++ + T + TL GG P Q+ +L Sbjct: 60 PIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTV-TLYGGAPIMDQKRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGR + ++ G + LD+L LV+DEAD ML+MGF + ++ V++ +P R Sbjct: 119 KKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRT 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSL 238 L+FSAT P + I+ + + I+ S T + I+Q YE + K L R++ L Sbjct: 179 VLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDL 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC TK + + V L G +A +HGD+ Q R++ L RF N + +L+AT Sbjct: 239 EKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L +VNF L E +VHRIGRT RAG +G AI+ P+E + + I Sbjct: 299 DVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIEK 358 Query: 359 MLQIKLNWQTPPANSSIATL 378 K + P + L Sbjct: 359 KTGAKTERRKLPFGEEMIKL 378 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 146/363 (40%), Positives = 209/363 (57%), Gaps = 10/363 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--------D 66 L + E GY T TP+QA A+P +L+G+DV A+TG+GKTA+F L ++Q++ Sbjct: 113 LRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSAS 172 Query: 67 ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126 + +AL+L PTRELADQVA + A+ P + + GG Q L+ I+ Sbjct: 173 PARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEIL 231 Query: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 +ATPGRLLDH+Q+ T +L + LV+DEADRMLDMGF + ++ P RQTLLFSAT Sbjct: 232 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 291 Query: 187 WPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCV 245 + I ++ R+P IE+ S A + Q Y+ + K + +L+ + Sbjct: 292 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 351 Query: 246 VFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305 VFCN+K + + G A ++HGD Q +R Q L F G LVATDVAARGL Sbjct: 352 VFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 411 Query: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLN 365 DI L V+NF+L ++ E +VHRIGRT RAG SG A+S C+P E ++ I +++ L+ Sbjct: 412 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRTLS 471 Query: 366 WQT 368 +T Sbjct: 472 LET 474 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 143/356 (40%), Positives = 209/356 (58%), Gaps = 12/356 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGLGLL 62 F + + P + + ++G+ T TP+Q ALP +LAG D A TG+GKTAAFG+ L+ Sbjct: 46 FESFGLSAPV-MAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLI 104 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + ID+++ TQALVL PTRELA QVA +L L + +++T+ GG + Q D ++ Sbjct: 105 ENIDSTVKDTQALVLSPTRELALQVAEQLTLLGK-KKGVRVVTIYGGASYRTQIDGIKRG 163 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------- 175 HI+VATPGRL+D L++ + L ++ T+V+DEAD ML MGF +A++ ++ Sbjct: 164 AHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSV 223 Query: 176 -ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQ 233 A+ +T LFSAT + ++ +P + ++ IEQ +Y + K ++ Sbjct: 224 RAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIG 283 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 RLL ++FC TK + + D L + G A SLHGD Q++R+ TL +F + Sbjct: 284 RLLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVK 343 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 V+VATDVAARGLDIK L VVN L WD E +VHRIGRT R G G AI+ PE+ Sbjct: 344 VIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQ 399 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 253 bits (647), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 220/368 (59%), Gaps = 1/368 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P L + GY T +P+QA A+PA+L G ++ A+TG+GKTAAF L LL +I+ + Sbjct: 131 LSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSRINFNG 190 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 +T LVL PTRELA QV+ +++ A + N ++ + GGQ +Q +L+ I+VAT Sbjct: 191 RETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRKASIVVAT 250 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGRL+DH+++G++SL A+ +V+DEAD MLDMGF + ++ +++ PA Q LFSAT P+ Sbjct: 251 PGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFSATMPD 310 Query: 190 AIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 ++ I + + I+ T + I Q++ ++ KI L R+L + ++F Sbjct: 311 SVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDGVLIFV 370 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 TK++ V + L G + L+GDL Q R++T+ R G ++VATDVAARG+D+ Sbjct: 371 RTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAARGIDVD 430 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQT 368 + LVVN+++ +D E +VHRIGRT RAG SG AI F P E + I + ++ Sbjct: 431 RISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEKATRQPIDVME 490 Query: 369 PPANSSIA 376 P + I+ Sbjct: 491 MPTSEQIS 498 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 253 bits (646), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 147/359 (40%), Positives = 206/359 (57%), Gaps = 4/359 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 MT F L L L L G+ TP+Q +P +L G D+ QA+TG+GKTAAFGL Sbjct: 1 MTDFKELG-LSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ + + QALVL PTRELA QVA E+ L + ++L + GGQ MQ +L Sbjct: 60 PIIETAVENAKRVQALVLTPTRELAIQVADEINSL-KGKKRIRVLPVYGGQAIHMQLKAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGR++DHL++GT+ LD L+ V+DEAD M +MGF D + ++++ A R+ Sbjct: 119 KSGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P + I+ D I + + + +P +Q F+E + + L R++ Sbjct: 179 TLLFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDA 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VF T+ D V L E G A +HGDL Q R++ L RF +LVAT Sbjct: 239 EPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 DVAARG+D+ L VVNF L DP+ VHR GRT RAG G+AIS AP E +R I+ Sbjct: 299 DVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFIT 357 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 212/377 (56%), Gaps = 3/377 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 + F L + P L L ++G+ T +Q ++P +L D A+TG+GKTAAFGL Sbjct: 12 LKNFEVLGLSQPL-LNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGL 70 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 LL ID + + QAL+L PTRELA Q+ G++ ++++ L ++ + GG Q + Sbjct: 71 PLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDI 130 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + IIVATPGRL+D +++ V LDAL +V+DEAD ML+MGF + ID ++ + R Sbjct: 131 RRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRN 190 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSL 238 LFSAT I I P + I+ + + IE Q + + KI L+R L Sbjct: 191 IWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALRRFLDY 250 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + VVFC TK+D Q V D LN G + +LHGD+ Q RD + RF N + ++L+AT Sbjct: 251 DEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLLIAT 310 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ + V++F L DPE + HR GRTARAG G++I+ + ++ I+ Sbjct: 311 DVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIAS 370 Query: 359 MLQIKLNWQTPPANSSI 375 L I+ PA +I Sbjct: 371 KLGIEFTQGEVPALEAI 387 >UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DL95_9BACT Length = 482 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 245/453 (54%), Gaps = 20/453 (4%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTR 81 GY TP+Q +L IL G+D V+AKTG+GKTAAF + LQ + A + Q L+L P R Sbjct: 24 GYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPALQHLRAEVQHPQVLILTPGR 83 Query: 82 ELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGT 141 EL Q++ E +L + L N ++ + GG + SL H +I ATPGRL+D ++G Sbjct: 84 ELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSL-HGAQVISATPGRLIDIKEQGL 142 Query: 142 VSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRD 201 ++ + +N LV+DEADR+ DMGF +A+ +++ P S QT+L SAT+ + I S + + Sbjct: 143 LNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQTVLCSATFTDDIKNFSKTLLKK 202 Query: 202 PLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDA 260 P+ IE S + +E+ + + L ++LL H+ +VFCN K+ V + Sbjct: 203 PVIIEDRSNIGSEENLEEWAVSVYPENHLKLTEKLLKKHKNDQVIVFCNHKERVDEVAEK 262 Query: 261 LNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAW 320 L+++G LH +E+ R+Q L F + R+LVATDVA+RG+DI L LVVN++L + Sbjct: 263 LDDMGFDVHPLHSGMEKNVRNQALKLFRDKQVRILVATDVASRGIDIPGLPLVVNYDLPY 322 Query: 321 DPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD-----MLQIKLNW--------Q 367 D +VHR GRTARAG SGL ISF + + + ML++ N Q Sbjct: 323 DFPDYVHRAGRTARAGKSGLVISFYNGRKEKTIKSFEERTGRQMLRVSFNQIMDEKQVSQ 382 Query: 368 TPPANSSIATLEA-----EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 P A ++ + + + + GGKK + G + L + GLD +DIG I V+ Sbjct: 383 KPLAKKKQDSVRKKANIRDCSRIIVYGGKKQGLNNGLLKKILAKNCGLDDSDIGYIEVNE 442 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 H + V + + + LQ KI G ++ L Sbjct: 443 KHTLLGVLREKSSRVLTTLQKTKISGHILKLEL 475 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/379 (40%), Positives = 224/379 (59%), Gaps = 13/379 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L ++P L + + GY TP+Q A+P ++AGKDV A+TG+GKTA F L LL Sbjct: 2 SFADLGLIP-ELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60 Query: 63 QQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 +I + QT+AL+L PTRELA QV ++ ++ LP + + + GG Sbjct: 61 HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLP-LRSVCVYGGVDIRP 119 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q+ L+ I++ATPGRLLDHL++ +++L + LV+DEADRMLDMGF I ++ Sbjct: 120 QQAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALL 179 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQ 233 P RQ+LLFSAT+ + I ++ ++ ++P IE+ + + I + SS K LL Sbjct: 180 PKQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLA 239 Query: 234 RLLSLHQP-SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 LL H+P + +VF +TK C + L G SA ++HGD Q+ R TL F +G Sbjct: 240 HLLR-HKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKL 298 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 RVLVATDVAARGLDI L V+NFEL E +VHRIGRT RAG+ G AIS + EE Sbjct: 299 RVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHW 358 Query: 353 ANIISDMLQIKLNWQTPPA 371 + I ++++++ + P Sbjct: 359 LSEIEKLIKLQIPQERVPG 377 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 153/400 (38%), Positives = 219/400 (54%), Gaps = 10/400 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F ++ L A L L GY TP+Q A+P ++ GKD+ A+TG+GKTAAF L + Sbjct: 16 TTFESMG-LNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPI 74 Query: 62 LQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L ++ + T+ LVL PTRELA Q+ + L ++ + GG +G Q Sbjct: 75 LHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHL-GFRVAVIFGGVKYGAQE 133 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +LQ I+VA PGRLLDH+Q+ + L + LV+DEAD+MLD+GF I ++ PA Sbjct: 134 RALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPA 193 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRL 235 RQ L FSAT P I ++G + +DP+ +++ + + I Q K LL + Sbjct: 194 KRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEM 253 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 S + + C+VF TK V L G A ++HG+ Q R++TL F G RVL Sbjct: 254 FSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVL 313 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARG+D+ + VVNFEL PE +VHRIGRTARAG G AISF A +E + Sbjct: 314 VATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKD 373 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 I + + K+ + ++ L+A + + GKKA M Sbjct: 374 IEKVTRQKIPAIDRRNDKALGQLDATIMATGV--GKKATM 411 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/378 (41%), Positives = 213/378 (56%), Gaps = 13/378 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L L P L ++ GY TPVQ A+PA L+G D+ V + TGSGKTAAF L + Sbjct: 2 SFSELG-LDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60 Query: 63 QQIDAS----LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 Q++ A + LVL PTRELA QV + + + L GG P+G+Q Sbjct: 61 QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L ++VATPGRL+DHL++G + L LV+DEADRMLDMGF D I + PA R Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP----PIEQQ-FYETSSKGKIPLLQ 233 QTLLFSAT + ++ + RD IEI +A+P IEQ+ + + K LL Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEI---EAVPHKEAKIEQRLLFADNMDHKNRLLD 237 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 LL + +VF +TK+ + + D L E G ++ +LHGD++Q R++ L R G R Sbjct: 238 ALLRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTR 297 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATDVAARG+D+ S+ V+NF+L E +VHRIGRT RAG +G+A+SF E Sbjct: 298 VLVATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLV 357 Query: 354 NIISDMLQIKLNWQTPPA 371 I ++ T P Sbjct: 358 KNIERYTGNRIEVHTLPG 375 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/333 (40%), Positives = 198/333 (59%), Gaps = 3/333 (0%) Query: 20 ELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQT--QALVL 77 +LGY TP+Q A+P IL+G+DV QA+TG+GKTAAF L L+ +D Q LVL Sbjct: 24 KLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLESRDRAPQVLVL 83 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA QVA + + A+ +PN + + GGQ +G Q +L+ ++V T GR++DH+ Sbjct: 84 APTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTGRVMDHI 143 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 +KGT+ LD L LV+DEAD ML MGF D + V+ Q LLFSAT P IA I Sbjct: 144 EKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQRLLFSATIPTDIADIIQE 203 Query: 198 VQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 R+P I++ + T + Q+F KI L RLL + + ++F TK Sbjct: 204 YLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDGVIIFVKTKTSTIE 263 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 V D L +G +++GD++Q R+ + +F + + VLVATDV ARG+D++ + V+N+ Sbjct: 264 VADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARGIDLERISHVINY 323 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 ++ D + +VHRIGRT RAG G++IS +E Sbjct: 324 DMPNDSDTYVHRIGRTGRAGREGISISLVPLKE 356 >UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Veillonella RepID=D1BLQ6_VEIPT Length = 432 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 133/350 (38%), Positives = 205/350 (58%), Gaps = 3/350 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M +F +L V + L + G TP+Q ++P + G DV +A+TG+GKT AF L Sbjct: 1 MKSFKSLGVCDEL-IIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ++ + Q Q L++ PTREL Q++ E + L L N IL L GG+ Q L Sbjct: 60 ILQRVHTDVHQEQVLIIAPTRELIKQISDEAKELGSIL-NVDILPLIGGKTIEAQLQQLG 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 P +I+ TPGRLLDH ++G++ LD + +V+DEAD+ML MGF I+++I A+RQ Sbjct: 119 RRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQL 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P+ I ++ P+++ + L I+Q+ Y + + K L +++ Sbjct: 179 LLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDD 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VFCN ++ + L G + +HGDL Q R Q L FA ++LVATD Sbjct: 239 NPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 +AARG+DI+ + V N+++ D + ++HRIGRT RAGNSG+A++F P++ Sbjct: 299 IAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQD 348 >UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=Gammaproteobacteria RepID=A8H2J8_SHEPA Length = 442 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 218/374 (58%), Gaps = 9/374 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L ++P L L L Y T +Q+ +PA+L GKDV AKTGSGKTAAF L ++Q Sbjct: 25 FTQLGLIPEL-LETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQ 83 Query: 64 QI------DASLFQTQALVLCPTRELADQVAGELRRLARFL-PNTKILTLCGGQPFGMQR 116 ++ A LVL PTRELA QVA R ++ + PN K L + GG +Q Sbjct: 84 KLAKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQM 143 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 SL+ I+VATPGRL+D + + LD TLV+DEADRML +GF++ +++++ P Sbjct: 144 QSLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPK 203 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236 ++QTLLFSAT+PE + ++ + +P+ +++ S++ + Q+ + K LL +L+ Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEE-STLVQRVITVNRNRKTALLAQLI 262 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +Q ++F + K C + L G +A H D Q R++ L F +G VL+ Sbjct: 263 KDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEISVLI 322 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATD+AARG+DI+ L +V+NFEL P ++HRIGR+ RAG +GLA+S + +E Q +I Sbjct: 323 ATDIAARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLI 382 Query: 357 SDMLQIKLNWQTPP 370 +++L + P Sbjct: 383 EKKNKLRLEREQIP 396 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 150/353 (42%), Positives = 207/353 (58%), Gaps = 7/353 (1%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI-----DASLFQT 72 L + GY+T TP+Q ALP L G+D+ A+TGSGKTA F L LLQ+I + + Q Sbjct: 41 LTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQKIASQNSEPAPKQV 100 Query: 73 QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGR 132 ALVL PTRELA Q+ E+ LAR + + + L GG G Q ++L+ H++VATPGR Sbjct: 101 LALVLAPTRELAIQIDQEVASLARNMRIRRAVVL-GGVSKGPQINALKRGVHVLVATPGR 159 Query: 133 LLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIA 192 LLD + T L + TLV+DEADRM DMGF I ++ P +R+T LFSAT P I Sbjct: 160 LLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEARRTALFSATMPVEIK 219 Query: 193 AISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTK 251 + + ++P +++ S + I+Q+ + K L +L+ +VF TK Sbjct: 220 KFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTILADEACKRVIVFTRTK 279 Query: 252 KDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLE 311 + V + L G SA + HG+ Q R + L F G RVLVATD+AARG+D+ ++ Sbjct: 280 RGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVLVATDIAARGIDVSNIT 339 Query: 312 LVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 VVNF++ DPE +VHR+GRTAR GNSG+AIS C P E Q I M++ KL Sbjct: 340 HVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEITAIERMMKQKL 392 >UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema RepID=B2S409_TREPS Length = 649 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 146/358 (40%), Positives = 206/358 (57%), Gaps = 3/358 (0%) Query: 22 GYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80 G+ TP+QAAA+P +LAG ++ +A+TG+GKTAAFGL L+Q++ + ALVL PT Sbjct: 65 GFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVPT 124 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELA QVA EL L R +I T+ GG Q +L+ IIV T GR++DH+++G Sbjct: 125 RELAAQVASELSSL-RIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGTTGRVIDHIERG 183 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 ++ L L ++DEAD ML+MGF + I+ + A + L+FSAT P I +I+ Sbjct: 184 SLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIASTFMG 243 Query: 201 D-PLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 + E+ +A P IEQ + KI L RL+ + +VFC TK D V Sbjct: 244 SYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADTVAK 303 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 +L+E +LHGD+ Q R++ L RF AR+LVATDVAARG+DI+ + VVN+ + Sbjct: 304 SLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITHVVNYSIP 363 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIAT 377 D + HR+GRT RAG+ G+AISF P E +R +S +L T P I T Sbjct: 364 HDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKASTVPLVEHILT 421 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 207/390 (53%), Gaps = 11/390 (2%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQT----- 72 + ELGY TPVQ +P +L GKDV A+TG+GKTAA+ L LL ++ ++ Sbjct: 16 VRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLHILNKKTQKSTTSKV 75 Query: 73 -QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPG 131 +AL+L PTRELA QV ++ + +P + + GG F Q L I++ATPG Sbjct: 76 VRALILVPTRELASQVGASVQAYGKNVPLSSA-AIYGGVKFTPQAKKLDKGIDILIATPG 134 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RLL+H++ G V L + +V DEADR+LDMGF D + ++ P RQTLLFS +++ Sbjct: 135 RLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKRQTLLFSVGLSKSV 194 Query: 192 AAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 +S + P+ + I++ D +EQ Y + K LL ++ H +VF T Sbjct: 195 KRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIGTHNWHQVLVFTKT 254 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 K+ V + LN G L LHGD R Q + F + RVLVATD+A+RGLDI+ L Sbjct: 255 KQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVATDIASRGLDIEDL 314 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPP 370 V+N+EL D E + HR GRT RAG G AIS A EE + I +L+ + + P Sbjct: 315 PYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEIEKILKYTIKTEFYP 374 Query: 371 ANSSIATLEAEMATLCIDGG---KKAKMRP 397 + +E E I +KA RP Sbjct: 375 GFETKEWVEKEAKKHTIQAKIDREKANKRP 404 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 223/367 (60%), Gaps = 12/367 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F TL L P L L++L + + TP+Q +P I+ G+DV A+TGSGKT F L L Sbjct: 2 SFETLG-LNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60 Query: 63 ---QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + + Q LVL PTRELA Q+ R ++L + +L L GG Q D L Sbjct: 61 HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVL-LVGGTDMRRQIDFL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ATPGRL+DH+Q+GT++L ++T+V+DEADRMLDMGF ++ +++ RQ Sbjct: 120 RRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKG-KIPLLQRLLS 237 TLLF+AT P I ++ Q+DP+ I +++ A P I+Q+ S K LL+ +L+ Sbjct: 180 TLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILT 239 Query: 238 LHQPSS--CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 Q + ++F TK+ + + + L G + +LHGD Q R++ L +F G R+L Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI ++ V+N++L PE +VHRIGRT RAG SG AISFC P + N+ Sbjct: 300 VATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPAD---RNL 356 Query: 356 ISDMLQI 362 + D+ ++ Sbjct: 357 LRDIERL 363 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 250 bits (638), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L L ++ L ELG+ T +Q A+P +L G DV Q++TG+GKTAA+ L +L Sbjct: 4 SFENLG-LSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLPIL 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +++D Q L+L PTRELA QVA L+ ILT+ GGQ Q SL+ Sbjct: 63 EKVDIQDPSVQVLILTPTRELAQQVAEALKDFT-VRRRLYILTVYGGQSIDRQIRSLERG 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+V TPGR++D +++ + LD+L V+DEAD ML MGF D + +++ P SR T Sbjct: 122 VQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTAC 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSK-GKIPLLQRLLSLHQ 240 FSAT P I + + + P+ I ++ T A P IEQ Y K LQ +L + Sbjct: 182 FSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLEIED 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P S ++F TK+ + L E+G HG+L Q R++ + RF +G +++VATD+ Sbjct: 242 PESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATDI 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ L V+N++L + E ++HRIGRT RAG +G AIS + + I L Sbjct: 302 AARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERKL 361 Query: 361 QIKLNWQTPPANSSI 375 + K++ P S + Sbjct: 362 RQKIDICKIPNRSEV 376 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 156/384 (40%), Positives = 217/384 (56%), Gaps = 15/384 (3%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ------ 71 LN Y T +Q A+P +AG+D++ A+TG+GKTAAF L LL ++ + Q Sbjct: 16 LNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLDRLIKNPRQGKLRGR 75 Query: 72 -TQALVLCPTRELADQVAGELRRLARF-LPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 +ALVL PTRELA Q+ +RR R + N+ LT+ GG Q L +++AT Sbjct: 76 LPRALVLSPTRELAGQIHDSVRRYGRHAMQNS--LTIYGGVSQVPQVKGLNAGQDVLIAT 133 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGRL D +Q+G ++L + V+DEADRMLDMGF I +I P +QTLLFSAT P Sbjct: 134 PGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQQKQTLLFSATMPP 193 Query: 190 AIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 I ++ ++ DP+ I I+ A I Q Y +K K LL +L + + VVF Sbjct: 194 EIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASVLKREEVTRAVVFV 253 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 TK C L + G ++HG+ Q R +TL F NG +VLVATDVAARGLD+ Sbjct: 254 RTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVLVATDVAARGLDVT 313 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQT 368 + V+N++L +PE +VHRIGRT RAG SG+AISFC ++ QR ++ D+ +I L + Sbjct: 314 GVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFC--DDEQRG-LLRDVQRI-LGKKI 369 Query: 369 PPANSSIATLEAEMATLCIDGGKK 392 P N + A + DGG K Sbjct: 370 PVENEMPDGIPGLPANIDRDGGAK 393 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 143/353 (40%), Positives = 217/353 (61%), Gaps = 14/353 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F +LN L PA L + E GY T TP+QA A+P ++ G D+ A+TG+GKTA F L L Sbjct: 2 SFESLN-LNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60 Query: 63 QQIDASLFQTQA-----LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 + A+ ++++ LVL PTRELA QV R+ +FL + +++ GG P+ +Q Sbjct: 61 NLL-ATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFL-RARTVSIVGGMPYPLQNK 118 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L I+VATPGRLLDH+++G + L L L++DEADRMLDMGF ++ + A Sbjct: 119 LLSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAE 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFY---ETSSKGKIPLLQ 233 RQTLLFSAT IA I+ ++ ++P +++ + + IEQ+ + + + K K LL+ Sbjct: 179 RQTLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNK--LLE 236 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 LL + + ++F +TK+ + + L G +LHGD+ Q R++TL + +G + Sbjct: 237 HLLIAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVK 296 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 VLVATDVAARG+D+ + V+N++L E +VHRIGRT RA N+G+AISF + Sbjct: 297 VLVATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFAS 349 >UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLD4_FIBSS Length = 463 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 147/400 (36%), Positives = 221/400 (55%), Gaps = 11/400 (2%) Query: 6 TLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI 65 T ++LP Q L E G+ + PVQ ++P +LA +D+ VQ+KTGSGKT A+ L LLQ I Sbjct: 33 TFDMLPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVI 92 Query: 66 DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHI 125 QAL+L PTREL QV E +L++ K + + GG + Q +L+ H+ Sbjct: 93 VRDHPYPQALILVPTRELCIQVQEEFEKLSKGT-GIKSVAIFGGVSYEPQIKALRSGVHV 151 Query: 126 IVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSA 185 IVATPGRL+DH+Q+G V L ++ LV+DEAD ML MGF + + ++ P + ++SA Sbjct: 152 IVATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCTMYSA 211 Query: 186 TWPEAIAAISGRVQR---DPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 T P+ + +++ QR D L++ D A +E ++Y K + ++L + P Sbjct: 212 TIPQTVKSLAREFQRPGADFLSLSYDKVIA-NNLEHRYYTCDVMEKDSMTIKVLEYYNPE 270 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 SC++FCN K+D + L+ G +L GD+ Q R++TL F + ++L+ TDVAA Sbjct: 271 SCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAA 330 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ + V+ ++ D EV+VHR GRTARAG SGL IS P E + I Sbjct: 331 RGIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLITPVEEIDLRQTAVDFGI 390 Query: 363 KLNWQTPPANSSIATLEAEMATLCID------GGKKAKMR 396 P N IA +E + ++ GG+KA R Sbjct: 391 NFIKMDPLTNEEIAKKVSERTKVRLEEVRKHFGGQKATER 430 >UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micromonas sp. RCC299 RepID=C1EIE9_9CHLO Length = 576 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 147/356 (41%), Positives = 198/356 (55%), Gaps = 16/356 (4%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAF---GLGLLQQIDASLFQ--- 71 ++ GY + TP+QA + P L G D+ AKTGSGKT + G+ ++ F Sbjct: 140 VDRAGYKSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPGIMHIRGRQGPSFPRPV 199 Query: 72 -TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATP 130 VL PTRELA Q+ E + R + + L GG P G Q L+H P I +ATP Sbjct: 200 GPTVTVLAPTRELATQIQDETAKFGRAI-GMYSVCLYGGAPKGHQLRELRHGPQIAIATP 258 Query: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 GRL D L+ G V+L + +V+DEADRMLDMGF I +++ APA RQTL F+ATWP A Sbjct: 259 GRLNDFLESGAVNLGSSTYVVLDEADRMLDMGFEPQIRKILQRAPAQRQTLFFTATWPRA 318 Query: 191 IAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL-----HQPSSCV 245 + ++ + +P+ + I TD L + G QRL+ + QP + Sbjct: 319 VVRVATAILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRLMEVLRNPPTQPLKAI 378 Query: 246 VFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305 VFC TKK C + ++ +G +HGD EQR+RD L +F +G VLVATDVAARGL Sbjct: 379 VFCGTKKMCDQIGRSMGGMG---AVIHGDKEQRERDWILNQFRSGRVPVLVATDVAARGL 435 Query: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 DIK + +VVNF+ E +VHRIGRT RAGN G A SF P E A + +L+ Sbjct: 436 DIKEVNMVVNFDFPNQIEDYVHRIGRTGRAGNKGWAHSFIEPGEGNMARKLIPILR 491 >UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EED4_9EURY Length = 435 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/390 (35%), Positives = 221/390 (56%), Gaps = 9/390 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F ++N L LT L+E+ + T VQ A+P L GKDV V++KTGSGKTAAF + +L Sbjct: 2 FDSMN-LRKEILTALHEMKFEEPTEVQKQAIPLELEGKDVVVKSKTGSGKTAAFVIPILN 60 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 I+ + Q A+++ PTRELA QV +R + R + K +T+ GG Q +++ Sbjct: 61 SIEKNERQA-AMIITPTRELALQVTEVVREIGRHMQ-LKAVTIYGGASINYQIREIRNGA 118 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +II+ TPGRL+D +++ ++ D++ LV+DE D MLDMGF D I ++ P RQT+ F Sbjct: 119 NIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMFF 178 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSLHQPS 242 SAT PE I I+ +P+ + ID+ + Q FY +S K L L+ +P Sbjct: 179 SATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLAYLNEKKPE 238 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++FC T+++ + + + +G A+ +HG L Q R+ +L F G +L+AT+VAA Sbjct: 239 KAIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-VNMLIATNVAA 297 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLDI ++ ++NF+ DP+ +VHR+GR+AR G SG A + E I + ++ Sbjct: 298 RGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSGKAFTIFTHGEKYLVYEIENYAKV 357 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKK 392 KL++ ++T +M + GK+ Sbjct: 358 KLSY----LEFDLSTYRTKMNEFYKENGKQ 383 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 150/356 (42%), Positives = 215/356 (60%), Gaps = 10/356 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F+TL + P L ++E Y T TP+QA ++P +L G D+ A+TG+GKTAAF L Sbjct: 56 LTDFTTLGLAEPL-LRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLP 114 Query: 61 LLQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L +I A+ + +ALVL PTRELA Q+A R +F + + + G +P G Q Sbjct: 115 ILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKP-GPQ 173 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 ++ ++VATPGRLLDH+ G + LDA+ T+V+DEAD+MLD+GF AI ++ P Sbjct: 174 ARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLP 233 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP--PIEQQFYETSSKGKIPLLQ 233 RQ ++FSAT P+ I A++G RDP + + S ++ P I+QQ + + K L Sbjct: 234 RQRQAVMFSATMPKPIRALAGEFLRDPREVAV-SVESKPVDRIDQQVLLLAPEEKKDKLA 292 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 LL+ +VF TK V L + G A ++HG+ Q R++ L +F +G R Sbjct: 293 WLLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIR 352 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 VLVATD+AARG+D+ ++ VVNFEL PE +VHRIGRTARAG G+AIS P E Sbjct: 353 VLVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSE 408 >UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM67_9FIRM Length = 424 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 134/351 (38%), Positives = 203/351 (57%), Gaps = 5/351 (1%) Query: 1 MTAFSTLNVLPP-AQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 M AF L V+ P AQ L + G T +Q A++PAI GKD+ +++TG+GKT A+ L Sbjct: 1 MNAFIKLGVIEPLAQ--ALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLL 58 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q++D TQ L++ PTRELA Q+ LR A L + + GG+ Q L Sbjct: 59 PLVQRVDVKKGGTQVLIMTPTRELAKQIFDVLRPFA-ILMEADVADIIGGRTIENQIQKL 117 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + PHII+ TPGRLLDH+++ ++ L + T+V+DEAD+ML GF + ID ++ P RQ Sbjct: 118 KREPHIIIGTPGRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQ 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P ++ + + + ++ +EQ+ YET K LL R L Sbjct: 178 VLLFSATMPPEAKKLAHKYMKSAVVADVAEKAVASTVEQRVYETVKTHKFSLLVRHLKEI 237 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSAL-SLHGDLEQRDRDQTLVRFANGSARVLVAT 298 P VVFCNT++ + L E + +HG++ Q R+Q + F +VLVA+ Sbjct: 238 NPYMAVVFCNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVLVAS 297 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 D+AARGLD++ + V N+++ + E ++HRIGRT RAG G++I++ PE+ Sbjct: 298 DIAARGLDVEGITHVFNYDIPRNLEYYIHRIGRTGRAGTQGVSITYATPED 348 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 212/365 (58%), Gaps = 17/365 (4%) Query: 21 LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI-DASLFQT----QAL 75 +GY T TP+Q ++P++L GKD+ A+TG+GKTAAF L +LQ++ D+ F++ +AL Sbjct: 19 VGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPILQRLLDSGKFRSPKTCRAL 78 Query: 76 VLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQHAPHIIVATPGRL 133 +L PTRELA QV R A+F T I T C GG Q+ L ++VATPGRL Sbjct: 79 ILLPTRELAIQVEDCFREYAQF---TAISTACIFGGVNDNPQKQKLIRGVDVLVATPGRL 135 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 LD + + +SL L V+DEADRMLDMGF I V+ P RQ L FSAT PE I+ Sbjct: 136 LDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDRQNLFFSATMPEEISK 195 Query: 194 ISGRVQR-DPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH-QPSSCVVFCNT 250 ++ + R +P+ +E+ + + I Q+ Y + K LL+ LL+ H + +VFC T Sbjct: 196 LAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKELLAEHPEMKKVLVFCRT 255 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 K + L + G ++HG+ Q R + L F RVLVATD+AARG+D+ + Sbjct: 256 KHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVLVATDIAARGIDVDDV 315 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPP 370 V N++L + E VHRIGRTARAG G+AISFC+P+E I + ++K+ P Sbjct: 316 SHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLRGIEKLTRVKI----PE 371 Query: 371 ANSSI 375 + SI Sbjct: 372 GDQSI 376 >UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Moritella sp. PE36 RepID=A6FEC9_9GAMM Length = 460 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 150/363 (41%), Positives = 216/363 (59%), Gaps = 9/363 (2%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ-IDAS 68 + P ++++ LG+ T VQ AA+P IL G D+ ++TGSGKT A+GL +LQ+ + Sbjct: 8 IDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQRMLKQR 67 Query: 69 LFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHI 125 F+ +A++L PTRELA QV ++ L L + +I + G + F Q L+ P + Sbjct: 68 RFEHRAVRAVILAPTRELAIQVHANMKHLGMSL-DYQIQLIIGRESFQHQEKLLRKNPEV 126 Query: 126 IVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP-ASRQTLLFS 184 ++ATPGRLLDH+++ ++SL+ L LV+DEADRMLDMGF D + + AP RQT+LFS Sbjct: 127 LIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQTMLFS 186 Query: 185 ATWPEA-IAAISGRVQRDPLAIEID-STDALPPIEQQ-FYETSSKGKIPLLQRLLSLHQP 241 AT +A I +V R P IEI+ S D IEQ+ F+ + K L L+ Sbjct: 187 ATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVKSEDY 246 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++F TK D + + L + A S+HGD+ Q R +TL F G VLVATDVA Sbjct: 247 RQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATDVA 306 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDI++L V+NF+L +PE +HR GRT RAG +G+AIS +P++ I L+ Sbjct: 307 ARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFGKIQSYLK 366 Query: 362 IKL 364 +KL Sbjct: 367 VKL 369 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 201/349 (57%), Gaps = 3/349 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGLLQQIDAS 68 L + L L + G+ TP+Q +P L G+ D+ QA+TG+GKT AFG ++++I Sbjct: 12 LSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIEKIPEK 71 Query: 69 LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVA 128 + QA+VL PTRELA QV+ EL L + I+ + GGQ Q L+ I+V Sbjct: 72 SGKVQAIVLTPTRELAIQVSEELNSL-KGDKKLHIVPIYGGQSMTQQFRMLKSGVDIVVG 130 Query: 129 TPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWP 188 TPGR++DHL++ +++L+ + V+DEAD ML+MGF D I ++++ ++ L FSAT P Sbjct: 131 TPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFFSATMP 190 Query: 189 EAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247 + I I + ++ + I D + EQ ++E K L R++ + +VF Sbjct: 191 KPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIEDEFYGLVF 250 Query: 248 CNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI 307 C TK D + L + G +A +LHGDL QR+R++ L RF +LVATDVAARG+DI Sbjct: 251 CRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVAARGIDI 310 Query: 308 KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 L V+N+ L DPE +VHRIGRT RAG G AI+F E +R I Sbjct: 311 MDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYI 359 >UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 Tax=Alteromonadales RepID=Q480Z7_COLP3 Length = 399 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 210/369 (56%), Gaps = 9/369 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M+ F ++L + + +N GY TP+Q +PA++ G D+ A+TG+GKTAAF L Sbjct: 1 MSEFKAFSLLE-SIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLP 59 Query: 61 LLQQ-----IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 ++ + ID T++L+L PTRELA Q+ + + L K + GG Q Sbjct: 60 IINKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGL-GLKTKVVYGGVGRQAQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 DS++ I+VATPGRLLD ++ G ++ AL V+DEAD MLDMGF + +I P Sbjct: 119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQR 234 SRQTLLFSAT P I ++ + DP I+I + T + + Q Y K+PLL Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFN 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +L+ ++FC TK + AL + +A SLH Q R++ L F + + RV Sbjct: 239 ILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRV 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA-QRA 353 LVATDVAARG+D+ ++ LV+N+ L DP ++HRIGRTARAG SG+AISF + Q Sbjct: 299 LVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLT 358 Query: 354 NIISDMLQI 362 NI + + Q+ Sbjct: 359 NIENSIGQV 367 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/344 (39%), Positives = 201/344 (58%), Gaps = 4/344 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ +N++ P L + E G++ +P+Q +P +L G+D+ A+TG+GKTAAF L +LQ Sbjct: 3 FNEMNLIKPL-LQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQ 61 Query: 64 QIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + +AL++ PTRELA Q+ ++ + K + GG +Q +SL+ Sbjct: 62 SLSKGEGSGVRALIITPTRELAIQIYESFECFGKY-TSLKQSVIYGGVGQSLQVNSLKAG 120 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I++ATPGRL D + +G ++LDA+ V+DEAD+MLDMGF + I VI+ P +RQTLL Sbjct: 121 IDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTLL 180 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I +++ + +P I+I T + IEQ Y KI LL L+ H+ Sbjct: 181 FSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKM 240 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S +VF TK V D LN+ ++HG Q R L F G +VLVATD+A Sbjct: 241 SRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDIA 300 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 ARG+DI L VVN+++ E+++HRIGRT RAG G AI+ C Sbjct: 301 ARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLC 344 >UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillonellaceae RepID=C9KJK1_9FIRM Length = 441 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 142/346 (41%), Positives = 200/346 (57%), Gaps = 3/346 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L + PA L G TPVQ A+P + AG D V+A+TG+GKT AF L Sbjct: 1 MTTFQELGI-RPALCDVLRSHGIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++I TQALV+ PTRELA Q+A + L+ + L + GGQ Q+ L+ Sbjct: 60 IIEKIKPQAAVTQALVITPTRELAIQIAKVAQSLS-AAADISSLVIFGGQDIERQKQKLR 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 P +I+ TPGRLLDHL++ T+ L +N +V+DEAD M+ +GF + ++ ++ A RQ Sbjct: 119 RHPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEATAADRQL 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P+ + A+S R P +EI S L I+Q +T + KI L +++ Sbjct: 179 MLFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLCEIINQE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 QP +VFC+TK+ V AL G LHGDL Q R L RF ++L ATD Sbjct: 239 QPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQILCATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 +AARGLDI+ + V N+++ D E ++HRIGRT RAG G AI+F Sbjct: 299 IAARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFV 344 >UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidales RepID=A6LBU1_PARD8 Length = 426 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/403 (35%), Positives = 225/403 (55%), Gaps = 15/403 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L+ L A L L ++ + TPVQ +P IL GKD+ A+TG+GKTAA+ L ++ Sbjct: 3 FDELD-LEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVIN 61 Query: 64 QIDASLFQT---QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQ---PFGMQRD 117 ++ T A+++ PTRELA Q+ +++ F+P+ + + GG + Q+ Sbjct: 62 ELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKR 121 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ I++ATPGRLL H++ GTV L ++ V+DEADRMLDMGF D I V + P Sbjct: 122 GLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPY 181 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLS 237 QT++FSAT P I ++ + +DP ++I + I Q Y K+ +LQ L + Sbjct: 182 CQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQDLFT 241 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 +P ++F ++K + + L + + ++H DLEQ R++ + F +G +LVA Sbjct: 242 QSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVA 301 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGN-SGLAISFCAPEEAQRANII 356 TDV ARG+DI ++LVVNF++ DPE +VHRIGRTAR N GLAI+F + +E + I Sbjct: 302 TDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRI 361 Query: 357 SDMLQIKLNWQTP--PANSSIATLEAEMATLCIDGGKKAKMRP 397 D L+ K ++ P P + E E + K+ + RP Sbjct: 362 EDFLE-KEVYKIPVSPEFGEVPLYEPEKYGM----NKRGRGRP 399 >UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNP6_9BACT Length = 436 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/337 (40%), Positives = 206/337 (61%), Gaps = 7/337 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 L +L LGY TP+QAAA+P +L G D+ A+TGSGKTAAF L +++++ A + + +A Sbjct: 13 LRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIERL-AGMEEQKA 71 Query: 75 ----LVLCPTRELADQVAGELRRLARFLP-NTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 LVL PTRELA QV + R A P ++L GG + Q + ++VAT Sbjct: 72 KPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKAAYAGVEVVVAT 131 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGRL+D ++ +V LD + LV+DEADR+L +GF++ ++ ++ P RQ LLFSAT+P+ Sbjct: 132 PGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGRQNLLFSATFPQ 191 Query: 190 AIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 + +++ + +DP+ IE+++ + + I Q+ E + LL+ LL +VF Sbjct: 192 NVVSLANALLKDPVKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLLETEGWERVLVFV 251 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 +K+ + V L + G A++LHG++ Q R ++L RF RVL+ATDVAARG+DI Sbjct: 252 GSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMATDVAARGIDIA 311 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 L VVN++L +VHRIGRT RAG SGLA++F Sbjct: 312 GLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFI 348 >UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8H2_9CLOT Length = 480 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/483 (29%), Positives = 243/483 (50%), Gaps = 35/483 (7%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M +F+ N L L +L+ L Y + VQ+ +P +L KD+ V++KTG+GK+AAF + Sbjct: 1 MNSFNNFN-LDTEILKSLDILDYKIPSQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + +I + + LV+ PTRELA QV E+ ++ R L K + G +P Q L+ Sbjct: 60 ICNKIKKLENKLKVLVIVPTRELALQVKEEIEKIGR-LKMIKCSVILGKEPLKNQILELK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++IVATPGR++DH+ +G+V LD L+ ++DE D+M GF I+ +++ P + Sbjct: 119 QGTNVIVATPGRMIDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCK 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKG-KIPLLQRLLSL 238 FSAT + I +D IE+D + L IE+++ + + K L+ +L Sbjct: 179 AFFSATVDNDLKEICNGYMKDYEYIEVDEEEILKNQIEEKYIKVEKQELKYDALKNVLYK 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P + ++F NTKK + + + + G +HGD+ Q R + F +L+++ Sbjct: 239 FKPETTIIFTNTKKQAEVLYENMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNILISS 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAIS--------------- 343 D+ +RG+ I + LV+N+++ D E++VHRIGRT RAG G AIS Sbjct: 299 DIISRGIHIDDVSLVINYDIPSDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFENIEV 358 Query: 344 ------------FCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGK 391 +C ++ + I ++L N N + E+ + I GK Sbjct: 359 YTKNKIEPIGIEYCEKDKIEYQKTIKELL----NKYALVENQEQDEFKGEVVKIHISIGK 414 Query: 392 KAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTC 451 K K+R GD++GAL+ L+ +D+G I ++ + V + K + +K K Sbjct: 415 KKKIRIGDIVGALSNIDSLENSDLGVIKIYDNYSTVDILNQKGKKFLNDYKEIIVKNKKA 474 Query: 452 RVR 454 ++R Sbjct: 475 KIR 477 >UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickettsia RepID=A8F2F8_RICM5 Length = 415 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 212/363 (58%), Gaps = 21/363 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + A T+N+ P T +Q ++P +AG D+ ++TGSGKT A+ L Sbjct: 16 IIALETMNITEP--------------TEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLP 61 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLA-RFLPNTKILTLCGGQPFGMQRDSL 119 L+ + +T AL+L PTRELA Q+ L ++ + N+ +L GG+P Q L Sbjct: 62 LIDSFIKN--KTTALILVPTRELATQIHSTLNKVTISYKINSAVL--IGGEPMPKQFMQL 117 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + P +I+ TPGR++DHL +G++ +D + V+DE DRMLDMG + ++++ +F P RQ Sbjct: 118 KKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQ 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 L+FSAT P+ I A+S + +P+ I + +T+ A I+Q+ S K K L + L Sbjct: 178 VLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSELTKQLG- 236 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 ++ S ++F TK+ + L +A ++HGDL QR R++ ++ F + R++VAT Sbjct: 237 NREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 296 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V+N++L PE ++HRIGRT RAG +G A+SF +P++ R + I Sbjct: 297 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWHAIDR 356 Query: 359 MLQ 361 ++ Sbjct: 357 LVN 359 >UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Y9_9FIRM Length = 474 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 154/430 (35%), Positives = 223/430 (51%), Gaps = 20/430 (4%) Query: 21 LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80 L Y TPVQ +PA L G+D VQAKTGSGKTAA+ L + QQ QAL+L PT Sbjct: 21 LHYTQPTPVQEQVIPAFLEGRDCLVQAKTGSGKTAAYALPVCQQCHFEDRLPQALILAPT 80 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELADQ+ E++ + F T L G QP Q+ L+ I++ TPGR+ DH+++G Sbjct: 81 RELADQITQEIQNFSLFRRLT-CARLVGRQPMKSQKYQLKQRVQIVIGTPGRVWDHIEQG 139 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 T+ L L +V+DEAD+M +G ++ + ++ P+ QT LFSAT I ++ Sbjct: 140 TLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLPSPIQTCLFSATLSPEILQLAEITVH 199 Query: 201 DPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 DPL I+IDS I S+ K+ L + S Q S +VFC+ + + V + Sbjct: 200 DPLTIQIDSPCQTNQNIRLTSLTVSNTEKLTGLLHVFSTIQAPSAIVFCDRQMTAEEVAE 259 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 L + G A +LHG +EQ R L +F G R+L ATDVAARGLDI L L+V+++L Sbjct: 260 QLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRILCATDVAARGLDIDGLSLIVHWDLP 319 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK---------------L 364 + E +HR GR R G +++ P + R + + L+ + Sbjct: 320 LNLESFIHRCGRCGRIDQLGTSVALLTPSQKSRYSSFLETLETQDEAFELDPFDDHSGLA 379 Query: 365 NWQTPPAN--SSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 +W+T A L+ AT+ I G++ K+RPGD +GAL G IG I V Sbjct: 380 HWKTKNQRQPEKAAELKQNKATILIRAGRQHKLRPGDFVGALCS-AGYSAEQIGTIEVQE 438 Query: 423 AHVYVAVRQA 432 ++ + QA Sbjct: 439 RVTFITLIQA 448 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 152/396 (38%), Positives = 227/396 (57%), Gaps = 19/396 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L++ P Q + E GY + TP+QA A+P LAG+DV A+TG+GKTA+F L Sbjct: 10 MTTFADLDLNPKVQKA-IVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLP 68 Query: 61 LLQQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 ++ + A ++LVLCPTRELA QVA A+ + TK L L GG F Q Sbjct: 69 MITMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKAL-LIGGVSFKEQEQ 127 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 ++ +++ATPGRLLDH ++G + L+ + +V+DEADRMLDMGF I+ + P + Sbjct: 128 AIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFT 187 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEID---STDALPPIEQQFYE-------TSSKG 227 RQTL FSAT I I+ +P IE++ +T A IEQ+ E +K Sbjct: 188 RQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSAT--IEQRLIEFKAPRRDAQAKM 245 Query: 228 KIPLLQRLLSLHQPS--SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLV 285 K +L+ ++ + + ++FCN K D V +L + +A +HGDL+Q R +TL Sbjct: 246 KRDMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLA 305 Query: 286 RFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 F +GS +LVA+DVAARGLDI ++ V+N+++ E +VHRIGRT RAG +G+AI+ C Sbjct: 306 GFRDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLC 365 Query: 346 APEEAQRANIISDMLQIKLNWQTPPANSSIATLEAE 381 P + + I +++ + P ++ E E Sbjct: 366 VPSDEKYLGAIEGLIKQPIPRAEAPMDAGTPKAETE 401 >UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVN9_DYAFD Length = 481 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 148/395 (37%), Positives = 222/395 (56%), Gaps = 3/395 (0%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ-TQ 73 L ++ + Y TP+Q A+P IL+GKD+ A+TG+GKTAA+ + +L ++ + T Sbjct: 13 LNAVDSMNYQQATPIQEQAIPHILSGKDLLACAQTGTGKTAAYLIPILDKVAHEANEHTG 72 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCG--GQPFGMQRDSLQHAPHIIVATPG 131 AL+L PTRELA Q+ +++ L F+ T I G G + Q+ +L II+ATPG Sbjct: 73 ALILVPTRELAVQIDQQIQGLGYFVGATSIAVYGGNKGPEWDQQKKALTQGADIIIATPG 132 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RL+ HLQ G V L LV+DEADRMLDMGF I ++ + P RQTL+FSAT P I Sbjct: 133 RLIAHLQLGYVHFRDLRHLVLDEADRMLDMGFLGDILKIMSYLPNERQTLMFSATMPPKI 192 Query: 192 AAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTK 251 ++ R+ ++P I + + I+QQFY + K+PLL LL + S V+F + K Sbjct: 193 GDLAKRILKEPEEIRLAVSRPADRIDQQFYLAKDEQKLPLLMHLLKGVENISMVLFTSRK 252 Query: 252 KDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLE 311 + + + AL ++G A + D EQ +R+ L F N +LVATDV +RG+DI +L Sbjct: 253 SNVEPIVRALRKLGLGAHGISSDSEQGEREIVLRDFKNRQFPILVATDVLSRGIDIDNLS 312 Query: 312 LVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPA 371 VVN+++ DPE +VHRIGRTARA + G A++F ++ + I + + +L ++ A Sbjct: 313 HVVNYDVPRDPEDYVHRIGRTARAESKGTAMTFINEQDQKYVLKIERLFEKELEKKSLTA 372 Query: 372 NSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTG 406 + GG+ K R GA +G Sbjct: 373 ELGLGEAPLFEPPRLRSGGRNKKNRKKPAPGAPSG 407 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 204/365 (55%), Gaps = 3/365 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F N+ P Q + +GY+T TP+Q A+P++++G+DV A+TG+GKTAAFGL +L Sbjct: 3 FKQFNLHPKVQ-AGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLH 61 Query: 64 Q-IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + + + LVL PTRELA+Q+ L + + + +T+ GG Q L+ Sbjct: 62 RLVQEERGHVRGLVLAPTRELAEQINDALNGMGK-QTRLRSVTVYGGVNINTQIKKLKEG 120 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+VA PGRLLDH+ +GT+ L + LV+DEAD+M DMGF + ++R P RQ L+ Sbjct: 121 AEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM 180 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 FSAT P+ I ++ + R+P+ +++ T + Y K PLL +L Sbjct: 181 FSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F TK + V + L + G A SL G+L Q R L F +G+ +++VATD+AA Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ + V+N+++ PE + HRIGRT RA +G A + E+ I +L Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGT 360 Query: 363 KLNWQ 367 K+ + Sbjct: 361 KIERR 365 >UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1N6E2_9GAMM Length = 475 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/346 (41%), Positives = 207/346 (59%), Gaps = 11/346 (3%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI------DAS 68 + ++ +LG+ +P+QA ALP LAG+D+ +A+TG+GKTAAF + +LQ++ + Sbjct: 110 MRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQKLLTVKPEERF 169 Query: 69 LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH-APHIIV 127 + +AL+L PTRELA Q+A + L+++ + I+T+ GG + Q++ L++ ++V Sbjct: 170 ASEPRALILAPTRELAMQIAKDADGLSKYA-DLNIVTVLGGVDYDKQKEQLENEVVDVVV 228 Query: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS--RQTLLFSA 185 ATPGRLLD+LQ+G V LD + LV+DEADRMLDMGF + +IR P RQT LFSA Sbjct: 229 ATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKSIRQTQLFSA 288 Query: 186 TWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSC 244 T+P + A+S P +EI+ A ++QQF K L L Sbjct: 289 TYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDNALIEYLEKENTGKS 348 Query: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304 ++F N + C+ + D LN+ G AL L G++ Q R +TL RF + VLVATDVA RG Sbjct: 349 IIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDGAVLVATDVAGRG 408 Query: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + + + V N+ L DPE +VHRIGRT RAG SG AI+F EA Sbjct: 409 IHVDGITHVFNYNLPDDPEDYVHRIGRTGRAGESGTAITFIDEYEA 454 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 140/356 (39%), Positives = 210/356 (58%), Gaps = 9/356 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ- 73 L + ELGY TPVQAAA+P++L +D+ A+TG+GKTA+F L ++ + + + Sbjct: 27 LQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARM 86 Query: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPG 131 +L+L PTRELA QVA + ++ + L L GG P Q+ +L+ +++ATPG Sbjct: 87 PRSLILEPTRELAAQVAENFEKYGKYHKLSMSL-LIGGVPMAEQQAALEKGVDVLIATPG 145 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RLLD ++G + L + LV+DEADRMLDMGF I+ + P SRQTLLFSAT P AI Sbjct: 146 RLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPPAI 205 Query: 192 AAISGRVQRDPLAIEID---STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 ++ R +P IEI + + L I+Q+ E S + K L +L + + ++FC Sbjct: 206 KKLADRFLSNPKQIEISRPATANTL--IDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFC 263 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 N K + + L + G S +HGD+ Q +R L RF NG VLVA+D+AARGLD+K Sbjct: 264 NRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVK 323 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 + V NF++ P+ ++HRIGRT R G SG A++F P + + I ++ +++ Sbjct: 324 GISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEKLMGVEI 379 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 149/352 (42%), Positives = 204/352 (57%), Gaps = 7/352 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS+L + P Q + E GY T +P+QA A+PA+L GKDV A+TG+GKTA F L LL Sbjct: 2 SFSSLGLSLPIQKA-VTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 63 QQID----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + A Q +ALVL PTRELA QV+ + ++LP + + GG P Q Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQK 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+H ++VATPGRLLD +Q+ V + L LV+DEADRMLDMGF I ++ PA R Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLS 237 Q L+FSAT+ + I ++ + P+ I + +A ++Q K LL +L+ Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIK 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 +VF TK + +L + SA ++HG+ Q R + L F +G RVLVA Sbjct: 240 QEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 TD+AARGLDI L VVNF+L PE +VHRIGRT RAG SG A+S + EE Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEE 351 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/425 (36%), Positives = 228/425 (53%), Gaps = 25/425 (5%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ- 73 + L LGY TP+Q A+P ++ G D+ +A TG+GKTAAF L +L + S +T+ Sbjct: 33 VERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPILHGLARSTARTKP 92 Query: 74 -ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGR 132 +L+L PTRELA QVA + + + L ++L + GG P Q +L ++VATPGR Sbjct: 93 TSLILVPTRELAMQVAESVAKYGQPL-GVRVLPIYGGAPMDQQIRALDRGIDVVVATPGR 151 Query: 133 LLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIA 192 LDH+++ T+ LDA+ +V+DEAD MLDMGF++ I+ ++ P RQT LFSAT I Sbjct: 152 ALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQTALFSATMAPRIK 211 Query: 193 AISGR---------VQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 AI+ + V RDP+ LP + Q Y + K+ L R+L P++ Sbjct: 212 AIAVKHLKNATEIHVTRDPV-----PAGELPKVRQTAYVVQRQYKLAALGRVLDGESPAA 266 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 ++FC T+ + + +AL G +LHG + Q RD+ + F G A +LVATDVAAR Sbjct: 267 ALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLLVATDVAAR 326 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 GLD++ L VVNF L E +VHRIGR RAG G+AI+ P E I + Sbjct: 327 GLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRAIERHTGQR 386 Query: 364 LNWQTPPANSSIATLEAEMATLCID----GGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + + P +++ E + I G+ R + G+L G+ LD D+ A Sbjct: 387 IEYGQVPTAATLREKRLERTKVAIRETVAAGELEAFRA--MFGSLVGE--LDPTDVALAA 442 Query: 420 VHPAH 424 + AH Sbjct: 443 LKLAH 447 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/353 (38%), Positives = 209/353 (59%), Gaps = 15/353 (4%) Query: 8 NVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDA 67 ++ P L E G +P+QA +LP LAGKD+ +A+TG+GKT AF L ++Q + A Sbjct: 5 QLIAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTA 64 Query: 68 SLFQT--------QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + +A+V+ PTRELA QVA E + P +T+ GG +G Q ++L Sbjct: 65 PDGRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSG---PQLSTVTVYGGAAYGPQENAL 121 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGRL+DHL++G + L A+ V+DEAD ML +GF+DAI+ +++ PA+RQ Sbjct: 122 RRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQ 181 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEI---DSTDALPPIEQQFYETSSKGKIPLLQRLL 236 T+LFSAT + I ++ + R+P+ +++ + A +E + + + +L LL Sbjct: 182 TMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVG-RTRTRVLADLL 240 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +++ P +VF TK++ + + L G + +LHGDL Q R++ L F +G VLV Sbjct: 241 TVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLV 300 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 ATDVAARGLDI ++LVV + L DPE +VHR GRT RAG +G AI E Sbjct: 301 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRE 353 >UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=B8JG82_ANAD2 Length = 488 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/360 (42%), Positives = 202/360 (56%), Gaps = 18/360 (5%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN L L L G+ TP+QA A+P L G+DV A TG+GKTAAF L +++ Sbjct: 17 FADLN-LSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIE 75 Query: 64 QIDASLFQTQ-------------ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQ 110 ++ + ALVL PTRELA Q+AGEL R R + + + GG Sbjct: 76 RLGGGAPAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGR-HVRGALVIGGV 134 Query: 111 PFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDV 170 G Q +L+ +IVATPGRL+DHLQ+GT LD L LV+DEADRMLDMGF+ + + Sbjct: 135 GMGAQSAALRDH-EVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRI 193 Query: 171 IRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKI 229 + P RQTLLFSAT +A + RDP+ +E+ + L EQ+ + + K+ Sbjct: 194 LARVPKVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKL 253 Query: 230 PLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFAN 289 PLL LL S +VF TK+ V AL G +H D Q R L F + Sbjct: 254 PLLMALLE-EDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRD 312 Query: 290 GSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 G RVLVATD+AARG+D+ + VVNF+L PE +VHR+GRTAR SG A +F +PEE Sbjct: 313 GQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEE 372 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 139/354 (39%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS LN++ Q L GY T +Q A+P +L+G+D+ A+TG+GKTAAF + +LQ Sbjct: 3 FSELNIIERIQ-KALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPILQ 61 Query: 64 QIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 +I + + QAL+L PTRELA Q+ ++ A++L N T+ GG Q ++ Sbjct: 62 KIYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYL-NIISTTIYGGVSQKRQEEA 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ +++ATPGRLLD + + +SL + LV+DEAD+MLDMGF + ++ P R Sbjct: 121 LKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKR 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLS 237 QT+LFSAT P+ I +S ++ +P I + T L I Q Y + K LL L+ Sbjct: 181 QTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLIY 240 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 S +VF TK + L +G + +HG Q R++ L F G ++LVA Sbjct: 241 TLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILVA 300 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 TD+AARG+DI++L+ V+NFEL PE ++HRIGRT RAG SG+A+S P E + Sbjct: 301 TDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQK 354 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/378 (41%), Positives = 215/378 (56%), Gaps = 15/378 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAF--- 57 M FS+L L ++ L + GY TP+QAAA+P LAG D+ A+TG+GKTAAF Sbjct: 25 MNPFSSLG-LGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP 83 Query: 58 GLGLLQQIDAS-----LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 L LL++ S + + LVL PTRELADQ+ ++ + LP + L GG Sbjct: 84 SLELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNM 142 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q L+ I+VAT GRLLDH+++ ++L+ + +V+DEADRMLDMGF D I +++ Sbjct: 143 DKQTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 202 Query: 173 FAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEI---DSTDALPPIEQQFYETSSKGKI 229 P RQTLLFSAT+ I ++ P +E+ ++T+A +EQ + K Sbjct: 203 MLPKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNA--NVEQHIIAVDALKKR 260 Query: 230 PLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFAN 289 LL+RL+ + +VFC TK+ V L +A S+HGD Q+ R +TL F Sbjct: 261 SLLERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKE 320 Query: 290 GSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 G+ RVLVATDVAARGLDI L V+N+EL PE +VHRIGRT RAG G+AIS E Sbjct: 321 GTLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTE 380 Query: 350 AQRANIISDMLQIKLNWQ 367 + I ++ LN + Sbjct: 381 QKMFEAIKELTGSDLNVE 398 >UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family n=11 Tax=cellular organisms RepID=B3CMR4_WOLPP Length = 408 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 210/359 (58%), Gaps = 17/359 (4%) Query: 15 LTNLNELGYLTM-------------TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 ++N +E+G T+ TP+Q A+P L GKD+ A+TG+GKT AF + L Sbjct: 1 MSNFHEMGLPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPL 60 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + ++ ALV+ PTRELA QV E+R+L ++ L GG+P Q + LQ Sbjct: 61 VAKLMNEPSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQK 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P II+ TPGR++DH+++ T+ + LV+DE DRM DMGF I+++++ P RQTL Sbjct: 121 KPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTL 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEID--STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +FSAT P I ++ + P + +D +T ++ ++ Y + S+ L+ +L Sbjct: 181 MFSATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQL--CQ 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + S ++F TK+ + D L++ SAL++HGDL Q R++ + F G +++VATD Sbjct: 239 RKGSIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 VA+RGLDI ++ V+N+++ +VHRIGRTARAG G A+SF P++ +R ++D Sbjct: 299 VASRGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPALAD 357 >UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQV9_9SPHI Length = 535 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/358 (41%), Positives = 215/358 (60%), Gaps = 5/358 (1%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLF-QTQ 73 L ++ + YL TP+Q A+P ILAGKD+ A+TG+GKTAA+ + LL +I + T Sbjct: 13 LAGVDAMNYLKATPIQEMAIPKILAGKDLIASAQTGTGKTAAYLIPLLDKISHTAHDHTS 72 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQ--PFGMQRDSLQHAPHIIVATPG 131 L+L PTRELA Q+ ++ F+ I GG+ + QR +L+ II+ATPG Sbjct: 73 TLILVPTRELAKQIDEQVEGFGYFVQANSIAIYGGGKGDDWDKQRKALETGADIIIATPG 132 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RL+ H+Q G V D ++ LV+DEAD+MLDMGFSD I +++ PA RQTLLFSAT P I Sbjct: 133 RLIAHMQLGYVKFDKIDYLVLDEADKMLDMGFSDDIMNIVEKIPAKRQTLLFSATMPNKI 192 Query: 192 AAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL--SLHQPSSCVVFCN 249 S ++ DP I + + I+QQFY K+PLL L+ S S V+F + Sbjct: 193 REFSKKLLTDPEEIRLAVSKPAAGIDQQFYMAFDNQKLPLLAHLIKNSTKPVQSMVLFTS 252 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 K + ++ AL+++ A + DLEQ DR+ L F N + +LVATDV +RG+DI + Sbjct: 253 RKSEVNSIVRALSKLNYEARGISSDLEQDDREVVLRDFKNKAFPILVATDVLSRGIDIDN 312 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQ 367 L VVN+++ D E +VHRIGRTARA +G AI+F + ++ R I +++ +++ Q Sbjct: 313 LTHVVNYDIPRDAEDYVHRIGRTARAATTGTAITFVSDQDQNRIVSIEKLIEREVDKQ 370 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 206/370 (55%), Gaps = 16/370 (4%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQT--------Q 73 GY+ TP+QA +P ILAGKDV A+TG+GKTA F L LL + A + + Sbjct: 24 GYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLLHHLQAHASSSTSPARHPVR 83 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133 AL++ PTRELA Q+ +R+ ++L + + GG Q L++ I+VATPGRL Sbjct: 84 ALIMAPTRELAMQIDESVRKYGKYLA-LRTTVVFGGVNIEPQITELRNGVEILVATPGRL 142 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 LD ++ V+ LV+DEADRMLDMGF I V+ P+ RQ+L+FSAT+ + I Sbjct: 143 LDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLPSQRQSLMFSATFSDEIRK 202 Query: 194 ISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKK 252 ++ + + P+ IE+ + + + I + + K LL L+ +VF TK Sbjct: 203 LADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLLHLVKQQDLKQALVFVKTKH 262 Query: 253 DCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLEL 312 + L+ AL++HGD Q+ R Q L F +G ++LVATDVAARG+DI+ L Sbjct: 263 GASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQILVATDVAARGIDIEKLSH 322 Query: 313 VVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPAN 372 VVN+EL +PE +VHRIGRT RAG+ G AIS + E + I +L KL + Sbjct: 323 VVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETELLTSIEKLLNTKLEIE----- 377 Query: 373 SSIATLEAEM 382 IA +AE+ Sbjct: 378 -QIAGFDAEL 386 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/381 (36%), Positives = 217/381 (56%), Gaps = 3/381 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F L L + L + +LG+ + VQ A+P +L D+ A+TG+GKTAAFG Sbjct: 1 MNKFEQLG-LNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGF 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q+IDA TQALVL PTREL Q+ EL+ +++ ++ + GG Q + Sbjct: 60 PLIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREI 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + IIVATPGR+ D + +G V++ ++ ++DEAD ML+MGF + I ++ P + Sbjct: 120 KRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT P+ +A I+ + +P+ I + + ++ + +FY +++ + L+RL Sbjct: 180 TWLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + VVFC TK+D QAV + L E G SA +LHGDL Q RD + F ++LVAT Sbjct: 240 NPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ ++ VVN++L + E + HR GRT RAG G +I E ++ + I Sbjct: 300 DVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIER 359 Query: 359 MLQIKLNWQTPPANSSIATLE 379 +++ K + P+ I ++ Sbjct: 360 IIKQKFEEKAIPSGIEICEIQ 380 >UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMZ1_9GAMM Length = 417 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/361 (39%), Positives = 210/361 (58%), Gaps = 6/361 (1%) Query: 16 TNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDA----SLFQ 71 + L+ LGY T +Q A+PA+L G D+ A+TGSGKTA F L LL+++ + Sbjct: 14 STLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSIPAPGNNL 73 Query: 72 TQALVLCPTRELADQVAGELRRLARFLP-NTKILTLCGGQPFGMQRDSLQHAPHIIVATP 130 T ALVL PTRELA QV+ + R + P + + + GG Q SL I+VATP Sbjct: 74 THALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQSLSKGCDIVVATP 133 Query: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 GRLLD ++K + L L LV+DEADRMLD+GF+D +DD++ P + QTLLFSAT+P+ Sbjct: 134 GRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLLFSATFPDK 193 Query: 191 IAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 + ++ + R+P+ I + LP + Q+ E + LL+ L+ + ++F Sbjct: 194 VKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTMLLKHLIKQEKWQQLLIFVG 253 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 +K+ + L G + +LHGDL Q++R L F+ G ++L+ATD+AARG+DI S Sbjct: 254 SKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLAARGIDIPS 313 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTP 369 L V+N++L +VHR GRTARAG +GLAISF E +I +++K+ + Sbjct: 314 LPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHFKLIEKRIRMKIPREQI 373 Query: 370 P 370 P Sbjct: 374 P 374 >UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LPU2_DESBD Length = 741 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 215/398 (54%), Gaps = 7/398 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 AFS + LP L + + PVQ +P +L G+DV VQ++TGSGKT AF L +L Sbjct: 24 AFSMAD-LPQTLQAAATRLNWAELMPVQVQTIPYMLGGQDVMVQSQTGSGKTGAFLLPIL 82 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +I+ L QALVL PTRELA QV + L R K L++ GG + Q L+ Sbjct: 83 DRIETGLGAPQALVLVPTRELAVQVTRDAEELGREA-GIKPLSIYGGVGYKGQIQGLEDG 141 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +I+ TPGR+LDHL KG ++LD L LV DEADRML MGF + + R+ P Q+ + Sbjct: 142 AQLIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSMGFYPDMKQLQRYLPRGLQSAM 201 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT+P + ++ + +DP+ + + + + + Y+ + K +L +++ P Sbjct: 202 FSATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVVYKVPAMQKSRILVKIIEQENP 261 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +S ++FCNTK D V L G + DL Q R++ L + + LVATDVA Sbjct: 262 ASAIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAREEVLEKLRLNKLKFLVATDVA 321 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+DI L V ++ D E +VHR GRT RAG +G+AISF + E I+ Sbjct: 322 ARGIDIHELSHVFQYQPPQDHEAYVHRTGRTGRAGAAGVAISFVSGMEEIELEQIAKKFS 381 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 I + Q PA+ + TL ++ A ++ A++R D Sbjct: 382 IPMVEQPLPADEELETLISQRAVFLLE----ARLRKAD 415 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 206/365 (56%), Gaps = 14/365 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L ++ P + + GY TP+Q +P L GKDV QA+TG+GKTAAF + L Sbjct: 88 FADLKLMRPL-MDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLN 146 Query: 64 QIDASLFQTQ-ALVLCPTRELADQVAGELRRLA---RFLPNTKILTLCGGQPFGMQR--D 117 + + +V+ PTRELA Q+A E +LA RF + + + GG GMQR D Sbjct: 147 RWRPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKRF----RCVPVYGGT--GMQRQLD 200 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L ++V TPGR+LDHLQ+G++SL + V+DEADRMLD+GF D I+ +++ P+ Sbjct: 201 GLTRGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSE 260 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLL 236 RQTLL SAT P++I + R RDP+ + + + I Q ++ K LL+R++ Sbjct: 261 RQTLLMSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVV 320 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +P C++F K+ + L A +HGDL Q R++ + F + L+ Sbjct: 321 EREKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLI 380 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDV +RG+D+ L V+N++L D E +VHRIGRT R G G+AISF PE+ + I Sbjct: 381 ATDVMSRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNI 440 Query: 357 SDMLQ 361 M+ Sbjct: 441 EMMIN 445 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 213/364 (58%), Gaps = 12/364 (3%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ--- 71 L+ + + GY TPVQ ++P IL G+D+ A+TG+GKTAAF L +L ++ +L + Sbjct: 74 LSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHKL--TLLKRPR 131 Query: 72 TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPG 131 +ALVL PTRELA Q+ ++ R+L + + + L GG G Q +L+ I+VATPG Sbjct: 132 VRALVLTPTRELAIQIFDNFKKYGRYL-HLRTVCLYGGAKRGPQIGALRRGADILVATPG 190 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RLLD + + V L ++ LV+DEADRMLDMGF + ++ P+ RQTL+FSAT + + Sbjct: 191 RLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLMFSATMEKEV 250 Query: 192 AAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 ++ R+ +DP+ +++ +A +EQ+ +S + K ++ LL+ S +VF T Sbjct: 251 RQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVESAIVFTRT 310 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 K + L G ++++HGD Q R L RF +G RV+VATDVAARGLDI L Sbjct: 311 KHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVAARGLDIPKL 370 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML-----QIKLN 365 V N+++ + ++HRIGRT RAG SG+AI+ C E + ++L +++ Sbjct: 371 SHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEELLEKPIPELQTQ 430 Query: 366 WQTP 369 W P Sbjct: 431 WSLP 434 >UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=Bacteria RepID=C7PCT4_CHIPD Length = 444 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 134/353 (37%), Positives = 209/353 (59%), Gaps = 9/353 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI-----DASL 69 L ++ +GY T TPVQ +P I+AGKD+ A+TG+GKTAAF L +L ++ DA Sbjct: 13 LDGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPILHRLITEPHDAR- 71 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCG--GQPFGMQRDSLQHAPHIIV 127 + +L++ PTRELA Q+A L ++ F + I G G F ++ +L I++ Sbjct: 72 -KINSLIIVPTRELAVQIAQTLEGMSYFTSVSSIAVYGGSNGALFAAEKKALTSGVDIVI 130 Query: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187 TPGR++ HL G V LDA+ LV+DEADRMLDMGFSD I + P RQ LLFSAT Sbjct: 131 CTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKERQNLLFSATM 190 Query: 188 PEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247 P+ I ++ ++ P I I + I Q+ + + K L+++LL+ + ++F Sbjct: 191 PDKIRKLALKILHQPEEINIAISKPPEKIVQEAFVVFEEQKTGLIKQLLARKEFGCIIIF 250 Query: 248 CNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI 307 C+ K++ + + L + S +H DLEQ R+Q L+ F N ++LVATD+ +RG+DI Sbjct: 251 CSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATDILSRGIDI 310 Query: 308 KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 + ++LV+N+++ D E ++HRIGRTARA G A + + +E ++ I ++L Sbjct: 311 EDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIEEVL 363 >UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pulmonis RepID=Q98RE0_MYCPU Length = 480 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 199/348 (57%), Gaps = 3/348 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ +N+ L +L+E+G+ T +Q A LP GKD+ QA+TG+GKTAAF + +L Sbjct: 3 FTQMNIKSEI-LKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILS 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +D S+ + Q LV+ PTRELA+Q+ +L L ++ +KI + GG + Q+ +L Sbjct: 62 NLDCSINRIQHLVIAPTRELANQIYDQLNILGKYTC-SKIALILGGVSYEKQKAALNSGV 120 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +I+VATPGRL D L + + L + T +DEAD +L +GF + I ++ P RQ F Sbjct: 121 NIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFF 180 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 +AT+ E +S + + I + S + I+Q F S + K+ L + L +P+ Sbjct: 181 TATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFLDFKKPT 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + V+F TK+ + AL E+G SA+ + GD+ Q+DR L RF + ++VATDV A Sbjct: 241 ASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 RG+D+ ++LV NF+L + E + HRIGRT R G AISF E Sbjct: 301 RGIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAISFVKKPEV 348 >UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales RepID=A7K1S7_VIBSE Length = 416 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/366 (37%), Positives = 210/366 (57%), Gaps = 9/366 (2%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---D 66 L P + L L Y TP+Q+ +P IL GKD+ A TGSGKTAAF L +LQ+I D Sbjct: 15 LIPTLVERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPILQKIVQQD 74 Query: 67 ASLFQ----TQALVLCPTRELADQVAGELRRLARFLPNT-KILTLCGGQPFGMQRDSLQH 121 + + L+L PTRELA QVA ++ + L + K + + GG Q +L+ Sbjct: 75 ETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRG 134 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 IIVATPGRLLD + + LD + TLV+DEADRML +GF++ ++ ++ P +QTL Sbjct: 135 GCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTL 194 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 LFSAT+P+ + +S + RDP+ +++ S +A + Q+ + + K +L L+ HQ Sbjct: 195 LFSATFPDKVTTLSQHLLRDPVEVQLQSAEA-STLVQRVFSVNKGEKTAVLAHLIKQHQW 253 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++F N K C + L++ G +A HGD Q R + L F +G +VL+ATD+A Sbjct: 254 RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIATDIA 313 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDI+ L +V+NF+L P ++HRIGR+ RAG GL +S ++ +I + Sbjct: 314 ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFKVIEKKNK 373 Query: 362 IKLNWQ 367 +L + Sbjct: 374 FQLERE 379 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 224/377 (59%), Gaps = 10/377 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+TL L + + +++LG+ + +Q ++P L+G D+ QA+TG+GKTAA+ L ++ Sbjct: 6 FATLG-LKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIIT 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQH 121 ++ + ++L+L PTRELA QV E++RL+++ KI+TL GG Q +L+ Sbjct: 65 KMSDNR-GIKSLILAPTRELAVQVNEEIQRLSKY---EKIVTLAVYGGDSIDRQIRALRK 120 Query: 122 AP-HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I+V TPGR+LD +++ + L+++ LV+DEAD ML+MGF D I +++ P+ RQT Sbjct: 121 GDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQT 180 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P+ IA ++ + + D + I S+ + IEQ ++ ++K ++ L RLL L Sbjct: 181 LLFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDL 240 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 PSS ++FC TK+ + L G +HGD+ Q R TL +F G+ +L+AT Sbjct: 241 DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIAT 300 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D++ + V N++L D E +VHRIGRT RA SG A S P++ I + Sbjct: 301 DVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQN 360 Query: 359 MLQIKLNWQTPPANSSI 375 + + + + P I Sbjct: 361 VTKSSITQKPVPTAEEI 377 >UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminococcaceae RepID=C7H231_9FIRM Length = 395 Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 199/349 (57%), Gaps = 4/349 (1%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77 + +G+ MT +Q +P +LAG+DV +A TG+GKT AFG+ + + ID QA+++ Sbjct: 16 VERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVAEHIDPEKKYPQAVIM 75 Query: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL 137 PTRELA Q+A EL L F+P ++ + GG Q L I+VATPGRL+DH Sbjct: 76 APTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAEGCQIVVATPGRLMDHY 135 Query: 138 QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGR 197 + ++ L + +V+DEAD ML+MGF + +I A + +FSAT + I Sbjct: 136 KHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSLSMFSATISREVMDIGWL 195 Query: 198 VQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQA 256 Q + I + ++ P I Q ETS + K+ L +++ +VFC+TK + Sbjct: 196 YQNNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRVMVFCDTKFNTAT 255 Query: 257 VCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNF 316 + + L +G S LHGDL Q++R+Q + F +G +LVATDVAARG+D+ ++ V+N+ Sbjct: 256 LANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAILVATDVAARGIDVSDVDAVINY 315 Query: 317 ELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLN 365 ++ D E + HRIGRT RA G++ F PEE +R + ++L++ N Sbjct: 316 DVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKR---VQELLRLTRN 361 >UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudomonadaceae RepID=A6V0P4_PSEA7 Length = 529 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 148/382 (38%), Positives = 218/382 (57%), Gaps = 13/382 (3%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F N L P+ + +++LG+ TP+QA L L G+D +A+TG+GKTAAF + + Sbjct: 141 TRFHDFN-LAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISI 199 Query: 62 LQQI-------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 + Q+ + + + +AL++ PTREL Q+A + L ++ ++T GG F Sbjct: 200 ITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDK 258 Query: 115 QRDSLQ-HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF 173 Q L+ I+VATPGRLLD Q+G V LD + +V+DEADRMLDMGF + +IR Sbjct: 259 QLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQ 318 Query: 174 AP--ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIP 230 P RQTLLFSAT+ + + ++ + DP +EI+ + A +EQ Y + K Sbjct: 319 TPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 378 Query: 231 LLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 LL L++ + +VF N K + + + + L + G SA + GD+ Q R +TL F G Sbjct: 379 LLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREG 438 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 RVLVATDVA RG+ I + V+NF L DP+ +VHRIGRT RAG SG +ISF ++A Sbjct: 439 KIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDA 498 Query: 351 QRANIISDMLQIKLNWQTPPAN 372 I ++L K+ + PPA Sbjct: 499 FALPPIEELLGRKITCEMPPAE 520 >UniRef50_A2U1Q9 DEAD/DEAH box helicase n=6 Tax=Bacteria RepID=A2U1Q9_9FLAO Length = 373 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 218/374 (58%), Gaps = 8/374 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M+ F+ L + + ++ E+G T +Q A+P +L D A+TG+GKTAAFGL Sbjct: 1 MSTFAGLGIRKDY-IKSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL-TLCGGQPFGMQRDS 118 +L IDA+ QAL+L PTREL Q+ +L + +++ + L + GG+ Q ++ Sbjct: 60 PVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNN 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS- 177 L+ HI++ATPGRL+D +++G V + + T+++DEAD ML MGF ++ +++F S Sbjct: 120 LKRTTHIVIATPGRLIDLIERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKSD 179 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLA--IEIDSTDALPP-IEQQFYETSSKGKIPLLQR 234 R+T LFSAT P+ I I + D A IEI+ + I QF +T+ K K+ + Sbjct: 180 RKTWLFSATMPDEIKRIV-KTYMDANAPRIEINKNTLVNANIRHQFAKTTLKEKVADIVT 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L Q ++FC TK Q + L + G SA +L GD++Q++RD+ + F N S + Sbjct: 239 FLEKRQAQRGIIFCRTKAGAQNLAKQLVDEGFSAAALEGDMQQKERDKVMRAFKNESLQY 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 L++TDV+ARG+D++ LE V++ +L E + HR GRTARAG +G +++F P E ++ + Sbjct: 299 LISTDVSARGIDVRELEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPSELEKIH 358 Query: 355 IISDMLQIKLNWQT 368 + L IK T Sbjct: 359 QLQKELNIKFTEVT 372 >UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aquificaceae RepID=B4U778_HYDS0 Length = 364 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 137/355 (38%), Positives = 208/355 (58%), Gaps = 9/355 (2%) Query: 1 MTAFSTLNVLPPAQLTN-LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 M+ FS L++ +L L + GY TP+Q A+P L G D+ QA TG+GKT AF + Sbjct: 1 MSLFSKLSL----ELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAI 56 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++++ +ALVL PTRELA QV ++ L ++ GG D L Sbjct: 57 PIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKY-KRLSSYVFYGGTSVKQNLDIL 115 Query: 120 QHAP-HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 Q+ I++ TPGR+ D + + ++L + LV+DE D+MLDMGF + I+ +I F P R Sbjct: 116 QNKNVDILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKER 175 Query: 179 QTLLFSATWPEAIAAISGR-VQRDPLAIEIDSTDALPPIEQQFYETSSKG-KIPLLQRLL 236 T +FSAT P I ++ R ++ D +++ S + P IE++ + SS G KI L ++ Sbjct: 176 TTYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHII 235 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 H ++F TKKD + + L + G A +LHGDL QR R++ L F +G+ +L+ Sbjct: 236 DTHPMEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILI 295 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 ATDVAARGLDIK + +V+N+ + DPE+++HRIGRT R G SG A S PE+++ Sbjct: 296 ATDVAARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSK 350 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 137/347 (39%), Positives = 206/347 (59%), Gaps = 10/347 (2%) Query: 9 VLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS 68 ++ P L E G +P+QA +LP LAG+D+ +A+TG+GKT AF L ++Q+++ S Sbjct: 6 LIAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPS 65 Query: 69 LFQTQ---ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHI 125 + + A+V+ PTRELA QVA E + L +T+ GG + Q ++L+ + Sbjct: 66 RERARPPRAIVVAPTRELAKQVAEEFSKSGVGLTT---VTVYGGASYAPQENALRRGVDV 122 Query: 126 IVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSA 185 +V TPGRL+DHL++G + L A+ V+DEAD ML +GF+DAI+ +++ P SRQT+LFSA Sbjct: 123 VVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSA 182 Query: 186 TWPEAIAAISGRVQRDPLAIEI---DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 T I +S R+P+ +++ + A +E + + +L LL+++ P Sbjct: 183 TLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEH-LKVRVGRSRTRVLADLLTIYNPE 241 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VF TK++ + + L G A +LHGDL Q R++ L F +G VLVATDVAA Sbjct: 242 KAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAA 301 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 RGLDI ++LVV + L DPE +VHR GRT RAG +G AI E Sbjct: 302 RGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRE 348 >UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQM8_9SPIO Length = 646 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/337 (40%), Positives = 204/337 (60%), Gaps = 3/337 (0%) Query: 22 GYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80 G+ TP+Q A+P +L G +V +A+TG+GKTAA+GL L+Q++ + +ALVL PT Sbjct: 37 GFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGLPLVQELREPREKPRALVLVPT 96 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELA QVA E+ + +I T+ GG Q +L+ I+ TPGR++DHL++G Sbjct: 97 RELALQVASEIESFKEGT-HPRITTVYGGASIVEQLRNLKRGCEIVAGTPGRVIDHLERG 155 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 +++LD++ ++DEAD ML+MGF + I+ + + A + L+FSAT P+ I I+ Sbjct: 156 SLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSRVLMFSATMPKQILKIAADFMG 215 Query: 201 DPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 + +E ++++ LP EQ F+ + K L RL+ + +VFC TK D AV Sbjct: 216 EYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDTAENFYGLVFCQTKVDADAVAK 275 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 L+E A +LHGD+ Q R++ L RF G R+LVATDVAARG+DI+ + VVN+ + Sbjct: 276 ELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATDVAARGIDIEGITHVVNYSIP 335 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 +D + HRIGRT RAG G A+SF P E +R + + Sbjct: 336 YDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYL 372 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 138/393 (35%), Positives = 220/393 (55%), Gaps = 28/393 (7%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGLL 62 F LN+ + + L+E G+ T +Q A+P +L + DV QA+TG+GKT AFG+ ++ Sbjct: 3 FRDLNI-SESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPII 61 Query: 63 QQIDASLFQT--------QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q+I + + +A++L PTRELA QV E+ + + ++ T+ GGQ Sbjct: 62 QKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKG-NKLRLCTVYGGQSIEK 120 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q + L++ I++ TPGR++DHL + T+ L+ ++ LV+DEAD ML++GF D +++++ Sbjct: 121 QINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKC 180 Query: 175 PASRQTLLFSATWPEAIAAI---------SGRVQRDPLAIEIDSTDALPPIEQQFYETSS 225 + LLFSAT P++I + + RV+ L E+ EQ +YE Sbjct: 181 KEDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTEL--------TEQIYYEVKE 232 Query: 226 KGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLV 285 K LL+R++ +VFC TK D + LN+ S+ +LHGD+ Q+ R+ L Sbjct: 233 HDKFELLRRIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALS 292 Query: 286 RFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 RF + +++ATDVAARG+DI L V+N+++ +PE +VHRIGRT RAGN G AI+F Sbjct: 293 RFKSHKIDIMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFV 352 Query: 346 APEEAQRANIISDMLQIKLNWQTPPANSSIATL 378 P E +R I + + + P + I L Sbjct: 353 EPREFRRFKYIMKISKSDAKKEKIPDVTEIVEL 385 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 211/370 (57%), Gaps = 5/370 (1%) Query: 3 AFSTLNVLPPAQLT-NLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 +F + P Q+T + +LGY T TP+Q +P L G+DV A+TG+GKTAAF L + Sbjct: 2 SFDSFRFHP--QITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPI 59 Query: 62 LQQI-DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LQ++ + +A+++ PTRELA+Q+ G + L ++ + +TL GG + Q L+ Sbjct: 60 LQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYT-GLRSVTLYGGVGYQGQIQRLR 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I V PGRLLDHL++GT++L+ L+ L++DEAD+M DMGF + ++R APA RQT Sbjct: 119 RGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 +LFSAT P+AI A++ R+P I+I + + + Y + K LL LL Sbjct: 179 MLFSATMPDAIRALAREALREPQTIQIGRSAPVSTVTHAIYPVAEHLKTALLIELLRHTD 238 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S ++F TK Q + D L +G A +L G++ Q R L F +G ++LVATD+ Sbjct: 239 TGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDI 298 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ + V+N+++ E + HRIGRT RA +G A + + I ++ Sbjct: 299 AARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLI 358 Query: 361 QIKLNWQTPP 370 L +T P Sbjct: 359 GEPLKRETVP 368 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/354 (40%), Positives = 204/354 (57%), Gaps = 14/354 (3%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--------DASLFQTQ 73 GY TP+QAAA+P LAG D+ A+TG+GKTAAF L L+++ ++ + Sbjct: 22 GYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVR 81 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133 LVL PTRELADQ+ ++ + LP + L GG Q L+ I+VAT GRL Sbjct: 82 MLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQTADLRAGCEIVVATVGRL 140 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 LDH+++ + L+ + +V+DEADRMLDMGF D I +++ P RQTLLFSAT+ I Sbjct: 141 LDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATFSAPIRK 200 Query: 194 ISGRVQRDPLAIEI---DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 ++ P +E+ ++T+A +EQ + K LL+RL+ + +VFC T Sbjct: 201 LAQDFMNAPETVEVAAQNTTNA--NVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVFCKT 258 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 K+ V L SA ++HGD Q+ R +TL F +G+ RVLVATD+AARGLDI L Sbjct: 259 KQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARGLDIAEL 318 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 V+N+E+ PE +VHRIGRT RAG G+AIS E + I ++ KL Sbjct: 319 PFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372 >UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12UP5_METBU Length = 522 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 139/346 (40%), Positives = 201/346 (58%), Gaps = 4/346 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M +F L + A L ++ + + T +Q A+P IL GKD+ A TGSGKT AFG G Sbjct: 1 MESFKKLGI-EDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCG 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+I+ +ALVL PTRELA+QV L+ +R ++ + GG Q L+ Sbjct: 60 IIQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSRH-KQLRVAPIYGGVAINPQIRQLE 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 A ++VATPGRLLDH+++GT+ L + LV+DEADRMLDMGF D ++++I P+ RQT Sbjct: 118 RAD-VVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQT 176 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 ++FSAT + I +S + +P + + ++Q + + K K LL LL + Sbjct: 177 MMFSATVSKDIQYLSSKYMNNPSKVFAKAYVDSDKLKQVYIDVPKKMKFSLLVHLLKSEK 236 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VFCNT+ + V L + A+++HG Q R TL +F + +A LV TDV Sbjct: 237 SGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALVCTDV 296 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 AARGLDI + V NF++ DP +VHRIGRTARAG G I+ A Sbjct: 297 AARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVVA 342 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/351 (41%), Positives = 206/351 (58%), Gaps = 5/351 (1%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQ 71 L + GY T +QA A+P ILAG+D+ +A+TG+GKT AFGL ++Q + + Sbjct: 13 LKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQILGLTRGNGHH 72 Query: 72 TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPG 131 +AL+L PTRELA QV ++ AR + + + GG Q L+ I+VATPG Sbjct: 73 PRALILTPTRELALQVGESIKAYARKV-SLRCTVAFGGVRIEPQIARLERGIDILVATPG 131 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 RLLD + +SL ++ LV DEADRMLD+GFS I+ ++ P R+T+LFSAT+ I Sbjct: 132 RLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRTMLFSATYTPQI 191 Query: 192 AAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 A++ ++ P IEI T A ++Q+ + + K+PLL L+ + +VF T Sbjct: 192 KALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEKQKQDRILVFART 251 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 + + D L G S +LHG Q R +TL F +G +LVATDVAARGLDI +L Sbjct: 252 RTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATDVAARGLDISNL 311 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 LVVN+++ PE +VHRIGRT RAG SG+A+S +PEE I D+L+ Sbjct: 312 PLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIEDLLR 362 >UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZLE2_GLUDA Length = 390 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 156/357 (43%), Positives = 202/357 (56%), Gaps = 12/357 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 AF TL L P + N+ GY T +P+QA A+P I G+DV A+TG+GKTAAF L ++ Sbjct: 15 AFDTLG-LDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVI 73 Query: 63 QQI---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFG 113 ++ +AL+L PTRELA Q AG +R R T L + GG P Sbjct: 74 HRLLTGAGGAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAI-GGAPKD 132 Query: 114 MQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF 173 Q +L I+VATPGRLLDHL T++LD LV+DEADRMLD+GF + + + Sbjct: 133 RQARALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAAR 192 Query: 174 APASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLL 232 P QTLLFSAT AI+A+ ++ PL I A PP I QQ T + K L Sbjct: 193 LPVRHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASL 252 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 +L +VF TK+ A+ LN G +A +LHGD Q RD+TL F G Sbjct: 253 LAVLRREAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRL 312 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 VLVATDV ARG+D++ + LVVNF++ PE ++HRIGRTARAG G A+S C P E Sbjct: 313 LVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAE 369 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/352 (41%), Positives = 197/352 (55%), Gaps = 8/352 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F++L + P L + GY +P+Q A+PA+L GKDV A+TG+GKTA F L +L Sbjct: 2 SFTSLGLSEPI-LKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 63 QQIDAS----LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + Q +ALVL PTRELA QV G + + LP T + GG Q Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVF-GGVKINPQMQK 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ ++VATPGRLLD + V D L LV+DEADRMLDMGF I ++ F P R Sbjct: 120 LRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKR 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLS 237 Q LLFSAT+ + I +++ + +P+ I + ++ P +EQ Y K K P+L +L+ Sbjct: 180 QNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIK 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK + L E ++ +HG+ Q R + L F G RVLVA Sbjct: 240 DNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISF-CAPE 348 TD+AARG+DI L VVNF+L E +VHRIGRT RAG G AIS CA E Sbjct: 300 TDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADE 351 >UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Propionibacterium acnes RepID=Q6A841_PROAC Length = 561 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 215/361 (59%), Gaps = 14/361 (3%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID----------A 67 L +G ++ P+QA ++P + G D+ QA+TG+GKT AFG+ +L +I Sbjct: 68 LEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGWEELT 127 Query: 68 SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIV 127 + + QALV+CPTRELA QV+ ++ A + ++LT+ GG + Q D+L+ ++V Sbjct: 128 TKGKPQALVMCPTRELALQVSKDISTAAS-VRGARVLTVYGGVGYESQIDALKAGVDVVV 186 Query: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187 TPGRLLD Q+ + L + +V+DEAD MLD+GF ++++I PASRQT+LFSAT Sbjct: 187 GTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFSATM 246 Query: 188 PEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQF-YETSSKGKIPLLQRLLSLHQPSSC 244 P I A++ P+ + + D A P QQF Y+ KI ++ R+L + Sbjct: 247 PAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKV 306 Query: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304 ++FC TK+ CQ + D L++ G ++HGDL Q R++ L +F +G A +LVATDVAARG Sbjct: 307 IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAARG 366 Query: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 +D+ + V+N E D + +VHRIGRT RAG G+A++ + R +I+ L ++L Sbjct: 367 IDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRWKLINKALNLEL 426 Query: 365 N 365 + Sbjct: 427 S 427 >UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Acidaminococcus RepID=D2RII4_ACIFE Length = 417 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 205/367 (55%), Gaps = 3/367 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L V + L+ G TPVQ A+PA+L G+DV +A+TG GKT +F + L Sbjct: 4 GFAQLKV-DETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIPLF 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++D QAL+L PTRELA Q AGE+R+L + LT+ GG+ F ++ + H Sbjct: 63 DKVDPQKEFVQALILSPTRELAQQTAGEIRKLEGDT-GIRTLTVSGGRDFEEEKRKIGHR 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGRLLDHL+KG SL + LV+DE D ML GF + I+ ++ P QT++ Sbjct: 122 AQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMM 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQP 241 SAT E + + ++ +PL I+I ++ I Q + S K L L+ + P Sbjct: 182 CSATLDEEVRKLGRQLTTNPLVIDIAPKESTASTIHQICIKVSEDHKADALASLIRRYNP 241 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFC +K+ + D L G + LHGD+ Q R Q + F ++LVA+D+A Sbjct: 242 FLMLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVASDIA 301 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + VVN+++ DP+ +VHRIGRT RAG+ G AI+F +E + + L Sbjct: 302 ARGLDVEGITQVVNYDIPHDPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEKKLD 361 Query: 362 IKLNWQT 368 I L Q Sbjct: 362 ITLERQN 368 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 215/369 (58%), Gaps = 13/369 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + L+ L + GY T TP+QA A+P +L D+ A+TG+GKTAAF L Sbjct: 1 MTTFKDLG-LSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALP 59 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L I ++ + LVL PTRELA Q+A + ++ L +I T+ GG +G Q Sbjct: 60 ILHHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGL-GLQIATIFGGVKYGPQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +LQ I+VATPGRL+DH+++ T+ L A+ LV+DEAD+MLDMGF I V P Sbjct: 119 YKALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEI--DSTDALPPIEQQFYETSSKGKIPLLQ 233 A RQ L FSAT P+ IA ++ + +P +EI ++T A + QQ + K LL Sbjct: 179 AQRQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTA-ERVTQQVIFIEQQRKRALLS 237 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L + + + ++F TK+ V L G A ++HGD Q R++ L F G R Sbjct: 238 ELYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVR 297 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 LVATD+AARG+D+ ++ V+N+EL + E +VHRIGRTARAG G +I+ A +E + Sbjct: 298 ALVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERK-- 355 Query: 354 NIISDMLQI 362 ++ D+ +I Sbjct: 356 -LLKDIERI 363 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 193/336 (57%), Gaps = 8/336 (2%) Query: 21 LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI------DASLFQTQA 74 + Y +P+Q A+PAI++G+D+ AKTG+GKTAAF L +LQ++ + +A Sbjct: 1 MKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKA 60 Query: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134 L+L PTRELA Q+ + + N K + GG G Q + +++ATPGRL+ Sbjct: 61 LILAPTRELAIQINETFEAMNPQV-NLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLI 119 Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194 D +G V L + LV+DEADRMLDMGF I ++RF P QT+LFSAT P+ I + Sbjct: 120 DLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHL 179 Query: 195 SGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253 + DPL I I S + + I Q Y K LL +LL Q + +VF TK++ Sbjct: 180 VSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRTKRN 239 Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313 +C L + + +HGD Q R + L F N RVLVA+D+AARG+DI L V Sbjct: 240 VDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHV 299 Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 +NF+L E +VHRIGRTARAG SG AI+FC+ +E Sbjct: 300 INFDLPDQAENYVHRIGRTARAGASGEAITFCSFQE 335 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 148/360 (41%), Positives = 207/360 (57%), Gaps = 9/360 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F++L ++ P L NL +L Y T TPVQ A+PA+L GKDV A+TG+GKTA F L LL Sbjct: 36 SFASLGLIDPL-LRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 94 Query: 63 QQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q++ S + + LVL PTRELA+QV + L + + L GG Q Sbjct: 95 QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGL-DLRFLAAYGGVSINPQMM 153 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ ++VATPGRLLD ++ V D + TLV+DEADRMLD+GF+ ++ V P Sbjct: 154 KLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQ 213 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLL 236 RQTLLFSAT+ + I ++ + R P+ I + + I+Q + K L L+ Sbjct: 214 RQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFMHLV 273 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + +VF T+ + + L+E G + ++HGD Q R + L RF G ++LV Sbjct: 274 AENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLV 333 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISF-CAPEEAQRANI 355 ATDVAARGLDI L LV+N +L + +VHRIGRT RAG SG+A+S CA E Q A I Sbjct: 334 ATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAI 393 >UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C4R1_HYPNA Length = 708 Score = 240 bits (613), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 212/375 (56%), Gaps = 9/375 (2%) Query: 9 VLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--- 65 LP A ++E GY T+T VQAAA L G+D+ V A+TGSGKT AFGL + ++ Sbjct: 6 TLPAALRAAIHERGYETLTEVQAAATAPELEGRDLLVSARTGSGKTVAFGLAIANELLGG 65 Query: 66 -DASLFQTQ---ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 D L + L++ PTRELA QVA ELR L N +I T GG +R +L+ Sbjct: 66 EDTFLIRAATPLGLIIAPTRELALQVARELRWLYANT-NAEIATCVGGMDMRDERRALER 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HI+V TPGRL+DH+ +G+ A+ +V+DEAD MLD+GF + ++ ++ P R+TL Sbjct: 125 GAHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKERRTL 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 +FSAT P+ IAA++ R Q++ L I DS T A I + + + + ++ Sbjct: 185 MFSATVPKGIAALATRYQKNGLRITTDSDTTAHADIAYEALVVAPGDEENAIVNIVRHSD 244 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VFC+T+ + L G S ++L G+ Q++R L +G ARV +ATDV Sbjct: 245 TESAIVFCSTRASVNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCIATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD+ L+LV++ +L DP +HR GRT RAG G++ AP+ +R + Sbjct: 305 AARGLDLPKLDLVIHADLPRDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVERLLQDA 364 Query: 361 QIKLNWQTPPANSSI 375 +++ W PP+ + Sbjct: 365 KVEARWGRPPSADEV 379 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 150/386 (38%), Positives = 215/386 (55%), Gaps = 9/386 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F +L L P L + E GY TP+Q A+PA+L G+D+ A+TG+GKTA F L LL Sbjct: 2 SFDSLG-LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 63 QQI------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 Q + +AL+L PTRELA Q+ +R +++L N + L + GG Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQM 119 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ ++VATPGRLLD + V LD + LV+DEADRMLDMGF I V+ PA Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRL 235 RQ LLFSAT+ + I A++ ++ +PL IE+ + A + Q + K K LL + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + +VF TK + + LN+ G + ++HG+ Q R + L F +G RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARGLDI+ L VVN+EL PE +VHRIGRT RA +G A+S +E + Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAE 381 I +L+ ++ P +++AE Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKAE 385 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 209/369 (56%), Gaps = 8/369 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 TAF+ + + + NL LG T +P+Q ++P I+AG+D+ A+TG+GKTAAFGL + Sbjct: 67 TAFTRMGIDARVAI-NLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPM 125 Query: 62 LQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L ++ +AL+L PTRELA Q+A + A P + + GG +Q Sbjct: 126 LTRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTP-IRQFRVVGGASINVQV 184 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ +++ATPGRL+D +++G + L LV+DEAD+MLD+GF A+ + + P Sbjct: 185 QRLERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPR 244 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRL 235 RQTLLFSAT P+ + ++ DPL + ++ A I+Q + + K LL Sbjct: 245 ERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEY 304 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 LS H +VF TK + +C L++ G ++HG+ Q R++ L F G +VL Sbjct: 305 LSKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVL 364 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI + V N++L PE +VHRIGRTARAG G AI+FC+P E Sbjct: 365 VATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRA 424 Query: 356 ISDMLQIKL 364 I ++ K+ Sbjct: 425 IEKAMKAKI 433 >UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=Actinomycetales RepID=A0JYP4_ARTS2 Length = 585 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 159/430 (36%), Positives = 230/430 (53%), Gaps = 21/430 (4%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ NV + +L + G P+QA LP LAG D+ QAKTG+GKT FG+ L Sbjct: 38 SFADYNVRADI-VESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPAL 96 Query: 63 QQI---DASLFQT-------QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 Q++ D F QALV+ PTRELA QVA +L AR N +I T+ GG+ + Sbjct: 97 QRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKR-NARIATIYGGRAY 155 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q DSLQ I+V TPGRL+D ++ +SL + +++DEAD MLD+GF ++ +I Sbjct: 156 EPQVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIA 215 Query: 173 FAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD----ALPPIEQQFYETSSKGK 228 PA RQTLLFSAT P + A++ R P I D I Q Y S K Sbjct: 216 GTPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDK 275 Query: 229 IPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFA 288 I ++ R+L ++F TK+ V + L + G +A ++HGDL Q R+Q L F Sbjct: 276 IEVVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFR 335 Query: 289 NGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE 348 N VLVATDVAARG+D+ + V+N++ D ++++HR+GRT RAGN G A++F + Sbjct: 336 NNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWD 395 Query: 349 EAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM-RPGDVLGALTGD 407 + R +I+ L + + +SS E L I G K ++ R VL + + Sbjct: 396 DMPRWGLINKALGLSVPEPVETYSSSPHLYE----ELDIPEGTKGRLPRDKRVLAGVDAE 451 Query: 408 IGLDGADIGK 417 + D + GK Sbjct: 452 VLEDLGETGK 461 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 140/356 (39%), Positives = 201/356 (56%), Gaps = 10/356 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L+++ P L L E GY TP+Q A+P +L+ +D+ A+TG+GKTAAF + +LQ Sbjct: 3 FSELSLIDPI-LKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQ 61 Query: 64 QIDASLFQT-------QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 + ++ + L+L PTRELA Q+A R L N + + GG Q Sbjct: 62 LLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHL-NIRNTVIFGGVSQHSQV 120 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 ++L+ +++ATPGRLLD + +G +SL + V+DEADRMLDMGF + VI P Sbjct: 121 NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT 180 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRL 235 RQ+L FSAT P +A ++ + +P +E+ + IEQ Y + K LL + Sbjct: 181 HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHI 240 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L S +VF TK V L + G A ++HG+ Q R + L F + RVL Sbjct: 241 LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL 300 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 VATD+AARG+D+ L V+N+EL PE +VHRIGRT RAG+ G+A+SFC EE + Sbjct: 301 VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETE 356 >UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Verrucomicrobia RepID=B1ZWV2_OPITP Length = 409 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 199/363 (54%), Gaps = 4/363 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L + P L + GY TP+Q A+P +L G D+ A+TG+GKTAAF L +L Sbjct: 3 FKALQLSAPV-LRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPILT 61 Query: 64 QIDASLFQT-QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++ A + + LVL PTRELA QV R ARF + + + + GG +G+QR L+ Sbjct: 62 RLGAHAARAPRVLVLEPTRELAAQVETAFRDFARFT-DLRTVAVFGGVGYGLQRTELKRG 120 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +IVATPGRL+D+L T++L + LV+DE DRMLDMGF + D+I+ P RQTL Sbjct: 121 VDVIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTLF 180 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I A++ R+P +E+ ++ ++ Y ++ K LL+ LL+ Sbjct: 181 FSATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAADQKFELLEALLARTDF 240 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S +VF TK + L S LH + Q R + L F +G ++VATD+A Sbjct: 241 DSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMVATDIA 300 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ + V+N+++ PE +VHRIGRT RA G A + PE A I + Sbjct: 301 ARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDIERFIG 360 Query: 362 IKL 364 K+ Sbjct: 361 QKI 363 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 139/347 (40%), Positives = 209/347 (60%), Gaps = 8/347 (2%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P L LN+LG+ + TP+Q ++P ++ G+D+ A+TG+GKT F L +L +I Sbjct: 8 LSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHKIAEGR 67 Query: 70 ---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126 + +ALVL PTRELA Q+ + A++L +T + L GG F Q +L+ I+ Sbjct: 68 RHGIRNRALVLSPTRELATQIHQAAKDYAKYL-HTNAVLLVGGVDFIRQERNLKRNWDIV 126 Query: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 VATPGRLLDH+++ ++L + +++DEADRMLDMGF I+ ++R P RQ+LLFSAT Sbjct: 127 VATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSLLFSAT 186 Query: 187 WPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKG--KIPLLQRLLSLHQPSS- 243 P I ++ Q D + + ++ Q + T S G K+ LL+++L + + Sbjct: 187 CPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKSETG 246 Query: 244 -CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++F TK+ + + ALN+ G + +LHGD Q R++ L RF G +VLVATDVAA Sbjct: 247 QVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDVAA 306 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 RGLDI + V+N++L E +VHRIGRT RAG +G A+SF P + Sbjct: 307 RGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPAD 353 >UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=Alteromonadales RepID=A0KZD5_SHESA Length = 487 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 157/396 (39%), Positives = 217/396 (54%), Gaps = 9/396 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F TL + P L + E GYL +T VQ +P L GKD+ A+TG+GKTA+F L +L+ Sbjct: 24 FDTLGLSSPI-LNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVLE 82 Query: 64 QI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 Q+ D L + ALV+ PTRELA QV +++ ++FLP K L + GG QR Sbjct: 83 QLSKQPNDKPLLR--ALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKG 139 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 ++ I+VATPGRL D + + + L ++ TLV+DEADRMLD+GF I+ V R Sbjct: 140 VEQGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEH 199 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 QT+LFSAT+ +A+ +S ++ P + + +EQ Y + K LL L+ Sbjct: 200 QTMLFSATYSDAVKQLSHKMLNQPEWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGR 259 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + +VF +TK+ + + L G SA HGD Q R++ L F G RVLVAT Sbjct: 260 NNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVAT 319 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI++L LV+N EL + E +VHRIGRT RAG SG AISF +P + + I Sbjct: 320 DVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEA 379 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 ++ L P L A D K AK Sbjct: 380 LIGQTLPVTVQPGYEEGTPLPARYREAPTDTTKTAK 415 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 203/370 (54%), Gaps = 5/370 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS+L + P Q L ELG+ TP+Q A+P L G+DV A TGSGKT AF L +L Sbjct: 5 FSSLQLHPSLQ-QGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPILH 63 Query: 64 QI-DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q+ T+ALVL PTRELA Q+ L+ + P T + GG G Q + + Sbjct: 64 QLMSKPRGNTRALVLTPTRELAAQILESLQDVTTHTPLTGA-AVFGGVGMGPQEHAFRSG 122 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP-ASRQTL 181 +IVATPGRLLDH ++ LD L LV+DEADRMLDMGF I ++R P RQTL Sbjct: 123 VDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKRQTL 182 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P IAA++ + P+ + + A I Q Y S + K LL LL Sbjct: 183 FFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALLKRGD 242 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF TK + L G A +HG+ Q R Q L F +GS +VLVATD+ Sbjct: 243 MPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLVATDI 302 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+++L VVNF++ E ++HR+GRTARA +G A +F +PEE +I + Sbjct: 303 AARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLIERAI 362 Query: 361 QIKLNWQTPP 370 + L T P Sbjct: 363 KRALPRVTVP 372 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 143/367 (38%), Positives = 206/367 (56%), Gaps = 8/367 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L V+ P L+ + +LGY T +Q A+P ILA DV A+TG+GKTAAFGLG+L Sbjct: 2 SFEKLGVIKPL-LSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGML 60 Query: 63 QQIDASLFQTQ----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 Q++ + Q LV+ PTREL+ Q+ +L+ A+ + I L GG+ Q+ Sbjct: 61 QRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNM-GINIAVLVGGKDLESQQKI 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I++ATPGR+L+H+ KG +SL + V+DEADRMLDMGF I + P Sbjct: 120 LKEGVDIVIATPGRVLEHVDKG-LSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRH 178 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLS 237 QTLLFSAT+ + + +S + P IE ++ + I Q Y ++ K PLL ++ Sbjct: 179 QTLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYIIG 238 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 +VF TK + L + G +HGD Q +R +TL F G +VLVA Sbjct: 239 SRNFRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVA 298 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+A+RGLDI+ L V+N+EL PE +VHR+GRT RAG G+AIS E I Sbjct: 299 TDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKDIE 358 Query: 358 DMLQIKL 364 ++ +K+ Sbjct: 359 KLIGMKI 365 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 202/372 (54%), Gaps = 24/372 (6%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---------------- 65 GY +TP+Q A+P I G D+ A+TG+GKTAAF L +L I Sbjct: 20 GYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTSTDE 79 Query: 66 ------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 AS +AL+L PTRELA+QVA +++ +++LP K + GG Q L Sbjct: 80 NSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLP-IKSGVVYGGGKMASQTKML 138 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGRLL+HL V L + LV+DEADRMLDMGF I+ ++ Q Sbjct: 139 KQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQ 198 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSL 238 TL+FSAT+ + + +++ ++ + P I + + I+Q Y + + K LL L+ + Sbjct: 199 TLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLSELIGV 258 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + +VF TK+ + L G A HGD Q R++ L +F+ G RVLVAT Sbjct: 259 NNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVAT 318 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI L VVNF L + PE +VHR+GRT RAG SG AIS +P++ + I Sbjct: 319 DVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQ 378 Query: 359 MLQIKLNWQTPP 370 +++ K P Sbjct: 379 LIERKFERIVAP 390 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 212/364 (58%), Gaps = 22/364 (6%) Query: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI------DASLFQT--- 72 GY T TP+QA A+PA L G+D+ + A+TGSGKTAAF L +L Q+ + + +T Sbjct: 88 GYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQLSELQAKEKAAEKTASG 147 Query: 73 ----------QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 QAL+L PTRELA+QV +R+ + + + L GG + Q +L+ Sbjct: 148 KRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVPLVGGAAYSGQIRALKKG 207 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 IIVATPGRLLDH+ V+L L LV+DEADRMLDMGF+D I+ ++ PA RQT++ Sbjct: 208 VQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFADDINAILEATPAHRQTIM 267 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSLHQP 241 SATW + I+ +DP I I A I+++ Y + K LL++L+ + Sbjct: 268 SSATWDGPVGKIAESFTKDPERINIKVETAH--IDEKVYFCDNFDHKNKLLEQLICDPER 325 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++F TK+ + V + L + A LHGDL Q R++ + +G ++VATDVA Sbjct: 326 GQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVATDVA 385 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ ++ V N++L E +VHRIGR+ RAG +G+AI+ C+ ++ ++ I+ L+ Sbjct: 386 ARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAINLCSRDDRRQFGNIARYLK 445 Query: 362 IKLN 365 +N Sbjct: 446 RDIN 449 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 145/364 (39%), Positives = 201/364 (55%), Gaps = 6/364 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F+ L L A L + LGY TPVQ A+P +L G+D+ A TG+GKTAAF L Sbjct: 1 MQNFADLG-LSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLP 59 Query: 61 LLQQIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 +L + +A LV+ PTRELA Q++ ++ R + + T+ GG P+G Q + Sbjct: 60 ILSTLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHY-VTTVFGGTPYGPQIN 118 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 ++ +++ATPGRL D + KG V L + +LV+DEADRMLDMGF A+ ++ PA Sbjct: 119 EIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPAD 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIP-LLQRLL 236 RQTLLFSAT +I G + DP +EI +QF + K P LLQ LL Sbjct: 179 RQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALL 238 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VF TK + +AL + G A S+H D Q R + L F G +LV Sbjct: 239 EEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILV 298 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDV ARG+D+ ++ V+NF+L PE +VHRIGRT RAG G A+SF E + + I Sbjct: 299 ATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDI 358 Query: 357 SDML 360 ++ Sbjct: 359 EKLI 362 >UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=Deltaproteobacteria RepID=B8DQS6_DESVM Length = 990 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 146/397 (36%), Positives = 211/397 (53%), Gaps = 11/397 (2%) Query: 8 NVLPPAQLTNLNEL--------GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 + LPP L NL + G+ + PVQ ALP I A +D+ VQ++TGSGKT AF L Sbjct: 106 DALPPVTLANLPPMMQEAAARAGWTNLMPVQTHALPYIFAKRDLMVQSRTGSGKTGAFLL 165 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 LL+++ QAL+L PTRELA QV E R L + + GG +G Q D+L Sbjct: 166 PLLERLSPDEPAVQALILVPTRELALQVEYEARVLFEGT-GLNVAAVYGGVGYGKQMDAL 224 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR- 178 + H++V TPGR+LDHL + T++LD + LV DEADRML +GF + ++ R+ P R Sbjct: 225 RDGAHLVVGTPGRVLDHLLRRTMNLDRIRALVFDEADRMLSIGFYPDMKEIQRYLPKRRI 284 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFY-ETSSKGKIPLLQRLLS 237 LFSAT+P + ++G +P + + Q Y ET K L R++ Sbjct: 285 SAYLFSATYPPHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHLYCETKPMDKDRALVRIIE 344 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 P++ ++FCNTK + V L G +A L DL Q R+Q L G R LVA Sbjct: 345 SENPTAAIIFCNTKANVHYVTAVLQGFGYNADELSADLTQAKREQVLGSLRKGGVRFLVA 404 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARG+DI L V+ +E D E ++HR GRT RAG++G IS + I+ Sbjct: 405 TDVAARGIDIPDLSHVILYEPPEDRESYIHRAGRTGRAGSAGTVISLVDIIQKLELQRIA 464 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 +I + + P + S+A + + T ++ +A+ Sbjct: 465 KHYKIDIQHRPTPDDESVARIAGDRLTALLEARLRAR 501 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 143/351 (40%), Positives = 204/351 (58%), Gaps = 11/351 (3%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L PA L ++E GY T TP+QA A+PA+L G D+ A+TG+GKTAAF L +L ++ Sbjct: 8 LAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHKLSTGA 67 Query: 70 FQT--------QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 T +ALVL PTRELA QV +R ++L + GG Q L+ Sbjct: 68 SATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYL-ELDSTVIFGGVGMNPQISKLKK 126 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+VATPGRLLD Q+G + L + L++DEADRMLDMGF + ++ P +Q+L Sbjct: 127 GVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPKEKQSL 186 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT+ + I ++ + ++P +I++ + + I Q + K LL +++ ++ Sbjct: 187 LFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHIINENK 246 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VF TK +V + L + G A++LHG+ Q R Q L F +G R LVATD+ Sbjct: 247 WSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRALVATDI 306 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISF-CAPEEA 350 AARG+DI L VVN+E+ E +VHRIGRT RAG+SG A+SF C EE Sbjct: 307 AARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEG 357 >UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHQ1_9BACT Length = 406 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 206/367 (56%), Gaps = 4/367 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F L V+ + + E G L T +Q A+P +L + D QA+TG+GKTAAFGL Sbjct: 36 MKTFKELGVVADL-IRGIEEKGILEPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGL 94 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 LLQ+ID + + QALVL PTRELA Q+A +L ++ + GG+ Q +L Sbjct: 95 PLLQRIDPTQKRVQALVLSPTRELAKQIAKQLFHYTKYTAKIFTEAVAGGEKIEGQIAAL 154 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 HI+VATPGRL+D L+ V L ++TLV+DEAD ML MGF D ++ ++ F +++ Sbjct: 155 SRTTHIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELNKILEFTRGAKR 214 Query: 180 TLLFSATWPEAIAAISGR-VQRDPLAIEIDSTDALPPIEQQFYETSSKGKIP-LLQRLLS 237 T LFSAT P+ + + R + D + +D + + + +Y + + P + R + Sbjct: 215 TWLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWYTVCTIEEKPDEIARFIK 274 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + VVFC +K Q + + L E G +L GDL Q+DRD+ + F + VLV+ Sbjct: 275 AQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKERSEVLVS 334 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDV+ARG+D++ L VV+ +L E + HR GRTARAG G++++F + +R + Sbjct: 335 TDVSARGIDVEGLAYVVHHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDVKRIRELQ 394 Query: 358 DMLQIKL 364 L IK Sbjct: 395 TELHIKF 401 >UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacteria RepID=Q3BYG2_XANC5 Length = 453 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 146/353 (41%), Positives = 207/353 (58%), Gaps = 6/353 (1%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + L G +TP+Q A +P +LA +D+ A+TGSGKT A+ L LL Q + Sbjct: 35 LQPVFESALARAGVHALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLLQRLQAP 94 Query: 70 FQTQ----ALVLCPTRELADQVAGELRRLARFLPNT-KILTLCGGQPFGMQRDSLQHAPH 124 Q L+L PTREL QVA L LA LP KI+ GG+ Q +L+ Sbjct: 95 EQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGGAD 154 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 I++ATPGRLLD + + L ++TLV+DEADR+LD+GF +D ++ PA RQ++L S Sbjct: 155 IVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPAQRQSVLVS 214 Query: 185 ATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 AT+P AIA+++ R RDPL I D+ + P I Q+ + + LL+ LL H Sbjct: 215 ATFPAAIASLAKRRLRDPLRITHDAMPEQAPSITQRAIAVDAGQRTQLLRHLLLEHGWPQ 274 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 +VF ++ V + L++ G +AL LHG+L Q R++TL F +VLVATD+A R Sbjct: 275 LLVFVASRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLAGR 334 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 G+DI +L V+N++L + HRIGRTARAG SG+AISF + AQ+ +I Sbjct: 335 GIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQWRLI 387 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 237 bits (605), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 143/385 (37%), Positives = 217/385 (56%), Gaps = 24/385 (6%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 LP L +N G+ TP+Q P L+G+D+ A+TGSGKT AF + + I+A Sbjct: 219 LPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPAVIHINAQP 278 Query: 70 FQTQA-----LVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQHA 122 + + L+L PTRELA Q+ E R R +++I C GG G Q +LQ+ Sbjct: 279 YLQKGDGPIVLILAPTRELALQIKAECDRFGR---SSRITNTCVYGGTQRGPQARALQNG 335 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I +ATPGRL+D L+ GT +L + LVMDEADRMLDMGF + ++ RQTL+ Sbjct: 336 VEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRPDRQTLM 395 Query: 183 FSATWPEAIAAISGRV-QRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 +SATWP+ + ++ + +P+ + + + QQ+ E P +RLL+L Q Sbjct: 396 WSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKP--ERLLALMQA 453 Query: 242 SSC----------VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGS 291 +S ++FC+TK+ + L G ALS+HGD +Q +RD L +F G Sbjct: 454 ASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGR 513 Query: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 + +++ATDVA+RGLD+K ++ V+N++ E +VHRIGRT RAG SG+A SF +P++ + Sbjct: 514 SAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFSPDKGK 573 Query: 352 RANIISDMLQIKLNWQTPPANSSIA 376 A + + L+ + N P A +IA Sbjct: 574 LARQLVNCLR-EANQSVPEALETIA 597 >UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Actinomycetales RepID=D1BXK2_XYLCX Length = 605 Score = 237 bits (605), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 142/392 (36%), Positives = 214/392 (54%), Gaps = 18/392 (4%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDA---------- 67 L ++G P+QA LP L D+ QAKTG+GKT FG+ LL ++ A Sbjct: 83 LTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLLNRVVAPGEPGWDELV 142 Query: 68 SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIV 127 + + QA+V+ PTRELA QVAG+L + P+ +++ + GG+ + Q + LQ ++V Sbjct: 143 APGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAYEPQIEQLQRGAEVVV 202 Query: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187 TPGR++D L +G ++L T+V+DEAD MLD+GF ++ ++ PA R T+LFSAT Sbjct: 203 GTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILSRLPAKRHTMLFSATM 262 Query: 188 PEAIAAISGRVQRDPLAIEIDSTD----ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 P A+ +++ R P I D + I+Q Y + KI +L RLL Sbjct: 263 PGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHALDKIEVLARLLQAEGRGR 322 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 +VF TK+ V D L + G +A ++HGDL Q R+Q L +G VLVATDVAAR Sbjct: 323 SIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALRHGKIDVLVATDVAAR 382 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 G+D+ + VVN++ D ++HR+GRT RAGN G A++F ++ R ++I L+ Sbjct: 383 GIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVDWDDMPRWSLIDKALETG 442 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 P + +T A L I G K ++ Sbjct: 443 ----HPEPVETYSTSPHLFADLNIPAGTKGRL 470 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 237 bits (605), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 195/355 (54%), Gaps = 8/355 (2%) Query: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 + N+ GY T TP+QA A+P ++ G D+ A+TG+GKTAAF L +L ++ + +T++ Sbjct: 13 IANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILHRLITNPARTRS 72 Query: 75 ---LVLCPTRELADQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVAT 129 L+L PTRELA+Q+ R F+ T++ + GG Q +L+ +IVA Sbjct: 73 PRTLILAPTRELAEQI---FRSTLDFMRGTRLRATVIYGGVGMFPQVRALRQGVDVIVAC 129 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGRLLDHL +G V D L TLV+DEAD M DMGF I ++ PA RQTLLFSAT P Sbjct: 130 PGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQTLLFSATMPP 189 Query: 190 AIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 AI+ ++ DP+ + I L +E Y S K PLL LL S +VF Sbjct: 190 AISGLAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLLGEAGKESVIVFTR 249 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 TK + + L G A L G+L QR R + F GS ++LVATD+AARG+D+ Sbjct: 250 TKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATDIAARGIDVSQ 309 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKL 364 + VVNF++ E + HRIGRT RA G A +F E+ I ++ L Sbjct: 310 VAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIESHMKKPL 364 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cell... 689 0.0 UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacter... 628 e-178 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 613 e-174 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 608 e-172 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 606 e-172 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 604 e-171 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 597 e-169 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 595 e-169 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 595 e-168 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 589 e-167 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 588 e-166 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 588 e-166 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 586 e-166 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 586 e-166 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 586 e-166 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 586 e-166 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 585 e-165 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 583 e-165 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 583 e-165 UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 582 e-164 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 581 e-164 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 579 e-164 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 579 e-164 UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 578 e-163 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 576 e-163 UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteob... 576 e-163 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 575 e-162 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 574 e-162 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 574 e-162 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 574 e-162 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 573 e-162 UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromo... 572 e-162 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 571 e-161 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 571 e-161 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 570 e-161 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 569 e-161 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 569 e-161 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 569 e-161 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 568 e-160 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 568 e-160 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 567 e-160 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 567 e-160 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 567 e-160 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 566 e-160 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 566 e-160 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 566 e-160 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 566 e-160 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 565 e-159 UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobact... 565 e-159 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 564 e-159 UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina lo... 564 e-159 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 564 e-159 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 564 e-159 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 563 e-159 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 563 e-159 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 563 e-159 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 563 e-159 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 562 e-159 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 562 e-158 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 562 e-158 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 562 e-158 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 561 e-158 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 561 e-158 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 561 e-158 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 560 e-158 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 560 e-158 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 560 e-158 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 560 e-158 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 559 e-158 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 559 e-158 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 559 e-157 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 558 e-157 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 558 e-157 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 557 e-157 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 557 e-157 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 557 e-157 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 557 e-157 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 556 e-157 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 556 e-157 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 555 e-156 UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostrid... 554 e-156 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 554 e-156 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 553 e-156 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 553 e-156 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 552 e-156 UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfur... 552 e-155 UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 552 e-155 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 551 e-155 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 551 e-155 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 551 e-155 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 551 e-155 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 551 e-155 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 550 e-155 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 550 e-155 UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase ... 550 e-155 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 550 e-155 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 549 e-155 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 549 e-155 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 549 e-154 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 549 e-154 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 548 e-154 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 548 e-154 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 548 e-154 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 548 e-154 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 547 e-154 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 547 e-154 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 547 e-154 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 547 e-154 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 547 e-154 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 547 e-154 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 547 e-154 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 547 e-154 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 547 e-154 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 547 e-154 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 546 e-154 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 546 e-154 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 546 e-154 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 546 e-154 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 545 e-153 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 545 e-153 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 544 e-153 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 544 e-153 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 544 e-153 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 544 e-153 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 544 e-153 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 544 e-153 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 543 e-153 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 543 e-153 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 543 e-153 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 543 e-153 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 542 e-153 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 542 e-153 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 542 e-153 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 542 e-152 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 542 e-152 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 541 e-152 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 541 e-152 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 541 e-152 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 541 e-152 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 540 e-152 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 540 e-152 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 540 e-152 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 540 e-152 UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 540 e-152 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 540 e-152 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 540 e-152 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 540 e-152 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 539 e-152 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 539 e-152 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 539 e-152 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 539 e-152 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 539 e-152 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 539 e-152 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 539 e-152 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 539 e-152 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 539 e-152 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 539 e-151 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 539 e-151 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 539 e-151 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 538 e-151 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 538 e-151 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 538 e-151 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 538 e-151 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 538 e-151 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 537 e-151 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 537 e-151 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 537 e-151 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 537 e-151 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 537 e-151 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 536 e-151 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 536 e-151 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 535 e-150 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 534 e-150 UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium d... 534 e-150 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 534 e-150 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 533 e-150 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 533 e-150 UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacte... 533 e-150 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 532 e-150 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 532 e-150 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 532 e-150 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 532 e-150 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 532 e-149 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 532 e-149 UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing ... 532 e-149 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 531 e-149 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 531 e-149 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 531 e-149 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 531 e-149 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 531 e-149 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 531 e-149 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 530 e-149 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 530 e-149 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 530 e-149 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 530 e-149 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 530 e-149 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 529 e-149 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 529 e-148 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 528 e-148 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 528 e-148 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 528 e-148 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 528 e-148 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 528 e-148 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 528 e-148 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 528 e-148 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 528 e-148 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 528 e-148 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 527 e-148 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 527 e-148 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 527 e-148 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 527 e-148 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 527 e-148 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 527 e-148 UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 527 e-148 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 527 e-148 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 526 e-148 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 526 e-148 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 525 e-148 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 525 e-148 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 525 e-147 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 525 e-147 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 525 e-147 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 525 e-147 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 525 e-147 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 524 e-147 UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=De... 524 e-147 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 524 e-147 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 524 e-147 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 524 e-147 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 524 e-147 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 523 e-147 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 523 e-147 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 523 e-147 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 523 e-147 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 523 e-147 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 522 e-146 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 522 e-146 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 522 e-146 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 521 e-146 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 521 e-146 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 521 e-146 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 521 e-146 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 521 e-146 UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomyceta... 520 e-146 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 520 e-146 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 519 e-146 UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Try... 519 e-145 Sequences not found previously or not previously below threshold: UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 542 e-152 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 528 e-148 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 519 e-146 >UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cellular organisms RepID=DBPA_ECOLI Length = 457 Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 457/457 (100%), Positives = 457/457 (100%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG Sbjct: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ Sbjct: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ Sbjct: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV Sbjct: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML Sbjct: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV Sbjct: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK Sbjct: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 >UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacteriaceae RepID=A1JLM2_YERE8 Length = 460 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 313/458 (68%), Positives = 360/458 (78%), Gaps = 3/458 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T+FS+L LP QL+NLNELGY MTPVQAAALPAIL G+DVR +AKTGSGKTAAFG+GL Sbjct: 4 TSFSSL-TLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGL 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +I F TQALVLCPTRELADQV+ ELRRLARF N KILTLCGGQP G Q DSL H Sbjct: 63 LDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 APHI+V TPGR+ +HL+K T+ LD L LV+DEADRMLDMGF+DAIDDVI + P RQTL Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 LFSAT+P I IS RVQR P+ +E+D D P IEQ F+ET+ + ++PLL +LS +QP Sbjct: 183 LFSATYPAGIEQISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQP 242 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +SCVVFCNTKKDCQ+V +AL G S L+LHGDLEQRDRDQ LVRFAN S RVLVATDVA Sbjct: 243 ASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVA 302 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDIK LELVVNFELA+DPEVHVHRIGRT RAG SGLA+S C P+E RA+ I D LQ Sbjct: 303 ARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQ 362 Query: 362 IKLNWQTPPANSSIAT--LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 +KL W S A LE EM TLCIDGG+KAK+RP D+LGALTG+ GL AD+GKI Sbjct: 363 MKLKWTPAEQVSRSANTLLEPEMVTLCIDGGRKAKIRPSDILGALTGEAGLTAADVGKID 422 Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + P H YVA+R+A A +A +QLQ GKIKGK C+ RLLK Sbjct: 423 MFPVHAYVAIRKASAKRALQQLQQGKIKGKNCKARLLK 460 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 254/459 (55%), Positives = 319/459 (69%), Gaps = 4/459 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T+FS+L+ L P+ L NL LGY MTP+QA +LP +L GKDV Q KTGSGKTAAFGLGL Sbjct: 4 TSFSSLD-LHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGL 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L ++ F+ Q+LVLCPTRELADQVA E+R+LAR + N K+LTLCGG PFG Q SL+H Sbjct: 63 LANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HIIV TPGR+ +HL+KG ++LD LNT V+DEADRML+MGF DAID V+ AP RQ L Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNL 182 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSLHQ 240 LFSAT+P I +I+ R+ DP+ + + T I Q F++ + ++ LQ LL HQ Sbjct: 183 LFSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQ 242 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P S V+FCNTK+ Q V D L S +LHGDLEQRDRD+ LVRFAN S +LVATDV Sbjct: 243 PESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDV 302 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI+SL+ VVNFEL+ DPEVHVHRIGRT RAGN G+A+S +E I + + Sbjct: 303 AARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYM 362 Query: 361 QIKLNWQTPPANSSIAT--LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 I + + P+ + AEM TL IDGGKK K+RPGD+LGALTG G++G +GKI Sbjct: 363 NIDIRDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVGKI 422 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 V H YVAV VA A K+L+ GK+KG++ RV ++ Sbjct: 423 NVFDFHAYVAVHNTVAKAALKKLESGKMKGRSFRVSRMR 461 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 169/479 (35%), Positives = 253/479 (52%), Gaps = 25/479 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M+ F + L L LGY T VQ + +PA L KD+ V+++TGSGKTA+FG+ Sbjct: 1 MSHFKNYQISHD-ILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L + + + QAL+L PTRELA QV ++ + RF K + G F Q+ L+ Sbjct: 60 LCELANWDENKPQALILTPTRELAVQVKEDITNIGRF-KRIKATAVFGKSSFDKQKAELK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI+V TPGR+LDH++KGT+ LD L+ LV+DEAD ML+MGF + ++ +I+ P R T Sbjct: 119 QKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P+ I +S + ++P IE+ + IE + + K LL+ +L Sbjct: 179 MLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P SC++FC TK+ + D L+++G +HG + Q DR + F G R LVATD Sbjct: 239 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+DI+++ LV+N++L + E +VHR GRT RAGN G AISF E + I + Sbjct: 299 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEY 358 Query: 360 LQIKLNWQTPPANSSIA----------------------TLEAEMATLCIDGGKKAKMRP 397 + ++ P+ +A L ++ L +GGKK K+R Sbjct: 359 IGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRA 418 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 D +G + G+ DIG I + YV + K ++ +KGK +V Sbjct: 419 VDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKA 477 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 606 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 153/383 (39%), Positives = 237/383 (61%), Gaps = 4/383 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M++F + L L ++++G+ +P+QAA +P +L G+DV QA+TG+GKTAAFG+ Sbjct: 16 MSSFESFG-LNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIP 74 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ QA+VL PTRELA QVAGE+R++A++ + + + GGQ Q +L+ Sbjct: 75 LVERVSTEPR-VQAIVLTPTRELAIQVAGEIRKIAKY-KRVRSVPIYGGQSIVHQIRALK 132 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I++ TPGR+LDH+ +GT+SL + +V+DEAD MLDMGF D I+ ++R P+ RQT Sbjct: 133 QGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQT 192 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT+P + ++ R RDP I ++ + +P I+Q Y+ + K+ L R++ Sbjct: 193 MLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSE 252 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TK+ + +AL G A LHGDL Q RD+ + +F +LVATD Sbjct: 253 DIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATD 312 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V+N+++ DPE +VHRIGRT RAG GLAI+ P E + I Sbjct: 313 VAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIERE 372 Query: 360 LQIKLNWQTPPANSSIATLEAEM 382 ++ K+ + P+ +A +AEM Sbjct: 373 IKQKITVREVPSLEDVAERQAEM 395 Score = 56.0 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 M ++ G+ ++M P D + A++ + G+ G +G+I + ++ V + A ++ L Sbjct: 460 MVRFFVNVGRTSRMSPQDFVRAISEEAGVPGDAVGRIDMFEKFTFIEVEEESAPFVYEAL 519 Query: 442 QGGKIKGKTCRVRLLK 457 + +I G + K Sbjct: 520 RQSRINGTRVNLEPAK 535 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 604 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 153/381 (40%), Positives = 239/381 (62%), Gaps = 2/381 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ + L + ++G+ TP+QA A+P IL GKDV QA+TG+GKTAAFG+ ++ Sbjct: 6 TFAEF-AISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPII 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +++D QALVL PTRELA Q A E RL ++ ++ + GGQP Q +L+ Sbjct: 65 ERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKGT 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +++ TPGR++DH+++GT+ LD++ ++DEAD+MLDMGF + I+D+ R P RQT+L Sbjct: 125 VQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTIL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I I+ R QRDP ++I + +P IEQ + E + K+ L R L ++ P Sbjct: 185 FSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNP 244 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK+ + + G +LHGD++Q+ RD+ + RF +GS VL+ATDVA Sbjct: 245 ELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVA 304 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ +++V N+++ D E +VHRIGRTARAG +G +++F AP E + I + Sbjct: 305 ARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRYAK 364 Query: 362 IKLNWQTPPANSSIATLEAEM 382 I++ P +A ++ ++ Sbjct: 365 IQIAKTPLPTLDDVAEMKQQI 385 Score = 59.5 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%) Query: 370 PANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAV 429 P + E M I GK ++RP D++GA G+ + G+ IG+I ++ + YV V Sbjct: 465 PGTVENSGAEPGMVRFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVDV 524 Query: 430 RQAVAHKAWKQLQGGKIKGKTCRVRLL 456 A+ + + I+G+ + + Sbjct: 525 PLEHANLVAEVMGSKTIRGQELEISIA 551 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 205/460 (44%), Positives = 293/460 (63%), Gaps = 7/460 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L + PP L L EL + T TP+QA ++P +L G+D+ QA+TGSGKTAAF L LLQ Sbjct: 3 FSALALSPP-LLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQ 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++ + QALVLCPTREL QVAGE+RRL R LP ++L L GGQP Q ++L+ Sbjct: 62 KVQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+ V TPGR++D L + + L+T+V+DEADRMLDMGF + ++ ++ P RQT+LF Sbjct: 122 HLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+P I A+S QR P+ + +++ A P I+Q Y+ K LL R+L +QP+S Sbjct: 182 SATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQVRYDCEPGDKQALLLRILRHYQPAS 241 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 +VFCN K + +L+ G S L GDLEQ +RD+ + +F N S RVL+ATDVA R Sbjct: 242 AIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGR 301 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 G+D+++L+ V+NF+L E +VHRIGRT RAG +GLA+S P + ++ + I +K Sbjct: 302 GIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDDIQLATGVK 361 Query: 364 LNW---QTPPANSSIATLEAE--MATLCIDGGKKAKMRPGDVLGALTGDI-GLDGADIGK 417 L ++ P+ + E TL I G+K KMRPGD+LGALTG+ GL+ D+GK Sbjct: 362 LERGDVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGALTGEAGGLEATDVGK 421 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 I + YVAV + V+ A+++L G+IKG+ ++ +K Sbjct: 422 IEIQDHVAYVAVARRVSRVAFQRLSEGRIKGRRYKIERVK 461 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 595 bits (1536), Expect = e-169, Method: Composition-based stats. Identities = 167/515 (32%), Positives = 262/515 (50%), Gaps = 68/515 (13%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + ++G+ +P+QA A+P I+ GKD+ QA+TG+GKTA FG+ + + ++ Sbjct: 25 LSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAETLNPRD 84 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 + QALVLCPTRELA QVA E+ ++ R + K L + GGQ Q +L++ +++ T Sbjct: 85 GRVQALVLCPTRELAIQVAQEISKIGR-QNDLKALPVYGGQSIDRQIRALRYGVQVVIGT 143 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR+LDHL + T+ L+ + +V+DEAD MLDMGF + I+ +++ P RQTLLFSAT P Sbjct: 144 PGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLFSATMPG 203 Query: 190 AIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 I ++ + ++P + I +P IEQ +YE K+ L R+L + + S ++FC Sbjct: 204 PIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIGSSIIFC 263 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 TK+ + AL G A LHGDL Q RD+ + +F +G A +L+ATDVAARGLD++ Sbjct: 264 RTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAARGLDVE 323 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISF-------------------CAPEE 349 ++ V+N+++ DPE +VHRIGRT RAG G+AI+ + Sbjct: 324 NVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTKARIQRRD 383 Query: 350 AQRANIISDMLQ---------------------------------------IKLNWQTPP 370 I + + +KL + P Sbjct: 384 LPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISELAEEYDPMEIAAATLKLLIEGPE 443 Query: 371 ANSSIATLE--------AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 A + M L ++ G+ +RP D++ A+ + G+ G IG I ++ Sbjct: 444 AETEKDEAPEFGNTGAEPGMVRLFMNIGRAQGIRPQDIVRAIAEEAGIPGNVIGVINIYD 503 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +V V + VA + + IKG+ V K Sbjct: 504 KFTFVEVPEDVAGRVMGVMHQNMIKGRKISVEPAK 538 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 167/422 (39%), Positives = 248/422 (58%), Gaps = 5/422 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F LN L L L E+G+ +P+Q A+P L G+D+ QA+TG+GKTAAFG+ Sbjct: 18 ITSFEDLN-LDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIP 76 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+I+ QALV+ PTREL QVA E+ ++ + ++L + GGQP Q SL+ Sbjct: 77 IIQKINEKDRHIQALVMSPTRELCIQVADEISKIGK-TKRIRVLPVYGGQPIERQIRSLK 135 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +++ TPGRLLDH+++GT+ L+ +N LV+DEAD MLDMGF D ++++I+ P RQT Sbjct: 136 RGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQT 195 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P I +IS + R P + I P I+Q +YET + K+ L R+L Sbjct: 196 MLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYET--RDKVDGLCRILDTT 253 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TKK + AL G A LHGDL Q RD+ + +F +G +LVATD Sbjct: 254 DDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATD 313 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI ++ VVNF++ D E +VHRIGRT RAGN+G+A++F P E ++ +I Sbjct: 314 VAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERS 373 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 ++ K+ T P ++S+ + E + + + T + D DI A Sbjct: 374 IKTKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETLEKDYDVQDIAAAA 433 Query: 420 VH 421 + Sbjct: 434 LK 435 Score = 53.7 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%) Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIG 416 + L+ ++ P + + M L ++ G+ +++ D++ ++ + + IG Sbjct: 441 AKALEEPAEEESLPDALANTGAKPGMVRLFVNIGRSSRVTVRDIVQSIAIEAEIPARSIG 500 Query: 417 KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +I+++ +V V A K + I+G + K Sbjct: 501 RISIYDKFSFVEVPMEHAEKVLAVMHRNTIRGCRVNMEPAK 541 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 589 bits (1519), Expect = e-167, Method: Composition-based stats. Identities = 155/384 (40%), Positives = 232/384 (60%), Gaps = 3/384 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + + +G+ TP+QA +P L KDV QA+TG+GKTAAFG+ Sbjct: 1 MTTFQELG-LSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++++ QALV+ PTRELA QV+ EL ++ + ++L + GGQ Q +L+ Sbjct: 60 IVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PH+IV TPGR++DH+ +GT+ L+ ++T+V+DEAD ML+MGF + I+ ++ PA RQT Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P+ I I+ R +P +++ + + +P I+Q + E K K +L RLL + Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQ 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + +ALN G +A +HGDL Q R L +F G+ +LVATD Sbjct: 239 APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V NF++ DPE +VHRIGRT RAG +G+A++F P E + + I Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERT 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMA 383 + K+ PP + +A Sbjct: 359 TKRKMERMKPPTLDEALEGQQRIA 382 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 146/383 (38%), Positives = 229/383 (59%), Gaps = 4/383 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F + + ++G+ +P+Q +P IL G DV QA+TG+GKTAAFG+ Sbjct: 1 MMKFEDFQISND-IKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL+++ S Q Q+L+L PTRELA QVAGEL++L++F ++IL + GGQ G Q +L+ Sbjct: 60 LLEKV-TSDRQVQSLILTPTRELAIQVAGELQKLSKF-KRSQILPIYGGQSIGHQIKALK 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+LDHL + T+ L +++TL++DEAD MLDMGF + I+ +++ +RQT Sbjct: 118 RGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQT 177 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P I +S + +P + I + P I Q +++ K K+ L R++ Sbjct: 178 MLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSE 237 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TKK + +AL G A LHGDL Q RD + +F + S L+ATD Sbjct: 238 TIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATD 297 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+D++++ V+N+++ DPE +VHRIGRT RAG G+A++ P E + I Sbjct: 298 VAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIEAE 357 Query: 360 LQIKLNWQTPPANSSIATLEAEM 382 +++ + Q P+ + + + Sbjct: 358 IKMTIPSQRIPSVEEVVEKQQHV 380 Score = 45.3 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 M I+ G+ ++ P + ++ +G+ +G+I + ++ V Q VA ++ L Sbjct: 446 MTRFFINVGRNIELTPKKLAEEVSQLVGIPTKSVGRIDIFDNFTFMEVPQEVAPFVYEGL 505 Query: 442 QGGKIKGKTCRVRLLK 457 + ++ G + K Sbjct: 506 KYSRVNGARINLEPAK 521 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 160/380 (42%), Positives = 240/380 (63%), Gaps = 2/380 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + + E+G+ +P+QA A+P + G+D+ QA+TG+GKTAAFG+ LL Sbjct: 5 KFDELQ-LDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q++D + + QA++L PTRELA QVA E+RRLA+F+ TK+L + GGQ Q SL+ Sbjct: 64 QKVDPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKDG 123 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+V TPGR++DH+++ TV +D ++T+V+DEAD ML+MGF + ++ ++ P RQTL+ Sbjct: 124 TQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLM 183 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+AIA I+ + Q DP+ + + + +P + Q +YE K K+ ++ RLL ++ P Sbjct: 184 FSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAP 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK+ + AL G A LHGDL+Q RD+ + F NG +LVATDVA Sbjct: 244 KLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ +E V N+++ D E +VHRIGRT RAG G A S +E + I + Sbjct: 304 ARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCK 363 Query: 362 IKLNWQTPPANSSIATLEAE 381 K+ Q P+ + I ++ E Sbjct: 364 TKIIPQAIPSLNDITEIKVE 383 Score = 71.8 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 43/80 (53%) Query: 377 TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHK 436 + +MA L I+ GK ++ PGD+LGA+ G+ G+ G +G I ++ + +V V A + Sbjct: 488 EGDGQMARLFINIGKAQRVTPGDILGAVAGESGIPGRMVGSIDMYDGYTFVDVPGQYADE 547 Query: 437 AWKQLQGGKIKGKTCRVRLL 456 K + KIKG+ V Sbjct: 548 VLKAMSHAKIKGRNVHVEKA 567 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 157/391 (40%), Positives = 231/391 (59%), Gaps = 2/391 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L L L E+G+ +P+QA +PA+L G DV QA+TG+GKTAAFG+ +L Sbjct: 8 TFEELG-LNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVL 66 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++ID S QAL+LCPTRELA QV+ EL RL++F+ +I + GG Q SL+ Sbjct: 67 ERIDTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKKG 126 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+V TPGR++DH+++ T+ D + +V+DEAD MLDMGF + I+ ++ P RQT+L Sbjct: 127 VHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTIL 186 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT + I +I+ R DP I++ + IEQ ++E + K+ ++ RL+ +H Sbjct: 187 FSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHI 246 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S +VFCNTK+ + + L G ++ +HGDL Q+ R + +F G +LVATDVA Sbjct: 247 KSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDVA 306 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ L+ V+N+++ D E +VHRIGRT RAG SG A S A +E R I + Sbjct: 307 ARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYTK 366 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 +K+ P+ I + I K Sbjct: 367 VKIEKGVIPSFEDIVGVRKARFVENISNSIK 397 Score = 69.9 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 EA M L + G+K + P D++GA+ G+ + G IG I ++ +V V + A Sbjct: 512 EAGMTRLFLSLGRKDHIMPKDIVGAIAGEANIPGKTIGAIDIYDKFTFVDVPERDARAVL 571 Query: 439 KQLQGGKIKGKTCRVRLLK 457 + + G IKGK ++ + K Sbjct: 572 RAMDGNTIKGKPVQIDIAK 590 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 158/446 (35%), Positives = 244/446 (54%), Gaps = 8/446 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L + P L L ELGY + +P+QAA +P +L +DV QA+TG+GKTA+F L +L Sbjct: 9 FADLKLSEP-LLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILA 67 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +ID QALVL PTRELA QVA +R A ++P +L + GGQ +G Q +L+ Sbjct: 68 RIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGV 127 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H++V TPGR++DHL+KG++ L + T+V+DEAD ML MGF D ++ +++ P SRQT LF Sbjct: 128 HVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALF 187 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P AI I+ RDP I + + T I Q+++ S K+ L R+L Sbjct: 188 SATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAENFD 247 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++F TK + + L G SA +++GD++Q+ R++T+ + +G +LVATDVAA Sbjct: 248 GMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAA 307 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD++ + V+N+++ DPE + HRIGRT RAG SG AI F AP E I + Sbjct: 308 RGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERATRQ 367 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKIAV 420 ++ P+ ++ + I A ++ + + +I Sbjct: 368 PISVLELPSVEAVNDVRISRFKEQIAETIAAGGLEVFHSLIEDYEREHNVPAVEIAAALA 427 Query: 421 H----PAHVYVAVRQAVAHKAWKQLQ 442 + + + V ++W + Sbjct: 428 KLARGDVPLLLDKKNEVRERSWSDDK 453 Score = 49.9 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 35/75 (46%) Query: 381 EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQ 440 +M ++ G ++P +++GA+ + GL+ IG+I + + + + + + + Q Sbjct: 643 DMEPYRVEVGHAHGVKPANIVGAIANEAGLEAKYIGRIEIFDDYSLLDLPAGMPTEVFDQ 702 Query: 441 LQGGKIKGKTCRVRL 455 L+ I R+ Sbjct: 703 LKSVAIGTHKLRLSR 717 Score = 49.1 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 365 NWQTPPANSSIATLE-AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 P I A M + I+ G ++PG+++GA+ + LD IG+I ++ Sbjct: 482 ERPAAPRKERIPRAPDAGMQSFRIEVGHAHGVKPGNIVGAIANEASLDSKYIGRIEIYDD 541 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 + + + + ++ + + L+ + G+ + Sbjct: 542 YSTLDLPENLSPEQFNHLKTVWVAGQQLNISR 573 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 159/395 (40%), Positives = 227/395 (57%), Gaps = 3/395 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + L ++ +G+ TP+QA +P L GKD+ QA+TG+GKTAAFGL Sbjct: 1 MTTFRELG-LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL ++D Q +V+ PTRELA QV EL ++ + +IL + GGQ Q +L+ Sbjct: 60 LLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PHIIV TPGR+LDH+ + T+ L + T+V+DEAD ML+MGF + I+ ++ P + QT Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P+ I I+ R +P I++ + + P I+Q + E K K +L RLL + Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + +ALN G +A +HGDL Q R L +F GS VLVATD Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V NF++ DPE +VHRIGRT RAG G+A+ F P E+ + I Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 + K++ P + + + + + Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENE 393 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 166/482 (34%), Positives = 249/482 (51%), Gaps = 27/482 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L + P L L ++GY +P+Q A+P +LAG D+ QA+TGSGKTAAFGL Sbjct: 1 MTTFADLGLSAP-VLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++ +D S QALVL PTREL QV LR ++ + GG P Q+ L+ Sbjct: 60 LMEYVDPSDRDVQALVLTPTRELCIQVTQALRSYGA-RKGIDVVAVFGGAPIRSQQAQLR 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I+V T GR+ D + + ++ L +V+DEAD MLD+GF + ++ ++ P SRQT Sbjct: 119 AGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P I +S R +P+ +++ + + +EQ E S + K +L +L Sbjct: 179 ALFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P +VF TK C + L + G + +LHGD+ Q RD ++ F +G +LVATD Sbjct: 239 KPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI S+ VVNF++ P+V+VHRIGRT R G SG AI+F ++ + I Sbjct: 299 VAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIERH 358 Query: 360 LQIKL------------------------NWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 + + P N A + L + GG + Sbjct: 359 TRTPMAPWTAGARVAALRVEVKPKRHESKPHDAAPTNGDRAATDGARTRLVVAGGLAQGI 418 Query: 396 RPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 P D++ A+T GLDG + I V ++ V A A + +Q++G + G R+ Sbjct: 419 EPKDLIHAITSAAGLDGESVRNIRVLEQFAFLDVPAADAARVVEQVEGTDVDGHRLRLEP 478 Query: 456 LK 457 ++ Sbjct: 479 VR 480 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 145/416 (34%), Positives = 223/416 (53%), Gaps = 4/416 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L P + +G+ +P+Q +P ++AG+DV A+TG+GKTAAF L +L Sbjct: 132 GFGDLG-LSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPIL 190 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +++ + QALVL PTRELA QVA A + IL + GGQP+G Q L+ Sbjct: 191 SRLNLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRG 250 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 H++V TPGR++DHLQKG++ + L +V+DEAD ML+MGF + ++ ++ P +Q L Sbjct: 251 AHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVAL 310 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI +S R P + + ST IEQ + + K+ L R+L + Sbjct: 311 FSATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDF 370 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + ++F TK D + + + L G A +++GD+ Q R++T+ + +G +LVATDVA Sbjct: 371 DAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 430 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + V N+++ D E +VHRIGRT RAG SG A+ F P E + I + Sbjct: 431 ARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIERATK 490 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG--DVLGALTGDIGLDGADI 415 +LN P+ + + + D++ G+ DI Sbjct: 491 SRLNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTYAEANGVTLEDI 546 Score = 59.5 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 370 PANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAV 429 PA EM + G + ++RPG ++GAL + GL+ D G+I++ H V + Sbjct: 599 PAPRFTDRNGNEMEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVEL 658 Query: 430 RQAVAHKAWKQLQGGKIKGKTCRVR 454 + + ++ L ++ G+ + Sbjct: 659 PADLPKQVFEALDQTRVSGQLINIE 683 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 162/449 (36%), Positives = 239/449 (53%), Gaps = 18/449 (4%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT F + + +G+ TP+QA +P LA KDV QA+TG+GKTAAFG+ Sbjct: 1 MTITFQDFQLSSD-LTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+++I+ QA+V+ PTRELA QV+ EL ++ + ++L + GGQ G Q +L Sbjct: 60 PLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRARVLPIYGGQDIGRQIRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + PHIIV TPGRLLDH+ + T+ L +NT+V+DEAD ML+MGF + I+ ++ PA Q Sbjct: 119 KKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQ 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P I I+ R +P +++ + + + I+Q + E + K L RLL + Sbjct: 179 TLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDI 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 P +VF TK+ + +ALN G +A +HGDL Q R L +F G+ VLVAT Sbjct: 239 QSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V NF++ DPE +VHRIGRT RAG +G+A++F P E I Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + K++ P + ++ D + + + L+ Sbjct: 359 TTKRKMDRMKAPTLDEAIEGQQQVT--------------VDRIRTIIEENNLNFYMTAAA 404 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIK 447 + H V V A K+ ++ Sbjct: 405 ELLEDHDSVTVVAAAIKMMTKEPDNTPVR 433 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 141/363 (38%), Positives = 216/363 (59%), Gaps = 1/363 (0%) Query: 16 TNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQAL 75 + ++G+ T +P+QAA +P + G+DV A+TG+GKTAAF L +L ++D S + QAL Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQAL 226 Query: 76 VLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLD 135 VL PTRELA QVA + A L +L + GGQ +G+Q L+ HI+V TPGR++D Sbjct: 227 VLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVID 286 Query: 136 HLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAIS 195 HL++G++ L L LV+DEAD ML+MGF + ++ ++ P +QT LFSAT P +I +S Sbjct: 287 HLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLS 346 Query: 196 GRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDC 254 + DP + I S I QQ+ + K+ L R+L + + + ++F TK++ Sbjct: 347 KQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNT 406 Query: 255 QAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 + + + L G SA +++GD+ Q R++T+ + +G +LVATDVAARGLD++ + VV Sbjct: 407 EELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVV 466 Query: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSS 374 N+++ D E +VHRIGRT RAG SG AI F P E + I + + P Sbjct: 467 NYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDE 526 Query: 375 IAT 377 + Sbjct: 527 VNE 529 Score = 62.6 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 L + + + PP + EMA I GK+ ++RPG ++GA+ + GL+ D GK Sbjct: 611 RSLNERFSGKEPPRFTD--RTGKEMAVYKIAVGKRQQVRPGAIVGAIANEGGLNSRDFGK 668 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVR 454 I++ H V + + + ++ L+ ++ G+ ++ Sbjct: 669 ISIFSEHSLVELPADLPMEVFEALEDTRVSGQLIKIE 705 >UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=A6VVX6_MARMS Length = 438 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 216/438 (49%), Positives = 298/438 (68%), Gaps = 1/438 (0%) Query: 21 LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80 +G+ T TP+Q +LP ++ GKD+ QA+TGSGKT AF + LL +I+ F QALV+CPT Sbjct: 1 MGFTTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIALLLKINPRFFGVQALVMCPT 60 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELADQV+ E+R++AR+ N K+L+LCGG PFG Q SL+H HI+V TPGRL++HL+KG Sbjct: 61 RELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGRLMEHLRKG 120 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 T+ L+ALNTLV+DEADRMLDMGF D+I +++ P++RQTLLFSAT+ + I AIS Q Sbjct: 121 TLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAISKEFQS 180 Query: 201 DPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 P++I++++ + L P IEQ F + +K K L L +P +VFCNTK + Q V D Sbjct: 181 TPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFCNTKAESQVVAD 240 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 L+E +A ++HGDLEQR RDQ LVRF+N S+ VLVATDVAARG+D+K ++LVVN++ Sbjct: 241 WLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLVVNYDTT 300 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLE 379 D +VH HRIGRT RAG +G+A++ ++ + I I N+ A L Sbjct: 301 RDTDVHTHRIGRTGRAGAAGIAVNLVTSKDDYKVRDIESRFNITANFIELEAIDPHYRLI 360 Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 + T+ D G+K K+RPGD+LGALT +GLD + +GKI + H YV+V VA K Sbjct: 361 PQKTTISFDAGRKNKLRPGDILGALTAGLGLDKSQVGKIDIFDFHAYVSVDNEVAKTVVK 420 Query: 440 QLQGGKIKGKTCRVRLLK 457 + + KIKGK R R+L+ Sbjct: 421 EFENKKIKGKNIRARILR 438 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 160/450 (35%), Positives = 251/450 (55%), Gaps = 7/450 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS+L + P L + ++G+++ +P+QA A+P IL G+DV QA+TG+GKTAAFG+ L Sbjct: 33 FSSL-AISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALD 91 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID Q L+LCPTRELA QVA E+++LA++ +I + GG Q SL+ Sbjct: 92 LIDVQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGV 151 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI++ TPGR++DH+++ T+ L+ + +++DEAD MLDMGF + I+ ++ P RQT+LF Sbjct: 152 HIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILF 211 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT + I I+ + Q+DP+ +++ + IEQ ++E SK K+ ++ RL+ ++ Sbjct: 212 SATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLK 271 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFCNTK+ + + L G A LHGDL Q R+ + +F G+ +LVATDVAA Sbjct: 272 LLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAA 331 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ ++ V+NF++ D E +VHRIGRT RAG SG A SF +E R I ++ Sbjct: 332 RGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKV 391 Query: 363 KLNWQTPPANSSIATLEA--EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 K+ P+ I + + L + + D L G I +A Sbjct: 392 KVEKGVIPSFEDIVGVRKARFIEQLQQTIQESKDLNLYDDLLTQLNHAGFSTEQI--VAA 449 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKT 450 + A + L+ + G+ Sbjct: 450 LVKRSMGLEKNEFADQNLN-LEDDRRNGRD 478 Score = 80.3 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 44/81 (54%) Query: 377 TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHK 436 EA M L + G+K +RPGD++GA+ G+ + G IG I + YV V + VA++ Sbjct: 563 EREANMTRLMVSIGRKDFVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANR 622 Query: 437 AWKQLQGGKIKGKTCRVRLLK 457 ++G IKG+ + + + Sbjct: 623 VVDAMEGNTIKGRRVNIEVAR 643 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 149/373 (39%), Positives = 222/373 (59%), Gaps = 2/373 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L + + + +GY T +P+QAA +PA+L G+DV QA+TG+GKTAAF L +L Sbjct: 11 FAQLG-LSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLS 69 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID + QALVL PTRELA QVA + + +P ++L + GGQP+G Q +L+ Sbjct: 70 NIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGV 129 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+V TPGR++DHL + T+ L L TLV+DEAD ML MGF D ++ V++ PA RQ LF Sbjct: 130 HIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVALF 189 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I I+ +DP+ + I + I Q+++ S K+ L R+L + Sbjct: 190 SATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFD 249 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++F TK + + L G +A +++GD++Q R++T+ G +LVATDVAA Sbjct: 250 AMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAA 309 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD++ + V+N+++ +D E +VHRIGRT RAG SG AI F P E I + Sbjct: 310 RGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQ 369 Query: 363 KLNWQTPPANSSI 375 + P+ ++ Sbjct: 370 PIEEMQLPSVEAV 382 Score = 51.0 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + + PP + E M T I G + ++P +++GA+ + GL+ IG+I + Sbjct: 489 EQRPRRDVPPRGAP----EQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIGRIDI 544 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVR 454 H + + + LQ + G+ ++R Sbjct: 545 HDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMR 578 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 144/377 (38%), Positives = 220/377 (58%), Gaps = 4/377 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M +F L L + L + G+ TP+Q A+P ++ G +DV QA+TG+GKTAAFG+ Sbjct: 1 MESFKNLG-LSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ ID S TQAL+L PTRELA QVA E+ + + + + GGQ Q L Sbjct: 60 PILETIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIREL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR+LDH+ + T+ L+ ++ +V+DEAD ML+MGF D ++++++ ++ Sbjct: 119 KRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIE-QQFYETSSKGKIPLLQRLLSL 238 LLFSAT P++I ++ R+ I++ + Q +YE S+ K LL R++ + Sbjct: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDV 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC TK D + L E G +A LHGD+ Q R++TL +F VLVAT Sbjct: 239 EKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+DI L VVN+++ +PE +VHRIGRT RAG G A++F P E ++ I Sbjct: 299 DVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQK 358 Query: 359 MLQIKLNWQTPPANSSI 375 + ++ + P I Sbjct: 359 IANTEIRKEEVPDVKDI 375 >UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B113_SULD5 Length = 463 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 215/458 (46%), Positives = 284/458 (62%), Gaps = 10/458 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F+ L + A L L LGY MTP+Q A+LP IL G+D+ +AKTGSGKT AFGL L Sbjct: 6 TPFNHL-IQNSAMLETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L + + Q++VLCPTRELA+QV+ ELR+LA F N KI+TLCGG F Q SL+H Sbjct: 65 LLALHVKQMRIQSVVLCPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEH 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HI+V TPGR+L HLQ+ T++ + + TLV+DEADRMLDMGF + I+ +I P RQTL Sbjct: 125 GAHIVVGTPGRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTL 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP--IEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT+P I + VQ++ L I ++ P I Q + + K L+ L Sbjct: 185 LFSATFPREIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLNE 244 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P S ++FC TK A+ +L E G AL LHGDLEQ RD+ L+ FANGSA++LVATD Sbjct: 245 MPKSVIIFCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATD 304 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARGLDIK +E+V+N+EL E++ HRIGRT R G G AISF P E + + Sbjct: 305 LAARGLDIKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTPSEESFLHELER- 363 Query: 360 LQIKLNWQTPPANS----SIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 + + A + AE TLCIDGGKK K+R GD+LG LT DIGL+G+ I Sbjct: 364 --VGFAFTCKDAREILPLHVKPKRAEFITLCIDGGKKQKVRAGDILGVLTKDIGLEGSLI 421 Query: 416 GKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 GKI + + YVA+++ A KA+ L IK + ++ Sbjct: 422 GKIDILEKYAYVAIKREYADKAFNGLCATTIKNRRFKI 459 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 169/419 (40%), Positives = 245/419 (58%), Gaps = 6/419 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F LN+ P + ++G+ +P+Q+ A+P ILA KDV QA+TG+GKTAAFG+ LL Sbjct: 5 KFKDLNI-SPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLL 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + ID+ QA++LCPTRELA QVA ELR+L+ +LP +L + GGQP Q +LQ Sbjct: 64 ENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKG 123 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 II+ TPGR++DH+ +GT+SL+ + T+++DEAD MLDMGF + I+ ++ P RQ LL Sbjct: 124 VQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLL 183 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I ++ R Q +P +++ + P +EQ+++E K+ LL RLL LH Sbjct: 184 FSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDF 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK+ + L G A LHGDL Q RD+ + +F G+ +LVATDVA Sbjct: 244 DLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ +E V NF++ D E +VHRIGRT RAG +G A SF + E + I + Sbjct: 304 ARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAK 363 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 K+ PA S + ++ + K K+ D+ L D I + Sbjct: 364 TKIEQAPIPALSDVEEVKKD----NFIEELKEKINTEDISKETYIIEKLVEEDYNSIDI 418 >UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteobacteria RepID=B2SHR4_XANOP Length = 458 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 235/459 (51%), Positives = 298/459 (64%), Gaps = 4/459 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M FS L L PA ++ LGY +TPVQA +LP IL G DV QA TGSGKTAAFGLG Sbjct: 1 MNEFSAL-PLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLG 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQ++D +L + QALVLCPTRELADQV +LR+LA +PN K++ L GG P G Q SL+ Sbjct: 60 LLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 HA-PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 PH++V TPGR+ + +K + L + TLV+DEADRMLDMGF + I ++ RQ Sbjct: 120 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LLFSAT+P+ I ++ + +DP+ I ++ D P I+QQF+E + + LL Sbjct: 180 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRF 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P S VVFCNT+K+ V +L E G SAL+LHGD+EQRDRD+ LVRF N S VLVA+D Sbjct: 240 TPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ L VVN+EL D E + HRIGRTARAG GLA+S AP E RA + Sbjct: 300 VAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQALEAE 359 Query: 360 LQIKLNWQTPPANSSIATL--EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 L W P ++ +A M TL IDGGK K+R GD+LGALTG+ GL GA IGK Sbjct: 360 QGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGK 419 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 IA++P YVA+ +A KA L GKIKG+ RV L Sbjct: 420 IAIYPTRSYVAIARAQVAKALAHLHAGKIKGRRFRVSKL 458 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 159/470 (33%), Positives = 251/470 (53%), Gaps = 25/470 (5%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ + L ++ LGY + VQ +P IL KD+ V+++TGSGKTAAFG+ L Sbjct: 3 NEFTKFKI-SDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPL 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++D + Q LVL PTRELA QV+ ++ + RF K +++ G +P Q L+ Sbjct: 62 CEKVDWNENIPQILVLTPTRELAVQVSEDITNIGRF-KRIKSVSIFGKEPISEQERKLKQ 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H++V TPGR+LDH+ +G+++L + V+DEAD ML+MGF ++ +IR P + T+ Sbjct: 121 KTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTM 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT PE I + + P+ I I++ I+ Y T+ + KI L +L + Sbjct: 181 LFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEK 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P + V+F TK++ V L G S +HG + Q++R + F G R+LV+TD+ Sbjct: 241 PETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDL 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 A+RG+D+K + V+N++L + E +VHRIGRT RAG G AISFC E+ + + I + + Sbjct: 301 ASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEFI 360 Query: 361 QIKLNWQTPPA----------------------NSSIATLEAEMATLCIDGGKKAKMRPG 398 K+ P T+ + + ++GGKK K+R G Sbjct: 361 GFKIPVYNLPEKIMVEKEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKKIRAG 420 Query: 399 DVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 D++GA+ G+ DIG I V + YV + + +L+ IKG Sbjct: 421 DIVGAICKMDGIKSEDIGIIDVQDSVSYVDILNGKGKRVIDELKNITIKG 470 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 574 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 152/452 (33%), Positives = 243/452 (53%), Gaps = 21/452 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ N L L + E+G+ +P+Q A+P +L +D+ QA+TG+GKTA+FG+ Sbjct: 2 IENFNDFN-LSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIP 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++++ + TQA+VLCPTREL+ QVA E+ +LA++ ++ + GGQP Q SL+ Sbjct: 61 IVEKVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKY-KGVTVVPIYGGQPIERQIRSLK 119 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IV TPGR++DH+++ T+ + + T V+DEAD M DMGF + I+ +I F P RQT Sbjct: 120 MGVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQT 179 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 FSAT + + R Q +P I++ + +P + Q ++ K+ +L R+L + Sbjct: 180 TFFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQ 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P VVFCNTKK + L G A LHGDL+Q RD + +F N + +LVATD Sbjct: 240 NPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+D+ ++LV+N+++ D E +VHRIGRTARAG G AISF +P E + I Sbjct: 300 VAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQKY 359 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + K+ + P + E D+ + + ++ I Sbjct: 360 TKTKIEKRDMPTLKDLIKRHEERFM-------------EDIKEEINKNEHTKELNLINIL 406 Query: 420 VHPAHVYVAVRQAVAHKAWKQL-QGGKIKGKT 450 + + + + A K + K+ Sbjct: 407 MSEDYSPIDI----AACLLKHYNENNKLNNHE 434 Score = 50.7 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%) Query: 384 TLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQG 443 + I+ G + + ++ AL D + DIG I + +V + + A L Sbjct: 470 RIYINIGSRKGVSQRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNALKDAVNNLNN 529 Query: 444 GKIKGKTCRVRLL 456 IKG V L Sbjct: 530 AHIKGFKVLVELA 542 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 149/449 (33%), Positives = 236/449 (52%), Gaps = 8/449 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN L P + + GY T +Q+A +P ++ G DV Q++TG+GKTAAF + ++ Sbjct: 2 KFNELN-LSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60 Query: 63 QQID-ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + ++ + QAL+L PTRELA QV E+R+ ++ + + + GGQ Q L+ Sbjct: 61 EMLEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELKK 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR+LDH+++ T+ D LV+DEAD ML+MGF + I+ VI P RQT+ Sbjct: 121 GADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTV 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I I+ + Q +P+ I+ T P IEQ +Y + K +L +L+S+ Sbjct: 181 LFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLISMQN 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P ++FCNTKK + L G A +LHGD++Q R + F G +LVATDV Sbjct: 241 PHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ S+++V N++L + E +VHRIGRT RAG GLA++ + + Sbjct: 301 AARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLERTT 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGG-KKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + KL + P+ + + + ++ + P + D G ++ Sbjct: 361 RSKLTQKPLPSLEEVRKIRLDFLREDLEHRMTRDVPEPLAAIIDTMKDDGYSYREMALAL 420 Query: 420 VHPAHVY----VAVRQAVAHKAWKQLQGG 444 + + + A A A + G Sbjct: 421 AYQIAGHEMFDESAWNASARPALTVTEKG 449 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 147/427 (34%), Positives = 229/427 (53%), Gaps = 4/427 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ LN L L +N++G+ +P+Q+ ++P + G D+ QA+TG+GKTAAFG Sbjct: 4 IKTFNELN-LKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSI 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L + QAL+L PTRELA QV EL R+A+ + IL + GGQP Q +L+ Sbjct: 63 ILNNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNM-RLNILPIYGGQPIDRQLRALR 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 + I+V TPGR+LDHL++ +++ + + LV+DEAD ML+MGF D I++V++ RQT Sbjct: 122 NGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQT 181 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P+AI +S R + D I I+ I Q +YE + + L R++ Sbjct: 182 LLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDA 241 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P + ++FC TKK + ++ G +HGD+ Q R TL +F + LVAT Sbjct: 242 DEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVAT 301 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D++++ V+N++L D E +VHRIGRT RA G A + P E I Sbjct: 302 DVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIEK 361 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + K+ + P I ++ + + + + + A D D+ Sbjct: 362 TTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKFIPYATELDDDYSLVDVAAA 421 Query: 419 AVHPAHV 425 + A Sbjct: 422 LMKIAFS 428 Score = 50.3 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%) Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 L P NSS L + G++ + P +++ + IG IA+ Sbjct: 440 LEVPEPMRNSSARGASRGQKRLFVSAGRRDNVSPKELVQFFKDSSRIQPRQIGDIAIMEN 499 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +V V ++ K G ++KG+ + + K Sbjct: 500 FSFVNVDTSIVDDILKFSSGKRLKGRKINIEVAK 533 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 150/380 (39%), Positives = 222/380 (58%), Gaps = 2/380 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS + L L ++ ++G++ TP+Q+ A+P IL G+D+ QA TG+GKTAAFG+ LL Sbjct: 4 NFSEMG-LSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLL 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + +D S + QAL+LCPTRELA QVA E+ LA ++L + GGQ Q ++L+ Sbjct: 63 EMLDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKKG 122 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DH+++ T+ LD +V+DEAD ML+MGF + I ++ RQ + Sbjct: 123 IQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQITM 182 Query: 183 FSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+AI A++ Q++P I+ I+ + +EQ + E K L +L+ + P Sbjct: 183 FSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNP 242 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTKK + L G LHGD+ Q R++ + F N S +VLVATDVA Sbjct: 243 QLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVA 302 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ +E V N+++ D E +VHRIGRT RAG +G A SF R I + Sbjct: 303 ARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLREIQRYTK 362 Query: 362 IKLNWQTPPANSSIATLEAE 381 IK+ P+ + T E Sbjct: 363 IKIKSLNVPSEKDVNTKRME 382 >UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromonadales RepID=B4RRN6_ALTMD Length = 459 Score = 572 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 198/449 (44%), Positives = 272/449 (60%), Gaps = 2/449 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 + PA L+ G ++P+QA +LP L GKDV QA+TGSGKT F + L++I+ + Sbjct: 11 INPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPALEKIEVND 70 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 F TQA++LCPTRELA+QVA + R A+ + N K+ TLCGGQP G Q SL+H+PHIIV T Sbjct: 71 FSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKHSPHIIVGT 130 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DH++K + L + V+DEADRMLDMGF D + + P QTLLFSAT+ E Sbjct: 131 PGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFSATFTE 190 Query: 190 AIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 I ++ + +P+ +++S + P I Q Y + L+ +L+ +QP + +VFCN Sbjct: 191 QIERVAKQYLHNPVTCKVESQENKPAITQLGYNVLPHTRTQALKAVLTEYQPKNAIVFCN 250 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 K V D L E G SA L GD+EQ R L++FA+ S +VLVATDVAARGLDI Sbjct: 251 RKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTSVLMQFASDSLQVLVATDVAARGLDIDD 310 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS--DMLQIKLNWQ 367 + V+N+ ++ +PE H+HRIGRTARAG G+AI+ + EE I I L Sbjct: 311 VACVINYTVSEEPETHIHRIGRTARAGAKGMAITLVSEEEEHFLRKIEVLQESDIPLKGA 370 Query: 368 TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYV 427 + E + + GKK K+RPGD++GALT D G+ G D+GKI V + +V Sbjct: 371 QSLRFHKNKITQPEFTCISLSAGKKEKLRPGDLVGALTKDAGIPGDDLGKIKVQNSMSFV 430 Query: 428 AVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 AV+ KA Q + GKIKGK R R L Sbjct: 431 AVKTRSVKKAMTQFREGKIKGKRIRARKL 459 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 158/413 (38%), Positives = 242/413 (58%), Gaps = 7/413 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F ++ L L ++E G+ TP+Q ++P +AG D+ QA+TG+GKTA+FG+ +L Sbjct: 5 NFYSMG-LKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPIL 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++ QALVLCPTRELA QV E+ L+R + ++L + GGQ +Q SL+ Sbjct: 64 NRVIKGE-GLQALVLCPTRELAVQVTEEISSLSRRM-RIQVLAIYGGQSIELQLRSLRRN 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P IIV TPGRL+DH+ +GT+SL L +V+DEAD MLDMGF I ++ P RQT L Sbjct: 122 PEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ + + + + P I I+S + +P IEQ +Y+ +S+ KI L R++ QP Sbjct: 182 FSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQP 241 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++FC TK++ + L G +A +LHGD+ QR+RD + F G+ ++LVATD+A Sbjct: 242 PISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLA 301 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDI+ + V NF++ D + ++HR+GRT RAG SG+AI+ P + + +I Sbjct: 302 ARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTG 361 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGAD 414 ++ P +A + L ++ ++A PGDV +L + G Sbjct: 362 KRIERALLPT---LAEAVEKRQDLLLERVRQASAEPGDVCLSLAEKLMQQGDP 411 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 152/387 (39%), Positives = 221/387 (57%), Gaps = 11/387 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L ++ P L + + GY TP+Q A+P ++AGKDV A+TG+GKTA F L LL Sbjct: 2 SFADLGLI-PELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60 Query: 63 QQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 +I + QT+AL+L PTRELA QV ++ ++ LP + + + GG Sbjct: 61 HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLP-LRSVCVYGGVDIRP 119 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q+ L+ I++ATPGRLLDHL++ +++L + LV+DEADRMLDMGF I ++ Sbjct: 120 QQAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALL 179 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQ 233 P RQ+LLFSAT+ + I ++ ++ ++P IE+ + + I + SS K LL Sbjct: 180 PKQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLA 239 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 LL + +VF +TK C + L G SA ++HGD Q+ R TL F +G R Sbjct: 240 HLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLR 299 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATDVAARGLDI L V+NFEL E +VHRIGRT RAG+ G AIS + EE Sbjct: 300 VLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWL 359 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEA 380 + I ++++++ + P Sbjct: 360 SEIEKLIKLQIPQERVPGFDPDPDFHE 386 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 155/388 (39%), Positives = 222/388 (57%), Gaps = 2/388 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F+ L + P L LN+LGY +P+QA +P +L G+DV A+TGSGKTAAF L L Sbjct: 6 TTFADLGLKAP-ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ +D L Q LVL PTRELA QVA + ++ + ++ L GGQ + +Q +L+ Sbjct: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P I+V TPGRLLDHL++GT+ L L+ LV+DEAD ML MGF + ++ ++ P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT PEAI I+ R ++P + I S+ P I Q ++ K L R L Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + ++F TK V +AL G ++ +L+GD+ Q R+QTL R +G +L+ATDV Sbjct: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + LVVN+++ D E +VHRIGRT RAG +G A+ F E + I + Sbjct: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCID 388 ++ + P + E + Sbjct: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQ 392 Score = 42.2 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 33/77 (42%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 +M I+ G+ + ++GA+ + + IG I + +H + + + + + + Sbjct: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 Query: 440 QLQGGKIKGKTCRVRLL 456 +I K ++LL Sbjct: 544 HFTRTRILNKPMNMQLL 560 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 569 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 150/375 (40%), Positives = 220/375 (58%), Gaps = 2/375 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + FS + ++ P L L++LGY T T +QA +P ILAG+D+ QA+TG+GKTAAF L L Sbjct: 19 SGFSEMGLIKP-VLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPL 77 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +ID L + Q LVL PTRELA QVA + A + +L + GGQ + Q + L+ Sbjct: 78 LSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR 137 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H+IV TPGRL+D +++G + L + TLV+DEAD ML MGF D ++ ++ P RQ Sbjct: 138 GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVA 197 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I I+ + DP + I T I Q+F+ K+ L R+L Sbjct: 198 LFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAET 257 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK + + L G +A++L+GD+ Q+ R++T+ RF G +LVATDV Sbjct: 258 FDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDV 317 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V+N+++ E +VHRIGRT RAG +G AI F +P E +I Sbjct: 318 AARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTT 377 Query: 361 QIKLNWQTPPANSSI 375 + ++ P+ +I Sbjct: 378 RQQIEMMKLPSTEAI 392 Score = 49.5 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%) Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 M I+ G +P D++GA+ + LDG IG I + H +V + + ++ L Sbjct: 539 MERFRIEVGDVHGAKPKDIVGAIANEAELDGKFIGAITIEHDHSFVDLPIGMPATIFELL 598 Query: 442 QGGKIKGKTCRVRL 455 + ++ G+ ++ Sbjct: 599 KKVRVAGQQLKISR 612 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 213/377 (56%), Gaps = 6/377 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + L + ++G+ + +QA ++P L G D+ QA+TG+GKTAAFG ++ Sbjct: 5 KFDDLG-LKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAII 63 Query: 63 QQID--ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 D +AL+L PTRELA QV EL RL + +L + GGQP Q +L+ Sbjct: 64 NNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKH-EKLSVLPIYGGQPIDRQIRALK 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 + I+V TPGR+LD +++ ++ L+ + LV+DEAD ML+MGF D ++++++ RQT Sbjct: 123 NGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQT 182 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P I ++ + D I I + + IEQ ++E + + L R+L Sbjct: 183 LLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDF 242 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P++ ++FC TKK V + + G +HGD+ Q R QTL +F GS LVAT Sbjct: 243 DEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVAT 302 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D++S+ V+N++L D E +VHRIGRT RA G+A S P+E I Sbjct: 303 DVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQK 362 Query: 359 MLQIKLNWQTPPANSSI 375 + K+ + P I Sbjct: 363 HTKSKIIRKAVPTVDEI 379 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 157/447 (35%), Positives = 241/447 (53%), Gaps = 6/447 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS L L L ++N+LG+ + +QA A+P + G D+ QA+TG+GKTAAFG G++ Sbjct: 5 KFSNLG-LKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGII 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 I A++L PTRELA QV EL+RL+++ + IL + GG P Q +L+ Sbjct: 64 NHISKKS-GLSAIILAPTRELAIQVNDELKRLSKY-DDLTILPVYGGDPITNQIRALKRN 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +I+V TPGR+LDH+++GT+ LD + LV+DEAD ML+MGF D ++D+I+ P+ RQTLL Sbjct: 122 VNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLL 181 Query: 183 FSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P+ I ++ R + D I I T + I Q F+E S K + L R+L Sbjct: 182 FSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDT 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 PSS ++FC TKK + + + G +HGD+ Q R +TL +F GS LVATDV Sbjct: 242 PSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDV 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D++ + V+N++L D E +VHRIGRT RA G+A S +P+E I + Sbjct: 302 AARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSVT 361 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + ++ + P + I +++ + + A D +I + Sbjct: 362 KSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSKFIPVATELTQKYDSVEIIAALI 421 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIK 447 + + + + I+ Sbjct: 422 KNKFN-DDLLETYTSDVLEAPKSEDIR 447 Score = 45.6 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Query: 353 ANIISDMLQIKLNWQTPPANSS--IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGL 410 II+ +++ K N +S + ++E L + G++ + P ++ + + Sbjct: 414 VEIIAALIKNKFNDDLLETYTSDVLEAPKSEDIRLFLSIGRRDGINPKTLVNFIKDTARI 473 Query: 411 DGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 + IG I + +V + V K + G K+ + + + Sbjct: 474 RASSIGDIDILENFSFVNISPDVKDKVLDKCIGVKLNKRKVNIEVA 519 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 140/427 (32%), Positives = 232/427 (54%), Gaps = 6/427 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+TL L + + +++LG+ + +Q ++P L+G D+ QA+TG+GKTAA+ L + Sbjct: 4 NQFATLG-LKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPI 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + ++ + ++L+L PTRELA QV E++RL+++ L + GG Q +L+ Sbjct: 63 ITKMSDN-RGIKSLILAPTRELAVQVNEEIQRLSKY-EKIVTLAVYGGDSIDRQIRALRK 120 Query: 122 A-PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I+V TPGR+LD +++ + L+++ LV+DEAD ML+MGF D I +++ P+ RQT Sbjct: 121 GDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQT 180 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P+ IA ++ + + D + I + + IEQ ++ ++K ++ L RLL L Sbjct: 181 LLFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDL 240 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 PSS ++FC TK+ + L G +HGD+ Q R TL +F G+ +L+AT Sbjct: 241 DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIAT 300 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D++ + V N++L D E +VHRIGRT RA SG A S P++ I + Sbjct: 301 DVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQN 360 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + + + + P I + + ++ KA + A+ D I Sbjct: 361 VTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAIELTESYDAVSIISA 420 Query: 419 AVHPAHV 425 + Sbjct: 421 LMKMKFE 427 Score = 46.4 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 4/118 (3%) Query: 341 AISFCAPEEAQRANIISDMLQIKLNWQTP--PANSSIATLEAEMATLCIDGGKKAKMRPG 398 AI +A +IIS ++++K + +++ + + E L GK+ + P Sbjct: 405 AIELTESYDA--VSIISALMKMKFENEIVFDYSSNKLEAPKKEDVRLFFSVGKRDGLTPK 462 Query: 399 DVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 ++ + ++ + IG+I + +V V ++++ K K GGKI K V + Sbjct: 463 VLINYIKDMTKVNASAIGQIDLMENFSFVTVDESISSKILKNCPGGKINKKKVNVEVA 520 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 246/480 (51%), Gaps = 25/480 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F +N L L L LG+ + VQ +P IL KD+ V+++TGSGKTA+FG+ Sbjct: 3 IDKFENMN-LSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIP 61 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L + ++ + +AL+L PTRELA QV ++ + R L + + G QPF Q L+ Sbjct: 62 LCELVNVEENKVKALILVPTRELAIQVKEDISNIGR-LKKVRCAAIFGKQPFNEQIRELK 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI+ TPGR++DH+++G + ++ ++ +++DEAD+ML+MGF D I DV+ P S+ T Sbjct: 121 QRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P+ I + +P + I S I ++++ + K L + L Sbjct: 181 ALFSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAF 240 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 S ++FCNTK + + L + S LHGD++Q+DR T+ F N +VLVATD Sbjct: 241 TDESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATD 300 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+ I + V N+E+ + E +VHRIGR+ R GLAIS + E + N I + Sbjct: 301 VAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEEY 360 Query: 360 LQIKLNWQTPPANSSIAT----------------------LEAEMATLCIDGGKKAKMRP 397 + + I + E+ + I GKK K+R Sbjct: 361 INYSIEEANLLEYEEIIEGRKRFFESQKNDYNNKTNVKKNIHNEVTKIHITAGKKKKIRN 420 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 D++GA + L G DIG I V H +V + + K+ + ++KGK ++ K Sbjct: 421 IDIVGAFSNLEELTGEDIGIIDVQDGHSFVDILNGKGNLILKRYKEIRLKGKVAKLSKAK 480 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 567 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 156/445 (35%), Positives = 252/445 (56%), Gaps = 7/445 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ L++ P L L+E+GY T +P+QA +P +LAG D+ +A+TG+GKTAAF L Sbjct: 43 IESFAQLDLRAP-LLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALP 101 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL ++D ++ Q LVL PTRELA QVA +R A+ LP +L + GGQ +Q L Sbjct: 102 LLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLA 161 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H+IV TPGR++DH+++ +++LD+L TLV+DEAD ML MGF D ++ +++ PA RQT Sbjct: 162 RGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQT 221 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P+AI ++ R R+P ++I ST + Q++ + S K+ L R+L + Sbjct: 222 ALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVE 281 Query: 240 QP-SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + + ++F TK + D L G SA +L+GD+ Q+ R++ + + G ++VAT Sbjct: 282 EDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVAT 341 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ + V+N+++ +D E +VHRIGRT RAG +G AI F AP E + +I Sbjct: 342 DVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIER 401 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIG 416 + + P+ ++A + +++ DV+ + + DI Sbjct: 402 ATRQPIEALQLPSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAELHDIA 461 Query: 417 KIAVH--PAHVYVAVRQAVAHKAWK 439 + + ++ + Sbjct: 462 AALAFLAQRERPLQLPESKGPDIAR 486 Score = 51.4 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 19/131 (14%) Query: 341 AISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEA-----------------EMA 383 A++F A E + + + P A + Sbjct: 463 ALAFLAQRERPL--QLPESKGPDIARLPEPRREPGAERAPRENRDKILERRREFSEGNLQ 520 Query: 384 TLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQG 443 I+ G+ + P D++GA+ + G++ IG+I ++ + V + A+ H L+ Sbjct: 521 RYRIEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSALPHDVLDILRR 580 Query: 444 GKIKGKTCRVR 454 +++ +R Sbjct: 581 VRVRQHQLNIR 591 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 567 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 144/416 (34%), Positives = 220/416 (52%), Gaps = 8/416 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS L L+ + + GY TPVQ ++P IL G+D+ A+TG+GKTAAF L +L Sbjct: 63 KFSEFG-LKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVL 121 Query: 63 QQI-DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ + +ALVL PTRELA Q+ ++ R+L + + + L GG G Q +L+ Sbjct: 122 HKLTLLKRPRVRALVLTPTRELAIQIFDNFKKYGRYL-HLRTVCLYGGAKRGPQIGALRR 180 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+VATPGRLLD + + V L ++ LV+DEADRMLDMGF + ++ P+ RQTL Sbjct: 181 GADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTL 240 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 +FSAT + + ++ R+ +DP+ +++ +A +EQ+ +S + K ++ LL+ Sbjct: 241 MFSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEA 300 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VF TK + L G ++++HGD Q R L RF +G RV+VATDV Sbjct: 301 VESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDV 360 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI L V N+++ + ++HRIGRT RAG SG+AI+ C E + ++L Sbjct: 361 AARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEELL 420 Query: 361 QIKLNWQT----PPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDG 412 + + P + G + + G TG G Sbjct: 421 EKPIPELQTQWSLPLERKARKGKGGRTRHGRSGYRSGGQKNAGKSGHKTGSRNRQG 476 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 154/427 (36%), Positives = 236/427 (55%), Gaps = 4/427 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++ FST N A L ++ ++T +P+QA +P IL G+D A+TG+GKTAAF L Sbjct: 5 ISNFSTFN-FSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALP 63 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ + + TQAL+L PTRELA QVA + L+++ N I LCGGQ +G Q L+ Sbjct: 64 ILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+LDH+ KGT+ L+ L T ++DEAD ML MGF + ++ ++ P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P I I+ DP +IEI T + IEQ+F S K L R+L + Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +VF TK + V + L + G A+++HGD+ Q R++ + +F G+ +LVATD Sbjct: 244 DYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATD 303 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ + V+N+++ D E +VHRIGRT RAG SG+ I F P+E++ + I Sbjct: 304 VAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSIERH 363 Query: 360 LQIKLNWQTPPANSSI--ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 + ++ P + I A + M+ + + ++ + + D+ Sbjct: 364 TRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVDVAA 423 Query: 418 IAVHPAH 424 H Sbjct: 424 ALALLLH 430 Score = 43.3 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 16/137 (11%) Query: 333 ARAGNSGLAI----------SFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEM 382 ARAG GL + SF + + A + + N + E Sbjct: 453 ARAGEKGLDLRGRFKEDRKSSFA---DRKGARGSKKDFAKDFSNERKKFNDGRKAVNQES 509 Query: 383 AT---LCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 ID GK ++PG+++GA+ + GL I + +H H V + + + + K Sbjct: 510 VAQDLFRIDVGKIHGVKPGNIVGAIANEAGLQSRYITGLKIHEDHSTVRLPKGMPKEVMK 569 Query: 440 QLQGGKIKGKTCRVRLL 456 L + G+ + L+ Sbjct: 570 DLTKAWVCGRQLNLTLI 586 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 154/397 (38%), Positives = 237/397 (59%), Gaps = 8/397 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L++ A L ++E+GY T +QA A+P I+ GKDV ++ TG+GKTAAFG+ Sbjct: 1 MTTFNELHI-SEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ + AL++CPTREL QVA ELR+ +++ KI+ + GGQP Q L+ Sbjct: 60 AIEMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLK 119 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR-- 178 I+V TPGR++DHL++ T+ L + +++DEAD ML+MGF + I++++ P+ R Sbjct: 120 RGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSY 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 QT+LFSATWP I I+ Q DP+ +EI S + +EQ +YE K L+ LL+ Sbjct: 180 QTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLN 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + P C++F NTKK + LN+ A +LHGD++Q R + + +F +GS +L+A Sbjct: 240 HYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA-PEEAQRANII 356 TDVAARG+D+ ++LV+NF++ D E ++HRIGRT RAG GLAI+ + + I Sbjct: 300 TDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSELKNI 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + + P + A ++A I+G K A Sbjct: 360 MRYTKTNIKHHALPTS---AQMQAHNRKAYIEGVKLA 393 Score = 53.7 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 381 EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQ 440 E TL GK+ ++ G+++ A++ + G+ IG+I V V V A Sbjct: 449 EAVTLKFSIGKQDGVKTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLVLSN 508 Query: 441 LQGGKIKGKTCRVRL 455 +Q I+G+ V + Sbjct: 509 MQRAHIRGREVSVEI 523 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 152/379 (40%), Positives = 214/379 (56%), Gaps = 4/379 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F + L L +NE G+ +PVQA A+P +L G D+ QA+TG+GKTAAFGL Sbjct: 1 MQTFESFG-LHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + IDA+ + Q LV+ PTRELA QV+ EL L RF K +T+ GG + Q ++ Sbjct: 60 TMSMIDANQNRVQLLVITPTRELATQVSDELYSLGRFC-GIKTVTIYGGSSYSRQIGLIE 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IVATPGR+LD L+ G + A +V+DEAD MLDMGF + I+++ + P RQT Sbjct: 119 KGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT PE I ++ ++ +P + I D IEQ +Y + + + RLL Sbjct: 179 LLFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDA 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P +VFC TKK+ + L VG +A LHGD+EQ R+ + F + +LVAT Sbjct: 239 LEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGL++ + V N+ + +DPE +VHRIGRT RAG G AI+ P E I Sbjct: 299 DVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGK 358 Query: 359 MLQIKLNWQTPPANSSIAT 377 + K+ + P + Sbjct: 359 KVGSKIEHRIVPNLRDVKE 377 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 146/376 (38%), Positives = 222/376 (59%), Gaps = 2/376 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS LN L + E+G+ +P+Q+ A+P IL GKD+ A+TG+GKTAAF + + Sbjct: 5 KFSELN-LSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAI 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + ++ QAL+LCPTREL QV+ + R+L ++ N +++ + GGQ Q +L+ Sbjct: 64 ELLEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKN 123 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P I++ATPGR++DH+++G++ L+ + +V+DEAD MLDMGF + ++ +++ P RQT++ Sbjct: 124 PQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIM 183 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT E I + R Q+ P I++ + P IEQ +YE K L RL+ Sbjct: 184 FSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK V + L G A +LHGDL Q+ RD+ + F NG+ +LVATDVA Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 RG+D+ ++E V N++L D E +VHRIGRT RAG G+A SF ++ I + Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363 Query: 362 IKLNWQTPPANSSIAT 377 IK+ P + Sbjct: 364 IKIEAGKIPTLDDLEE 379 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 156/376 (41%), Positives = 225/376 (59%), Gaps = 2/376 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++ F+ L LP L L ++GY T +P+QAA +P +LAG+DV QA+TG+GKTAAF L Sbjct: 6 ISPFAELG-LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALP 64 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L +ID + TQALVL PTRELA QVA R A LP +L + GGQ + Q SL+ Sbjct: 65 ILAKIDCNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLK 124 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H++V TPGR++DHL++GT+ LD L +V+DEAD ML MGF D ++ +++ P RQ Sbjct: 125 RGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQV 184 Query: 181 LLFSATWPEAIAAISGRVQRDPLA-IEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P AI I+ RDP +T I+Q+++ S K+ L R+L + Sbjct: 185 ALFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVE 244 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++F TK+ + + + L G +A +L+GD+ Q R++ + R +G +LVATD Sbjct: 245 PFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATD 304 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ + VVN+++ D E +VHRIGRT RAG SG AI F P E I Sbjct: 305 VAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERA 364 Query: 360 LQIKLNWQTPPANSSI 375 + + P+ ++ Sbjct: 365 TRQPITQMQLPSTEAV 380 Score = 48.3 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 36/72 (50%) Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 T ++ G+ + +++GA+ + GL+ IG IA+ H +V + + + ++ L Sbjct: 546 FETYRVEVGRDHGVEVRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGMPKDVFRTL 605 Query: 442 QGGKIKGKTCRV 453 Q + G+ ++ Sbjct: 606 QKTWVSGRQLQL 617 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 152/425 (35%), Positives = 233/425 (54%), Gaps = 4/425 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F++L LP L + E GY +P+Q ++P +L GKDV A+TG+GKTAAF L L Sbjct: 6 TGFASLG-LPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L + + + Q LVL PTRELA QVA + ++ N K+ ++ GG FG Q +L+ Sbjct: 65 LARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQ 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P +V TPGR++DH+++GT+ L+ + +V+DEAD ML MGF D +D V+ P RQ Sbjct: 125 GPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIA 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I A++ + R+P I I S A IEQ+++ K L R+ + Sbjct: 185 LFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSE 244 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK+ + V D + G +L+GD+ Q R++ + R G +LVATDV Sbjct: 245 FDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + VVN+++ +D E +VHRIGRT RAG SG AI F P E + + I + Sbjct: 305 AARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVT 364 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + K+ P + + + + + R ++ + +I + + I + Sbjct: 365 RKKIQQIELPTAKEVNAKRRDQFK--VRALEHIEGRDIEIFKKIASEILAEQPALDPIEL 422 Query: 421 HPAHV 425 A Sbjct: 423 AAAFA 427 Score = 52.6 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%) Query: 381 EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQ 440 EM + G K ++PG+++GA+ + ++ IG I ++ V + + + Sbjct: 486 EMRRYRLAVGYKDGVKPGNIVGAIANEADIESKFIGHIEIYDTFASVDLPSGMPEETLTH 545 Query: 441 LQGGKIKGKTCRVRLLK 457 L+ ++ G+ + LK Sbjct: 546 LKKARVCGRPINIEPLK 562 >UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EV19_ARCB4 Length = 454 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 197/447 (44%), Positives = 280/447 (62%), Gaps = 3/447 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS LN L L NL+ L Y T+T +Q +P L KD+ +AKTGSGKT AF L ++ Sbjct: 3 FSELN-LSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIVN 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++ A F+ QAL+L PTRELA+Q+A LR L+R + N K+LTLCGG PF Q SLQH Sbjct: 62 KLKAKEFKIQALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSLQHNA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+VATPGR+L H+++ ++L+ ++T V+DEAD+MLDMGF D I ++I P +RQT+LF Sbjct: 122 HIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTMLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+ + I + + ++P+ EI + I Q+FYE + K L+ L+S +Q + Sbjct: 182 SATYEKNIETFASNILKNPIYKEISDEKEI-LINQKFYEVTPSEKTALIPALISHNQAKT 240 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 ++FCN K C+ + D L ++G L+LH DLEQ+ RD+T+V F+N S +L+ATDVA+R Sbjct: 241 TLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDVASR 300 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII-SDMLQI 362 GL I ++LV+N++L+ D ++H HRIGRTARAG GLAIS E + II I Sbjct: 301 GLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKEKFNNI 360 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 K+ + + + T+ I+GGKK K+R GD+LGAL + GL DIGKI V Sbjct: 361 KIENPKDIKDDISFEINSNFRTVFINGGKKQKLRKGDILGALISEAGLKSDDIGKIDVMD 420 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGK 449 Y AV+ + + +IKGK Sbjct: 421 FCSYAAVKSDKISNIFSTSKSMRIKGK 447 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 564 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 143/386 (37%), Positives = 213/386 (55%), Gaps = 8/386 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L L L E+GY +P+Q +P +L G DV A+TG+GKTAAF L L Sbjct: 63 FTDLG-LDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALS 121 Query: 64 Q------IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 + I+ TQ LVL PTRELA QVA A + + +L + GG P+G Q Sbjct: 122 RMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLA 181 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ ++V TPGR++DHL+KG++ L L LV+DEAD ML MGF++ ++ ++ P S Sbjct: 182 GLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDS 241 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLL 236 +Q LFSAT P +I I+ + DP + + + I Q++ + K+ + R+L Sbjct: 242 KQVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVL 301 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + +VF TKK+ + V D L G +A +++GD+ Q+ R++T+ +G +LV Sbjct: 302 EVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILV 361 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARGLD++ + LVVN+++ D E +VHRIGRT RAG G AI F P E I Sbjct: 362 ATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQI 421 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEM 382 + K+ P ++ + Sbjct: 422 EKATRQKVEPMHMPTAEAVNETRKQR 447 Score = 50.7 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 37/73 (50%) Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 M ++ G+ +++ G ++GAL + G+ G+ IG I + V + + + + +L Sbjct: 532 MVNYKLNVGRSSRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFDRL 591 Query: 442 QGGKIKGKTCRVR 454 + KI G+ +R Sbjct: 592 RDTKIAGEFINIR 604 >UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QWG1_IDILO Length = 474 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 225/453 (49%), Positives = 308/453 (67%), Gaps = 1/453 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN LPPA LT L+E+GY MTPVQ+ +LP IL D V+A TGSGKT AF L LL Sbjct: 23 FNQLN-LPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLA 81 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +++A F QALVLCPTRELA QVA E+R+LA+ + N KILTLCGG+P +Q +SL+H Sbjct: 82 KLEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGA 141 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H++V TPGR+LDHL++ V L L TLV+DEADRML+MGF D+++ +++ P +RQTLLF Sbjct: 142 HVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQTLLF 201 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+P+ IAA++ +V IE A P IEQ FY +++ L+ LL HQP + Sbjct: 202 SATYPKNIAALAEQVTTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLVMNLLGDHQPEN 261 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 C+VFCNTK + + + + L S L+LHG+LEQ+DRDQ +++F+NGSARVL+ATDVA+R Sbjct: 262 CLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIATDVASR 321 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 GLDI L+LV++ +A D + H HRIGRT RAG G+AI+ A ++ + ++ D Sbjct: 322 GLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRLLEDTFAEP 381 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 + + PA S+ L+A M+T+ + GGKK K+RPGD++GALT D L DIGKI + Sbjct: 382 IQVKPAPALSNNRPLKANMSTIQVSGGKKDKLRPGDIVGALTKDNVLSADDIGKIKLEST 441 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 +VAV +A A + KIKGK R ++L Sbjct: 442 FGFVAVNSRLAKHALGLINNNKIKGKKFRAKVL 474 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 144/398 (36%), Positives = 227/398 (57%), Gaps = 5/398 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F LN L L +L+ELGY T +Q A+PA++ GKD+ QA+TG+GKTAAFG+ ++ Sbjct: 7 TFKDLN-LSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV 65 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++++ + QAL+L PTRELA QVA E++ L + L + GG+ Q + L+ Sbjct: 66 EKVNPKQKKVQALILVPTRELAIQVAKEIKELGKN-KKVYTLAVYGGKSISHQINFLKKG 124 Query: 123 PHIIV-ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 ++V TPGR+ D L++G ++LD + V+DEADRML+MGF D I++++ + P RQ L Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNL 184 Query: 182 LFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P+ I ++ + I + + + I+Q Y + + K L +LS + Sbjct: 185 LFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVLSQN 244 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + ++F TK + + + LNE G +A ++HGD Q+ R+ L F G ++LVATD Sbjct: 245 EAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVATD 304 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDIK ++LV+N+ L D E ++HRIGRT RAG G AIS P E ++ I Sbjct: 305 VAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQNIQKK 364 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + + +++ + + ++ + R Sbjct: 365 TKANIEVINEAQEKKLSSAQKDKSSQKERSSRNQTRRR 402 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 163/453 (35%), Positives = 245/453 (54%), Gaps = 12/453 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L P L ++++G+ P+QAA +P +L G+DV + TGSGKT AF + L+ Sbjct: 6 FAELG-LSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALE 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++D L Q LVLCPTRELA QVA E+ LA+F + + GGQ + Q +L Sbjct: 65 RVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGS 124 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +++ TPGR++DH+++GT+ L AL +V+DEADRMLDMGF + I+ ++ P RQ L F Sbjct: 125 QVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFF 184 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I + R RDP I+I++ P +EQ ++E + K+ L RL+ +H Sbjct: 185 SATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFR 244 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFC+TK + + L+ G + LHGDL Q RD+ + +F L+ATDVAA Sbjct: 245 YGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAA 304 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ LE+V N++L D E + HRIGRT RAG SG A +F + +E + + ++ Sbjct: 305 RGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKL 364 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAK-MRPGDVLGALTGDIGLDGADIGKIAVH 421 L P+ + + I +AK +P D + D G DI +H Sbjct: 365 DLRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRMIDRLLDQGYASTDICSALIH 424 Query: 422 ---------PAHVYVAVRQAVAHKAWKQLQGGK 445 PA V+ + + + A W + + Sbjct: 425 LLQGGSTGTPAAVHESAKASAAAPDWARRKSAP 457 Score = 51.8 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 340 LAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 A SF P + A+ + + K P + E M+ + ++ G++ ++ P D Sbjct: 475 KASSFAKPTPDKTADGLPALAGRKKQKYARPPRT---GAEPGMSPVVLNVGREHQVTPAD 531 Query: 400 VLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 ++G + G L + +G I +H H V V + K+L G ++KG Sbjct: 532 IVGKIAGVTRLAASIVGAIDIHERHTLVDVAENAVPVVIKKLAGIRLKG 580 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 144/382 (37%), Positives = 212/382 (55%), Gaps = 2/382 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L+ L + GY TP+QA +P +L G+DV Q++TG+GKTAAF L +L Sbjct: 306 FRDLD-LRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILS 364 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++D + Q LVL PTRELA QVA + L ++ + GGQ + Q L+ Sbjct: 365 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 424 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGR++DH+++GT+ L +L+ LV+DEAD ML+MGF + + V+ +P RQ LF Sbjct: 425 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALF 484 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ I I+ DP I I S + Q+ S + KI L R+L + + Sbjct: 485 SATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETD 544 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VF TK +V + L++ G SA++L+GD+ Q+ R++T+ + G VLVATDVAA Sbjct: 545 GVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAA 604 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + V NF+L D E +VHRIGRT RAG SG AI F + ++ I + + Sbjct: 605 RGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTTKQ 664 Query: 363 KLNWQTPPANSSIATLEAEMAT 384 + P + I Sbjct: 665 PIEIIDIPTVADINEARVRRFK 686 Score = 56.4 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 42/85 (49%) Query: 370 PANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAV 429 P + ++ M +D G + ++PG+++GA+ + G+DG IG I + +H + + Sbjct: 777 PKGRPLTPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDL 836 Query: 430 RQAVAHKAWKQLQGGKIKGKTCRVR 454 + + ++ L+ + GK + Sbjct: 837 PEGMPSDIYQTLRKTWVAGKRLNLE 861 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 162/421 (38%), Positives = 225/421 (53%), Gaps = 6/421 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ N+ + NL +LG+ TP+Q A+P +LAG D+ QA+TG+GKTAAFGL LL Sbjct: 57 FTDFNLKSD-LVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLN 115 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID S QALVL PTRELA QV L + +L + GG + Q L+ Sbjct: 116 NIDFSKKCVQALVLAPTRELAQQVGDALATYS-GDDGRNVLVVYGGSSYQAQVGGLRRGA 174 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGRLLD +++G++ LD L TLV+DEAD ML MGF D I+ ++ P RQT+LF Sbjct: 175 RVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLF 234 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT + +I+ R P +I I + IEQ++Y ++ KI + R+ + Sbjct: 235 SATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVE 294 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F T+ + + L G +A L GDL Q R + L RF G +VLVATDVAA Sbjct: 295 SALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAA 354 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLDI + V N++L DPEV+VHRIGRT RAG SG AIS + I Sbjct: 355 RGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGK 414 Query: 363 KLNWQTPPANSSIATLEAE--MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 KL P I + L + + +++ AL + G+D D+ A+ Sbjct: 415 KLIKGELPTVEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALV-EQGMDPLDVAAAAL 473 Query: 421 H 421 Sbjct: 474 K 474 Score = 44.9 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 + +M L +D GKK + ++ +L+ G+ ++GKI ++ H + V + + K Sbjct: 555 DKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSRELGKIRINETHSSIDVPKGLVDKML 614 Query: 439 KQLQGGKIKGKTCRV 453 +I K + Sbjct: 615 SHNGSYRISKKAVNL 629 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 174/477 (36%), Positives = 257/477 (53%), Gaps = 25/477 (5%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F + + L ++ LGY T VQ +PA+L+GK++ VQ++TGSGKTA+FG+ + Sbjct: 4 TFKNYGI-DDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPIC 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q++ + Q LVL PTRELA Q+ +L L RF K+ L G F Q L+ Sbjct: 63 HQVEWKKRKPQVLVLAPTRELAIQIQEDLFNLGRF-KRLKVEALFGRSSFEKQAQRLKEM 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+VATPGRLLDH+ + TV L + TLV+DEAD M +MGF D I +I P Q LL Sbjct: 122 THILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT PE + + ++P I+I++ + I++++Y K+ LL+ +L P Sbjct: 182 FSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITENP 241 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S ++FCNTK+ ++V + + ++G +LHG +EQR R + L F +G R LVATDVA Sbjct: 242 DSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATDVA 301 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDI + LVVNF++ + E + HR+GRTAR G A++F +P E + N+I + Sbjct: 302 ARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIINDTD 361 Query: 362 IKLNWQTPPAN----------------------SSIATLEAEMATLCIDGGKKAKMRPGD 399 +L P + E+ + I+ GKK KMRP D Sbjct: 362 HELQKVVKPGQSLVDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKKTKMRPVD 421 Query: 400 VLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 V+GAL G++ DIG I++ +V + L+ IKG+ +V Sbjct: 422 VVGALCSIEGMNAEDIGVISIVDVSTFVEILNGKGDLVLNALKTMPIKGRPRKVNRA 478 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 149/386 (38%), Positives = 214/386 (55%), Gaps = 9/386 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F +L L P L + E GY TP+Q A+PA+L G+D+ A+TG+GKTA F L LL Sbjct: 2 SFDSLG-LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 63 QQI------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 Q + +AL+L PTRELA Q+ +R +++L N + L + GG Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQM 119 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ ++VATPGRLLD + V LD + LV+DEADRMLDMGF I V+ PA Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRL 235 RQ LLFSAT+ + I A++ ++ +PL IE+ + + Q + K K LL + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + +VF TK + + LN+ G + ++HG+ Q R + L F +G RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARGLDI+ L VVN+EL PE +VHRIGRT RA +G A+S +E + Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAE 381 I +L+ ++ P +++AE Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKAE 385 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 562 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 156/398 (39%), Positives = 215/398 (54%), Gaps = 14/398 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L + P + LN Y T +Q A+P +AG+D++ A+TG+GKTAAF L LL Sbjct: 2 SFEDLGLAEP-LVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60 Query: 63 QQIDASLFQ-------TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 ++ + Q +ALVL PTRELA Q+ +RR R LT+ GG Q Sbjct: 61 DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQ-NSLTIYGGVSQVPQ 119 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L +++ATPGRL D +Q+G ++L + V+DEADRMLDMGF I +I P Sbjct: 120 VKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLP 179 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQR 234 +QTLLFSAT P I ++ ++ DP+ I I+ A I Q Y +K K LL Sbjct: 180 QQKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLAS 239 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +L + + VVF TK C L + G ++HG+ Q R +TL F NG +V Sbjct: 240 VLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQV 299 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATDVAARGLD+ + V+N++L +PE +VHRIGRT RAG SG+AISFC E+ Sbjct: 300 LVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLLR 359 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 + +L K+ P N + A + DGG K Sbjct: 360 DVQRILGKKI----PVENEMPDGIPGLPANIDRDGGAK 393 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 138/377 (36%), Positives = 201/377 (53%), Gaps = 8/377 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT FS ++ P L L++ GY T TP+QA A+P ++ G D+ A+TG+GKTAAF L Sbjct: 1 MTKFSDFDLASP-VLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALP 59 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 LL + + LV+ PTRELA Q+A + + L ++L + GG P Q Sbjct: 60 LLHHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLS-LRVLKVFGGVPIRKQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L ++VATPGRL+D +++G V L + LV+DEAD+MLD+GF + + P Sbjct: 119 MRDLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQR 234 RQTL FSAT P ++ ++ + +P + I + Q + K PLL Sbjct: 179 KERQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLV 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L +VF TK V L G ++HG+ Q R++ L F NG ++V Sbjct: 239 NLQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKV 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ + V N+E+ PE +VHRIGRTARAG G AISF + +E + Sbjct: 299 LVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLL 358 Query: 355 IISDMLQIKLNWQTPPA 371 I +++K+ P Sbjct: 359 DIQRQIRMKIPIVDLPE 375 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 164/439 (37%), Positives = 234/439 (53%), Gaps = 7/439 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +LN L PA L + ELGY T + +QA +P +L KDV A+TG+GKTAAF L LL Sbjct: 6 TFESLN-LSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID S+ Q Q LVL PTRELA QVA + A+ + ++L L GGQ + +Q +L+ Sbjct: 65 NNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRG 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +IVATPGRL+DH+ +GT+ DAL LV+DEAD ML MGF D ++ ++ P +QT L Sbjct: 125 AQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I IS + +P + I + + + +EQ F+ S K + R L Q Sbjct: 185 FSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAS-IHKNKAIVRFLEAEQY 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VF T+ D + + L G SA L+GD+ Q+ R++T+ R +G V++ATDVA Sbjct: 244 EGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ L LV+N+++ D E +VHRIGRT RAG +G AI F E I Sbjct: 304 ARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTN 363 Query: 362 IKLNWQTPPANSSIAT--LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + P + +EA A L + K +V + + L D+ Sbjct: 364 SDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANMAQKLELSAEDLAGAL 423 Query: 420 --VHPAHVYVAVRQAVAHK 436 + + V + Sbjct: 424 LCLAQQQSPIKVEEVKIQP 442 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 149/419 (35%), Positives = 242/419 (57%), Gaps = 3/419 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L L P + + +GY TP+Q +P ++ GKD+ QA+TG+GKTAAFG+ ++ Sbjct: 3 FKDLG-LSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIE 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +D S+ QTQ+L+LCPTRELA QV EL++L++F ++L + GG+ Q L+ Sbjct: 62 HVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+V TPGR++DHL + T++ L+ +++DEAD ML+MGF + I+ ++ P RQT+LF Sbjct: 122 HIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT I A++ R Q +P I+I+ + + +EQ +Y + K ++ +++ L+ Sbjct: 182 SATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQ 241 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++FCNTK+ + V D L G + +SLHGD QRDR + + +F G A +LVATDVAA Sbjct: 242 LMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAA 301 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ ++ V+N+++ D E +VHRIGRT RAG G + + +E + I + Sbjct: 302 RGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKA 361 Query: 363 KLNWQTPPANSS-IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + P +A + ++AT +K ++ L + G+ I + Sbjct: 362 TIEKAETPTRQELVAYKKDKLATRITTELEKPNIKIWSDLLEEYKEKGITADQIAIALL 420 Score = 72.6 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 44/77 (57%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 +A MA L ++ G+ ++ PGD++GA G+ + G+ IG+I + + +V + + + Sbjct: 499 DASMARLFVNVGRIDRISPGDIVGAFAGEANIKGSQIGQIDIFDKYSFVELPHDLVDQVM 558 Query: 439 KQLQGGKIKGKTCRVRL 455 ++ KIKGK+ + + Sbjct: 559 DGMRNNKIKGKSINIEI 575 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 158/470 (33%), Positives = 249/470 (52%), Gaps = 27/470 (5%) Query: 12 PAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ 71 + L+ L Y+ TP+Q +P L GKD+ ++KTGSGKTAAF + + + I Sbjct: 13 EEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICESIVWEENL 72 Query: 72 TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPG 131 QALVL PTRELA QV E+ + R + K+ + GG PF Q +L+ HI+V TPG Sbjct: 73 PQALVLEPTRELAYQVKDEIFNVGR-MKRVKVPVVFGGFPFDKQALTLKQKSHIVVGTPG 131 Query: 132 RLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 R+LDH + GT+ + +++DEAD MLDMGF D + ++ + P + +LFSAT EA+ Sbjct: 132 RVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFSATMGEAL 191 Query: 192 AAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT 250 A++ P+ +++ D T+ + IEQ + + K L R+L + P++ ++FC T Sbjct: 192 YALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNNPTNAMIFCGT 251 Query: 251 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 310 ++ + + L + LHG ++Q+ R T+ F G R L+ATDVAARG+D + Sbjct: 252 REMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDVAARGVDFDDI 311 Query: 311 ELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPP 370 V+N++L E +VHRIGRT R G SG AISF EE + ++I + TPP Sbjct: 312 THVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFTGTPIEIVTPP 371 Query: 371 ANSSIAT------------------------LEAEMATLCIDGGKKAKMRPGDVLGALTG 406 + + + ++ L I GG+K+K+R +V+G ++G Sbjct: 372 SEEEVREFLYKEKFNEAQQKKQERKKKKGDVFQKDIMKLTISGGRKSKLRTCEVVGTISG 431 Query: 407 DIGLDG-ADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 G++G DIG I + + YV + + +L +KGK +V + Sbjct: 432 IEGVNGKEDIGVIDIRDSITYVEILNGKGNLVLNELPKRTMKGKCRKVSI 481 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 148/384 (38%), Positives = 220/384 (57%), Gaps = 3/384 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F LN+ P+ + + ++G+ TP+Q +P G+D+ QA+TG+GKT AFG+ Sbjct: 1 MALFKDLNI-QPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+ QALVL PTRELA QVA EL +L + + K L + GGQ Q +L+ Sbjct: 60 CVEQVVVEEKHPQALVLTPTRELAIQVAEELNKLGQ-VKGIKALPIYGGQEITRQITALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 P IIVATPGR +DH+++ T+ + L +V+DEAD ML MGF + I+ +++ P RQT Sbjct: 119 KRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P + I+ R P++I + + + IEQ++ S K K L LL + Sbjct: 179 LLFSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLDME 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P ++F TK+ + ++L+ G + LHGD++Q RDQ + +F GS V+VATD Sbjct: 239 TPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V+NF+L D E +VHRIGRT RAG G++ SF +E I + Sbjct: 299 VAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEES 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMA 383 + K+ P + + A Sbjct: 359 TRQKMKQVDAPTLADAMRGRHKQA 382 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 141/396 (35%), Positives = 213/396 (53%), Gaps = 4/396 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 + F L L + L L + G+ TP+Q +P L G+ D+ QA+TG+GKT AFG Sbjct: 4 LAKFKALG-LSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGA 62 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++++I + QA+VL PTRELA QV+ EL L + I+ + GGQ Q L Sbjct: 63 PIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSL-KGDKKLHIVPIYGGQSMTQQFRML 121 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR++DHL++ +++L+ + V+DEAD ML+MGF D I ++++ ++ Sbjct: 122 KSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKR 181 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 L FSAT P+ I I + ++ + I D + EQ ++E K L R++ + Sbjct: 182 MLFFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDI 241 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VFC TK D + L + G +A +LHGDL QR+R++ L RF +LVAT Sbjct: 242 EDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVAT 301 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+DI L V+N+ L DPE +VHRIGRT RAG G AI+F E +R I Sbjct: 302 DVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIKK 361 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 + + P + + ++ K + Sbjct: 362 TSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNE 397 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 156/384 (40%), Positives = 219/384 (57%), Gaps = 4/384 (1%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT +F L L L + ++G+ +P+Q A+P +LAG D QA+TG+GKTAAFGL Sbjct: 1 MTASFEELG-LSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ++ TQAL+LCPTRELA QVA EL +LA IL + GGQP Q +L Sbjct: 60 PILDKLTPERN-TQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 ++V TPGR++DHL++GT+ L + V+DEAD MLDMGF + I+ ++ PAS Q Sbjct: 119 AKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQ 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 +LFSAT P AI +S R R+P + + +P IEQ +YE K+ L RLL Sbjct: 179 RVLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDS 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VFC+TK+ V L + G + SLHG+L Q RD+ + RF VLVAT Sbjct: 239 RAFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ ++ V+N+++ D E +VHRIGRT RAG G A +F E + I Sbjct: 299 DVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIR 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEM 382 + ++ P+ + + Sbjct: 359 CTRARITEGRLPSLRDVDNIRTSR 382 Score = 41.8 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 368 TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYV 427 P A + M L ++ G K P +++GA+TG+ G+ IG I+++ V Sbjct: 468 KPGARPQRRENDGPMTRLHLNVGHTHKATPRELVGAITGETGISSRHIGAISINKNFCVV 527 Query: 428 AVRQAVAHKAWKQL-QGGKIKGKTCRVRL 455 + Q +A L +G I G ++ Sbjct: 528 EIAQEMADDVLAVLNRGVFIAGMRVAAKV 556 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 153/409 (37%), Positives = 225/409 (55%), Gaps = 6/409 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAIL-AGKDVRVQAKTGSGKTAAFGL 59 M F L V P L + E+GY PVQ +P +L G DV A+TG+GKTAAFGL Sbjct: 1 MKTFEELGV-SPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q++D QAL+LCPTREL Q+AG+L ++++ KIL + GG Q L Sbjct: 60 PLIQKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRML 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + HIIVATPGRL+D +++ L+ + +VMDEAD ML+MGF+D+I+ ++ P R Sbjct: 120 KTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TL+FSAT I+ I+ + D I I + + + Y +K K L+R+ Sbjct: 180 TLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRIADY 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+K+ Q + D L + G +A SLHG+L Q RD + +F ++LVAT Sbjct: 240 YPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N+ L D E + HR GRT RAG +G++I+ E + I Sbjct: 300 DVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREIER 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGD 407 ++ K P+ I ++ L ID +K K+ ++ L G Sbjct: 360 IINKKFIMGEMPSGKQICE--QQLIKL-IDDIEKVKVNDEEIESFLPGI 405 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 234/425 (55%), Gaps = 7/425 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN+ L +++LGY +P+Q ++P +L G D+ +++TGSGKTAAF + ++ Sbjct: 2 KFNELNIGNE-ILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + I+A+ TQAL+LCPTREL QV+ E+ +L ++ KIL++ GG Q SL+ Sbjct: 61 ENIEANGI-TQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLKKG 119 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+V TPGRL+D +++ + LD L T+V+DEAD M DMGF D + ++ +RQT Sbjct: 120 VEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCF 179 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT I S Q +P ++I S + + I+Q + + K L RLL +H+ Sbjct: 180 FSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLLEIHKA 239 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VFCNTK+ + ++L + LHGDL+Q RDQ + +F N + ++LVATD+A Sbjct: 240 NLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVATDIA 299 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ +++V N++L E +VHRIGRTARAG SGL+ S + + R I + + Sbjct: 300 ARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIENYTK 359 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAK---MRPGDVLGALTGDIGLDGADIGKI 418 + P + I R D+L L + G D I ++ Sbjct: 360 ANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLM-EKGYDPFMICQV 418 Query: 419 AVHPA 423 + Sbjct: 419 LLKDK 423 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 145/397 (36%), Positives = 218/397 (54%), Gaps = 3/397 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + + E GY T +Q+ A+P +L D+ Q++TG+GKTAAFGL +L Sbjct: 18 TFKEL-ELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76 Query: 63 QQIDA-SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +T +L+LCPTREL QVA E+R +++ I + GG P Q L+ Sbjct: 77 SLTQPGDKKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKR 136 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+VATPGRL+DH+++ T+ LD +V+DEAD ML+MGF + I+++ F P RQ Sbjct: 137 GADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFA 196 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P+ I +S + +P I + + + I+Q +Y S+ K+ L +LL LH+ Sbjct: 197 FFSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHK 256 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S ++FCNTKK + LN+ G AL LHGD++Q R + RF G VL+ATDV Sbjct: 257 TSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDV 316 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ S+++V+N+++ + E +VHRIGRT RAG GLAI+ + + I + Sbjct: 317 AARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLS 376 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + P + L + I + Sbjct: 377 NSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGK 413 Score = 48.7 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 41/109 (37%) Query: 348 EEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGD 407 +E I+ M+ + + E++ + + G + + ++ A+ Sbjct: 429 QEEIIVAFINKMISESNLEAIKVSKQKDVKNKGEISRIGLSVGDRDGIAAAHLVSAIATA 488 Query: 408 IGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 G+ G DIG+I + V V + A +L KI K V ++ Sbjct: 489 SGIRGKDIGRIKIDDNESTVEVPREFAQDIINKLSDTKINSKDVTVTMV 537 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 147/379 (38%), Positives = 213/379 (56%), Gaps = 11/379 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + E GY T TP+QA A+P +L+G+DV A+TG+GKTA+F L ++ Sbjct: 102 TFDQFG-LAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPII 160 Query: 63 QQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q++ + +AL+L PTRELADQVA + A+ P + + GG Sbjct: 161 QRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDMNP 219 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L+ I++ATPGRLLDH+Q+ T +L + LV+DEADRMLDMGF + ++ Sbjct: 220 QMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 279 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQ 233 P RQTLLFSAT+ I ++ R+P IE+ ++A + Q Y+ + K + Sbjct: 280 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVV 339 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 +L+ +VFCN+K + + G A ++HGD Q +R Q L F G Sbjct: 340 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 LVATDVAARGLDI L V+NF+L ++ E +VHRIGRT RAG SG A+S C+P E ++ Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459 Query: 354 NIISDMLQIKLNWQTPPAN 372 I +++ L+ +T + Sbjct: 460 ADIEKLIKRTLSLETLELD 478 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 559 bits (1441), Expect = e-158, Method: Composition-based stats. Identities = 155/375 (41%), Positives = 224/375 (59%), Gaps = 5/375 (1%) Query: 1 MT---AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAF 57 MT F+ L LP L +++LG+ T +P+Q + +P +L G DV A+TGSGKTAAF Sbjct: 1 MTDKITFNDLG-LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAF 59 Query: 58 GLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 L LL QID S Q LV+ PTRELA QVA ++ T+I+TL GGQ + +Q Sbjct: 60 ALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 +L+ ++V TPGR+LDH+++GT++L L +V+DEAD ML MGF D ++ V+ P + Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLL 236 QT LFSAT PE I I+ R DP ++I + + P I+Q + K L R L Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + ++F TK + + L + G + +L+GD+ Q+ R+QTL R NGS ++V Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARG+DI+ + LVVN+++ D E +VHRIGRT RAG SG A+ F P E + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 357 SDMLQIKLNWQTPPA 371 +++ +N P Sbjct: 360 EHLMKKGINEVELPN 374 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 154/381 (40%), Positives = 225/381 (59%), Gaps = 2/381 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F L L L + ELG+ +P+Q+ A+P +L G+DV QA+TG+GKTAAFGL Sbjct: 4 VESFKDL-PLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLP 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQ+IDA+ QALVLCPTRELA QVA L LA+ L +IL++ GGQP Q +L+ Sbjct: 63 LLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALR 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+LDH+ +GT+ L + V+DEAD MLDMGF + I+ ++ P Q+ Sbjct: 123 RGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQS 182 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 FSAT P+ I ++ R R+P + + + EQ ++E ++ + R+ + Sbjct: 183 AFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAY 242 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + AL + G A +LHGDL Q R++ + RF G VLVATD Sbjct: 243 IPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATD 302 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ ++ V+NF+L DPE +VHRIGRT RAG +G A SF A + + I + Sbjct: 303 VAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQRV 362 Query: 360 LQIKLNWQTPPANSSIATLEA 380 +++ + P + + Sbjct: 363 TGSRIDRRAMPTAADASRART 383 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 160/462 (34%), Positives = 239/462 (51%), Gaps = 12/462 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F++L LP NL LGY T TP+QA +P +L G+DV A+TG+GKTAAF L + Sbjct: 9 SRFNSLG-LPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPI 67 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L ID + QALVLCPTRELA QVA R R + +IL++ GG Q SL+ Sbjct: 68 LANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLRE 127 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HI+VATPGRLLDH+++ ++ L +N +V+DEAD ML MGF D +D ++ P R+ Sbjct: 128 GTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVA 187 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ + I+ + +P I + + IEQ ++ K+ L+RLL+ Sbjct: 188 LFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFED 247 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF T++ + + L + G A L+GD++Q+ R +T+ +G+ VLVATDV Sbjct: 248 TEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDV 307 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V+N+++ +D E +VHRIGRT RAG G AI F P E + I + Sbjct: 308 AARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLT 367 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKI 418 + + P+ +I E I M+ +++ L D + Sbjct: 368 RQSIPEIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIAVALA 427 Query: 419 AVH--------PAHVYVAVRQAVAHKAWKQLQGGKIKGKTCR 452 + P H + + + K K R Sbjct: 428 GMLHSPGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERR 469 Score = 53.0 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 36/67 (53%) Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 M ++ G+K ++PG+++GA+ + G++G IG I + + + + + K L Sbjct: 507 MERFRVEVGRKHGVKPGELMGAIANEAGIEGQYIGMINILEECSTIDLPEGIPKSILKHL 566 Query: 442 QGGKIKG 448 + ++KG Sbjct: 567 KKTRVKG 573 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 153/383 (39%), Positives = 211/383 (55%), Gaps = 7/383 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS+L + P Q + E GY T +P+QA A+PA+L GKDV A+TG+GKTA F L LL Sbjct: 2 SFSSLGLSLPIQ-KAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 63 QQID----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + A Q +ALVL PTRELA QV+ + ++LP + + GG P Q Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQK 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+H ++VATPGRLLD +Q+ V + L LV+DEADRMLDMGF I ++ PA R Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLS 237 Q L+FSAT+ + I ++ + P+ I + +A ++Q K LL +L+ Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIK 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 +VF TK + +L + SA ++HG+ Q R + L F +G RVLVA Sbjct: 240 QEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLDI L VVNF+L PE +VHRIGRT RAG SG A+S + EE + I Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIE 359 Query: 358 DMLQIKLNWQTPPANSSIATLEA 380 ++ L Q L Sbjct: 360 RLINRVLERQEIEGFGPAHALPE 382 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 557 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 239/426 (56%), Gaps = 12/426 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L P + LGY + T +Q+ +P +LAG+D+ QA+TG+GKTAAF L +L Sbjct: 10 GFDALG-LSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPML 68 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++D L + Q LVL PTRELA QVA +R A L +L + GGQ +G+Q L+ Sbjct: 69 SRLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKRN 128 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P +IV TPGR++DH+++GT++LD++ LV+DEAD ML+MGF++ ID + APA RQ L Sbjct: 129 PQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVAL 188 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI ++ DP+ ++I + + + IEQ + K+ +L R++ L Sbjct: 189 FSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMELEPF 248 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++F TK + D L G +A L+GD+ Q R++T+ R G VLVATDVA Sbjct: 249 DGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDVA 308 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + VVN+++ DP +VHRIGRT RAG +G AI P E I +++ Sbjct: 309 ARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIERVIR 368 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD------VLGALTGDIGLDGADI 415 + PP+ ++++ + G + D +L ++ + ++ DI Sbjct: 369 RPIPSMEPPSAAALSESRIDR----FIGEIRKAQSEQDLDFFYRLLARISQEQEIEMLDI 424 Query: 416 GKIAVH 421 + Sbjct: 425 AAALAY 430 Score = 57.2 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 347 PEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTG 406 E R + + + + P A++ + I+ G + + P +++GA+ Sbjct: 488 DERRPRFDRAERSERPERPERGQPRRDD-----ADLTSYRIEVGHQHGVSPREIVGAIAN 542 Query: 407 DIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 + GL+G IG+I + H V + + + ++ ++ L+ ++G+ R+ Sbjct: 543 ESGLEGRYIGRIDIRDDHSVVDLPKGMPNEVFQHLKRVYVRGQALRI 589 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 144/395 (36%), Positives = 226/395 (57%), Gaps = 4/395 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ LN LP L+ + E+G+ T TP+Q A+P +L G+D+ A+TG+GKTAAFGL Sbjct: 4 MTTFADLN-LPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLP 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L ID QA+VL PTRELA Q A + A +P K++T+ GG + Q L+ Sbjct: 63 MLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLK 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA--SR 178 ++V TPGR++D ++KG + L+ ++ LV+DEAD ML MGF++ ++ + P R Sbjct: 123 SGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKR 182 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLS 237 T LFSAT P+ I ++ + DP+ IE+ + I Q + K K+ L R+L+ Sbjct: 183 ITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLA 242 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF T+ D V + G +A ++ GD+ Q +R++ + R +GS VLVA Sbjct: 243 TRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVA 302 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARGLD++ + LV+NF++ + E +VHR+GRT RAG +G +++F P+E R I Sbjct: 303 TDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQIE 362 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 + K+ P+ ++ A + + Sbjct: 363 KLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIE 397 Score = 58.7 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 44/72 (61%) Query: 383 ATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQ 442 ++ GK+ ++PG ++GA+TG+ G++GAD+G+I ++P V + ++ KA ++ Sbjct: 493 RRYRVEVGKRDGVKPGAIVGAITGEGGVNGADLGRIDIYPTFSLVELSGELSEKAASKIS 552 Query: 443 GGKIKGKTCRVR 454 + G+ R++ Sbjct: 553 KAFVSGRQLRIK 564 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 151/429 (35%), Positives = 235/429 (54%), Gaps = 11/429 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F + L +L+ GY TP+Q AA+P ++ G+D+ QA+TG+GKTAAF L L Sbjct: 51 NGFLDFG-FNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL 109 Query: 62 LQQI-DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++ D + LV+ PTRELA QVA + + N K + + GG + Q +L+ Sbjct: 110 IEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALK 169 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR++DH+++GT ++++N LV+DEAD ML+MGF + I+ +I P ++Q Sbjct: 170 RKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQM 229 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P I I+ + DP I I S I Q+F K+ L+R+L L+ Sbjct: 230 VLFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELN 289 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++F TK ++ +AL +G S L+GD+ Q R+ T+ R G +LVATD Sbjct: 290 N-EGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATD 348 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ ++LVVN++ +D E + HRIGRT RAG SG AI F E + + Sbjct: 349 VAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENS 408 Query: 360 LQIKLNWQTPPANSSIATLEAEM-------ATLCIDGGKKAKMRPGDVLGALTGDIGLDG 412 + K+ P+N I E ++L + ++ K DVL L +D Sbjct: 409 TRTKIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMDD 468 Query: 413 ADIGKIAVH 421 ++I A++ Sbjct: 469 SNIAMAAIN 477 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 149/419 (35%), Positives = 235/419 (56%), Gaps = 3/419 (0%) Query: 5 STLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ 64 + L L P L ++++G+ +P+QAA +P +LAG DV Q+ TGSGKTAAF L +++ Sbjct: 1 AELG-LSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIER 59 Query: 65 IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 +D L Q L+LCPTRELA QVA E+ +LA F + + GGQ + Q +L Sbjct: 60 VDTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQ 119 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 +++ TPGR++DH+++GT+ LD L+ +++DE DRMLDMGF D I+ +++ P RQ+L FS Sbjct: 120 VVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFS 179 Query: 185 ATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 AT P I + R +P ++I++ + P ++Q ++E + K+ +L RL+ L+ Sbjct: 180 ATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRY 239 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 ++FC+TK + + L+ G + LHGD+ Q R +T+ +F L+ATDVAAR Sbjct: 240 GIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAAR 299 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 GLD+ LE+V NF+L D E + HRIGRT RAG G A +F + E + + ++ Sbjct: 300 GLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLD 359 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKA-KMRPGDVLGALTGDIGLDGADIGKIAVH 421 + + P+ + + + A K P D + G DI +H Sbjct: 360 IRRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRFIDRLLEQGYPSTDIIAALLH 418 Score = 46.8 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 378 LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKA 437 E + + G+K + P D++G + G L A +G I +H H + Sbjct: 524 REPGFTPVFFNVGRKQLITPADLVGKVAGVTRLPAAVVGAIDIHQRHTLADIADEHVDLV 583 Query: 438 WKQLQGGKIKGKTCR 452 K+L G +IKG++ + Sbjct: 584 VKKLTGIRIKGESLQ 598 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 143/381 (37%), Positives = 214/381 (56%), Gaps = 5/381 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILA-GKDVRVQAKTGSGKTAAFGLGLL 62 F L L + + GY T +Q LP L+ KD+ QA+TG+GKTAAFG+ LL Sbjct: 20 FEDFG-LSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLL 78 Query: 63 QQIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ID + +A+++ PTRELA Q+ EL+ L + KI TL GGQ Q L+ Sbjct: 79 ERIDFKANKFVKAIIVTPTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEK 137 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR++DHL + T+ L + LV+DEADRMLDMGF D + ++I+ +++T Sbjct: 138 GVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTF 197 Query: 182 LFSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I I+ + ++ + + + EQ ++E K K+PLL R++ ++ Sbjct: 198 LFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNP 257 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VFC TK + + L ++G +A LHGD Q R++ L +F R+LV TDV Sbjct: 258 DFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDV 317 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+DI L V+N+ + DPE +VHRIGRT RAG G AI+F ++ + Sbjct: 318 AARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFA 377 Query: 361 QIKLNWQTPPANSSIATLEAE 381 + K+ + P I + E Sbjct: 378 KAKIIKDSIPQVEDILNRQLE 398 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 150/430 (34%), Positives = 219/430 (50%), Gaps = 17/430 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L L L +N+ GY+ TP+QA +P+ILAGKDV A+TG+GKTA F L LL Sbjct: 6 TFAQLG-LSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 63 QQID--------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 ++ + +AL++ PTRELA Q+ +R+ ++L + + GG Sbjct: 65 YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTAVVFGGINIEP 123 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q +LQ I+VATPGRLLD +++ V+ LV+DEADRMLDMGF I V+ Sbjct: 124 QIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALL 183 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQ 233 RQ+L+FSAT+ I ++ + + P+ IE + + I + K LL Sbjct: 184 SPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLL 243 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L+ ++F TK + L+ SA+++HGD Q+ R Q L F +G + Sbjct: 244 HLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQ 303 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATDVAARG+DI+ L V+N+EL +PE +VHRIGRT RAG+ G AIS + E + Sbjct: 304 ILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKELL 363 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I +L KL IA +AE + K G + G + + Sbjct: 364 ANIEKLLNAKLET------EQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMENGSEKS 417 Query: 414 DIGKIAVHPA 423 K P+ Sbjct: 418 RSEKHRKLPS 427 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 158/454 (34%), Positives = 253/454 (55%), Gaps = 9/454 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L +L ++ L +LG+ TP+Q A+P ++ G D+ QA+TG+GKT AFG+ +++ Sbjct: 5 FNDLPILDTTKV-ALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVE 63 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 + D SL QTQ L+L PTREL +QV E+ +L +F P ++ T+ GG+ + Q L P Sbjct: 64 KTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDRKP 123 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HIIVATPGR++DH+ +GTV L + TL +DEAD ML MGF D I+ +++ P +RQT+LF Sbjct: 124 HIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLF 183 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I I+ Q++P I+I++ + I Q ++ K K LL+RLL PS Sbjct: 184 SATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFENPS 243 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++F NTK + ++L + G +A +LHGDL+Q R + RF + +LVATDVAA Sbjct: 244 TAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATDVAA 303 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ +E++VN++L E++VHRIGRT RAG G A +F P + + ++++ + Sbjct: 304 RGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLAHYTKA 363 Query: 363 KLNWQTPPANSSIAT------LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIG 416 + P + L + + ++ + D L+ Sbjct: 364 DIKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQLLNYLLDS 423 Query: 417 KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT 450 + + + + A + + +G KG+ Sbjct: 424 MLPTKKTYETIEIIPEKASRRSQDERGND-KGRK 456 >UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostridium RepID=B1V1Y2_CLOPE Length = 453 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 155/477 (32%), Positives = 248/477 (51%), Gaps = 48/477 (10%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN L + LN LGY + VQ A++P +L G+D+ V+++TGSGKTA+FG+ + Sbjct: 2 KFNELN-LSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++I+ + Q LVL PTRELA QV EL + R + + + G QPF Q L+ Sbjct: 61 EKINIEEKKVQCLVLTPTRELAIQVKDELSNIGR-IKKVRCAAIFGKQPFNEQIRELKQR 119 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+V TPGR+ DH+++GT+ L +N +V+DEAD+ML MGF D I D++ ++ T L Sbjct: 120 VHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTAL 179 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 FSAT+ + I I R+P+ +E+ S ++ +I + Sbjct: 180 FSATFSKEIEEICEEYMRNPMLLEVKSK------------VFNRDRIEESAIEIEE---- 223 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 K ++V L + G + LHGD+EQ+ R + + F + +VLV TD+AA Sbjct: 224 --------KNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 275 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+ + S+ELV+N+E+ + E +VHRIGRT RAG G AI+F E + + + + Sbjct: 276 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 335 Query: 363 KLNWQTPPANSSI----------------------ATLEAEMATLCIDGGKKAKMRPGDV 400 ++ + P++ + + ++ + ++GGKK K+R D+ Sbjct: 336 EIRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKKKIRAFDI 395 Query: 401 LGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +G + GL G DIG I V YV + K K + IKGK +++ + Sbjct: 396 VGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKIQKAR 452 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 155/395 (39%), Positives = 226/395 (57%), Gaps = 3/395 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F+ LN L P+ + ++E+G+ TP+Q A+P + GKD+ QA+TG+GKTAAFG+ Sbjct: 1 MVKFTELN-LTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +++ I + Q LV+ PTRELA QVA EL R+ + + + + + GGQ F Q +L+ Sbjct: 60 MVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALE 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PHI+V TPGRLL+H+++ V + V+DEAD+MLDMGF D + +++ P RQT Sbjct: 119 ELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT + ++ + +DP IE + +P Q + E K K L RLL Sbjct: 179 LLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P +VF T+ + AL E G AL LHGDL Q R+ TL +F G +LVATD Sbjct: 239 KPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI+ + V NF++ DP+ +VHRIGRT RAGN+G A +F P++ I Sbjct: 299 VAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQA 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 + ++ + P + E I G + + Sbjct: 359 IDHQITSKPAPGGAESTEKNIEAVIEKIRGEIEIR 393 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 154/379 (40%), Positives = 222/379 (58%), Gaps = 2/379 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L L P L L+ LGY T TP+Q+ A+ +L G DV A+TG+GKTAAF L LL Sbjct: 6 TFADLG-LAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLL 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +ID + + QALVLCPTRELA QVA + AR + N +L + GG Q +L+ Sbjct: 65 SRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQN 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P +IV TPGR++DHL++GT+ L L LV+DEAD ML MGF + ID ++ P +QT L Sbjct: 125 PQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTAL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I I+ + Q+DP+ IEI ++ L IEQ + K+ L R+L + Sbjct: 185 FSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDW 244 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++ ++F T+ +CQ + + L G +A +L G++ Q+ R+ L G +++ATDVA Sbjct: 245 NAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVA 304 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+DI+ + V+N+++ D + HRIGRT RAG SG AI FC P E + I + Sbjct: 305 ARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDIERATK 364 Query: 362 IKLNWQTPPANSSIATLEA 380 +L P+ + A Sbjct: 365 SELIDYPMPSAEKLGEHRA 383 Score = 57.6 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 40/74 (54%) Query: 384 TLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQG 443 T +D G++ + PG ++GA+ + G++G I I + V + + + ++QL+ Sbjct: 470 TYRLDVGRRDRAEPGSIVGAIANEGGIEGKFINNIDIKENFTLVDLPDGMPTEIFEQLKK 529 Query: 444 GKIKGKTCRVRLLK 457 ++KG+ +R+ K Sbjct: 530 TRVKGRPLNLRVWK 543 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 221/426 (51%), Gaps = 11/426 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L PA L + E GY T TP+QA A+PA+LAG D+ A+TG+GKTAAF L +L Sbjct: 2 TFEELK-LAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60 Query: 63 QQIDASLF--------QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q++ +AL++ PTRELA QV +R ++L + + + GG G Sbjct: 61 QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYL-DLTSMVMFGGVGMGA 119 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q D L+ I+VATPGRLLDH +GT+ L + LV+DEADRMLDMGF I V+ Sbjct: 120 QIDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALV 179 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQ 233 P +Q+LLFSAT+ + I ++ + RDPL I++ + + I Q + K LL Sbjct: 180 PKHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLT 239 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 +++ H S +VF TK V + L + G A++LHG+ Q R Q L F +G+ R Sbjct: 240 HIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIR 299 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 LVATD+AARG+DI L VVN+E+ E +VHRIGRT RAGNSG A+S +E Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFM 359 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I + + P + AE + +P Sbjct: 360 QDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARSE 419 Query: 414 DIGKIA 419 + +I Sbjct: 420 MMQRIR 425 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 552 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 150/445 (33%), Positives = 230/445 (51%), Gaps = 10/445 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F A L L + GY +P+Q AA P ++ G+D+ QA+TG+GKTAAF L L Sbjct: 71 SGFDGFG-FSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPL 129 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L+++++ Q LVL PTRELA QVA + A P+ K+L + GG F Q +L+ Sbjct: 130 LERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 189 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 ++V TPGR++DH+++GT+ L +LV+DEAD ML MGF D ++ ++ P RQ + Sbjct: 190 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 249 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I +S R DP + I + D I Q+ K+ LQR+L Sbjct: 250 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACG 309 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 ++F TK V + L G L+GD+ Q R++T+ R +GS VLVATDV Sbjct: 310 GEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDV 369 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + LV+N+++ +D E +VHRIGRT RAG +G A+ F P E + + Sbjct: 370 AARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERAT 429 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCID-------GGKKAKMRPGDVLGALTGDIGLDGA 413 + P N++I + + G + +++ + ++ L Sbjct: 430 GQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGALIQELMQRVATELQLTPE 489 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAW 438 I A++ A + + W Sbjct: 490 QIALAALNLAIGPNGLLR-KGDDDW 513 Score = 57.2 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 E +M + G + +++PG+++GA+ G+ GL G IG+I + H V + + + + Sbjct: 546 EEDMQRYRVAVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGMPEDIF 605 Query: 439 KQLQGGKIKGKTCRV 453 L+ ++ + ++ Sbjct: 606 NSLRTLRVMNRELQI 620 >UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC93_SULNB Length = 453 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 193/441 (43%), Positives = 283/441 (64%), Gaps = 4/441 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MTAF+T+ +P A L L LG+ TMT +Q ++ IL GKD+ Q+KTGSGKT AFG+ Sbjct: 1 MTAFNTIPNIPEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIP 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + D + Q +V+ PTRELA+QVA ELR++A + N KILTL GG P Q DSL Sbjct: 61 AVMGTDVKSNKPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLA 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI++ TPGR+ DHL KGT++L+++ TLV+DEADRMLDMGF + I + P +QT Sbjct: 121 KGAHILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LLFSAT+P I +++ + +DPL I++D+ I + YET K L L+ ++ Sbjct: 181 LLFSATFPPKIESLAKALLKDPLTIKVDTVQEAMKINELVYETP--DKFKTLNALIGSYK 238 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P S ++FCNTK + ++ D L + G S + +HGDL+QR+R++ ++ F+N S R++VATDV Sbjct: 239 PDSLLIFCNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDV 298 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 A+RGLDIK + LV+N++L +D EV+ HRIGRT RA +G+AIS AP ++++ + I+ Sbjct: 299 ASRGLDIKDISLVINYDLPFDKEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITSQA 358 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + + + +E T+C++GGKK K+R GD+LG +IG+D +IGKI + Sbjct: 359 KQ--ADPKDLRVDANFKMLSEFDTICLNGGKKTKLRAGDILGTFCKEIGIDNTEIGKIII 416 Query: 421 HPAHVYVAVRQAVAHKAWKQL 441 Y+A+ V K K L Sbjct: 417 TDTKAYIALHHTVVDKVLKAL 437 >UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Bacillus RepID=D2LUR2_BACS4 Length = 482 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 168/480 (35%), Positives = 246/480 (51%), Gaps = 26/480 (5%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F+ L L ++ L Y +T VQ LP L KD+ V++ TGSGKTAAF + + Sbjct: 4 TQFTELG-LSDVINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPI 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +Q+ QALVL PTRELA QV E + R L K L + G QPF Q+ L+ Sbjct: 63 CEQVTWDENSPQALVLTPTRELAAQVKEEFMNIGR-LKRIKALAIYGKQPFDRQKLELKQ 121 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA-PASRQT 180 H++V TPGRLLDHLQKGT+ ++ + LV+DEAD M + GF D +D +++ + T Sbjct: 122 KTHVVVGTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVT 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLH 239 ++SAT EA+ IS R +P+ I I+ PI Q + + K +Q + + Sbjct: 182 SIYSATISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVE 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P SC+VFC T+ + + L + S +HG L Q++R + F G R LV T+ Sbjct: 242 NPDSCIVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTN 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARG+DI+S+ LV+N+++ D EV+VHR GRT RAGN G AI+F P+E I D Sbjct: 302 LAARGIDIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPDERILFREIEDY 361 Query: 360 LQIKLNWQTPPANSSI----------------------ATLEAEMATLCIDGGKKAKMRP 397 + + P+ + + L + L +GGKK K+R Sbjct: 362 IGYAIPPMNIPSEREVERLKPAFEDKMRNRPLTKRNKASQLNTNIMQLYFNGGKKKKLRA 421 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 D +G +T + DIG I + YV + ++++ IKGKT +V K Sbjct: 422 ADFVGTITSIPTITSDDIGVITIQERETYVDILNNKGPIVLQEMKQRTIKGKTLKVHPAK 481 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 174/429 (40%), Positives = 248/429 (57%), Gaps = 9/429 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L + PA L L ELGY TP+Q A+P +L G+D+ QA TG+GKTAAF L LL Sbjct: 9 SFAALGI-APALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLL 67 Query: 63 QQID---ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 Q+++ +ALVL PTRELA QVA + R R L ++L++ GGQPFG Q +L Sbjct: 68 QRLEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRL-GVQVLSVYGGQPFGQQLRAL 126 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + H++VATPGR LDH+ +GT++LD + T+V+DEAD MLDMGF++A+++++ P +RQ Sbjct: 127 RRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQ 186 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP----PIEQQFYETSSKGKIPLLQRL 235 T+LFSAT P IAAI+GR R+P+ ++I A P + Q Y K L R+ Sbjct: 187 TVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRV 246 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L + PSS ++FC T+ + + +AL G A +LHG Q RD+ + RF G+A +L Sbjct: 247 LDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELL 306 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI+ + V+N+++ PEV+VHRIGRT RAG G AI+ P E Sbjct: 307 VATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIRN 366 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 + + ++ T P + + E+ + + D DI Sbjct: 367 VERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVEGLADEFDVMDI 426 Query: 416 GKIAVHPAH 424 AV AH Sbjct: 427 AAAAVKLAH 435 Score = 63.8 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%) Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 + + + +A L + G+ A +RP D++GA+ + L DIG I + Sbjct: 480 EAQARPRRETREARETDGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIAD 539 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 V V A + L+ ++KG+ +VR Sbjct: 540 GFSTVEVPADAADAVIEALRATRLKGRKVQVRR 572 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 149/402 (37%), Positives = 233/402 (57%), Gaps = 7/402 (1%) Query: 1 MTA--FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFG 58 M + F+ LN L + +G+ T +QA ++P I AG DV +++TG+GKT AFG Sbjct: 1 MNSIPFAQLN-LSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFG 59 Query: 59 LGLLQQIDAS--LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 + ++ ID +TQ L+LCPTRELA Q E+ ++A++ + + + GG P Q Sbjct: 60 VPAVELIDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQI 119 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ +I+V TPGR++DHL++ T+ LD L +++DEAD ML+MGF + ++ +++ P Sbjct: 120 MRLKRGANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPD 179 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRL 235 RQT+LFSAT P AI A++ + Q+DP IEI+ L IEQQFYE K+ L + Sbjct: 180 ERQTILFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGII 239 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L H P+ ++FCNTK+ V L+ G SA LHGD++Q R + + F G ++L Sbjct: 240 LQYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKIL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA-PEEAQRAN 354 VATDVAARG+D+ +++ V+N+++ + E +VHRIGRT RAG G A++ C+ + Sbjct: 300 VATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDELY 359 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR 396 I M + + ++ P+ I E ++ A Sbjct: 360 HIVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEE 401 Score = 46.8 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 + I+ G++ + P ++GA+T L G DIGKI ++ VA+ + Sbjct: 453 RGSFRKIEINIGRENHIAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIESTV 512 Query: 439 KQLQGGKIKGKT 450 K + G KI GK Sbjct: 513 KAMDGCKICGKP 524 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 153/420 (36%), Positives = 212/420 (50%), Gaps = 7/420 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F++L + P L + GY +P+Q A+PA+L GKDV A+TG+GKTA F L +L Sbjct: 2 SFTSLGLSEP-ILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 63 QQIDASLF----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + Q +ALVL PTRELA QV G + + LP + GG Q Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLP-LTSTVVFGGVKINPQMQK 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ ++VATPGRLLD + V D L LV+DEADRMLDMGF I ++ F P R Sbjct: 120 LRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKR 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 Q LLFSAT+ + I +++ + +P+ I + + P +EQ Y K K P+L +L+ Sbjct: 180 QNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIK 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK + L E ++ +HG+ Q R + L F G RVLVA Sbjct: 240 DNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARG+DI L VVNF+L E +VHRIGRT RAG G AIS +E I Sbjct: 300 TDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIE 359 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 ++Q L + + + L KK K G +G+ GK Sbjct: 360 RLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGK 419 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 155/393 (39%), Positives = 227/393 (57%), Gaps = 3/393 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 TAFS L L + + L+ELG+ TP+Q ++P +L G+D+ QA+TG+GKTAAFGL L Sbjct: 3 TAFSALG-LSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPL 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + + D + QALVL PTRELA QV + ++ ++L + GGQP Q L+ Sbjct: 62 VDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKH-SGVRVLPIYGGQPIDRQMRRLRA 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR+LD +++G++ L AL TLV+DEAD+MLDMGF + + ++ AP RQ + Sbjct: 121 GAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLV 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P +I ++ R R P+ + + + + P I Q+ Y + K + L R+L+ Sbjct: 181 FFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAED 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P+S ++F TK+ + + L + G A +LHGDL Q R+ L RF V+VATDV Sbjct: 241 PASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI L V+N+++ D E ++HRIGRT RAG +G+AISF P + R +I Sbjct: 301 AARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERAT 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 L P+ I E + +A Sbjct: 361 GSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQA 393 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 146/391 (37%), Positives = 209/391 (53%), Gaps = 11/391 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L+++ P L L E GY TP+Q A+P +L+ +D+ A+TG+GKTAAF + +LQ Sbjct: 3 FSELSLIDP-ILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQ 61 Query: 64 QIDAS-------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 + + + L+L PTRELA Q+A R L N + + GG Q Sbjct: 62 LLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHL-NIRNTVIFGGVSQHSQV 120 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 ++L+ +++ATPGRLLD + +G +SL + V+DEADRMLDMGF + VI P Sbjct: 121 NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT 180 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRL 235 RQ+L FSAT P +A ++ + +P +E+ IEQ Y + K LL + Sbjct: 181 HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHI 240 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L S +VF TK V L + G A ++HG+ Q R + L F + RVL Sbjct: 241 LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL 300 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARG+D+ L V+N+EL PE +VHRIGRT RAG+ G+A+SFC EE + Sbjct: 301 VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRD 360 Query: 356 ISDMLQIKLNWQ-TPPANSSIATLEAEMATL 385 I ++ ++ P IAT A Sbjct: 361 IHKLIGKRVPVIDNHPYVLDIATATVTPAPA 391 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 148/398 (37%), Positives = 213/398 (53%), Gaps = 17/398 (4%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L+ L L + + GY+ TP+QA +P ILAGKDV A+TG+GKTA F L LL Sbjct: 6 TFEQLD-LSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 63 QQIDAS--------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 + A +AL++ PTRELA Q+ +R+ ++L + + GG Sbjct: 65 HHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTTVVFGGVNIEP 123 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L++ I+VATPGRLLD ++ V+ LV+DEADRMLDMGF I V+ Sbjct: 124 QITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALL 183 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQ 233 P+ RQ+L+FSAT+ + I ++ + + P+ IE+ + + + I + + K LL Sbjct: 184 PSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLL 243 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L+ +VF TK + L+ AL++HGD Q+ R Q L F +G + Sbjct: 244 HLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQ 303 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATDVAARG+DI+ L VVN+EL +PE +VHRIGRT RAG+ G AIS + E + Sbjct: 304 ILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETELL 363 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGK 391 I +L KL IA +AE+ + K Sbjct: 364 TSIEKLLNTKLEI------EQIAGFDAELFVRSLPDRK 395 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 144/381 (37%), Positives = 221/381 (58%), Gaps = 3/381 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F+ N L P L + ELGY + T +Q +P IL+ +D+ A+TG+GKTAAF L Sbjct: 1 MNLFTETN-LSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ID + + Q LVLCPTREL Q++ +++ ++++ + K + GG Q SL Sbjct: 60 PILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + P IIV TPGR++D + + + A++ LV+DEAD ML MGF D ++ ++ P ++Q Sbjct: 120 KDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT + + IS P I + S + + I ++Y + K L+RL+ Sbjct: 180 TFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + Q V D L + G +A +LHGDL Q RD + +F + +LVAT Sbjct: 240 NPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ SL V++F L DPEV VHR GRT RAG G++++ PEE+++ I Sbjct: 300 DVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKS 359 Query: 359 MLQIKLNWQTPPANSSIATLE 379 +I+++ +T P I + Sbjct: 360 ATKIEIHERTIPTGDDIIKAQ 380 Score = 43.3 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 377 TLEAEMATLCIDGGKKAKMRPGDVLG----ALTGDIGLDGADIGKIAVHPAHVYVAVRQA 432 + M + GKK ++ DVL A G A+IG I + + V ++ Sbjct: 478 RRDENMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEVEKS 537 Query: 433 VAHKAWKQLQGGKIKGKTCRVRLL 456 +Q K KGK R + Sbjct: 538 FKDNVLSNIQSMKFKGKDMRAEVA 561 >UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase n=2 Tax=Bacillus pumilus RepID=A8FG79_BACP2 Length = 480 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 161/470 (34%), Positives = 240/470 (51%), Gaps = 23/470 (4%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L L L + T TPVQ L + +D+ V+++TGSGKTAA+GL + + +D + Sbjct: 11 LSDDLKQALKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICEMVDWAE 70 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 + QAL+L PTRELA QV +L L R L K + G PF Q+ L HI+ T Sbjct: 71 NKPQALILVPTRELAMQVKQDLTSLGR-LKRIKAAAIFGKAPFQAQKIELAQKNHIVCGT 129 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR+LDHL+KGT+SL+ L V+DEAD ML+MGF D + +I++ P R ++LFSAT + Sbjct: 130 PGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLFSATMSD 189 Query: 190 AIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 + +S + + P IEI + +P I ET + K LLQR + + P SC++FC Sbjct: 190 EMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCIIFC 249 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 NT+ + L+E +HG + Q DR + F NG R L+ATD+AARG+D+ Sbjct: 250 NTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVS 309 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQT 368 + V++++L ++ E ++HR GRT RAG SG I+F + + + I Q Sbjct: 310 DMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKEEAGIDFKTQP 369 Query: 369 PPANSS---------------------IATLEAEMATLCIDGGKKAKMRPGDVLGALTGD 407 P A +E ++ L +GGKK K+R D +G + Sbjct: 370 YPTKEDAEQHVERFEEKIETPIQKENKQAGVEKDIMKLYFNGGKKKKLRAVDFVGTIAKI 429 Query: 408 IGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 G+ DIG I + YV + ++ IKGK +V + Sbjct: 430 DGVAFDDIGIITIQDTKTYVDILNGKGPLVLNAMRHTTIKGKQLKVHEAR 479 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 150/386 (38%), Positives = 217/386 (56%), Gaps = 7/386 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN+ P L+ L GY TP+QA A+P L G+D+ + A+TGSGKTAAF + +L Sbjct: 45 TFTDLNIAKP-ILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVL 103 Query: 63 QQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + T+AL+L PTRELA QV +R ++ + + L GG P+ Q +L Sbjct: 104 DRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITAL 163 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +IVATPGRLLDH+ G V L +L LV+DEADRMLDMGF+D I D++R AP RQ Sbjct: 164 KKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQ 223 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSL 238 T++ SATW + I+ ++P + I A IE++ Y K LL +++ Sbjct: 224 TIMCSATWDGPVGKIAASFTKNPERVSIKVESAH--IEEKVYYCDDFDHKNRLLDKIVCH 281 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 ++F TK+ + + L E G A LHGDL Q R++ + NG ++LVAT Sbjct: 282 KDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVAT 341 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ +L V+N++L E +VHRIGR RAG +G+AIS C+ ++ + N I+ Sbjct: 342 DVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAINR 401 Query: 359 MLQIKLNWQTPPANSSIATLEAEMAT 384 L K+ T Sbjct: 402 YLDRKMEASVIEGMEPKKTYVPSENK 427 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 148/402 (36%), Positives = 224/402 (55%), Gaps = 8/402 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F +LN L PA L + E GY T TP+QA A+P ++ G D+ A+TG+GKTA F L L Sbjct: 2 SFESLN-LNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60 Query: 63 QQI----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + ++ + LVL PTRELA QV R+ +FL + +++ GG P+ +Q Sbjct: 61 NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFL-RARTVSIVGGMPYPLQNKL 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L I+VATPGRLLDH+++G + L L L++DEADRMLDMGF ++ + A R Sbjct: 120 LSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAER 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK-GKIPLLQRLL 236 QTLLFSAT IA I+ ++ ++P +++ + + IEQ+ + K LL+ LL Sbjct: 180 QTLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLL 239 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + ++F +TK+ + + L G +LHGD+ Q R++TL + +G +VLV Sbjct: 240 IAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLV 299 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARG+D+ + V+N++L E +VHRIGRT RA N+G+AISF + + I Sbjct: 300 ATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKI 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 +L ++ + + G KA R G Sbjct: 360 EQYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGG 401 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 549 bits (1415), Expect = e-155, Method: Composition-based stats. Identities = 146/433 (33%), Positives = 231/433 (53%), Gaps = 8/433 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F L L + L + +LG+ + VQ A+P +L D+ A+TG+GKTAAFG Sbjct: 1 MNKFEQLG-LNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGF 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q+IDA TQALVL PTREL Q+ EL+ +++ ++ + GG Q + Sbjct: 60 PLIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREI 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + IIVATPGR+ D + +G V++ ++ ++DEAD ML+MGF + I ++ P + Sbjct: 120 KRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT P+ +A I+ + +P+ I + + ++ + +FY +++ + L+RL Sbjct: 180 TWLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + VVFC TK+D QAV + L E G SA +LHGDL Q RD + F ++LVAT Sbjct: 240 NPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ ++ VVN++L + E + HR GRT RAG G +I E ++ + I Sbjct: 300 DVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIER 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 +++ K + P+ I E+ L + K ++ L + D+ K Sbjct: 360 IIKQKFEEKAIPSGIEIC----EIQLLHLANKIKDTEVDHEIDNYLPAINNV-LEDLSKE 414 Query: 419 AVHPAHVYVAVRQ 431 + V V + Sbjct: 415 ELIKKMVSVEFNR 427 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 147/427 (34%), Positives = 234/427 (54%), Gaps = 6/427 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T FS L + L+E+G+ T +Q A+PAI +G DV +++TG+GKT AF + Sbjct: 4 TTFSEL-EINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPA 62 Query: 62 LQQIDASLFQT--QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ID + Q L++CPTRELA Q E+++L +++P K++ + GG Q L Sbjct: 63 IEKIDIEQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKL 122 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + HI++ TPGR+ DHL++ T+ L + +V+DEAD ML MGF + ID +++ AP +RQ Sbjct: 123 KK-AHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQ 181 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT P AI I ++PL I+ID + I Q + + K +L LL Sbjct: 182 TVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHY 241 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FCNTK+ + L + G SA LHGD+ Q +R + + F N +LVAT Sbjct: 242 YGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVAT 301 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE-EAQRANIIS 357 DVAARG+D+K +E V+N+++ + E ++HRIGRTAR G +G +I+ + +I Sbjct: 302 DVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMIL 361 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 K+ P + I + ++ I K + D + + D+G I K Sbjct: 362 KETNSKIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKDLGYSENQIAK 421 Query: 418 IAVHPAH 424 A++ Sbjct: 422 AALNLYF 428 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 149/426 (34%), Positives = 216/426 (50%), Gaps = 11/426 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L PA L ++E GY T TP+QA A+PA+L G D+ A+TG+GKTAAF L +L Sbjct: 2 NFDELK-LAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60 Query: 63 QQIDASLF--------QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 ++ +ALVL PTRELA QV +R ++L + GG Sbjct: 61 HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLE-LDSTVIFGGVGMNP 119 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L+ I+VATPGRLLD Q+G + L + L++DEADRMLDMGF + ++ Sbjct: 120 QISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALV 179 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQ 233 P +Q+LLFSAT+ + I ++ + ++P +I++ + + I Q + K LL Sbjct: 180 PKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLA 239 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 +++ ++ S +VF TK +V + L + G A++LHG+ Q R Q L F +G R Sbjct: 240 HIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 LVATD+AARG+DI L VVN+E+ E +VHRIGRT RAG+SG A+SF +E Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFM 359 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I + + Q AE + RP Sbjct: 360 QEIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTE 419 Query: 414 DIGKIA 419 + +I Sbjct: 420 MLQRIR 425 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 155/379 (40%), Positives = 235/379 (62%), Gaps = 2/379 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L +L L EL ++ TP+QA +P I+ G DV QA+TG+GKT AFG+ +++ Sbjct: 5 FEQLPIL-EQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIE 63 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +ID L +TQ+L+LCPTREL QV EL++L R+ P +I + GG+ + Q +L+ P Sbjct: 64 KIDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALESKP 123 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+I+ATPGR++DH+++G + L AL L +DEAD ML MGF +A++ +++ P RQT+LF Sbjct: 124 HLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTVLF 183 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P +I I+ + Q++ +++ A+ IEQ ++ K LL RLL L + Sbjct: 184 SATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDY 243 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F NTKKD + L + G A ++HGDL+Q R + F G ++L+ATDVAA Sbjct: 244 STILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAA 303 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+DI +++VVN++L + EV+VHRIGRT RAG GLA SF +P + + + L+ Sbjct: 304 RGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKE 363 Query: 363 KLNWQTPPANSSIATLEAE 381 K+ + P+ I E Sbjct: 364 KVKFLEIPSVEEIKKQILE 382 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 141/376 (37%), Positives = 216/376 (57%), Gaps = 4/376 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L + P L + ++GY + T +QAA +PA++AG DV A+TG+GKTAAF + +L Sbjct: 14 TFADLQI-HPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML 72 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +ID + QALVL PTRELA QVA R +L +L + GG + +Q L+ Sbjct: 73 SKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRG 132 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DHL++ T+ L ++ LV+DEAD ML MGF+D ++ ++ P +Q L Sbjct: 133 AQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVAL 192 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI +S + DP + + A+ I Q + + + K+ L R+L + Sbjct: 193 FSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPF 250 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF TK+ + + + L G SA ++ GD+ Q R++T+ +G +LVATDVA Sbjct: 251 EAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVA 310 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + V+N+++ D E +VHRIGRT RAG SG A+ F +P E I + Sbjct: 311 ARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATR 370 Query: 362 IKLNWQTPPANSSIAT 377 L P + T Sbjct: 371 QTLTEAQLPTVEDVNT 386 Score = 50.7 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%) Query: 377 TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHK 436 ++ T + GK+ K+ PG ++GA+ + GL +D G+I + P V + + Sbjct: 464 KRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRA 523 Query: 437 AWKQLQGGKIKGKTCRVRLLK 457 K+L +I G +R + Sbjct: 524 TLKKLAQTRISGVLIDLRPYR 544 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 216/378 (57%), Gaps = 10/378 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F + P + L E GY+T TP+QA A+P + G+D+ A+TG+GKTAAF L Sbjct: 1 MTQFVDFGLAAP-IMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALP 59 Query: 61 LLQQID-------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFG 113 +L ++ A + LVL PTRELA Q+A R +FLP + GG G Sbjct: 60 ILHRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLP-FSTTVVFGGVTIG 118 Query: 114 MQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF 173 Q +L + ++VATPGRLLD + + ++SLD++ LV+DEAD+MLD+GF A+ ++ Sbjct: 119 RQERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTL 178 Query: 174 APASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLL 232 P +RQ+L FSAT P+ IA ++ + RDP+ + + +EQ+ S+ K LL Sbjct: 179 LPKARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALL 238 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 +L +VF TK V L +VG + ++HG+ Q R++ L F G+ Sbjct: 239 GTILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 RVLVATD+AARG+D++ + VVNF+L PE +VHRIGRTARAG GLAISFC EE Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAY 358 Query: 353 ANIISDMLQIKLNWQTPP 370 I + + K+ P Sbjct: 359 LRDIERLTRQKVPEMAIP 376 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 134/396 (33%), Positives = 206/396 (52%), Gaps = 4/396 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ N+ P L +L + Y +P+Q +P +L G D+ A+TG+GKTA F L +L Sbjct: 2 TFNEFNLRKP-LLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60 Query: 63 QQIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + +AL+L PTRELA Q+ ++ R++ + + + GG P Q +++ Sbjct: 61 NSLSKEKNHSIRALILTPTRELATQIFENIKMFGRYM-HLRACCVYGGSPAAPQLKAIRS 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I++ATPGRLLD+L G +SL + LV+DEADRMLDMGF + +++ P R T Sbjct: 120 GCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITA 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I ++ + ++P + I++ I+Q T K +L LL+ Sbjct: 180 LFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTES 239 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF TK + L E + L +HGD Q R L RF R+L+ATDV Sbjct: 240 IKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDV 299 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+DIK + V+NF+L D E +VHRIGRT RA G++IS EE I + Sbjct: 300 AARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANIESYI 359 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR 396 Q ++ + + + + +++ KK + Sbjct: 360 QFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKERFS 395 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 143/401 (35%), Positives = 215/401 (53%), Gaps = 8/401 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L + ++ +L +LG+ T +QA A+P +L+G+DV Q++TG+GKTAAF L +L Sbjct: 4 SFPELGI-SQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +++D QA+VL PTRELA QV + + + L + GGQ Q L+ Sbjct: 63 ERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFV-GNSGLRTLAIYGGQSIDRQMLQLKRG 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+V TPGR++D L++G + LD + V+DEAD ML MGF D ++ ++ AP RQT L Sbjct: 122 VHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTAL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKG-KIPLLQRLLSLHQ 240 FSAT P +I + + R P+ + ++ A P I Q Y K LQ +L + Sbjct: 182 FSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMED 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P + ++F T++ + L G S HGDL Q+ R++ L RF + R +VATD+ Sbjct: 242 PETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDI 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD+ L V+N++L E +VHRIGRT RAG G AI+ P E ++ I + Sbjct: 302 AARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHV 361 Query: 361 QIKLNWQTPPANSSIATLE----AEMATLCIDGGKKAKMRP 397 + + P + I E + G + A P Sbjct: 362 RQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLP 402 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 149/388 (38%), Positives = 211/388 (54%), Gaps = 8/388 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F ++ L A L L GY TP+Q A+P ++ GKD+ A+TG+GKTAAF L + Sbjct: 16 TTFESMG-LNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPI 74 Query: 62 LQQ-----IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L + I T+ LVL PTRELA Q+ + L ++ + GG +G Q Sbjct: 75 LHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHL-GFRVAVIFGGVKYGAQE 133 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +LQ I+VA PGRLLDH+Q+ + L + LV+DEAD+MLD+GF I ++ PA Sbjct: 134 RALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPA 193 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRL 235 RQ L FSAT P I ++G + +DP+ +++ + I Q K LL + Sbjct: 194 KRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEM 253 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 S + + C+VF TK V L G A ++HG+ Q R++TL F G RVL Sbjct: 254 FSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVL 313 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARG+D+ + VVNFEL PE +VHRIGRTARAG G AISF A +E + Sbjct: 314 VATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKD 373 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMA 383 I + + K+ + ++ L+A + Sbjct: 374 IEKVTRQKIPAIDRRNDKALGQLDATIM 401 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 149/415 (35%), Positives = 212/415 (51%), Gaps = 13/415 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F L ++ P L L+ GY TP+Q A+P +L +D+ A+TG+GKTAAF + Sbjct: 26 ILSFEQLGLIEP-LLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIP 84 Query: 61 LLQQIDASL--------FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 LLQ + +AL+L PTRELA Q+ +FL + K L + GG Sbjct: 85 LLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFL-DLKSLVIFGGVSQ 143 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q ++L+ I++ATPGRLLD + + ++L + V+DEADRMLDMGF + VI Sbjct: 144 HPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIV 203 Query: 173 FAPASRQTLLFSATWPEAIAAISGRVQRD-PLAIEIDSTD-ALPPIEQQFYETSSKGKIP 230 P RQ+L FSAT P I ++ + R+ P +E+ I Q Y + K Sbjct: 204 KLPEQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRN 263 Query: 231 LLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 LL +L + +VF TK V L++ +A ++HG+ Q R + L F + Sbjct: 264 LLLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQ 323 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 RVLVATD+AARG+DI L VVN+EL PE +VHRIGRT RAG G+AISFC PEE Sbjct: 324 QTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEK 383 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALT 405 I ++ ++ +T A A K + P D G + Sbjct: 384 AFLKDILKLISREIPVET-EHPFHNGDSMALPAPKPAPQQKPKQQHPRDKKGGFS 437 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 157/430 (36%), Positives = 252/430 (58%), Gaps = 13/430 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS ++ L+++G+ + TP+QA LP L G DV +A+TG+GKTAAF + +L+ Sbjct: 6 FSEFDISGD-INRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLE 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++A QAL++CPTREL QV+ E++R+ +++ K+L + GGQ G Q L+ Sbjct: 65 NLEAERV-PQALIICPTRELCLQVSEEIKRIGKYMK-VKVLAVYGGQSIGNQIAQLRRGV 122 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+IVATPGRL+DH+++GTV L ++T+V+DEAD ML+MGF D I+ ++ P RQT+LF Sbjct: 123 HVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLF 182 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT + I I+ + R+P + ++ + P I++ +++T + K+ LL +LS + Sbjct: 183 SATVSKPILRIARKYMRNPQVMRVEKKHS-PKIDEFYFKTREEDKVELLDWILSSNNIRM 241 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 ++FCNTK+ Q + LN +G SA +HGDL Q R++ + RF G +LVATDVAAR Sbjct: 242 GLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAAR 301 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 G+ + +E VVN++L ++ E +VHRIGRT RAG+SG + + E R I + Sbjct: 302 GIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKR 361 Query: 364 LNWQTPPANSSIAT-LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 + P+ I E ++ + + ++L +L G+ G DI Sbjct: 362 IKQSNMPSPEEIRRGYEMDLREILRRNLESKTYSDSEILESLAGE-GYSFRDI------- 413 Query: 423 AHVYVAVRQA 432 +H + V ++ Sbjct: 414 SHALLDVLES 423 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 5/382 (1%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT +F L L ++ L ELG+ T +Q A+P +L G DV Q++TG+GKTAA+ L Sbjct: 1 MTISFENLG-LSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+++D Q L+L PTRELA QVA L+ ILT+ GGQ Q SL Sbjct: 60 PILEKVDIQDPSVQVLILTPTRELAQQVAEALKDFT-VRRRLYILTVYGGQSIDRQIRSL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR++D +++ + LD+L V+DEAD ML MGF D + +++ P SR Sbjct: 119 ERGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRS 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSK-GKIPLLQRLLS 237 T FSAT P I + + + P+ I ++ T A P IEQ Y K LQ +L Sbjct: 179 TACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLE 238 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + P S ++F TK+ + L E+G HG+L Q R++ + RF +G +++VA Sbjct: 239 IEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVA 298 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLD++ L V+N++L + E ++HRIGRT RAG +G AIS + + I Sbjct: 299 TDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIE 358 Query: 358 DMLQIKLNWQTPPANSSIATLE 379 L+ K++ P S + Sbjct: 359 RKLRQKIDICKIPNRSEVEAKR 380 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 145/372 (38%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L ++ P L + GY TP+Q A+P IL G D+ A+TG+GKTAAF L +LQ Sbjct: 3 FADLKLIEP-LLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQ 61 Query: 64 QID----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + LVL PTRELA QVA + L + + GG Q ++L Sbjct: 62 RLAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNL-GLRTAVVFGGVGQRPQMEAL 120 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGRLLD +G L+TLV+DEADRMLDMGF I V+ P RQ Sbjct: 121 RRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQ 180 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P I ++ + R P+ +E+ I+Q+ K +L+ +L Sbjct: 181 TLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKD 240 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VF TK V L+ A+++HG+ Q R++ L F G+ VLVAT Sbjct: 241 PALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVAT 300 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 D+AARG+DI + V+N++L PE +VHRIGRTARAG SG+A+SFC EE I Sbjct: 301 DIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADIER 360 Query: 359 MLQIKLNWQTPP 370 ++Q +L P Sbjct: 361 LIQKRLPLLADP 372 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 143/386 (37%), Positives = 223/386 (57%), Gaps = 2/386 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L P L + GY T +P+QA A+PA+L G ++ A+TG+GKTAAF L LL Sbjct: 125 TFDDLG-LSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLL 183 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +I+ + +T LVL PTRELA QV+ +++ A + N ++ + GGQ +Q +L+ Sbjct: 184 SRINFNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRK 243 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+VATPGRL+DH+++G++SL A+ +V+DEAD MLDMGF + ++ +++ PA Q L Sbjct: 244 ASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRAL 303 Query: 183 FSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+++ I + + I T + I Q++ ++ KI L R+L + Sbjct: 304 FSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEF 363 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++F TK++ V + L G + L+GDL Q R++T+ R G ++VATDVA Sbjct: 364 DGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVA 423 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ + LVVN+++ +D E +VHRIGRT RAG SG AI F P E + I + Sbjct: 424 ARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEKATR 483 Query: 362 IKLNWQTPPANSSIATLEAEMATLCI 387 ++ P + I+ + + Sbjct: 484 QPIDVMEMPTSEQISKKRVDAFKAKV 509 Score = 56.8 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 + +E + G+ + P D++GA+ G+ ++ ++IG+I + Sbjct: 608 KRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNIGRIKLFDKF 667 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 V + + L I+G R R++ Sbjct: 668 STVELPNTLPQDVLDILSEMTIRGNDARFRVM 699 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 152/458 (33%), Positives = 241/458 (52%), Gaps = 8/458 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKD-VRVQAKTGSGKTAAFGL 59 MT F + L L+ ++ GY TP+Q +P +L+GK+ V QA+TG+GKTAAFG+ Sbjct: 1 MTKFQQMG-LSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L++++D QALVL PTRELA QV E+ L + +L + GG G Q +L Sbjct: 60 PLIERLDEKANDVQALVLTPTRELALQVCNEIDSL-KGNKRLNLLPVYGGVSIGNQIRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGR++DHL +GT+ + + LV+DEAD MLDMGF + ++ ++ +Q Sbjct: 119 KRRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQ 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD----ALPPIEQQFYETSSKGKIPLLQRL 235 L+FSAT P+ I ++ + + + + + +Q +Y S KI LL RL Sbjct: 179 ILMFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRL 238 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + + +VF TK + + + L + G A +L+GD+ Q R++ + RF + ++L Sbjct: 239 IDIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKIL 298 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 ++TDVAARG+DI +L+ V+N+ L +PE ++HRIGRTARAGN G AI+F P E +R Sbjct: 299 ISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMF 358 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 I + + P I + E I + P + A T D Sbjct: 359 IKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIYEILAETILEETDQEPS 418 Query: 416 GKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 IA + Y + + + K+++ K K R+ Sbjct: 419 QIIASILKYFYGGILKEENYNKIKEVKNSS-KSKDQRL 455 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 145/371 (39%), Positives = 210/371 (56%), Gaps = 8/371 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + L+ L + GY T TP+QA A+P +L D+ A+TG+GKTAAF L Sbjct: 1 MTTFKDLG-LSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALP 59 Query: 61 LLQQIDAS-----LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L I ++ + LVL PTRELA Q+A + ++ L +I T+ GG +G Q Sbjct: 60 ILHHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGL-GLQIATIFGGVKYGPQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +LQ I+VATPGRL+DH+++ T+ L A+ LV+DEAD+MLDMGF I V P Sbjct: 119 YKALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQR 234 A RQ L FSAT P+ IA ++ + +P +EI + QQ + K LL Sbjct: 179 AQRQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSE 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L + + + ++F TK+ V L G A ++HGD Q R++ L F G R Sbjct: 239 LYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRA 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ ++ V+N+EL + E +VHRIGRTARAG G +I+ A +E + Sbjct: 299 LVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLK 358 Query: 355 IISDMLQIKLN 365 I + + ++ Sbjct: 359 DIERITRQRIP 369 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 152/424 (35%), Positives = 240/424 (56%), Gaps = 6/424 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F + L P + ++++ Y T +QA A+P ++ G DV ++ TG+GKTAAFG+ Sbjct: 4 TKFEDIG-LSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPA 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++I++ L Q LVL PTRELA Q+A E+R+ A++ P + + GG P Q +L+ Sbjct: 63 VERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALRA 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 +I++ TPGR++DH+++ T+ LD L T+V+DEAD ML+MGF D I ++ P +RQT+ Sbjct: 123 -ANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P AI I+ + DP ++I + + +EQ FY K+ L LL H Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLLQYHD 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P VVFCNTK ++ + L++ G AL +HGD++Q R Q + F +G R+LVATDV Sbjct: 242 PKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDV 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP-EEAQRANIISDM 359 AARG+D++++E V NF++ + E ++HRIGRT RAG +G++ + + + Sbjct: 302 AARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQLRRF 361 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGK 417 + + P I + E + +A + G+ L A+ + G D DI Sbjct: 362 INADIREAPLPIGDEIVRKKREKFAARVARTLEADEYGKWGEQLDAIAAERGCDMRDIAC 421 Query: 418 IAVH 421 Sbjct: 422 ALAQ 425 Score = 47.2 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%) Query: 352 RANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 A +I+ + + PA L D G+ + P + + A+ GL Sbjct: 423 LAQMIAARDKKLIPVLKIPAPGERPVRGGRRVVLRADAGRAQNVTPANFVAAIADASGLP 482 Query: 412 GADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 IGKI + + + + A + ++ +I+G Sbjct: 483 ARAIGKIDIFEDSSLIELYENDALTVLEAMRSTRIRG 519 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 158/393 (40%), Positives = 227/393 (57%), Gaps = 2/393 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +FS L L P + + ++GY TP+Q +P ILAG DV QA TG+GKTAAFG+ Sbjct: 3 IPSFSDLQ-LSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIP 61 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ + Q +VLCP+RELA QV EL +LA IL + GGQP Q +L Sbjct: 62 AIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALS 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 II+ TPGR++DH+++ T+ LDA++ +V+DEAD+MLDMGF + I++++ P RQT Sbjct: 122 RGVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQT 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 ++ SAT+P I IS R Q++P+ ++ + +P IEQ + E K L R+L + Sbjct: 182 VILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFY 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 QP ++FCNT+ AV AL G A LHG + Q RD+ + F G +L+ATD Sbjct: 242 QPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATD 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+D++ ++LV NF+ D E +VHRIGRTARAG +G AISF +P E R + Sbjct: 302 VAARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRDVRRS 361 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 + + P I +A D K Sbjct: 362 TRAEPEPLPIPTLREIGGKKATTTLADADALMK 394 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 147/383 (38%), Positives = 230/383 (60%), Gaps = 9/383 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F +L V P + L +LG T TP+Q ++P +L G+D+ A+TG+GKTAAFGL Sbjct: 22 LTNFESLGVSKP-IIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLP 80 Query: 61 LLQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 L++++ A + + L+L PTREL +Q+A L++ R + +I + GG Q Sbjct: 81 LIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIR-KSSLRINVVVGGVSINKQ 139 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 + L+ I+VATPGRLLD + + ++L A+ LV+DEAD+MLD+GF + + + P Sbjct: 140 QLQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVP 199 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETS-SKGKIPLLQ 233 RQT+LFSAT P+AIA ++G DP+ +E+ A +EQ + + K LL+ Sbjct: 200 KKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 259 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 + L+ + +VF TK + + L +G S S+HG+ Q R++ L F +GS + Sbjct: 260 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 L+ATDVAARG+DI ++ V N++L P+ +VHRIGRTARAG G+AI+FCAP+EA+ Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 379 Query: 354 NIISDMLQIKLNWQTPPANSSIA 376 I ++ I + + A ++I+ Sbjct: 380 RDIERLMGIDITVASGEAPANIS 402 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 147/416 (35%), Positives = 226/416 (54%), Gaps = 9/416 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILA-GKDVRVQAKTGSGKTAAFGL 59 M F+ L L P L G+ +P+Q A+P +L+ D+ QA+TG+GKTAAFGL Sbjct: 1 MDKFTALG-LEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++Q+I+ L + QAL+LCPTRELA QV E++ + +TL GG P Q+ +L Sbjct: 60 PIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKG-RGITTVTLYGGAPIMDQKRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGR + ++ G + LD+L LV+DEAD ML+MGF + ++ V++ +P R Sbjct: 119 KKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRT 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 L+FSAT P + I+ + + I+ S + I+Q YE + K L R++ L Sbjct: 179 VLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDL 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC TK + + V L G +A +HGD+ Q R++ L RF N + +L+AT Sbjct: 239 EKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L +VNF L E +VHRIGRT RAG +G AI+ P+E + + I Sbjct: 299 DVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIEK 358 Query: 359 MLQIKLNWQTPPANSS-----IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 K + P I L E+A + + ++ P + A + Sbjct: 359 KTGAKTERRKLPFGEEMIKLRIQKLSKELAHFQENNAELEELAPIKEVAAQLLEDN 414 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 152/424 (35%), Positives = 233/424 (54%), Gaps = 4/424 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F LN+L P L +NE+GY+T TP+Q+ A+P++LAGKDV +A+TG+GKTAAFGL LL Sbjct: 9 FDQLNLLAP-VLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLS 67 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++DA L Q Q LV+CPTRELA QVA L A+ + + T+ GGQ + Q L P Sbjct: 68 RLDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARGP 127 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 I+V TPGR++DH++KG + LD L V+DEAD ML+MGF + I+ ++ P Q F Sbjct: 128 QIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAFF 187 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I I+ + DP+ ++I + P I Q+ + GK L+R+ + Sbjct: 188 SATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDYD 247 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF T+ D + + L G A +L+GD++Q+DR++ + + NG +L+ATDV A Sbjct: 248 AMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVVA 307 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + V+N++L D E +VHRIGRT RAG G AI F + E + + + + + Sbjct: 308 RGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERITEG 367 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIAV 420 K+ P + E + + ++ + ++ + Sbjct: 368 KIEVFDMPTAEQLGQARIERTQAALVKAMEVNDLANFQAIVSQMAEQSNTTPLELAAALL 427 Query: 421 HPAH 424 Sbjct: 428 FDRQ 431 Score = 54.1 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 E T + G+ +RPGD++GA+ +I +D DIG+I + +V + + + A+ Sbjct: 483 NGEFDTYRFNVGRTHGVRPGDIVGAVANEIKIDSNDIGQIRLFDGFTHVDLPKNMPKPAF 542 Query: 439 KQLQGGKIKGKTC 451 ++LQ I+ Sbjct: 543 EKLQQVLIRKHKI 555 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 141/399 (35%), Positives = 215/399 (53%), Gaps = 5/399 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L + + L +G+ TP+Q ++P L G D+ QA+TG+GKT AFG+ Sbjct: 1 MQNFKELGI-SDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ Q+L+L PTRELA QVA +LR ++ +++T+ GG P Q +L+ Sbjct: 60 LIEKV-VGQQGVQSLILAPTRELAMQVAEQLREFSKGQK-VQVVTVFGGMPIERQIKALK 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS-RQ 179 P I+V TPGR++DHL + T+ ++TL++DEAD M++MGF D + ++ PA RQ Sbjct: 118 RGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQ 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT P+AI + + + P I +++ + P I++ + K L + Sbjct: 178 TMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 HQP +VF TK+ + AL G A LHGD+ Q R + L +F N +LVAT Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V NF++ D E + HRIGRT RAG G+A++F P E I D Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 357 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + ++ PP + + + + P Sbjct: 358 VNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEP 396 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 143/418 (34%), Positives = 232/418 (55%), Gaps = 4/418 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M+ F L + P L +LGY T +Q A+P I++ + D++ A+TG+GKTAAF L Sbjct: 1 MSTFLELGLKEP-INKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ +D++ QA++L PTRELA Q+ ++ ++LP+ K+ T+ GG Q SL Sbjct: 60 PILELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR +D +++ + L + LV+DEAD ML+MGF D +D V+ P ++Q Sbjct: 120 KRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT+P+ + +I+ P+ I + + ++Y + + + P L+R+ L Sbjct: 180 TLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADL 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+++ Q V D L + G SA +LHGDL Q RD + +F + ++LVAT Sbjct: 240 NPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N +L E + HR GRT RAGN+G++I +E + I Sbjct: 300 DVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEK 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGAL-TGDIGLDGADI 415 ++Q K P+ I + + + + + D L ++ GLD + Sbjct: 360 IIQKKFTEAKVPSGKDICQNQLMSLIDKVVNIEVNETQINDFLPSIYEKLEGLDREQL 417 Score = 41.8 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 2/88 (2%) Query: 372 NSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQ 431 NS T M I+ G+K + PG ++G + D +IG I + + + + Sbjct: 447 NSRARTENENMTRFFINIGRKDNLNPGKLIGLINEQNIGDKVEIGSIDILDTFSFFEIDK 506 Query: 432 AVAHKAWKQLQGG--KIKGKTCRVRLLK 457 K + G++ + + K Sbjct: 507 NFEDKTLEAFSSNQPDFDGRSVNIEITK 534 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 162/453 (35%), Positives = 240/453 (52%), Gaps = 36/453 (7%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L L P L L E+GY PVQAA ++ G+DV VQ++TGSGKTA FG+ ++ Sbjct: 63 SFAELG-LQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVV 121 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q IDA+ QAL+L PTRELA QV+ E+ +LA+ I + GG P Q D+L Sbjct: 122 QHIDAASKGAQALILAPTRELALQVSREIAQLAKP-KGLHIEPIYGGAPIKPQMDALAAG 180 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS--RQT 180 ++ TPGR+LDHL++ T+ + L++DE D ML MGF + I+ +I PA RQT Sbjct: 181 AQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQT 240 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P+ I I+ R DP I + + + ++ I+ +Y S + L ++L Sbjct: 241 VLFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAE 300 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P S ++FCNT++D V L G A ++ DL QRDR++ + R + + LVATD Sbjct: 301 SPDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATD 360 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+DI L V+N+ PEV+VHR GRT RAG SG+AIS P E + + Sbjct: 361 VAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSFYYLKLI 420 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 +I+ + P N + L+ +GA ++A Sbjct: 421 YKIRPEERDLPTNEEMGILD-------------------------------EGARFERVA 449 Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCR 452 + A +A+A + W+ +G +I G + Sbjct: 450 ALVSEEPGADSRALARRIWQSDEGERIFGALVQ 482 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 148/411 (36%), Positives = 225/411 (54%), Gaps = 7/411 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F L + + +L +G+ TP+Q ++P L G D+ QA+TG+GKT AFG+ Sbjct: 12 LQNFKELGI-SDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIP 70 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ Q+L+L PTRELA QVA +LR +R +++T+ GG P Q +L+ Sbjct: 71 LIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRG-QGVQVVTVFGGMPIERQIKALK 128 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA-SRQ 179 P I+V TPGR++DHL + T+ D ++TL++DEAD M++MGF D + ++ PA RQ Sbjct: 129 KGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQ 188 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT P+AI A+ + + P I +++ + P IE+ + K L + Sbjct: 189 TMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 248 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 HQP +VF TK+ + AL G A LHGD+ Q R + L +F N +LVAT Sbjct: 249 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 308 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V NF++ D E + HRIGRT RAG G+A++F P E I D Sbjct: 309 DVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 368 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDG--GKKAKMRPGDVLGALTGD 407 K++ PP + + ++ KK++ R + L + Sbjct: 369 ANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKKSESRLKRISTELLNE 419 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 150/370 (40%), Positives = 215/370 (58%), Gaps = 8/370 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F+TL + P L ++E Y T TP+QA ++P +L G D+ A+TG+GKTAAF L Sbjct: 56 LTDFTTLGLAEP-LLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLP 114 Query: 61 LLQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L +I A+ + +ALVL PTRELA Q+A R +F + + GG G Q Sbjct: 115 ILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRP-SVAVVIGGAKPGPQ 173 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 ++ ++VATPGRLLDH+ G + LDA+ T+V+DEAD+MLD+GF AI ++ P Sbjct: 174 ARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLP 233 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQR 234 RQ ++FSAT P+ I A++G RDP + + + + I+QQ + + K L Sbjct: 234 RQRQAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAW 293 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 LL+ +VF TK V L + G A ++HG+ Q R++ L +F +G RV Sbjct: 294 LLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRV 353 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ ++ VVNFEL PE +VHRIGRTARAG G+AIS P E Sbjct: 354 LVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLR 413 Query: 355 IISDMLQIKL 364 I ++ L Sbjct: 414 DIETLIGRHL 423 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 148/402 (36%), Positives = 214/402 (53%), Gaps = 10/402 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L + P Q + +GY T TP+Q ++P++L GKD+ A+TG+GKTAAF L +L Sbjct: 2 KFEELPLANPLQ-RAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60 Query: 63 QQID-----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q++ S +AL+L PTRELA QV R A+F + GG Q+ Sbjct: 61 QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTA-ISTACIFGGVNDNPQKQ 119 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L ++VATPGRLLD + + +SL L V+DEADRMLDMGF I V+ P Sbjct: 120 KLIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQD 179 Query: 178 RQTLLFSATWPEAIAAISGRVQR-DPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRL 235 RQ L FSAT PE I+ ++ + R +P+ +E+ + I Q+ Y + K LL+ L Sbjct: 180 RQNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKEL 239 Query: 236 LSLH-QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L+ H + +VFC TK + L + G ++HG+ Q R + L F RV Sbjct: 240 LAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRV 299 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ + V N++L + E VHRIGRTARAG G+AISFC+P+E Sbjct: 300 LVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLR 359 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR 396 I + ++K+ ++ + E A + + R Sbjct: 360 GIEKLTRVKIPEGDQSIYENLPPPQKETAESMMRNSRGRMSR 401 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 145/398 (36%), Positives = 222/398 (55%), Gaps = 11/398 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGL 61 +F L L A L + G+ T +Q +P +L+G D+ Q++TG+GKTAAF L + Sbjct: 2 SFENLG-LSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ ID QA++L PTRELA QVA E++ L R + + GGQP G Q +L+ Sbjct: 61 IEAIDEKEKSVQAIILAPTRELALQVADEIKSL-RGRKRVYVYAVYGGQPIGPQIRALER 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H++V TPGR+LDH+++GT+ L + ++DEADRMLDMGF D I+ + R P ++ L Sbjct: 120 GTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVL 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQ 240 +FSAT P I ++ R D I++ S + +P +EQ++ E K L+++LS Sbjct: 180 MFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILS--D 237 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VFC TK++ + + + L + G SA +L+GD+ Q R++T RF R+LVATDV Sbjct: 238 DFYGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDV 297 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + +VN+ L E +VHRIGRT R G G A++F P E +R I+ + Sbjct: 298 AARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIASVA 357 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 + + L E + + R Sbjct: 358 GVDIQKSEL-----SEELPREYHERYKREERPQRYRKN 390 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 147/431 (34%), Positives = 229/431 (53%), Gaps = 6/431 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L LP L+ + ELG+ T +QAAA+P +L G+DV A+TG+GKTAAF L LL Sbjct: 129 FDDLG-LPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLA 187 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID + QALVL PTRELA Q A + A + + GG + Q +L+ Sbjct: 188 HIDPEKREVQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEGGA 247 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGR++D + +G + LDA+ V+DEAD ML MGF++ ++ + P R + LF Sbjct: 248 QVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISALF 307 Query: 184 SATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I ++ R D + I + ++Q + + KI L R+L++ + Sbjct: 308 SATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEAQ 367 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF T+ + + L G + +L GD+ Q++R++ + R +G+ VLVATDVAA Sbjct: 368 AALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVAA 427 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + LVVNF++ + + +VHRIGRT RAG +G +I+F P+E R I Sbjct: 428 RGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIEKQTGS 487 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP---GDVLGALTGDIGLDGADIGKIA 419 ++ P + ++ L A T+ + AK R ++L + A G A Sbjct: 488 RMEQIELPTPAEVSKLRA-RRTVEQAMARVAKGRLWVYEEILEDFVAEQAKAAAQSGSGA 546 Query: 420 VHPAHVYVAVR 430 +H + + Sbjct: 547 HLDSHEHGSDS 557 Score = 54.9 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 365 NWQTPPANSSIATLEAEMATLC-IDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 + P + + + ++ G K +++PG ++GALT + GL G+D+G I + P Sbjct: 617 EREGRPRKERQPRRQMKNSVRYRVEVGHKDRVKPGAIVGALTHEGGLSGSDLGHIDIFPT 676 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 V + ++ +A K++ ++ G+ ++ Sbjct: 677 FSLVEIGVPLSPEARKRISQARVSGRALKI 706 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 141/401 (35%), Positives = 213/401 (53%), Gaps = 8/401 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS LN++ L GY T +Q A+P +L+G+D+ A+TG+GKTAAF + +L Sbjct: 2 KFSELNII-ERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60 Query: 63 QQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q+I + + QAL+L PTRELA Q+ ++ A++L T+ GG Q + Sbjct: 61 QKIYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIIST-TIYGGVSQKRQEE 119 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 +L+ +++ATPGRLLD + + +SL + LV+DEAD+MLDMGF + ++ P Sbjct: 120 ALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKK 179 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLL 236 RQT+LFSAT P+ I +S ++ +P I + T L I Q Y + K LL L+ Sbjct: 180 RQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLI 239 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 S +VF TK + L +G + +HG Q R++ L F G ++LV Sbjct: 240 YTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILV 299 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATD+AARG+DI++L+ V+NFEL PE ++HRIGRT RAG SG+A+S P E + + Sbjct: 300 ATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQV 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + K+ + E+ T + K Sbjct: 360 EKHINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEK 400 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 156/397 (39%), Positives = 229/397 (57%), Gaps = 3/397 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L L + L +LG+ T TPVQAA +PA+LAG DV +A+TG+GKT AFGL L+ Sbjct: 6 SFAELG-LSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLI 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID + + QAL+L PTRELA QVA L A + +IL + GGQP G+Q +L+ Sbjct: 65 DSIDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDG 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DH+++GT++LDAL +V+DEAD ML MGF + I+ ++ PA RQT L Sbjct: 125 AQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I I+ R R+P I I + +A I+Q + + K L R++ + Sbjct: 185 FSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAG 244 Query: 242 -SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK + +ALN G + L+GD+EQ +R++ + +G V+VATDV Sbjct: 245 LDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ + V N++ D EV+VHRIGRT RAG G AI F P + + I + Sbjct: 305 AARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERLT 364 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + Q P +++ E + + P Sbjct: 365 GKPVREQKVPDRAAVIARREERLAERLQAELAGEASP 401 Score = 54.1 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 + P+ EA+M + G+ + PG ++GAL + GL+G DIG+I + H Sbjct: 464 DRAPRPSRGKDRGPEADMVRYYMPVGRNHGIAPGAIVGALANEGGLNGRDIGRIGLQDDH 523 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTC 451 +V + A+ A ++L + + Sbjct: 524 SHVDLPAALDEAAVRRLGNIHVANRRL 550 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 133/396 (33%), Positives = 208/396 (52%), Gaps = 3/396 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F N L P + +GY+T TP+Q A+P++++G+DV A+TG+GKTAAFGL +L Sbjct: 3 FKQFN-LHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLH 61 Query: 64 QI-DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++ + LVL PTRELA+Q+ L + + + +T+ GG Q L+ Sbjct: 62 RLVQEERGHVRGLVLAPTRELAEQINDALNGMGK-QTRLRSVTVYGGVNINTQIKKLKEG 120 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+VA PGRLLDH+ +GT+ L + LV+DEAD+M DMGF + ++R P RQ L+ Sbjct: 121 AEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM 180 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 FSAT P+ I ++ + R+P+ +++ T + Y K PLL +L Sbjct: 181 FSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F TK + V + L + G A SL G+L Q R L F +G+ +++VATD+AA Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ + V+N+++ PE + HRIGRT RA +G A + E+ I +L Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGT 360 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 K+ + + + + R G Sbjct: 361 KIERRRIEGFDYAVPAPQKDTEFARPPREPQRRRDG 396 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 156/443 (35%), Positives = 229/443 (51%), Gaps = 6/443 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 MT F L L L L G+ TP+Q +P +L G D+ QA+TG+GKTAAFGL Sbjct: 1 MTDFKELG-LSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ + + QALVL PTRELA QVA E+ L + ++L + GGQ MQ +L Sbjct: 60 PIIETAVENAKRVQALVLTPTRELAIQVADEINSL-KGKKRIRVLPVYGGQAIHMQLKAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGR++DHL++GT+ LD L+ V+DEAD M +MGF D + ++++ A R+ Sbjct: 119 KSGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P + I+ D I + + +P +Q F+E + + L R++ Sbjct: 179 TLLFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDA 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VF T+ D V L E G A +HGDL Q R++ L RF +LVAT Sbjct: 239 EPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L VVNF L DP+ VHR GRT RAG G+AIS AP E +R I+ Sbjct: 299 DVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 I + P + + +DG + + + A G + D+ + Sbjct: 359 SSGIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLLEGREPEDV--V 416 Query: 419 AVHPAHVYVAVRQAVAHKAWKQL 441 A H + +++ + Sbjct: 417 AALLKHAFGDELVESSYREINTV 439 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 162/416 (38%), Positives = 240/416 (57%), Gaps = 4/416 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L LP A L + LG+ T TP+Q AA+PA+L+G+D+ A+TG+GKTAAFGL LL Sbjct: 21 SFDDLG-LPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLL 79 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +D L QALVL PTRELA QV+ + K+L + GG F Q L+ Sbjct: 80 AAVDPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLERG 139 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++D L++G++ LDAL LV+DEAD ML MGF++ +D ++ PA++Q L Sbjct: 140 AQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVAL 199 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I ++ R+P I + + + Q + + K L R+L+ Sbjct: 200 FSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSDA 259 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF T++ + V AL G +A S+ GD+ QR+R++ + R +G+ VLVATDVA Sbjct: 260 DAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVA 319 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + LVVNF++ + E +VHRIGRT RAG +G A++F P+E R I + Sbjct: 320 ARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIERVTG 379 Query: 362 IKLNWQTPPANSSIA--TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 +L T P N+ +A A +AT G + L A ++G+D D+ Sbjct: 380 SRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHRERLVAHVAELGVDPLDV 435 Score = 62.6 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%) Query: 384 TLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQG 443 I G + + P ++GA+TG+ GL GADIGKI + P+ V + V+ +++ Sbjct: 487 KYRIAVGHRDGVSPQAIVGAITGEGGLRGADIGKIDIFPSFSLVEIPGGVSPDVARRIGA 546 Query: 444 GKIKGKTCRVRL 455 K+ G+ R+RL Sbjct: 547 AKVAGRPLRIRL 558 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 149/371 (40%), Positives = 211/371 (56%), Gaps = 8/371 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+FS L + P + L E ++T TP+QA A+P ILAG+D+ A+TG+GKTAAF L Sbjct: 36 LTSFSNLGLAEP-IVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALP 94 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L ++ +ALVL PTREL+ Q+ + R N + GG P G Q Sbjct: 95 ILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRH-ANISVSLAIGGVPMGRQ 153 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +L ++VATPGRL+D ++ V LD + LV+DEAD+MLDMGF AI ++R P Sbjct: 154 IRALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLP 213 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQR 234 R +L FSAT P AIA ++G + RDP+ + + +EQ+ K LL Sbjct: 214 HKRHSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAE 273 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +LS +VF TK V L + G +A ++HG+ Q RD+ L F G R Sbjct: 274 VLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRT 333 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 L+ATD+AARG+D+ + V+NF+L PE +VHRIGRTARAG G+AISFC EE Sbjct: 334 LIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLR 393 Query: 355 IISDMLQIKLN 365 I +++++L Sbjct: 394 SIEKLIKMQLP 404 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 3/368 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L + LN+ TPVQ A+P +LA +DV QA+TG+GKT AF L + Sbjct: 3 NKFAKLGI-SEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L++++ QAL++ PTRELA Q+ E ++LA + IL GGQ Q L+ Sbjct: 62 LERVNVEKPTIQALIITPTRELAIQITAETKKLAE-VKGINILAAYGGQDVEQQLRKLKG 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 + HII+ TPGRLLDHL++ T++L L+ LV+DEAD+ML MGF ++D++ P RQ + Sbjct: 121 SIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNM 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P + ++ + +DP+ I++ S L I Q ET+ +GK LL +L + Sbjct: 181 FFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEYN 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P ++FC TK+ A+ +AL +G ++ LHGDL Q R++ + F + LVATDV Sbjct: 241 PFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI+ + + N+++ D E ++HRIGRT RAG +G+AI+F + II ++ Sbjct: 301 AARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKVI 360 Query: 361 QIKLNWQT 368 ++ L+ Q Sbjct: 361 KMDLDVQK 368 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 141/368 (38%), Positives = 211/368 (57%), Gaps = 6/368 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L L L + ELGY TPVQAAA+P++L +D+ A+TG+GKTA+F L ++ Sbjct: 16 SFADLG-LSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 63 QQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + + ++L+L PTRELA QVA + ++ + L GG P Q+ +L Sbjct: 75 DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHK-LSMSLLIGGVPMAEQQAAL 133 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ATPGRLLD ++G + L + LV+DEADRMLDMGF I+ + P SRQ Sbjct: 134 EKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQ 193 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P AI ++ R +P IEI I+Q+ E S + K L +L Sbjct: 194 TLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRA 253 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + + ++FCN K + + L + G S +HGD+ Q +R L RF NG VLVA+ Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 D+AARGLD+K + V NF++ P+ ++HRIGRT R G SG A++F P + + I Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEK 373 Query: 359 MLQIKLNW 366 ++ +++ Sbjct: 374 LMGVEIPR 381 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 126/390 (32%), Positives = 195/390 (50%), Gaps = 13/390 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F P L + +LG+ TP+Q A P ++G+D+ + TGSGKT ++ L Sbjct: 121 VTTFEEAG-FPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLP 179 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A LVL PTRELA Q+ E + + + + GG P G Q Sbjct: 180 AIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGGVPRGPQ 238 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L I +ATPGRLLD L +L + LV+DEADRMLDMGF I ++ Sbjct: 239 IRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP--PIEQQFYETSSKGKIPLLQ 233 RQT++FSATWP+ + ++ D + + + S D I+Q + K L Sbjct: 299 PDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLG 358 Query: 234 RLLSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 + + + + ++F TK+ + L + G AL++HGD Q +RD L F G Sbjct: 359 KDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTG 418 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + ++VATDVA+RG+D+K + V N++ + E +VHRIGRT RAG G A ++ + A Sbjct: 419 KSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNA 478 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATLEA 380 ++A + +L + P +A + Sbjct: 479 KQARELVSIL-SEAKQDIDPKLEEMARYSS 507 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 168/396 (42%), Positives = 220/396 (55%), Gaps = 24/396 (6%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F+TL L A L L+EL Y T TPVQA A+PA LAG+D+ V ++TGSGKTAAF L Sbjct: 58 SGFATLG-LDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPA 116 Query: 62 LQQIDASLFQTQA---------------------LVLCPTRELADQVAGELRRLARFLPN 100 +Q+I +A LVL PTRELA QV + R L Sbjct: 117 IQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRR 176 Query: 101 TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD 160 ++ GG P+ Q +L P I+VATPGRLLDH+ G + L AL LV DEADRMLD Sbjct: 177 IVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLD 236 Query: 161 MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQ 219 MGF+D ID ++ PA+RQTL+FSAT IA ++ R RDP IEI + A IEQ+ Sbjct: 237 MGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQR 296 Query: 220 FYETSSK-GKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR 278 + T K LL LL +VF TK+D ++ + L++ G SA +LHGD+ Q Sbjct: 297 LHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQG 356 Query: 279 DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNS 338 R++TL G+ RVLVATDVAARG+D+ + VVNF+L E +VHRIGRT RAG S Sbjct: 357 ARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRS 416 Query: 339 GLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSS 374 G AI+ + + I +++ Sbjct: 417 GTAINLVNHNDMFQWKRIERFTNQRIDASVIEGLEP 452 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 206/368 (55%), Gaps = 4/368 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ +N++ P L + E G++ +P+Q +P +L G+D+ A+TG+GKTAAF L +L Sbjct: 2 NFNEMNLIKP-LLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60 Query: 63 QQIDASLF-QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 Q + +AL++ PTRELA Q+ ++ K + GG +Q +SL+ Sbjct: 61 QSLSKGEGSGVRALIITPTRELAIQIYESFECFGKYTS-LKQSVIYGGVGQSLQVNSLKA 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I++ATPGRL D + +G ++LDA+ V+DEAD+MLDMGF + I VI+ P +RQTL Sbjct: 120 GIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTL 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I +++ + +P I+I T + IEQ Y KI LL L+ H+ Sbjct: 180 LFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHK 239 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VF TK V D LN+ ++HG Q R L F G +VLVATD+ Sbjct: 240 MSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDI 299 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+DI L VVN+++ E+++HRIGRT RAG G AI+ C ++ I + Sbjct: 300 AARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHI 359 Query: 361 QIKLNWQT 368 + + Sbjct: 360 GMVIPEVP 367 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 148/380 (38%), Positives = 212/380 (55%), Gaps = 4/380 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L ++ P L +N+LG+ TP+Q A+P IL G ++ QA TG+GKTAA+ L Sbjct: 1 MEEFKKLGLITP-LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ+I + Q L++ PTRELA QVA E+ +L ++L + L + GGQ Q L+ Sbjct: 60 VLQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLR 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IV TPGR+LDH+ + T + +++DEAD MLDMGF D I+ ++ +QT Sbjct: 118 QGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQT 177 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P I I + ++ + +P I Q +YE KI L +L+ Sbjct: 178 LLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSE 237 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VFC TKK V + LN G +A LHGD+ QR+R QT+ F G +LVATD Sbjct: 238 LPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATD 297 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V+NF++ +PE ++HRIGRT RAG G AI+ E + I + Sbjct: 298 VAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEA 357 Query: 360 LQIKLNWQTPPANSSIATLE 379 + +L + P + Sbjct: 358 INKRLKREILPEPVDLEEAR 377 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 152/411 (36%), Positives = 228/411 (55%), Gaps = 3/411 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ L L P + + GY + +Q ++P ILAG D+ QA+TG+GKTAAF L Sbjct: 16 IGGFAAL-ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALP 74 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L +ID S + QAL+L PTRELA QVA A+ +P ++ + GG P G Q +++ Sbjct: 75 ILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 134 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 + I+VATPGRL DHL++ L +N LV+DEAD ML +GF D ++ + + P +RQT Sbjct: 135 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQT 194 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P++I AI+ R RDP ++I T + IEQ + K + LL + Sbjct: 195 VLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVE 254 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + ++F TK+ + AL G A +L+GD+ Q R++ + +G ++VATD Sbjct: 255 DFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATD 314 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V N ++ +DPE +VHRIGRT RAG G A+ P E + +I + Sbjct: 315 VAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERV 374 Query: 360 LQIKLNWQTPPANSSI-ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 K+ P ++ ++ A+ GD+L LT DIG Sbjct: 375 TGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG 425 Score = 50.7 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIAVHP 422 + P A + A+ + ++LGA+ + GL IG+I V Sbjct: 474 DRGDRPERERRAPVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRD 533 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + V + + + +L+ ++ GK ++R + Sbjct: 534 SFSLVELPEDGLERLLTKLKDTRVAGKQLKLRRYR 568 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 153/421 (36%), Positives = 217/421 (51%), Gaps = 10/421 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F + L P L + E G+ + +P+Q A+P +L GKD+ QA+TG+GKTAA+GL Sbjct: 15 NDFQSFG-LRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPC 73 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +I Q LVL PTRELA QV+ EL +L + L K T+ GG + Q + Sbjct: 74 LNRIKVEDGM-QVLVLTPTRELALQVSDELFKLGKHL-GIKTTTIYGGSSYSKQITQVAK 131 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 + VATPGRLLD L+ + + +++DEAD MLDMGF D I+ + P RQTL Sbjct: 132 GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTL 191 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT PE I ++ + Q P ++I +T+ + IEQ +Y + + R+L Sbjct: 192 LFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYEN 251 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P ++F TKK+ + L+ G +LHGDL Q+ R+Q L +G ++LVATDV Sbjct: 252 PFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDV 311 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD+K L LV+N+ L +D E + HRIGRT RAG SG A++ E++ + Sbjct: 312 AARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGTS 371 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 L P + E D KK + L D IA+ Sbjct: 372 GTNLTIAALPTKKEVHLSREE------DFLKKVVDTEIHADAEAVLEKLLKLEDKRSIAL 425 Query: 421 H 421 Sbjct: 426 K 426 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 140/393 (35%), Positives = 221/393 (56%), Gaps = 2/393 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L L+ L+ +G+++ TP+QAAA+P +L G+D +A+TG+GKTAAF L LL Sbjct: 36 FNEL-ALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 94 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +I+ + + QA+++ PTRELA QVA E++ L R + K+L + GG Q +L Sbjct: 95 KINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGA 154 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+V TPGR+ D L + + LD +T V+DEAD ML MGF D + ++ AP S Q +LF Sbjct: 155 HIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLF 214 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P + I R R+P +++ T+ + + Q ++ K + RLL + Sbjct: 215 SATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETD 274 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF T++D + + D L+ G A +LHGD+ Q R++T+ G +LVATDV A Sbjct: 275 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 334 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + V N+++ +D E ++HRIGRT RAG G AI + + I + + Sbjct: 335 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 394 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 ++ P +A ++ K++K Sbjct: 395 QMEEIQLPQRDEVAAARVAKLGAELETEKESKA 427 Score = 41.4 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 3/116 (2%) Query: 337 NSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATL--EAEMATLCIDGGKKAK 394 G + F E+ I + + N + T + G++ Sbjct: 457 QQGKSPLFYVGED-PMIAAIERDKNRRKERREDRDNGRGDRNFNTQDWDTYQLQVGREQG 515 Query: 395 MRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT 450 ++ D++GAL ++GL IG I + YV + +A+ + +L +I+ K Sbjct: 516 VQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNSETAGKLSKLRIRQKE 571 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 144/378 (38%), Positives = 204/378 (53%), Gaps = 9/378 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L ++ P L + E GY TP+Q A+ +LAG+D+ A+TG+GKTA F L LL Sbjct: 5 SFADLQLVDP-LLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLL 63 Query: 63 QQIDA------SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 Q++ A + + LVL PTRELA QV + L LP L + GG Q Sbjct: 64 QRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLP-LTSLVIFGGVRVKPQI 122 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 ++L I++ATPGRL+D ++ V L + LV+DEADRMLDMGF + V++ PA Sbjct: 123 EALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPA 182 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRL 235 RQ LLFSAT+ + I A++ DP +E+ ++ + + K LL L Sbjct: 183 ERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHL 242 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + Q +VF TK + + L + G A ++HG+ Q R + L F +GS RVL Sbjct: 243 VESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRVL 302 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARG+DI L VVN+EL PE +VHRIGRT RAG+ G A+S +E + Sbjct: 303 VATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLLAD 362 Query: 356 ISDMLQIKLNWQTPPANS 373 I + + T P Sbjct: 363 IEAFIGRPIPQFTEPGFE 380 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 148/419 (35%), Positives = 237/419 (56%), Gaps = 4/419 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + LP ++ELG+ T + +QA A+P +L G+DV A+TG+GKTAAFGL LL Sbjct: 85 SFDDI-ALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLL 143 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID SL + QALVL PTRELA QVA + A + ++ L GG P+G Q +L Sbjct: 144 AAIDPSLREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALARG 203 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DH+++ + LD + V+DEAD ML MGF++ +++++ +P +RQ L Sbjct: 204 AQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVAL 263 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI ++ +DP+ + + + + Q + + + L R+L+ Sbjct: 264 FSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLATSDA 323 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF T+ + V AL G A S+ GD+ Q++R++ + R +GS +VLVATDVA Sbjct: 324 EAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVA 383 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + LVVNF++ + E +VHRIGRT RAG SG A++F P E + I + Sbjct: 384 ARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIERATK 443 Query: 362 IKLNWQTPPANSSIAT--LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 L P+ ++ L A++ + + +++G + +D ++ Sbjct: 444 QTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELYRELIGQFVAEHDIDPLELAAA 502 Score = 57.2 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 357 SDMLQIKLNWQTPP------ANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGL 410 + KL P A E + + G RP ++GA+TG+ GL Sbjct: 520 EEFTGAKLGEDRSPRGDRDRGPREAAATERGYTSYKVGVGHTHGARPPGIVGAITGEGGL 579 Query: 411 DGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 G DIGKI + P V +R +++ + +++ K+ G+ R+ Sbjct: 580 HGKDIGKIQIFPHFALVQIRGSLSPEQMERISRAKVGGRELRI 622 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 3/381 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F+ N L P L + ELG+ + T +Q +P I +D+ A+TG+GKTAAF L Sbjct: 1 MNLFTETN-LSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ID + Q LVLCPTREL Q+ +++ ++++ N K + GG Q SL Sbjct: 60 PILDMIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + P IIV TPGR++D + + + + LV+DEAD ML MGF D ++ ++R P ++ Sbjct: 120 RDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKH 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT + + IS P I + S + + I+ +FY + K L+RL+ Sbjct: 180 TYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLIDA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + Q V D L + G +A +LHGDL Q RD + +F + +LVAT Sbjct: 240 NPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ SL V+++ L DPEV VHR GRT RAG G+++S PEE+++ I Sbjct: 300 DVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKM 359 Query: 359 MLQIKLNWQTPPANSSIATLE 379 +I + + P +I + Sbjct: 360 STKIDIVEKKVPTGDAIIKAQ 380 Score = 43.0 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGD--IGLDGADIGKIAVHPAHVYVAVRQAVAHK 436 +M + GKK +++ D+L + DIG I + + V ++ + Sbjct: 491 NTDMVRFFFNLGKKDQLKKMDMLEIINKSTAKSKKRPDIGDIEILEKFSFFEVEKSFKDE 550 Query: 437 AWKQLQGGKIKGKTCRVRLL 456 K +Q K KGK R + Sbjct: 551 VMKGMQSQKFKGKEMRAEIA 570 >UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R9Z2_9FIRM Length = 472 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 169/474 (35%), Positives = 243/474 (51%), Gaps = 24/474 (5%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L + L+ LGY VQ A +P +LA +DV VQAKTGSGKTA+F + +LQ Sbjct: 3 FKDFG-LEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQ 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 Q+ + Q+L+L PTRELA Q+ E ++ K L + G PF Q+ LQ Sbjct: 62 QLIWNEKLPQSLILAPTRELAMQIQTEFDQIGA-KKRIKSLAIYGKFPFRFQKQDLQQRT 120 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+I ATPGR+LDHL++ T ++ +V+DEAD MLDMGF D ++ V+ + P R T LF Sbjct: 121 HVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTALF 180 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ I ++ R DPL+I +++ + IE Y+ + + K L LL Sbjct: 181 SATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLLGKETVE 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F T++ + + L LHG L Q +R L F +G R+LVA+DVAA Sbjct: 241 SAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVAA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+DI + V+N + E ++HR+GRTAR SG AISF + ++ + D L Sbjct: 301 RGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEKLMQLEDYLGY 360 Query: 363 KLNWQTPPA-------------------NSSIATLEAEMATLCIDGGKKAKMRPGDVLGA 403 L+ + A L ++ + I GK K+R GD+ GA Sbjct: 361 SLSMRDASTELLTQDYDLSYLSQSSERKEDKGAALRKDVLRIYIGAGKAKKLRAGDIAGA 420 Query: 404 LTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 L G+ D+G I V H YV + A K L+ +IKGK RV + K Sbjct: 421 LCQLEGICFDDVGVIQVQEHHSYVDILHGKGEVALKSLK--RIKGKEVRVEIAK 472 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 192/368 (52%), Gaps = 12/368 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F P + + + G+ T +QA P ++G+D+ A+TGSGKT A+ L + Sbjct: 159 FEE-GGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVV 217 Query: 64 QIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 I+ + ALVL PTRELA Q+ + + + GG P G Q Sbjct: 218 HINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNT-HVRNTCIFGGAPKGQQARD 276 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I++ATPGRL+D L++GT SL LV+DEADRMLDMGF I +++ R Sbjct: 277 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 336 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLL 236 Q L++SATWP+ + ++ + + + I S A I Q K+ L +LL Sbjct: 337 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLL 396 Query: 237 ---SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 S + ++F TKK + ++ G A ++HGD Q++RD L F NG Sbjct: 397 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 456 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATDVAARGLD+ ++ V+N++ + E +VHRIGRT R+ N+G A + A +A Sbjct: 457 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 516 Query: 354 NIISDMLQ 361 N + +L+ Sbjct: 517 NDLIQVLR 524 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 154/378 (40%), Positives = 210/378 (55%), Gaps = 7/378 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L L P L ++ GY TPVQ A+PA L+G D+ V + TGSGKTAAF L + Sbjct: 2 SFSELG-LDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60 Query: 63 QQIDASLF----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 Q++ A + LVL PTRELA QV + + + L GG P+G+Q Sbjct: 61 QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L ++VATPGRL+DHL++G + L LV+DEADRMLDMGF D I + PA R Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSS-KGKIPLLQRLL 236 QTLLFSAT + ++ + RD IEI++ IEQ+ + K LL LL Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALL 240 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + +VF +TK+ + + D L E G ++ +LHGD++Q R++ L R G RVLV Sbjct: 241 RDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLV 300 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARG+D+ S+ V+NF+L E +VHRIGRT RAG +G+A+SF E I Sbjct: 301 ATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNI 360 Query: 357 SDMLQIKLNWQTPPANSS 374 ++ T P Sbjct: 361 ERYTGNRIEVHTLPGLEP 378 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 139/390 (35%), Positives = 211/390 (54%), Gaps = 17/390 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F LP L +N G+ TP+Q P L+G+D+ A+TGSGKT AF + Sbjct: 211 IQTFDE-ACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIP 269 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A + L+L PTRELA Q+ E R R T + GG G Q Sbjct: 270 AVIHINAQPYLQKGDGPIVLILAPTRELALQIKAECDRFGRSSRITNT-CVYGGTQRGPQ 328 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +LQ+ I +ATPGRL+D L+ GT +L + LVMDEADRMLDMGF + ++ Sbjct: 329 ARALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIR 388 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRD-PLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQ 233 RQTL++SATWP+ + ++ + + P+ + + + A I+Q + K L Sbjct: 389 PDRQTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLL 448 Query: 234 RLLSLHQ-------PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR 286 L+ + ++FC+TK+ + L G ALS+HGD +Q +RD L + Sbjct: 449 ALMQAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQ 508 Query: 287 FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 F G + +++ATDVA+RGLD+K ++ V+N++ E +VHRIGRT RAG SG+A SF + Sbjct: 509 FKTGRSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFS 568 Query: 347 PEEAQRANIISDMLQIKLNWQTPPANSSIA 376 P++ + A + + L+ + N P A +IA Sbjct: 569 PDKGKLARQLVNCLR-EANQSVPEALETIA 597 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 149/425 (35%), Positives = 231/425 (54%), Gaps = 4/425 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 AF++L LP L+ + +G+ + T +QA +P +LAGKDV +A+TG+GKTAAFGL L Sbjct: 16 AFASLG-LPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPAL 74 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +ID S+ + Q +VL PTRELA QVA + + + ++ TL GGQ +G Q L+ Sbjct: 75 AKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERG 134 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGRL+DHL++ ++ LD L V+DEAD ML+MGF + I ++ P + Q L Sbjct: 135 AQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCL 194 Query: 183 FSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI I+ R +DP I A I Q ++ S K+ L+R+ + + Sbjct: 195 FSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEY 254 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + ++F T+ D + + L G AL+L+GDL Q R++ + + +G + +LVATDV Sbjct: 255 DAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVV 314 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDI + LV+N++L D E +VHRIGRT RAG G++I+F P E + Sbjct: 315 ARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTN 374 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIA 419 + P I + E + + K +++ + + + D+ Sbjct: 375 GTVLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMREIVEGMAAESEVSMIDLAAAL 434 Query: 420 VHPAH 424 + Sbjct: 435 LFQKQ 439 Score = 60.7 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 N P + + + + T ++ GK+ RPGD++GA+ +I LD + IG I +H H Sbjct: 498 NRDEKPRKAKVNRSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYIGAINLHDKH 557 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 +V + + + + QL+G +++ + + Sbjct: 558 SFVQLPKGIPTDLFNQLKGVRVRRQPLSI 586 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 154/384 (40%), Positives = 232/384 (60%), Gaps = 3/384 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F ++ ++ P L G + TPVQ A+P +L+G+DV QA+TG+GKT AF L + Sbjct: 3 TEFISMGII-PELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ+ID Q QAL+L PTRELA Q+ EL++LA + K+L GGQ Q L + Sbjct: 62 LQRIDIDKEQVQALILTPTRELAIQITSELKKLAAAV-GAKVLAAYGGQDVDAQIRKLNN 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 +PHI+VATPGRL+DH+++ T++L L LV+DEAD+ML MGF + +++ P +RQT+ Sbjct: 121 SPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTM 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I ++ + P+ I+I S + L I+Q ET+ +G+ L ++ + Sbjct: 181 LFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQR 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P V+FC TK + + L ++G + LHGDL Q R+Q + RF + ++LVATDV Sbjct: 241 PYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V NF++ D E+++HRIGRT RAG G AI+ +P + I + Sbjct: 301 AARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERSI 360 Query: 361 QIKLNWQTPPANSSIATLEAEMAT 384 L +T A+ +I A ++ Sbjct: 361 NAILERRTIEADGTIVKNTAPRSS 384 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 163/467 (34%), Positives = 237/467 (50%), Gaps = 18/467 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT FS L L P L + + GY T TP+QAAA+P LAG+DV A+TG+GKTAAF L Sbjct: 1 MTEFSELG-LSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLP 59 Query: 61 LLQQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 L+ ++ A +ALV+ PTRELADQVA + A+ L GG FG Q Sbjct: 60 LIDKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTK-LSWALLIGGVSFGDQEK 118 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L +++ATPGRLLDH ++G + + + LV+DEADRMLDMGF I+ + + P Sbjct: 119 KLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPK 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKG---KIPLLQ 233 +QTL FSAT P I ++ + +DP+ IE I Q + S K L+ Sbjct: 179 KQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALR 238 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L+ Q + +VFCN K + V +L G A ++HGDL+Q R +TL F +GS + Sbjct: 239 ALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLK 298 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVA+DVAARGLDI ++ V N+++ + +VHRIGRT RAG SG+ P + + Sbjct: 299 ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGF 358 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR---PGDVLGALTGDIGL 410 + + ++ + P + + T+ +G K+ R P D Sbjct: 359 DKVVKLIG------STPTEEKLDLDYSGAVTIKREGDKRGGGRDRAPRGGDRERGRDRDR 412 Query: 411 DGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + A V A++ A+ A + + RVR + Sbjct: 413 NRAPTEPSDVAAANLEAAITGVPATPVASTVMSDPPAKRPARVRKPR 459 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 150/442 (33%), Positives = 232/442 (52%), Gaps = 6/442 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F L L A + L + G+ TP+Q +P +L+G KD+ QA+TG+GKTAAFGL Sbjct: 1 MEKFRNLG-LSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ + QA+VL PTRELA QVA E+ R + T+ GGQP Q +L Sbjct: 60 PIIENVREGAGHVQAIVLTPTRELAMQVADEIISF-RGSRKVFVATVYGGQPMLPQLKAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR+LDH+++ T+ L +N V+DEAD M +MGF + + +++ A R+ Sbjct: 119 KRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P + I+ + D + + D P E F+E + + + L R++ Sbjct: 179 TLLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDA 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VFC T+ D V L E G A +HGDL Q R+ L+RF ++LVAT Sbjct: 239 QPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L VVNF L DP+ VHR+GRT RAG G+A++ P E + I+ Sbjct: 299 DVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYITK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + +++++ + P + ++ + +A + A G+D I + Sbjct: 359 ITKLRVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGKHLSYLDLAHELLEGVD--PIEAV 416 Query: 419 AVHPAHVYVAVRQAVAHKAWKQ 440 A H V +++ ++ Sbjct: 417 AALLKHSQGGVLDKRSYRKIEE 438 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 133/381 (34%), Positives = 197/381 (51%), Gaps = 13/381 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F P L + G+ T +Q P L+G+D+ A TGSGKT ++ L Sbjct: 112 ITTFDEAG-FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLP 170 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A LVL PTRELA Q+ E + + + GG P Q Sbjct: 171 GIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFG-HSSRIRNTCVYGGVPKSQQ 229 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L I++ATPGRL+D L+ G +L + LV+DEADRMLDMGF I ++ Sbjct: 230 IRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQTL++SATWP+ + ++ DP+ +++ S + A I Q S K L Sbjct: 290 PDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLN 349 Query: 234 RLLS---LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 + L ++F +TK+ C + L E G AL++HGD +QR+RD L F NG Sbjct: 350 KYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNG 409 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + ++VATDVAARG+D+K + V+N+++ + E +VHRIGRT RAG +G AISF + Sbjct: 410 RSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469 Query: 351 QRANIISDMLQIKLNWQTPPA 371 + +++ + N PP Sbjct: 470 GLGAKLISIMR-EANQNIPPE 489 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 150/395 (37%), Positives = 219/395 (55%), Gaps = 3/395 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L + P L ++++G+ T T VQ+ A+P IL +D+ V +KTGSGKTA FG+ + Sbjct: 3 NTFNELGISAP-ILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ + Q L+L P RELA QV ++R++A++L + K + G ++ L Sbjct: 62 LQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILNK 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+ TPGR+ DH+ GT+S + LV+DEADRMLDMGF D + +++ P R TL Sbjct: 121 GVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITL 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I I R +P+ IEI+S T + I Q +Y + K L RLL + + Sbjct: 181 LFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEK 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P SC++FCNTK V L + G S+ +LHGD+ Q R T+ +F G +LVATDV Sbjct: 241 PESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+ I+ L LV+N+++ D + +VHRIGRT RAG+ G A S ++ I + + Sbjct: 301 AARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEHI 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 + + P + E A K K Sbjct: 361 GTLILEEELPDEEAFTKAREEAAQWIKANSLKEKA 395 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 159/396 (40%), Positives = 220/396 (55%), Gaps = 9/396 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +++ L P+ L L ELGY T T +QAAA+P + GKD+ A+TG+GKTAAF L +L Sbjct: 5 NFESIS-LNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPIL 63 Query: 63 QQIDASL----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 ++ + +AL+L PTRELA Q+ +R AR+L + + GG P Q Sbjct: 64 HRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYL-RLRTGVIMGGVPAHPQIKM 122 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ P I+VATPGRL+D +G + LD + T V+DEADRMLDMGF D I + P Sbjct: 123 LRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDH 182 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLS 237 QTLLFSAT I A++ R+ R+P+ IE+ ++ I Q+ K LL L Sbjct: 183 QTLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFK 242 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK+ V + L +G SA ++H QR R + L+ F G VLVA Sbjct: 243 ENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVA 302 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARG+D+ + V+N+EL DPE +VHRIGRTARAG SG A+SFC +E + I Sbjct: 303 TDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIE 362 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + + + SIA A M + G K Sbjct: 363 KLTKSSIAICDNNPFHSIA--VASMHKVAKAGNKPQ 396 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 151/383 (39%), Positives = 222/383 (57%), Gaps = 7/383 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 ++F+ L + P Q T L LGY TP+Q+ A+P +L G D+ +A+TG+GKTA+F L + Sbjct: 4 SSFAELALCPELQFT-LKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPI 62 Query: 62 LQQIDASL----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 ++++ + +ALVL PTRELA QVA R L +++++ GG P Q Sbjct: 63 IEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIK 121 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ I+VATPGRLLD L++ +SL+ L LV+DEADRMLD+GF D I ++ +A Sbjct: 122 RLKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADD 181 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLL 236 RQTLLF+AT E++ ++ +P I++ + I Q Y+ K +L L+ Sbjct: 182 RQTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLI 241 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + +VF TKK + L + G +A ++HG+ QR+R + L F G VLV Sbjct: 242 TEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLV 301 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARGLDI+SL VVN++L PE +VHRIGRT RAG +G A+S AP E + I Sbjct: 302 ATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRI 361 Query: 357 SDMLQIKLNWQTPPANSSIATLE 379 +++ K+ + P LE Sbjct: 362 EKLIKQKIKLRPVPRIEDGKRLE 384 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 160/420 (38%), Positives = 225/420 (53%), Gaps = 10/420 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F + + P L + E GY MTPVQ A+PAI G+DV A+TG+GKTAAF L +L Sbjct: 2 KFESFS-FAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60 Query: 63 QQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q++ Q AL+L PTRELA QVA + ++ + N +LT+ GG Q Sbjct: 61 QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHM-NISVLTIYGGMKMATQAQ 119 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ IIVATPGRLL+H+ +SL + LV+DEADRMLDMGFS I +++ Sbjct: 120 KLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKK 179 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLL 236 RQ LLFSAT+ A+ ++ + P I D + + Q Y + K LL L+ Sbjct: 180 RQNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELI 239 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VF T+ D + LN G + +HG+ Q R + L F G RVLV Sbjct: 240 GTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLV 299 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 AT+VAARGLDI+ LE VVN++L + E +VHRIGRT RAG +G+AISF + EE + I Sbjct: 300 ATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA-LTGDIGLDGADI 415 ++ K+ T P +++ E + T+ K D +GA + G+ + G + Sbjct: 360 EKLIGQKIRRITVPGYE-VSSRELLLKTIEKRRSFGKKQERNDNVGAQVVGEKNMQGRRV 418 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 147/404 (36%), Positives = 205/404 (50%), Gaps = 15/404 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS + P ++ +N G+ TP+QA + P L+G+DV A+TGSGKT A+ L + Sbjct: 80 SFSEAS-FPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPSI 138 Query: 63 QQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I AL+LCPTRELA QV R L + GG P G Q Sbjct: 139 IHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGR-LARINCACIYGGSPKGPQLR 197 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L I VATPGRLLD L+ +L+ + LV+DEADRMLDMGF I +I Sbjct: 198 ELSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCP 257 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQT+++SATWP+ I ++ RD + I I S+D I+Q + K L +L Sbjct: 258 RQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKL 317 Query: 236 LS---LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 LS +VF TKK + L G L +HGD Q +RD+ L F +G Sbjct: 318 LSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRI 377 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 VL+ATDVAARGLDI ++LV+N++ + E +VHRIGRTAR+G +G A +F ++ Sbjct: 378 PVLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASNIRQ 437 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR 396 + + +L+ P I +A A + K + R Sbjct: 438 SPNLIALLR---EANQPINPDLIQLGDAARAEMAQKHRGKMRGR 478 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 142/411 (34%), Positives = 209/411 (50%), Gaps = 12/411 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F + LPP L L G+ + TP+QA P L +D+ AKTGSGKT + + Sbjct: 436 TFESSG-LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 494 Query: 63 QQI----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + S L+L PTRELA Q+ E R R L GG P G Q Sbjct: 495 ILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGR-SSRISCTCLYGGAPKGPQLKE 553 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I+VATPGRL D L+ + ++ LV+DEADRMLDMGF I ++ P R Sbjct: 554 LERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 613 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQRL 235 QTL+++ATWP+ + I+ + +P+ + I D A I Q K L+++ Sbjct: 614 QTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQI 673 Query: 236 LS-LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L + S ++FC+TK+ C + ++ A+ +HGD Q +RD L +F +G + V Sbjct: 674 LRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCV 732 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 L+ATDVAARGLDIK + +V+N++ E +VHRIGRT RAG +G+A +F ++ + A Sbjct: 733 LIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAP 792 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALT 405 + +L+ N Q PP IA ++ + D G T Sbjct: 793 DLIKVLE-GANQQVPPQVRDIAMRGGGGGGPGYSQDRRGMVNRFDSGGGGT 842 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 151/383 (39%), Positives = 211/383 (55%), Gaps = 11/383 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M FS+L L ++ L + GY TP+QAAA+P LAG D+ A+TG+GKTAAF L Sbjct: 25 MNPFSSLG-LGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP 83 Query: 61 LLQQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 L+ + ++ + LVL PTRELADQ+ ++ + LP + L GG Sbjct: 84 SLELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNM 142 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q L+ I+VAT GRLLDH+++ ++L+ + +V+DEADRMLDMGF D I +++ Sbjct: 143 DKQTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 202 Query: 173 FAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPL 231 P RQTLLFSAT+ I ++ P +E+ + + +EQ + K L Sbjct: 203 MLPKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSL 262 Query: 232 LQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGS 291 L+RL+ + +VFC TK+ V L +A S+HGD Q+ R +TL F G+ Sbjct: 263 LERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGT 322 Query: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 RVLVATDVAARGLDI L V+N+EL PE +VHRIGRT RAG G+AIS E + Sbjct: 323 LRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQK 382 Query: 352 RANIISDMLQIKLNWQTPPANSS 374 I ++ LN + Sbjct: 383 MFEAIKELTGSDLNVERIEGFEP 405 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 3/383 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + P + +LGY T TP+Q +P L G+DV A+TG+GKTAAF L +L Sbjct: 2 SFDSF-RFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60 Query: 63 QQIDASLF-QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 Q++ + +A+++ PTRELA+Q+ G + L ++ + +TL GG + Q L+ Sbjct: 61 QRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYT-GLRSVTLYGGVGYQGQIQRLRR 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I V PGRLLDHL++GT++L+ L+ L++DEAD+M DMGF + ++R APA RQT+ Sbjct: 120 GVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTM 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 LFSAT P+AI A++ R+P I+I + + + Y + K LL LL Sbjct: 180 LFSATMPDAIRALAREALREPQTIQIGRSAPVSTVTHAIYPVAEHLKTALLIELLRHTDT 239 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S ++F TK Q + D L +G A +L G++ Q R L F +G ++LVATD+A Sbjct: 240 GSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDIA 299 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ + V+N+++ E + HRIGRT RA +G A + + I ++ Sbjct: 300 ARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLIG 359 Query: 362 IKLNWQTPPANSSIATLEAEMAT 384 L +T P A A A Sbjct: 360 EPLKRETVPGFDYHAAAPAHDAR 382 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 AF N P + L + + TP+Q P L+G+D+ A+TGSGKT A+ L + Sbjct: 93 AFHHAN-FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151 Query: 63 QQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I+ + + LVL PTRELA QV + K + GG P G Q Sbjct: 152 VHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIR 210 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ I +ATPGRL+D L+ G +L LV+DEADRMLDMGF I ++ Sbjct: 211 DLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 270 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQTL++SATWP+ + ++ RD I + + + A I Q K L +L Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330 Query: 236 LSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 + + + ++F TK+ C + + G A+ +HGD Q +RD L F +G A Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 +L+ATDVA+RGLD++ ++ V+N++ E +VHRIGRTAR+ N G A +F P ++ Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQ 450 Query: 353 ANIISDMLQ 361 A + +L+ Sbjct: 451 ARELIKVLE 459 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 136/450 (30%), Positives = 223/450 (49%), Gaps = 12/450 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 + F L V L L G+ +P+QA +P +L G D+ QA+TG+GKTAAFG+ Sbjct: 4 LDNFRKLGV-SEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGI 62 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ + + QAL+L PTREL+ Q+A EL L + +I GGQ +Q L Sbjct: 63 PVIELCEGGGKKPQALILSPTRELSIQIAEELNSL-KGKRKLRIAPFYGGQMIEIQLQRL 121 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ TPGR++D +++G + L V+DEAD MLDMGF + I+ ++ + ++ Sbjct: 122 RDGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKR 181 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI-EQQFYETSSKGKIPLLQRLLSL 238 L+FSAT P I I+ R R + +S + EQ ++E + K L R++ + Sbjct: 182 MLMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRIIDV 241 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 Q +VFC T+ D + + L G +LHGD+ Q R + + +F + ++L+AT Sbjct: 242 EQDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIAT 301 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L V+N+ + E +VHRIGRT RAG +G AI+F P E ++ +I Sbjct: 302 DVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMIQR 361 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 ++ + P I ++ + + + A + A A Sbjct: 362 EAHTEIRREELPQGRDIVEMKKQHFSEQLSEAISAGQHQEYLDFADELIEKTGNASAALA 421 Query: 419 AVHPA--------HVYVAVRQAVAHKAWKQ 440 A+ YV + + K W+ Sbjct: 422 AMLQLRFKGELLPQSYVEIGRKRDRKTWES 451 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 142/375 (37%), Positives = 196/375 (52%), Gaps = 5/375 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + L N+ LGY TP+QA A+P + G+D+ A+TG+GKTAAF L ++ Sbjct: 2 SFDSF-CLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60 Query: 63 QQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + +AL+L PTRELA+Q+ L R + + GG Q +L Sbjct: 61 HRLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGT-RLRAAVIYGGVGMFPQTRAL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + IIVA PGRLLDH+ +G V DAL TLV+DEAD M DMGF I ++ P+ RQ Sbjct: 120 RQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 TLLFSAT P AI+ ++ DP+ + I L +E Y S K PLL LL Sbjct: 180 TLLFSATMPPAISGLAHETLTDPVTVRIGHMAPLSTVEHAIYPISHTQKAPLLLHLLEEA 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 S +VF TK + + L G A L G+L QR R + F GS +VLVATD Sbjct: 240 GKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVATD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARG+D+ + VVNF++ E + HRIGRT RA + G A +F E+ I Sbjct: 300 IAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESH 359 Query: 360 LQIKLNWQTPPANSS 374 ++ L + Sbjct: 360 MKKPLPRREVEGFEP 374 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 136/369 (36%), Positives = 200/369 (54%), Gaps = 11/369 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F T PP L + G+ + TP+QA + P L +DV AKTGSGKT + L Sbjct: 149 ITSFET-GGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLP 207 Query: 61 LLQQI----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 I + LVL PTRELA Q+ E + R L GG P G Q Sbjct: 208 GFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGR-SSRISSTCLYGGAPKGPQL 266 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L ++VATPGRL D L+ +SL ++ LV+DEADRMLDMGF I +++ P Sbjct: 267 RDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPP 326 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQ 233 RQTL+++ATWP+ + I+ + P+ + I S D A I Q + K+ L+ Sbjct: 327 RRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLE 386 Query: 234 RLLSLHQPS-SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 ++L ++FC TK+ C + L A ++HGD Q +R++ L F +G + Sbjct: 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRS 445 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 +LVATDVAARGLDIK + +V+N++ E +VHRIGRT RAG +G+A +F ++++ Sbjct: 446 PILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKY 505 Query: 353 ANIISDMLQ 361 A + +L+ Sbjct: 506 AADLIKILE 514 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 141/395 (35%), Positives = 197/395 (49%), Gaps = 5/395 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + L + + N+ GY T TP+QA A+P ++ G D+ A+TG+GKTAAF L +L Sbjct: 2 SFDSF-CLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60 Query: 63 QQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + + L+L PTRELA+Q+ R + + GG Q +L Sbjct: 61 HRLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGT-RLRATVIYGGVGMFPQVRAL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +IVA PGRLLDHL +G V D L TLV+DEAD M DMGF I ++ PA RQ Sbjct: 120 RQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 TLLFSAT P AI+ ++ DP+ + I L +E Y S K PLL LL Sbjct: 180 TLLFSATMPPAISGLAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLLGEA 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 S +VF TK + + L G A L G+L QR R + F GS ++LVATD Sbjct: 240 GKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARG+D+ + VVNF++ E + HRIGRT RA G A +F E+ I Sbjct: 300 IAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIESH 359 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 ++ L + A + + Sbjct: 360 MKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQ 394 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 151/373 (40%), Positives = 208/373 (55%), Gaps = 8/373 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L V P Q+ L GY TP+Q A+P IL GKD+ A+TG+GKTAAF + Sbjct: 1 MTDFDKLGVAKPFQI-ALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVP 59 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 LLQ++ A+ ++L+L PTRELADQ+ ++ A + GG PF Q Sbjct: 60 LLQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYA-GRTKMYTSCVVGGVPFPPQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +LQ ++VATPGRLLD +K VS D L V+DEAD+MLD+GF ++++ P Sbjct: 119 FHALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQR 234 RQTL FSAT P I +S R +P+ + + + QQ K PLL+ Sbjct: 179 KKRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKE 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 LL + +VF TKK + LN G A ++HGD+ Q +R +TL +F G + Sbjct: 239 LLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKT 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATDVAARG+D+ + V+NF++ E +VHRIGRTARAG SG AI+FC PE+ Sbjct: 299 LVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLR 358 Query: 355 IISDMLQIKLNWQ 367 I ++ K+ Sbjct: 359 AIQKLIGKKIAEM 371 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 149/372 (40%), Positives = 214/372 (57%), Gaps = 2/372 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L L L LN+LGY +P+Q +P +L G DV A+TGSGKTAAF L LL Sbjct: 7 SFSELG-LKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLL 65 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID L Q ++L PTRELA Q+ L++++ I+ L GGQ + +Q SL+ Sbjct: 66 NNIDLKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSLKRN 125 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P I+V TPGR+LD L K ++L + + V+DEAD ML MGF + ++++ + QT+L Sbjct: 126 PQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQTIL 185 Query: 183 FSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI I+ R + P I I S + P I+Q ++ KI L R L + Sbjct: 186 FSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFLEVEIF 245 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + ++F TK V D L + G ++ SL+GD+ Q R++TL RF G +LVATDVA Sbjct: 246 DAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVATDVA 305 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ + LV+N+++ D E ++HRIGRT RAG +G A+ F E + I ++ Sbjct: 306 ARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNIERNIK 365 Query: 362 IKLNWQTPPANS 373 KL+ P+ Sbjct: 366 EKLSQIKLPSVE 377 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 138/376 (36%), Positives = 210/376 (55%), Gaps = 5/376 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F++++ L + L + GY TP+QA +P L G DV QA+TG+GKTA+F + +L Sbjct: 13 TFASMD-LSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPIL 71 Query: 63 QQIDASLFQT--QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + +D QAL+L PTRELA QV E+ +L+ L + GG+P Q D L+ Sbjct: 72 ELLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLK-INCAAVYGGKPIKSQVDKLK 130 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H++V TPGR+LDH+ +GT+ + +V+DEADRMLD+GF I+ +++ P RQT Sbjct: 131 KGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQT 190 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LL SAT P IA ++ R +P + D ++ IEQ+++ K LL +LL Sbjct: 191 LLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLRE 250 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P +VFC TK+ V L + + ++HGDL Q RD+ + F +GS R LVATD Sbjct: 251 EPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATD 310 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 V RG+D+ ++ +VNF++ + +VHR+GRT R G G+A +F P+E I + Sbjct: 311 VIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEER 370 Query: 360 LQIKLNWQTPPANSSI 375 + L + Sbjct: 371 INKLLKRDEMRDFEPV 386 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 154/370 (41%), Positives = 215/370 (58%), Gaps = 8/370 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS + L A L L EL Y T +Q A+PAI+ GKD+ A+TG+GKTAAF L +L+ Sbjct: 3 FSDFD-LSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILE 61 Query: 64 QI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 ++ + QT+ LVL PTRELA+QV ++ A+ LP K L + GG Q + Sbjct: 62 KLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLP-FKTLPVFGGVSSYPQIQA 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I+VATPGRLLD + +SL+ ++TLV DEADRM DMGF I +++ P R Sbjct: 121 LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLS 237 Q LLFSAT+P + ++ + +DPL I+I+ ++ I Q+ K+ LL + Sbjct: 181 QNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFG 240 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK+ L+ +G S +LHGD Q R +TL +F NG ++LVA Sbjct: 241 VESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVA 300 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLDIK L V+N EL PE +VHRIGRT RAGN G+AIS +E + I Sbjct: 301 TDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIE 360 Query: 358 DMLQIKLNWQ 367 ++ KL + Sbjct: 361 KLIDKKLIRE 370 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 191/371 (51%), Gaps = 8/371 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + FS L L + E GY TP+Q A+P +L D+ A+TG+GKTAAF L Sbjct: 5 IETFSDLK-LDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALP 63 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 ++ + + Q ++LVL PTRELA QV ++ + + GG Q Sbjct: 64 MIHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQ-IRTAVIFGGVGQNPQ 122 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 ++ +++ATPGRL+D + + VSL L V+DEADRMLDMGF I +I + P Sbjct: 123 AKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLP 182 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQR 234 RQ L FSAT P I ++ + +P+ I++ + I Q T K LL Sbjct: 183 KRRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLH 242 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L ++F TK + + LN+ G +HG+ Q R + L F +G R Sbjct: 243 LFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRA 302 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+DI + V+N+E+ + PE +VHRIGRTARAG +G+AI+ +E Sbjct: 303 LVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIK 362 Query: 355 IISDMLQIKLN 365 I ++ I + Sbjct: 363 DIEKVIGISIP 373 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 147/366 (40%), Positives = 217/366 (59%), Gaps = 9/366 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F TL L P L L++L + + TP+Q +P I+ G+DV A+TGSGKT F L L Sbjct: 2 SFETLG-LNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60 Query: 63 QQ---IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + + + Q LVL PTRELA Q+ R ++L ++ + L GG Q D L Sbjct: 61 HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYL-RSRTVLLVGGTDMRRQIDFL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ATPGRL+DH+Q+GT++L ++T+V+DEADRMLDMGF ++ +++ RQ Sbjct: 120 RRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSS-KGKIPLLQRLLS 237 TLLF+AT P I ++ Q+DP+ I +++ A P I+Q+ S K LL+ +L+ Sbjct: 180 TLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILT 239 Query: 238 LHQ--PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 Q ++F TK+ + + + L G + +LHGD Q R++ L +F G R+L Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI ++ V+N++L PE +VHRIGRT RAG SG AISFC P + Sbjct: 300 VATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRD 359 Query: 356 ISDMLQ 361 I +L Sbjct: 360 IERLLG 365 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 160/423 (37%), Positives = 244/423 (57%), Gaps = 9/423 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F TL LP + +LG+ T + +QA A+PA+L G+D+ A+TG+GKTAAFGL LL Sbjct: 50 GFDTLG-LPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLL 108 Query: 63 QQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++A QALVL PTRELA QVA + A LP+ ++L++ GG P+ Q+ +L Sbjct: 109 ASVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRAL 168 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + H++V TPGR++DHL++G + LD LV+DEAD ML MGF++ ++ + +AP RQ Sbjct: 169 RDGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQ 228 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSL 238 LFSAT P AI AI+ DP+ I + + + Q + + K+ L R+L+ Sbjct: 229 VALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRILAT 288 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + +VF T+ + V AL E G SA ++ GD+ Q++R++ + R +G+ VLVAT Sbjct: 289 SDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVAT 348 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ + LVVNF++ + E +VHRIGRT RAG +G A+SF P E + I + Sbjct: 349 DVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIEN 408 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGL--DGADIG 416 +++ L P+ ++ A A L + + D+ L ++ DG + G Sbjct: 409 TIKVSLEEIDIPSPRDVSAHRA--ARLLDSAPARTQAGRLDLYKQLVRNLVTTGDGEEAG 466 Query: 417 KIA 419 + Sbjct: 467 VVD 469 Score = 51.8 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%) Query: 383 ATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQ 442 + G K + PG ++GA+TG+ GL GAD+GKI + + V + + +L Sbjct: 557 TRYRVAVGHKDGVNPGGIVGAITGEGGLTGADVGKIDIFGSFSLVDITAPLDGAQLDRLS 616 Query: 443 GGKIKGKTCRVRLLK 457 ++ G+ R+ + + Sbjct: 617 RARVAGRALRLTVDR 631 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 534 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 134/352 (38%), Positives = 200/352 (56%), Gaps = 10/352 (2%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG---LLQQIDASLF-QTQ 73 + + G+ TP+QA + P L +D+ AKTGSGKT + + LL+++ + Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 305 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133 LVL PTRELA Q+ E ++ R + L GG P G Q L+ I+VATPGRL Sbjct: 306 VLVLSPTRELATQIQDEAKKFGR-SSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 364 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 D L+ VSL ++ LV+DEADRMLDMGF I +++ RQTL+F+ATWP+ + Sbjct: 365 NDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRK 424 Query: 194 ISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS-SCVVFCN 249 I+ + +P+ + I +TD A I Q + K L ++L +P ++FC+ Sbjct: 425 IASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCS 484 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 TK+ C + L A ++HGD Q +RD L F +G +LVATDVAARGLDIK Sbjct: 485 TKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKD 543 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 + +VVN++ E +VHRIGRT RAG +G+A +F ++++ A+ + +L+ Sbjct: 544 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 595 >UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium difficile RepID=Q185X0_CLOD6 Length = 497 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 154/493 (31%), Positives = 242/493 (49%), Gaps = 42/493 (8%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L +L LGY + VQ +P +L G+++ V++KTGSGKTA+F + L Sbjct: 4 TFEKFK-LNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLC 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + I+ QAL++ PTRELA QV E+ + R L + + G Q Q L+ Sbjct: 63 ENINVDYNNIQALIVVPTRELALQVKDEISDIGR-LKKVRCSAIFGKQSIKDQIAELKQR 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+VATPGR+LDH+ +G++ L+ + LV+DEAD+M + GF + ++ ++ P + L Sbjct: 122 VHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEI-----DSTDALPPIEQQFYETSSKGKIPLLQRLLS 237 FSAT E I I + D I I D+ I+ + + + + K LL+ L+ Sbjct: 182 FSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIY 241 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 P S ++FCNTK+ + + +++ G LH DL Q R + F N +LV+ Sbjct: 242 SENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVS 301 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 +DVA+RG+ I + LV+N+++ D E ++HRIGRT R GNSG AI+ ++ + I Sbjct: 302 SDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENIE 361 Query: 358 DMLQIKLNWQTPPANSSIA-----------------------------------TLEAEM 382 + K+N T S I +E+E+ Sbjct: 362 TYIGYKINELTDIEQSRITHGKVLFEEYSKGILKKVSKRKKVDKNSYKSKDIKLNIESEV 421 Query: 383 ATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQ 442 L ++ GKK K+R D++GA + G+ DIG I V YV + K+ + Sbjct: 422 VKLYLNAGKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKYK 481 Query: 443 GGKIKGKTCRVRL 455 IK K +V+ Sbjct: 482 EIPIKKKMVKVKR 494 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 161/424 (37%), Positives = 227/424 (53%), Gaps = 2/424 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L+ LP L+ L LGY T + +QA +PA+L G+DV QA+TG+GKTAAF L LL Sbjct: 10 TFAELS-LPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLL 68 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++D + Q LVL PTRELA QVA + R + ++L+LCGGQ + Q L+ Sbjct: 69 SRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRG 128 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +IV TPGR++DHL +G++ LD LN LV+DEAD ML MGF D + V+ P Q + Sbjct: 129 AQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVF 188 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I+ I DPL I I++ T IEQ+ K+ L RLL + Sbjct: 189 FSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPV 248 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF T+ C + + L G +A +L GDL+Q R++T+ R G VL+ATDVA Sbjct: 249 DAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVA 308 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ + V N++L D E + HRIGRT RAG +G+AI+F E +R + + Sbjct: 309 ARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMERVTG 368 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVH 421 ++ P +I E+ + L D G D D+ Sbjct: 369 QQMQEVELPDEDAIRAHRNELFRKRVLDTLARGSDYQRELIDGLVDDGYDPVDLACAMAS 428 Query: 422 PAHV 425 A Sbjct: 429 MARS 432 Score = 53.7 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIG 416 + P A M + G K ++PG ++GAL + G+DG IG Sbjct: 445 ERRSRQSSGRDDKPNRRDRGP-SAGMTRYRVSVGHKDGVKPGQLVGALANEGGIDGGKIG 503 Query: 417 KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 +I + A V + + ++ ++ G+ + Sbjct: 504 RIDIRNAFSVVELPNTLPAAVLSRIAQARVAGRPLEI 540 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 145/378 (38%), Positives = 210/378 (55%), Gaps = 9/378 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L L L+ + GY T TP+QA A+P +LA +DV A+TG+GKTAAF L +L Sbjct: 65 SFSELG-LSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123 Query: 63 QQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + + L+L PTRELA QV R + + L GG FG Q L Sbjct: 124 TLLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHK-LNVALLIGGVSFGDQDTKL 182 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 +++ATPGRLLDH+++G + L + LV+DEADRMLDMGF I+ + + P +RQ Sbjct: 183 LRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 242 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKG--KIPLLQRLL 236 TL FSAT P I + + +P+ +E+ A I Q + + K L+ L+ Sbjct: 243 TLFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELI 302 Query: 237 SL-HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 Q + +VFCN K+D V +L + G + + LHGD++Q R Q L +F G A +L Sbjct: 303 RNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLL 362 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VA+DVAARGLDI ++ V N+++ E +VHRIGRT RAG +G AI ++A+ Sbjct: 363 VASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAA 422 Query: 356 ISDMLQIKLNWQTPPANS 373 I ++ + WQ P Sbjct: 423 IEKLIGNAIPWQGEPLGE 440 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 144/393 (36%), Positives = 216/393 (54%), Gaps = 23/393 (5%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L L + L ++ GY T TP+QA A+PA L G+D+ + A+TGSGKTAAF L + Sbjct: 69 NGFTALG-LSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPI 127 Query: 62 LQQIDA-------------------SLFQTQALVLCPTRELADQVAGELRRLARFLPNTK 102 L Q+ QAL+L PTRELA+QV +R+ + + Sbjct: 128 LHQLSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLY 187 Query: 103 ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMG 162 + L GG + Q +L+ IIVATPGRLLDH+ V+L L LV+DEADRMLDMG Sbjct: 188 SVPLVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMG 247 Query: 163 FSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE 222 F+D I+ ++ PA RQT++ SATW + I+ +DP I I A I+++ Y Sbjct: 248 FADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETAH--IDEKVYF 305 Query: 223 TSS-KGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRD 281 + K LL++L+ + ++F TK+ + V + L + A LHGDL Q R+ Sbjct: 306 CDNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRN 365 Query: 282 QTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLA 341 + + +G ++VATDVAARGLD+ ++ V N++L E +VHRIGR+ RAG +G+A Sbjct: 366 RIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIA 425 Query: 342 ISFCAPEEAQRANIISDMLQIKLNWQTPPANSS 374 I+ C+ ++ ++ I+ L+ +N Sbjct: 426 INLCSRDDRRQFGNIARYLKRDINEAQVEGLEP 458 >UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8E9_9FIRM Length = 475 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 160/474 (33%), Positives = 248/474 (52%), Gaps = 24/474 (5%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +N L + L+ LGY PVQ +P IL+ D V+++TGSGKTA+F + ++ Sbjct: 2 TFEQMN-LDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPII 60 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q ++ QALVL PTRELA Q+ + R+ F K L + G QPF Q++ L+ Sbjct: 61 QNLEIDERSPQALVLTPTRELALQIQQDFDRIGTF-KKIKTLPIFGKQPFKFQKEDLKQR 119 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 H+++ TPGR+LDHLQ+ T+ + +V+DEAD ML+M F D + ++++ P T L Sbjct: 120 CHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVTCL 179 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 FSAT+P I +S + P +++ ST+ P I ++ Y + + K L LL+L +P Sbjct: 180 FSATYPAVIQRMSKKYLYKPAKVDLTSTNK-PNILEEAYHVNEEHKELFLLHLLALKKPE 238 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 SC++FC T+ AV L + S +HG + Q +R + RF G R+LV TDVA+ Sbjct: 239 SCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTDVAS 298 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ +E+++N+++ E + HRIGR+ R GLAIS + R + + L Sbjct: 299 RGIDVFKVEMIINYDMPSPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKLEEYLGY 358 Query: 363 KLNWQ-------------------TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA 403 L ++ L + + ++GGK K+RPGD++GA Sbjct: 359 NLPFKDEGEVYLSDLDVLDSLKESNRVVVDKSKDLRKGITKIYLNGGKNKKIRPGDIVGA 418 Query: 404 LTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + G+ DIG I V YV + K L+ IKGKT R++ K Sbjct: 419 ICEIDGVTVDDIGVIQVQDHQSYVDILNDKGKLVLKNLK--TIKGKTLRIQKAK 470 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 141/401 (35%), Positives = 207/401 (51%), Gaps = 6/401 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L + P L ++++GY TP+Q A+PAIL +DV A+TG+GKTA+F L +L Sbjct: 156 TFADLELSEP-ILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPML 214 Query: 63 QQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + + S + ++L+L PTRELA QVA ++L L GG+ Q++ L Sbjct: 215 EILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLK-LNHALLIGGESMADQKEVL 273 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 +++ATPGRLLD ++G + L+ LV+DEADRMLDMGF I+ ++ P +RQ Sbjct: 274 NRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQ 333 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT I ++ P I + ++ I K L++LL Sbjct: 334 TLLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKD 393 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + +VFCN K+D + +L + G SA +LHGDL Q R TL +F N +VLV + Sbjct: 394 PALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCS 453 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+DI L V NF+L + E +VHRIGRT RAG G A S P + A I Sbjct: 454 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEK 513 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 + ++ + + + + R + Sbjct: 514 LTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERE 554 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 146/418 (34%), Positives = 226/418 (54%), Gaps = 7/418 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L L + + +LGY TP+Q A+P IL+G+DV QA+TG+GKTAAF L L+ Sbjct: 9 FSQLG-LNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 64 Q--IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++ Q LVL PTRELA QVA + + A+ +PN + + GGQ +G Q +L+ Sbjct: 68 NMDLESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQ 127 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 ++V T GR++DH++KGT+ LD L LV+DEAD ML MGF D + V+ Q L Sbjct: 128 GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQRL 187 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P IA I R+P I++ + T + Q+F KI L RLL + + Sbjct: 188 LFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEE 247 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 ++F TK V D L +G +++GD++Q R+ + +F + + VLVATDV Sbjct: 248 TDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDV 307 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 ARG+D++ + V+N+++ D + +VHRIGRT RAG G++IS +E + + Sbjct: 308 VARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTLERFT 367 Query: 361 QIKLNWQTPPANSSIAT-LEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADI 415 + P+ +A T K K +++ ++ ++ LD ++ Sbjct: 368 GSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIRDELELDSDEL 425 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 135/372 (36%), Positives = 202/372 (54%), Gaps = 4/372 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L ++ P + + GY TP+Q +P L GKDV QA+TG+GKTAAF + L Sbjct: 88 FADLKLMRP-LMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLN 146 Query: 64 QIDAS-LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + L +V+ PTRELA Q+A E +LA + + + GG Q D L Sbjct: 147 RWRPHTLKGPIGVVMTPTRELALQIANEAEKLA-PSKRFRCVPVYGGTGMQRQLDGLTRG 205 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR+LDHLQ+G++SL + V+DEADRMLD+GF D I+ +++ P+ RQTLL Sbjct: 206 CDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLL 265 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 SAT P++I + R RDP+ + + + I Q ++ K LL+R++ +P Sbjct: 266 MSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKP 325 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 C++F K+ + L A +HGDL Q R++ + F + L+ATDV Sbjct: 326 RQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVM 385 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 +RG+D+ L V+N++L D E +VHRIGRT R G G+AISF PE+ + I M+ Sbjct: 386 SRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMIN 445 Query: 362 IKLNWQTPPANS 373 + Sbjct: 446 RLIEEDRVEGFE 457 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 532 bits (1372), Expect = e-150, Method: Composition-based stats. Identities = 150/411 (36%), Positives = 225/411 (54%), Gaps = 15/411 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L+ L P + E GY + TP+QA A+P LAG+DV A+TG+GKTA+F L Sbjct: 10 MTTFADLD-LNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLP 68 Query: 61 LLQQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 ++ + + ++LVLCPTRELA QVA A+ + TK L + GG F Q Sbjct: 69 MITMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLI-GGVSFKEQEQ 127 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 ++ +++ATPGRLLDH ++G + L+ + +V+DEADRMLDMGF I+ + P + Sbjct: 128 AIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFT 187 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYE-------TSSKGKI 229 RQTL FSAT I I+ +P IE++ IEQ+ E +K K Sbjct: 188 RQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKR 247 Query: 230 PLLQRLLSLHQP--SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRF 287 +L+ ++ + ++FCN K D V +L + +A +HGDL+Q R +TL F Sbjct: 248 DMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGF 307 Query: 288 ANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP 347 +GS +LVA+DVAARGLDI ++ V+N+++ E +VHRIGRT RAG +G+AI+ C P Sbjct: 308 RDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVP 367 Query: 348 EEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 + + I +++ + P ++ E E G + P Sbjct: 368 SDEKYLGAIEGLIKQPIPRAEAPMDAGTPKAETEDKPRRSRRGGRRSEEPK 418 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 138/415 (33%), Positives = 215/415 (51%), Gaps = 11/415 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L L P L + E+GY T TP+Q A+P + G+DV A+TG+GKTA+F L ++ Sbjct: 2 TFADLG-LSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60 Query: 63 QQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + A ++L+L PTRELA QV+ ++ + L GG+ Q+ L Sbjct: 61 DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK-LSMALLIGGESMNEQQKVL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 +++ATPGRL+D ++G++ L + LV+DEADRMLDMGF ++ ++ P RQ Sbjct: 120 DRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSL 238 TL FSAT + I ++ +P + I+ T + +EQ + K L++LL Sbjct: 180 TLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRR 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 ++ +FCN K+D + +L+ G L+LHGD+ Q R + L +F +++V + Sbjct: 240 ETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCS 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ + V NF++ PE ++HRIGRT RAG G A + PE+A+ I + Sbjct: 300 DVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIEN 359 Query: 359 MLQIKLNWQT-----PPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDI 408 +L + A +A AE GGK R G + D Sbjct: 360 LLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADA 414 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 147/387 (37%), Positives = 219/387 (56%), Gaps = 4/387 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L L ++ + G+ +P+QAAA+P ILAG+D+ QA TG+GKTAAFGL L Sbjct: 15 TFDDLG-LKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPAL 73 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 I+ + LV+ PTRELA QV+ EL + R + + +T+ GG + Q D +Q Sbjct: 74 NNINPN-DGVGILVITPTRELATQVSDELFKYGRNI-GARTVTVYGGSSYNRQIDLIQRG 131 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++VATPGRLLD L+K + A + +V+DEAD MLDMGF D I+++ + P++RQTLL Sbjct: 132 ASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLL 191 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I ++ R+ +P I I + I Q++Y + + RL+ Sbjct: 192 FSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEAC 251 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFC TK + + + L+ G A LHGD+EQR R+ + F N +VLVATDVA Sbjct: 252 QKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVA 311 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+ + ++ V N+ + +DPE +VHRIGRT RAG G AI+ P E + I + Sbjct: 312 ARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKTKVG 371 Query: 362 IKLNWQTPPANSSIATLEAEMATLCID 388 + P+ + + + + I+ Sbjct: 372 TTMTHAFVPSKNDLRAINLKSIATSIE 398 >UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A36 Length = 483 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 162/469 (34%), Positives = 247/469 (52%), Gaps = 22/469 (4%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + L+ LGY T +Q +PA+L G++V +++TG+GKTAAFG+ L ++I Sbjct: 15 LAPEIIHALDLLGYQEPTEIQREVIPAVLEGRNVAARSRTGTGKTAAFGIPLCEKIVWEE 74 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 QALVL P+RELA QV+ EL + R K+ + GG P Q +++ HI+V T Sbjct: 75 NLPQALVLEPSRELAVQVSNELFHIGR-RKRLKVPAVFGGFPIDKQMRTIKQKSHIVVGT 133 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++D +Q+ + L + LV+DEAD MLDMGF + + ++ P + LLFSAT E Sbjct: 134 PGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLLFSATLDE 193 Query: 190 AIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 + + D + I + + P I Q Y + K LL+R L L P SC++FC Sbjct: 194 KVRLLVDEYMADAVMIAPEPDAEEEPAISQVVYRADPEEKYDLLKRTLILENPESCMIFC 253 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 T++ + L +HG++EQR+R +T+ F G R L+ATDVAARG+D Sbjct: 254 GTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIATDVAARGIDFD 313 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQT 368 ++LVVN++ E +VHRIGRT R G +G A+S E + +++ + +L+ T Sbjct: 314 KIDLVVNYDFPGGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMGRELSVTT 373 Query: 369 PPANSSIAT--------------------LEAEMATLCIDGGKKAKMRPGDVLGALTGDI 408 P AT L A + L I GG+K+KMR D++G + Sbjct: 374 CPEPDEEATKAFWTRQRERRAPKAQKGAALNAGITRLSIGGGRKSKMRAVDIVGTICSID 433 Query: 409 GLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 G+ DIG I + + YV + ++LQ IKG+ +VR+ + Sbjct: 434 GIGAEDIGIIDIRESLTYVEILNGKGQAVLEKLQEKTIKGRLRKVRIAR 482 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 144/387 (37%), Positives = 208/387 (53%), Gaps = 11/387 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F N P + + + G++ TP+Q+ P L G+D+ A+TGSGKT ++ L L Sbjct: 253 FQEAN-FPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLV 311 Query: 64 QIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + A Q L+L PTRELA Q+ E + + T+ + GG P G Q Sbjct: 312 HVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSY-SRTRSTCIYGGAPKGPQIRD 370 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I++ATPGRL+D L+ G +L + LV+DEADRMLDMGF I ++ R Sbjct: 371 LRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDR 430 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLL 236 QTL +SATWP + +++ + ++P + I S D A I+Q S K P L +LL Sbjct: 431 QTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLL 490 Query: 237 -SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L S ++F TKKDC V L G ALS+HGD Q +RD L F +G + ++ Sbjct: 491 SDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIM 550 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 ATDVAARGLD+K ++ V+NF+ E ++HRIGRT RAG SG A +F A+ + Sbjct: 551 AATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRN 610 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEM 382 + +L+ + PA S+A + M Sbjct: 611 LVKILR-EAGQVVNPALESMAKSASSM 636 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 132/405 (32%), Positives = 206/405 (50%), Gaps = 15/405 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F T P + L G+ T +Q P L+G D+ A+TGSGKT F L Sbjct: 167 ITSFVTSG-FPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLP 225 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I A LVL PTREL +Q+ + + + + + GG P Q Sbjct: 226 AMIHIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFGS-IFKLRNTAIYGGVPKRPQ 284 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 + S+++ I +A PGRL+D L++G +L + LV+DEADRMLDMGF I ++ Sbjct: 285 QASIRNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIR 344 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRD-PLAIEIDSTDALP---PIEQQFYETSSKGKIPL 231 RQTLL+SATWP+ + ++ + ++ P+ I + S DAL I+Q K Sbjct: 345 PDRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAK 404 Query: 232 LQRLLSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFA 288 L+ L ++FC TK+ + L G AL +HGD +Q +R L F Sbjct: 405 LKMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFR 464 Query: 289 NGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE 348 G++ +++ATDVAARGLDIK + V+NF+ E ++HRIGRT RAG +G+++SF P+ Sbjct: 465 TGASPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPD 524 Query: 349 EAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + + A+ + +L+ + + PP ++ M + Sbjct: 525 KYRMASDLIKVLK-EAKQRVPPELFKLSPQNKRMHPRNTGFRRNN 568 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 136/373 (36%), Positives = 215/373 (57%), Gaps = 4/373 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L L + L ++ E G+ + +P+Q A+PA+L G+DV QA+TG+GKTAAF L ++ Sbjct: 23 SFNDLG-LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPII 81 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + + +ALV+ PTRELA Q++ E+ +L + TK + + GGQ Q + ++ Sbjct: 82 NNL-KNNHTIEALVITPTRELAMQISDEIFKLGKHTK-TKTVCVYGGQSVKKQCEFIKKN 139 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P +++ATPGRLLDHL+ + +V+DE+D MLDMGF D I+++ + P+ Q LL Sbjct: 140 PQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 199 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT PE I ++ ++ +P+ I I ++ I Q+FY + + + LL P Sbjct: 200 FSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAP 259 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VF TKK+ + L + +LHGD++QRDR +++ F A VLVATDVA Sbjct: 260 EKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVA 319 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 +RGLDI + V N+ L + E ++HRIGRT RAG G+AI+ P E + + + Sbjct: 320 SRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEID 379 Query: 362 IKLNWQTPPANSS 374 ++ P + Sbjct: 380 SEIELFEIPTINE 392 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 216/380 (56%), Gaps = 3/380 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGLGL 61 F N L L +G+ T +Q +P +L+ +DV A+TG+GKTAAFGL + Sbjct: 4 TFKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLPI 63 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +Q+++ L QA +LCPTREL Q+ + R ++FL KI++L GG Q SLQ+ Sbjct: 64 IQKVNFDLSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKSLQN 123 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HII+ TPGR++D +++ + L+ + L++DEAD ML+MGF + +D +++ P +RQ+L Sbjct: 124 KTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQSL 183 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSS-KGKIPLLQRLLSLH 239 LFSAT + + AI+ DP+ I + + ++ +Y K L+R++ ++ Sbjct: 184 LFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIVDIN 243 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TKK+ + + + L + G +A +L+GDL Q R+ + RF N + + LVATD Sbjct: 244 PGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVATD 303 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ ++ V+N+ L + ++++HR GRT RAGNSG+++ +E + Sbjct: 304 VAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKEFEKR 363 Query: 360 LQIKLNWQTPPANSSIATLE 379 + P I + Sbjct: 364 IGKSFERVMVPNGKEICEKQ 383 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 202/371 (54%), Gaps = 11/371 (2%) Query: 14 QLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ 73 L + G+ TP+QA + P L +D+ AKTGSGKT + + + Q Sbjct: 33 LLFQVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQ 92 Query: 74 ----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 LVL PTRELA Q+ E + R L GG P G Q L I+VAT Sbjct: 93 MGPTVLVLSPTRELATQIQDEAVKFGR-SSRLSCTCLYGGAPKGPQLRDLDRGADIVVAT 151 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGRL D L+ VSL ++ LV+DEADRMLDMGF I +++ PA RQTL+++ATWP+ Sbjct: 152 PGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPK 211 Query: 190 AIAAISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS-SCV 245 + I+ + +P+ + I + D A I Q K L+++L +P + Sbjct: 212 EVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKII 271 Query: 246 VFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305 +FC+TKK C + L A ++HGD Q +RD L +F G + VLVATDVAARGL Sbjct: 272 IFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGL 330 Query: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLN 365 DIK + +V+N++ E +VHRIGRT RAG +G+A +F A ++A+ A+ + +L+ N Sbjct: 331 DIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLE-GAN 389 Query: 366 WQTPPANSSIA 376 + PP +A Sbjct: 390 QRVPPEIRDMA 400 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 145/458 (31%), Positives = 241/458 (52%), Gaps = 20/458 (4%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGLL 62 F LN+ + + L+E G+ T +Q A+P +L + DV QA+TG+GKT AFG+ ++ Sbjct: 3 FRDLNI-SESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPII 61 Query: 63 QQID--------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q+I + +A++L PTRELA QV E+ + + ++ T+ GGQ Sbjct: 62 QKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKG-NKLRLCTVYGGQSIEK 120 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q + L++ I++ TPGR++DHL + T+ L+ ++ LV+DEAD ML++GF D +++++ Sbjct: 121 QINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKC 180 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQ 233 + LLFSAT P++I + + I + S EQ +YE K LL+ Sbjct: 181 KEDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLR 240 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 R++ +VFC TK D + LN+ S+ +LHGD+ Q+ R+ L RF + Sbjct: 241 RIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKID 300 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +++ATDVAARG+DI L V+N+++ +PE +VHRIGRT RAGN G AI+F P E +R Sbjct: 301 IMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRF 360 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I + + + P + I E+ I G K ++ + + L+ Sbjct: 361 KYIMKISKSDAKKEKIPDVTEI----VELTKTNIIGKLKQLIQTENSEDS----EDLENY 412 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTC 451 + + + + +A + + K QL ++ K+ Sbjct: 413 EFENLEIVDELIELADSKVIIDKLISQLFKEELNRKSY 450 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 192/371 (51%), Gaps = 12/371 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F P + L + + T +QA P L+G+D+ A+TGSGKT A+ L Sbjct: 94 VTNFHQAQ-FPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLP 152 Query: 61 LLQQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+ + + LVL PTRELA QV + K + GG P G Q Sbjct: 153 AIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGK-SSRIKSTCVYGGAPKGPQ 211 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L+ I +ATPGRL+D L+ G +L LV+DEADRMLDMGF I ++ Sbjct: 212 IRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 271 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQTL++SATWP+ + ++ +D + I I + + A I Q K L Sbjct: 272 PDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLI 331 Query: 234 RLLSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 +L+ + + ++F TKK C + + G A+ +HGD Q +RD L F +G Sbjct: 332 QLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSG 391 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 A +L+ATDVA+RGLD++ ++ V+N++ E +VHRIGRTAR+ N G A +F P Sbjct: 392 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL 451 Query: 351 QRANIISDMLQ 361 ++A + +L+ Sbjct: 452 RQARDLVRVLE 462 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 136/394 (34%), Positives = 214/394 (54%), Gaps = 5/394 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F L L L++ G+ + +Q +P +L + + QA+TG+GKTAAFG+ Sbjct: 1 MQRFEDFG-LSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ IDA +AL+L PTRELA+QV+ E+ L + + K+L + GG Q L Sbjct: 60 PILETIDAD-KTVRALILAPTRELANQVSDEIYSL-KGEKDIKVLAVYGGASIENQIKRL 117 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR++D + K + ++ L+ V+DEAD ML+MGF + I++++ ++ Sbjct: 118 KAGVDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKK 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI-EQQFYETSSKGKIPLLQRLLSL 238 L FSAT P+AI AI+ R + ++++ + + EQ +YE + K L R+L Sbjct: 178 MLFFSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDY 237 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 Q +VFC TK + V + L A +HGD+ Q R + L F +LVAT Sbjct: 238 EQNFYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVAT 297 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ +L V+N+ + + E +VHRIGRT RAG+ G+AI+F P EA + I Sbjct: 298 DVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIKR 357 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 + + + + P I + E +D K Sbjct: 358 VTKTDIKREDIPNVEEILEAKKEALVAYVDEIIK 391 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 215/368 (58%), Gaps = 3/368 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F++ P + + +L Y T +Q A+P I+ GKD+ QA+TG+GKTAAF L +L Sbjct: 4 SFASFG-FRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPIL 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +D QAL+L PTREL+ Q+A E+ +L + L N +L+L GG Q L+ Sbjct: 63 NALDEGKRDIQALILTPTRELSIQIAKEVEKLGKHL-NVNVLSLHGGTDIDKQLSKLKET 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+V TPGR+LDH+++G++ ++TLV+DEAD+M++MGF + ++ VI P+ RQ LL Sbjct: 122 VQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ + ++ R + P I+I+ + IEQ +Y + K L +L QP Sbjct: 182 FSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQEQP 241 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VF NT+ Q + L E G SA +L+GDL Q R+Q + +F + L+ATD+A Sbjct: 242 FLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIA 301 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + V+N++L D + ++HR+GRT RAG G AIS +P + + + Sbjct: 302 ARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFAKATK 361 Query: 362 IKLNWQTP 369 + + Sbjct: 362 ASIEERIL 369 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 152/412 (36%), Positives = 223/412 (54%), Gaps = 7/412 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L + + L+ L +T TPVQ ++P +L GK++ A+TG+GKTAAFGL ++ Sbjct: 4 NFADLGI-EQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPII 62 Query: 63 QQIDASL--FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 Q + QALVL PTRELA QV L + + +I+ + GG G+Q+ L+ Sbjct: 63 QTVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTE-LRIVCVYGGTSIGVQKRKLE 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I++ATPGRLLDHL G V++ + LV+DEADRMLDMGF + + R PA +Q Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT+ + I I+ ++ P+ +E+ + ++Q Y K K LL L+ Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSR 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +VF TK+ + L G A+S++GD Q R + L F G R L+ATD Sbjct: 242 NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATD 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI+ LE VVNF++ + E +VHRIGRT RAG SGLA+S + +E + I ++ Sbjct: 302 VAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIENL 361 Query: 360 LQIKLNWQTPPANSS--IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 L +L + I +E E + ++ R A+ + G Sbjct: 362 LDQRLPQEWLAGFEPTLIEEVEPEKNGSGRRRSRSSEKRKLKAKLAIHKNRG 413 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 148/382 (38%), Positives = 210/382 (54%), Gaps = 11/382 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 FS+L L ++ L GY TP+QAAA+P LAG D+ A+TG+GKTAAF L Sbjct: 3 NPFSSLG-LGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61 Query: 62 LQQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFG 113 L+++ ++ + LVL PTRELADQ+ ++ + LP + L GG Sbjct: 62 LERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMD 120 Query: 114 MQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF 173 Q L+ I+VAT GRLLDH+++ + L+ + +V+DEADRMLDMGF D I +++ Sbjct: 121 KQTADLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQM 180 Query: 174 APASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLL 232 P RQTLLFSAT+ I ++ P +E+ + + +EQ + K LL Sbjct: 181 LPRQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLL 240 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 +RL+ + +VFC TK+ V L SA ++HGD Q+ R +TL F +G+ Sbjct: 241 ERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNL 300 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 RVLVATD+AARGLDI L V+N+E+ PE +VHRIGRT RAG G+AIS E + Sbjct: 301 RVLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKM 360 Query: 353 ANIISDMLQIKLNWQTPPANSS 374 I ++ KL + Sbjct: 361 FESIKELTGNKLLIERIEGFEP 382 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 145/413 (35%), Positives = 211/413 (51%), Gaps = 18/413 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F L + P L L+ GY TP+QA A+P +L G+D+ A+TG+GKTAAF L Sbjct: 3 ITTFDQLGLSQP-VLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP 61 Query: 61 LLQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + ++ + QT + LVL PTRELA Q+A + + K+ ++ GG G Sbjct: 62 SIDRLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGA-MAGLKVHSIVGGTSVGKD 120 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 R+ L I+VATPGRLLD + + L+A+ LV+DEAD+MLD+GF A+ + P Sbjct: 121 RNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVP 180 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQR 234 A RQTL FSAT P+ I + G+ R+P+ + + I+Q + K L++ Sbjct: 181 AERQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEM 240 Query: 235 LLSLH-----QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFAN 289 +L + +VF TK V L + G + ++HG+ Q R + L F Sbjct: 241 ILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKR 300 Query: 290 GSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 +L+ATDVAARG+DI + V+N+EL PE +VHRIGRTARAG G+AI+FCA +E Sbjct: 301 AKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDE 360 Query: 350 AQRANIISDMLQIKLNWQTPPAN-----SSIATLEAEMATLCIDGGKKAKMRP 397 I + + P N + + E K K R Sbjct: 361 RAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARK 413 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 158/427 (37%), Positives = 235/427 (55%), Gaps = 14/427 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F L V P L G +T P+Q ALP L G+D+ QA+TG+GKT AFG+ Sbjct: 38 LTTFRDLGVT-PEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVA 96 Query: 61 LLQQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 +LQ++ + + + LV+ PTRELA QV +L A ++ILT+ GG+ + Q + Sbjct: 97 MLQRVGKPRKNRKKPRGLVVVPTRELAVQVTEDLVT-AAGKLGSRILTVYGGRAYEPQVE 155 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 +L+ +IV TPGRLLD +++ + L ++ LV+DEADRMLD+GF I+ +I+ P Sbjct: 156 ALKQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEK 215 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA----LPPIEQQFYETSSKGKIPLLQ 233 RQT+LFSAT P I A+S R P + ++ DA P Q + KI ++ Sbjct: 216 RQTMLFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVG 275 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 RLL ++FC TK+ C V + L E G +A ++HGDL Q R+Q L F NG Sbjct: 276 RLLQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKID 335 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATDVAARG+D+ + VVN++ D + +VHRIGRT RAG +G+A++F E+ R Sbjct: 336 VLVATDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRW 395 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA-LTGDIGLDG 412 +I++ L + + +T + L I G K + + A L + D Sbjct: 396 KVINNALSLDFAEPV----ETYSTSPHVFSDLGIPEGTKGVLPHANRSRAGLAAEEVEDL 451 Query: 413 ADIGKIA 419 + G++ Sbjct: 452 GETGRVR 458 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F N P + + + T +QA P L+G D+ A+TGSGKT ++ L + Sbjct: 95 NFYEAN-FPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153 Query: 63 QQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I+ F + LVL PTRELA QV R K + GG P G Q Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIR 212 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ I +ATPGRL+D L+ G +L LV+DEADRMLDMGF I ++ Sbjct: 213 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 272 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQTL++SATWP+ + ++ +D + I I + + A I Q K L RL Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332 Query: 236 LSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 + + + +VF TK+ C + + G A+ +HGD Q++RD L F +G A Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 +L+ATDVA+RGLD++ ++ V+N++ E ++HRIGRTAR+ +G A +F P ++ Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452 Query: 353 ANIISDMLQ 361 + + +L+ Sbjct: 453 VSDLISVLR 461 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 147/447 (32%), Positives = 212/447 (47%), Gaps = 34/447 (7%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M +F L + L N+ + Y TPVQ ++P +L G+D+ A+TGSGKTAAF Sbjct: 199 MQSFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFP 258 Query: 61 LLQQI--DASLFQTQ-------------ALVLCPTRELADQVAGELRRLARFLPNTKILT 105 ++ ++ D Q ALVL PTRELA Q E R+ F + Sbjct: 259 IVMKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFC-FGTGIRTNV 317 Query: 106 LCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSD 165 L GG Q L IIVATPGRL D + +G V+L + L++DEADRMLDMGF+ Sbjct: 318 LYGGSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAP 377 Query: 166 AIDDVI--RFAPAS---RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQ 219 I +++ P S RQT++FSAT+P I ++ + + + + A I Q+ Sbjct: 378 QIREIVEDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQR 437 Query: 220 FYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRD 279 K LL +LL VVF K+ + D L + A+S+HGD Q++ Sbjct: 438 VVYAEEDHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQE 497 Query: 280 RDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSG 339 R+ L F +G +LVATDVAARGLDI ++ V+N ++ + + +VHRIGRT RAGN+G Sbjct: 498 REHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTG 557 Query: 340 LAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCID--GGKKAKMRP 397 LA SF + L+ + +M C G + Sbjct: 558 LATSFVNESNKPILRDLLAALE--------ESGQDAPEWFQDMVKSCTASFGRYGNRFNK 609 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAH 424 G V + G+ GL G + + Sbjct: 610 GGVSSSQRGNRGLHS--FGSVDIRSNQ 634 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 143/393 (36%), Positives = 207/393 (52%), Gaps = 27/393 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F + + + N+ Y TPVQ A+P I+ +D+ A+TGSGKTAAF L Sbjct: 220 IESFHDV-TMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLP 278 Query: 61 LLQQIDASLFQ------------------TQALVLCPTRELADQVAGELRRLARFLPNTK 102 +L QI A +LVL PTRELA Q+ E R+ A + + Sbjct: 279 ILSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFA-YRSRVR 337 Query: 103 ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMG 162 + GG G Q L+ H++VATPGRL+D +++G + LD LV+DEADRMLDMG Sbjct: 338 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG 397 Query: 163 FSDAIDDVIRF--APAS--RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIE 217 F I ++ P RQT++FSAT+P+ I ++ + + + + + I Sbjct: 398 FEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENIT 457 Query: 218 QQFYETSSKGKIPLLQRLLSLHQPSS-CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE 276 Q+ K L LL+ S +VF TKK A+ D L G + S+HGD Sbjct: 458 QKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRS 517 Query: 277 QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAG 336 QRDR++ L +F +G + +LVAT VAARGLDI +++ V+NF+L D E +VHRIGRT R G Sbjct: 518 QRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 577 Query: 337 NSGLAISFCAPEEAQRANIISDMLQIKLNWQTP 369 N GLA SF + + D+L ++ + P Sbjct: 578 NLGLATSFFNEKNINITKDLLDLL-VEAKQEVP 609 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 157/453 (34%), Positives = 240/453 (52%), Gaps = 15/453 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGLGLL 62 F L L + LG+ TP+Q A+P ++ G +D A+TG+GKT A+GL L+ Sbjct: 3 FRILG-LSDELARAVESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPLI 61 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q ID S+ + QA+V+CPTREL Q+AG+LR A+++ + ++ + GG Q +++ Sbjct: 62 QSIDLSIPRPQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGG 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 II ATPGRLLD + + + + +V+DEAD ML+MGF + I+ ++ P R+T L Sbjct: 122 AQIIAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ +AAI+ + Q +P+ + + A P I Y +K + L+R+L Sbjct: 182 FSATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPD 241 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFC T+KD Q + +AL G +A +LHGDL Q RDQ + RF + +VL ATDVA Sbjct: 242 MFGLVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVA 301 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ + V+++ L DPE + HR GRTARAG G +I+ P E R + + Sbjct: 302 ARGLDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGK 361 Query: 362 IKLNWQTPPANSSI-----ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGAD-I 415 + P I A L ++A++ + A+ P D+L A GL + I Sbjct: 362 FSFQLDSLPQGRDICQKQVAGLAEKLASVSVRENDIAEYMP-DILEAF---EGLSREEII 417 Query: 416 GKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 K + + + K+KG Sbjct: 418 QKAVSTEFNRLLDYYRNAGD--INAKPREKVKG 448 Score = 52.2 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 347 PEEAQRANIISDMLQIKL----NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLG 402 P E + + + K+ P + + + I+ G+ K+ G ++ Sbjct: 442 PREKVKGQAGAKFTREKIVGKGRHGKGPKKDRLKGRKTQR--FFINRGRLDKVNEGAIVR 499 Query: 403 ALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 + + G+ IG+I ++ + V +++A + + L+ + GK +VR Sbjct: 500 LVCENSGIKSRSIGQIDLNREFSFFEVEKSLAPRVLRGLENATLDGKALQVRAA 553 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 136/454 (29%), Positives = 233/454 (51%), Gaps = 19/454 (4%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +++ L E ++ T VQ A+P + G+D+ VQ+KTGSGKT AF + + Sbjct: 5 KFEDMSI-SKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + +++ L +A+VL PTRELA QV R + + + + + GG P Q L+ Sbjct: 64 ENLNSGL---EAIVLVPTRELAQQVERVARSIGKA-HGKRTVVIYGGAPMERQIAGLK-G 118 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +++ TPGR++D +++G ++L+ + V+DEADRMLDMGF D I +++ P +Q +L Sbjct: 119 ASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMML 178 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I +++ R ++P I + + + Q + E KI L LL + Sbjct: 179 FSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERG 238 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++FCNT++ + + + L + G A +LHGD+ Q R +T+ F G +LV+TDVA Sbjct: 239 KY-LIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVA 297 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ + VVN+++ P+ +VHRIGRT R G AI+F E+ + I D + Sbjct: 298 ARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIEDFIG 357 Query: 362 IKLNWQTPPANSSIATL--EAEMATLC----IDGGKKAKMRPGDVLGALTGDIGLDGADI 415 ++ I E++ + + K ++ D++ + ++G+ I Sbjct: 358 KRIPKMEIKNVGKIKERIDYKEISDIFGMVKFNFELKNELSEWDLIK-IANNVGIGENSI 416 Query: 416 GKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGK 449 G I + + V A K + ++ K Sbjct: 417 GNIILEGKRGSMKVHYRSAPKV----KKMRVFKK 446 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 146/412 (35%), Positives = 211/412 (51%), Gaps = 24/412 (5%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65 L L + GY +TP+Q A+P I G D+ A+TG+GKTAAF L +L I Sbjct: 8 LSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKAN 67 Query: 66 ------------------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLC 107 AS +AL+L PTRELA+QVA +++ +++LP K + Sbjct: 68 HAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLP-IKSGVVY 126 Query: 108 GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI 167 GG Q L+ ++VATPGRLL+HL V L + LV+DEADRMLDMGF I Sbjct: 127 GGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDI 186 Query: 168 DDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSK 226 + ++ QTL+FSAT+ + + +++ ++ + P I + + I+Q Y + + Sbjct: 187 EKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEE 246 Query: 227 GKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR 286 K LL L+ ++ +VF TK+ + L G A HGD Q R++ L + Sbjct: 247 RKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQ 306 Query: 287 FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 F+ G RVLVATDVAARGLDI L VVNF L + PE +VHR+GRT RAG SG AIS + Sbjct: 307 FSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVS 366 Query: 347 PEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 P++ + I +++ K P +E + K + R Sbjct: 367 PKDERFLENIEQLIERKFERIVAPGYEFNRLEASEYQEATVKRDSKNRYRAA 418 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 153/400 (38%), Positives = 227/400 (56%), Gaps = 15/400 (3%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F L + P L L L Y T TP+QAA +P +L KD+ A+TG+GKTAAF L L Sbjct: 4 TTFRELGLSAP-ILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPL 62 Query: 62 LQQID-----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 +QQ+ + +AL+L PTRELA Q+ +R AR L + + GG + Q Sbjct: 63 IQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGL-HLSTAVIFGGVGYASQF 121 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L I+VATPGRL+DHL++ TVSLD + TL++DEAD MLDMGF+ A+ ++ P Sbjct: 122 KELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPR 181 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYET-SSKGKIPLLQR 234 R T +FSAT P+ I ++ + + P + + + +EQ S K L Sbjct: 182 KRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLE 241 Query: 235 LLSLHQ-PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 LL + P ++F T+ + L+ A ++HGD Q R++ L F +G Sbjct: 242 LLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTP 301 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATD+AARG+D+K + LV+N++L +PEV+VHRIGRTARAG +G AI+ C+PEE ++A Sbjct: 302 VLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKA 361 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + +L + P ++S A++ AE+ + K++ Sbjct: 362 RNVHKLLG-----RLLPVHASSASVPAELRAVPEARRKRS 396 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 146/404 (36%), Positives = 221/404 (54%), Gaps = 9/404 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L P L LN+LG+ + TP+Q ++P ++ G+D+ A+TG+GKT F L +L Sbjct: 2 TFEALG-LSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60 Query: 63 QQIDASLF---QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +I + +ALVL PTRELA Q+ + A++L +T + L GG F Q +L Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYL-HTNAVLLVGGVDFIRQERNL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+VATPGRLLDH+++ ++L + +++DEADRMLDMGF I+ ++R P RQ Sbjct: 120 KRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSS-KGKIPLLQRLLS 237 +LLFSAT P I ++ Q D + + ++ I Q++ S K+ LL+++L Sbjct: 180 SLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLD 239 Query: 238 L--HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + ++F TK+ + + ALN+ G + +LHGD Q R++ L RF G +VL Sbjct: 240 EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI + V+N++L E +VHRIGRT RAG +G A+SF P + Sbjct: 300 VATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRS 359 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 I M + S +L G + + G+ Sbjct: 360 IETMAGKPIPHSPHSIPLSEQSLRKTFTRRPSFGRPQDRTPRGE 403 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 142/395 (35%), Positives = 205/395 (51%), Gaps = 31/395 (7%) Query: 1 MTAFS--TLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFG 58 + +FS + + N+ Y TPVQ A+P I +D+ A+TGSGKTAAF Sbjct: 179 IESFSDVEMG---EIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFL 235 Query: 59 LGLLQQI--DASLFQTQA----------------LVLCPTRELADQVAGELRRLARFLPN 100 L +L QI D +A LVL PTRELA Q+ E R+ + + Sbjct: 236 LPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSR 294 Query: 101 TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD 160 + + GG G Q L+ H++VATPGRL+D +++G + LD LV+DEADRMLD Sbjct: 295 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354 Query: 161 MGFSDAIDDVIRF--APAS--RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-P 215 MGF I ++ P R T++FSAT+P+ I ++ + + + + + Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 414 Query: 216 IEQQFYETSSKGKIPLLQRLLSLHQPSS-CVVFCNTKKDCQAVCDALNEVGQSALSLHGD 274 I Q+ K L LL+ S +VF TKK ++ D L G + S+HGD Sbjct: 415 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474 Query: 275 LEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR 334 QRDR++ L +F +G + +LVAT VAARGLDI +++ V+NF+L D E +VHRIGRT R Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534 Query: 335 AGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTP 369 GN GLA SF + D+L ++ + P Sbjct: 535 VGNLGLATSFFNERNINITKDLLDLL-VEAKQEVP 568 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 143/385 (37%), Positives = 198/385 (51%), Gaps = 19/385 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L + P L L + GY T TP+QA ++P IL G DV A+TG+GKTAAF L Sbjct: 1 MNKFEDLGLTGP-LLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALP 59 Query: 61 LLQQI---DASLFQTQ-------------ALVLCPTRELADQVAGELRRLARFLPNTKIL 104 +LQ + D + LVL PTREL+ Q+ R + + Sbjct: 60 ILQIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGK-KTRLRST 118 Query: 105 TLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFS 164 + GG Q LQ +VATPGRLLD + +G + L + LV+DEAD MLDMGF Sbjct: 119 VIFGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFL 178 Query: 165 DAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYET 223 + +++F P RQ LLFSAT P I ++ + DP+ I+I + IEQ Sbjct: 179 PDVKRILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFV 238 Query: 224 SSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQT 283 + K LL + S +VF TK AV L + G A ++HG+ Q +R +T Sbjct: 239 AQADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRT 298 Query: 284 LVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAIS 343 L +F N VLVATDVAARG+DI ++ V+N++ PE +VHRIGRT RAG G + Sbjct: 299 LNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 358 Query: 344 FCAPEEAQRANIISDMLQIKLNWQT 368 FC E + I +++++ T Sbjct: 359 FCGGHETKFFIAIEREIKLQIPVAT 383 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 527 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 133/369 (36%), Positives = 196/369 (53%), Gaps = 12/369 (3%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 P + + G+ TP+Q+ A P L G+D+ AKTGSGKT AF L + I+A Sbjct: 391 FPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQP 450 Query: 70 -----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 LVL PTRELA Q+ E + + GG Q +L+ Sbjct: 451 VLREDDGPIVLVLAPTRELALQIQEETNKFG-GTSQISNTCVYGGASKHTQVAALKKGVE 509 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 I++ATPGRL+D L+ G +L + LV+DEADRMLDMGF I +I RQTL+FS Sbjct: 510 IVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFS 569 Query: 185 ATWPEAIAAISGRVQRDPLAIEIDSTDALPP--IEQQFYETSS-KGKIPLLQRLLSLHQP 241 ATWP+ + A++ D + + I ST+ + Q + K +L L S+ + Sbjct: 570 ATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRD 629 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VF T+K + L G ++ +HG+ Q +RD L +F NG +++ATDVA Sbjct: 630 EKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVA 689 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML- 360 +RGLDIK ++ VVN++ EV++HRIGRTARAG SG++ S + A+ AN + +L Sbjct: 690 SRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLT 749 Query: 361 --QIKLNWQ 367 + K+ + Sbjct: 750 EAKQKIPIE 758 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 527 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 151/367 (41%), Positives = 218/367 (59%), Gaps = 2/367 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L + P L G T VQ A+P +L G+D+ QA+TG+GKT AF L +L Sbjct: 23 NFKHLGISDPLIHK-LAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPIL 81 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++ID S TQAL++ PTRELA Q+ E+++L +P+ +L + GGQ Q LQ Sbjct: 82 EKIDPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQ 141 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+VATPGRLLDHL++GTV LD ++ LV+DEAD+ML +GF + ++ +I PASRQT+L Sbjct: 142 TQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQTML 201 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I +S + ++P +I I+ T IEQ T+ + K L + +P Sbjct: 202 FSATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRIREDRP 261 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++FC T + + DAL S LHGDL Q R++ + +F N + L+ATDVA Sbjct: 262 FLAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVA 321 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + V N+++ D E +VHRIGRT RAG GLA++F A ++ I L Sbjct: 322 ARGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELN 381 Query: 362 IKLNWQT 368 I+L + Sbjct: 382 IRLPKEE 388 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 147/412 (35%), Positives = 206/412 (50%), Gaps = 9/412 (2%) Query: 5 STLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ 64 + L ++ P Q L GY TP+QA A+P +L G D+ A+TG+GKTAAF + +LQ Sbjct: 7 NELKIINPIQ-KALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQS 65 Query: 65 ID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + Q +ALVL PTRELA Q+A LP + L + GG Q Sbjct: 66 LAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLP-LRTLVIFGGVGQAPQTRK 124 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I+VATPGRLLD + +G + L + V+DE D+MLDMG + +I + P R Sbjct: 125 LEKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRER 184 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLS 237 Q +LFSAT P I ++ + + P+ I + L IEQ+ Y K LL L Sbjct: 185 QNMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLK 244 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 ++ S +VF TK + LN+ G +A+++HG+ Q +R+Q L F R+LVA Sbjct: 245 NNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVA 304 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLDI+ L V+N+ L PE ++HRIGRT RAG G AI+FC EE I Sbjct: 305 TDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQ 364 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 + L + T+ A +P A G Sbjct: 365 KRIGKTLPEVKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQG 416 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 150/454 (33%), Positives = 237/454 (52%), Gaps = 12/454 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F L L L L+ +GY T +P+Q + +L KD+ QA+TG+GKTAAF L L Sbjct: 12 SKFERLG-LSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPL 70 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +I+ ++ Q L+L PTRELA QV+ ++ AR + +L + GGQ + +Q L+ Sbjct: 71 LDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKR 130 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H IV TPGR++DH++K T+ LD L + V+DEAD ML MGF D I +++ P RQ Sbjct: 131 GVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIA 190 Query: 182 LFSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSLH 239 LFSAT P I I+ + P I T+ I Q++ K+ L R+L + Sbjct: 191 LFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRILEVT 250 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + ++F TK + + L+ G SA +++GD++Q R++ + + G +L+ATD Sbjct: 251 VFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILIATD 310 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARGLD++ + VVN+++ D E +VHRIGRT RAG G AI F + E + N I + Sbjct: 311 IAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTIEHV 370 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + K+ P+ I E T + + + ++ L G+ + I Sbjct: 371 TRQKITPIELPSVKIINAKRIE--TFKQNIIQTINNQNLEIFKKLVGEFQQENPKIEISQ 428 Query: 420 VHPAHVYVA-------VRQAVAHKAWKQLQGGKI 446 + A Y+A + + ++ + Q KI Sbjct: 429 ISSALAYIAQGNEPLLLSEKESNLGFNQTPKEKI 462 Score = 42.2 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 387 IDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKI 446 I+ G ++ ++LGA+ +D IG I + + + ++++ + LQ + Sbjct: 484 IEVGNNNNVKTSNILGAIANKTNMDSEYIGSIQIFDHFSTIDLPAKISNEVFGVLQKTIV 543 Query: 447 KGKTCRV 453 GK + Sbjct: 544 CGKHLNI 550 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 154/382 (40%), Positives = 219/382 (57%), Gaps = 9/382 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L +L P L + ELG+ T TP+Q ALPA L G+DV A TG+GKTAAF L L Sbjct: 9 SFSDLGLL-PHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67 Query: 63 QQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q+I + + LVL PTRELA QV +R L++F + T+ GG P+ Q + Sbjct: 68 QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKF-GRIQTGTILGGMPYRQQLE 126 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ +IVATPGRL+DH+++G + L + LV+DEADRMLDMGF +A++ + PA Sbjct: 127 MLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAE 186 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSS-KGKIPLLQRL 235 RQTLLF+AT ++ + RDP+ I++ + +EQ++ + K LL+ L Sbjct: 187 RQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETL 246 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L + +VF TK D + D L+E G A+ LHGD++QRDR++ + +G V+ Sbjct: 247 LGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVI 306 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARG+DI L V+NF+L E +VHRIGRT RAG SG++ S E ++ Sbjct: 307 VATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRA 366 Query: 356 ISDMLQIKLNWQTPPANSSIAT 377 I + P + Sbjct: 367 IEAYTNKAADMHVLPGLEPMPE 388 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 142/428 (33%), Positives = 218/428 (50%), Gaps = 15/428 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ LNV P L+ + + G+ TP+Q+ P L+G+DV A+TGSGKTA+F L + Sbjct: 93 SFNELNV-PDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAV 151 Query: 63 QQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I A + L+L PTRELA QV + A + + + GG G Q Sbjct: 152 IHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFA-DAASLRAMCFYGGSAKGTQLR 210 Query: 118 SLQHAPHIIVATPGRLLDHLQ-KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +Q I +ATPGRL+D ++ + + L + LV+DEADRMLDMGF I +I Sbjct: 211 EMQKGGEICIATPGRLIDFIRVQRNL-LSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRP 269 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQR 234 RQTL++SATWP + ++ D + + I S A P I Q K L Sbjct: 270 DRQTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIE 329 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 LL+ + +VF TK+ + ++L G ++HG +QRDR+ TL F +G + Sbjct: 330 LLTSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNI 389 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATDVA+RGLDI ++E VVNF+ E ++HRIGRTAR+ +G A +F + ++A Sbjct: 390 LVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQAR 449 Query: 355 IISDML---QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 + D+L +++ + + ++ + +TL + + PG + G Sbjct: 450 DLIDILDEANQEISAE-LVQLAGMSNYLRKSSTLKKNPPAFQQKPPGRITGFGNSSSSFP 508 Query: 412 GADIGKIA 419 DI + Sbjct: 509 TQDIRIVN 516 >UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH79_RHOM4 Length = 505 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 223/428 (52%), Gaps = 6/428 (1%) Query: 6 TLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI 65 +L LP +G+ + PVQ LP +L G+DV VQ++TGSGKT AF L L +++ Sbjct: 41 SLAELPERMQQAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERL 100 Query: 66 DASLFQTQALVLCPTRELADQVAGELRRLARFLPN---TKILTLCGGQPFGMQRDSLQHA 122 D S Q QAL+L PTRELA Q++ ++ + + + + GG +G Q +L+ Sbjct: 101 DPSRGQVQALILTPTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKALEQG 160 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +++ TPGR+LD +++G + L AL LV DEAD ML MGF A+ + R+ P R T + Sbjct: 161 AQVVIGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERNTAM 220 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P + A++ +DP + + + A IE +++ K L +L+ L P Sbjct: 221 FSATMPPRVQALAREFLKDPAFVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELENP 280 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S ++F NTK+D + + L G +A ++ GDL Q+ R++ + R G R+LVATDVA Sbjct: 281 ESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVA 340 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+DI L V +++ DPE +VHR GRT R G G I P E R I+ Sbjct: 341 ARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYD 400 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR--PGDVLGALTGDIGLDGADIGKIA 419 I L T P ++A AE A ++ + + + L + +A Sbjct: 401 IPLEKGTLPTPETVAERVAERAVALLEDRYRETTSLDRERIARFVPLVEQLAQEEPELLA 460 Query: 420 VHPAHVYV 427 + +YV Sbjct: 461 MLVDALYV 468 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 143/377 (37%), Positives = 201/377 (53%), Gaps = 6/377 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F+ L L A L + LGY TPVQ A+P +L G+D+ A TG+GKTAAF L Sbjct: 1 MQNFADLG-LSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLP 59 Query: 61 LLQQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 +L + + LV+ PTRELA Q++ ++ R + T+ GG P+G Q + Sbjct: 60 ILSTLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITR-KTGHYVTTVFGGTPYGPQIN 118 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 ++ +++ATPGRL D + KG V L + +LV+DEADRMLDMGF A+ ++ PA Sbjct: 119 EIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPAD 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLL 236 RQTLLFSAT +I G + DP +EI + +EQ ++ K LLQ LL Sbjct: 179 RQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALL 238 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VF TK + +AL + G A S+H D Q R + L F G +LV Sbjct: 239 EEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILV 298 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDV ARG+D+ ++ V+NF+L PE +VHRIGRT RAG G A+SF E + + I Sbjct: 299 ATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDI 358 Query: 357 SDMLQIKLNWQTPPANS 373 ++ + Sbjct: 359 EKLIGKNVPLMELETYE 375 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 154/405 (38%), Positives = 216/405 (53%), Gaps = 8/405 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F P L + GY+T TP+Q ALP L G+D+ A+TGSGKTA F L Sbjct: 25 IENFEAFGFAEP-LSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLP 83 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 LLQ+I + + Q ALVL PTRELA Q+ E+ LAR + + + GG G Q Sbjct: 84 LLQKIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNM-RIRRAVVLGGVSKGPQ 142 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 ++L+ H++VATPGRLLD + T L + TLV+DEADRM DMGF I ++ P Sbjct: 143 INALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLP 202 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQR 234 +R+T LFSAT P I + + ++P +++ S + I+Q+ + K L Sbjct: 203 EARRTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHT 262 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +L+ +VF TK+ V + L G SA + HG+ Q R + L F G RV Sbjct: 263 ILADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRV 322 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ ++ VVNF++ DPE +VHR+GRTAR GNSG+AIS C P E Q Sbjct: 323 LVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEIT 382 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 I M++ KL ++ E G ++ R Sbjct: 383 AIERMMKQKLEVIADVGGEALPMPERRQHHRAETGPRRDGDRQHH 427 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 135/375 (36%), Positives = 207/375 (55%), Gaps = 17/375 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F + +TNL + + TPVQ ++P +++G+D+ A+TGSGKTAAF L Sbjct: 351 IKSFEEAGIY-DGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLP 409 Query: 61 LLQQIDAS---------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQP 111 +L + + + + QALV+ PTRELA Q+ + R+ + + + L GG Sbjct: 410 VLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTM-LRPVVLYGGTS 468 Query: 112 FGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVI 171 G Q +++ HI+V TPGRL+D + KG +SL L L++DEADRMLDMGF I ++ Sbjct: 469 VGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIV 528 Query: 172 RFA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSK 226 RQTL+FSAT+PE I ++G D L + + A + Q F++ + Sbjct: 529 HELGTPEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQ 588 Query: 227 GKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR 286 K L +LS +VF K++ + L+E G S+HGD QR+R++ L Sbjct: 589 QKRQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRD 648 Query: 287 FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 F G A +L+AT VAARGLDI +++ V+N++L + +VHRIGRT R GN G A SF + Sbjct: 649 FKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFS 708 Query: 347 PE-EAQRANIISDML 360 + + A + +L Sbjct: 709 EDGDGSLAKPLMRIL 723 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 525 bits (1355), Expect = e-148, Method: Composition-based stats. Identities = 135/368 (36%), Positives = 209/368 (56%), Gaps = 4/368 (1%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--A 67 L L Y+ +P+QAA +P L G+DV QA+TG+GKTAAFG+ ++++++ Sbjct: 11 LSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIERLEHGP 70 Query: 68 SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIV 127 + QAL+L PTRELA QV E+ +L ++ + GG+P Q + L+ APHI+V Sbjct: 71 NSRNPQALILTPTRELAVQVRDEIAKLT-HGQRINVVAVYGGKPLRSQMEKLKRAPHIVV 129 Query: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187 TPGR++D + + + L+ L T+V+DEADRMLD+GF I+ ++R P RQTLL SAT Sbjct: 130 GTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSATV 189 Query: 188 PEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVV 246 P I ++ R R+P ++ T+ + IEQ+++ K +L LL QP +V Sbjct: 190 PPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKREQPQKAIV 249 Query: 247 FCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLD 306 FC TK+ + + L++ + +HGD++Q R++ L F RVLVATDV RG+D Sbjct: 250 FCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGID 309 Query: 307 IKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 366 I + ++N+++ + +VHR+GRT R G G+A +F PEE I + L Sbjct: 310 ISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEVRIDKLLIR 369 Query: 367 QTPPANSS 374 P + Sbjct: 370 DELPGFAP 377 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 525 bits (1355), Expect = e-148, Method: Composition-based stats. Identities = 150/429 (34%), Positives = 223/429 (51%), Gaps = 8/429 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F+ L L + L LGY TP+Q A+P ++ G D+ +A TG+GKTAAF L + Sbjct: 21 SGFAKLG-LDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPI 79 Query: 62 LQQIDAS--LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L + S + +L+L PTRELA QVA + + + L ++L + GG P Q +L Sbjct: 80 LHGLARSTARTKPTSLILVPTRELAMQVAESVAKYGQPL-GVRVLPIYGGAPMDQQIRAL 138 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 ++VATPGR LDH+++ T+ LDA+ +V+DEAD MLDMGF++ I+ ++ P RQ Sbjct: 139 DRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQ 198 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEID----STDALPPIEQQFYETSSKGKIPLLQRL 235 T LFSAT I AI+ + ++ I + LP + Q Y + K+ L R+ Sbjct: 199 TALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRV 258 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L P++ ++FC T+ + + +AL G +LHG + Q RD+ + F G A +L Sbjct: 259 LDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLL 318 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLD++ L VVNF L E +VHRIGR RAG G+AI+ P E Sbjct: 319 VATDVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRA 378 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 I ++ + P +++ E + I A + LD D+ Sbjct: 379 IERHTGQRIEYGQVPTAATLREKRLERTKVAIRETVAAGELEAFRAMFGSLVGELDPTDV 438 Query: 416 GKIAVHPAH 424 A+ AH Sbjct: 439 ALAALKLAH 447 Score = 58.0 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 +A + I G++A + P D++GA+ + GL G +I I + V V + A + Sbjct: 493 PRLARIFISAGREAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDVPEDAAEHVIE 552 Query: 440 QLQGGKIKGKTCRVRLLK 457 L G +++G+ R + Sbjct: 553 SLNGVRLRGRRVSARRDR 570 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 146/404 (36%), Positives = 216/404 (53%), Gaps = 10/404 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 TAF+ + + + NL LG T +P+Q ++P I+AG+D+ A+TG+GKTAAFGL + Sbjct: 67 TAFTRMGIDARVAI-NLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPM 125 Query: 62 LQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L ++ +AL+L PTRELA Q+A + A P + + GG +Q Sbjct: 126 LTRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTP-IRQFRVVGGASINVQV 184 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ +++ATPGRL+D +++G + L LV+DEAD+MLD+GF A+ + + P Sbjct: 185 QRLERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPR 244 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRL 235 RQTLLFSAT P+ + ++ DPL + ++ A I+Q + + K LL Sbjct: 245 ERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEY 304 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 LS H +VF TK + +C L++ G ++HG+ Q R++ L F G +VL Sbjct: 305 LSKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVL 364 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI + V N++L PE +VHRIGRTARAG G AI+FC+P E Sbjct: 365 VATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRA 424 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAE--MATLCIDGGKKAKMRP 397 I ++ K+ A + A G +K R Sbjct: 425 IEKAMKAKIAVVGGEEPFEAAKIRERGGPAGRPAQGARKRPARR 468 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 137/373 (36%), Positives = 198/373 (53%), Gaps = 8/373 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F + P L L T TP+Q A+P LAG+D+ A+TG+GKTAAF L L Sbjct: 4 TTFDGFGLAEP-LTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPL 62 Query: 62 LQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L + + T+AL+L PTRELA Q+A + L+ P + + + GG Q Sbjct: 63 LHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCV-VFGGVSVRPQI 121 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +L I+VATPGRLLD +++ + L L++DEADRMLDMGF + ++ P Sbjct: 122 QALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPD 181 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRL 235 RQ+++FSAT P+ I +S ++ +P + + + I Q + + K L Sbjct: 182 DRQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDF 241 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 +S + VVF TK + L++ G AL++HG+ Q R + L F +G VL Sbjct: 242 VSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVL 301 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+ ARG+ + + VVNF+L +PE +VHRIGRTARAG SG AI+ P E + Sbjct: 302 VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQ 361 Query: 356 ISDMLQIKLNWQT 368 I + I L Q Sbjct: 362 IIKLTGIDLTPQA 374 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 158/404 (39%), Positives = 214/404 (52%), Gaps = 7/404 (1%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT FS+L L P+ L ELG+ TP+Q A+P L G+DV A TGSGKT AF L Sbjct: 1 MTMTFSSLQ-LHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLL 59 Query: 60 GLLQQIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 +L Q+ + T+ALVL PTRELA Q+ L+ + P T + GG G Q + Sbjct: 60 PILHQLMSKPRGNTRALVLTPTRELAAQILESLQDVTTHTPLTG-AAVFGGVGMGPQEHA 118 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP-AS 177 + +IVATPGRLLDH ++ LD L LV+DEADRMLDMGF I ++R P Sbjct: 119 FRSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRK 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLL 236 RQTL FSAT P IAA++ + P+ + + A I Q Y S + K LL LL Sbjct: 179 RQTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALL 238 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VF TK + L G A +HG+ Q R Q L F +GS +VLV Sbjct: 239 KRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLV 298 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATD+AARG+D+++L VVNF++ E ++HR+GRTARA +G A +F +PEE +I Sbjct: 299 ATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLI 358 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEM-ATLCIDGGKKAKMRPGD 399 ++ L T P A ++ + + K + D Sbjct: 359 ERAIKRALPRVTVPDFDYHAKPTQKLEVPIAERIAEIRKKKAED 402 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 143/381 (37%), Positives = 212/381 (55%), Gaps = 3/381 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 + F L + P L L ++G+ T +Q ++P +L D A+TG+GKTAAFGL Sbjct: 12 LKNFEVLGLSQP-LLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGL 70 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 LL ID + + QAL+L PTRELA Q+ G++ ++++ L ++ + GG Q + Sbjct: 71 PLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDI 130 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + IIVATPGRL+D +++ V LDAL +V+DEAD ML+MGF + ID ++ + R Sbjct: 131 RRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRN 190 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSL 238 LFSAT I I P + I+ + + IE Q + + KI L+R L Sbjct: 191 IWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALRRFLDY 250 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + VVFC TK+D Q V D LN G + +LHGD+ Q RD + RF N + ++L+AT Sbjct: 251 DEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLLIAT 310 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ + V++F L DPE + HR GRTARAG G++I+ + ++ I+ Sbjct: 311 DVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIAS 370 Query: 359 MLQIKLNWQTPPANSSIATLE 379 L I+ PA +I Sbjct: 371 KLGIEFTQGEVPALEAITQKR 391 Score = 42.6 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 M T I+ G K + G +LG + G+ GA IG+I + H Y+ V + VA + Sbjct: 478 MKTYFINLGLKDDINKGALLGYVCDTTGISGAQIGRIVMDKTHSYMDVAEDVASQILTLD 537 Query: 442 QGGKIKGKTCRV 453 + G RV Sbjct: 538 GKQR-NGHDLRV 548 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 139/383 (36%), Positives = 202/383 (52%), Gaps = 24/383 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ +++ L N+ Y+ TPVQ A+P + AG+D+ A+TGSGKTAAF Sbjct: 145 VNTFAEIDLGEALNL-NIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFP 203 Query: 61 LL------QQIDASLF----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQ 110 ++ Q I+ A++L PTRELA Q+ E R+ + + K++ GG Sbjct: 204 IISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGT 262 Query: 111 PFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDV 170 P Q L+ I+VATPGRL D L++G VSL + L +DEADRMLDMGF I + Sbjct: 263 PVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKI 322 Query: 171 IRFA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSS 225 ++ P RQT+LFSAT+P I ++ + + + + + I Q+ Sbjct: 323 VQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHD 382 Query: 226 KGKIPLLQRLL--SLHQPSS-----CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR 278 K L LL + +VF TKK ++ + L G A ++HGD Q+ Sbjct: 383 SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQ 442 Query: 279 DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNS 338 +R+ L F G +LVATDVAARGLDI + VVNF+L D + +VHRIGRT RAGNS Sbjct: 443 EREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNS 502 Query: 339 GLAISFCAPEEAQRANIISDMLQ 361 GLA +F A +++++Q Sbjct: 503 GLATAFFNDNNTTMAKPLAELMQ 525 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 138/394 (35%), Positives = 200/394 (50%), Gaps = 5/394 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L L ++ LGY TPVQ A+PA+LAG+DV AKTG+GKTAAF L + Sbjct: 4 TFHDLG-LSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTM 62 Query: 63 QQIDASLFQ--TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ + L++ PTRELA Q+ R +A+ ++ + GG + Q DSL+ Sbjct: 63 DRLGHARHGQGPLLLIVTPTRELALQIESVCRTIAK-RSGHRVTCVVGGVSYNPQIDSLR 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +++ATPGRL+D + + L+ + TLV+DEADRMLDMGF + ++ P RQT Sbjct: 122 RGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQT 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT AI + +P+ +EI + IEQ + K LL LL+ Sbjct: 182 LLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLNER 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + +VF T+ L + G + +H D Q R + + G +LVATD Sbjct: 242 GGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVATD 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 V ARG+DI ++ VVN ++ E +VHRIGRT RAG +G AISF PE I + Sbjct: 302 VLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQKL 361 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + + + + S A+ A A + Sbjct: 362 IGKDIPEMSVESFDSSASDNALAAKATRANAQND 395 >UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=Dehalococcoides RepID=A5FST0_DEHSB Length = 561 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 199/365 (54%), Gaps = 3/365 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + N PA + + GY TP+QA A+P I+AG DV A+TG+GKTAA+ L ++ Sbjct: 2 SFESFN-FDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII 60 Query: 63 QQ-IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 Q+ + + + LV+ PTRELA Q++ R L + + ++ GG Q L+ Sbjct: 61 QKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQ-RARIRECSIYGGVNMDQQIRRLRS 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 ++VA PGRLLDH+ +GT+ + + TL++DEADRM DMGF I +++ QTL Sbjct: 120 GVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTL 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 LFSAT P + ++ Q +P+ +++ + + + Y S K PLL +L + Sbjct: 180 LFSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVET 239 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S ++F TK + + D +++ G + SL G+L Q R + F G+ ++LVATD+A Sbjct: 240 KSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIA 299 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDI + V+N+++ PE + HRIGRT R +G A S + I +L Sbjct: 300 ARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQRLLS 359 Query: 362 IKLNW 366 + Sbjct: 360 SPIQR 364 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 139/389 (35%), Positives = 203/389 (52%), Gaps = 22/389 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ + L N+ Y+ TPVQ ALP I A +D+ A+TGSGKTAAF L Sbjct: 158 IKSFNDV-ELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLP 216 Query: 61 LLQQI---------DASLFQ----TQALVLCPTRELADQVAGELRRLARFLPNTKILTLC 107 +L + DAS AL+L PTREL+ Q+ E R+ + + N K + Sbjct: 217 ILNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFS-YRSNIKPCVVY 275 Query: 108 GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI 167 GG Q L H +++VATPGRL+D + +G VSL+ + V+DEADRMLDMGF I Sbjct: 276 GGASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQI 335 Query: 168 DDVIRF--APA--SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYE 222 ++ P RQTL+FSAT+P+ I ++ + + + I Q+ Sbjct: 336 RRIVEQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLN 395 Query: 223 TSSKGKIPLLQRLLSLHQPSS-CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRD 281 + K K +L RLL P +VF TK+ + L ++ S+HGD Q +R+ Sbjct: 396 VADKDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTERE 455 Query: 282 QTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLA 341 L F +G +L+AT VAARGLDI +++ V+NF+L D E +VHRIGRT R G G A Sbjct: 456 HALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSA 515 Query: 342 ISFCAPEEAQRANIISDMLQIKLNWQTPP 370 SF + + + ++L+ + PP Sbjct: 516 TSFFSEKNQNVVRDLVELLR-ESKQAVPP 543 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 6/375 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L + P Q + E+GYL TP+QA A+P +L G+DV A+TG+GKTA+F L ++ Sbjct: 225 FADLGLSEPVQ-RAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMD 283 Query: 64 QID---ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + A ++L+L PTRELA QVA + ++L L GG+ QRD L Sbjct: 284 ILSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLK-LNHALLIGGESMNDQRDVLS 342 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +++ATPGRL+D +G + L LV+DEADRMLDMGF ++ ++ P +RQT Sbjct: 343 KGVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQT 402 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 L FSAT I ++ ++P I + I K L+ LL Sbjct: 403 LFFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLRQE 462 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + + ++FCN K+D + +L + G +A LHGDL Q R TL +F GS ++LV +D Sbjct: 463 KVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSD 522 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+DI L V NF++ E +VHRIGRT RAG G A + +P++ + I + Sbjct: 523 VAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEKL 582 Query: 360 LQIKLNWQTPPANSS 374 + + Sbjct: 583 INAPIPRIEIEGLER 597 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 141/389 (36%), Positives = 219/389 (56%), Gaps = 17/389 (4%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L + P L E G +P+QA +LP LAGKD+ +A+TG+GKT AF L ++ Sbjct: 2 NFDQL--IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPII 59 Query: 63 QQIDASLFQ--------TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q + A + +A+V+ PTRELA QVA E ++ P +T+ GG +G Sbjct: 60 QNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEE---FSKSGPQLSTVTVYGGAAYGP 116 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q ++L+ ++V TPGRL+DHL++G + L A+ V+DEAD ML +GF+DAI+ +++ Sbjct: 117 QENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQT 176 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEI---DSTDALPPIEQQFYETSSKGKIPL 231 PA+RQT+LFSAT + I ++ + R+P+ +++ + A +E + + + + Sbjct: 177 PAARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKV-GRTRTRV 235 Query: 232 LQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGS 291 L LL+++ P +VF TK++ + + L G + +LHGDL Q R++ L F +G Sbjct: 236 LADLLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGR 295 Query: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 VLVATDVAARGLDI ++LVV + L DPE +VHR GRT RAG +G AI E + Sbjct: 296 VGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENR 355 Query: 352 RANIISDMLQIKLNWQTPPANSSIATLEA 380 + ++ + P + A Sbjct: 356 ELRNLEYRTGVQFKERPLPTPKEVQAASA 384 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 131/382 (34%), Positives = 196/382 (51%), Gaps = 10/382 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS P ++ + + + + TP+Q P L+G+D+ A+TGSGKTA+F L + Sbjct: 78 KFSEAG-FPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAI 136 Query: 63 QQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 A + L+L PTRELA QV + K L GG Q + Sbjct: 137 VHAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFC-YSAGFKSACLYGGASRTGQAE 195 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 +L +P +++ATPGRLLD L+ ++ LV+DEADRMLDMGF +I V+ Sbjct: 196 ALGQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPD 255 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQTL++SATWP + A++ D + I + ST A I Q + K L L Sbjct: 256 RQTLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSL 315 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L+ + +VF TKK +C L + G A ++HGD Q++RD+ L F G VL Sbjct: 316 LNSFDNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVL 375 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVA+RGLDI + ++N++ E ++HRIGRT R+ G A +F + ++ + A Sbjct: 376 VATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARE 435 Query: 356 ISDMLQIKLNWQTPPANSSIAT 377 + ++L+ + P IA Sbjct: 436 LIEVLK-EARQTIPDELFKIAE 456 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 151/411 (36%), Positives = 222/411 (54%), Gaps = 8/411 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L L L + GY T +QA A+P ILAG+D+ +A+TG+GKT AFGL ++ Sbjct: 2 SFDQLG-LRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIV 60 Query: 63 QQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 Q + + +AL+L PTRELA QV ++ AR + + GG Q L Sbjct: 61 QILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVS-LRCTVAFGGVRIEPQIARL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+VATPGRLLD + +SL ++ LV DEADRMLD+GFS I+ ++ P R+ Sbjct: 120 ERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRR 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT+ I A++ ++ P IEI A ++Q+ + + K+PLL L+ Sbjct: 180 TMLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEK 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + +VF T+ + D L G S +LHG Q R +TL F +G +LVAT Sbjct: 240 QKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI +L LVVN+++ PE +VHRIGRT RAG SG+A+S +PEE I D Sbjct: 300 DVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIED 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 +L+ ++ + + + + + L G K++ + L Sbjct: 360 LLRHQIPVEAVKGFTEDSDVPDFV--LYRPGNPKSERNAPRAIKELVAKKS 408 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 197/377 (52%), Gaps = 7/377 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L + + ++ E GYL+ TP+QA +P +L GKD+ A+TG+GKTAAF L ++ Sbjct: 25 TFEQLELCAET-VRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPII 83 Query: 63 QQI----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + +Q +LVL PTRELA QV + ++L + + GG Q Sbjct: 84 ELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLA-LRSDAVFGGVSIRPQVKR 142 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 LQ I+VATPGRLLD + + + D L LV+DEADRMLDMGF I VI + P +R Sbjct: 143 LQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNR 202 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLS 237 Q ++FSAT+ I ++ + DP+ I+ A P IE + K+ LL L+ Sbjct: 203 QNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIK 262 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 ++ +VF TK V L A ++HG+ Q R + L F NG ++LVA Sbjct: 263 TNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVA 322 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARG+DI L V+N +L E +VHRIGRT RAG +G AIS A EEA I Sbjct: 323 TDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAIE 382 Query: 358 DMLQIKLNWQTPPANSS 374 + L Sbjct: 383 KFIGNPLPKVDVVGFEQ 399 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 137/399 (34%), Positives = 201/399 (50%), Gaps = 7/399 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + + ++ GY T TP+Q A+P +L G+DV A+TG+GKTAAF L ++ Sbjct: 2 SFKQFS-FDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60 Query: 63 QQIDASLFQ----TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 Q++ F + LVL PTRELA Q+ L + + GG Q + Sbjct: 61 QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELG-VEAGIRSAAVFGGVGAMPQIQA 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 + + +IVA PGRLLD + +G + LD ++TLV+DEADRMLDMGF I ++ P R Sbjct: 120 ARRSS-VIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRR 178 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 Q LLFSAT P+ I ++ ++ P +++ +T +E FY S K LL ++L Sbjct: 179 QNLLFSATMPDDIRDLADKILYRPATVQVANTAPAKTVEHVFYPVSQHLKNNLLFKVLEQ 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 S +VF TK + + L G A L G++ Q R + L F +GS +V+VAT Sbjct: 239 TDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 D+AARG+D + VVN ++ E + HRIGRT RAG SG A SF ++ + I Sbjct: 299 DIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIEK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + + +T G K A R Sbjct: 359 AVGYSIEHRTLEDFDYDKPNTHPAPAKRGGGRKPAADRK 397 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 140/385 (36%), Positives = 217/385 (56%), Gaps = 12/385 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L + P L E G +P+QA +LP LAG+D+ +A+TG+GKT AF L ++ Sbjct: 2 NFDQL--IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPII 59 Query: 63 QQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 Q+++ S + +A+V+ PTRELA QVA E ++ +T+ GG + Q ++L Sbjct: 60 QKLEPSRERARPPRAIVVAPTRELAKQVAEE---FSKSGVGLTTVTVYGGASYAPQENAL 116 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGRL+DHL++G + L A+ V+DEAD ML +GF+DAI+ +++ P SRQ Sbjct: 117 RRGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQ 176 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEI---DSTDALPPIEQQFYETSSKGKIPLLQRLL 236 T+LFSAT I +S R+P+ +++ + A +E + + +L LL Sbjct: 177 TMLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRV-GRSRTRVLADLL 235 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +++ P +VF TK++ + + L G A +LHGDL Q R++ L F +G VLV Sbjct: 236 TIYNPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLV 295 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARGLDI ++LVV + L DPE +VHR GRT RAG +G AI E + + Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGL 355 Query: 357 SDMLQIKLNWQTPPANSSIATLEAE 381 + ++ + P + A+ Sbjct: 356 ERITGVRFIERPLPTPKEVQAASAK 380 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 11/372 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS +PP ++ + Y T TP+Q +P +L+GKDV A+TG+GKTAAF L LL Sbjct: 2 SFSNFGFIPPIG-KAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60 Query: 63 QQIDASLFQ-------TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 ++ L+L PTRELA Q+ EL+R + F+ +T I+++ GG + +Q Sbjct: 61 NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFM-DTNIVSVVGGVSYKLQ 119 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L+ + +VATPGRL+D +++ ++L ++ LV+DEADRMLDMGF I + Sbjct: 120 NKLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTS 179 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYET-SSKGKIPLLQ 233 +Q L+F+AT + I I+ + +DP I ++ + + I+Q Y K +L Sbjct: 180 QDQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLV 239 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 +L+ + ++F TK++ + D L + + +LHGD+ QR+R +T+ RF N + Sbjct: 240 DVLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQ 299 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATDVAARG+D+ + V+NF+L E ++HRIGRT RA G AIS +E Sbjct: 300 ILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFML 359 Query: 354 NIISDMLQIKLN 365 I IK+ Sbjct: 360 QKIEKYANIKIE 371 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 152/381 (39%), Positives = 214/381 (56%), Gaps = 2/381 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 ++FS L + P L + LG+ T + +Q A+PA + G D+ + TGSGKT AF + Sbjct: 5 SSFSALGI-SPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPA 63 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L+ ID Q L LCPTRELA Q+ E+ +LA F+ + + GG F Q D+L+ Sbjct: 64 LECIDPEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRR 123 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 +V TPGR++D ++ G + LD L L++DEAD MLDMGF + I+ + P +QTL Sbjct: 124 GVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTL 183 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT I+ + R ++P+ I I+ +P IEQ +YE +I +L RLL + Sbjct: 184 FFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGK 243 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF NTKK V D L G LHGD+ Q R++ + F GS R+LVATD+ Sbjct: 244 IKMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDI 303 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD+ ++ VVNFEL DPE +VHRIGRTARAG G AI+F + + I + Sbjct: 304 AARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERFI 363 Query: 361 QIKLNWQTPPANSSIATLEAE 381 +KL + + L E Sbjct: 364 GVKLTPEPVLTAVQVDQLRTE 384 Score = 46.4 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%) Query: 370 PANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAV 429 P + + TL ++GG+ +RP D+ G + ++ +G I + P H + V Sbjct: 455 PQKGDSWQHKGDTVTLFMNGGRMIGLRPKDIAGLFYNTVEMEKGAVGDIRIFPKHSLIEV 514 Query: 430 RQAVAHKAWKQLQGGKIKGKTCRVR 454 +VA + L + G VR Sbjct: 515 DASVAPLLLEALATATVCGYEVNVR 539 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 143/422 (33%), Positives = 208/422 (49%), Gaps = 38/422 (9%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F + L TN+ Y TPVQ A+P IL+G+D+ A+TGSGKTAAF + Sbjct: 266 ITSFDDIK-LTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVP 324 Query: 61 LLQQI---------------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILT 105 +L ++ LVL PTRELA Q+ E ++ + + + Sbjct: 325 ILNRMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFS-YRSRMRPAV 383 Query: 106 LCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSD 165 L GG Q L H+IVATPGRL D + +G + L+ L LV+DEADRMLDMGF Sbjct: 384 LYGGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEP 443 Query: 166 AIDDVIRF--APA--SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQF 220 I +I P RQTL+FSAT+P+ I ++ + + + + + I Q Sbjct: 444 QIRHIIENRDMPPTGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTI 503 Query: 221 YETSSKGKIPLLQRLLSLHQPSS--------CVVFCNTKKDCQAVCDALNEVGQSALSLH 272 + K L LLS + S ++F TKK A+ + L + S+H Sbjct: 504 LWVNENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIH 563 Query: 273 GDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRT 332 GD QR+R+ L F +G +LVAT VAARGLDI ++ V+N++L D E +VHRIGRT Sbjct: 564 GDRSQREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRT 623 Query: 333 ARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 R GN G+A SF + + + ++L N + + EMA G ++ Sbjct: 624 GRMGNLGIATSFFNEKNRNIVSDLVELL--------IETNQELPSFLEEMANDRYGGPRR 675 Query: 393 AK 394 + Sbjct: 676 SN 677 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 148/388 (38%), Positives = 215/388 (55%), Gaps = 8/388 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F++L ++ P L NL +L Y T TPVQ A+PA+L GKDV A+TG+GKTA F L LL Sbjct: 36 SFASLGLIDP-LLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 94 Query: 63 QQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q++ S + + LVL PTRELA+QV + L + + L GG Q Sbjct: 95 QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGL-DLRFLAAYGGVSINPQMM 153 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ ++VATPGRLLD ++ V D + TLV+DEADRMLD+GF+ ++ V P Sbjct: 154 KLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQ 213 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLL 236 RQTLLFSAT+ + I ++ + R P+ I + + I+Q + K L L+ Sbjct: 214 RQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFMHLV 273 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + +VF T+ + + L+E G + ++HGD Q R + L RF G ++LV Sbjct: 274 AENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLV 333 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARGLDI L LV+N +L + +VHRIGRT RAG SG+A+S +EA + I Sbjct: 334 ATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAI 393 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMAT 384 ++ L + P + + +T Sbjct: 394 EALIGQTLRREEEPGFEAEHRVPETSST 421 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 151/449 (33%), Positives = 231/449 (51%), Gaps = 15/449 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGLGL 61 F + + P + + ++G+ T TP+Q ALP +LAG D A TG+GKTAAFG+ L Sbjct: 45 NFESFGLSAP-VMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPL 103 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ ID+++ TQALVL PTRELA QVA +L L + +++T+ GG + Q D ++ Sbjct: 104 IENIDSTVKDTQALVLSPTRELALQVAEQLTLLGK-KKGVRVVTIYGGASYRTQIDGIKR 162 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS---- 177 HI+VATPGRL+D L++ + L ++ T+V+DEAD ML MGF +A++ ++ Sbjct: 163 GAHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDS 222 Query: 178 ----RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLL 232 +T LFSAT + ++ +P + ++ IEQ +Y + K ++ Sbjct: 223 VRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVI 282 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 RLL ++FC TK + + D L + G A SLHGD Q++R+ TL +F Sbjct: 283 GRLLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQV 342 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 +V+VATDVAARGLDIK L VVN L WD E +VHRIGRT R G G AI+ PE+ Sbjct: 343 KVIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQLTL 402 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMA---TLCIDGGKKAKMRPGDVLGALTGDIG 409 + + L P+ +A L+ + +D D++ L Sbjct: 403 LRRVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLIQDLIQAED 462 Query: 410 LDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 ++ ++ K + + K Sbjct: 463 INFKELSKEELLARFIAAYFPNVFVKKDL 491 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 199/384 (51%), Gaps = 13/384 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F P L+ + G+ T +Q+ P L+G+DV A+TGSGKT + L Sbjct: 136 VETFDEAG-FPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP 194 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A L+L PTRELA Q+ E+ + + + + GG P G Q Sbjct: 195 AIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGK-SSRIRNTCVYGGVPKGPQ 253 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L + +ATPGRL+D L+ G +L + LV+DEADRMLDMGF I +I Sbjct: 254 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR 313 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQT ++SATWP+ + ++ D + + I S D A I Q S K + Sbjct: 314 PDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 373 Query: 234 RLLS---LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 + L ++ + C++F TK+ + L + G ALS+HGD +Q++RD L F G Sbjct: 374 KHLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 433 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + ++VATDVA+RG+D++ + V+N++ + E +VHRIGRT RAG G AI+F + + Sbjct: 434 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNS 493 Query: 351 QRANIISDMLQIKLNWQTPPANSS 374 ++A + +L + Q P + Sbjct: 494 KQARDLVTIL-TEAKQQIDPRLAE 516 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 153/456 (33%), Positives = 239/456 (52%), Gaps = 11/456 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F+ + + L+ LG+ MTPVQ +P +L + D+ A+TG+GKTAAFG+ Sbjct: 1 MKTFAEF-EINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q D L +TQALVLCPTREL QVAG+L + R++ KI+ + GG Q + L Sbjct: 60 PLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEEL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGRL D +++G V L ++ +V+DEAD ML MGF D ++ ++ P S+ Sbjct: 120 RKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P +AAI+ +DPL I + +A ++ +Y S++ + L+R+ + Sbjct: 180 TLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADM 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + + + D L E G SA +LHGDL Q RD + +F + + R+LVAT Sbjct: 240 NPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N+ L + + HR GRT RAG G++I+ E + I Sbjct: 300 DVAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIER 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 L+ P+ I ++ KK ++ + L + + Sbjct: 360 CLKKNFEEGRIPSGHEICKR---RLLSHMEAVKKTEIDAEHIDPFLPAISK-TLESLDRE 415 Query: 419 AVHPAHVYVAVRQAVA----HKAWKQLQGGKIKGKT 450 + V + + +A + K KT Sbjct: 416 ELIKRFVSMEFNRFLASYRNAPDLNTFEKTPPKKKT 451 Score = 51.0 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 38/114 (33%) Query: 344 FCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA 403 + A N K + + L I+ GKK + P ++ Sbjct: 430 LASYRNAPDLNTFEKTPPKKKTREAAAGKPYRLASRKKFTPLFINAGKKDGISPKRLMRD 489 Query: 404 LTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 L+ G+ IG+I V+ + A K + L+ I G+ V + + Sbjct: 490 LSDAAGMPDVRIGRIEVNNTTSLLEADSRFAPKILQALKSLTINGRYVAVEIDR 543 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 131/381 (34%), Positives = 204/381 (53%), Gaps = 22/381 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++AF+ ++ L N+ Y+ TP+Q A+P +AG+D+ A+TGSGKTAAF Sbjct: 420 VSAFAEIH-LGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFP 478 Query: 61 LL-----QQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 ++ Q+ + AL+L PTREL+ Q+ E ++ + + K++ GG P Sbjct: 479 IICGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFS-YKTGLKVVVAYGGAPI 537 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q +L+ I+VATPGRL+D +++ VSL + L +DEADRMLDMGF I ++ Sbjct: 538 SQQFRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVE 597 Query: 173 FA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKG 227 P +RQT+LFSAT+P I ++ + + + + + I Q+ Sbjct: 598 QMDMPPPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTD 657 Query: 228 KIPLLQRLLSLH-------QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDR 280 K L LL + + +VF TK+ A+ L G +A ++HGD Q +R Sbjct: 658 KRYHLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMER 717 Query: 281 DQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGL 340 ++ L F +G+ ++VATDVAARGLDI + V+NF+L + +VHRIGRT RAG SGL Sbjct: 718 ERALKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGL 777 Query: 341 AISFCAPEEAQRANIISDMLQ 361 A +F A + +++Q Sbjct: 778 ATAFFNDGNLSLAKSLVELMQ 798 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 136/404 (33%), Positives = 206/404 (50%), Gaps = 14/404 (3%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 P + + + +P+Q+ A P +L+G D+ A+TGSGKT +F L + I+A Sbjct: 108 FPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQP 167 Query: 70 F-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 LVL PTRELA Q+ E R + K + GG QR LQ Sbjct: 168 TVKKGDGPIVLVLAPTRELAMQIERESERFGK-SSKLKCACIYGGADKYSQRALLQQGVD 226 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 +++ATPGRL+D L+ T +L + LV+DEADRMLDMGF I ++ RQTL+FS Sbjct: 227 VVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLMFS 286 Query: 185 ATWPEAIAAISGRVQRD-PLAIEIDSTDAL--PPIEQQFYETSSKGKIPLLQRLLS-LHQ 240 ATWP+ + ++ ++ P+ ++I + I+Q Y T KI L + L L Q Sbjct: 287 ATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLDCLTQ 346 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 ++F TKK C+++ LN+ G L++HGD Q+DRD + +F +G R+L+ATDV Sbjct: 347 KDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATDV 406 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI----I 356 A+RGLD+K + V N++ E +VHRIGRT RAG G A+SF E+ ++ + + Sbjct: 407 ASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKISREYVQM 466 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV 400 + ++ S + T+ K D Sbjct: 467 LHDAKQEIPIDLLDLASINPRYRTQYKTVSSSYYDIKKFNSADT 510 >UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomycetaceae RepID=Q7UNV7_RHOBA Length = 452 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 149/378 (39%), Positives = 226/378 (59%), Gaps = 6/378 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M +F L+ L P + + G+ T +P+QAA +P L GKDV QA+TG+GKTAAF + Sbjct: 43 MDSFDELD-LSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIP 101 Query: 61 LLQQID--ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 +L+Q+D QA+V+ PTRELADQVA E RLAR +P T+I L GG+ Q Sbjct: 102 ILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVP-TEIAVLSGGKNMNRQLRQ 160 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L++ ++V TPGR+ DHLQ+GT+ + + +V+DEADRMLD+GF I+ ++R P +R Sbjct: 161 LENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNR 220 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 QTLL SAT P + ++ +P+ I+ + A+ IEQ+++ + K+ LL+ LL Sbjct: 221 QTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLK 280 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALN-EVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +P ++FC TK+ + L+ E G + ++HGDL+QR+RD+ L + +G+ + LV Sbjct: 281 REKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLV 340 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDV RG+DI ++ +VNF++ D + +VHR+GRT R G G+A +F P E I Sbjct: 341 ATDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSI 400 Query: 357 SDMLQIKLNWQTPPANSS 374 + L S Sbjct: 401 EQRINKLLIRDKMDGFES 418 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 134/377 (35%), Positives = 198/377 (52%), Gaps = 12/377 (3%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 P L +L +T TP+Q P L+GKD+ +A+TGSGKT AF L I A Sbjct: 120 FPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQP 179 Query: 70 F-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 LVL PTRELA+Q+ E + + + GG P Q +L+ H Sbjct: 180 SLKYGDGPIVLVLAPTRELAEQIRQECVKFS-VESKIRNTCAYGGVPKSGQIYALKQGVH 238 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 I++A PGRL+D L++ +L + LV+DEAD+MLDMGF I ++ RQTL++S Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWS 298 Query: 185 ATWPEAIAAISGRVQRD-PLAIEIDSTDALP--PIEQQFYETSSKGKIPLLQRLLSL--H 239 ATWP+ + +++ + + P+ + + S I+Q+ Y KI L+ LL Sbjct: 299 ATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFR 358 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +VF TKK+ + AL G AL +HGD +Q +R L F G + +L+ATD Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATD 418 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VA+RGLDIK ++ VVNF+ E +VHRIGRT RAG G + +F ++ + A + + Sbjct: 419 VASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKI 478 Query: 360 LQIKLNWQTPPANSSIA 376 L+ + PP I+ Sbjct: 479 LR-ESEQPVPPQLEKIS 494 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 8/398 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L L LN+LG+ P+Q A +P +L G+DV QA TGSGKTAAF L Sbjct: 1 MTKFQELG-LKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLS 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ+I Q L++ PTRELA Q+ E+++ ++ K+ T+ GGQ G+Q D+L+ Sbjct: 60 MLQEIQPK-NGIQGLIMAPTRELAMQITDEIKKFGKYT-GIKVATVYGGQGMGLQLDALE 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I+VATPGRL+DHL++G++ L + +V+DEAD MLDMGF D I ++ AP R Sbjct: 118 RGVEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVM 177 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P I +S +P +D+ D + I+Q + + K L + Sbjct: 178 SLFSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPT 237 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + +VFC+TK + V L++ A+++ GD+ Q R+Q++ +F +G A +LVATD Sbjct: 238 K-GQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATD 296 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VA+RG+D+ +ELV+N+++ + HRIGRTARAG G A++F + N+I Sbjct: 297 VASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIKRQ 356 Query: 360 LQIKLNWQTPPANSSIA---TLEAEMATLCIDGGKKAK 394 +++ + IA L+ +M + G ++ Sbjct: 357 IKVPIKDLNEEMGIEIAIPDPLKRQMPSRRYGGQSRSN 394 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 131/448 (29%), Positives = 201/448 (44%), Gaps = 40/448 (8%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F P + + Y T T +Q+ P L+G+D+ A+TGSGKT A+ L Sbjct: 114 ILTFQE-GCFPDYCMKMIETQNYTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYILP 172 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I + ALVL PTRELA Q+ + + + GG P G Q Sbjct: 173 AIVHITHQPYLQRGDGPMALVLAPTRELAQQIQQVAADFGKA-SRIRNTCVFGGAPKGSQ 231 Query: 116 RD------SL-------------------QHAPHIIVATPGRLLDHLQKGTVSLDALNTL 150 +L + I +ATPGRL+D L+ G V+L L Sbjct: 232 LRDWREFGALCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYL 291 Query: 151 VMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST 210 V+DEADRMLDMGF I ++ QTL++SATWP+ + +++ +D + + I + Sbjct: 292 VLDEADRMLDMGFEPQIRKIVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGAL 351 Query: 211 DALPP--IEQQFYETSSKGKIPLLQRL---LSLHQPSSCVVFCNTKKDCQAVCDALNEVG 265 I Q K L L + Q + ++F TKK + + G Sbjct: 352 QLCANHRIVQIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNG 411 Query: 266 QSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH 325 ++ +HGD Q +RD L F +G + +LVATDVAARGLD+ + V+N++ E + Sbjct: 412 WPSICIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDY 471 Query: 326 VHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATL 385 +HRIGRTAR+ +G A +F P ++A + +L+ + N P IA + + Sbjct: 472 IHRIGRTARSNKTGTAYTFFTPGNMKQAKELIAVLK-EANQAINPKLFEIANMARNNS-- 528 Query: 386 CIDGGKKAKMRPGDVLGALTGDIGLDGA 413 G + P +L G + G Sbjct: 529 YGGGRNSESLPPYKLLQEPWGRESMQGT 556 >UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Trypanosomatidae RepID=DDX17_TRYBB Length = 568 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 196/368 (53%), Gaps = 10/368 (2%) Query: 1 MTAFSTL-NVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 M++F L ++PP L L + TPVQA + P +L+G+D+ AKTGSGKT F + Sbjct: 99 MSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMV 158 Query: 60 GLLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 L I +VL PTRELA Q+ E +++ + + GG P G Sbjct: 159 PALAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPG--DVYCGCVYGGAPKGP 216 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L+ HI+VATPGRL+D L ++L + LV+DEADRMLDMGF + + Sbjct: 217 QLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQI 276 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLL 232 RQT++FSATWP I ++ Q+ + I + ST+ A + Q+F T K L Sbjct: 277 RPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDEL 336 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 ++L+ H+ +VFC K+ + L G A+++HGD EQR R+ L RF Sbjct: 337 RKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPR 396 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 LVATDVAARGLDIK LE V+N++ + +VHRIGRT RAG G + +EAQ Sbjct: 397 LCLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQI 456 Query: 353 ANIISDML 360 + L Sbjct: 457 TPSVLKEL 464 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 614 e-174 UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cell... 605 e-171 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 604 e-171 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 603 e-171 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 603 e-171 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 600 e-170 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 598 e-169 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 598 e-169 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 594 e-168 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 594 e-168 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 592 e-167 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 592 e-167 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 591 e-167 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 590 e-167 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 590 e-167 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 590 e-167 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 589 e-167 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 587 e-166 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 587 e-166 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 586 e-166 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 586 e-166 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 585 e-165 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 585 e-165 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 583 e-165 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 582 e-165 UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacter... 581 e-164 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 581 e-164 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 579 e-164 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 579 e-164 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 579 e-164 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 579 e-164 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 579 e-164 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 578 e-163 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 578 e-163 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 578 e-163 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 577 e-163 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 577 e-163 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 576 e-163 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 576 e-163 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 576 e-163 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 576 e-163 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 576 e-163 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 574 e-162 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 573 e-162 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 573 e-162 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 572 e-162 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 572 e-161 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 571 e-161 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 571 e-161 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 570 e-161 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 570 e-161 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 569 e-161 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 569 e-160 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 569 e-160 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 568 e-160 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 568 e-160 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 568 e-160 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 568 e-160 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 567 e-160 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 567 e-160 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 567 e-160 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 566 e-160 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 566 e-160 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 566 e-160 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 565 e-159 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 564 e-159 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 564 e-159 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 564 e-159 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 563 e-159 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 563 e-159 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 563 e-159 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 563 e-159 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 563 e-159 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 563 e-159 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 562 e-159 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 562 e-159 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 562 e-159 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 562 e-158 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 562 e-158 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 561 e-158 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 561 e-158 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 561 e-158 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 561 e-158 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 561 e-158 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 561 e-158 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 561 e-158 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 561 e-158 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 560 e-158 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 559 e-158 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 559 e-158 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 558 e-157 UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 558 e-157 UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 557 e-157 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 557 e-157 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 557 e-157 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 557 e-157 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 557 e-157 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 556 e-157 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 556 e-157 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 556 e-157 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 556 e-157 UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromo... 556 e-157 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 556 e-157 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 556 e-157 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 555 e-156 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 555 e-156 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 555 e-156 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 554 e-156 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 554 e-156 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 554 e-156 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 554 e-156 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 554 e-156 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 554 e-156 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 554 e-156 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 553 e-156 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 553 e-156 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 553 e-156 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 553 e-156 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 553 e-156 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 553 e-156 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 553 e-156 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 552 e-156 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 551 e-155 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 551 e-155 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 551 e-155 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 551 e-155 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 551 e-155 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 550 e-155 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 550 e-155 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 550 e-155 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 550 e-155 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 550 e-155 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 549 e-155 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 549 e-155 UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteob... 549 e-155 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 549 e-155 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 549 e-155 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 549 e-154 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 549 e-154 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 549 e-154 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 549 e-154 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 548 e-154 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 548 e-154 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 547 e-154 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 547 e-154 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 547 e-154 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 547 e-154 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 547 e-154 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 547 e-154 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 546 e-154 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 546 e-154 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 546 e-154 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 546 e-154 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 546 e-154 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 546 e-154 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 546 e-153 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 546 e-153 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 546 e-153 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 545 e-153 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 545 e-153 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 545 e-153 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 545 e-153 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 544 e-153 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 544 e-153 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 544 e-153 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 544 e-153 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 544 e-153 UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 543 e-153 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 543 e-153 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 543 e-153 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 543 e-153 UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase ... 543 e-153 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 542 e-153 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 542 e-152 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 542 e-152 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 542 e-152 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 542 e-152 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 542 e-152 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 541 e-152 UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostrid... 541 e-152 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 541 e-152 UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixo... 541 e-152 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 541 e-152 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 541 e-152 UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Euka... 540 e-152 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 540 e-152 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 540 e-152 UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobact... 540 e-152 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 539 e-152 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 539 e-152 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 539 e-152 UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform ... 539 e-152 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 539 e-152 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 539 e-151 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 539 e-151 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 538 e-151 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 538 e-151 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 538 e-151 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 537 e-151 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 537 e-151 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 537 e-151 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 537 e-151 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 537 e-151 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 536 e-151 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 536 e-151 UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina lo... 536 e-151 UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabd... 535 e-151 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 535 e-150 UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryot... 535 e-150 UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 535 e-150 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 535 e-150 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 535 e-150 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 535 e-150 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 535 e-150 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 535 e-150 UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Try... 534 e-150 UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Gl... 534 e-150 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 534 e-150 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 534 e-150 UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=... 534 e-150 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 533 e-150 UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfur... 533 e-150 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 533 e-150 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 533 e-150 UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=... 533 e-150 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 533 e-150 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 533 e-150 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 533 e-150 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 533 e-150 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 533 e-150 UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, puta... 532 e-150 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 532 e-150 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 532 e-150 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 532 e-149 UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 532 e-149 UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA 532 e-149 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 532 e-149 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 532 e-149 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 532 e-149 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 532 e-149 UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gru... 532 e-149 UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME 531 e-149 UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax... 531 e-149 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 531 e-149 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 531 e-149 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 531 e-149 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 530 e-149 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 530 e-149 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 530 e-149 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 530 e-149 Sequences not found previously or not previously below threshold: >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 244/426 (57%), Gaps = 4/426 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M++F + L L ++++G+ +P+QAA +P +L G+DV QA+TG+GKTAAFG+ Sbjct: 16 MSSFESFG-LNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIP 74 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ QA+VL PTRELA QVAGE+R++A++ + + + GGQ Q +L+ Sbjct: 75 LVERVSTEPR-VQAIVLTPTRELAIQVAGEIRKIAKY-KRVRSVPIYGGQSIVHQIRALK 132 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I++ TPGR+LDH+ +GT+SL + +V+DEAD MLDMGF D I+ ++R P+ RQT Sbjct: 133 QGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQT 192 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT+P + ++ R RDP I ++ + +P I+Q Y+ + K+ L R++ Sbjct: 193 MLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSE 252 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TK+ + +AL G A LHGDL Q RD+ + +F +LVATD Sbjct: 253 DIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATD 312 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V+N+++ DPE +VHRIGRT RAG GLAI+ P E + I Sbjct: 313 VAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIERE 372 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 ++ K+ + P+ +A +AEM I + D DI Sbjct: 373 IKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASAL 432 Query: 420 VHPAHV 425 + A Sbjct: 433 LKLASS 438 Score = 61.8 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%) Query: 378 LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKA 437 M ++ G+ ++M P D + A++ + G+ G +G+I + ++ V + A Sbjct: 456 ARPGMVRFFVNVGRTSRMSPQDFVRAISEEAGVPGDAVGRIDMFEKFTFIEVEEESAPFV 515 Query: 438 WKQLQGGKIKGKTCRVRLLK 457 ++ L+ +I G + K Sbjct: 516 YEALRQSRINGTRVNLEPAK 535 >UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cellular organisms RepID=DBPA_ECOLI Length = 457 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 457/457 (100%), Positives = 457/457 (100%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG Sbjct: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ Sbjct: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ Sbjct: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV Sbjct: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML Sbjct: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV Sbjct: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK Sbjct: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 604 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 167/422 (39%), Positives = 248/422 (58%), Gaps = 5/422 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F LN L L L E+G+ +P+Q A+P L G+D+ QA+TG+GKTAAFG+ Sbjct: 18 ITSFEDLN-LDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIP 76 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+I+ QALV+ PTREL QVA E+ ++ + ++L + GGQP Q SL+ Sbjct: 77 IIQKINEKDRHIQALVMSPTRELCIQVADEISKIGK-TKRIRVLPVYGGQPIERQIRSLK 135 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +++ TPGRLLDH+++GT+ L+ +N LV+DEAD MLDMGF D ++++I+ P RQT Sbjct: 136 RGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQT 195 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P I +IS + R P + I P I+Q +YET + K+ L R+L Sbjct: 196 MLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYET--RDKVDGLCRILDTT 253 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TKK + AL G A LHGDL Q RD+ + +F +G +LVATD Sbjct: 254 DDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATD 313 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI ++ VVNF++ D E +VHRIGRT RAGN+G+A++F P E ++ +I Sbjct: 314 VAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERS 373 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 ++ K+ T P ++S+ + E + + + T + D DI A Sbjct: 374 IKTKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETLEKDYDVQDIAAAA 433 Query: 420 VH 421 + Sbjct: 434 LK 435 Score = 69.1 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 41/100 (41%) Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 L+ ++ P + + M L ++ G+ +++ D++ ++ + + IG+ Sbjct: 442 KALEEPAEEESLPDALANTGAKPGMVRLFVNIGRSSRVTVRDIVQSIAIEAEIPARSIGR 501 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 I+++ +V V A K + I+G + K Sbjct: 502 ISIYDKFSFVEVPMEHAEKVLAVMHRNTIRGCRVNMEPAK 541 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 154/394 (39%), Positives = 241/394 (61%), Gaps = 2/394 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ + L + ++G+ TP+QA A+P IL GKDV QA+TG+GKTAAFG+ + Sbjct: 5 KTFAEF-AISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPI 63 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++++D QALVL PTRELA Q A E RL ++ ++ + GGQP Q +L+ Sbjct: 64 IERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKG 123 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 +++ TPGR++DH+++GT+ LD++ ++DEAD+MLDMGF + I+D+ R P RQT+ Sbjct: 124 TVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTI 183 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I I+ R QRDP ++I + +P IEQ + E + K+ L R L ++ Sbjct: 184 LFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNN 243 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P +VFCNTK+ + + G +LHGD++Q+ RD+ + RF +GS VL+ATDV Sbjct: 244 PELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDV 303 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ +++V N+++ D E +VHRIGRTARAG +G +++F AP E + I Sbjct: 304 AARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRYA 363 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 +I++ P +A ++ ++ + A Sbjct: 364 KIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAG 397 Score = 64.1 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%) Query: 370 PANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAV 429 P + E M I GK ++RP D++GA G+ + G+ IG+I ++ + YV V Sbjct: 465 PGTVENSGAEPGMVRFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVDV 524 Query: 430 RQAVAHKAWKQLQGGKIKGKTCRVRLL 456 A+ + + I+G+ + + Sbjct: 525 PLEHANLVAEVMGSKTIRGQELEISIA 551 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 169/479 (35%), Positives = 252/479 (52%), Gaps = 25/479 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M+ F + L L LGY T VQ + +PA L KD+ V+++TGSGKTA+FG+ Sbjct: 1 MSHFKNYQISHD-ILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L + + + QAL+L PTRELA QV ++ + RF K + G F Q+ L+ Sbjct: 60 LCELANWDENKPQALILTPTRELAVQVKEDITNIGRF-KRIKATAVFGKSSFDKQKAELK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI+V TPGR+LDH++KGT+ LD L+ LV+DEAD ML+MGF + ++ +I+ P R T Sbjct: 119 QKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P+ I +S + ++P IE+ + IE + + K LL+ +L Sbjct: 179 MLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P SC++FC TK+ + D L+++G +HG + Q DR + F G R LVATD Sbjct: 239 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+DI+++ LV+N++L + E +VHR GRT RAGN G AISF E + I + Sbjct: 299 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEY 358 Query: 360 LQIKLNWQTPPANSSIATLEAEM----------------------ATLCIDGGKKAKMRP 397 + ++ P+ +A + E L +GGKK K+R Sbjct: 359 IGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRA 418 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 D +G + G+ DIG I + YV + K ++ +KGK +V Sbjct: 419 VDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKA 477 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 166/515 (32%), Positives = 260/515 (50%), Gaps = 68/515 (13%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 L P + ++G+ +P+QA A+P I+ GKD+ QA+TG+GKTA FG+ + + ++ Sbjct: 25 LSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAETLNPRD 84 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 + QALVLCPTRELA QVA E+ ++ R + K L + GGQ Q +L++ +++ T Sbjct: 85 GRVQALVLCPTRELAIQVAQEISKIGR-QNDLKALPVYGGQSIDRQIRALRYGVQVVIGT 143 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR+LDHL + T+ L+ + +V+DEAD MLDMGF + I+ +++ P RQTLLFSAT P Sbjct: 144 PGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLFSATMPG 203 Query: 190 AIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFC 248 I ++ + ++P + I +P IEQ +YE K+ L R+L + + S ++FC Sbjct: 204 PIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIGSSIIFC 263 Query: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308 TK+ + AL G A LHGDL Q RD+ + +F +G A +L+ATDVAARGLD++ Sbjct: 264 RTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAARGLDVE 323 Query: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA-------------------PEE 349 ++ V+N+++ DPE +VHRIGRT RAG G+AI+ + Sbjct: 324 NVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTKARIQRRD 383 Query: 350 AQRANIISDM-----------------------------------------LQIKLNWQT 368 I + L++ + Sbjct: 384 LPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISELAEEYDPMEIAAATLKLLIEGPE 443 Query: 369 PPANSSIAT------LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 A E M L ++ G+ +RP D++ A+ + G+ G IG I ++ Sbjct: 444 AETEKDEAPEFGNTGAEPGMVRLFMNIGRAQGIRPQDIVRAIAEEAGIPGNVIGVINIYD 503 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +V V + VA + + IKG+ V K Sbjct: 504 KFTFVEVPEDVAGRVMGVMHQNMIKGRKISVEPAK 538 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 157/440 (35%), Positives = 241/440 (54%), Gaps = 4/440 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L L L ELGY + +P+QAA +P +L +DV QA+TG+GKTA+F L +L Sbjct: 9 FADLK-LSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILA 67 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +ID QALVL PTRELA QVA +R A ++P +L + GGQ +G Q +L+ Sbjct: 68 RIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGV 127 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H++V TPGR++DHL+KG++ L + T+V+DEAD ML MGF D ++ +++ P SRQT LF Sbjct: 128 HVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALF 187 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P AI I+ RDP I + + I Q+++ S K+ L R+L Sbjct: 188 SATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAENFD 247 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++F TK + + L G SA +++GD++Q+ R++T+ + +G +LVATDVAA Sbjct: 248 GMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAA 307 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD++ + V+N+++ DPE + HRIGRT RAG SG AI F AP E I + Sbjct: 308 RGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERATRQ 367 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKIAV 420 ++ P+ ++ + I A ++ + + +I Sbjct: 368 PISVLELPSVEAVNDVRISRFKEQIAETIAAGGLEVFHSLIEDYEREHNVPAVEIAAALA 427 Query: 421 HPAHVYVAVRQAVAHKAWKQ 440 A V + ++ ++ Sbjct: 428 KLARGDVPLLLDKKNEVRER 447 Score = 61.4 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 365 NWQTPPANSSIATLE-AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 P I A M + I+ G ++PG+++GA+ + LD IG+I ++ Sbjct: 482 ERPAAPRKERIPRAPDAGMQSFRIEVGHAHGVKPGNIVGAIANEASLDSKYIGRIEIYDD 541 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 + + + + ++ + + L+ + G+ + Sbjct: 542 YSTLDLPENLSPEQFNHLKTVWVAGQQLNISR 573 Score = 57.6 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 35/75 (46%) Query: 381 EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQ 440 +M ++ G ++P +++GA+ + GL+ IG+I + + + + + + + Q Sbjct: 643 DMEPYRVEVGHAHGVKPANIVGAIANEAGLEAKYIGRIEIFDDYSLLDLPAGMPTEVFDQ 702 Query: 441 LQGGKIKGKTCRVRL 455 L+ I R+ Sbjct: 703 LKSVAIGTHKLRLSR 717 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 161/524 (30%), Positives = 261/524 (49%), Gaps = 70/524 (13%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F + + ++G+ +P+Q +P IL G DV QA+TG+GKTAAFG+ Sbjct: 1 MMKFEDFQISND-IKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL+++ + Q Q+L+L PTRELA QVAGEL++L++F ++IL + GGQ G Q +L+ Sbjct: 60 LLEKVTSD-RQVQSLILTPTRELAIQVAGELQKLSKF-KRSQILPIYGGQSIGHQIKALK 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+LDHL + T+ L +++TL++DEAD MLDMGF + I+ +++ +RQT Sbjct: 118 RGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQT 177 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P I +S + +P + I + P I Q +++ K K+ L R++ Sbjct: 178 MLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSE 237 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++FC TKK + +AL G A LHGDL Q RD + +F + S L+ATD Sbjct: 238 TIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATD 297 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+D++++ V+N+++ DPE +VHRIGRT RAG G+A++ P E + I Sbjct: 298 VAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIEAE 357 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM-----------------RPGDVLG 402 +++ + Q P+ + + + I +++ P ++ Sbjct: 358 IKMTIPSQRIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYDDLVSDLLNQYPPNKIVA 417 Query: 403 ALTG----------DIGLDGADIG------------------------------------ 416 +L D G D D G Sbjct: 418 SLLKLAFYSHEDLNDDGYDFGDTGAQKGMTRFFINVGRNIELTPKKLAEEVSQLVGIPTK 477 Query: 417 ---KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +I + ++ V Q VA ++ L+ ++ G + K Sbjct: 478 SVGRIDIFDNFTFMEVPQEVAPFVYEGLKYSRVNGARINLEPAK 521 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 145/413 (35%), Positives = 225/413 (54%), Gaps = 3/413 (0%) Query: 16 TNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQAL 75 + ++G+ T +P+QAA +P + G+DV A+TG+GKTAAF L +L ++D S + QAL Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQAL 226 Query: 76 VLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLD 135 VL PTRELA QVA + A L +L + GGQ +G+Q L+ HI+V TPGR++D Sbjct: 227 VLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVID 286 Query: 136 HLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAIS 195 HL++G++ L L LV+DEAD ML+MGF + ++ ++ P +QT LFSAT P +I +S Sbjct: 287 HLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLS 346 Query: 196 GRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDC 254 + DP + I S I QQ+ + K+ L R+L + + + ++F TK++ Sbjct: 347 KQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNT 406 Query: 255 QAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 + + + L G SA +++GD+ Q R++T+ + +G +LVATDVAARGLD++ + VV Sbjct: 407 EELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVV 466 Query: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSS 374 N+++ D E +VHRIGRT RAG SG AI F P E + I + + P Sbjct: 467 NYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDE 526 Query: 375 IATLEAEMATLCIDGGKKAKM--RPGDVLGALTGDIGLDGADIGKIAVHPAHV 425 + I ++ + + ADI + Sbjct: 527 VNETRKAKFAQSITESLADPQVDLFRGLINSYAEEHETPLADIAAALATQSQS 579 Score = 71.1 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 L + + + PP + EMA I GK+ ++RPG ++GA+ + GL+ D GK Sbjct: 611 RSLNERFSGKEPPRFTD--RTGKEMAVYKIAVGKRQQVRPGAIVGAIANEGGLNSRDFGK 668 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 I++ H V + + + ++ L+ ++ G+ ++ Sbjct: 669 ISIFSEHSLVELPADLPMEVFEALEDTRVSGQLIKIEPD 707 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 147/436 (33%), Positives = 226/436 (51%), Gaps = 4/436 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L L P + +G+ +P+Q +P ++AG+DV A+TG+GKTAAF L +L Sbjct: 133 FGDLG-LSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILS 191 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +++ + QALVL PTRELA QVA A + IL + GGQP+G Q L+ Sbjct: 192 RLNLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGA 251 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H++V TPGR++DHLQKG++ + L +V+DEAD ML+MGF + ++ ++ P +Q LF Sbjct: 252 HVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 311 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P AI +S R P + + ST IEQ + + K+ L R+L + Sbjct: 312 SATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFD 371 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++F TK D + + + L G A +++GD+ Q R++T+ + +G +LVATDVAA Sbjct: 372 AMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 431 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD++ + V N+++ D E +VHRIGRT RAG SG A+ F P E + I + Sbjct: 432 RGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIERATKS 491 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKIAV 420 +LN P+ + + + D++ G+ DI Sbjct: 492 RLNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTYAEANGVTLEDIAAALA 551 Query: 421 HPAHVYVAVRQAVAHK 436 A A + Sbjct: 552 AGAQGGEKFLMEEAPR 567 Score = 70.7 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 PA EM + G + ++RPG ++GAL + GL+ D G+I++ H Sbjct: 594 ERFNKPAPRFTDRNGNEMEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEH 653 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 V + + + ++ L ++ G+ + Sbjct: 654 SLVELPADLPKQVFEALDQTRVSGQLINIEPD 685 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 5/447 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ LN L L +N++G+ +P+Q+ ++P + G D+ QA+TG+GKTAAFG Sbjct: 4 IKTFNELN-LKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSI 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L + QAL+L PTRELA QV EL R+A+ + IL + GGQP Q +L+ Sbjct: 63 ILNNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNM-RLNILPIYGGQPIDRQLRALR 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 + I+V TPGR+LDHL++ +++ + + LV+DEAD ML+MGF D I++V++ RQT Sbjct: 122 NGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQT 181 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P+AI +S R + D I I+ I Q +YE + + L R++ Sbjct: 182 LLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDA 241 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P + ++FC TKK + ++ G +HGD+ Q R TL +F + LVAT Sbjct: 242 DEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVAT 301 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D++++ V+N++L D E +VHRIGRT RA G A + P E I Sbjct: 302 DVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIEK 361 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + K+ + P I ++ + + + + + A D D+ Sbjct: 362 TTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKFIPYATELDDDYSLVDVAAA 421 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGK 445 + A + A + + + Sbjct: 422 LMKIAFS-NELAYEYTTNALEVPEPMR 447 Score = 53.0 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%) Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 + L P NSS L + G++ + P +++ + IG Sbjct: 434 EYTTNALEVPEPMRNSSARGASRGQKRLFVSAGRRDNVSPKELVQFFKDSSRIQPRQIGD 493 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 IA+ +V V ++ K G ++KG+ + + K Sbjct: 494 IAIMENFSFVNVDTSIVDDILKFSSGKRLKGRKINIEVAK 533 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 163/449 (36%), Positives = 239/449 (53%), Gaps = 18/449 (4%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT F L + +G+ TP+QA +P LA KDV QA+TG+GKTAAFG+ Sbjct: 1 MTITFQDF-QLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+++I+ QA+V+ PTRELA QV+ EL ++ + ++L + GGQ G Q +L Sbjct: 60 PLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRARVLPIYGGQDIGRQIRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + PHIIV TPGRLLDH+ + T+ L +NT+V+DEAD ML+MGF + I+ ++ PA Q Sbjct: 119 KKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQ 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P I I+ R +P +++ + + + I+Q + E + K L RLL + Sbjct: 179 TLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDI 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 P +VF TK+ + +ALN G +A +HGDL Q R L +F G+ VLVAT Sbjct: 239 QSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V NF++ DPE +VHRIGRT RAG +G+A++F P E I Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + K++ P + ++ D + + + L+ Sbjct: 359 TTKRKMDRMKAPTLDEAIEGQQQVTV--------------DRIRTIIEENNLNFYMTAAA 404 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIK 447 + H V V A K+ ++ Sbjct: 405 ELLEDHDSVTVVAAAIKMMTKEPDNTPVR 433 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 159/450 (35%), Positives = 250/450 (55%), Gaps = 7/450 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS+L + P L + ++G+++ +P+QA A+P IL G+DV QA+TG+GKTAAFG+ L Sbjct: 33 FSSL-AISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALD 91 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID Q L+LCPTRELA QVA E+++LA++ +I + GG Q SL+ Sbjct: 92 LIDVQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGV 151 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI++ TPGR++DH+++ T+ L+ + +++DEAD MLDMGF + I+ ++ P RQT+LF Sbjct: 152 HIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILF 211 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT + I I+ + Q+DP+ +++ + IEQ ++E SK K+ ++ RL+ ++ Sbjct: 212 SATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLK 271 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFCNTK+ + + L G A LHGDL Q R+ + +F G+ +LVATDVAA Sbjct: 272 LLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAA 331 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ ++ V+NF++ D E +VHRIGRT RAG SG A SF +E R I ++ Sbjct: 332 RGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKV 391 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGG--KKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 K+ P+ I + + + + D L G I +A Sbjct: 392 KVEKGVIPSFEDIVGVRKARFIEQLQQTIQESKDLNLYDDLLTQLNHAGFSTEQI--VAA 449 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKT 450 + A + L+ + G+ Sbjct: 450 LVKRSMGLEKNEFADQNLN-LEDDRRNGRD 478 Score = 77.6 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 44/81 (54%) Query: 377 TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHK 436 EA M L + G+K +RPGD++GA+ G+ + G IG I + YV V + VA++ Sbjct: 563 EREANMTRLMVSIGRKDFVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANR 622 Query: 437 AWKQLQGGKIKGKTCRVRLLK 457 ++G IKG+ + + + Sbjct: 623 VVDAMEGNTIKGRRVNIEVAR 643 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 159/447 (35%), Positives = 243/447 (54%), Gaps = 17/447 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + + +G+ TP+QA +P L KDV QA+TG+GKTAAFG+ Sbjct: 1 MTTFQELG-LSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++++ QALV+ PTRELA QV+ EL ++ + ++L + GGQ Q +L+ Sbjct: 60 IVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PH+IV TPGR++DH+ +GT+ L+ ++T+V+DEAD ML+MGF + I+ ++ PA RQT Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P+ I I+ R +P +++ + + +P I+Q + E K K +L RLL + Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQ 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + +ALN G +A +HGDL Q R L +F G+ +LVATD Sbjct: 239 APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V NF++ DPE +VHRIGRT RAG +G+A++F P E + + I Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERT 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + K+ PP + +A + + L Sbjct: 359 TKRKMERMKPPTLDEALEGQQRIAIEKLLN--------------VVETENLSFYKRAAEE 404 Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKI 446 + H V + A ++ + Sbjct: 405 LLEEHDSVTIVAACLKMLTREPDTTPV 431 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 152/421 (36%), Positives = 230/421 (54%), Gaps = 4/421 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L + + + +GY T +P+QAA +PA+L G+DV QA+TG+GKTAAF L +L Sbjct: 11 FAQLG-LSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLS 69 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID + QALVL PTRELA QVA + + +P ++L + GGQP+G Q +L+ Sbjct: 70 NIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGV 129 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+V TPGR++DHL + T+ L L TLV+DEAD ML MGF D ++ V++ PA RQ LF Sbjct: 130 HIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVALF 189 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I I+ +DP+ + I + I Q+++ S K+ L R+L + Sbjct: 190 SATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFD 249 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++F TK + + L G +A +++GD++Q R++T+ G +LVATDVAA Sbjct: 250 AMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAA 309 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD++ + V+N+++ +D E +VHRIGRT RAG SG AI F P E I + Sbjct: 310 RGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQ 369 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKIAV 420 + P+ ++ T I +L + + ++ Sbjct: 370 PIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFETEQNVPAIEVAAALA 429 Query: 421 H 421 Sbjct: 430 K 430 Score = 63.0 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + + PP + E M T I G + ++P +++GA+ + GL+ IG+I + Sbjct: 489 EQRPRRDVPPRGAP----EQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIGRIDI 544 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 H + + + LQ + G+ ++R L Sbjct: 545 HDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPL 580 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 159/424 (37%), Positives = 236/424 (55%), Gaps = 4/424 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F L L L L E+G+ +P+QA +PA+L G DV QA+TG+GKTAAFG+ + Sbjct: 7 QTFEELG-LNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPV 65 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L++ID S QAL+LCPTRELA QV+ EL RL++F+ +I + GG Q SL+ Sbjct: 66 LERIDTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKK 125 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HI+V TPGR++DH+++ T+ D + +V+DEAD MLDMGF + I+ ++ P RQT+ Sbjct: 126 GVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTI 185 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT + I +I+ R DP I++ + IEQ ++E + K+ ++ RL+ +H Sbjct: 186 LFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHH 245 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VFCNTK+ + + L G ++ +HGDL Q+ R + +F G +LVATDV Sbjct: 246 IKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDV 305 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ L+ V+N+++ D E +VHRIGRT RAG SG A S A +E R I Sbjct: 306 AARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYT 365 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG--DVLGALTGDIGLDGADIGKI 418 ++K+ P+ I + I K + + + G I Sbjct: 366 KVKIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEELYNDVLEMLHHSGFSTEQIVGA 425 Query: 419 AVHP 422 Sbjct: 426 MAKQ 429 Score = 69.9 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%) Query: 371 ANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVR 430 + EA M L + G+K + P D++GA+ G+ + G IG I ++ +V V Sbjct: 504 GERRQSAPEAGMTRLFLSLGRKDHIMPKDIVGAIAGEANIPGKTIGAIDIYDKFTFVDVP 563 Query: 431 QAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + A + + G IKGK ++ + K Sbjct: 564 ERDARAVLRAMDGNTIKGKPVQIDIAK 590 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 140/449 (31%), Positives = 238/449 (53%), Gaps = 7/449 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+TL L + + +++LG+ + +Q ++P L+G D+ QA+TG+GKTAA+ L + Sbjct: 4 NQFATLG-LKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPI 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + ++ + ++L+L PTRELA QV E++RL+++ L + GG Q +L+ Sbjct: 63 ITKMSDN-RGIKSLILAPTRELAVQVNEEIQRLSKYEK-IVTLAVYGGDSIDRQIRALRK 120 Query: 122 A-PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I+V TPGR+LD +++ + L+++ LV+DEAD ML+MGF D I +++ P+ RQT Sbjct: 121 GDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQT 180 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P+ IA ++ + + D + I + + IEQ ++ ++K ++ L RLL L Sbjct: 181 LLFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDL 240 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 PSS ++FC TK+ + L G +HGD+ Q R TL +F G+ +L+AT Sbjct: 241 DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIAT 300 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D++ + V N++L D E +VHRIGRT RA SG A S P++ I + Sbjct: 301 DVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQN 360 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + + + + P I + + ++ KA + A+ D I Sbjct: 361 VTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAIELTESYDAVSIISA 420 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIK 447 + + + + + ++ Sbjct: 421 LMKMKFE-NEIVFDYSSNKLEAPKKEDVR 448 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 254/459 (55%), Positives = 319/459 (69%), Gaps = 4/459 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T+FS+L+ L P+ L NL LGY MTP+QA +LP +L GKDV Q KTGSGKTAAFGLGL Sbjct: 4 TSFSSLD-LHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGL 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L ++ F+ Q+LVLCPTRELADQVA E+R+LAR + N K+LTLCGG PFG Q SL+H Sbjct: 63 LANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HIIV TPGR+ +HL+KG ++LD LNT V+DEADRML+MGF DAID V+ AP RQ L Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNL 182 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSLHQ 240 LFSAT+P I +I+ R+ DP+ + + T I Q F++ + ++ LQ LL HQ Sbjct: 183 LFSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQ 242 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P S V+FCNTK+ Q V D L S +LHGDLEQRDRD+ LVRFAN S +LVATDV Sbjct: 243 PESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDV 302 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI+SL+ VVNFEL+ DPEVHVHRIGRT RAGN G+A+S +E I + + Sbjct: 303 AARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYM 362 Query: 361 QIKLNWQTPPANSSIAT--LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 I + + P+ + AEM TL IDGGKK K+RPGD+LGALTG G++G +GKI Sbjct: 363 NIDIRDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVGKI 422 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 V H YVAV VA A K+L+ GK+KG++ RV ++ Sbjct: 423 NVFDFHAYVAVHNTVAKAALKKLESGKMKGRSFRVSRMR 461 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 161/424 (37%), Positives = 249/424 (58%), Gaps = 4/424 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + + E+G+ +P+QA A+P + G+D+ QA+TG+GKTAAFG+ LL Sbjct: 5 KFDEL-QLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q++D + + QA++L PTRELA QVA E+RRLA+F+ TK+L + GGQ Q SL+ Sbjct: 64 QKVDPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKDG 123 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+V TPGR++DH+++ TV +D ++T+V+DEAD ML+MGF + ++ ++ P RQTL+ Sbjct: 124 TQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLM 183 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+AIA I+ + Q DP+ + + + +P + Q +YE K K+ ++ RLL ++ P Sbjct: 184 FSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAP 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK+ + AL G A LHGDL+Q RD+ + F NG +LVATDVA Sbjct: 244 KLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ +E V N+++ D E +VHRIGRT RAG G A S +E + I + Sbjct: 304 ARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCK 363 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIA 419 K+ Q P+ + I ++ E + + +++ + D+ Sbjct: 364 TKIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIEKKLIEEDYTSMDLAAAL 423 Query: 420 VHPA 423 + Sbjct: 424 LKMN 427 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 44/82 (53%) Query: 375 IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVA 434 + + +MA L I+ GK ++ PGD+LGA+ G+ G+ G +G I ++ + +V V A Sbjct: 486 LGEGDGQMARLFINIGKAQRVTPGDILGAVAGESGIPGRMVGSIDMYDGYTFVDVPGQYA 545 Query: 435 HKAWKQLQGGKIKGKTCRVRLL 456 + K + KIKG+ V Sbjct: 546 DEVLKAMSHAKIKGRNVHVEKA 567 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 162/422 (38%), Positives = 232/422 (54%), Gaps = 3/422 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + L ++ +G+ TP+QA +P L GKD+ QA+TG+GKTAAFGL Sbjct: 1 MTTFRELG-LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL ++D Q +V+ PTRELA QV EL ++ + +IL + GGQ Q +L+ Sbjct: 60 LLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PHIIV TPGR+LDH+ + T+ L + T+V+DEAD ML+MGF + I+ ++ P + QT Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P+ I I+ R +P I++ + + P I+Q + E K K +L RLL + Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + +ALN G +A +HGDL Q R L +F GS VLVATD Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V NF++ DPE +VHRIGRT RAG G+A+ F P E+ + I Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + K++ P + + + + + A D + A Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418 Query: 420 VH 421 + Sbjct: 419 LK 420 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 157/447 (35%), Positives = 241/447 (53%), Gaps = 6/447 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS L L L ++N+LG+ + +QA A+P + G D+ QA+TG+GKTAAFG G++ Sbjct: 5 KFSNLG-LKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGII 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 I A++L PTRELA QV EL+RL+++ + IL + GG P Q +L+ Sbjct: 64 NHISKKS-GLSAIILAPTRELAIQVNDELKRLSKY-DDLTILPVYGGDPITNQIRALKRN 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +I+V TPGR+LDH+++GT+ LD + LV+DEAD ML+MGF D ++D+I+ P+ RQTLL Sbjct: 122 VNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLL 181 Query: 183 FSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P+ I ++ R + D I I T + I Q F+E S K + L R+L Sbjct: 182 FSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDT 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 PSS ++FC TKK + + + G +HGD+ Q R +TL +F GS LVATDV Sbjct: 242 PSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDV 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D++ + V+N++L D E +VHRIGRT RA G+A S +P+E I + Sbjct: 302 AARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSVT 361 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + ++ + P + I +++ + + A D +I + Sbjct: 362 KSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSKFIPVATELTQKYDSVEIIAALI 421 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIK 447 + + + + I+ Sbjct: 422 KNKFN-DDLLETYTSDVLEAPKSEDIR 447 Score = 49.1 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Query: 356 ISDMLQIKLNWQTPPAN--SSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I+ +++ K N + ++E L + G++ + P ++ + + + Sbjct: 417 IAALIKNKFNDDLLETYTSDVLEAPKSEDIRLFLSIGRRDGINPKTLVNFIKDTARIRAS 476 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 IG I + +V + V K + G K+ + + + Sbjct: 477 SIGDIDILENFSFVNISPDVKDKVLDKCIGVKLNKRKVNIEVA 519 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 166/482 (34%), Positives = 248/482 (51%), Gaps = 27/482 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L L L L ++GY +P+Q A+P +LAG D+ QA+TGSGKTAAFGL Sbjct: 1 MTTFADLG-LSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++ +D S QALVL PTREL QV LR ++ + GG P Q+ L+ Sbjct: 60 LMEYVDPSDRDVQALVLTPTRELCIQVTQALRSYGA-RKGIDVVAVFGGAPIRSQQAQLR 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I+V T GR+ D + + ++ L +V+DEAD MLD+GF + ++ ++ P SRQT Sbjct: 119 AGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P I +S R +P+ +++ + + +EQ E S + K +L +L Sbjct: 179 ALFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P +VF TK C + L + G + +LHGD+ Q RD ++ F +G +LVATD Sbjct: 239 KPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI S+ VVNF++ P+V+VHRIGRT R G SG AI+F ++ + I Sbjct: 299 VAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIERH 358 Query: 360 LQIKL------------------------NWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 + + P N A + L + GG + Sbjct: 359 TRTPMAPWTAGARVAALRVEVKPKRHESKPHDAAPTNGDRAATDGARTRLVVAGGLAQGI 418 Query: 396 RPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 P D++ A+T GLDG + I V ++ V A A + +Q++G + G R+ Sbjct: 419 EPKDLIHAITSAAGLDGESVRNIRVLEQFAFLDVPAADAARVVEQVEGTDVDGHRLRLEP 478 Query: 456 LK 457 ++ Sbjct: 479 VR 480 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 152/458 (33%), Positives = 245/458 (53%), Gaps = 21/458 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ N L L + E+G+ +P+Q A+P +L +D+ QA+TG+GKTA+FG+ Sbjct: 2 IENFNDFN-LSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIP 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++++ + TQA+VLCPTREL+ QVA E+ +LA++ ++ + GGQP Q SL+ Sbjct: 61 IVEKVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKY-KGVTVVPIYGGQPIERQIRSLK 119 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IV TPGR++DH+++ T+ + + T V+DEAD M DMGF + I+ +I F P RQT Sbjct: 120 MGVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQT 179 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 FSAT + + R Q +P I++ + +P + Q ++ K+ +L R+L + Sbjct: 180 TFFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQ 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P VVFCNTKK + L G A LHGDL+Q RD + +F N + +LVATD Sbjct: 240 NPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+D+ ++LV+N+++ D E +VHRIGRTARAG G AISF +P E + I Sbjct: 300 VAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQKY 359 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + K+ + P + E D+ + + ++ I Sbjct: 360 TKTKIEKRDMPTLKDLIKRHEERFM-------------EDIKEEINKNEHTKELNLINIL 406 Query: 420 VHPAHVYVAVRQAVAHKAWKQL-QGGKIKGKTCRVRLL 456 + + + + A K + K+ + + Sbjct: 407 MSEDYSPIDI----AACLLKHYNENNKLNNHEELIDVD 440 Score = 52.6 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 E + I+ G + + ++ AL D + DIG I + +V + + A Sbjct: 465 EKNSGRIYINIGSRKGVSQRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNALKDAV 524 Query: 439 KQLQGGKIKGKTCRVRLL 456 L IKG V L Sbjct: 525 NNLNNAHIKGFKVLVELA 542 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 127/390 (32%), Positives = 196/390 (50%), Gaps = 13/390 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F P L + +LG+ TP+Q A P ++G+D+ + TGSGKT ++ L Sbjct: 121 VTTFEEAG-FPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLP 179 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A LVL PTRELA Q+ E + + + + GG P G Q Sbjct: 180 AIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKS-SRIRNTCVYGGVPRGPQ 238 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L I +ATPGRLLD L +L + LV+DEADRMLDMGF I ++ Sbjct: 239 IRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQT++FSATWP+ + ++ D + + + S D A I+Q + K L Sbjct: 299 PDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLG 358 Query: 234 RLLSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 + + + + ++F TK+ + L + G AL++HGD Q +RD L F G Sbjct: 359 KDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTG 418 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + ++VATDVA+RG+D+K + V N++ + E +VHRIGRT RAG G A ++ + A Sbjct: 419 KSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNA 478 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATLEA 380 ++A + +L + P +A + Sbjct: 479 KQARELVSIL-SEAKQDIDPKLEEMARYSS 507 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 582 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 167/520 (32%), Positives = 247/520 (47%), Gaps = 66/520 (12%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS + L L ++ ++G++ TP+Q+ A+P IL G+D+ QA TG+GKTAAFG+ LL Sbjct: 4 NFSEMG-LSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLL 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + +D S + QAL+LCPTRELA QVA E+ LA ++L + GGQ Q ++L+ Sbjct: 63 EMLDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKKG 122 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DH+++ T+ LD +V+DEAD ML+MGF + I ++ RQ + Sbjct: 123 IQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQITM 182 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+AI A++ Q++P I++ + + + +EQ + E K L +L+ + P Sbjct: 183 FSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNP 242 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTKK + L G LHGD+ Q R++ + F N S +VLVATDVA Sbjct: 243 QLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVA 302 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ +E V N+++ D E +VHRIGRT RAG +G A SF R I + Sbjct: 303 ARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLREIQRYTK 362 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--------------------------- 394 IK+ P+ + T E I+ + Sbjct: 363 IKIKSLNVPSEKDVNTKRMESFLGEINDILEQGNLSDYVPAVEELIARGYTSMEIAAALI 422 Query: 395 -----MRPGDVLGALTGDIGLDGADI--------------------------------GK 417 R A + D I G Sbjct: 423 KMNVSKRAYSQNEAGAKNNNRDREMIKLFVSAGSKHNIRVRDIVGAITGEAGIPGDRIGS 482 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 I + H YV V + A L KIKG L + Sbjct: 483 IELLSKHSYVEVERRYAELVIDSLNRCKIKGNKIVAELAR 522 >UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacteriaceae RepID=A1JLM2_YERE8 Length = 460 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 313/458 (68%), Positives = 360/458 (78%), Gaps = 3/458 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T+FS+L LP QL+NLNELGY MTPVQAAALPAIL G+DVR +AKTGSGKTAAFG+GL Sbjct: 4 TSFSSL-TLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGL 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +I F TQALVLCPTRELADQV+ ELRRLARF N KILTLCGGQP G Q DSL H Sbjct: 63 LDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 APHI+V TPGR+ +HL+K T+ LD L LV+DEADRMLDMGF+DAIDDVI + P RQTL Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 LFSAT+P I IS RVQR P+ +E+D D P IEQ F+ET+ + ++PLL +LS +QP Sbjct: 183 LFSATYPAGIEQISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQP 242 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +SCVVFCNTKKDCQ+V +AL G S L+LHGDLEQRDRDQ LVRFAN S RVLVATDVA Sbjct: 243 ASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVA 302 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDIK LELVVNFELA+DPEVHVHRIGRT RAG SGLA+S C P+E RA+ I D LQ Sbjct: 303 ARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQ 362 Query: 362 IKLNWQTPPANSSIAT--LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 +KL W S A LE EM TLCIDGG+KAK+RP D+LGALTG+ GL AD+GKI Sbjct: 363 MKLKWTPAEQVSRSANTLLEPEMVTLCIDGGRKAKIRPSDILGALTGEAGLTAADVGKID 422 Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + P H YVA+R+A A +A +QLQ GKIKGK C+ RLLK Sbjct: 423 MFPVHAYVAIRKASAKRALQQLQQGKIKGKNCKARLLK 460 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 213/413 (51%), Gaps = 17/413 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F LP L +N G+ TP+Q P L+G+D+ A+TGSGKT AF + Sbjct: 211 IQTFDEA-CLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIP 269 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A L+L PTRELA Q+ E R R + GG G Q Sbjct: 270 AVIHINAQPYLQKGDGPIVLILAPTRELALQIKAECDRFGRS-SRITNTCVYGGTQRGPQ 328 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +LQ+ I +ATPGRL+D L+ GT +L + LVMDEADRMLDMGF + ++ Sbjct: 329 ARALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIR 388 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRD-PLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQ 233 RQTL++SATWP+ + ++ + + P+ + + + A I+Q + K L Sbjct: 389 PDRQTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLL 448 Query: 234 RLLSLHQ-------PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR 286 L+ + ++FC+TK+ + L G ALS+HGD +Q +RD L + Sbjct: 449 ALMQAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQ 508 Query: 287 FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 F G + +++ATDVA+RGLD+K ++ V+N++ E +VHRIGRT RAG SG+A SF + Sbjct: 509 FKTGRSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFS 568 Query: 347 PEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 P++ + A + + L+ + N P A +IA + GK G Sbjct: 569 PDKGKLARQLVNCLR-EANQSVPEALETIAFANDRSNSGGKGRGKGNYGGKGR 620 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 149/417 (35%), Positives = 226/417 (54%), Gaps = 10/417 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS L L+ + + GY TPVQ ++P IL G+D+ A+TG+GKTAAF L +L Sbjct: 63 KFSEFG-LKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVL 121 Query: 63 QQI-DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ + +ALVL PTRELA Q+ ++ R+L + + + L GG G Q +L+ Sbjct: 122 HKLTLLKRPRVRALVLTPTRELAIQIFDNFKKYGRYL-HLRTVCLYGGAKRGPQIGALRR 180 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+VATPGRLLD + + V L ++ LV+DEADRMLDMGF + ++ P+ RQTL Sbjct: 181 GADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTL 240 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 +FSAT + + ++ R+ +DP+ +++ +A +EQ+ +S + K ++ LL+ Sbjct: 241 MFSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEA 300 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VF TK + L G ++++HGD Q R L RF +G RV+VATDV Sbjct: 301 VESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDV 360 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI L V N+++ + ++HRIGRT RAG SG+AI+ C E + ++L Sbjct: 361 AARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEELL 420 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 + + P + +L E GG+ R G G + G G G Sbjct: 421 EKPI-----PELQTQWSLPLERKARKGKGGRTRHGRSGYRSGGQ-KNAGKSGHKTGS 471 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 149/449 (33%), Positives = 236/449 (52%), Gaps = 8/449 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN L P + + GY T +Q+A +P ++ G DV Q++TG+GKTAAF + ++ Sbjct: 2 KFNELN-LSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60 Query: 63 QQID-ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + ++ + QAL+L PTRELA QV E+R+ ++ + + + GGQ Q L+ Sbjct: 61 EMLEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELKK 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR+LDH+++ T+ D LV+DEAD ML+MGF + I+ VI P RQT+ Sbjct: 121 GADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTV 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I I+ + Q +P+ I+ T P IEQ +Y + K +L +L+S+ Sbjct: 181 LFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLISMQN 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P ++FCNTKK + L G A +LHGD++Q R + F G +LVATDV Sbjct: 241 PHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ S+++V N++L + E +VHRIGRT RAG GLA++ + + Sbjct: 301 AARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLERTT 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGK-KAKMRPGDVLGALTGDIGLDGADIGKIA 419 + KL + P+ + + + ++ + P + D G ++ Sbjct: 361 RSKLTQKPLPSLEEVRKIRLDFLREDLEHRMTRDVPEPLAAIIDTMKDDGYSYREMALAL 420 Query: 420 VHPAHVY----VAVRQAVAHKAWKQLQGG 444 + + + A A A + G Sbjct: 421 AYQIAGHEMFDESAWNASARPALTVTEKG 449 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 169/419 (40%), Positives = 246/419 (58%), Gaps = 6/419 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F LN+ P + ++G+ +P+Q+ A+P ILA KDV QA+TG+GKTAAFG+ LL Sbjct: 5 KFKDLNI-SPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLL 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + ID+ QA++LCPTRELA QVA ELR+L+ +LP +L + GGQP Q +LQ Sbjct: 64 ENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKG 123 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 II+ TPGR++DH+ +GT+SL+ + T+++DEAD MLDMGF + I+ ++ P RQ LL Sbjct: 124 VQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLL 183 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I ++ R Q +P +++ + P +EQ+++E K+ LL RLL LH Sbjct: 184 FSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDF 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK+ + L G A LHGDL Q RD+ + +F G+ +LVATDVA Sbjct: 244 DLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ +E V NF++ D E +VHRIGRT RAG +G A SF + E + I + Sbjct: 304 ARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAK 363 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 K+ PA S + ++ + + K K+ D+ L D I + Sbjct: 364 TKIEQAPIPALSDVEEVKKDNFIEEL----KEKINTEDISKETYIIEKLVEEDYNSIDI 418 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 205/460 (44%), Positives = 289/460 (62%), Gaps = 7/460 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L L P L L EL + T TP+QA ++P +L G+D+ QA+TGSGKTAAF L LLQ Sbjct: 3 FSAL-ALSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQ 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++ + QALVLCPTREL QVAGE+RRL R LP ++L L GGQP Q ++L+ Sbjct: 62 KVQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+ V TPGR++D L + + L+T+V+DEADRMLDMGF + ++ ++ P RQT+LF Sbjct: 122 HLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+P I A+S QR P+ + +++ A P I+Q Y+ K LL R+L +QP+S Sbjct: 182 SATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQVRYDCEPGDKQALLLRILRHYQPAS 241 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 +VFCN K + +L+ G S L GDLEQ +RD+ + +F N S RVL+ATDVA R Sbjct: 242 AIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGR 301 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 G+D+++L+ V+NF+L E +VHRIGRT RAG +GLA+S P + ++ + I +K Sbjct: 302 GIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDDIQLATGVK 361 Query: 364 LNWQTPPANSSIATLEA-----EMATLCIDGGKKAKMRPGDVLGALTGDI-GLDGADIGK 417 L + S A TL I G+K KMRPGD+LGALTG+ GL+ D+GK Sbjct: 362 LERGDVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGALTGEAGGLEATDVGK 421 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 I + YVAV + V+ A+++L G+IKG+ ++ +K Sbjct: 422 IEIQDHVAYVAVARRVSRVAFQRLSEGRIKGRRYKIERVK 461 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 579 bits (1493), Expect = e-164, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 191/368 (51%), Gaps = 12/368 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F P + + + G+ T +QA P ++G+D+ A+TGSGKT A+ L + Sbjct: 159 FEE-GGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVV 217 Query: 64 QIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 I+ ALVL PTRELA Q+ + + + GG P G Q Sbjct: 218 HINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNT-HVRNTCIFGGAPKGQQARD 276 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I++ATPGRL+D L++GT SL LV+DEADRMLDMGF I +++ R Sbjct: 277 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 336 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEID--STDALPPIEQQFYETSSKGKIPLLQRLL 236 Q L++SATWP+ + ++ + + + I S A I Q K+ L +LL Sbjct: 337 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLL 396 Query: 237 SL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 + + ++F TKK + ++ G A ++HGD Q++RD L F NG Sbjct: 397 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 456 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATDVAARGLD+ ++ V+N++ + E +VHRIGRT R+ N+G A + A +A Sbjct: 457 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 516 Query: 354 NIISDMLQ 361 N + +L+ Sbjct: 517 NDLIQVLR 524 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 147/445 (33%), Positives = 234/445 (52%), Gaps = 6/445 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M +F L L + L + G+ TP+Q A+P ++ G +DV QA+TG+GKTAAFG+ Sbjct: 1 MESFKNLG-LSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ ID S TQAL+L PTRELA QVA E+ + + + + GGQ Q L Sbjct: 60 PILETIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIREL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR+LDH+ + T+ L+ ++ +V+DEAD ML+MGF D ++++++ ++ Sbjct: 119 KRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIE-QQFYETSSKGKIPLLQRLLSL 238 LLFSAT P++I ++ R+ I++ + Q +YE S+ K LL R++ + Sbjct: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDV 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC TK D + L E G +A LHGD+ Q R++TL +F VLVAT Sbjct: 239 EKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+DI L VVN+++ +PE +VHRIGRT RAG G A++F P E ++ I Sbjct: 299 DVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + ++ + P I + I + + + ++ D + Sbjct: 359 IANTEIRKEEVPDVKDIIGAKKRKIVSGIKELL--ESGKYNDCEKMAAELLEDADPQEVL 416 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQG 443 + + +K + Sbjct: 417 SAVLKYALKDELSESNYKRIGKPAN 441 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 150/451 (33%), Positives = 229/451 (50%), Gaps = 5/451 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L+ L + GY TP+QA +P +L G+DV Q++TG+GKTAAF L +L Sbjct: 306 FRDLD-LRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILS 364 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++D + Q LVL PTRELA QVA + L ++ + GGQ + Q L+ Sbjct: 365 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 424 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGR++DH+++GT+ L +L+ LV+DEAD ML+MGF + + V+ +P RQ LF Sbjct: 425 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALF 484 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ I I+ DP I I S + Q+ S + KI L R+L + + Sbjct: 485 SATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETD 544 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VF TK +V + L++ G SA++L+GD+ Q+ R++T+ + G VLVATDVAA Sbjct: 545 GVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAA 604 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + V NF+L D E +VHRIGRT RAG SG AI F + ++ I + + Sbjct: 605 RGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTTKQ 664 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR--PGDVLGALTGDIGLDGADIGKIAV 420 + P + I I + D++ + G I Sbjct: 665 PIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAALA 724 Query: 421 HPAHV-YVAVRQAVAHKAWKQLQGGKIKGKT 450 + + + K ++ +G+ Sbjct: 725 EMSQNGRPFLLKERPKKQRERSDRDNSRGRD 755 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 42/87 (48%) Query: 370 PANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAV 429 P + ++ M +D G + ++PG+++GA+ + G+DG IG I + +H + + Sbjct: 777 PKGRPLTPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDL 836 Query: 430 RQAVAHKAWKQLQGGKIKGKTCRVRLL 456 + + ++ L+ + GK + Sbjct: 837 PEGMPSDIYQTLRKTWVAGKRLNLEEA 863 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 146/401 (36%), Positives = 202/401 (50%), Gaps = 12/401 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS + P ++ +N G+ TP+QA + P L+G+DV A+TGSGKT A+ L + Sbjct: 80 SFSEAS-FPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPSI 138 Query: 63 QQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I AL+LCPTRELA QV R L + GG P G Q Sbjct: 139 IHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGR-LARINCACIYGGSPKGPQLR 197 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L I VATPGRLLD L+ +L+ + LV+DEADRMLDMGF I +I Sbjct: 198 ELSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCP 257 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQT+++SATWP+ I ++ RD + I I S+D I+Q + K L +L Sbjct: 258 RQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKL 317 Query: 236 LS---LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 LS +VF TKK + L G L +HGD Q +RD+ L F +G Sbjct: 318 LSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRI 377 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 VL+ATDVAARGLDI ++LV+N++ + E +VHRIGRTAR+G +G A +F ++ Sbjct: 378 PVLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASNIRQ 437 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + + +L+ P AEMA + Sbjct: 438 SPNLIALLREANQPINPDLIQLGDAARAEMAQKHRGKMRGR 478 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 156/451 (34%), Positives = 251/451 (55%), Gaps = 7/451 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ L+ L L L+E+GY T +P+QA +P +LAG D+ +A+TG+GKTAAF L Sbjct: 43 IESFAQLD-LRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALP 101 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LL ++D ++ Q LVL PTRELA QVA +R A+ LP +L + GGQ +Q L Sbjct: 102 LLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLA 161 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H+IV TPGR++DH+++ +++LD+L TLV+DEAD ML MGF D ++ +++ PA RQT Sbjct: 162 RGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQT 221 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLS-L 238 LFSAT P+AI ++ R R+P ++I ST + Q++ + S K+ L R+L Sbjct: 222 ALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVE 281 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++F TK + D L G SA +L+GD+ Q+ R++ + + G ++VAT Sbjct: 282 EDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVAT 341 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ + V+N+++ +D E +VHRIGRT RAG +G AI F AP E + +I Sbjct: 342 DVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIER 401 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIG 416 + + P+ ++A + +++ DV+ + + DI Sbjct: 402 ATRQPIEALQLPSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAELHDIA 461 Query: 417 KIAVH--PAHVYVAVRQAVAHKAWKQLQGGK 445 + + ++ + + + Sbjct: 462 AALAFLAQRERPLQLPESKGPDIARLPEPRR 492 Score = 61.4 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 364 LNWQTPPANSSIATLEAEMA-----TLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 I E + I+ G+ + P D++GA+ + G++ IG+I Sbjct: 496 AERAPRENRDKILERRREFSEGNLQRYRIEVGRNQQATPKDIVGAIANEAGIESRYIGQI 555 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 ++ + V + A+ H L+ +++ +R L Sbjct: 556 NLYEDYSTVELPSALPHDVLDILRRVRVRQHQLNIRPL 593 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 158/429 (36%), Positives = 228/429 (53%), Gaps = 7/429 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F+ L L L LN+LGY +P+QA +P +L G+DV A+TGSGKTAAF L L Sbjct: 6 TTFADLG-LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ +D L Q LVL PTRELA QVA + ++ + ++ L GGQ + +Q +L+ Sbjct: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P I+V TPGRLLDHL++GT+ L L+ LV+DEAD ML MGF + ++ ++ P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT PEAI I+ R ++P + I S P I Q ++ K L R L Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + ++F TK V +AL G ++ +L+GD+ Q R+QTL R +G +L+ATDV Sbjct: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + LVVN+++ D E +VHRIGRT RAG +G A+ F E + I + Sbjct: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV-----LGALTGDIGLDGADI 415 ++ + P + E + ++ + LD + Sbjct: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 Query: 416 GKIAVHPAH 424 + A Sbjct: 425 AAALLKMAQ 433 Score = 49.1 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%) Query: 381 EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQ 440 +M I+ G+ + ++GA+ + + IG I + +H + + + + + + Sbjct: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 Query: 441 LQGGKIKGKTCRVRLL 456 +I K ++LL Sbjct: 545 FTRTRILNKPMNMQLL 560 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 158/424 (37%), Positives = 235/424 (55%), Gaps = 4/424 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++ F+ L LP L L ++GY T +P+QAA +P +LAG+DV QA+TG+GKTAAF L Sbjct: 6 ISPFAELG-LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALP 64 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L +ID + TQALVL PTRELA QVA R A LP +L + GGQ + Q SL+ Sbjct: 65 ILAKIDCNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLK 124 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H++V TPGR++DHL++GT+ LD L +V+DEAD ML MGF D ++ +++ P RQ Sbjct: 125 RGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQV 184 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI-EQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P AI I+ RDP I I + +Q+++ S K+ L R+L + Sbjct: 185 ALFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVE 244 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++F TK+ + + + L G +A +L+GD+ Q R++ + R +G +LVATD Sbjct: 245 PFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATD 304 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ + VVN+++ D E +VHRIGRT RAG SG AI F P E I Sbjct: 305 VAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERA 364 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGK 417 + + P+ ++ I ++ + ++ + + +I Sbjct: 365 TRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAIEIAA 424 Query: 418 IAVH 421 Sbjct: 425 ALAR 428 Score = 60.3 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%) Query: 374 SIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAV 433 + T ++ G+ + +++GA+ + GL+ IG IA+ H +V + + + Sbjct: 538 PHTASDVRFETYRVEVGRDHGVEVRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGM 597 Query: 434 AHKAWKQLQGGKIKGKTCRVRLL 456 ++ LQ + G+ ++ Sbjct: 598 PKDVFRTLQKTWVSGRQLQLTKA 620 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 154/419 (36%), Positives = 226/419 (53%), Gaps = 11/419 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L ++ P L + + GY TP+Q A+P ++AGKDV A+TG+GKTA F L LL Sbjct: 2 SFADLGLI-PELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60 Query: 63 QQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 +I + QT+AL+L PTRELA QV ++ ++ LP + + + GG Sbjct: 61 HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLP-LRSVCVYGGVDIRP 119 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q+ L+ I++ATPGRLLDHL++ +++L + LV+DEADRMLDMGF I ++ Sbjct: 120 QQAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALL 179 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQ 233 P RQ+LLFSAT+ + I ++ ++ ++P IE+ + + I + SS K LL Sbjct: 180 PKQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLA 239 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 LL + +VF +TK C + L G SA ++HGD Q+ R TL F +G R Sbjct: 240 HLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLR 299 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATDVAARGLDI L V+NFEL E +VHRIGRT RAG+ G AIS + EE Sbjct: 300 VLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWL 359 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDG 412 + I ++++++ + P + A + G + Sbjct: 360 SEIEKLIKLQIPQERVPGFDPDPDFHEAGSRGHRGRRPAAAAADTEAQAPAARSGGRER 418 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 13/388 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F P L + G+ T +Q P L+G+D+ A TGSGKT ++ L Sbjct: 112 ITTFDEAG-FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLP 170 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A LVL PTRELA Q+ E + + + GG P Q Sbjct: 171 GIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFG-HSSRIRNTCVYGGVPKSQQ 229 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L I++ATPGRL+D L+ G +L + LV+DEADRMLDMGF I ++ Sbjct: 230 IRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQTL++SATWP+ + ++ DP+ +++ S + A I Q S K L Sbjct: 290 PDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLN 349 Query: 234 RLLS---LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 + L ++F +TK+ C + L E G AL++HGD +QR+RD L F NG Sbjct: 350 KYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNG 409 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + ++VATDVAARG+D+K + V+N+++ + E +VHRIGRT RAG +G AISF + Sbjct: 410 RSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATL 378 + +++ + N PP Sbjct: 470 GLGAKLISIMR-EANQNIPPELLKYDRR 496 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 146/426 (34%), Positives = 222/426 (52%), Gaps = 10/426 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L L L E+GY +P+Q +P +L G DV A+TG+GKTAAF L L Sbjct: 63 FTDLG-LDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALS 121 Query: 64 Q------IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 + I+ TQ LVL PTRELA QVA A + + +L + GG P+G Q Sbjct: 122 RMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLA 181 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ ++V TPGR++DHL+KG++ L L LV+DEAD ML MGF++ ++ ++ P S Sbjct: 182 GLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDS 241 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLL 236 +Q LFSAT P +I I+ + DP + + + I Q++ + K+ + R+L Sbjct: 242 KQVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVL 301 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + +VF TKK+ + V D L G +A +++GD+ Q+ R++T+ +G +LV Sbjct: 302 EVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILV 361 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARGLD++ + LVVN+++ D E +VHRIGRT RAG G AI F P E I Sbjct: 362 ATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQI 421 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGAD 414 + K+ P ++ + I +++ ++ + D Sbjct: 422 EKATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYENEHDTTAED 481 Query: 415 IGKIAV 420 I Sbjct: 482 IAAALA 487 Score = 56.4 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 37/77 (48%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 M ++ G+ +++ G ++GAL + G+ G+ IG I + V + + + + Sbjct: 530 EGMVNYKLNVGRSSRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFD 589 Query: 440 QLQGGKIKGKTCRVRLL 456 +L+ KI G+ +R Sbjct: 590 RLRDTKIAGEFINIRKD 606 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 144/425 (33%), Positives = 222/425 (52%), Gaps = 8/425 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + L + ++G+ + +QA ++P L G D+ QA+TG+GKTAAFG ++ Sbjct: 5 KFDDLG-LKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAII 63 Query: 63 QQID--ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 D +AL+L PTRELA QV EL RL + +L + GGQP Q +L+ Sbjct: 64 NNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK-LSVLPIYGGQPIDRQIRALK 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 + I+V TPGR+LD +++ ++ L+ + LV+DEAD ML+MGF D ++++++ RQT Sbjct: 123 NGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQT 182 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P I ++ + D I I + + IEQ ++E + + L R+L Sbjct: 183 LLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDF 242 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P++ ++FC TKK V + + G +HGD+ Q R QTL +F GS LVAT Sbjct: 243 DEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVAT 302 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D++S+ V+N++L D E +VHRIGRT RA G+A S P+E I Sbjct: 303 DVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQK 362 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIG 416 + K+ + P I + + + + A D D+ Sbjct: 363 HTKSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQLDEDYSLVDVA 422 Query: 417 KIAVH 421 + Sbjct: 423 AALLK 427 Score = 44.9 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 30/83 (36%) Query: 375 IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVA 434 I + L + G++ + P ++ L + +G I + + V Sbjct: 443 IEAPVMDETRLFMSVGRRDGITPKSLVNFLKETARISPKQVGDIDIKENFCFANVDADAV 502 Query: 435 HKAWKQLQGGKIKGKTCRVRLLK 457 + K+ G K+ +T + + K Sbjct: 503 NNIMKKSMGKKLNKRTVNIEVAK 525 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 161/456 (35%), Positives = 252/456 (55%), Gaps = 15/456 (3%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F ++ L L ++E G+ TP+Q ++P +AG D+ QA+TG+GKTA+FG+ + Sbjct: 4 ENFYSMG-LKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPI 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L ++ QALVLCPTRELA QV E+ L+R + ++L + GGQ +Q SL+ Sbjct: 63 LNRVIKGE-GLQALVLCPTRELAVQVTEEISSLSRRM-RIQVLAIYGGQSIELQLRSLRR 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P IIV TPGRL+DH+ +GT+SL L +V+DEAD MLDMGF I ++ P RQT Sbjct: 121 NPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTF 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ + + + + P I I+S + +P IEQ +Y+ +S+ KI L R++ Q Sbjct: 181 LFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQ 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P ++FC TK++ + L G +A +LHGD+ QR+RD + F G+ ++LVATD+ Sbjct: 241 PPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDL 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI+ + V NF++ D + ++HR+GRT RAG SG+AI+ P + + +I Sbjct: 301 AARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHT 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGD---IGLDGADIGK 417 ++ P + ++ + ++A PGDV +L G + Sbjct: 361 GKRIERALLPTLAEAVEKRQDLLLERV---RQASAEPGDVCLSLAEKLMQQGDPEKMLAA 417 Query: 418 IAVH-----PAHVYVAVRQAVAHKAWKQLQGGKIKG 448 P + ++ A +L G+++G Sbjct: 418 ALKLLIDEEPDFEMAELPESDDSMAHLELPAGRLQG 453 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 157/460 (34%), Positives = 237/460 (51%), Gaps = 14/460 (3%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + FS + ++ P L L++LGY T T +QA +P ILAG+D+ QA+TG+GKTAAF L L Sbjct: 19 SGFSEMGLIKP-VLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPL 77 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +ID L + Q LVL PTRELA QVA + A + +L + GGQ + Q + L+ Sbjct: 78 LSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR 137 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H+IV TPGRL+D +++G + L + TLV+DEAD ML MGF D ++ ++ P RQ Sbjct: 138 GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVA 197 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I I+ + DP + I T I Q+F+ K+ L R+L Sbjct: 198 LFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAET 257 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK + + L G +A++L+GD+ Q+ R++T+ RF G +LVATDV Sbjct: 258 FDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDV 317 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V+N+++ E +VHRIGRT RAG +G AI F +P E +I Sbjct: 318 AARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTT 377 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK------------MRPGDVLGALTGDI 408 + ++ P+ +I I +K + DV Sbjct: 378 RQQIEMMKLPSTEAINDKRIADFNQSITDTLASKELDLYLELMEQYRQEHDVPALDIAAA 437 Query: 409 GLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 K + + V+V + + + ++ Sbjct: 438 LALMLQGEKPLLLSSPKKVSVVSEKPSRTEDKFKDKPLRK 477 Score = 59.1 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 M I+ G +P D++GA+ + LDG IG I + H +V + + ++ Sbjct: 537 KGMERFRIEVGDVHGAKPKDIVGAIANEAELDGKFIGAITIEHDHSFVDLPIGMPATIFE 596 Query: 440 QLQGGKIKGKTCRVRL 455 L+ ++ G+ ++ Sbjct: 597 LLKKVRVAGQQLKISR 612 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 193/399 (48%), Gaps = 13/399 (3%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F N P + L + + TP+Q P L+G+D+ A+TGSGKT A+ L + Sbjct: 94 FHHAN-FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 152 Query: 64 QIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 I+ LVL PTRELA QV + K + GG P G Q Sbjct: 153 HINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRD 211 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I +ATPGRL+D L+ G +L LV+DEADRMLDMGF I ++ R Sbjct: 212 LERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLL 236 QTL++SATWP+ + ++ RD I + + + A I Q K L +L+ Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 331 Query: 237 SL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 + + ++F TK+ C + + G A+ +HGD Q +RD L F +G A Sbjct: 332 EEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +L+ATDVA+RGLD++ ++ V+N++ E +VHRIGRTAR+ N G A +F P ++A Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 + +L+ + N P + + Sbjct: 452 RELIKVLE-EANQAINPKLMQLVDHRGGGGGGGGRSRYR 489 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 572 bits (1476), Expect = e-162, Method: Composition-based stats. Identities = 157/418 (37%), Positives = 225/418 (53%), Gaps = 7/418 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F + L L +NE G+ +PVQA A+P +L G D+ QA+TG+GKTAAFGL Sbjct: 1 MQTFESFG-LHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + IDA+ + Q LV+ PTRELA QV+ EL L RF K +T+ GG + Q ++ Sbjct: 60 TMSMIDANQNRVQLLVITPTRELATQVSDELYSLGRFC-GIKTVTIYGGSSYSRQIGLIE 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IVATPGR+LD L+ G + A +V+DEAD MLDMGF + I+++ + P RQT Sbjct: 119 KGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT PE I ++ ++ +P + I D IEQ +Y + + + RLL Sbjct: 179 LLFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDA 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P +VFC TKK+ + L VG +A LHGD+EQ R+ + F + +LVAT Sbjct: 239 LEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGL++ + V N+ + +DPE +VHRIGRT RAG G AI+ P E I Sbjct: 299 DVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIG 416 + K+ + P + + D K A++ + +D + I Sbjct: 359 KVGSKIEHRIVPNLRDVKENK---LIKIADDIKNAELNENASKLLAILEEEMDMSQIA 413 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 160/462 (34%), Positives = 239/462 (51%), Gaps = 12/462 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F++L LP NL LGY T TP+QA +P +L G+DV A+TG+GKTAAF L + Sbjct: 9 SRFNSLG-LPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPI 67 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L ID + QALVLCPTRELA QVA R R + +IL++ GG Q SL+ Sbjct: 68 LANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLRE 127 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HI+VATPGRLLDH+++ ++ L +N +V+DEAD ML MGF D +D ++ P R+ Sbjct: 128 GTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVA 187 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ + I+ + +P I + + IEQ ++ K+ L+RLL+ Sbjct: 188 LFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFED 247 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF T++ + + L + G A L+GD++Q+ R +T+ +G+ VLVATDV Sbjct: 248 TEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDV 307 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V+N+++ +D E +VHRIGRT RAG G AI F P E + I + Sbjct: 308 AARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLT 367 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKI 418 + + P+ +I E I M+ +++ L D + Sbjct: 368 RQSIPEIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIAVALA 427 Query: 419 AVH--------PAHVYVAVRQAVAHKAWKQLQGGKIKGKTCR 452 + P H + + + K K R Sbjct: 428 GMLHSPGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERR 469 Score = 57.6 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Query: 346 APEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALT 405 + E A L + P M ++ G+K ++PG+++GA+ Sbjct: 479 SESETPSAPKNEKHLGEARPLRDHPDV--------PMERFRVEVGRKHGVKPGELMGAIA 530 Query: 406 GDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 + G++G IG I + + + + + K L+ ++KG Sbjct: 531 NEAGIEGQYIGMINILEECSTIDLPEGIPKSILKHLKKTRVKG 573 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 149/389 (38%), Positives = 214/389 (55%), Gaps = 9/389 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F +L L P L + E GY TP+Q A+PA+L G+D+ A+TG+GKTA F L LL Sbjct: 2 SFDSLG-LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 63 QQI------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 Q + +AL+L PTRELA Q+ +R +++L N + L + GG Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQM 119 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ ++VATPGRLLD + V LD + LV+DEADRMLDMGF I V+ PA Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRL 235 RQ LLFSAT+ + I A++ ++ +PL IE+ + + Q + K K LL + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + +VF TK + + LN+ G + ++HG+ Q R + L F +G RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARGLDI+ L VVN+EL PE +VHRIGRT RA +G A+S +E + Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMAT 384 I +L+ ++ P +++AE Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 221/426 (51%), Gaps = 11/426 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L PA L + E GY T TP+QA A+PA+LAG D+ A+TG+GKTAAF L +L Sbjct: 2 TFEELK-LAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60 Query: 63 QQIDASLF--------QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q++ +AL++ PTRELA QV +R ++L + + + GG G Sbjct: 61 QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYL-DLTSMVMFGGVGMGA 119 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q D L+ I+VATPGRLLDH +GT+ L + LV+DEADRMLDMGF I V+ Sbjct: 120 QIDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALV 179 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQ 233 P +Q+LLFSAT+ + I ++ + RDPL I++ + + I Q + K LL Sbjct: 180 PKHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLT 239 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 +++ H S +VF TK V + L + G A++LHG+ Q R Q L F +G+ R Sbjct: 240 HIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIR 299 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 LVATD+AARG+DI L VVN+E+ E +VHRIGRT RAGNSG A+S +E Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFM 359 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I + + P + AE + +P Sbjct: 360 QDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARSE 419 Query: 414 DIGKIA 419 + +I Sbjct: 420 MMQRIR 425 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 153/427 (35%), Positives = 233/427 (54%), Gaps = 4/427 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++ FST N A L ++ ++T +P+QA +P IL G+D A+TG+GKTAAF L Sbjct: 5 ISNFSTFN-FSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALP 63 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ + + TQAL+L PTRELA QVA + L+++ N I LCGGQ +G Q L+ Sbjct: 64 ILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+LDH+ KGT+ L+ L T ++DEAD ML MGF + ++ ++ P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P I I+ DP +IEI T + IEQ+F S K L R+L + Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +VF TK + V + L + G A+++HGD+ Q R++ + +F G+ +LVATD Sbjct: 244 DYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATD 303 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ + V+N+++ D E +VHRIGRT RAG SG+ I F P+E++ + I Sbjct: 304 VAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSIERH 363 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGK 417 + ++ P + I + I + ++ + + D+ Sbjct: 364 TRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVDVAA 423 Query: 418 IAVHPAH 424 H Sbjct: 424 ALALLLH 430 Score = 53.7 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 12/134 (8%) Query: 333 ARAGNSGLAI----------SFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIATLEAE 381 ARAG GL + SF + A+ + + ++ Sbjct: 453 ARAGEKGLDLRGRFKEDRKSSFADRKGARGSKKDFAKDFSNERKKFN-DGRKAVNQESVA 511 Query: 382 MATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQL 441 ID GK ++PG+++GA+ + GL I + +H H V + + + + K L Sbjct: 512 QDLFRIDVGKIHGVKPGNIVGAIANEAGLQSRYITGLKIHEDHSTVRLPKGMPKEVMKDL 571 Query: 442 QGGKIKGKTCRVRL 455 + G+ + L Sbjct: 572 TKAWVCGRQLNLTL 585 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 151/425 (35%), Positives = 232/425 (54%), Gaps = 4/425 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F++L LP L + E GY +P+Q ++P +L GKDV A+TG+GKTAAF L L Sbjct: 6 TGFASLG-LPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L + + + Q LVL PTRELA QVA + ++ N K+ ++ GG FG Q +L+ Sbjct: 65 LARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQ 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 P +V TPGR++DH+++GT+ L+ + +V+DEAD ML MGF D +D V+ P RQ Sbjct: 125 GPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIA 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I A++ + R+P I I S IEQ+++ K L R+ + Sbjct: 185 LFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSE 244 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK+ + V D + G +L+GD+ Q R++ + R G +LVATDV Sbjct: 245 FDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + VVN+++ +D E +VHRIGRT RAG SG AI F P E + + I + Sbjct: 305 AARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVT 364 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + K+ P + + + + + R ++ + +I + + I + Sbjct: 365 RKKIQQIELPTAKEVNAKRRDQF--KVRALEHIEGRDIEIFKKIASEILAEQPALDPIEL 422 Query: 421 HPAHV 425 A Sbjct: 423 AAAFA 427 Score = 68.4 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 357 SDMLQIKLNWQTPPANSSIATLE---AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 + P ++ + EM + G K ++PG+++GA+ + ++ Sbjct: 459 ERRNNSGREERKPIELEAMPLKDFPDVEMRRYRLAVGYKDGVKPGNIVGAIANEADIESK 518 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 IG I ++ V + + + L+ ++ G+ + LK Sbjct: 519 FIGHIEIYDTFASVDLPSGMPEETLTHLKKARVCGRPINIEPLK 562 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 569 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 151/402 (37%), Positives = 209/402 (51%), Gaps = 11/402 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L L + LN Y T +Q A+P +AG+D++ A+TG+GKTAAF L LL Sbjct: 2 SFEDLG-LAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60 Query: 63 QQIDASLFQ-------TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 ++ + Q +ALVL PTRELA Q+ +RR R LT+ GG Q Sbjct: 61 DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQ-NSLTIYGGVSQVPQ 119 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L +++ATPGRL D +Q+G ++L + V+DEADRMLDMGF I +I P Sbjct: 120 VKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLP 179 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQR 234 +QTLLFSAT P I ++ ++ DP+ I I+ A I Q Y +K K LL Sbjct: 180 QQKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLAS 239 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +L + + VVF TK C L + G ++HG+ Q R +TL F NG +V Sbjct: 240 VLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQV 299 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATDVAARGLD+ + V+N++L +PE +VHRIGRT RAG SG+AISFC E+ Sbjct: 300 LVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLLR 359 Query: 355 IISDMLQIKLNWQ-TPPANSSIATLEAEMATLCIDGGKKAKM 395 + +L K+ + P + K Sbjct: 360 DVQRILGKKIPVENEMPDGIPGLPANIDRDGGAKRAPWGNKK 401 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 147/438 (33%), Positives = 243/438 (55%), Gaps = 6/438 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L L P + + +GY TP+Q +P ++ GKD+ QA+TG+GKTAAFG+ ++ Sbjct: 3 FKDLG-LSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIE 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +D S+ QTQ+L+LCPTRELA QV EL++L++F ++L + GG+ Q L+ Sbjct: 62 HVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+V TPGR++DHL + T++ L+ +++DEAD ML+MGF + I+ ++ P RQT+LF Sbjct: 122 HIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT I A++ R Q +P I+I+ + + +EQ +Y + K ++ +++ L+ Sbjct: 182 SATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQ 241 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++FCNTK+ + V D L G + +SLHGD QRDR + + +F G A +LVATDVAA Sbjct: 242 LMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAA 301 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ ++ V+N+++ D E +VHRIGRT RAG G + + +E + I + Sbjct: 302 RGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKA 361 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGG-KKAKMRPGDVLGALTGDIGLDGADIGKIAVH 421 + P + + + I +K ++ L + G+ I + Sbjct: 362 TIEKAETPTRQELVAYKKDKLATRITTELEKPNIKIWSDLLEEYKEKGITADQIAIALLS 421 Query: 422 PAHVYVAVRQAVAHKAWK 439 + + ++ Sbjct: 422 KE---MKDLAEPERRVFE 436 Score = 68.0 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 43/76 (56%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 A MA L ++ G+ ++ PGD++GA G+ + G+ IG+I + + +V + + + Sbjct: 500 ASMARLFVNVGRIDRISPGDIVGAFAGEANIKGSQIGQIDIFDKYSFVELPHDLVDQVMD 559 Query: 440 QLQGGKIKGKTCRVRL 455 ++ KIKGK+ + + Sbjct: 560 GMRNNKIKGKSINIEI 575 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 5/422 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS LN L + E+G+ +P+Q+ A+P IL GKD+ A+TG+GKTAAF + + Sbjct: 5 KFSELN-LSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAI 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + ++ QAL+LCPTREL QV+ + R+L ++ N +++ + GGQ Q +L+ Sbjct: 64 ELLEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKN 123 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P I++ATPGR++DH+++G++ L+ + +V+DEAD MLDMGF + ++ +++ P RQT++ Sbjct: 124 PQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIM 183 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT E I + R Q+ P I++ + P IEQ +YE K L RL+ Sbjct: 184 FSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFCNTK V + L G A +LHGDL Q+ RD+ + F NG+ +LVATDVA Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 RG+D+ ++E V N++L D E +VHRIGRT RAG G+A SF ++ I + Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIA 419 IK+ P + + T + A + + + L GD DI Sbjct: 364 IKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLMGD-DYTALDIAAAL 422 Query: 420 VH 421 Sbjct: 423 FK 424 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 161/448 (35%), Positives = 232/448 (51%), Gaps = 7/448 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +LN L PA L + ELGY T + +QA +P +L KDV A+TG+GKTAAF L LL Sbjct: 6 TFESLN-LSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID S+ Q Q LVL PTRELA QVA + A+ + ++L L GGQ + +Q +L+ Sbjct: 65 NNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRG 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +IVATPGRL+DH+ +GT+ DAL LV+DEAD ML MGF D ++ ++ P +QT L Sbjct: 125 AQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I IS + +P + I + +EQ F+ S K + R L Q Sbjct: 185 FSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAS-IHKNKAIVRFLEAEQY 243 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VF T+ D + + L G SA L+GD+ Q+ R++T+ R +G V++ATDVA Sbjct: 244 EGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATDVA 303 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ L LV+N+++ D E +VHRIGRT RAG +G AI F E I Sbjct: 304 ARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTN 363 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIA 419 + P + E + + K +V + + L D+ Sbjct: 364 SDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANMAQKLELSAEDLAGAL 423 Query: 420 --VHPAHVYVAVRQAVAHKAWKQLQGGK 445 + + V + + + + Sbjct: 424 LCLAQQQSPIKVEEVKIQPRERNERNDR 451 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 127/404 (31%), Positives = 194/404 (48%), Gaps = 12/404 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F N P + + + T +QA P L+G D+ A+TGSGKT ++ L + Sbjct: 95 NFYEAN-FPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153 Query: 63 QQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I+ LVL PTRELA QV R K + GG P G Q Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIR 212 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ I +ATPGRL+D L+ G +L LV+DEADRMLDMGF I ++ Sbjct: 213 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 272 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQTL++SATWP+ + ++ +D + I I + + A I Q K L RL Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332 Query: 236 LSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 + + + +VF TK+ C + + G A+ +HGD Q++RD L F +G A Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 +L+ATDVA+RGLD++ ++ V+N++ E ++HRIGRTAR+ +G A +F P ++ Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR 396 + + +L+ P + + + + R Sbjct: 453 VSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDR 496 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 150/430 (34%), Positives = 219/430 (50%), Gaps = 17/430 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L L L +N+ GY+ TP+QA +P+ILAGKDV A+TG+GKTA F L LL Sbjct: 6 TFAQLG-LSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 63 QQID--------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 ++ + +AL++ PTRELA Q+ +R+ ++L + + GG Sbjct: 65 YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTAVVFGGINIEP 123 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q +LQ I+VATPGRLLD +++ V+ LV+DEADRMLDMGF I V+ Sbjct: 124 QIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALL 183 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQ 233 RQ+L+FSAT+ I ++ + + P+ IE + + I + K LL Sbjct: 184 SPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLL 243 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L+ ++F TK + L+ SA+++HGD Q+ R Q L F +G + Sbjct: 244 HLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQ 303 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATDVAARG+DI+ L V+N+EL +PE +VHRIGRT RAG+ G AIS + E + Sbjct: 304 ILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKELL 363 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I +L KL IA +AE + K G + G + + Sbjct: 364 ANIEKLLNAKLE------TEQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMENGSEKS 417 Query: 414 DIGKIAVHPA 423 K P+ Sbjct: 418 RSEKHRKLPS 427 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 149/426 (34%), Positives = 216/426 (50%), Gaps = 11/426 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L PA L ++E GY T TP+QA A+PA+L G D+ A+TG+GKTAAF L +L Sbjct: 2 NFDELK-LAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60 Query: 63 QQIDASLF--------QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 ++ +ALVL PTRELA QV +R ++L + GG Sbjct: 61 HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLE-LDSTVIFGGVGMNP 119 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L+ I+VATPGRLLD Q+G + L + L++DEADRMLDMGF + ++ Sbjct: 120 QISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALV 179 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQ 233 P +Q+LLFSAT+ + I ++ + ++P +I++ + + I Q + K LL Sbjct: 180 PKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLA 239 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 +++ ++ S +VF TK +V + L + G A++LHG+ Q R Q L F +G R Sbjct: 240 HIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 LVATD+AARG+DI L VVN+E+ E +VHRIGRT RAG+SG A+SF +E Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFM 359 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I + + Q AE + RP Sbjct: 360 QEIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTE 419 Query: 414 DIGKIA 419 + +I Sbjct: 420 MLQRIR 425 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 567 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 163/421 (38%), Positives = 224/421 (53%), Gaps = 6/421 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ N L + NL +LG+ TP+Q A+P +LAG D+ QA+TG+GKTAAFGL LL Sbjct: 57 FTDFN-LKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLN 115 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID S QALVL PTRELA QV L + +L + GG + Q L+ Sbjct: 116 NIDFSKKCVQALVLAPTRELAQQVGDALATYS-GDDGRNVLVVYGGSSYQAQVGGLRRGA 174 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGRLLD +++G++ LD L TLV+DEAD ML MGF D I+ ++ P RQT+LF Sbjct: 175 RVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLF 234 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT + +I+ R P +I I + IEQ++Y ++ KI + R+ + Sbjct: 235 SATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVE 294 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F T+ + + L G +A L GDL Q R + L RF G +VLVATDVAA Sbjct: 295 SALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAA 354 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLDI + V N++L DPEV+VHRIGRT RAG SG AIS + I Sbjct: 355 RGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGK 414 Query: 363 KLNWQTPPANSSIATLEAEMATLCID--GGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 KL P I +D + +++ AL + G+D D+ A+ Sbjct: 415 KLIKGELPTVEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALV-EQGMDPLDVAAAAL 473 Query: 421 H 421 Sbjct: 474 K 474 Score = 47.2 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 +M L +D GKK + ++ +L+ G+ ++GKI ++ H + V + + K Sbjct: 556 KDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSRELGKIRINETHSSIDVPKGLVDKMLS 615 Query: 440 QLQGGKIKGKTCRV 453 +I K + Sbjct: 616 HNGSYRISKKAVNL 629 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 567 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 160/429 (37%), Positives = 228/429 (53%), Gaps = 10/429 (2%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT +F L L L + ++G+ +P+Q A+P +LAG D QA+TG+GKTAAFGL Sbjct: 1 MTASFEELG-LSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ++ TQAL+LCPTRELA QVA EL +LA IL + GGQP Q +L Sbjct: 60 PILDKLTPERN-TQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 ++V TPGR++DHL++GT+ L + V+DEAD MLDMGF + I+ ++ PAS Q Sbjct: 119 AKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQ 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 +LFSAT P AI +S R R+P + + +P IEQ +YE K+ L RLL Sbjct: 179 RVLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDS 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VFC+TK+ V L + G + SLHG+L Q RD+ + RF VLVAT Sbjct: 239 RAFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ ++ V+N+++ D E +VHRIGRT RAG G A +F E + I Sbjct: 299 DVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIR 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG------DVLGALTGDIGLDG 412 + ++ P+ + + + ++ D L D + Sbjct: 359 CTRARITEGRLPSLRDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFPDGEITS 418 Query: 413 ADIGKIAVH 421 D+ Sbjct: 419 RDVSAALFK 427 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 567 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 144/401 (35%), Positives = 227/401 (56%), Gaps = 5/401 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F LN L L +L+ELGY T +Q A+PA++ GKD+ QA+TG+GKTAAFG+ + Sbjct: 6 KTFKDLN-LSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPI 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++++ + QAL+L PTRELA QVA E++ L + L + GG+ Q + L+ Sbjct: 65 VEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKN-KKVYTLAVYGGKSISHQINFLKK 123 Query: 122 APHIIV-ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+ D L++G ++LD + V+DEADRML+MGF D I++++ + P RQ Sbjct: 124 GSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQN 183 Query: 181 LLFSATWPEAIAAISGRVQR-DPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 LLFSAT P+ I ++ + I + + + I+Q Y + + K L +LS Sbjct: 184 LLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVLSQ 243 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 ++ ++F TK + + + LNE G +A ++HGD Q+ R+ L F G ++LVAT Sbjct: 244 NEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVAT 303 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDIK ++LV+N+ L D E ++HRIGRT RAG G AIS P E ++ I Sbjct: 304 DVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQNIQK 363 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 + + +++ + + ++ + R Sbjct: 364 KTKANIEVINEAQEKKLSSAQKDKSSQKERSSRNQTRRRQR 404 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 148/450 (32%), Positives = 232/450 (51%), Gaps = 7/450 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + + E GY T +Q+ A+P +L D+ Q++TG+GKTAAFGL +L Sbjct: 18 TFKEL-ELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76 Query: 63 QQIDA-SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +T +L+LCPTREL QVA E+R +++ I + GG P Q L+ Sbjct: 77 SLTQPGDKKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKR 136 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+VATPGRL+DH+++ T+ LD +V+DEAD ML+MGF + I+++ F P RQ Sbjct: 137 GADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFA 196 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P+ I +S + +P I + + + I+Q +Y S+ K+ L +LL LH+ Sbjct: 197 FFSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHK 256 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S ++FCNTKK + LN+ G AL LHGD++Q R + RF G VL+ATDV Sbjct: 257 TSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDV 316 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ S+++V+N+++ + E +VHRIGRT RAG GLAI+ + + I + Sbjct: 317 AARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLS 376 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP-GDVLGALTGDIGLDGADIGKI- 418 + P + L + I + ++ + +I Sbjct: 377 NSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGKLFNIAYEGLRNENFTQEEIIVAF 436 Query: 419 --AVHPAHVYVAVRQAVAHKAWKQLQGGKI 446 + A++ + + + +I Sbjct: 437 INKMISESNLEAIKVSKQKDVKNKGEISRI 466 Score = 56.0 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%) Query: 356 ISDMLQIKLNWQTPPANSSIATL----EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 I + ++ A + E++ + + G + + ++ A+ G+ Sbjct: 433 IVAFINKMISESNLEAIKVSKQKDVKNKGEISRIGLSVGDRDGIAAAHLVSAIATASGIR 492 Query: 412 GADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 G DIG+I + V V + A +L KI K V ++ Sbjct: 493 GKDIGRIKIDDNESTVEVPREFAQDIINKLSDTKINSKDVTVTMV 537 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 155/424 (36%), Positives = 239/424 (56%), Gaps = 4/424 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L L P + LGY + T +Q+ +P +LAG+D+ QA+TG+GKTAAF L +L Sbjct: 11 FDALG-LSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLS 69 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++D L + Q LVL PTRELA QVA +R A L +L + GGQ +G+Q L+ P Sbjct: 70 RLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKRNP 129 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +IV TPGR++DH+++GT++LD++ LV+DEAD ML+MGF++ ID + APA RQ LF Sbjct: 130 QVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVALF 189 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P AI ++ DP+ ++I + + + IEQ + K+ +L R++ L Sbjct: 190 SATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMELEPFD 249 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 ++F TK + D L G +A L+GD+ Q R++T+ R G VLVATDVAA Sbjct: 250 GLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDVAA 309 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD++ + VVN+++ DP +VHRIGRT RAG +G AI P E I +++ Sbjct: 310 RGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIERVIRR 369 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKIAV 420 + PP+ ++++ + I + + +L ++ + ++ DI Sbjct: 370 PIPSMEPPSAAALSESRIDRFIGEIRKAQSEQDLDFFYRLLARISQEQEIEMLDIAAALA 429 Query: 421 HPAH 424 + Sbjct: 430 YLNQ 433 Score = 68.0 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 45/92 (48%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 P +A++ + I+ G + + P +++GA+ + GL+G IG+I + H Sbjct: 501 ERPERPERGQPRRDDADLTSYRIEVGHQHGVSPREIVGAIANESGLEGRYIGRIDIRDDH 560 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 V + + + ++ ++ L+ ++G+ R+ Sbjct: 561 SVVDLPKGMPNEVFQHLKRVYVRGQALRITPA 592 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 143/403 (35%), Positives = 208/403 (51%), Gaps = 11/403 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F N P + + + G++ TP+Q+ P L G+D+ A+TGSGKT ++ L L Sbjct: 253 FQEAN-FPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLV 311 Query: 64 QIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + A L+L PTRELA Q+ E + + T+ + GG P G Q Sbjct: 312 HVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSY-SRTRSTCIYGGAPKGPQIRD 370 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I++ATPGRL+D L+ G +L + LV+DEADRMLDMGF I ++ R Sbjct: 371 LRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDR 430 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLL 236 QTL +SATWP + +++ + ++P + I S D A I+Q S K P L +LL Sbjct: 431 QTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLL 490 Query: 237 SL-HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 S S ++F TKKDC V L G ALS+HGD Q +RD L F +G + ++ Sbjct: 491 SDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIM 550 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 ATDVAARGLD+K ++ V+NF+ E ++HRIGRT RAG SG A +F A+ + Sbjct: 551 AATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRN 610 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 + +L+ + PA S+A + M + Sbjct: 611 LVKILR-EAGQVVNPALESMAKSASSMGGGNFRSRGRGGFGNR 652 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 130/387 (33%), Positives = 193/387 (49%), Gaps = 12/387 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F P + L + + T +QA P L+G+D+ A+TGSGKT A+ L Sbjct: 94 VTNFHQA-QFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLP 152 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+ LVL PTRELA QV + K + GG P G Q Sbjct: 153 AIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKS-SRIKSTCVYGGAPKGPQ 211 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L+ I +ATPGRL+D L+ G +L LV+DEADRMLDMGF I ++ Sbjct: 212 IRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 271 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQTL++SATWP+ + ++ +D + I I + + A I Q K L Sbjct: 272 PDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLI 331 Query: 234 RLLSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 +L+ + + ++F TKK C + + G A+ +HGD Q +RD L F +G Sbjct: 332 QLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSG 391 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 A +L+ATDVA+RGLD++ ++ V+N++ E +VHRIGRTAR+ N G A +F P Sbjct: 392 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL 451 Query: 351 QRANIISDMLQIKLNWQTPPANSSIAT 377 ++A + +L+ P + T Sbjct: 452 RQARDLVRVLEEARQAINPKLLQLVDT 478 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 564 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 147/377 (38%), Positives = 211/377 (55%), Gaps = 11/377 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + E GY T TP+QA A+P +L+G+DV A+TG+GKTA+F L ++ Sbjct: 102 TFDQFG-LAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPII 160 Query: 63 QQIDAS--------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q++ +AL+L PTRELADQVA + A+ P + + GG Sbjct: 161 QRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDMNP 219 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L+ I++ATPGRLLDH+Q+ T +L + LV+DEADRMLDMGF + ++ Sbjct: 220 QMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 279 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQ 233 P RQTLLFSAT+ I ++ R+P IE+ ++A + Q Y+ + K + Sbjct: 280 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVV 339 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 +L+ +VFCN+K + + G A ++HGD Q +R Q L F G Sbjct: 340 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 LVATDVAARGLDI L V+NF+L ++ E +VHRIGRT RAG SG A+S C+P E ++ Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459 Query: 354 NIISDMLQIKLNWQTPP 370 I +++ L+ +T Sbjct: 460 ADIEKLIKRTLSLETLE 476 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 564 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 151/429 (35%), Positives = 240/429 (55%), Gaps = 6/429 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L + A L ++E+GY T +QA A+P I+ GKDV ++ TG+GKTAAFG+ Sbjct: 1 MTTFNEL-HISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ + AL++CPTREL QVA ELR+ +++ KI+ + GGQP Q L+ Sbjct: 60 AIEMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLK 119 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR-- 178 I+V TPGR++DHL++ T+ L + +++DEAD ML+MGF + I++++ P+ R Sbjct: 120 RGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSY 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLS 237 QT+LFSATWP I I+ Q DP+ +EI S + +EQ +YE K L+ LL+ Sbjct: 180 QTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLN 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + P C++F NTKK + LN+ A +LHGD++Q R + + +F +GS +L+A Sbjct: 240 HYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA-PEEAQRANII 356 TDVAARG+D+ ++LV+NF++ D E ++HRIGRT RAG GLAI+ + + I Sbjct: 300 TDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSELKNI 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA-LTGDIGLDGADI 415 + + P ++ + + + + + A G+ +I Sbjct: 360 MRYTKTNIKHHALPTSAQMQAHNRKAYIEGVKLACDEGVTDESMEIANELLAEGIAVENI 419 Query: 416 GKIAVHPAH 424 + + Sbjct: 420 ISALISMTY 428 Score = 58.7 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 381 EMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQ 440 E TL GK+ ++ G+++ A++ + G+ IG+I V V V A Sbjct: 449 EAVTLKFSIGKQDGVKTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLVLSN 508 Query: 441 LQGGKIKGKTCRVRLL 456 +Q I+G+ V + Sbjct: 509 MQRAHIRGREVSVEID 524 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 157/436 (36%), Positives = 220/436 (50%), Gaps = 15/436 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS+L L + E GY T +P+QA A+PA+L GKDV A+TG+GKTA F L LL Sbjct: 2 SFSSLG-LSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 63 QQID----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + A Q +ALVL PTRELA QV+ + ++LP + + GG P Q Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQK 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+H ++VATPGRLLD +Q+ V + L LV+DEADRMLDMGF I ++ PA R Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLS 237 Q L+FSAT+ + I ++ + P+ I + +A ++Q K LL +L+ Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIK 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 +VF TK + +L + SA ++HG+ Q R + L F +G RVLVA Sbjct: 240 QEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLDI L VVNF+L PE +VHRIGRT RAG SG A+S + EE + I Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIE 359 Query: 358 DMLQIKLNWQTPPANSSIATLE--------AEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 ++ L Q L + + +K + TG G Sbjct: 360 RLINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTPRTGTGRDG 419 Query: 410 LDGADIGKIAVHPAHV 425 D + + Sbjct: 420 RKTPDSIDGSAQQKNS 435 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 12/370 (3%) Query: 9 VLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS 68 P + + G+ TP+Q+ A P L G+D+ AKTGSGKT AF L + I+A Sbjct: 390 PFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQ 449 Query: 69 L-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 LVL PTRELA Q+ E + + GG Q +L+ Sbjct: 450 PVLREDDGPIVLVLAPTRELALQIQEETNKFG-GTSQISNTCVYGGASKHTQVAALKKGV 508 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 I++ATPGRL+D L+ G +L + LV+DEADRMLDMGF I +I RQTL+F Sbjct: 509 EIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMF 568 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLL-SLHQ 240 SATWP+ + A++ D + + I ST+ A + Q K + L S+ + Sbjct: 569 SATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGR 628 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF T+K + L G ++ +HG+ Q +RD L +F NG +++ATDV Sbjct: 629 DEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDV 688 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 A+RGLDIK ++ VVN++ EV++HRIGRTARAG SG++ S + A+ AN + +L Sbjct: 689 ASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVL 748 Query: 361 ---QIKLNWQ 367 + K+ + Sbjct: 749 TEAKQKIPIE 758 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 138/377 (36%), Positives = 201/377 (53%), Gaps = 8/377 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT FS ++ P L L++ GY T TP+QA A+P ++ G D+ A+TG+GKTAAF L Sbjct: 1 MTKFSDFDLASP-VLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALP 59 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 LL + + LV+ PTRELA Q+A + + L ++L + GG P Q Sbjct: 60 LLHHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLS-LRVLKVFGGVPIRKQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L ++VATPGRL+D +++G V L + LV+DEAD+MLD+GF + + P Sbjct: 119 MRDLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQR 234 RQTL FSAT P ++ ++ + +P + I + Q + K PLL Sbjct: 179 KERQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLV 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L +VF TK V L G ++HG+ Q R++ L F NG ++V Sbjct: 239 NLQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKV 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ + V N+E+ PE +VHRIGRTARAG G AISF + +E + Sbjct: 299 LVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLL 358 Query: 355 IISDMLQIKLNWQTPPA 371 I +++K+ P Sbjct: 359 DIQRQIRMKIPIVDLPE 375 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 148/419 (35%), Positives = 234/419 (55%), Gaps = 3/419 (0%) Query: 5 STLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ 64 + L L P L ++++G+ +P+QAA +P +LAG DV Q+ TGSGKTAAF L +++ Sbjct: 1 AELG-LSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIER 59 Query: 65 IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 +D L Q L+LCPTRELA QVA E+ +LA F + + GGQ + Q +L Sbjct: 60 VDTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQ 119 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 +++ TPGR++DH+++GT+ LD L+ +++DE DRMLDMGF D I+ +++ P RQ+L FS Sbjct: 120 VVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFS 179 Query: 185 ATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 AT P I + R +P ++I++ + P ++Q ++E + K+ +L RL+ L+ Sbjct: 180 ATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRY 239 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 ++FC+TK + + L+ G + LHGD+ Q R +T+ +F L+ATDVAAR Sbjct: 240 GIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAAR 299 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 GLD+ LE+V NF+L D E + HRIGRT RAG G A +F + E + + ++ Sbjct: 300 GLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLD 359 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGK-KAKMRPGDVLGALTGDIGLDGADIGKIAVH 421 + + P+ + + + K P D + G DI +H Sbjct: 360 IRRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRFIDRLLEQGYPSTDIIAALLH 418 Score = 44.1 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 378 LEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKA 437 E + + G+K + P D++G + G L A +G I +H H + Sbjct: 524 REPGFTPVFFNVGRKQLITPADLVGKVAGVTRLPAAVVGAIDIHQRHTLADIADEHVDLV 583 Query: 438 WKQLQGGKIKGKTCR 452 K+L G +IKG++ + Sbjct: 584 VKKLTGIRIKGESLQ 598 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 142/427 (33%), Positives = 212/427 (49%), Gaps = 13/427 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ LNV P L+ + + G+ TP+Q+ P L+G+DV A+TGSGKTA+F L + Sbjct: 93 SFNELNV-PDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAV 151 Query: 63 QQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I A L+L PTRELA QV + A + + GG G Q Sbjct: 152 IHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFADAAS-LRAMCFYGGSAKGTQLR 210 Query: 118 SLQHAPHIIVATPGRLLDHLQ-KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +Q I +ATPGRL+D ++ + + L + LV+DEADRMLDMGF I +I Sbjct: 211 EMQKGGEICIATPGRLIDFIRVQRNL-LSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRP 269 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQR 234 RQTL++SATWP + ++ D + + I S A P I Q K L Sbjct: 270 DRQTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIE 329 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 LL+ + +VF TK+ + ++L G ++HG +QRDR+ TL F +G + Sbjct: 330 LLTSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNI 389 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATDVA+RGLDI ++E VVNF+ E ++HRIGRTAR+ +G A +F + ++A Sbjct: 390 LVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQAR 449 Query: 355 IISDMLQIKLNWQ--TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDG 412 + D+L + ++ + +TL + + PG + G Sbjct: 450 DLIDILDEANQEISAELVQLAGMSNYLRKSSTLKKNPPAFQQKPPGRITGFGNSSSSFPT 509 Query: 413 ADIGKIA 419 DI + Sbjct: 510 QDIRIVN 516 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 163/453 (35%), Positives = 245/453 (54%), Gaps = 12/453 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L P L ++++G+ P+QAA +P +L G+DV + TGSGKT AF + L+ Sbjct: 6 FAELG-LSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALE 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++D L Q LVLCPTRELA QVA E+ LA+F + + GGQ + Q +L Sbjct: 65 RVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGS 124 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 +++ TPGR++DH+++GT+ L AL +V+DEADRMLDMGF + I+ ++ P RQ L F Sbjct: 125 QVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFF 184 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I + R RDP I+I++ P +EQ ++E + K+ L RL+ +H Sbjct: 185 SATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFR 244 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 +VFC+TK + + L+ G + LHGDL Q RD+ + +F L+ATDVAA Sbjct: 245 YGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAA 304 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ LE+V N++L D E + HRIGRT RAG SG A +F + +E + + ++ Sbjct: 305 RGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKL 364 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKM-RPGDVLGALTGDIGLDGADIGKIAVH 421 L P+ + + I +AK +P D + D G DI +H Sbjct: 365 DLRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRMIDRLLDQGYASTDICSALIH 424 Query: 422 ---------PAHVYVAVRQAVAHKAWKQLQGGK 445 PA V+ + + + A W + + Sbjct: 425 LLQGGSTGTPAAVHESAKASAAAPDWARRKSAP 457 Score = 47.6 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 340 LAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 A SF P + A+ + + K P E M+ + ++ G++ ++ P D Sbjct: 475 KASSFAKPTPDKTADGLPALAGRKKQKYARP---PRTGAEPGMSPVVLNVGREHQVTPAD 531 Query: 400 VLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 ++G + G L + +G I +H H V V + K+L G ++KG Sbjct: 532 IVGKIAGVTRLAASIVGAIDIHERHTLVDVAENAVPVVIKKLAGIRLKG 580 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 138/417 (33%), Positives = 206/417 (49%), Gaps = 11/417 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F T PP L + G+ + TP+QA + P L +DV AKTGSGKT + L Sbjct: 149 ITSFET-GGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLP 207 Query: 61 LLQQI----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 I + LVL PTRELA Q+ E + R L GG P G Q Sbjct: 208 GFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRS-SRISSTCLYGGAPKGPQL 266 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L ++VATPGRL D L+ +SL ++ LV+DEADRMLDMGF I +++ P Sbjct: 267 RDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPP 326 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQ 233 RQTL+++ATWP+ + I+ + P+ + I S D A I Q + K+ L+ Sbjct: 327 RRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLE 386 Query: 234 RLLSLHQPS-SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 ++L ++FC TK+ C + L A ++HGD Q +R++ L F +G + Sbjct: 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRS 445 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 +LVATDVAARGLDIK + +V+N++ E +VHRIGRT RAG +G+A +F ++++ Sbjct: 446 PILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKY 505 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 A + +L+ + + + L + G Sbjct: 506 AADLIKILEGANQRVPRDLADMASRGGRGGRKRNRWATRSDRGGSHSELDSRYGGRD 562 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 562 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 128/385 (33%), Positives = 200/385 (51%), Gaps = 13/385 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F P L+ + G+ T +Q+ P L+G+DV A+TGSGKT + L Sbjct: 136 VETFDEAG-FPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP 194 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+A L+L PTRELA Q+ E+ + + + + GG P G Q Sbjct: 195 AIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKS-SRIRNTCVYGGVPKGPQ 253 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 L + +ATPGRL+D L+ G +L + LV+DEADRMLDMGF I +I Sbjct: 254 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR 313 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQT ++SATWP+ + ++ D + + I S D A I Q S K + Sbjct: 314 PDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 373 Query: 234 RLLS---LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 + L ++ + C++F TK+ + L + G ALS+HGD +Q++RD L F G Sbjct: 374 KHLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 433 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + ++VATDVA+RG+D++ + V+N++ + E +VHRIGRT RAG G AI+F + + Sbjct: 434 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNS 493 Query: 351 QRANIISDMLQIKLNWQTPPANSSI 375 ++A + +L + Q P + + Sbjct: 494 KQARDLVTIL-TEAKQQIDPRLAEM 517 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 562 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 131/405 (32%), Positives = 205/405 (50%), Gaps = 15/405 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F T P + L G+ T +Q P L+G D+ A+TGSGKT F L Sbjct: 167 ITSFVTSG-FPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLP 225 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I A LVL PTREL +Q+ + + + + + GG P Q Sbjct: 226 AMIHIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFGS-IFKLRNTAIYGGVPKRPQ 284 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 + S+++ I +A PGRL+D L++G +L + LV+DEADRMLDMGF I ++ Sbjct: 285 QASIRNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIR 344 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRD-PLAIEIDSTDA---LPPIEQQFYETSSKGKIPL 231 RQTLL+SATWP+ + ++ + ++ P+ I + S DA I+Q K Sbjct: 345 PDRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAK 404 Query: 232 LQRLLSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFA 288 L+ L ++FC TK+ + L G AL +HGD +Q +R L F Sbjct: 405 LKMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFR 464 Query: 289 NGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE 348 G++ +++ATDVAARGLDIK + V+NF+ E ++HRIGRT RAG +G+++SF P+ Sbjct: 465 TGASPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPD 524 Query: 349 EAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + + A+ + +L+ + + PP ++ M + Sbjct: 525 KYRMASDLIKVLK-EAKQRVPPELFKLSPQNKRMHPRNTGFRRNN 568 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 562 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 148/402 (36%), Positives = 224/402 (55%), Gaps = 8/402 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F +LN L PA L + E GY T TP+QA A+P ++ G D+ A+TG+GKTA F L L Sbjct: 2 SFESLN-LNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60 Query: 63 QQI----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + ++ + LVL PTRELA QV R+ +FL + +++ GG P+ +Q Sbjct: 61 NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFL-RARTVSIVGGMPYPLQNKL 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L I+VATPGRLLDH+++G + L L L++DEADRMLDMGF ++ + A R Sbjct: 120 LSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAER 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSK-GKIPLLQRLL 236 QTLLFSAT IA I+ ++ ++P +++ + + IEQ+ + K LL+ LL Sbjct: 180 QTLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLL 239 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + ++F +TK+ + + L G +LHGD+ Q R++TL + +G +VLV Sbjct: 240 IAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLV 299 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARG+D+ + V+N++L E +VHRIGRT RA N+G+AISF + + I Sbjct: 300 ATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKI 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 +L ++ + + G KA R G Sbjct: 360 EQYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGG 401 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 234/425 (55%), Gaps = 7/425 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN+ L +++LGY +P+Q ++P +L G D+ +++TGSGKTAAF + ++ Sbjct: 2 KFNELNIGNE-ILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + I+A+ TQAL+LCPTREL QV+ E+ +L ++ KIL++ GG Q SL+ Sbjct: 61 ENIEAN-GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLKKG 119 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+V TPGRL+D +++ + LD L T+V+DEAD M DMGF D + ++ +RQT Sbjct: 120 VEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCF 179 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT I S Q +P ++I S + + I+Q + + K L RLL +H+ Sbjct: 180 FSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLLEIHKA 239 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VFCNTK+ + ++L + LHGDL+Q RDQ + +F N + ++LVATD+A Sbjct: 240 NLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVATDIA 299 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ +++V N++L E +VHRIGRTARAG SGL+ S + + R I + + Sbjct: 300 ARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIENYTK 359 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAK---MRPGDVLGALTGDIGLDGADIGKI 418 + P + I R D+L L + G D I ++ Sbjct: 360 ANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLM-EKGYDPFMICQV 418 Query: 419 AVHPA 423 + Sbjct: 419 LLKDK 423 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 160/472 (33%), Positives = 254/472 (53%), Gaps = 26/472 (5%) Query: 1 MTA-FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 M F+ + L ++ LGY + VQ +P IL KD+ V+++TGSGKTAAFG+ Sbjct: 1 MNNEFTKFKI-SDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L +++D + Q LVL PTRELA QV+ ++ + RF K +++ G +P Q L Sbjct: 60 PLCEKVDWNENIPQILVLTPTRELAVQVSEDITNIGRF-KRIKSVSIFGKEPISEQERKL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + H++V TPGR+LDH+ +G+++L + V+DEAD ML+MGF ++ +IR P + Sbjct: 119 KQKTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKV 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT PE I + + P+ I I++ I+ Y T+ + KI L +L Sbjct: 179 TMLFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILIT 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +P + V+F TK++ V L G S +HG + Q++R + F G R+LV+T Sbjct: 239 EKPETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVST 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 D+A+RG+D+K + V+N++L + E +VHRIGRT RAG G AISFC E+ + + I + Sbjct: 299 DLASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEE 358 Query: 359 MLQIKLNWQTPPANSSIATLEAE----------------------MATLCIDGGKKAKMR 396 + K+ P + ++E + + ++GGKK K+R Sbjct: 359 FIGFKIPVYNLPEKIMVEKEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKKIR 418 Query: 397 PGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 GD++GA+ G+ DIG I V + YV + + +L+ IKG Sbjct: 419 AGDIVGAICKMDGIKSEDIGIIDVQDSVSYVDILNGKGKRVIDELKNITIKG 470 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 161/464 (34%), Positives = 246/464 (53%), Gaps = 13/464 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F L L L + ELG+ +P+Q+ A+P +L G+DV QA+TG+GKTAAFGL Sbjct: 4 VESFKDL-PLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLP 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQ+IDA+ QALVLCPTRELA QVA L LA+ L +IL++ GGQP Q +L+ Sbjct: 63 LLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALR 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR+LDH+ +GT+ L + V+DEAD MLDMGF + I+ ++ P Q+ Sbjct: 123 RGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQS 182 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 FSAT P+ I ++ R R+P + + + EQ ++E ++ + R+ + Sbjct: 183 AFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAY 242 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VF TK+ + AL + G A +LHGDL Q R++ + RF G VLVATD Sbjct: 243 IPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATD 302 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ ++ V+NF+L DPE +VHRIGRT RAG +G A SF A + + I + Sbjct: 303 VAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQRV 362 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV-LGALTGDIGLDGADIGK- 417 +++ + P + + + G + + + G D + Sbjct: 363 TGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLAAT 422 Query: 418 -IAVHPAHVYVAVRQAVAHKAWKQLQGGKIK-----GKTCRVRL 455 + + + + A G+++ G+ R+ Sbjct: 423 LLRMIMQRDRIDLPGARQTDDIGT---GRVRLFFNVGRRMRITP 463 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 144/395 (36%), Positives = 226/395 (57%), Gaps = 4/395 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ LN LP L+ + E+G+ T TP+Q A+P +L G+D+ A+TG+GKTAAFGL Sbjct: 4 MTTFADLN-LPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLP 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L ID QA+VL PTRELA Q A + A +P K++T+ GG + Q L+ Sbjct: 63 MLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLK 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA--SR 178 ++V TPGR++D ++KG + L+ ++ LV+DEAD ML MGF++ ++ + P R Sbjct: 123 SGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKR 182 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLS 237 T LFSAT P+ I ++ + DP+ IE+ + I Q + K K+ L R+L+ Sbjct: 183 ITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLA 242 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF T+ D V + G +A ++ GD+ Q +R++ + R +GS VLVA Sbjct: 243 TRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVA 302 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TDVAARGLD++ + LV+NF++ + E +VHR+GRT RAG +G +++F P+E R I Sbjct: 303 TDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQIE 362 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 + K+ P+ ++ A + + Sbjct: 363 KLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIE 397 Score = 58.3 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 44/72 (61%) Query: 383 ATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQ 442 ++ GK+ ++PG ++GA+TG+ G++GAD+G+I ++P V + ++ KA ++ Sbjct: 493 RRYRVEVGKRDGVKPGAIVGAITGEGGVNGADLGRIDIYPTFSLVELSGELSEKAASKIS 552 Query: 443 GGKIKGKTCRVR 454 + G+ R++ Sbjct: 553 KAFVSGRQLRIK 564 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 150/449 (33%), Positives = 231/449 (51%), Gaps = 9/449 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F A L L + GY +P+Q AA P ++ G+D+ QA+TG+GKTAAF L L Sbjct: 71 SGFDGFG-FSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPL 129 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L+++++ Q LVL PTRELA QVA + A P+ K+L + GG F Q +L+ Sbjct: 130 LERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 189 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 ++V TPGR++DH+++GT+ L +LV+DEAD ML MGF D ++ ++ P RQ + Sbjct: 190 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 249 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I +S R DP + I + D I Q+ K+ LQR+L Sbjct: 250 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACG 309 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 ++F TK V + L G L+GD+ Q R++T+ R +GS VLVATDV Sbjct: 310 GEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDV 369 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + LV+N+++ +D E +VHRIGRT RAG +G A+ F P E + + Sbjct: 370 AARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERAT 429 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCID-------GGKKAKMRPGDVLGALTGDIGLDGA 413 + P N++I + + G + +++ + ++ L Sbjct: 430 GQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGALIQELMQRVATELQLTPE 489 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWKQLQ 442 I A++ A + + + Q Sbjct: 490 QIALAALNLAIGPNGLLRKGDDDWIQNTQ 518 Score = 64.1 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 40/83 (48%) Query: 374 SIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAV 433 E +M + G + +++PG+++GA+ G+ GL G IG+I + H V + + + Sbjct: 541 PARAPEEDMQRYRVAVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGM 600 Query: 434 AHKAWKQLQGGKIKGKTCRVRLL 456 + L+ ++ + ++ Sbjct: 601 PEDIFNSLRTLRVMNRELQITQD 623 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 145/423 (34%), Positives = 224/423 (52%), Gaps = 6/423 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L + P L + ++GY + T +QAA +PA++AG DV A+TG+GKTAAF + +L Sbjct: 14 TFADLQI-HPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML 72 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +ID + QALVL PTRELA QVA R +L +L + GG + +Q L+ Sbjct: 73 SKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRG 132 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DHL++ T+ L ++ LV+DEAD ML MGF+D ++ ++ P +Q L Sbjct: 133 AQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVAL 192 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI +S + DP + + A+ I Q + + + K+ L R+L + Sbjct: 193 FSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDALTRVLEVEPF 250 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF TK+ + + + L G SA ++ GD+ Q R++T+ +G +LVATDVA Sbjct: 251 EAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVA 310 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + V+N+++ D E +VHRIGRT RAG SG A+ F +P E I + Sbjct: 311 ARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATR 370 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKIA 419 L P + T I ++ + + ADI Sbjct: 371 QTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAAL 430 Query: 420 VHP 422 Sbjct: 431 AVQ 433 Score = 60.7 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%) Query: 377 TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHK 436 ++ T + GK+ K+ PG ++GA+ + GL +D G+I + P V + + Sbjct: 464 KRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRA 523 Query: 437 AWKQLQGGKIKGKTCRVRLLK 457 K+L +I G +R + Sbjct: 524 TLKKLAQTRISGVLIDLRPYR 544 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 142/411 (34%), Positives = 209/411 (50%), Gaps = 12/411 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F + LPP L L G+ + TP+QA P L +D+ AKTGSGKT + + Sbjct: 436 TFESSG-LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 494 Query: 63 QQI----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + S L+L PTRELA Q+ E R R L GG P G Q Sbjct: 495 ILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRS-SRISCTCLYGGAPKGPQLKE 553 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I+VATPGRL D L+ + ++ LV+DEADRMLDMGF I ++ P R Sbjct: 554 LERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 613 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQRL 235 QTL+++ATWP+ + I+ + +P+ + I D A I Q K L+++ Sbjct: 614 QTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQI 673 Query: 236 LS-LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L + S ++FC+TK+ C + ++ A+ +HGD Q +RD L +F +G + V Sbjct: 674 LRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCV 732 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 L+ATDVAARGLDIK + +V+N++ E +VHRIGRT RAG +G+A +F ++ + A Sbjct: 733 LIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAP 792 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALT 405 + +L+ N Q PP IA ++ + D G T Sbjct: 793 DLIKVLE-GANQQVPPQVRDIAMRGGGGGGPGYSQDRRGMVNRFDSGGGGT 842 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 154/448 (34%), Positives = 233/448 (52%), Gaps = 9/448 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F LN+ P+ + + ++G+ TP+Q +P G+D+ QA+TG+GKT AFG+ Sbjct: 1 MALFKDLNI-QPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+ QALVL PTRELA QVA EL +L + + K L + GGQ Q +L+ Sbjct: 60 CVEQVVVEEKHPQALVLTPTRELAIQVAEELNKLGQ-VKGIKALPIYGGQEITRQITALK 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 P IIVATPGR +DH+++ T+ + L +V+DEAD ML MGF + I+ +++ P RQT Sbjct: 119 KRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P + I+ R P++I + + + IEQ++ S K K L LL + Sbjct: 179 LLFSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLDME 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P ++F TK+ + ++L+ G + LHGD++Q RDQ + +F GS V+VATD Sbjct: 239 TPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V+NF+L D E +VHRIGRT RAG G++ SF +E I + Sbjct: 299 VAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEES 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + K+ P + + A + A D + A Sbjct: 359 TRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLLEEFDPVVLVSAA 418 Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKIK 447 + V + + K K ++ Sbjct: 419 LQM------VTKEPSKKQVKITGEAPVR 440 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 142/424 (33%), Positives = 217/424 (51%), Gaps = 4/424 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGL 61 F L L + L L + G+ TP+Q +P L G+ D+ QA+TG+GKT AFG + Sbjct: 6 KFKALG-LSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPI 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++I + QA+VL PTRELA QV+ EL L + I+ + GGQ Q L+ Sbjct: 65 IEKIPEKSGKVQAIVLTPTRELAIQVSEELNSL-KGDKKLHIVPIYGGQSMTQQFRMLKS 123 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR++DHL++ +++L+ + V+DEAD ML+MGF D I ++++ ++ L Sbjct: 124 GVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRML 183 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P+ I I + ++ + I D + EQ ++E K L R++ + Sbjct: 184 FFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIED 243 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VFC TK D + L + G +A +LHGDL QR+R++ L RF +LVATDV Sbjct: 244 EFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDV 303 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+DI L V+N+ L DPE +VHRIGRT RAG G AI+F E +R I Sbjct: 304 AARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIKKTS 363 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + + P + + ++ K + + + I + Sbjct: 364 KSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFLEEYPAEKILAALL 423 Query: 421 HPAH 424 + Sbjct: 424 KYSF 427 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 153/420 (36%), Positives = 210/420 (50%), Gaps = 7/420 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F++L L L + GY +P+Q A+PA+L GKDV A+TG+GKTA F L +L Sbjct: 2 SFTSLG-LSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 63 QQIDASLF----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + + Q +ALVL PTRELA QV G + + LP + GG Q Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLP-LTSTVVFGGVKINPQMQK 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ ++VATPGRLLD + V D L LV+DEADRMLDMGF I ++ F P R Sbjct: 120 LRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKR 179 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLS 237 Q LLFSAT+ + I +++ + +P+ I + P +EQ Y K K P+L +L+ Sbjct: 180 QNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIK 239 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK + L E ++ +HG+ Q R + L F G RVLVA Sbjct: 240 DNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVA 299 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARG+DI L VVNF+L E +VHRIGRT RAG G AIS +E I Sbjct: 300 TDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIE 359 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 ++Q L + + + L KK K G +G+ GK Sbjct: 360 RLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGK 419 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 143/421 (33%), Positives = 211/421 (50%), Gaps = 12/421 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L+ L L + + GY+ TP+QA +P ILAGKDV A+TG+GKTA F L LL Sbjct: 6 TFEQLD-LSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 63 QQID--------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 + + +AL++ PTRELA Q+ +R+ ++L + + GG Sbjct: 65 HHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTTVVFGGVNIEP 123 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L++ I+VATPGRLLD ++ V+ LV+DEADRMLDMGF I V+ Sbjct: 124 QITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALL 183 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQ 233 P+ RQ+L+FSAT+ + I ++ + + P+ IE+ + + I + + K LL Sbjct: 184 PSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLL 243 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L+ +VF TK + L+ AL++HGD Q+ R Q L F +G + Sbjct: 244 HLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQ 303 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATDVAARG+DI+ L VVN+EL +PE +VHRIGRT RAG+ G AIS + E + Sbjct: 304 ILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETELL 363 Query: 354 NIISDMLQIKLNWQTPPANS-SIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDG 412 I +L KL + + + + + G Sbjct: 364 TSIEKLLNTKLEIEQIAGFDAELFVRSLPDRKNRVSADIARRSNKQAEVANGEKTRKYSG 423 Query: 413 A 413 + Sbjct: 424 S 424 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 559 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 156/452 (34%), Positives = 241/452 (53%), Gaps = 5/452 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L LP L +++LG+ T +P+Q + +P +L G DV A+TGSGKTAAF L LL Sbjct: 6 TFNDLG-LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 QID S Q LV+ PTRELA QVA ++ T+I+TL GGQ + +Q +L+ Sbjct: 65 AQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQG 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR+LDH+++GT++L L +V+DEAD ML MGF D ++ V+ P + QT L Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT PE I I+ R DP ++I + + P I+Q + K L R L + Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + ++F TK + + L + G + +L+GD+ Q+ R+QTL R NGS ++VATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+DI+ + LVVN+++ D E +VHRIGRT RAG SG A+ F P E + I +++ Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD---VLGALTGDIGLDGADIGKI 418 +N P + + + I + + T D + + Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT 450 + + + + ++ + + + Sbjct: 425 MLLQGKQKLILPPDPPMEKRRRERNDRGDRRE 456 Score = 47.9 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 32/76 (42%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 M I+ G+ + ++GA+ + ++ IG I ++ + V + Q + + Sbjct: 473 PQPMDLYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELL 532 Query: 439 KQLQGGKIKGKTCRVR 454 +Q ++ K ++ Sbjct: 533 QQFAKTRVLNKQMQMS 548 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 158/460 (34%), Positives = 253/460 (55%), Gaps = 8/460 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L +L ++ L +LG+ TP+Q A+P ++ G D+ QA+TG+GKT AFG+ +++ Sbjct: 5 FNDLPILDTTKV-ALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVE 63 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 + D SL QTQ L+L PTREL +QV E+ +L +F P ++ T+ GG+ + Q L P Sbjct: 64 KTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDRKP 123 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HIIVATPGR++DH+ +GTV L + TL +DEAD ML MGF D I+ +++ P +RQT+LF Sbjct: 124 HIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLF 183 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I I+ Q++P I+I++ + I Q ++ K K LL+RLL PS Sbjct: 184 SATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFENPS 243 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++F NTK + ++L + G +A +LHGDL+Q R + RF + +LVATDVAA Sbjct: 244 TAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATDVAA 303 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ +E++VN++L E++VHRIGRT RAG G A +F P + + ++++ + Sbjct: 304 RGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLAHYTKA 363 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR------PGDVLGALTGDIGLDGADIG 416 + P + + + I + ++ + D L+ Sbjct: 364 DIKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQLLNYLLDS 423 Query: 417 KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 + + + + A + + +G K R Sbjct: 424 MLPTKKTYETIEIIPEKASRRSQDERGNDKGRKDSRSSRD 463 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 131/382 (34%), Positives = 195/382 (51%), Gaps = 10/382 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS P ++ + + + + TP+Q P L+G+D+ A+TGSGKTA+F L + Sbjct: 78 KFSEAG-FPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAI 136 Query: 63 QQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 A L+L PTRELA QV + K L GG Q + Sbjct: 137 VHAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFC-YSAGFKSACLYGGASRTGQAE 195 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 +L +P +++ATPGRLLD L+ ++ LV+DEADRMLDMGF +I V+ Sbjct: 196 ALGQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPD 255 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDST--DALPPIEQQFYETSSKGKIPLLQRL 235 RQTL++SATWP + A++ D + I + ST A I Q + K L L Sbjct: 256 RQTLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSL 315 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L+ + +VF TKK +C L + G A ++HGD Q++RD+ L F G VL Sbjct: 316 LNSFDNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVL 375 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVA+RGLDI + ++N++ E ++HRIGRT R+ G A +F + ++ + A Sbjct: 376 VATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARE 435 Query: 356 ISDMLQIKLNWQTPPANSSIAT 377 + ++L+ + P IA Sbjct: 436 LIEVLK-EARQTIPDELFKIAE 456 >UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B113_SULD5 Length = 463 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 215/457 (47%), Positives = 284/457 (62%), Gaps = 8/457 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F+ L + A L L LGY MTP+Q A+LP IL G+D+ +AKTGSGKT AFGL L Sbjct: 6 TPFNHL-IQNSAMLETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPL 64 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L + + Q++VLCPTRELA+QV+ ELR+LA F N KI+TLCGG F Q SL+H Sbjct: 65 LLALHVKQMRIQSVVLCPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEH 124 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HI+V TPGR+L HLQ+ T++ + + TLV+DEADRMLDMGF + I+ +I P RQTL Sbjct: 125 GAHIVVGTPGRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTL 184 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALP--PIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT+P I + VQ++ L I ++ I Q + + K L+ L Sbjct: 185 LFSATFPREIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLNE 244 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P S ++FC TK A+ +L E G AL LHGDLEQ RD+ L+ FANGSA++LVATD Sbjct: 245 MPKSVIIFCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATD 304 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARGLDIK +E+V+N+EL E++ HRIGRT R G G AISF P E + + + Sbjct: 305 LAARGLDIKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTPSEESFLHELERV 364 Query: 360 ---LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIG 416 K + P + AE TLCIDGGKK K+R GD+LG LT DIGL+G+ IG Sbjct: 365 GFAFTCKDAREILPL--HVKPKRAEFITLCIDGGKKQKVRAGDILGVLTKDIGLEGSLIG 422 Query: 417 KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 KI + + YVA+++ A KA+ L IK + ++ Sbjct: 423 KIDILEKYAYVAIKREYADKAFNGLCATTIKNRRFKI 459 >UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=A6VVX6_MARMS Length = 438 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 216/438 (49%), Positives = 298/438 (68%), Gaps = 1/438 (0%) Query: 21 LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80 +G+ T TP+Q +LP ++ GKD+ QA+TGSGKT AF + LL +I+ F QALV+CPT Sbjct: 1 MGFTTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIALLLKINPRFFGVQALVMCPT 60 Query: 81 RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKG 140 RELADQV+ E+R++AR+ N K+L+LCGG PFG Q SL+H HI+V TPGRL++HL+KG Sbjct: 61 RELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGRLMEHLRKG 120 Query: 141 TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR 200 T+ L+ALNTLV+DEADRMLDMGF D+I +++ P++RQTLLFSAT+ + I AIS Q Sbjct: 121 TLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAISKEFQS 180 Query: 201 DPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCD 259 P++I++++ + L P IEQ F + +K K L L +P +VFCNTK + Q V D Sbjct: 181 TPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFCNTKAESQVVAD 240 Query: 260 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 319 L+E +A ++HGDLEQR RDQ LVRF+N S+ VLVATDVAARG+D+K ++LVVN++ Sbjct: 241 WLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLVVNYDTT 300 Query: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLE 379 D +VH HRIGRT RAG +G+A++ ++ + I I N+ A L Sbjct: 301 RDTDVHTHRIGRTGRAGAAGIAVNLVTSKDDYKVRDIESRFNITANFIELEAIDPHYRLI 360 Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 + T+ D G+K K+RPGD+LGALT +GLD + +GKI + H YV+V VA K Sbjct: 361 PQKTTISFDAGRKNKLRPGDILGALTAGLGLDKSQVGKIDIFDFHAYVSVDNEVAKTVVK 420 Query: 440 QLQGGKIKGKTCRVRLLK 457 + + KIKGK R R+L+ Sbjct: 421 EFENKKIKGKNIRARILR 438 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 145/431 (33%), Positives = 222/431 (51%), Gaps = 5/431 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILA-GKDVRVQAKTGSGKTAAFGLGLL 62 F L L + + GY T +Q LP L+ KD+ QA+TG+GKTAAFG+ LL Sbjct: 20 FEDFG-LSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLL 78 Query: 63 QQIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ID + +A+++ PTRELA Q+ EL+ L + KI TL GGQ Q L+ Sbjct: 79 ERIDFKANKFVKAIIVTPTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEK 137 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR++DHL + T+ L + LV+DEADRMLDMGF D + ++I+ +++T Sbjct: 138 GVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTF 197 Query: 182 LFSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I I+ + ++ + + + EQ ++E K K+PLL R++ ++ Sbjct: 198 LFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNP 257 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VFC TK + + L ++G +A LHGD Q R++ L +F R+LV TDV Sbjct: 258 DFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDV 317 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+DI L V+N+ + DPE +VHRIGRT RAG G AI+F ++ + Sbjct: 318 AARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFA 377 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + K+ + P I + E + K + + + Sbjct: 378 KAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQIIEEMGPTEAVEMLLH 437 Query: 421 HPAHVYVAVRQ 431 + V + Sbjct: 438 TLIKDKIDVSR 448 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 141/373 (37%), Positives = 204/373 (54%), Gaps = 10/373 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L+++ P L L E GY TP+Q A+P +L+ +D+ A+TG+GKTAAF + +LQ Sbjct: 3 FSELSLIDP-ILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQ 61 Query: 64 QIDAS-------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 + + + L+L PTRELA Q+A R L N + + GG Q Sbjct: 62 LLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHL-NIRNTVIFGGVSQHSQV 120 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 ++L+ +++ATPGRLLD + +G +SL + V+DEADRMLDMGF + VI P Sbjct: 121 NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT 180 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRL 235 RQ+L FSAT P +A ++ + +P +E+ IEQ Y + K LL + Sbjct: 181 HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHI 240 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L S +VF TK V L + G A ++HG+ Q R + L F + RVL Sbjct: 241 LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL 300 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARG+D+ L V+N+EL PE +VHRIGRT RAG+ G+A+SFC EE + Sbjct: 301 VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRD 360 Query: 356 ISDMLQIKLNWQT 368 I ++ ++ Sbjct: 361 IHKLIGKRVPVID 373 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 174/429 (40%), Positives = 248/429 (57%), Gaps = 9/429 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L + PA L L ELGY TP+Q A+P +L G+D+ QA TG+GKTAAF L LL Sbjct: 9 SFAALGI-APALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLL 67 Query: 63 QQID---ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 Q+++ +ALVL PTRELA QVA + R R L ++L++ GGQPFG Q +L Sbjct: 68 QRLEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRL-GVQVLSVYGGQPFGQQLRAL 126 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + H++VATPGR LDH+ +GT++LD + T+V+DEAD MLDMGF++A+++++ P +RQ Sbjct: 127 RRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQ 186 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP----PIEQQFYETSSKGKIPLLQRL 235 T+LFSAT P IAAI+GR R+P+ ++I A P + Q Y K L R+ Sbjct: 187 TVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRV 246 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L + PSS ++FC T+ + + +AL G A +LHG Q RD+ + RF G+A +L Sbjct: 247 LDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELL 306 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI+ + V+N+++ PEV+VHRIGRT RAG G AI+ P E Sbjct: 307 VATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIRN 366 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 + + ++ T P + + E+ + + D DI Sbjct: 367 VERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVEGLADEFDVMDI 426 Query: 416 GKIAVHPAH 424 AV AH Sbjct: 427 AAAAVKLAH 435 Score = 67.6 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%) Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 + + + +A L + G+ A +RP D++GA+ + L DIG I + Sbjct: 480 EAQARPRRETREARETDGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIAD 539 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 V V A + L+ ++KG+ +VR Sbjct: 540 GFSTVEVPADAADAVIEALRATRLKGRKVQVRRD 573 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 202/371 (54%), Gaps = 11/371 (2%) Query: 14 QLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ 73 L + G+ TP+QA + P L +D+ AKTGSGKT + + + Q Sbjct: 33 LLFQVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQ 92 Query: 74 ----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 LVL PTRELA Q+ E + R L GG P G Q L I+VAT Sbjct: 93 MGPTVLVLSPTRELATQIQDEAVKFGRS-SRLSCTCLYGGAPKGPQLRDLDRGADIVVAT 151 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGRL D L+ VSL ++ LV+DEADRMLDMGF I +++ PA RQTL+++ATWP+ Sbjct: 152 PGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPK 211 Query: 190 AIAAISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS-SCV 245 + I+ + +P+ + I + D A I Q K L+++L +P + Sbjct: 212 EVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKII 271 Query: 246 VFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305 +FC+TKK C + L A ++HGD Q +RD L +F G + VLVATDVAARGL Sbjct: 272 IFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGL 330 Query: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLN 365 DIK + +V+N++ E +VHRIGRT RAG +G+A +F A ++A+ A+ + +L+ N Sbjct: 331 DIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLE-GAN 389 Query: 366 WQTPPANSSIA 376 + PP +A Sbjct: 390 QRVPPEIRDMA 400 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 245/480 (51%), Gaps = 25/480 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F +N L L L LG+ + VQ +P IL KD+ V+++TGSGKTA+FG+ Sbjct: 3 IDKFENMN-LSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIP 61 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L + ++ + +AL+L PTRELA QV ++ + R L + + G QPF Q L+ Sbjct: 62 LCELVNVEENKVKALILVPTRELAIQVKEDISNIGR-LKKVRCAAIFGKQPFNEQIRELK 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI+ TPGR++DH+++G + ++ ++ +++DEAD+ML+MGF D I DV+ P S+ T Sbjct: 121 QRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P+ I + +P + I S I ++++ + K L + L Sbjct: 181 ALFSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAF 240 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 S ++FCNTK + + L + S LHGD++Q+DR T+ F N +VLVATD Sbjct: 241 TDESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATD 300 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+ I + V N+E+ + E +VHRIGR+ R GLAIS + E + N I + Sbjct: 301 VAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEEY 360 Query: 360 LQIKLNWQTPPANSSIATLEA----------------------EMATLCIDGGKKAKMRP 397 + + I E+ + I GKK K+R Sbjct: 361 INYSIEEANLLEYEEIIEGRKRFFESQKNDYNNKTNVKKNIHNEVTKIHITAGKKKKIRN 420 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 D++GA + L G DIG I V H +V + + K+ + ++KGK ++ K Sbjct: 421 IDIVGAFSNLEELTGEDIGIIDVQDGHSFVDILNGKGNLILKRYKEIRLKGKVAKLSKAK 480 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 153/431 (35%), Positives = 242/431 (56%), Gaps = 8/431 (1%) Query: 1 MTA--FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFG 58 M + F+ LN L + +G+ T +QA ++P I AG DV +++TG+GKT AFG Sbjct: 1 MNSIPFAQLN-LSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFG 59 Query: 59 LGLLQQIDAS--LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 + ++ ID +TQ L+LCPTRELA Q E+ ++A++ + + + GG P Q Sbjct: 60 VPAVELIDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQI 119 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ +I+V TPGR++DHL++ T+ LD L +++DEAD ML+MGF + ++ +++ P Sbjct: 120 MRLKRGANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPD 179 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRL 235 RQT+LFSAT P AI A++ + Q+DP IEI+ L IEQQFYE K+ L + Sbjct: 180 ERQTILFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGII 239 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L H P+ ++FCNTK+ V L+ G SA LHGD++Q R + + F G ++L Sbjct: 240 LQYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKIL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA-PEEAQRAN 354 VATDVAARG+D+ +++ V+N+++ + E +VHRIGRT RAG G A++ C+ + Sbjct: 300 VATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDELY 359 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGG-KKAKMRPGDVLGALTGDIGLDGA 413 I M + + ++ P+ I E ++ A+ + G + Sbjct: 360 HIVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKGYNPT 419 Query: 414 DIGKIAVHPAH 424 I +A+ A Sbjct: 420 TIAAVALEMAF 430 Score = 49.9 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 + I+ G++ + P ++GA+T L G DIGKI ++ VA+ + Sbjct: 453 RGSFRKIEINIGRENHIAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIESTV 512 Query: 439 KQLQGGKIKGKT 450 K + G KI GK Sbjct: 513 KAMDGCKICGKP 524 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 152/409 (37%), Positives = 223/409 (54%), Gaps = 6/409 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAIL-AGKDVRVQAKTGSGKTAAFGL 59 M F L V P L + E+GY PVQ +P +L G DV A+TG+GKTAAFGL Sbjct: 1 MKTFEELGV-SPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q++D QAL+LCPTREL Q+AG+L ++++ KIL + GG Q L Sbjct: 60 PLIQKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRML 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + HIIVATPGRL+D +++ L+ + +VMDEAD ML+MGF+D+I+ ++ P R Sbjct: 120 KTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TL+FSAT I+ I+ + D I I + + + Y +K K L+R+ Sbjct: 180 TLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRIADY 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+K+ Q + D L + G +A SLHG+L Q RD + +F ++LVAT Sbjct: 240 YPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N+ L D E + HR GRT RAG +G++I+ E + I Sbjct: 300 DVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREIER 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGD 407 ++ K P+ I + ID +K K+ ++ L G Sbjct: 360 IINKKFIMGEMPSGKQICEQQ---LIKLIDDIEKVKVNDEEIESFLPGI 405 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 166/461 (36%), Positives = 243/461 (52%), Gaps = 11/461 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F+ LN L P+ + ++E+G+ TP+Q A+P + GKD+ QA+TG+GKTAAFG+ Sbjct: 1 MVKFTELN-LTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +++ I + Q LV+ PTRELA QVA EL R+ + + + + + GGQ F Q +L+ Sbjct: 60 MVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALE 118 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 PHI+V TPGRLL+H+++ V + V+DEAD+MLDMGF D + +++ P RQT Sbjct: 119 ELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQT 178 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT + ++ + +DP IE + +P Q + E K K L RLL Sbjct: 179 LLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQE 238 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P +VF T+ + AL E G AL LHGDL Q R+ TL +F G +LVATD Sbjct: 239 KPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATD 298 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI+ + V NF++ DP+ +VHRIGRT RAGN+G A +F P++ I Sbjct: 299 VAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQA 358 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + ++ + P + E I G + + A + D A I A Sbjct: 359 IDHQITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDYAESLLNSGDPATILAAA 418 Query: 420 V--------HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCR 452 + P + + VA + GK G + Sbjct: 419 LRILSKAEEKPQIRLTEIPEPVAPDRKAEKGHGKGTGHPKK 459 >UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromonadales RepID=B4RRN6_ALTMD Length = 459 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 196/449 (43%), Positives = 275/449 (61%), Gaps = 2/449 (0%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 + PA L+ G ++P+QA +LP L GKDV QA+TGSGKT F + L++I+ + Sbjct: 11 INPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPALEKIEVND 70 Query: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129 F TQA++LCPTRELA+QVA + R A+ + N K+ TLCGGQP G Q SL+H+PHIIV T Sbjct: 71 FSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKHSPHIIVGT 130 Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189 PGR++DH++K + L + V+DEADRMLDMGF D + + P QTLLFSAT+ E Sbjct: 131 PGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFSATFTE 190 Query: 190 AIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 I ++ + +P+ +++S + P I Q Y + L+ +L+ +QP + +VFCN Sbjct: 191 QIERVAKQYLHNPVTCKVESQENKPAITQLGYNVLPHTRTQALKAVLTEYQPKNAIVFCN 250 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 K V D L E G SA L GD+EQ R L++FA+ S +VLVATDVAARGLDI Sbjct: 251 RKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTSVLMQFASDSLQVLVATDVAARGLDIDD 310 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTP 369 + V+N+ ++ +PE H+HRIGRTARAG G+AI+ + EE I + + + + Sbjct: 311 VACVINYTVSEEPETHIHRIGRTARAGAKGMAITLVSEEEEHFLRKIEVLQESDIPLKGA 370 Query: 370 PANSSIATL--EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYV 427 + + E + + GKK K+RPGD++GALT D G+ G D+GKI V + +V Sbjct: 371 QSLRFHKNKITQPEFTCISLSAGKKEKLRPGDLVGALTKDAGIPGDDLGKIKVQNSMSFV 430 Query: 428 AVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 AV+ KA Q + GKIKGK R R L Sbjct: 431 AVKTRSVKKAMTQFREGKIKGKRIRARKL 459 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 134/352 (38%), Positives = 200/352 (56%), Gaps = 10/352 (2%) Query: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG---LLQQIDASLF-QTQ 73 + + G+ TP+QA + P L +D+ AKTGSGKT + + LL+++ + Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 305 Query: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133 LVL PTRELA Q+ E ++ R + L GG P G Q L+ I+VATPGRL Sbjct: 306 VLVLSPTRELATQIQDEAKKFGRS-SRISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 364 Query: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193 D L+ VSL ++ LV+DEADRMLDMGF I +++ RQTL+F+ATWP+ + Sbjct: 365 NDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRK 424 Query: 194 ISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS-SCVVFCN 249 I+ + +P+ + I +TD A I Q + K L ++L +P ++FC+ Sbjct: 425 IASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCS 484 Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 TK+ C + L A ++HGD Q +RD L F +G +LVATDVAARGLDIK Sbjct: 485 TKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKD 543 Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 + +VVN++ E +VHRIGRT RAG +G+A +F ++++ A+ + +L+ Sbjct: 544 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 595 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 154/457 (33%), Positives = 240/457 (52%), Gaps = 4/457 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F LN+L P L +NE+GY+T TP+Q+ A+P++LAGKDV +A+TG+GKTAAFGL LL Sbjct: 9 FDQLNLLAP-VLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLS 67 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++DA L Q Q LV+CPTRELA QVA L A+ + + T+ GGQ + Q L P Sbjct: 68 RLDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARGP 127 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 I+V TPGR++DH++KG + LD L V+DEAD ML+MGF + I+ ++ P Q F Sbjct: 128 QIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAFF 187 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I I+ + DP+ ++I + P I Q+ + GK L+R+ + Sbjct: 188 SATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDYD 247 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF T+ D + + L G A +L+GD++Q+DR++ + + NG +L+ATDV A Sbjct: 248 AMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVVA 307 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + V+N++L D E +VHRIGRT RAG G AI F + E + + + + + Sbjct: 308 RGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERITEG 367 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIAV 420 K+ P + E + + ++ + ++ + Sbjct: 368 KIEVFDMPTAEQLGQARIERTQAALVKAMEVNDLANFQAIVSQMAEQSNTTPLELAAALL 427 Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 + + + G+ R + Sbjct: 428 FDRQIALPFHPKADPVEREFAARSDRGGRDRNDRFDR 464 Score = 58.0 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 E T + G+ +RPGD++GA+ +I +D DIG+I + +V + + + A+ Sbjct: 483 NGEFDTYRFNVGRTHGVRPGDIVGAVANEIKIDSNDIGQIRLFDGFTHVDLPKNMPKPAF 542 Query: 439 KQLQGGKIKGKTC 451 ++LQ I+ Sbjct: 543 EKLQQVLIRKHKI 555 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 152/461 (32%), Positives = 242/461 (52%), Gaps = 8/461 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKD-VRVQAKTGSGKTAAFGL 59 MT F + L L+ ++ GY TP+Q +P +L+GK+ V QA+TG+GKTAAFG+ Sbjct: 1 MTKFQQMG-LSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L++++D QALVL PTRELA QV E+ L + +L + GG G Q +L Sbjct: 60 PLIERLDEKANDVQALVLTPTRELALQVCNEIDSL-KGNKRLNLLPVYGGVSIGNQIRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGR++DHL +GT+ + + LV+DEAD MLDMGF + ++ ++ +Q Sbjct: 119 KRRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQ 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD----ALPPIEQQFYETSSKGKIPLLQRL 235 L+FSAT P+ I ++ + + + + + +Q +Y S KI LL RL Sbjct: 179 ILMFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRL 238 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + + +VF TK + + + L + G A +L+GD+ Q R++ + RF + ++L Sbjct: 239 IDIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKIL 298 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 ++TDVAARG+DI +L+ V+N+ L +PE ++HRIGRTARAGN G AI+F P E +R Sbjct: 299 ISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMF 358 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 I + + P I + E I + P + A T D Sbjct: 359 IKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIYEILAETILEETDQEPS 418 Query: 416 GKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 IA + Y + + + K+++ K K R+ + Sbjct: 419 QIIASILKYFYGGILKEENYNKIKEVKNSS-KSKDQRLFVA 458 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 152/424 (35%), Positives = 239/424 (56%), Gaps = 6/424 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F + L P + ++++ Y T +QA A+P ++ G DV ++ TG+GKTAAFG+ Sbjct: 4 TKFEDIG-LSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPA 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++I++ L Q LVL PTRELA Q+A E+R+ A++ P + + GG P Q +L+ Sbjct: 63 VERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALRA 122 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 +I++ TPGR++DH+++ T+ LD L T+V+DEAD ML+MGF D I ++ P +RQT+ Sbjct: 123 -ANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P AI I+ + DP ++I + +EQ FY K+ L LL H Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLLQYHD 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P VVFCNTK ++ + L++ G AL +HGD++Q R Q + F +G R+LVATDV Sbjct: 242 PKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDV 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA-PEEAQRANIISDM 359 AARG+D++++E V NF++ + E ++HRIGRT RAG +G++ + + + Sbjct: 302 AARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQLRRF 361 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGK 417 + + P I + E + +A + G+ L A+ + G D DI Sbjct: 362 INADIREAPLPIGDEIVRKKREKFAARVARTLEADEYGKWGEQLDAIAAERGCDMRDIAC 421 Query: 418 IAVH 421 Sbjct: 422 ALAQ 425 Score = 53.7 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%) Query: 352 RANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 A +I+ + + PA L D G+ + P + + A+ GL Sbjct: 423 LAQMIAARDKKLIPVLKIPAPGERPVRGGRRVVLRADAGRAQNVTPANFVAAIADASGLP 482 Query: 412 GADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG 448 IGKI + + + + A + ++ +I+G Sbjct: 483 ARAIGKIDIFEDSSLIELYENDALTVLEAMRSTRIRG 519 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 175/477 (36%), Positives = 258/477 (54%), Gaps = 25/477 (5%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F + + L ++ LGY T VQ +PA+L+GK++ VQ++TGSGKTA+FG+ + Sbjct: 4 TFKNYGI-DDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPIC 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Q++ + Q LVL PTRELA Q+ +L L RF K+ L G F Q L+ Sbjct: 63 HQVEWKKRKPQVLVLAPTRELAIQIQEDLFNLGRF-KRLKVEALFGRSSFEKQAQRLKEM 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+VATPGRLLDH+ + TV L + TLV+DEAD M +MGF D I +I P Q LL Sbjct: 122 THILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT PE + + ++P I+I++ + I++++Y K+ LL+ +L P Sbjct: 182 FSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITENP 241 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S ++FCNTK+ ++V + + ++G +LHG +EQR R + L F +G R LVATDVA Sbjct: 242 DSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATDVA 301 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLDI + LVVNF++ + E + HR+GRTAR G A++F +P E + N+I + Sbjct: 302 ARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIINDTD 361 Query: 362 IKLNWQTPPANSSIATLE----------------------AEMATLCIDGGKKAKMRPGD 399 +L P S + E+ + I+ GKK KMRP D Sbjct: 362 HELQKVVKPGQSLVDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKKTKMRPVD 421 Query: 400 VLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 V+GAL G++ DIG I++ +V + L+ IKG+ +V Sbjct: 422 VVGALCSIEGMNAEDIGVISIVDVSTFVEILNGKGDLVLNALKTMPIKGRPRKVNRA 478 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 127/427 (29%), Positives = 194/427 (45%), Gaps = 38/427 (8%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F P + + Y T T +Q+ P L+G+D+ A+TGSGKT A+ L Sbjct: 114 ILTFQE-GCFPDYCMKMIETQNYTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYILP 172 Query: 61 LLQQIDASL-----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I ALVL PTRELA Q+ + + + GG P G Q Sbjct: 173 AIVHITHQPYLQRGDGPMALVLAPTRELAQQIQQVAADFGKA-SRIRNTCVFGGAPKGSQ 231 Query: 116 RD------SL-------------------QHAPHIIVATPGRLLDHLQKGTVSLDALNTL 150 +L + I +ATPGRL+D L+ G V+L L Sbjct: 232 LRDWREFGALCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYL 291 Query: 151 VMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST 210 V+DEADRMLDMGF I ++ QTL++SATWP+ + +++ +D + + I + Sbjct: 292 VLDEADRMLDMGFEPQIRKIVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGAL 351 Query: 211 D--ALPPIEQQFYETSSKGKIPLLQRL---LSLHQPSSCVVFCNTKKDCQAVCDALNEVG 265 A I Q K L L + Q + ++F TKK + + G Sbjct: 352 QLCANHRIVQIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNG 411 Query: 266 QSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH 325 ++ +HGD Q +RD L F +G + +LVATDVAARGLD+ + V+N++ E + Sbjct: 412 WPSICIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDY 471 Query: 326 VHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATL 385 +HRIGRTAR+ +G A +F P ++A + +L+ + N P IA + + Sbjct: 472 IHRIGRTARSNKTGTAYTFFTPGNMKQAKELIAVLK-EANQAINPKLFEIANMARNNSYG 530 Query: 386 CIDGGKK 392 + Sbjct: 531 GGRNSES 537 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 131/383 (34%), Positives = 204/383 (53%), Gaps = 3/383 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F N L P + +GY+T TP+Q A+P++++G+DV A+TG+GKTAAFGL +L Sbjct: 3 FKQFN-LHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLH 61 Query: 64 QI-DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++ + LVL PTRELA+Q+ L + + + +T+ GG Q L+ Sbjct: 62 RLVQEERGHVRGLVLAPTRELAEQINDALNGMGKQT-RLRSVTVYGGVNINTQIKKLKEG 120 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+VA PGRLLDH+ +GT+ L + LV+DEAD+M DMGF + ++R P RQ L+ Sbjct: 121 AEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM 180 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 FSAT P+ I ++ + R+P+ +++ T + Y K PLL +L Sbjct: 181 FSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F TK + V + L + G A SL G+L Q R L F +G+ +++VATD+AA Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ + V+N+++ PE + HRIGRT RA +G A + E+ I +L Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGT 360 Query: 363 KLNWQTPPANSSIATLEAEMATL 385 K+ + + Sbjct: 361 KIERRRIEGFDYAVPAPQKDTEF 383 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 149/468 (31%), Positives = 243/468 (51%), Gaps = 20/468 (4%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L P L + GY T +P+QA A+PA+L G ++ A+TG+GKTAAF L LL Sbjct: 125 TFDDLG-LSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLL 183 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +I+ + +T LVL PTRELA QV+ +++ A + N ++ + GGQ +Q +L+ Sbjct: 184 SRINFNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRK 243 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 I+VATPGRL+DH+++G++SL A+ +V+DEAD MLDMGF + ++ +++ PA Q L Sbjct: 244 ASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRAL 303 Query: 183 FSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+++ I + + I T + I Q++ ++ KI L R+L + Sbjct: 304 FSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEF 363 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++F TK++ V + L G + L+GDL Q R++T+ R G ++VATDVA Sbjct: 364 DGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVA 423 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ + LVVN+++ +D E +VHRIGRT RAG SG AI F P E + I + Sbjct: 424 ARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEKATR 483 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDG--GKKAKMRPGDVLGALTGD------------ 407 ++ P + I+ + + + +++ AL + Sbjct: 484 QPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRALAAEGCNMKDGVALED 543 Query: 408 ---IGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIK-GKTC 451 + DI + + + + + K++ G+ Sbjct: 544 GSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDF 591 Score = 60.7 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 + +E + G+ + P D++GA+ G+ ++ ++IG+I + Sbjct: 608 KRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNIGRIKLFDKF 667 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 V + + L I+G R R++ Sbjct: 668 STVELPNTLPQDVLDILSEMTIRGNDARFRVM 699 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 149/429 (34%), Positives = 233/429 (54%), Gaps = 11/429 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F + L +L+ GY TP+Q AA+P ++ G+D+ QA+TG+GKTAAF L L Sbjct: 51 NGFLDFG-FNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL 109 Query: 62 LQQIDASLF-QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++++ + + LV+ PTRELA QVA + + N K + + GG + Q +L+ Sbjct: 110 IEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALK 169 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 ++V TPGR++DH+++GT ++++N LV+DEAD ML+MGF + I+ +I P ++Q Sbjct: 170 RKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQM 229 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P I I+ + DP I I S I Q+F K+ L+R+L L+ Sbjct: 230 VLFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELN 289 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++F TK ++ +AL +G S L+GD+ Q R+ T+ R G +LVATD Sbjct: 290 NEG-VIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATD 348 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ ++LVVN++ +D E + HRIGRT RAG SG AI F E + + Sbjct: 349 VAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENS 408 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDG-------GKKAKMRPGDVLGALTGDIGLDG 412 + K+ P+N I E ++ ++ K DVL L +D Sbjct: 409 TRTKIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMDD 468 Query: 413 ADIGKIAVH 421 ++I A++ Sbjct: 469 SNIAMAAIN 477 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 148/418 (35%), Positives = 212/418 (50%), Gaps = 13/418 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F L ++ P L L+ GY TP+Q A+P +L +D+ A+TG+GKTAAF + Sbjct: 26 ILSFEQLGLIEP-LLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIP 84 Query: 61 LLQQIDASL--------FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 LLQ + +AL+L PTRELA Q+ +FL + K L + GG Sbjct: 85 LLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFL-DLKSLVIFGGVSQ 143 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q ++L+ I++ATPGRLLD + + ++L + V+DEADRMLDMGF + VI Sbjct: 144 HPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIV 203 Query: 173 FAPASRQTLLFSATWPEAIAAISGRVQ-RDPLAIEIDSTD-ALPPIEQQFYETSSKGKIP 230 P RQ+L FSAT P I ++ + +P +E+ I Q Y + K Sbjct: 204 KLPEQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRN 263 Query: 231 LLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 LL +L + +VF TK V L++ +A ++HG+ Q R + L F + Sbjct: 264 LLLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQ 323 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 RVLVATD+AARG+DI L VVN+EL PE +VHRIGRT RAG G+AISFC PEE Sbjct: 324 QTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEK 383 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDI 408 I ++ ++ +T A A K + P D G + + Sbjct: 384 AFLKDILKLISREIPVET-EHPFHNGDSMALPAPKPAPQQKPKQQHPRDKKGGFSRNR 440 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 148/409 (36%), Positives = 213/409 (52%), Gaps = 10/409 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L + +GY T TP+Q ++P++L GKD+ A+TG+GKTAAF L +L Sbjct: 2 KFEEL-PLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60 Query: 63 QQID-----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q++ S +AL+L PTRELA QV R A+F + GG Q+ Sbjct: 61 QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTA-ISTACIFGGVNDNPQKQ 119 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L ++VATPGRLLD + + +SL L V+DEADRMLDMGF I V+ P Sbjct: 120 KLIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQD 179 Query: 178 RQTLLFSATWPEAIAAISGRVQR-DPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRL 235 RQ L FSAT PE I+ ++ + R +P+ +E+ + I Q+ Y + K LL+ L Sbjct: 180 RQNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKEL 239 Query: 236 LSLH-QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L+ H + +VFC TK + L + G ++HG+ Q R + L F RV Sbjct: 240 LAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRV 299 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ + V N++L + E VHRIGRTARAG G+AISFC+P+E Sbjct: 300 LVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLR 359 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA 403 I + ++K+ ++ + E A + + R A Sbjct: 360 GIEKLTRVKIPEGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARA 408 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 28/480 (5%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L + L+ L Y+ TP+Q +P L GKD+ ++KTGSGKTAAF + + Sbjct: 4 NKFTQYK-LCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPI 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + I QALVL PTRELA QV E+ + R + K+ + GG PF Q +L+ Sbjct: 63 CESIVWEENLPQALVLEPTRELAYQVKDEIFNVGR-MKRVKVPVVFGGFPFDKQALTLKQ 121 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 HI+V TPGR+LDH + GT+ + +++DEAD MLDMGF D + ++ + P + + Sbjct: 122 KSHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIM 181 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT EA+ A++ P+ ++++ T+ + IEQ + + K L R+L + Sbjct: 182 LFSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNN 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P++ ++FC T++ + + L + LHG ++Q+ R T+ F G R L+ATDV Sbjct: 242 PTNAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDV 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D + V+N++L E +VHRIGRT R G SG AISF EE + ++I Sbjct: 302 AARGVDFDDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFT 361 Query: 361 QIKLNWQTPPANSSIAT------------------------LEAEMATLCIDGGKKAKMR 396 + TPP+ + + ++ L I GG+K+K+R Sbjct: 362 GTPIEIVTPPSEEEVREFLYKEKFNEAQQKKQERKKKKGDVFQKDIMKLTISGGRKSKLR 421 Query: 397 PGDVLGALTGDIGLDG-ADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRL 455 +V+G ++G G++G DIG I + + YV + + +L +KGK +V + Sbjct: 422 TCEVVGTISGIEGVNGKEDIGVIDIRDSITYVEILNGKGNLVLNELPKRTMKGKCRKVSI 481 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 151/406 (37%), Positives = 222/406 (54%), Gaps = 10/406 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F + P + L E GY+T TP+QA A+P + G+D+ A+TG+GKTAAF L Sbjct: 1 MTQFVDFGLAAP-IMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALP 59 Query: 61 LLQQIDAS-------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFG 113 +L ++ + + LVL PTRELA Q+A R +FLP + GG G Sbjct: 60 ILHRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLP-FSTTVVFGGVTIG 118 Query: 114 MQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF 173 Q +L + ++VATPGRLLD + + ++SLD++ LV+DEAD+MLD+GF A+ ++ Sbjct: 119 RQERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTL 178 Query: 174 APASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLL 232 P +RQ+L FSAT P+ IA ++ + RDP+ + + +EQ+ S+ K LL Sbjct: 179 LPKARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALL 238 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 +L +VF TK V L +VG + ++HG+ Q R++ L F G+ Sbjct: 239 GTILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 RVLVATD+AARG+D++ + VVNF+L PE +VHRIGRTARAG GLAISFC EE Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAY 358 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 I + + K+ P + + + + + P Sbjct: 359 LRDIERLTRQKVPEMAIPVGFVPPSRQEAAEAVAEAERDRRQPGPR 404 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 145/433 (33%), Positives = 231/433 (53%), Gaps = 8/433 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F L L + L + +LG+ + VQ A+P +L D+ A+TG+GKTAAFG Sbjct: 1 MNKFEQLG-LNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGF 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q+IDA TQALVL PTREL Q+ EL+ +++ ++ + GG Q + Sbjct: 60 PLIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREI 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + IIVATPGR+ D + +G V++ ++ ++DEAD ML+MGF + I ++ P + Sbjct: 120 KRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT P+ +A I+ + +P+ I + + ++ + +FY +++ + L+RL Sbjct: 180 TWLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + VVFC TK+D QAV + L E G SA +LHGDL Q RD + F ++LVAT Sbjct: 240 NPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ ++ VVN++L + E + HR GRT RAG G +I E ++ + I Sbjct: 300 DVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIER 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 +++ K + P+ I ++ L + K ++ L + D+ K Sbjct: 360 IIKQKFEEKAIPSGIEICEIQ----LLHLANKIKDTEVDHEIDNYLPAINNV-LEDLSKE 414 Query: 419 AVHPAHVYVAVRQ 431 + V V + Sbjct: 415 ELIKKMVSVEFNR 427 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 143/429 (33%), Positives = 223/429 (51%), Gaps = 4/429 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L LP L+ + ELG+ T +QAAA+P +L G+DV A+TG+GKTAAF L LL Sbjct: 129 FDDLG-LPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLA 187 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ID + QALVL PTRELA Q A + A + + GG + Q +L+ Sbjct: 188 HIDPEKREVQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEGGA 247 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGR++D + +G + LDA+ V+DEAD ML MGF++ ++ + P R + LF Sbjct: 248 QVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISALF 307 Query: 184 SATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P I ++ R D + I + ++Q + + KI L R+L++ + Sbjct: 308 SATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEAQ 367 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF T+ + + L G + +L GD+ Q++R++ + R +G+ VLVATDVAA Sbjct: 368 AALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVAA 427 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + LVVNF++ + + +VHRIGRT RAG +G +I+F P+E R I Sbjct: 428 RGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIEKQTGS 487 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR--PGDVLGALTGDIGLDGADIGKIAV 420 ++ P + ++ L A ++L + A G A Sbjct: 488 RMEQIELPTPAEVSKLRARRTVEQAMARVAKGRLWVYEEILEDFVAEQAKAAAQSGSGAH 547 Query: 421 HPAHVYVAV 429 +H + + Sbjct: 548 LDSHEHGSD 556 Score = 59.5 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 365 NWQTPPANSSIATLEAEMATL-CIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 + P + + + ++ G K +++PG ++GALT + GL G+D+G I + P Sbjct: 617 EREGRPRKERQPRRQMKNSVRYRVEVGHKDRVKPGAIVGALTHEGGLSGSDLGHIDIFPT 676 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 V + ++ +A K++ ++ G+ ++ + Sbjct: 677 FSLVEIGVPLSPEARKRISQARVSGRALKISEDR 710 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 141/400 (35%), Positives = 207/400 (51%), Gaps = 27/400 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +FS + + + N+ Y TPVQ A+P I +D+ A+TGSGKTAAF L Sbjct: 179 IESFSDV-EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLP 237 Query: 61 LLQQIDASLFQ------------------TQALVLCPTRELADQVAGELRRLARFLPNTK 102 +L QI + +LVL PTRELA Q+ E R+ + + + Sbjct: 238 ILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVR 296 Query: 103 ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMG 162 + GG G Q L+ H++VATPGRL+D +++G + LD LV+DEADRMLDMG Sbjct: 297 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG 356 Query: 163 FSDAIDDVIRF--APAS--RQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIE 217 F I ++ P R T++FSAT+P+ I ++ + + + + I Sbjct: 357 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 416 Query: 218 QQFYETSSKGKIPLLQRLLSLHQPSS-CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE 276 Q+ K L LL+ S +VF TKK ++ D L G + S+HGD Sbjct: 417 QKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRS 476 Query: 277 QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAG 336 QRDR++ L +F +G + +LVAT VAARGLDI +++ V+NF+L D E +VHRIGRT R G Sbjct: 477 QRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 536 Query: 337 NSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIA 376 N GLA SF + D+L ++ + P ++A Sbjct: 537 NLGLATSFFNERNINITKDLLDLL-VEAKQEVPSWLENMA 575 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 145/373 (38%), Positives = 202/373 (54%), Gaps = 7/373 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L ++ P L + GY TP+Q A+P IL G D+ A+TG+GKTAAF L +LQ Sbjct: 3 FADLKLIEP-LLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQ 61 Query: 64 QID----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + LVL PTRELA QVA + L + + GG Q ++L Sbjct: 62 RLAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNL-GLRTAVVFGGVGQRPQMEAL 120 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGRLLD +G L+TLV+DEADRMLDMGF I V+ P RQ Sbjct: 121 RRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQ 180 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P I ++ + R P+ +E+ I+Q+ K +L+ +L Sbjct: 181 TLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKD 240 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VF TK V L+ A+++HG+ Q R++ L F G+ VLVAT Sbjct: 241 PALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVAT 300 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 D+AARG+DI + V+N++L PE +VHRIGRTARAG SG+A+SFC EE I Sbjct: 301 DIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADIER 360 Query: 359 MLQIKLNWQTPPA 371 ++Q +L P Sbjct: 361 LIQKRLPLLADPG 373 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 150/446 (33%), Positives = 235/446 (52%), Gaps = 12/446 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILA-GKDVRVQAKTGSGKTAAFGL 59 M F+ L L P L G+ +P+Q A+P +L+ D+ QA+TG+GKTAAFGL Sbjct: 1 MDKFTALG-LEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++Q+I+ L + QAL+LCPTRELA QV E++ + +TL GG P Q+ +L Sbjct: 60 PIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKG-RGITTVTLYGGAPIMDQKRAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGR + ++ G + LD+L LV+DEAD ML+MGF + ++ V++ +P R Sbjct: 119 KKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRT 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 L+FSAT P + I+ + + I+ S + I+Q YE + K L R++ L Sbjct: 179 VLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDL 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC TK + + V L G +A +HGD+ Q R++ L RF N + +L+AT Sbjct: 239 EKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L +VNF L E +VHRIGRT RAG +G AI+ P+E + + I Sbjct: 299 DVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIEK 358 Query: 359 MLQIKLNWQTPPANSS-----IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 K + P I L E+A + + ++ P + A + D + Sbjct: 359 KTGAKTERRKLPFGEEMIKLRIQKLSKELAHFQENNAELEELAPIKEVAAQLLE---DNS 415 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWK 439 + I + ++ A + Sbjct: 416 PVDIITALLSKIFGTKLDASNYPDIN 441 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 147/427 (34%), Positives = 234/427 (54%), Gaps = 6/427 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T FS L + L+E+G+ T +Q A+PAI +G DV +++TG+GKT AF + Sbjct: 4 TTFSEL-EINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPA 62 Query: 62 LQQIDASLFQT--QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ID + Q L++CPTRELA Q E+++L +++P K++ + GG Q L Sbjct: 63 IEKIDIEQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKL 122 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + HI++ TPGR+ DHL++ T+ L + +V+DEAD ML MGF + ID +++ AP +RQ Sbjct: 123 KK-AHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQ 181 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT P AI I ++PL I+ID + I Q + + K +L LL Sbjct: 182 TVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHY 241 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FCNTK+ + L + G SA LHGD+ Q +R + + F N +LVAT Sbjct: 242 YGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVAT 301 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE-EAQRANIIS 357 DVAARG+D+K +E V+N+++ + E ++HRIGRTAR G +G +I+ + +I Sbjct: 302 DVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMIL 361 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 K+ P + I + ++ I K + D + + D+G I K Sbjct: 362 KETNSKIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKDLGYSENQIAK 421 Query: 418 IAVHPAH 424 A++ Sbjct: 422 AALNLYF 428 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 552 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 134/394 (34%), Positives = 205/394 (52%), Gaps = 4/394 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ N L L +L + Y +P+Q +P +L G D+ A+TG+GKTA F L +L Sbjct: 2 TFNEFN-LRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60 Query: 63 QQIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + +AL+L PTRELA Q+ ++ R++ + + + GG P Q +++ Sbjct: 61 NSLSKEKNHSIRALILTPTRELATQIFENIKMFGRYM-HLRACCVYGGSPAAPQLKAIRS 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I++ATPGRLLD+L G +SL + LV+DEADRMLDMGF + +++ P R T Sbjct: 120 GCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITA 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I ++ + ++P + I++ I+Q T K +L LL+ Sbjct: 180 LFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTES 239 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VF TK + L E + L +HGD Q R L RF R+L+ATDV Sbjct: 240 IKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDV 299 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+DIK + V+NF+L D E +VHRIGRT RA G++IS EE I + Sbjct: 300 AARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANIESYI 359 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 Q ++ + + + + +++ KK + Sbjct: 360 QFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKER 393 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 141/396 (35%), Positives = 197/396 (49%), Gaps = 5/396 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + L + + N+ GY T TP+QA A+P ++ G D+ A+TG+GKTAAF L +L Sbjct: 2 SFDSF-CLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60 Query: 63 QQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + + L+L PTRELA+Q+ R + + GG Q +L Sbjct: 61 HRLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGT-RLRATVIYGGVGMFPQVRAL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +IVA PGRLLDHL +G V D L TLV+DEAD M DMGF I ++ PA RQ Sbjct: 120 RQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 TLLFSAT P AI+ ++ DP+ + I L +E Y S K PLL LL Sbjct: 180 TLLFSATMPPAISGLAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLLGEA 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 S +VF TK + + L G A L G+L QR R + F GS ++LVATD Sbjct: 240 GKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARG+D+ + VVNF++ E + HRIGRT RA G A +F E+ I Sbjct: 300 IAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIESH 359 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 ++ L + A + + Sbjct: 360 MKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQG 395 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 160/421 (38%), Positives = 235/421 (55%), Gaps = 4/421 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 TAFS L L + + L+ELG+ TP+Q ++P +L G+D+ QA+TG+GKTAAFGL L Sbjct: 3 TAFSALG-LSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPL 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 + + D + QALVL PTRELA QV + ++ ++L + GGQP Q L+ Sbjct: 62 VDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKH-SGVRVLPIYGGQPIDRQMRRLRA 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR+LD +++G++ L AL TLV+DEAD+MLDMGF + + ++ AP RQ + Sbjct: 121 GAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLV 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P +I ++ R R P+ + + + + P I Q+ Y + K + L R+L+ Sbjct: 181 FFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAED 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P+S ++F TK+ + + L + G A +LHGDL Q R+ L RF V+VATDV Sbjct: 241 PASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI L V+N+++ D E ++HRIGRT RAG +G+AISF P + R +I Sbjct: 301 AARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERAT 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA-DIGKIA 419 L P+ I E + +A ++ L D+G IA Sbjct: 361 GSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDPSLVLYREVVGQLREEFDLGDIA 420 Query: 420 V 420 Sbjct: 421 A 421 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 141/424 (33%), Positives = 215/424 (50%), Gaps = 7/424 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + P + +LGY T TP+Q +P L G+DV A+TG+GKTAAF L +L Sbjct: 2 SFDSF-RFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60 Query: 63 QQIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 Q++ +A+++ PTRELA+Q+ G + L ++ + +TL GG + Q L+ Sbjct: 61 QRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYT-GLRSVTLYGGVGYQGQIQRLRR 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I V PGRLLDHL++GT++L+ L+ L++DEAD+M DMGF + ++R APA RQT+ Sbjct: 120 GVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTM 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 LFSAT P+AI A++ R+P I+I + + + Y + K LL LL Sbjct: 180 LFSATMPDAIRALAREALREPQTIQIGRSAPVSTVTHAIYPVAEHLKTALLIELLRHTDT 239 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 S ++F TK Q + D L +G A +L G++ Q R L F +G ++LVATD+A Sbjct: 240 GSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDIA 299 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ + V+N+++ E + HRIGRT RA +G A + + I ++ Sbjct: 300 ARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLIG 359 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVH 421 L +T P A A A A R + D + Sbjct: 360 EPLKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHYE----PHSQDERDNRAPRRHDAQ 415 Query: 422 PAHV 425 Sbjct: 416 ERRS 419 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 145/371 (39%), Positives = 210/371 (56%), Gaps = 8/371 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L L + L+ L + GY T TP+QA A+P +L D+ A+TG+GKTAAF L Sbjct: 1 MTTFKDLG-LSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALP 59 Query: 61 LLQQIDAS-----LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L I ++ + LVL PTRELA Q+A + ++ L +I T+ GG +G Q Sbjct: 60 ILHHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGL-GLQIATIFGGVKYGPQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +LQ I+VATPGRL+DH+++ T+ L A+ LV+DEAD+MLDMGF I V P Sbjct: 119 YKALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQR 234 A RQ L FSAT P+ IA ++ + +P +EI + QQ + K LL Sbjct: 179 AQRQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSE 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L + + + ++F TK+ V L G A ++HGD Q R++ L F G R Sbjct: 239 LYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRA 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ ++ V+N+EL + E +VHRIGRTARAG G +I+ A +E + Sbjct: 299 LVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLK 358 Query: 355 IISDMLQIKLN 365 I + + ++ Sbjct: 359 DIERITRQRIP 369 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 138/419 (32%), Positives = 205/419 (48%), Gaps = 22/419 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ + L N+ Y+ TPVQ ALP I A +D+ A+TGSGKTAAF L Sbjct: 158 IKSFNDV-ELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLP 216 Query: 61 LLQQIDASLFQ-------------TQALVLCPTRELADQVAGELRRLARFLPNTKILTLC 107 +L + AL+L PTREL+ Q+ E R+ + + N K + Sbjct: 217 ILNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFS-YRSNIKPCVVY 275 Query: 108 GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI 167 GG Q L H +++VATPGRL+D + +G VSL+ + V+DEADRMLDMGF I Sbjct: 276 GGASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQI 335 Query: 168 DDVIRF--APA--SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYE 222 ++ P RQTL+FSAT+P+ I ++ + + + I Q+ Sbjct: 336 RRIVEQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLN 395 Query: 223 TSSKGKIPLLQRLLSLHQPS-SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRD 281 + K K +L RLL P +VF TK+ + L ++ S+HGD Q +R+ Sbjct: 396 VADKDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTERE 455 Query: 282 QTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLA 341 L F +G +L+AT VAARGLDI +++ V+NF+L D E +VHRIGRT R G G A Sbjct: 456 HALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSA 515 Query: 342 ISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV 400 SF + + + ++L+ PP + + A+ + V Sbjct: 516 TSFFSEKNQNVVRDLVELLRES-KQAVPPWLEARVAYPSGPASRRNKNINSNVNKKNRV 573 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 149/395 (37%), Positives = 212/395 (53%), Gaps = 8/395 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F ++ L A L L GY TP+Q A+P ++ GKD+ A+TG+GKTAAF L + Sbjct: 16 TTFESMG-LNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPI 74 Query: 62 LQQ-----IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L + I T+ LVL PTRELA Q+ + L ++ + GG +G Q Sbjct: 75 LHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHL-GFRVAVIFGGVKYGAQE 133 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +LQ I+VA PGRLLDH+Q+ + L + LV+DEAD+MLD+GF I ++ PA Sbjct: 134 RALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPA 193 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRL 235 RQ L FSAT P I ++G + +DP+ +++ + I Q K LL + Sbjct: 194 KRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEM 253 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 S + + C+VF TK V L G A ++HG+ Q R++TL F G RVL Sbjct: 254 FSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVL 313 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARG+D+ + VVNFEL PE +VHRIGRTARAG G AISF A +E + Sbjct: 314 VATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKD 373 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGG 390 I + + K+ + ++ L+A + + Sbjct: 374 IEKVTRQKIPAIDRRNDKALGQLDATIMATGVGKK 408 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 144/400 (36%), Positives = 209/400 (52%), Gaps = 27/400 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F + + + N+ Y TPVQ A+P I+ +D+ A+TGSGKTAAF L Sbjct: 220 IESFHDV-TMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLP 278 Query: 61 LLQQIDASLFQ------------------TQALVLCPTRELADQVAGELRRLARFLPNTK 102 +L QI A +LVL PTRELA Q+ E R+ A + + Sbjct: 279 ILSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFA-YRSRVR 337 Query: 103 ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMG 162 + GG G Q L+ H++VATPGRL+D +++G + LD LV+DEADRMLDMG Sbjct: 338 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG 397 Query: 163 FSDAIDDVIRF--APAS--RQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIE 217 F I ++ P RQT++FSAT+P+ I ++ + + + + I Sbjct: 398 FEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENIT 457 Query: 218 QQFYETSSKGKIPLLQRLLSLHQPSS-CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE 276 Q+ K L LL+ S +VF TKK A+ D L G + S+HGD Sbjct: 458 QKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRS 517 Query: 277 QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAG 336 QRDR++ L +F +G + +LVAT VAARGLDI +++ V+NF+L D E +VHRIGRT R G Sbjct: 518 QRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 577 Query: 337 NSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIA 376 N GLA SF + + D+L ++ + P ++A Sbjct: 578 NLGLATSFFNEKNINITKDLLDLL-VEAKQEVPSWLENMA 616 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 140/401 (34%), Positives = 210/401 (52%), Gaps = 4/401 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ +N++ P L + E G++ +P+Q +P +L G+D+ A+TG+GKTAAF L +L Sbjct: 2 NFNEMNLIKP-LLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60 Query: 63 QQIDASLF-QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 Q + +AL++ PTRELA Q+ ++ K + GG +Q +SL+ Sbjct: 61 QSLSKGEGSGVRALIITPTRELAIQIYESFECFGKYTS-LKQSVIYGGVGQSLQVNSLKA 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I++ATPGRL D + +G ++LDA+ V+DEAD+MLDMGF + I VI+ P +RQTL Sbjct: 120 GIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTL 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I +++ + +P I+I T + IEQ Y KI LL L+ H+ Sbjct: 180 LFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHK 239 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 S +VF TK V D LN+ ++HG Q R L F G +VLVATD+ Sbjct: 240 MSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDI 299 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+DI L VVN+++ E+++HRIGRT RAG G AI+ C ++ I + Sbjct: 300 AARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHI 359 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVL 401 + + I + + V Sbjct: 360 GMVIPEVPSKWPMLILEKTEKPVRGQRPENTTKNVGKESVK 400 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 131/389 (33%), Positives = 194/389 (49%), Gaps = 15/389 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + FS + LP + + GY T +QA P ++G + AKTGSGKT + L Sbjct: 280 IQDFSEV-HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP 338 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + I+ ALVL PTRELA Q+ + + GG P G Q Sbjct: 339 AIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSS-SYVRNTCVFGGAPKGGQ 397 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 LQ I++ATPGRL+D L G+ +L LV+DEADRMLDMGF I ++ Sbjct: 398 MRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR 457 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQTL++SATWP+ + ++ + + I I S + A I Q K L+ Sbjct: 458 PDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLK 517 Query: 234 RLLSL-----HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFA 288 LLS P ++F TK+ + + G ++HGD Q +RD L F Sbjct: 518 TLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFR 577 Query: 289 NGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE 348 +G + +LVATDVAARGLD+ ++ V+NF+ + E ++HRIGRT R+ G + +F Sbjct: 578 SGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKN 637 Query: 349 EAQRANIISDMLQIKLNWQTPPANSSIAT 377 A++A + D+L+ + N + PA ++A Sbjct: 638 NAKQAKALVDVLR-EANQEINPALENLAR 665 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 155/422 (36%), Positives = 228/422 (54%), Gaps = 4/422 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L L L LN+LGY +P+Q +P +L G DV A+TGSGKTAAF L LL Sbjct: 7 SFSELG-LKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLL 65 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID L Q ++L PTRELA Q+ L++++ I+ L GGQ + +Q SL+ Sbjct: 66 NNIDLKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSLKRN 125 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P I+V TPGR+LD L K ++L + + V+DEAD ML MGF + ++++ + QT+L Sbjct: 126 PQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQTIL 185 Query: 183 FSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI I+ R + P I I S + P I+Q ++ KI L R L + Sbjct: 186 FSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFLEVEIF 245 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + ++F TK V D L + G ++ SL+GD+ Q R++TL RF G +LVATDVA Sbjct: 246 DAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVATDVA 305 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ + LV+N+++ D E ++HRIGRT RAG +G A+ F E + I ++ Sbjct: 306 ARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNIERNIK 365 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKK--AKMRPGDVLGALTGDIGLDGADIGKIA 419 KL+ P+ + + I + ++L + IG+ I A Sbjct: 366 EKLSQIKLPSVELLCKKRLNNFSEKIKNQINSLDLNKYQNLLSKIISFIGISDVKIISAA 425 Query: 420 VH 421 + Sbjct: 426 LL 427 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 153/457 (33%), Positives = 235/457 (51%), Gaps = 8/457 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F L + + +L +G+ TP+Q ++P L G D+ QA+TG+GKT AFG+ Sbjct: 12 LQNFKELGI-SDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIP 70 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ Q+L+L PTRELA QVA +LR +R +++T+ GG P Q +L+ Sbjct: 71 LIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRG-QGVQVVTVFGGMPIERQIKALK 128 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA-SRQ 179 P I+V TPGR++DHL + T+ D ++TL++DEAD M++MGF D + ++ PA RQ Sbjct: 129 KGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQ 188 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT P+AI A+ + + P I +++ + P IE+ + K L + Sbjct: 189 TMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 248 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 HQP +VF TK+ + AL G A LHGD+ Q R + L +F N +LVAT Sbjct: 249 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 308 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V NF++ D E + HRIGRT RAG G+A++F P E I D Sbjct: 309 DVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 368 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 K++ PP + + ++ K + + D+ Sbjct: 369 ANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKKSESRLKRISTELLNEYNDVDLVAA 428 Query: 419 AVH---PAHVYVAVRQAVAHKAWKQLQGGKIKGKTCR 452 + A+ V V+ ++ + GK G R Sbjct: 429 LLQELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNR 465 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 130/372 (34%), Positives = 191/372 (51%), Gaps = 8/372 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + FS L L + E GY TP+Q A+P +L D+ A+TG+GKTAAF L Sbjct: 5 IETFSDLK-LDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALP 63 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 ++ + + Q ++LVL PTRELA QV ++ + + GG Q Sbjct: 64 MIHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQ-IRTAVIFGGVGQNPQ 122 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 ++ +++ATPGRL+D + + VSL L V+DEADRMLDMGF I +I + P Sbjct: 123 AKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLP 182 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQR 234 RQ L FSAT P I ++ + +P+ I++ + I Q T K LL Sbjct: 183 KRRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLH 242 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L ++F TK + + LN+ G +HG+ Q R + L F +G R Sbjct: 243 LFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRA 302 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+DI + V+N+E+ + PE +VHRIGRTARAG +G+AI+ +E Sbjct: 303 LVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIK 362 Query: 355 IISDMLQIKLNW 366 I ++ I + Sbjct: 363 DIEKVIGISIPV 374 >UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteobacteria RepID=B2SHR4_XANOP Length = 458 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 235/459 (51%), Positives = 296/459 (64%), Gaps = 4/459 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M FS L L PA ++ LGY +TPVQA +LP IL G DV QA TGSGKTAAFGLG Sbjct: 1 MNEFSAL-PLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLG 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 LLQ++D +L + QALVLCPTRELADQV +LR+LA +PN K++ L GG P G Q SL+ Sbjct: 60 LLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 HA-PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 PH++V TPGR+ + +K + L + TLV+DEADRMLDMGF + I ++ RQ Sbjct: 120 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LLFSAT+P+ I ++ + +DP+ I ++ D P I+QQF+E + + LL Sbjct: 180 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRF 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P S VVFCNT+K+ V +L E G SAL+LHGD+EQRDRD+ LVRF N S VLVA+D Sbjct: 240 TPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD++ L VVN+EL D E + HRIGRTARAG GLA+S AP E RA + Sbjct: 300 VAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQALEAE 359 Query: 360 LQIKLNWQTPP--ANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 L W P +A M TL IDGGK K+R GD+LGALTG+ GL GA IGK Sbjct: 360 QGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGK 419 Query: 418 IAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 IA++P YVA+ +A KA L GKIKG+ RV L Sbjct: 420 IAIYPTRSYVAIARAQVAKALAHLHAGKIKGRRFRVSKL 458 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 159/464 (34%), Positives = 227/464 (48%), Gaps = 12/464 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT FS L L P L + + GY T TP+QAAA+P LAG+DV A+TG+GKTAAF L Sbjct: 1 MTEFSELG-LSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLP 59 Query: 61 LLQQID---ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 L+ ++ A +ALV+ PTRELADQVA + A+ L GG FG Q Sbjct: 60 LIDKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTK-LSWALLIGGVSFGDQEK 118 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L +++ATPGRLLDH ++G + + + LV+DEADRMLDMGF I+ + + P Sbjct: 119 KLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPK 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKG---KIPLLQ 233 +QTL FSAT P I ++ + +DP+ IE I Q + S K L+ Sbjct: 179 KQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALR 238 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L+ Q + +VFCN K + V +L G A ++HGDL+Q R +TL F +GS + Sbjct: 239 ALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLK 298 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVA+DVAARGLDI ++ V N+++ + +VHRIGRT RAG SG+ P + + Sbjct: 299 ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGF 358 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 + + ++ + + S A G +A G Sbjct: 359 DKVVKLIGSTPTEEKLDLDYSGAVTIKREGDKRGGGRDRAPRGGDRERGRDRDRNRAPTE 418 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 A + V A + + RVR + Sbjct: 419 PSDVAAANLEAAITGVP---ATPVASTVMSDPPAKRPARVRKPR 459 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 204/388 (52%), Gaps = 12/388 (3%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 P + + + +P+Q+ A P +L+G D+ A+TGSGKT +F L + I+A Sbjct: 108 FPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQP 167 Query: 70 -----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 LVL PTRELA Q+ E R + K + GG QR LQ Sbjct: 168 TVKKGDGPIVLVLAPTRELAMQIERESERFGKSSK-LKCACIYGGADKYSQRALLQQGVD 226 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 +++ATPGRL+D L+ T +L + LV+DEADRMLDMGF I ++ RQTL+FS Sbjct: 227 VVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLMFS 286 Query: 185 ATWPEAIAAISGRVQRD-PLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLLS-LHQ 240 ATWP+ + ++ ++ P+ ++I + I+Q Y T KI L + L L Q Sbjct: 287 ATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLDCLTQ 346 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 ++F TKK C+++ LN+ G L++HGD Q+DRD + +F +G R+L+ATDV Sbjct: 347 KDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATDV 406 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA-PEEAQRANIISDM 359 A+RGLD+K + V N++ E +VHRIGRT RAG G A+SF ++ + + M Sbjct: 407 ASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKISREYVQM 466 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCI 387 L + P +A++ T Sbjct: 467 L-HDAKQEIPIDLLDLASINPRYRTQYK 493 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 156/443 (35%), Positives = 229/443 (51%), Gaps = 6/443 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 MT F L L L L G+ TP+Q +P +L G D+ QA+TG+GKTAAFGL Sbjct: 1 MTDFKELG-LSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ + + QALVL PTRELA QVA E+ L + ++L + GGQ MQ +L Sbjct: 60 PIIETAVENAKRVQALVLTPTRELAIQVADEINSL-KGKKRIRVLPVYGGQAIHMQLKAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++V TPGR++DHL++GT+ LD L+ V+DEAD M +MGF D + ++++ A R+ Sbjct: 119 KSGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P + I+ D I + + +P +Q F+E + + L R++ Sbjct: 179 TLLFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDA 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VF T+ D V L E G A +HGDL Q R++ L RF +LVAT Sbjct: 239 EPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L VVNF L DP+ VHR GRT RAG G+AIS AP E +R I+ Sbjct: 299 DVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 I + P + + +DG + + + A G + D+ + Sbjct: 359 SSGIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLLEGREPEDV--V 416 Query: 419 AVHPAHVYVAVRQAVAHKAWKQL 441 A H + +++ + Sbjct: 417 AALLKHAFGDELVESSYREINTV 439 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 142/424 (33%), Positives = 220/424 (51%), Gaps = 5/424 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L + + L +G+ TP+Q ++P L G D+ QA+TG+GKT AFG+ Sbjct: 1 MQNFKELGI-SDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 L++++ Q+L+L PTRELA QVA +LR ++ +++T+ GG P Q +L+ Sbjct: 60 LIEKVVGQ-QGVQSLILAPTRELAMQVAEQLREFSKGQK-VQVVTVFGGMPIERQIKALK 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS-RQ 179 P I+V TPGR++DHL + T+ ++TL++DEAD M++MGF D + ++ PA RQ Sbjct: 118 RGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQ 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 T+LFSAT P+AI + + + P I +++ + P I++ + K L + Sbjct: 178 TMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 HQP +VF TK+ + AL G A LHGD+ Q R + L +F N +LVAT Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLDI + V NF++ D E + HRIGRT RAG G+A++F P E I D Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 357 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + ++ PP + + + + P + D ++ Sbjct: 358 VNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVAS 417 Query: 419 AVHP 422 + Sbjct: 418 LLQE 421 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 155/386 (40%), Positives = 222/386 (57%), Gaps = 2/386 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L L P L L+ LGY T TP+Q+ A+ +L G DV A+TG+GKTAAF L LL Sbjct: 6 TFADLG-LAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLL 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +ID + + QALVLCPTRELA QVA + AR + N +L + GG Q +L+ Sbjct: 65 SRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQN 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P +IV TPGR++DHL++GT+ L L LV+DEAD ML MGF + ID ++ P +QT L Sbjct: 125 PQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTAL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I I+ + Q+DP+ IEI S L IEQ + K+ L R+L + Sbjct: 185 FSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDW 244 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++ ++F T+ +CQ + + L G +A +L G++ Q+ R+ L G +++ATDVA Sbjct: 245 NAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVA 304 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+DI+ + V+N+++ D + HRIGRT RAG SG AI FC P E + I + Sbjct: 305 ARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDIERATK 364 Query: 362 IKLNWQTPPANSSIATLEAEMATLCI 387 +L P+ + A + Sbjct: 365 SELIDYPMPSAEKLGEHRAAAFKSTV 390 Score = 68.4 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 40/74 (54%) Query: 384 TLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQG 443 T +D G++ + PG ++GA+ + G++G I I + V + + + ++QL+ Sbjct: 470 TYRLDVGRRDRAEPGSIVGAIANEGGIEGKFINNIDIKENFTLVDLPDGMPTEIFEQLKK 529 Query: 444 GKIKGKTCRVRLLK 457 ++KG+ +R+ K Sbjct: 530 TRVKGRPLNLRVWK 543 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 147/424 (34%), Positives = 219/424 (51%), Gaps = 5/424 (1%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT +F L L ++ L ELG+ T +Q A+P +L G DV Q++TG+GKTAA+ L Sbjct: 1 MTISFENLG-LSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+++D Q L+L PTRELA QVA L+ ILT+ GGQ Q SL Sbjct: 60 PILEKVDIQDPSVQVLILTPTRELAQQVAEALKDFT-VRRRLYILTVYGGQSIDRQIRSL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR++D +++ + LD+L V+DEAD ML MGF D + +++ P SR Sbjct: 119 ERGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRS 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSK-GKIPLLQRLLS 237 T FSAT P I + + + P+ I ++ T A P IEQ Y K LQ +L Sbjct: 179 TACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLE 238 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + P S ++F TK+ + L E+G HG+L Q R++ + RF +G +++VA Sbjct: 239 IEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVA 298 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLD++ L V+N++L + E ++HRIGRT RAG +G AIS + + I Sbjct: 299 TDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIE 358 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGK 417 L+ K++ P S + I + + D I Sbjct: 359 RKLRQKIDICKIPNRSEVEAKRLGKLQNLIKESLIGERMASFLPLVSELSTEYDSQAIAA 418 Query: 418 IAVH 421 A+ Sbjct: 419 AALQ 422 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 144/395 (36%), Positives = 223/395 (56%), Gaps = 3/395 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F+ N L P L + ELGY + T +Q +P IL+ +D+ A+TG+GKTAAF L Sbjct: 1 MNLFTETN-LSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ID + + Q LVLCPTREL Q++ +++ ++++ + K + GG Q SL Sbjct: 60 PILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + P IIV TPGR++D + + + A++ LV+DEAD ML MGF D ++ ++ P ++Q Sbjct: 120 KDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT + + IS P I + S + + I ++Y + K L+RL+ Sbjct: 180 TFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + Q V D L + G +A +LHGDL Q RD + +F + +LVAT Sbjct: 240 NPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ SL V++F L DPEV VHR GRT RAG G++++ PEE+++ I Sbjct: 300 DVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKS 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 +I+++ +T P I + + + Sbjct: 360 ATKIEIHERTIPTGDDIIKAQVGGVFEKLLTEHED 394 Score = 43.7 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 377 TLEAEMATLCIDGGKKAKMRPGD----VLGALTGDIGLDGADIGKIAVHPAHVYVAVRQA 432 + M + GKK ++ D + A G A+IG I + + V ++ Sbjct: 478 RRDENMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEVEKS 537 Query: 433 VAHKAWKQLQGGKIKGKTCRVRLL 456 +Q K KGK R + Sbjct: 538 FKDNVLSNIQSMKFKGKDMRAEVA 561 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 146/445 (32%), Positives = 211/445 (47%), Gaps = 30/445 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M +F L + L N+ + Y TPVQ ++P +L G+D+ A+TGSGKTAAF Sbjct: 199 MQSFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFP 258 Query: 61 LLQQI--DASLFQTQ-------------ALVLCPTRELADQVAGELRRLARFLPNTKILT 105 ++ ++ D Q ALVL PTRELA Q E R+ F + Sbjct: 259 IVMKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFC-FGTGIRTNV 317 Query: 106 LCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSD 165 L GG Q L IIVATPGRL D + +G V+L + L++DEADRMLDMGF+ Sbjct: 318 LYGGSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAP 377 Query: 166 AIDDVI--RFAPAS---RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQ 219 I +++ P S RQT++FSAT+P I ++ + + + + A I Q+ Sbjct: 378 QIREIVEDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQR 437 Query: 220 FYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRD 279 K LL +LL VVF K+ + D L + A+S+HGD Q++ Sbjct: 438 VVYAEEDHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQE 497 Query: 280 RDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSG 339 R+ L F +G +LVATDVAARGLDI ++ V+N ++ + + +VHRIGRT RAGN+G Sbjct: 498 REHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTG 557 Query: 340 LAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 LA SF + L+ P + + G + G Sbjct: 558 LATSFVNESNKPILRDLLAALEES-GQDAPEWFQDMVK-----SCTASFGRYGNRFNKGG 611 Query: 400 VLGALTGDIGLDGADIGKIAVHPAH 424 V + G+ GL G + + Sbjct: 612 VSSSQRGNRGLHS--FGSVDIRSNQ 634 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 150/442 (33%), Positives = 232/442 (52%), Gaps = 6/442 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F L L A + L + G+ TP+Q +P +L+G KD+ QA+TG+GKTAAFGL Sbjct: 1 MEKFRNLG-LSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ + QA+VL PTRELA QVA E+ R + T+ GGQP Q +L Sbjct: 60 PIIENVREGAGHVQAIVLTPTRELAMQVADEIISF-RGSRKVFVATVYGGQPMLPQLKAL 118 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR+LDH+++ T+ L +N V+DEAD M +MGF + + +++ A R+ Sbjct: 119 KRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRR 178 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P + I+ + D + + D P E F+E + + + L R++ Sbjct: 179 TLLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDA 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 +VFC T+ D V L E G A +HGDL Q R+ L+RF ++LVAT Sbjct: 239 QPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L VVNF L DP+ VHR+GRT RAG G+A++ P E + I+ Sbjct: 299 DVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYITK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + +++++ + P + ++ + +A + A G+D I + Sbjct: 359 ITKLRVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGKHLSYLDLAHELLEGVDP--IEAV 416 Query: 419 AVHPAHVYVAVRQAVAHKAWKQ 440 A H V +++ ++ Sbjct: 417 AALLKHSQGGVLDKRSYRKIEE 438 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 136/394 (34%), Positives = 199/394 (50%), Gaps = 12/394 (3%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 P L +L +T TP+Q P L+GKD+ +A+TGSGKT AF L I A Sbjct: 120 FPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQP 179 Query: 70 -----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 LVL PTRELA+Q+ E + + + GG P Q +L+ H Sbjct: 180 SLKYGDGPIVLVLAPTRELAEQIRQECVKFS-VESKIRNTCAYGGVPKSGQIYALKQGVH 238 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 I++A PGRL+D L++ +L + LV+DEAD+MLDMGF I ++ RQTL++S Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWS 298 Query: 185 ATWPEAIAAISGRVQRD-PLAIEIDSTDALP--PIEQQFYETSSKGKIPLLQRLLSL--H 239 ATWP+ + +++ + + P+ + + S I+Q+ Y KI L+ LL Sbjct: 299 ATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFR 358 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +VF TKK+ + AL G AL +HGD +Q +R L F G + +L+ATD Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATD 418 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VA+RGLDIK ++ VVNF+ E +VHRIGRT RAG G + +F ++ + A + + Sbjct: 419 VASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKI 478 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 L+ PP I+ A G Sbjct: 479 LRES-EQPVPPQLEKISYTSANNPRRNPYYGYGR 511 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 142/375 (37%), Positives = 195/375 (52%), Gaps = 5/375 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + L N+ LGY TP+QA A+P + G+D+ A+TG+GKTAAF L ++ Sbjct: 2 SFDSF-CLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60 Query: 63 QQIDA---SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ +AL+L PTRELA+Q+ L R + + GG Q +L Sbjct: 61 HRLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGT-RLRAAVIYGGVGMFPQTRAL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + IIVA PGRLLDH+ +G V DAL TLV+DEAD M DMGF I ++ P+ RQ Sbjct: 120 RQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 TLLFSAT P AI+ ++ DP+ + I L +E Y S K PLL LL Sbjct: 180 TLLFSATMPPAISGLAHETLTDPVTVRIGHMAPLSTVEHAIYPISHTQKAPLLLHLLEEA 239 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 S +VF TK + + L G A L G+L QR R + F GS +VLVATD Sbjct: 240 GKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVATD 299 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARG+D+ + VVNF++ E + HRIGRT RA + G A +F E+ I Sbjct: 300 IAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESH 359 Query: 360 LQIKLNWQTPPANSS 374 ++ L + Sbjct: 360 MKKPLPRREVEGFEP 374 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 150/382 (39%), Positives = 217/382 (56%), Gaps = 7/382 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN+ P L+ L GY TP+QA A+P L G+D+ + A+TGSGKTAAF + +L Sbjct: 45 TFTDLNIAKP-ILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVL 103 Query: 63 QQIDAS---LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + T+AL+L PTRELA QV +R ++ + + L GG P+ Q +L Sbjct: 104 DRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITAL 163 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +IVATPGRLLDH+ G V L +L LV+DEADRMLDMGF+D I D++R AP RQ Sbjct: 164 KKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQ 223 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSL 238 T++ SATW + I+ ++P + I A IE++ Y K LL +++ Sbjct: 224 TIMCSATWDGPVGKIAASFTKNPERVSIKVESAH--IEEKVYYCDDFDHKNRLLDKIVCH 281 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 ++F TK+ + + L E G A LHGDL Q R++ + NG ++LVAT Sbjct: 282 KDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVAT 341 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ +L V+N++L E +VHRIGR RAG +G+AIS C+ ++ + N I+ Sbjct: 342 DVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAINR 401 Query: 359 MLQIKLNWQTPPANSSIATLEA 380 L K+ T Sbjct: 402 YLDRKMEASVIEGMEPKKTYVP 423 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 143/418 (34%), Positives = 231/418 (55%), Gaps = 4/418 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M+ F L L L +LGY T +Q A+P I++ + D++ A+TG+GKTAAF L Sbjct: 1 MSTFLELG-LKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ +D++ QA++L PTRELA Q+ ++ ++LP+ K+ T+ GG Q SL Sbjct: 60 PILELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR +D +++ + L + LV+DEAD ML+MGF D +D V+ P ++Q Sbjct: 120 KRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT+P+ + +I+ P+ I + + ++Y + + + P L+R+ L Sbjct: 180 TLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADL 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+++ Q V D L + G SA +LHGDL Q RD + +F + ++LVAT Sbjct: 240 NPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N +L E + HR GRT RAGN+G++I +E + I Sbjct: 300 DVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEK 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALT-GDIGLDGADI 415 ++Q K P+ I + + + + + D L ++ GLD + Sbjct: 360 IIQKKFTEAKVPSGKDICQNQLMSLIDKVVNIEVNETQINDFLPSIYEKLEGLDREQL 417 Score = 44.5 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 2/81 (2%) Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 M I+ G+K + PG ++G + D +IG I + + + + K Sbjct: 454 NENMTRFFINIGRKDNLNPGKLIGLINEQNIGDKVEIGSIDILDTFSFFEIDKNFEDKTL 513 Query: 439 KQLQGG--KIKGKTCRVRLLK 457 + G++ + + K Sbjct: 514 EAFSSNQPDFDGRSVNIEITK 534 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 148/467 (31%), Positives = 233/467 (49%), Gaps = 21/467 (4%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L L L + ELGY TPVQAAA+P++L +D+ A+TG+GKTA+F L ++ Sbjct: 16 SFADLG-LSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 63 QQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + ++L+L PTRELA QVA + ++ + L GG P Q+ +L Sbjct: 75 DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHK-LSMSLLIGGVPMAEQQAAL 133 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ATPGRLLD ++G + L + LV+DEADRMLDMGF I+ + P SRQ Sbjct: 134 EKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQ 193 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P AI ++ R +P IEI I+Q+ E S + K L +L Sbjct: 194 TLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRA 253 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + + ++FCN K + + L + G S +HGD+ Q +R L RF NG VLVA+ Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 D+AARGLD+K + V NF++ P+ ++HRIGRT R G SG A++F P + + I Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEK 373 Query: 359 MLQIKLNWQ--------TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGL 410 ++ +++ + +++ +A+ K + L Sbjct: 374 LMGVEIPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTETPKKLPEDRL 433 Query: 411 DGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 D + + A + + + + + +R +K Sbjct: 434 DSVE-------SDFPKNQAPRNTASRPVSKARTQERALRPENLRRVK 473 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 141/401 (35%), Positives = 213/401 (53%), Gaps = 8/401 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 FS LN++ L GY T +Q A+P +L+G+D+ A+TG+GKTAAF + +L Sbjct: 2 KFSELNII-ERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60 Query: 63 QQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q+I + + QAL+L PTRELA Q+ ++ A++L T+ GG Q + Sbjct: 61 QKIYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNII-STTIYGGVSQKRQEE 119 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 +L+ +++ATPGRLLD + + +SL + LV+DEAD+MLDMGF + ++ P Sbjct: 120 ALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKK 179 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLL 236 RQT+LFSAT P+ I +S ++ +P I + T L I Q Y + K LL L+ Sbjct: 180 RQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLI 239 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 S +VF TK + L +G + +HG Q R++ L F G ++LV Sbjct: 240 YTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILV 299 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATD+AARG+DI++L+ V+NFEL PE ++HRIGRT RAG SG+A+S P E + + Sbjct: 300 ATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQV 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + K+ + E+ T + K Sbjct: 360 EKHINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEK 400 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 154/430 (35%), Positives = 245/430 (56%), Gaps = 11/430 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS ++ L+++G+ + TP+QA LP L G DV +A+TG+GKTAAF + +L+ Sbjct: 6 FSEFDISGD-INRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLE 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++A QAL++CPTREL QV+ E++R+ +++ K+L + GGQ G Q L+ Sbjct: 65 NLEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMK-VKVLAVYGGQSIGNQIAQLRRGV 122 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+IVATPGRL+DH+++GTV L ++T+V+DEAD ML+MGF D I+ ++ P RQT+LF Sbjct: 123 HVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLF 182 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT + I I+ + R+P + ++ + P I++ +++T + K+ LL +LS + Sbjct: 183 SATVSKPILRIARKYMRNPQVMRVEKKHS-PKIDEFYFKTREEDKVELLDWILSSNNIRM 241 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 ++FCNTK+ Q + LN +G SA +HGDL Q R++ + RF G +LVATDVAAR Sbjct: 242 GLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAAR 301 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 G+ + +E VVN++L ++ E +VHRIGRT RAG+SG + + E R I + Sbjct: 302 GIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKR 361 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 + P+ I + ++K + G DI + Sbjct: 362 IKQSNMPSPEEIRRGYEMDLREILRRNLESKTYSDSEILESLAGEGYSFRDI-------S 414 Query: 424 HVYVAVRQAV 433 H + V ++ Sbjct: 415 HALLDVLESS 424 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 146/420 (34%), Positives = 233/420 (55%), Gaps = 4/420 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + LP ++ELG+ T + +QA A+P +L G+DV A+TG+GKTAAFGL LL Sbjct: 85 SFDDI-ALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLL 143 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID SL + QALVL PTRELA QVA + A + ++ L GG P+G Q +L Sbjct: 144 AAIDPSLREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALARG 203 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DH+++ + LD + V+DEAD ML MGF++ +++++ +P +RQ L Sbjct: 204 AQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVAL 263 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P AI ++ +DP+ + + + + Q + + + L R+L+ Sbjct: 264 FSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLATSDA 323 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF T+ + V AL G A S+ GD+ Q++R++ + R +GS +VLVATDVA Sbjct: 324 EAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVA 383 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + LVVNF++ + E +VHRIGRT RAG SG A++F P E + I + Sbjct: 384 ARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIERATK 443 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP--GDVLGALTGDIGLDGADIGKIA 419 L P+ ++ + + +++G + +D ++ Sbjct: 444 QTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELYRELIGQFVAEHDIDPLELAAAL 503 Score = 60.7 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 357 SDMLQIKLNWQTPP------ANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGL 410 + KL P A E + + G RP ++GA+TG+ GL Sbjct: 520 EEFTGAKLGEDRSPRGDRDRGPREAAATERGYTSYKVGVGHTHGARPPGIVGAITGEGGL 579 Query: 411 DGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 G DIGKI + P V +R +++ + +++ K+ G+ R+ Sbjct: 580 HGKDIGKIQIFPHFALVQIRGSLSPEQMERISRAKVGGRELRI 622 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 140/411 (34%), Positives = 211/411 (51%), Gaps = 4/411 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L + +L +LG+ T +QA A+P +L+G+DV Q++TG+GKTAAF L +L Sbjct: 4 SFPELGISQERV-EHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +++D QA+VL PTRELA QV + + + L + GGQ Q L+ Sbjct: 63 ERLDPQQKAVQAIVLTPTRELAIQVHDAMAQF-VGNSGLRTLAIYGGQSIDRQMLQLKRG 121 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+V TPGR++D L++G + LD + V+DEAD ML MGF D ++ ++ AP RQT L Sbjct: 122 VHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTAL 181 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSK-GKIPLLQRLLSLHQ 240 FSAT P +I + + R P+ + ++ A P I Q Y K LQ +L + Sbjct: 182 FSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMED 241 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P + ++F T++ + L G S HGDL Q+ R++ L RF + R +VATD+ Sbjct: 242 PETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDI 301 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD+ L V+N++L E +VHRIGRT RAG G AI+ P E ++ I + Sbjct: 302 AARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHV 361 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLD 411 + + P + I + + + D Sbjct: 362 RQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYD 412 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 162/416 (38%), Positives = 240/416 (57%), Gaps = 4/416 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F L LP A L + LG+ T TP+Q AA+PA+L+G+D+ A+TG+GKTAAFGL LL Sbjct: 21 SFDDLG-LPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLL 79 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 +D L QALVL PTRELA QV+ + K+L + GG F Q L+ Sbjct: 80 AAVDPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLERG 139 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++D L++G++ LDAL LV+DEAD ML MGF++ +D ++ PA++Q L Sbjct: 140 AQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVAL 199 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I ++ R+P I + + + Q + + K L R+L+ Sbjct: 200 FSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSDA 259 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF T++ + V AL G +A S+ GD+ QR+R++ + R +G+ VLVATDVA Sbjct: 260 DAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVA 319 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD++ + LVVNF++ + E +VHRIGRT RAG +G A++F P+E R I + Sbjct: 320 ARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIERVTG 379 Query: 362 IKLNWQTPPANSSIATLE--AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 +L T P N+ +A A +AT G + L A ++G+D D+ Sbjct: 380 SRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHRERLVAHVAELGVDPLDV 435 Score = 63.4 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%) Query: 384 TLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQG 443 I G + + P ++GA+TG+ GL GADIGKI + P+ V + V+ +++ Sbjct: 487 KYRIAVGHRDGVSPQAIVGAITGEGGLRGADIGKIDIFPSFSLVEIPGGVSPDVARRIGA 546 Query: 444 GKIKGKTCRVRLL 456 K+ G+ R+RL Sbjct: 547 AKVAGRPLRIRLD 559 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 154/437 (35%), Positives = 218/437 (49%), Gaps = 21/437 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M FS+L L ++ L + GY TP+QAAA+P LAG D+ A+TG+GKTAAF L Sbjct: 25 MNPFSSLG-LGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP 83 Query: 61 LLQQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 L+ + ++ + LVL PTRELADQ+ ++ + LP + L GG Sbjct: 84 SLELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNM 142 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q L+ I+VAT GRLLDH+++ ++L+ + +V+DEADRMLDMGF D I +++ Sbjct: 143 DKQTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 202 Query: 173 FAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPL 231 P RQTLLFSAT+ I ++ P +E+ + + +EQ + K L Sbjct: 203 MLPKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSL 262 Query: 232 LQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGS 291 L+RL+ + +VFC TK+ V L +A S+HGD Q+ R +TL F G+ Sbjct: 263 LERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGT 322 Query: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 RVLVATDVAARGLDI L V+N+EL PE +VHRIGRT RAG G+AIS E + Sbjct: 323 LRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQK 382 Query: 352 RANIISDMLQIKLNWQTPPANS----------SIATLEAEMATLCIDGGKKAKMRPGDVL 401 I ++ LN + + + K Sbjct: 383 MFEAIKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQPVQHNDSRSRRDDRNKRNEYANK 442 Query: 402 GALTGDIGLDGADIGKI 418 + D G + Sbjct: 443 SDKNSKKAEEKNDPGIV 459 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 136/450 (30%), Positives = 223/450 (49%), Gaps = 12/450 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 + F L V L L G+ +P+QA +P +L G D+ QA+TG+GKTAAFG+ Sbjct: 4 LDNFRKLGV-SEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGI 62 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +++ + + QAL+L PTREL+ Q+A EL L + +I GGQ +Q L Sbjct: 63 PVIELCEGGGKKPQALILSPTRELSIQIAEELNSL-KGKRKLRIAPFYGGQMIEIQLQRL 121 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ TPGR++D +++G + L V+DEAD MLDMGF + I+ ++ + ++ Sbjct: 122 RDGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKR 181 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI-EQQFYETSSKGKIPLLQRLLSL 238 L+FSAT P I I+ R R + +S + EQ ++E + K L R++ + Sbjct: 182 MLMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRIIDV 241 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 Q +VFC T+ D + + L G +LHGD+ Q R + + +F + ++L+AT Sbjct: 242 EQDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIAT 301 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ L V+N+ + E +VHRIGRT RAG +G AI+F P E ++ +I Sbjct: 302 DVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMIQR 361 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 ++ + P I ++ + + + A + A A Sbjct: 362 EAHTEIRREELPQGRDIVEMKKQHFSEQLSEAISAGQHQEYLDFADELIEKTGNASAALA 421 Query: 419 AVHPA--------HVYVAVRQAVAHKAWKQ 440 A+ YV + + K W+ Sbjct: 422 AMLQLRFKGELLPQSYVEIGRKRDRKTWES 451 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 152/421 (36%), Positives = 216/421 (51%), Gaps = 10/421 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F + L P L + E G+ + +P+Q A+P +L GKD+ QA+TG+GKTAA+GL Sbjct: 15 NDFQSFG-LRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPC 73 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +I Q LVL PTRELA QV+ EL +L + L K T+ GG + Q + Sbjct: 74 LNRIKVEDGM-QVLVLTPTRELALQVSDELFKLGKHL-GIKTTTIYGGSSYSKQITQVAK 131 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 + VATPGRLLD L+ + + +++DEAD MLDMGF D I+ + P RQTL Sbjct: 132 GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTL 191 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT PE I ++ + Q P ++I +T+ + IEQ +Y + + R+L Sbjct: 192 LFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYEN 251 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P ++F TKK+ + L+ G +LHGDL Q+ R+Q L +G ++LVATDV Sbjct: 252 PFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDV 311 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD+K L LV+N+ L +D E + HRIGRT RAG SG A++ E++ + Sbjct: 312 AARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGTS 371 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 L P + E KK + L D IA+ Sbjct: 372 GTNLTIAALPTKKEVHLSREEDFL------KKVVDTEIHADAEAVLEKLLKLEDKRSIAL 425 Query: 421 H 421 Sbjct: 426 K 426 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 142/422 (33%), Positives = 225/422 (53%), Gaps = 2/422 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L L+ L+ +G+++ TP+QAAA+P +L G+D +A+TG+GKTAAF L LL Sbjct: 36 FNEL-ALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 94 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +I+ + + QA+++ PTRELA QVA E++ L R + K+L + GG Q +L Sbjct: 95 KINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGA 154 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+V TPGR+ D L + + LD +T V+DEAD ML MGF D + ++ AP S Q +LF Sbjct: 155 HIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLF 214 Query: 184 SATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P + I R R+P +++ + + + Q ++ K + RLL + Sbjct: 215 SATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETD 274 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + +VF T++D + + D L+ G A +LHGD+ Q R++T+ G +LVATDV A Sbjct: 275 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 334 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLD+ + V N+++ +D E ++HRIGRT RAG G AI + + I + + Sbjct: 335 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 394 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 ++ P +A ++ K++K T L+ A+ Sbjct: 395 QMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDAATLAAMLL 454 Query: 423 AH 424 Sbjct: 455 KR 456 Score = 44.5 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 + T + G++ ++ D++GAL ++GL IG I + YV + +A+ + Sbjct: 501 QDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNSETAG 560 Query: 440 QLQGGKIKGKTC 451 +L +I+ K Sbjct: 561 KLSKLRIRQKEA 572 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 153/405 (37%), Positives = 220/405 (54%), Gaps = 11/405 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F+TL L L ++E Y T TP+QA ++P +L G D+ A+TG+GKTAAF L Sbjct: 56 LTDFTTLG-LAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLP 114 Query: 61 LLQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L +I A+ + +ALVL PTRELA Q+A R +F + + GG G Q Sbjct: 115 ILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFT-RPSVAVVIGGAKPGPQ 173 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 ++ ++VATPGRLLDH+ G + LDA+ T+V+DEAD+MLD+GF AI ++ P Sbjct: 174 ARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLP 233 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQR 234 RQ ++FSAT P+ I A++G RDP + + + + I+QQ + + K L Sbjct: 234 RQRQAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAW 293 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 LL+ +VF TK V L + G A ++HG+ Q R++ L +F +G RV Sbjct: 294 LLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRV 353 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ ++ VVNFEL PE +VHRIGRTARAG G+AIS P E Sbjct: 354 LVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLR 413 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 I ++ L P + L + + P Sbjct: 414 DIETLIGRHL---VPGGAQPVRGLAPPHLLRARNQVARQGQMPKR 455 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 160/424 (37%), Positives = 226/424 (53%), Gaps = 2/424 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L+ LP L+ L LGY T + +QA +PA+L G+DV QA+TG+GKTAAF L LL Sbjct: 10 TFAELS-LPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLL 68 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++D + Q LVL PTRELA QVA + R + ++L+LCGGQ + Q L+ Sbjct: 69 SRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRG 128 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +IV TPGR++DHL +G++ LD LN LV+DEAD ML MGF D + V+ P Q + Sbjct: 129 AQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVF 188 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I+ I DPL I I++ IEQ+ K+ L RLL + Sbjct: 189 FSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPV 248 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 + +VF T+ C + + L G +A +L GDL+Q R++T+ R G VL+ATDVA Sbjct: 249 DAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVA 308 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARGLD+ + V N++L D E + HRIGRT RAG +G+AI+F E +R + + Sbjct: 309 ARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMERVTG 368 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVH 421 ++ P +I E+ + L D G D D+ Sbjct: 369 QQMQEVELPDEDAIRAHRNELFRKRVLDTLARGSDYQRELIDGLVDDGYDPVDLACAMAS 428 Query: 422 PAHV 425 A Sbjct: 429 MARS 432 Score = 59.9 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIG 416 + P A M + G K ++PG ++GAL + G+DG IG Sbjct: 445 ERRSRQSSGRDDKPNRRD-RGPSAGMTRYRVSVGHKDGVKPGQLVGALANEGGIDGGKIG 503 Query: 417 KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 +I + A V + + ++ ++ G+ + Sbjct: 504 RIDIRNAFSVVELPNTLPAAVLSRIAQARVAGRPLEI 540 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 159/447 (35%), Positives = 228/447 (51%), Gaps = 26/447 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+FS L L + L E ++T TP+QA A+P ILAG+D+ A+TG+GKTAAF L Sbjct: 36 LTSFSNLG-LAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALP 94 Query: 61 LLQQI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 +L ++ +ALVL PTREL+ Q+ + R N + GG P G Q Sbjct: 95 ILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRH-ANISVSLAIGGVPMGRQ 153 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +L ++VATPGRL+D ++ V LD + LV+DEAD+MLDMGF AI ++R P Sbjct: 154 IRALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLP 213 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQR 234 R +L FSAT P AIA ++G + RDP+ + + +EQ+ K LL Sbjct: 214 HKRHSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAE 273 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +LS +VF TK V L + G +A ++HG+ Q RD+ L F G R Sbjct: 274 VLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRT 333 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 L+ATD+AARG+D+ + V+NF+L PE +VHRIGRTARAG G+AISFC EE Sbjct: 334 LIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLR 393 Query: 355 IISDMLQIKLN---------WQTPPANSSIATLEAEMATLC--------IDGGKKAKMRP 397 I +++++L P I E + + + + R Sbjct: 394 SIEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRPRH 453 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAH 424 GD + G ++ G+ AH Sbjct: 454 GDE-RSGEGRSRAPRSEEGRPQAARAH 479 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 146/413 (35%), Positives = 211/413 (51%), Gaps = 9/413 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L ++ P L + E GY TP+Q A+ +LAG+D+ A+TG+GKTA F L LL Sbjct: 5 SFADLQLVDP-LLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLL 63 Query: 63 QQIDASLF------QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 Q++ A+ + + LVL PTRELA QV + L LP L + GG Q Sbjct: 64 QRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLP-LTSLVIFGGVRVKPQI 122 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 ++L I++ATPGRL+D ++ V L + LV+DEADRMLDMGF + V++ PA Sbjct: 123 EALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPA 182 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRL 235 RQ LLFSAT+ + I A++ DP +E+ + + K LL L Sbjct: 183 ERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHL 242 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + Q +VF TK + + L + G A ++HG+ Q R + L F +GS RVL Sbjct: 243 VESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRVL 302 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+AARG+DI L VVN+EL PE +VHRIGRT RAG+ G A+S +E + Sbjct: 303 VATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLLAD 362 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDI 408 I + + T P + ++ + + G+ G Sbjct: 363 IEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQRNKKK 415 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 544 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 148/424 (34%), Positives = 230/424 (54%), Gaps = 4/424 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F++L LP L+ + +G+ + T +QA +P +LAGKDV +A+TG+GKTAAFGL L Sbjct: 17 FASLG-LPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALA 75 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +ID S+ + Q +VL PTRELA QVA + + + ++ TL GGQ +G Q L+ Sbjct: 76 KIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA 135 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 ++V TPGRL+DHL++ ++ LD L V+DEAD ML+MGF + I ++ P + Q LF Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLF 195 Query: 184 SATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P AI I+ R +DP I A I Q ++ S K+ L+R+ + + Sbjct: 196 SATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYD 255 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 + ++F T+ D + + L G AL+L+GDL Q R++ + + +G + +LVATDV A Sbjct: 256 AMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVA 315 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RGLDI + LV+N++L D E +VHRIGRT RAG G++I+F P E + Sbjct: 316 RGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTNG 375 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGDIGLDGADIGKIAV 420 + P I + E + + K +++ + + + D+ + Sbjct: 376 TVLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMREIVEGMAAESEVSMIDLAAALL 435 Query: 421 HPAH 424 Sbjct: 436 FQKQ 439 Score = 66.1 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 N P + + + + T ++ GK+ RPGD++GA+ +I LD + IG I +H H Sbjct: 498 NRDEKPRKAKVNRSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYIGAINLHDKH 557 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 +V + + + + QL+G +++ + + Sbjct: 558 SFVQLPKGIPTDLFNQLKGVRVRRQPLSI 586 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 149/395 (37%), Positives = 218/395 (55%), Gaps = 3/395 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L + P L ++++G+ T T VQ+ A+P IL +D+ V +KTGSGKTA FG+ + Sbjct: 3 NTFNELGISAP-ILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ + Q L+L P RELA QV ++R++A++L + K + G ++ L Sbjct: 62 LQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILNK 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+ TPGR+ DH+ GT+S + LV+DEADRMLDMGF D + +++ P R TL Sbjct: 121 GVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITL 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P I I R +P+ IEI+S + I Q +Y + K L RLL + + Sbjct: 181 LFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEK 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P SC++FCNTK V L + G S+ +LHGD+ Q R T+ +F G +LVATDV Sbjct: 241 PESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+ I+ L LV+N+++ D + +VHRIGRT RAG+ G A S ++ I + + Sbjct: 301 AARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEHI 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 + + P + E A K K Sbjct: 361 GTLILEEELPDEEAFTKAREEAAQWIKANSLKEKA 395 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 138/414 (33%), Positives = 217/414 (52%), Gaps = 18/414 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F L L P N+ Y TP+Q A+PAIL +D+ A+TGSGKTAAF + Sbjct: 183 IENFDELK-LDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 241 Query: 61 LLQQID---------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQP 111 ++ + + + L+L PTRELA Q+ E ++ + P + + GG Sbjct: 242 IINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGAD 300 Query: 112 FGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVI 171 Q +Q H++VATPGRL+D ++K +SL+ +V+DEADRMLDMGF I +I Sbjct: 301 THSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKII 360 Query: 172 --RFAPA--SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSK 226 P+ +RQTL+FSAT+P+ I ++ + + + + + I+Q+ + Sbjct: 361 EESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDV 420 Query: 227 GKIPLLQRLLSLHQPS-SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLV 285 K+ L+ + + P+ ++F TKK ++ L G S+HGD Q +R+ L Sbjct: 421 EKLNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALS 480 Query: 286 RFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 F NG +LVAT VAARGLDI +++ V+N++L D E +VHRIGRT R GN G A SF Sbjct: 481 MFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFY 540 Query: 346 APEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 + A + D+L+ + N P S++A +T+ + + + R + Sbjct: 541 VDKNNNIAIDLVDLLK-EANQIVPQWLSALADELKRNSTMGSNNKRHNQRRYKN 593 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 155/396 (39%), Positives = 238/396 (60%), Gaps = 2/396 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L +L L EL ++ TP+QA +P I+ G DV QA+TG+GKT AFG+ +++ Sbjct: 5 FEQLPIL-EQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIE 63 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +ID L +TQ+L+LCPTREL QV EL++L R+ P +I + GG+ + Q +L+ P Sbjct: 64 KIDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALESKP 123 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+I+ATPGR++DH+++G + L AL L +DEAD ML MGF +A++ +++ P RQT+LF Sbjct: 124 HLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTVLF 183 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P +I I+ + Q++ +++ A+ IEQ ++ K LL RLL L + Sbjct: 184 SATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDY 243 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F NTKKD + L + G A ++HGDL+Q R + F G ++L+ATDVAA Sbjct: 244 STILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAA 303 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+DI +++VVN++L + EV+VHRIGRT RAG GLA SF +P + + + L+ Sbjct: 304 RGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKE 363 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 K+ + P+ I E + + + Sbjct: 364 KVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQEN 399 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 143/422 (33%), Positives = 207/422 (49%), Gaps = 38/422 (9%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F + L TN+ Y TPVQ A+P IL+G+D+ A+TGSGKTAAF + Sbjct: 266 ITSFDDIK-LTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVP 324 Query: 61 LLQQIDAS---------------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILT 105 +L ++ LVL PTRELA Q+ E ++ + + + Sbjct: 325 ILNRMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFS-YRSRMRPAV 383 Query: 106 LCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSD 165 L GG Q L H+IVATPGRL D + +G + L+ L LV+DEADRMLDMGF Sbjct: 384 LYGGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEP 443 Query: 166 AIDDVIRF--APA--SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQF 220 I +I P RQTL+FSAT+P+ I ++ + + + + I Q Sbjct: 444 QIRHIIENRDMPPTGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTI 503 Query: 221 YETSSKGKIPLLQRLLSLHQPSS--------CVVFCNTKKDCQAVCDALNEVGQSALSLH 272 + K L LLS + S ++F TKK A+ + L + S+H Sbjct: 504 LWVNENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIH 563 Query: 273 GDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRT 332 GD QR+R+ L F +G +LVAT VAARGLDI ++ V+N++L D E +VHRIGRT Sbjct: 564 GDRSQREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRT 623 Query: 333 ARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 R GN G+A SF + + + ++L N + + EMA G ++ Sbjct: 624 GRMGNLGIATSFFNEKNRNIVSDLVELL--------IETNQELPSFLEEMANDRYGGPRR 675 Query: 393 AK 394 + Sbjct: 676 SN 677 >UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Bacillus RepID=D2LUR2_BACS4 Length = 482 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 167/480 (34%), Positives = 245/480 (51%), Gaps = 26/480 (5%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F+ L L ++ L Y +T VQ LP L KD+ V++ TGSGKTAAF + + Sbjct: 4 TQFTELG-LSDVINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPI 62 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +Q+ QALVL PTRELA QV E + R L K L + G QPF Q+ L+ Sbjct: 63 CEQVTWDENSPQALVLTPTRELAAQVKEEFMNIGR-LKRIKALAIYGKQPFDRQKLELKQ 121 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA-SRQT 180 H++V TPGRLLDHLQKGT+ ++ + LV+DEAD M + GF D +D +++ + T Sbjct: 122 KTHVVVGTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVT 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLH 239 ++SAT EA+ IS R +P+ I I+ I Q + + K +Q + + Sbjct: 182 SIYSATISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVE 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P SC+VFC T+ + + L + S +HG L Q++R + F G R LV T+ Sbjct: 242 NPDSCIVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTN 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARG+DI+S+ LV+N+++ D EV+VHR GRT RAGN G AI+F P+E I D Sbjct: 302 LAARGIDIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPDERILFREIEDY 361 Query: 360 LQIKLNWQTPPANSSIATLEA----------------------EMATLCIDGGKKAKMRP 397 + + P+ + L+ + L +GGKK K+R Sbjct: 362 IGYAIPPMNIPSEREVERLKPAFEDKMRNRPLTKRNKASQLNTNIMQLYFNGGKKKKLRA 421 Query: 398 GDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 D +G +T + DIG I + YV + ++++ IKGKT +V K Sbjct: 422 ADFVGTITSIPTITSDDIGVITIQERETYVDILNNKGPIVLQEMKQRTIKGKTLKVHPAK 481 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 131/414 (31%), Positives = 201/414 (48%), Gaps = 30/414 (7%) Query: 10 LPPAQLTNLNELGYLTMTPVQAA-------------------ALPAILAGKDVRVQAKTG 50 P ++ + + + P+QA P +L+G D+ A+TG Sbjct: 201 FPKYIMSVIEDSKFSEPMPIQAQYVTNKKQKKKYKMYECSFIPFPIVLSGHDLIGIAQTG 260 Query: 51 SGKTAAFGLGLLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILT 105 SGKT +F L L I+A ALVL PTRELA+Q+ + + + Sbjct: 261 SGKTLSFMLPALVHINAQDPVKPGEGPIALVLAPTRELANQIQEQCFKFGSKCK-ISSVC 319 Query: 106 LCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSD 165 + GG P Q L++ I++ATPGRL+D L+ + L + LV+DEADRMLDMGF Sbjct: 320 VYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADRMLDMGFEP 379 Query: 166 AIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR-DPLAIEID--STDALPPIEQQFYE 222 +I ++ RQTL+FSATWP+ + ++ DP+ I+I + I+QQ Sbjct: 380 SIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDIDQQVEI 439 Query: 223 TSSKGKIPLLQRLLSL-HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRD 281 K ++ +LS + ++F TKKDC + AL + +HGD QRDRD Sbjct: 440 IDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDKSQRDRD 499 Query: 282 QTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLA 341 + + F G L+ATDVA+RGLD+K ++LV+N++ E +VHR+GRT RAG G A Sbjct: 500 KVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRVGRTGRAGAQGKA 559 Query: 342 ISFCAPEEAQRA-NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 ISF E ++ + D+L+ + + + + +K Sbjct: 560 ISFLDQYEDKKISKELVDVLKQNNQEISQDLLELSEANYKGNYSNNYNKNRSSK 613 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 158/393 (40%), Positives = 227/393 (57%), Gaps = 2/393 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +FS L L P + + ++GY TP+Q +P ILAG DV QA TG+GKTAAFG+ Sbjct: 3 IPSFSDL-QLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIP 61 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++ + Q +VLCP+RELA QV EL +LA IL + GGQP Q +L Sbjct: 62 AIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALS 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 II+ TPGR++DH+++ T+ LDA++ +V+DEAD+MLDMGF + I++++ P RQT Sbjct: 122 RGVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQT 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 ++ SAT+P I IS R Q++P+ ++ + +P IEQ + E K L R+L + Sbjct: 182 VILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFY 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 QP ++FCNT+ AV AL G A LHG + Q RD+ + F G +L+ATD Sbjct: 242 QPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATD 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+D++ ++LV NF+ D E +VHRIGRTARAG +G AISF +P E R + Sbjct: 302 VAARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRDVRRS 361 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 + + P I +A D K Sbjct: 362 TRAEPEPLPIPTLREIGGKKATTTLADADALMK 394 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 144/427 (33%), Positives = 226/427 (52%), Gaps = 7/427 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS L L + + +LGY TP+Q A+P IL+G+DV QA+TG+GKTAAF L L+ Sbjct: 9 FSQLG-LNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 64 Q--IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 +++ Q LVL PTRELA QVA + + A+ +PN + + GGQ +G Q +L+ Sbjct: 68 NMDLESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQ 127 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 ++V T GR++DH++KGT+ LD L LV+DEAD ML MGF D + V+ Q L Sbjct: 128 GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQRL 187 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P IA I R+P I++ + + Q+F KI L RLL + + Sbjct: 188 LFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEE 247 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 ++F TK V D L +G +++GD++Q R+ + +F + + VLVATDV Sbjct: 248 TDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDV 307 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 ARG+D++ + V+N+++ D + +VHRIGRT RAG G++IS +E + + Sbjct: 308 VARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTLERFT 367 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM---RPGDVLGALTGDIGLDGADIGK 417 + P+ +A + I +++ ++ ++ LD ++ Sbjct: 368 GSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIRDELELDSDELLA 427 Query: 418 IAVHPAH 424 + A Sbjct: 428 VLTLLAQ 434 Score = 55.7 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 38/91 (41%) Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 K + + ++ T ++ G+ ++P +++GA+ + +D I I++ Sbjct: 488 KFDRSDRSDRKPRRAVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSKHICNISIQK 547 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 H V + ++ K L+ + GK + Sbjct: 548 DHTLVDLPANLSPKVISHLRNVWVAGKKLNL 578 >UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase n=2 Tax=Bacillus pumilus RepID=A8FG79_BACP2 Length = 480 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 162/476 (34%), Positives = 241/476 (50%), Gaps = 24/476 (5%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L L L + T TPVQ L + +D+ V+++TGSGKTAA+GL + + Sbjct: 6 FDQY-PLSDDLKQALKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICE 64 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +D + + QAL+L PTRELA QV +L L R L K + G PF Q+ L Sbjct: 65 MVDWAENKPQALILVPTRELAMQVKQDLTSLGR-LKRIKAAAIFGKAPFQAQKIELAQKN 123 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+ TPGR+LDHL+KGT+SL+ L V+DEAD ML+MGF D + +I++ P R ++LF Sbjct: 124 HIVCGTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLF 183 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT + + +S + + P IEI + +P I ET + K LLQR + + P Sbjct: 184 SATMSDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPD 243 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 SC++FCNT+ + L+E +HG + Q DR + F NG R L+ATD+AA Sbjct: 244 SCIIFCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAA 303 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+D+ + V++++L ++ E ++HR GRT RAG SG I+F + + + I Sbjct: 304 RGIDVSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKEEAGI 363 Query: 363 KLNWQTPPANSSI---------------------ATLEAEMATLCIDGGKKAKMRPGDVL 401 Q P A +E ++ L +GGKK K+R D + Sbjct: 364 DFKTQPYPTKEDAEQHVERFEEKIETPIQKENKQAGVEKDIMKLYFNGGKKKKLRAVDFV 423 Query: 402 GALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 G + G+ DIG I + YV + ++ IKGK +V + Sbjct: 424 GTIAKIDGVAFDDIGIITIQDTKTYVDILNGKGPLVLNAMRHTTIKGKQLKVHEAR 479 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 542 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 155/404 (38%), Positives = 212/404 (52%), Gaps = 7/404 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L L P L ++ GY TPVQ A+PA L+G D+ V + TGSGKTAAF L + Sbjct: 2 SFSELG-LDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60 Query: 63 QQIDASLF----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 Q++ A + LVL PTRELA QV + + + L GG P+G+Q Sbjct: 61 QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L ++VATPGRL+DHL++G + L LV+DEADRMLDMGF D I + PA R Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSS-KGKIPLLQRLL 236 QTLLFSAT + ++ + RD IEI++ IEQ+ + K LL LL Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALL 240 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + +VF +TK+ + + D L E G ++ +LHGD++Q R++ L R G RVLV Sbjct: 241 RDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLV 300 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARG+D+ S+ V+NF+L E +VHRIGRT RAG +G+A+SF E I Sbjct: 301 ATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNI 360 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV 400 ++ T P G + Sbjct: 361 ERYTGNRIEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKR 404 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 156/403 (38%), Positives = 220/403 (54%), Gaps = 7/403 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +++ L P+ L L ELGY T T +QAAA+P + GKD+ A+TG+GKTAAF L +L Sbjct: 5 NFESIS-LNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPIL 63 Query: 63 QQIDASL----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 ++ + +AL+L PTRELA Q+ +R AR+L + + GG P Q Sbjct: 64 HRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYL-RLRTGVIMGGVPAHPQIKM 122 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ P I+VATPGRL+D +G + LD + T V+DEADRMLDMGF D I + P Sbjct: 123 LRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDH 182 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLS 237 QTLLFSAT I A++ R+ R+P+ IE+ ++ I Q+ K LL L Sbjct: 183 QTLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFK 242 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK+ V + L +G SA ++H QR R + L+ F G VLVA Sbjct: 243 ENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVA 302 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARG+D+ + V+N+EL DPE +VHRIGRTARAG SG A+SFC +E + I Sbjct: 303 TDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIE 362 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV 400 + + + SIA + + + +P Sbjct: 363 KLTKSSIAICDNNPFHSIAVASMHKVAKAGNKPQYFQKKPRRF 405 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 149/388 (38%), Positives = 213/388 (54%), Gaps = 4/388 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L ++ P L +N+LG+ TP+Q A+P IL G ++ QA TG+GKTAA+ L Sbjct: 1 MEEFKKLGLITP-LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLP 59 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +LQ+I Q L++ PTRELA QVA E+ +L ++L + L + GGQ Q L+ Sbjct: 60 VLQRIQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLR 117 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +IV TPGR+LDH+ + T + +++DEAD MLDMGF D I+ ++ +QT Sbjct: 118 QGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQT 177 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIE-IDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT P I I + ++ + +P I Q +YE KI L +L+ Sbjct: 178 LLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSE 237 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 P +VFC TKK V + LN G +A LHGD+ QR+R QT+ F G +LVATD Sbjct: 238 LPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATD 297 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI + V+NF++ +PE ++HRIGRT RAG G AI+ E + I + Sbjct: 298 VAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEA 357 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCI 387 + +L + P + + I Sbjct: 358 INKRLKREILPEPVDLEEARFKKIAKKI 385 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 151/396 (38%), Positives = 222/396 (56%), Gaps = 7/396 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 ++F+ L L P L LGY TP+Q+ A+P +L G D+ +A+TG+GKTA+F L + Sbjct: 4 SSFAEL-ALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPI 62 Query: 62 LQQIDASL----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 ++++ + +ALVL PTRELA QVA R L +++++ GG P Q Sbjct: 63 IEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIK 121 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ I+VATPGRLLD L++ +SL+ L LV+DEADRMLD+GF D I ++ +A Sbjct: 122 RLKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADD 181 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLL 236 RQTLLF+AT E++ ++ +P I++ + I Q Y+ K +L L+ Sbjct: 182 RQTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLI 241 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 + + +VF TKK + L + G +A ++HG+ QR+R + L F G VLV Sbjct: 242 TEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLV 301 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDVAARGLDI+SL VVN++L PE +VHRIGRT RAG +G A+S AP E + I Sbjct: 302 ATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRI 361 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK 392 +++ K+ + P LE + K Sbjct: 362 EKLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRKP 397 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 156/398 (39%), Positives = 229/398 (57%), Gaps = 3/398 (0%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L L + L +LG+ T TPVQAA +PA+LAG DV +A+TG+GKT AFGL L+ Sbjct: 6 SFAELG-LSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLI 64 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ID + + QAL+L PTRELA QVA L A + +IL + GGQP G+Q +L+ Sbjct: 65 DSIDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDG 124 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR++DH+++GT++LDAL +V+DEAD ML MGF + I+ ++ PA RQT L Sbjct: 125 AQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTL 184 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I I+ R R+P I I + +A I+Q + + K L R++ + Sbjct: 185 FSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAG 244 Query: 242 -SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 + +VF TK + +ALN G + L+GD+EQ +R++ + +G V+VATDV Sbjct: 245 LDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDV 304 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARG+D+ + V N++ D EV+VHRIGRT RAG G AI F P + + I + Sbjct: 305 AARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERLT 364 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 + Q P +++ E + + P Sbjct: 365 GKPVREQKVPDRAAVIARREERLAERLQAELAGEASPQ 402 Score = 56.8 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 366 WQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHV 425 P+ EA+M + G+ + PG ++GAL + GL+G DIG+I + H Sbjct: 465 RAPRPSRGKDRGPEADMVRYYMPVGRNHGIAPGAIVGALANEGGLNGRDIGRIGLQDDHS 524 Query: 426 YVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +V + A+ A ++L + + R+ + + Sbjct: 525 HVDLPAALDEAAVRRLGNIHVANR--RLEMAR 554 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 141/421 (33%), Positives = 207/421 (49%), Gaps = 6/421 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L L L ++++GY TP+Q A+PAIL +DV A+TG+GKTA+F L +L Sbjct: 156 TFADL-ELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPML 214 Query: 63 QQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + + S ++L+L PTRELA QVA ++L L GG+ Q++ L Sbjct: 215 EILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLK-LNHALLIGGESMADQKEVL 273 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 +++ATPGRLLD ++G + L+ LV+DEADRMLDMGF I+ ++ P +RQ Sbjct: 274 NRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQ 333 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT I ++ P I + ++ I K L++LL Sbjct: 334 TLLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKD 393 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + +VFCN K+D + +L + G SA +LHGDL Q R TL +F N +VLV + Sbjct: 394 PALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCS 453 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+DI L V NF+L + E +VHRIGRT RAG G A S P + A I Sbjct: 454 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEK 513 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + ++ + + + + R + + + Sbjct: 514 LTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERENAVPTPREQQPEAKPQQTA 573 Query: 419 A 419 Sbjct: 574 R 574 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 139/420 (33%), Positives = 214/420 (50%), Gaps = 18/420 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F + +TNL + + TPVQ ++P +++G+D+ A+TGSGKTAAF L Sbjct: 351 IKSFEEAGIY-DGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLP 409 Query: 61 LLQQIDASL---------FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQP 111 +L + + + QALV+ PTRELA Q+ + R+ + + + L GG Sbjct: 410 VLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTM-LRPVVLYGGTS 468 Query: 112 FGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVI 171 G Q +++ HI+V TPGRL+D + KG +SL L L++DEADRMLDMGF I ++ Sbjct: 469 VGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIV 528 Query: 172 RFA--PA--SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSK 226 P RQTL+FSAT+PE I ++G D L + + A + Q F++ + Sbjct: 529 HELGTPEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQ 588 Query: 227 GKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR 286 K L +LS +VF K++ + L+E G S+HGD QR+R++ L Sbjct: 589 QKRQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRD 648 Query: 287 FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 F G A +L+AT VAARGLDI +++ V+N++L + +VHRIGRT R GN G A SF + Sbjct: 649 FKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFS 708 Query: 347 PE-EAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALT 405 + + A + +L + P + + G + D Sbjct: 709 EDGDGSLAKPLMRIL-VDAQQNIPDWLEASGQSSMSSGSYSGGGRFGGRDIRKDQERTRE 767 >UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostridium RepID=B1V1Y2_CLOPE Length = 453 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 155/477 (32%), Positives = 248/477 (51%), Gaps = 48/477 (10%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ LN L + LN LGY + VQ A++P +L G+D+ V+++TGSGKTA+FG+ + Sbjct: 2 KFNELN-LSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 ++I+ + Q LVL PTRELA QV EL + R + + + G QPF Q L+ Sbjct: 61 EKINIEEKKVQCLVLTPTRELAIQVKDELSNIGR-IKKVRCAAIFGKQPFNEQIRELKQR 119 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 HI+V TPGR+ DH+++GT+ L +N +V+DEAD+ML MGF D I D++ ++ T L Sbjct: 120 VHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTAL 179 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242 FSAT+ + I I R+P+ +E+ S ++ +I + Sbjct: 180 FSATFSKEIEEICEEYMRNPMLLEVKSK------------VFNRDRIEESAIEIEE---- 223 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 K ++V L + G + LHGD+EQ+ R + + F + +VLV TD+AA Sbjct: 224 --------KNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 275 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+ + S+ELV+N+E+ + E +VHRIGRT RAG G AI+F E + + + + Sbjct: 276 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 335 Query: 363 KLNWQTPPANSSI----------------------ATLEAEMATLCIDGGKKAKMRPGDV 400 ++ + P++ + + ++ + ++GGKK K+R D+ Sbjct: 336 EIRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKKKIRAFDI 395 Query: 401 LGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 +G + GL G DIG I V YV + K K + IKGK +++ + Sbjct: 396 VGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKIQKAR 452 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 152/415 (36%), Positives = 228/415 (54%), Gaps = 3/415 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ L L P + + GY + +Q ++P ILAG D+ QA+TG+GKTAAF L Sbjct: 16 IGGFAAL-ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALP 74 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 +L +ID S + QAL+L PTRELA QVA A+ +P ++ + GG P G Q +++ Sbjct: 75 ILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 134 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 + I+VATPGRL DHL++ L +N LV+DEAD ML +GF D ++ + + P +RQT Sbjct: 135 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQT 194 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 +LFSAT P++I AI+ R RDP ++I T + IEQ + K + LL + Sbjct: 195 VLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVE 254 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + ++F TK+ + AL G A +L+GD+ Q R++ + +G ++VATD Sbjct: 255 DFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATD 314 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + V N ++ +DPE +VHRIGRT RAG G A+ P E + +I + Sbjct: 315 VAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERV 374 Query: 360 LQIKLNWQTPPANSSIATLE-AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 K+ P ++ ++ A+ GD+L LT DIG Sbjct: 375 TGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPR 429 Score = 58.3 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 365 NWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAH 424 + A +A A T G + + ++LGA+ + GL IG+I V + Sbjct: 479 PERERRAPVPLAEGRARCRTAL---GARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSF 535 Query: 425 VYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 V + + + +L+ ++ GK ++R + Sbjct: 536 SLVELPEDGLERLLTKLKDTRVAGKQLKLRRYR 568 >UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixodes scapularis RepID=B7QFN5_IXOSC Length = 519 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 133/410 (32%), Positives = 188/410 (45%), Gaps = 12/410 (2%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69 P + +P+QA A P +L G+D+ A+TGSGKT A+ L + Sbjct: 101 FPEPCRELFRSKNFTEPSPIQAQAWPVVLGGRDLVGIAQTGSGKTLAYVLPAAIHMSDQP 160 Query: 70 F-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124 +VL PTREL Q++ K + GG G Q LQ H Sbjct: 161 QPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQIARLQGGAH 220 Query: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184 I +ATPGRLLD L+ G ++L + LV+DEADRMLDMGF I ++ RQT+++S Sbjct: 221 ICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTRPDRQTVMWS 280 Query: 185 ATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRLLSL---H 239 ATWP + ++ D + I + S D A I Q + K L L Sbjct: 281 ATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKLLETLREINAE 340 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 ++F TK + L + G A++ HGDL Q RD L RF +G +LVATD Sbjct: 341 GDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSGKTPILVATD 400 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ ++ V+N++ E +VHRIGRT R+ SG AI+ P+ A +A + + Sbjct: 401 VAARGLDVSDIKYVINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPDNAGQAKQLVSV 460 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK--MRPGDVLGALTGD 407 LQ P + ++ + RP G GD Sbjct: 461 LQEAKQEVNPELLELVDRQVSQKFANRRRRPAQQSWDRRPQHRQGDRFGD 510 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 169/403 (41%), Positives = 222/403 (55%), Gaps = 24/403 (5%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F+TL L A L L+EL Y T TPVQA A+PA LAG+D+ V ++TGSGKTAAF L Sbjct: 58 SGFATLG-LDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPA 116 Query: 62 LQQID---------------------ASLFQTQALVLCPTRELADQVAGELRRLARFLPN 100 +Q+I S Q LVL PTRELA QV + R L Sbjct: 117 IQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRR 176 Query: 101 TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD 160 ++ GG P+ Q +L P I+VATPGRLLDH+ G + L AL LV DEADRMLD Sbjct: 177 IVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLD 236 Query: 161 MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQ 219 MGF+D ID ++ PA+RQTL+FSAT IA ++ R RDP IEI + A IEQ+ Sbjct: 237 MGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQR 296 Query: 220 FYETSS-KGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR 278 + T K LL LL +VF TK+D ++ + L++ G SA +LHGD+ Q Sbjct: 297 LHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQG 356 Query: 279 DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNS 338 R++TL G+ RVLVATDVAARG+D+ + VVNF+L E +VHRIGRT RAG S Sbjct: 357 ARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRS 416 Query: 339 GLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAE 381 G AI+ + + I +++ + + Sbjct: 417 GTAINLVNHNDMFQWKRIERFTNQRIDASVIEGLEPRRSPKPR 459 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 145/398 (36%), Positives = 222/398 (55%), Gaps = 11/398 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGL 61 +F L L A L + G+ T +Q +P +L+G D+ Q++TG+GKTAAF L + Sbjct: 2 SFENLG-LSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 ++ ID QA++L PTRELA QVA E++ L R + + GGQP G Q +L+ Sbjct: 61 IEAIDEKEKSVQAIILAPTRELALQVADEIKSL-RGRKRVYVYAVYGGQPIGPQIRALER 119 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H++V TPGR+LDH+++GT+ L + ++DEADRMLDMGF D I+ + R P ++ L Sbjct: 120 GTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVL 179 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQ 240 +FSAT P I ++ R D I++ S + +P +EQ++ E K L+++LS Sbjct: 180 MFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILS--D 237 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 +VFC TK++ + + + L + G SA +L+GD+ Q R++T RF R+LVATDV Sbjct: 238 DFYGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDV 297 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + +VN+ L E +VHRIGRT R G G A++F P E +R I+ + Sbjct: 298 AARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIASVA 357 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 + + L E + + R Sbjct: 358 GVDIQKSELSE-----ELPREYHERYKREERPQRYRKN 390 >UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Eukaryota RepID=Q17KA8_AEDAE Length = 718 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 187/386 (48%), Gaps = 13/386 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F P L + G+ T +QA ++G+D+ AKTGSGKT A+ L Sbjct: 100 IMQFGESG-FPSVFLDEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILP 158 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 L I ALVL PTRELA Q+ R + + GG Q Sbjct: 159 ALIHISNQPRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNT-CIFGGASKHPQ 217 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 D L+ I++ATPGRL+D L+ GT +L LV+DEADRMLDMGF I +I Sbjct: 218 ADDLRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIR 277 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQ 233 RQ L++SATWP+ I ++ R+ + I I S + A I Q K L Sbjct: 278 PDRQVLMWSATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQIIECCEEYEKETRLF 337 Query: 234 RLLSL---HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 +LL+ S ++F TK+ + + + G +HGD Q+DRD L F Sbjct: 338 KLLTELSQQGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTFRRL 397 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + +LVATDVA+RGLD+ ++ V+NF+ + E ++HRIGRT R+ N G + +F P Sbjct: 398 RSGILVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTSYTFFTPANG 457 Query: 351 QRANIISDMLQIKLNWQTPPANSSIA 376 +A + +L+ + N P A Sbjct: 458 AKAGDLIGVLR-EANQFVNPELEQYA 482 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 147/386 (38%), Positives = 230/386 (59%), Gaps = 9/386 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F +L V P + L +LG T TP+Q ++P +L G+D+ A+TG+GKTAAFGL Sbjct: 22 LTNFESLGVSKP-IIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLP 80 Query: 61 LLQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 L++++ A + + L+L PTREL +Q+A L++ R + +I + GG Q Sbjct: 81 LIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIR-KSSLRINVVVGGVSINKQ 139 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 + L+ I+VATPGRLLD + + ++L A+ LV+DEAD+MLD+GF + + + P Sbjct: 140 QLQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVP 199 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETS-SKGKIPLLQ 233 RQT+LFSAT P+AIA ++G DP+ +E+ A +EQ + + K LL+ Sbjct: 200 KKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 259 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 + L+ + +VF TK + + L +G S S+HG+ Q R++ L F +GS + Sbjct: 260 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 L+ATDVAARG+DI ++ V N++L P+ +VHRIGRTARAG G+AI+FCAP+EA+ Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 379 Query: 354 NIISDMLQIKLNWQTPPANSSIATLE 379 I ++ I + + A ++I+ Sbjct: 380 RDIERLMGIDITVASGEAPANISGGP 405 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 142/400 (35%), Positives = 208/400 (52%), Gaps = 25/400 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ ++ L A N+ Y+ TPVQ A+P + AG+D+ A+TGSGKTAAF Sbjct: 145 VNTFAEID-LGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFP 203 Query: 61 LL------QQIDASLF----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQ 110 ++ Q I+ A++L PTRELA Q+ E R+ + + K++ GG Sbjct: 204 IISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGT 262 Query: 111 PFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDV 170 P Q L+ I+VATPGRL D L++G VSL + L +DEADRMLDMGF I + Sbjct: 263 PVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKI 322 Query: 171 IRFA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSS 225 ++ P RQT+LFSAT+P I ++ + + + + + I Q+ Sbjct: 323 VQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHD 382 Query: 226 KGKIPLLQRLL--SLHQPSS-----CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR 278 K L LL + +VF TKK ++ + L G A ++HGD Q+ Sbjct: 383 SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQ 442 Query: 279 DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNS 338 +R+ L F G +LVATDVAARGLDI + VVNF+L D + +VHRIGRT RAGNS Sbjct: 443 EREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNS 502 Query: 339 GLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATL 378 GLA +F A +++++ + N + P + A+ Sbjct: 503 GLATAFFNDNNTTMAKPLAELM-QEANQEVPDWLTRYASR 541 >UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EV19_ARCB4 Length = 454 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 197/447 (44%), Positives = 280/447 (62%), Gaps = 3/447 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS LN L L NL+ L Y T+T +Q +P L KD+ +AKTGSGKT AF L ++ Sbjct: 3 FSELN-LSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIVN 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 ++ A F+ QAL+L PTRELA+Q+A LR L+R + N K+LTLCGG PF Q SLQH Sbjct: 62 KLKAKEFKIQALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSLQHNA 121 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 HI+VATPGR+L H+++ ++L+ ++T V+DEAD+MLDMGF D I ++I P +RQT+LF Sbjct: 122 HIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTMLF 181 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+ + I + + ++P+ EI + I Q+FYE + K L+ L+S +Q + Sbjct: 182 SATYEKNIETFASNILKNPIYKEISDEKEI-LINQKFYEVTPSEKTALIPALISHNQAKT 240 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 ++FCN K C+ + D L ++G L+LH DLEQ+ RD+T+V F+N S +L+ATDVA+R Sbjct: 241 TLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDVASR 300 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII-SDMLQI 362 GL I ++LV+N++L+ D ++H HRIGRTARAG GLAIS E + II I Sbjct: 301 GLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKEKFNNI 360 Query: 363 KLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHP 422 K+ + + + T+ I+GGKK K+R GD+LGAL + GL DIGKI V Sbjct: 361 KIENPKDIKDDISFEINSNFRTVFINGGKKQKLRKGDILGALISEAGLKSDDIGKIDVMD 420 Query: 423 AHVYVAVRQAVAHKAWKQLQGGKIKGK 449 Y AV+ + + +IKGK Sbjct: 421 FCSYAAVKSDKISNIFSTSKSMRIKGK 447 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 152/415 (36%), Positives = 223/415 (53%), Gaps = 7/415 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L + + L+ L +T TPVQ ++P +L GK++ A+TG+GKTAAFGL ++ Sbjct: 4 NFADLGI-EQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPII 62 Query: 63 QQIDASL--FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 Q + QALVL PTRELA QV L + + +I+ + GG G+Q+ L+ Sbjct: 63 QTVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTE-LRIVCVYGGTSIGVQKRKLE 121 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 I++ATPGRLLDHL G V++ + LV+DEADRMLDMGF + + R PA +Q Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSLH 239 LLFSAT+ + I I+ ++ P+ +E+ + ++Q Y K K LL L+ Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSR 241 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +VF TK+ + L G A+S++GD Q R + L F G R L+ATD Sbjct: 242 NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATD 301 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLDI+ LE VVNF++ + E +VHRIGRT RAG SGLA+S + +E + I ++ Sbjct: 302 VAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIENL 361 Query: 360 LQIKLNWQTPPANSS--IATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDG 412 L +L + I +E E + ++ R A+ + G Sbjct: 362 LDQRLPQEWLAGFEPTLIEEVEPEKNGSGRRRSRSSEKRKLKAKLAIHKNRGKSR 416 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 147/396 (37%), Positives = 225/396 (56%), Gaps = 3/396 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L + LN+ TPVQ A+P +LA +DV QA+TG+GKT AF L + Sbjct: 3 NKFAKLGI-SEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L++++ QAL++ PTRELA Q+ E ++LA + IL GGQ Q L+ Sbjct: 62 LERVNVEKPTIQALIITPTRELAIQITAETKKLAE-VKGINILAAYGGQDVEQQLRKLKG 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 + HII+ TPGRLLDHL++ T++L L+ LV+DEAD+ML MGF ++D++ P RQ + Sbjct: 121 SIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNM 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 FSAT P + ++ + +DP+ I++ S L I Q ET+ +GK LL +L + Sbjct: 181 FFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEYN 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P ++FC TK+ A+ +AL +G ++ LHGDL Q R++ + F + LVATDV Sbjct: 241 PFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLDI+ + + N+++ D E ++HRIGRT RAG +G+AI+F + II ++ Sbjct: 301 AARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKVI 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR 396 ++ L+ Q + E + G K + Sbjct: 361 KMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSK 396 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 539 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 141/457 (30%), Positives = 221/457 (48%), Gaps = 17/457 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F+ L L P L + E+GY T TP+Q A+P + G+DV A+TG+GKTA+F L ++ Sbjct: 2 TFADLG-LSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60 Query: 63 QQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + A ++L+L PTRELA QV+ ++ + L GG+ Q+ L Sbjct: 61 DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK-LSMALLIGGESMNEQQKVL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 +++ATPGRL+D ++G++ L + LV+DEADRMLDMGF ++ ++ P RQ Sbjct: 120 DRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSL 238 TL FSAT + I ++ +P + I+ T +EQ + K L++LL Sbjct: 180 TLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRR 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 ++ +FCN K+D + +L+ G L+LHGD+ Q R + L +F +++V + Sbjct: 240 ETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCS 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ + V NF++ PE ++HRIGRT RAG G A + PE+A+ I + Sbjct: 300 DVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIEN 359 Query: 359 MLQIKLN-----WQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 +L + + A +A AE GGK R G + D Sbjct: 360 LLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAERPR- 418 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT 450 + V K L + + Sbjct: 419 PLAPERAANDQAPVERPA-----VEKTLAEQPVAERP 450 >UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform c n=3 Tax=Caenorhabditis elegans RepID=Q65XX1_CAEEL Length = 660 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 212/399 (53%), Gaps = 25/399 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ PA + N+N GY TPVQ ++P +LA +D+ A+TGSGKTAAF L Sbjct: 138 IEHFNEAG-FGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLP 196 Query: 61 LLQQIDASLFQ---------------TQALVLCPTRELADQVAGELRRLARFLPNTKILT 105 ++Q I A ALVL PTRELA Q+ E + + + N + Sbjct: 197 IIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS-YKSNIQTAI 255 Query: 106 LCGG-QPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFS 164 L GG + + Q + L+ HI++ATPGRL+D +++G + L LV+DEADRMLDMGF Sbjct: 256 LYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFE 315 Query: 165 DAIDDVIRF-APAS--RQTLLFSATWPEAIAAISGRVQRD-PLAIEIDST-DALPPIEQQ 219 I ++ P R T +FSAT+P+ I ++ +D + + + IEQ+ Sbjct: 316 PQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQR 375 Query: 220 FYETSSKGKIPLLQRLL-SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR 278 + K L +L + H + +VF TK+ + LN ++S+HGDL+Q Sbjct: 376 LLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQI 435 Query: 279 DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNS 338 +R++ L F +G +LVAT VAARGLDI ++ V+N++L D + +VHRIGRT R GN Sbjct: 436 ERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNL 495 Query: 339 GLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIAT 377 G+A SF + + +++ ++ N + P +A Sbjct: 496 GIATSFFNDKNRGIGRDLKNLI-VESNQEVPEWLHQVAA 533 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 150/427 (35%), Positives = 220/427 (51%), Gaps = 13/427 (3%) Query: 1 MTA-FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 M+ FS+L L ++ L GY TP+QAAA+P LAG D+ A+TG+GKTAAF L Sbjct: 1 MSNPFSSLG-LGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFML 59 Query: 60 GLLQQI--------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQP 111 L+++ ++ + LVL PTRELADQ+ ++ + LP + L GG Sbjct: 60 PSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMN 118 Query: 112 FGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVI 171 Q L+ I+VAT GRLLDH+++ + L+ + +V+DEADRMLDMGF D I ++ Sbjct: 119 MDKQTADLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIM 178 Query: 172 RFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIP 230 + P RQTLLFSAT+ I ++ P +E+ + + +EQ + K Sbjct: 179 QMLPRQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRN 238 Query: 231 LLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 LL+RL+ + +VFC TK+ V L SA ++HGD Q+ R +TL F +G Sbjct: 239 LLERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDG 298 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 + RVLVATD+AARGLDI L V+N+E+ PE +VHRIGRT RAG G+AIS E Sbjct: 299 NLRVLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQ 358 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGL 410 + I ++ KL + + + + + + A + Sbjct: 359 KMFESIKELTGNKLLIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQ-REKNT 417 Query: 411 DGADIGK 417 + Sbjct: 418 RPENAAN 424 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 136/386 (35%), Positives = 205/386 (53%), Gaps = 10/386 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F LN LP + + + TP+Q+ ++P L G D+ AKTGSGKTAAF + + Sbjct: 126 TFEELN-LPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAM 184 Query: 63 QQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 I LVL PTRELA Q+A + L + L GG G Q + Sbjct: 185 VHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLM-IRQTCLFGGAGRGPQAN 243 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+H P ++VATPGRL+D ++ G ++ +N LV+DEAD+MLDMGF I +I Sbjct: 244 DLRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKD 303 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQT++FSATWP+ I ++ DP+ + I + D I+Q + K+ + Sbjct: 304 RQTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEV 363 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L+ H+ ++F TK+ + + LN G A SLHGD Q RD L +F + +L Sbjct: 364 LNEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGIL 423 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLD+ +++V+N++ D E +VHRIGRTAR GLA++F E + Sbjct: 424 VATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRK 483 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAE 381 ++ ++ + + P ++A + + Sbjct: 484 LAKIM-TQAKQELPDWLKALADVTPK 508 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 135/372 (36%), Positives = 202/372 (54%), Gaps = 4/372 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L ++ P + + GY TP+Q +P L GKDV QA+TG+GKTAAF + L Sbjct: 88 FADLKLMRP-LMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLN 146 Query: 64 QIDAS-LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + L +V+ PTRELA Q+A E +LA + + + GG Q D L Sbjct: 147 RWRPHTLKGPIGVVMTPTRELALQIANEAEKLA-PSKRFRCVPVYGGTGMQRQLDGLTRG 205 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++V TPGR+LDHLQ+G++SL + V+DEADRMLD+GF D I+ +++ P+ RQTLL Sbjct: 206 CDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLL 265 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 SAT P++I + R RDP+ + + + I Q ++ K LL+R++ +P Sbjct: 266 MSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKP 325 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 C++F K+ + L A +HGDL Q R++ + F + L+ATDV Sbjct: 326 RQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVM 385 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 +RG+D+ L V+N++L D E +VHRIGRT R G G+AISF PE+ + I M+ Sbjct: 386 SRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMIN 445 Query: 362 IKLNWQTPPANS 373 + Sbjct: 446 RLIEEDRVEGFE 457 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 137/438 (31%), Positives = 216/438 (49%), Gaps = 23/438 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 ++AF+ + L N+ Y+ TP+Q A+P +AG+D+ A+TGSGKTAAF Sbjct: 420 VSAFAEI-HLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFP 478 Query: 61 LL-----QQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112 ++ Q+ + AL+L PTREL+ Q+ E ++ + + K++ GG P Sbjct: 479 IICGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFS-YKTGLKVVVAYGGAPI 537 Query: 113 GMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 Q +L+ I+VATPGRL+D +++ VSL + L +DEADRMLDMGF I ++ Sbjct: 538 SQQFRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVE 597 Query: 173 FA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKG 227 P +RQT+LFSAT+P I ++ + + + + + I Q+ Sbjct: 598 QMDMPPPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTD 657 Query: 228 KIPLLQRLLSLHQPSSC-------VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDR 280 K L LL + +VF TK+ A+ L G +A ++HGD Q +R Sbjct: 658 KRYHLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMER 717 Query: 281 DQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGL 340 ++ L F +G+ ++VATDVAARGLDI + V+NF+L + +VHRIGRT RAG SGL Sbjct: 718 ERALKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGL 777 Query: 341 AISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV 400 A +F A + +++ + N + P + A + GG + Sbjct: 778 ATAFFNDGNLSLAKSLVELM-QESNQEVPSWLNQYAERPSYGGGRSRYGGGRFGGHDFRS 836 Query: 401 LGALTGDIGLDGADIGKI 418 L + + G + Sbjct: 837 SSQLKREDYYSPSPYGDV 854 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 138/393 (35%), Positives = 201/393 (51%), Gaps = 18/393 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F P + + GY T +Q P L+G+D+ A+TGSGKT AF L Sbjct: 173 IRTFEQ-GQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLP 231 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + ++A LVL PTRELA QV E R + + + GG P Q Sbjct: 232 AIIHVNAQAPLKHGDGPVVLVLVPTRELAMQVQAEATRFGK-MAGLMNTAIFGGVPRYNQ 290 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 + L+ I +ATPGRLLD L+ G +L + LV+DEADRMLDMGF I ++ Sbjct: 291 ANDLRRGVEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIRRIVSQIR 350 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRD-PLAIEIDSTD--ALPPIEQQFYETSSKGKIPLL 232 RQT ++SATWP+ + +++ R+ P+ + + +T A P ++Q+ S K + Sbjct: 351 PDRQTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMF 410 Query: 233 QRLLSLHQPS--SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 L P +VF TKK A+ + +A S+HGD EQR+RD+ L F G Sbjct: 411 FDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTG 470 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC----- 345 VLVATDVA RGLDIK++E VVN+++ E +VHRIGRT RAG G +++F Sbjct: 471 RCNVLVATDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRIGRTGRAGAVGNSLTFITNDTH 530 Query: 346 APEEAQRANIISDMLQIKLNWQTPPANSSIATL 378 P+ + A I ++ + P + +A + Sbjct: 531 TPDRVRMAKDIVKCME-DVKQTPPQSLYDMAAI 562 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 145/449 (32%), Positives = 229/449 (51%), Gaps = 10/449 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F L L L++ G+ + +Q +P +L + + QA+TG+GKTAAFG+ Sbjct: 1 MQRFEDFG-LSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L+ IDA +AL+L PTRELA+QV+ E+ L + + K+L + GG Q L Sbjct: 60 PILETIDAD-KTVRALILAPTRELANQVSDEIYSL-KGEKDIKVLAVYGGASIENQIKRL 117 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + I+V TPGR++D + K + ++ L+ V+DEAD ML+MGF + I++++ ++ Sbjct: 118 KAGVDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKK 177 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI-EQQFYETSSKGKIPLLQRLLSL 238 L FSAT P+AI AI+ R + ++++ + + EQ +YE + K L R+L Sbjct: 178 MLFFSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDY 237 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 Q +VFC TK + V + L A +HGD+ Q R + L F +LVAT Sbjct: 238 EQNFYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVAT 297 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARG+D+ +L V+N+ + + E +VHRIGRT RAG+ G+AI+F P EA + I Sbjct: 298 DVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIKR 357 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + + + + P I + E +D K A G D + + Sbjct: 358 VTKTDIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLIEGRDARQV--L 415 Query: 419 AVHPAHVYVAVRQAVAHKAWKQLQGGKIK 447 A HVY + ++ K+K Sbjct: 416 ASVLRHVYED---EFLPDNYNEIADVKVK 441 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 537 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 142/389 (36%), Positives = 215/389 (55%), Gaps = 3/389 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 M F+ N L P L + ELG+ + T +Q +P I +D+ A+TG+GKTAAF L Sbjct: 1 MNLFTETN-LSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSL 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 +L ID + Q LVLCPTREL Q+ +++ ++++ N K + GG Q SL Sbjct: 60 PILDMIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + P IIV TPGR++D + + + + LV+DEAD ML MGF D ++ ++R P ++ Sbjct: 120 RDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKH 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSL 238 T LFSAT + + IS P I + S + + I+ +FY + K L+RL+ Sbjct: 180 TYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLIDA 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + Q V D L + G +A +LHGDL Q RD + +F + +LVAT Sbjct: 240 NPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ SL V+++ L DPEV VHR GRT RAG G+++S PEE+++ I Sbjct: 300 DVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKM 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCI 387 +I + + P +I + + Sbjct: 360 STKIDIVEKKVPTGDAIIKAQVGGVFEKL 388 Score = 43.7 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 372 NSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTG--DIGLDGADIGKIAVHPAHVYVAV 429 + +M + GKK +++ D+L + DIG I + + V Sbjct: 484 DRKPRRNNTDMVRFFFNLGKKDQLKKMDMLEIINKSTAKSKKRPDIGDIEILEKFSFFEV 543 Query: 430 RQAVAHKAWKQLQGGKIKGKTCRVRLL 456 ++ + K +Q K KGK R + Sbjct: 544 EKSFKDEVMKGMQSQKFKGKEMRAEIA 570 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 138/376 (36%), Positives = 210/376 (55%), Gaps = 5/376 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F++++ L + L + GY TP+QA +P L G DV QA+TG+GKTA+F + +L Sbjct: 13 TFASMD-LSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPIL 71 Query: 63 QQIDASL--FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + +D QAL+L PTRELA QV E+ +L+ L + GG+P Q D L+ Sbjct: 72 ELLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLK-INCAAVYGGKPIKSQVDKLK 130 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H++V TPGR+LDH+ +GT+ + +V+DEADRMLD+GF I+ +++ P RQT Sbjct: 131 KGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQT 190 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LL SAT P IA ++ R +P + D ++ IEQ+++ K LL +LL Sbjct: 191 LLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLRE 250 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 +P +VFC TK+ V L + + ++HGDL Q RD+ + F +GS R LVATD Sbjct: 251 EPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATD 310 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 V RG+D+ ++ +VNF++ + +VHR+GRT R G G+A +F P+E I + Sbjct: 311 VIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEER 370 Query: 360 LQIKLNWQTPPANSSI 375 + L + Sbjct: 371 INKLLKRDEMRDFEPV 386 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 144/393 (36%), Positives = 216/393 (54%), Gaps = 23/393 (5%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F+ L L + L ++ GY T TP+QA A+PA L G+D+ + A+TGSGKTAAF L + Sbjct: 69 NGFTALG-LSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPI 127 Query: 62 LQQIDA-------------------SLFQTQALVLCPTRELADQVAGELRRLARFLPNTK 102 L Q+ QAL+L PTRELA+QV +R+ + + Sbjct: 128 LHQLSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLY 187 Query: 103 ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMG 162 + L GG + Q +L+ IIVATPGRLLDH+ V+L L LV+DEADRMLDMG Sbjct: 188 SVPLVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMG 247 Query: 163 FSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE 222 F+D I+ ++ PA RQT++ SATW + I+ +DP I I A I+++ Y Sbjct: 248 FADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETAH--IDEKVYF 305 Query: 223 TSS-KGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRD 281 + K LL++L+ + ++F TK+ + V + L + A LHGDL Q R+ Sbjct: 306 CDNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRN 365 Query: 282 QTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLA 341 + + +G ++VATDVAARGLD+ ++ V N++L E +VHRIGR+ RAG +G+A Sbjct: 366 RIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIA 425 Query: 342 ISFCAPEEAQRANIISDMLQIKLNWQTPPANSS 374 I+ C+ ++ ++ I+ L+ +N Sbjct: 426 INLCSRDDRRQFGNIARYLKRDINEAQVEGLEP 458 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 155/401 (38%), Positives = 214/401 (53%), Gaps = 8/401 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F L V P Q+ L GY TP+Q A+P IL GKD+ A+TG+GKTAAF + Sbjct: 1 MTDFDKLGVAKPFQI-ALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVP 59 Query: 61 LLQQID-----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 LLQ++ A+ ++L+L PTRELADQ+ ++ A + GG PF Q Sbjct: 60 LLQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTK-MYTSCVVGGVPFPPQ 118 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +LQ ++VATPGRLLD +K VS D L V+DEAD+MLD+GF ++++ P Sbjct: 119 FHALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLP 178 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQR 234 RQTL FSAT P I +S R +P+ + + + QQ K PLL+ Sbjct: 179 KKRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKE 238 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 LL + +VF TKK + LN G A ++HGD+ Q +R +TL +F G + Sbjct: 239 LLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKT 298 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATDVAARG+D+ + V+NF++ E +VHRIGRTARAG SG AI+FC PE+ Sbjct: 299 LVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLR 358 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKM 395 I ++ K+ + GK+AK Sbjct: 359 AIQKLIGKKIAEMDGFTFFPSDREPKSARSNAQVAGKRAKG 399 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 153/405 (37%), Positives = 214/405 (52%), Gaps = 8/405 (1%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F L + GY+T TP+Q ALP L G+D+ A+TGSGKTA F L Sbjct: 25 IENFEAFG-FAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLP 83 Query: 61 LLQQIDAS-----LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 LLQ+I + Q ALVL PTRELA Q+ E+ LAR + + + GG G Q Sbjct: 84 LLQKIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNM-RIRRAVVLGGVSKGPQ 142 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 ++L+ H++VATPGRLLD + T L + TLV+DEADRM DMGF I ++ P Sbjct: 143 INALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLP 202 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQR 234 +R+T LFSAT P I + + ++P +++ S + I+Q+ + K L Sbjct: 203 EARRTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHT 262 Query: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 +L+ +VF TK+ V + L G SA + HG+ Q R + L F G RV Sbjct: 263 ILADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRV 322 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354 LVATD+AARG+D+ ++ VVNF++ DPE +VHR+GRTAR GNSG+AIS C P E Q Sbjct: 323 LVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEIT 382 Query: 355 IISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 I M++ KL ++ E G ++ R Sbjct: 383 AIERMMKQKLEVIADVGGEALPMPERRQHHRAETGPRRDGDRQHH 427 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 158/418 (37%), Positives = 223/418 (53%), Gaps = 10/418 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 FS + L A L L EL Y T +Q A+PAI+ GKD+ A+TG+GKTAAF L +L+ Sbjct: 3 FSDFD-LSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILE 61 Query: 64 QI-----DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 ++ + QT+ LVL PTRELA+QV ++ A+ LP K L + GG Q + Sbjct: 62 KLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLP-FKTLPVFGGVSSYPQIQA 120 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I+VATPGRLLD + +SL+ ++TLV DEADRM DMGF I +++ P R Sbjct: 121 LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR 180 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLS 237 Q LLFSAT+P + ++ + +DPL I+I+ ++ I Q+ K+ LL + Sbjct: 181 QNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFG 240 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 + +VF TK+ L+ +G S +LHGD Q R +TL +F NG ++LVA Sbjct: 241 VESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVA 300 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLDIK L V+N EL PE +VHRIGRT RAGN G+AIS +E + I Sbjct: 301 TDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIE 360 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 ++ KL ++ A L + + D G + Sbjct: 361 KLIDKKLIRESFSGFE--ADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREF 416 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 136/399 (34%), Positives = 199/399 (49%), Gaps = 7/399 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F + + ++ GY T TP+Q A+P +L G+DV A+TG+GKTAAF L ++ Sbjct: 2 SFKQFS-FDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60 Query: 63 QQIDASL----FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 Q++ + LVL PTRELA Q+ L + + GG Q + Sbjct: 61 QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELG-VEAGIRSAAVFGGVGAMPQIQA 119 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 + +IVA PGRLLD + +G + LD ++TLV+DEADRMLDMGF I ++ P R Sbjct: 120 ARR-SSVIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRR 178 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSL 238 Q LLFSAT P+ I ++ ++ P +++ +T +E FY S K LL ++L Sbjct: 179 QNLLFSATMPDDIRDLADKILYRPATVQVANTAPAKTVEHVFYPVSQHLKNNLLFKVLEQ 238 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 S +VF TK + + L G A L G++ Q R + L F +GS +V+VAT Sbjct: 239 TDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVAT 298 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 D+AARG+D + VVN ++ E + HRIGRT RAG SG A SF ++ + I Sbjct: 299 DIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIEK 358 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRP 397 + + +T G K A R Sbjct: 359 AVGYSIEHRTLEDFDYDKPNTHPAPAKRGGGRKPAADRK 397 >UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QWG1_IDILO Length = 474 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 225/453 (49%), Positives = 308/453 (67%), Gaps = 1/453 (0%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ LN LPPA LT L+E+GY MTPVQ+ +LP IL D V+A TGSGKT AF L LL Sbjct: 23 FNQLN-LPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLA 81 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 +++A F QALVLCPTRELA QVA E+R+LA+ + N KILTLCGG+P +Q +SL+H Sbjct: 82 KLEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGA 141 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H++V TPGR+LDHL++ V L L TLV+DEADRML+MGF D+++ +++ P +RQTLLF Sbjct: 142 HVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQTLLF 201 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSS 243 SAT+P+ IAA++ +V IE A P IEQ FY +++ L+ LL HQP + Sbjct: 202 SATYPKNIAALAEQVTTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLVMNLLGDHQPEN 261 Query: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303 C+VFCNTK + + + + L S L+LHG+LEQ+DRDQ +++F+NGSARVL+ATDVA+R Sbjct: 262 CLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIATDVASR 321 Query: 304 GLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363 GLDI L+LV++ +A D + H HRIGRT RAG G+AI+ A ++ + ++ D Sbjct: 322 GLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRLLEDTFAEP 381 Query: 364 LNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPA 423 + + PA S+ L+A M+T+ + GGKK K+RPGD++GALT D L DIGKI + Sbjct: 382 IQVKPAPALSNNRPLKANMSTIQVSGGKKDKLRPGDIVGALTKDNVLSADDIGKIKLEST 441 Query: 424 HVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456 +VAV +A A + KIKGK R ++L Sbjct: 442 FGFVAVNSRLAKHALGLINNNKIKGKKFRAKVL 474 >UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8WWC4_CAEBR Length = 692 Score = 535 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 207/414 (50%), Gaps = 40/414 (9%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + FS PA + N+ GY TPVQ ++P +L +D+ A+TGSGKTAAF L Sbjct: 162 IENFSDAG-FGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLP 220 Query: 61 LLQQIDASLFQ------------------------------TQALVLCPTRELADQVAGE 90 ++Q I A ALVL PTRELA Q+ E Sbjct: 221 IIQHIMAGGPDMIKTVSSATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQIHKE 280 Query: 91 LRRLARFLPNTKILTLCGG-QPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNT 149 + + + N + L GG + + Q + L+ HI++ATPGRL+D +++G + L Sbjct: 281 AAKFS-YKTNLQTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRY 339 Query: 150 LVMDEADRMLDMGFSDAIDDVIRF-APAS--RQTLLFSATWPEAIAAISGRVQR-DPLAI 205 LV+DEADRMLDMGF I ++ P R T +FSAT+P+ I ++ + + + + Sbjct: 340 LVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFL 399 Query: 206 EIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ-PSSCVVFCNTKKDCQAVCDALNE 263 + IEQ+ + K L +L + +VF TK+ + LN Sbjct: 400 AVGRVGSTSENIEQRLLWVNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNR 459 Query: 264 VGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPE 323 ++S+HGDL+Q +R++ L F +G +LVAT VAARGLDI ++ VVN++L D + Sbjct: 460 QQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSD 519 Query: 324 VHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIAT 377 +VHRIGRT R GN G+A SF + + ++ ++ N + P +A Sbjct: 520 EYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLI-MEANQEVPEWLHQVAA 572 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 535 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 144/418 (34%), Positives = 211/418 (50%), Gaps = 14/418 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T F L L L L+ GY TP+QA A+P +L G+D+ A+TG+GKTAAF L Sbjct: 3 ITTFDQLG-LSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP 61 Query: 61 LLQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + ++ + QT + LVL PTRELA Q+A + + K+ ++ GG G Sbjct: 62 SIDRLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGA-MAGLKVHSIVGGTSVGKD 120 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 R+ L I+VATPGRLLD + + L+A+ LV+DEAD+MLD+GF A+ + P Sbjct: 121 RNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVP 180 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQR 234 A RQTL FSAT P+ I + G+ R+P+ + + I+Q + K L++ Sbjct: 181 AERQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEM 240 Query: 235 LLSLH-----QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFAN 289 +L + +VF TK V L + G + ++HG+ Q R + L F Sbjct: 241 ILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKR 300 Query: 290 GSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 +L+ATDVAARG+DI + V+N+EL PE +VHRIGRTARAG G+AI+FCA +E Sbjct: 301 AKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDE 360 Query: 350 AQRANIISDMLQIKLNWQTPPA-NSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTG 406 I + + P ++ G + K +P T Sbjct: 361 RAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQGGTN 418 >UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryota RepID=DDX3_DROME Length = 798 Score = 535 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 137/408 (33%), Positives = 201/408 (49%), Gaps = 30/408 (7%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F + L N+ Y TPVQ A+P I+ G+D+ A+TGSGKTAAF + Sbjct: 294 ITSFDDV-QLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVP 352 Query: 61 LLQQI---------------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILT 105 +L Q+ LVL PTRELA Q+ E ++ A + + Sbjct: 353 ILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA-YRSRMRPAV 411 Query: 106 LCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSD 165 L GG Q L H+IVATPGRL D + +G V L+ + LV+DEADRMLDMGF Sbjct: 412 LYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP 471 Query: 166 AIDDVIRF--APA--SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQF 220 I ++ P RQTL+FSAT+P+ I ++ + + + + I Q Sbjct: 472 QIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTI 531 Query: 221 YETSSKGKIPLLQRLL-------SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHG 273 K L LL + S ++F TKK ++ + L + S+HG Sbjct: 532 LWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHG 591 Query: 274 DLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTA 333 D Q++R++ L F +G +LVAT VAARGLDI ++ V+NF+L D E +VHRIGRT Sbjct: 592 DRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTG 651 Query: 334 RAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAE 381 R GN G+A SF + + + ++L I+ + P +++ Sbjct: 652 RMGNLGVATSFFNEKNRNICSDLLELL-IETKQEIPSFMEDMSSDRGH 698 >UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZ17_PHYIN Length = 2091 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 215/469 (45%), Gaps = 35/469 (7%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + ++ L + + GY +Q ALPAI++G+DV AKTGSGKT AF L Sbjct: 1489 LQKWTQCG-FSVRMLQLIKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFLLP 1547 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 + + + A +++ P RELA Q+ E R+ ++ L + + GG Q Sbjct: 1548 MFRHVLAQPPLQENEGPIGIIMAPARELAQQIYVEARKFSKGL-GLRATAVYGGSSVSEQ 1606 Query: 116 RDSLQHAPHIIVATPGRLLDHL---QKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIR 172 +L+ I++ TPGR++D L VSL + +V+DEADRM DMGF I ++ Sbjct: 1607 IANLKRGSDIVICTPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMM 1666 Query: 173 FAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPL 231 RQTLLFSAT+P ++ +++ +V + P+ I + + I Q K Sbjct: 1667 NIRPDRQTLLFSATFPRSVESLARKVLKKPVEITVGTRSTASGDITQYVEVREEDDKFMR 1726 Query: 232 LQRLLS-LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 L +LL ++ + +VF N ++ C + L + G ALSLHG +Q DRD T+ F Sbjct: 1727 LLQLLGLWYEKGNILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRK 1786 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 V+VAT VA RGLD+K L LV+N+ E +VHR+GRT RAG G A +F +P+E Sbjct: 1787 VRTVMVATSVAGRGLDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISPDEE 1846 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGL 410 + + + L+ PP +++A K K G+ G Sbjct: 1847 EYSVDLVKALE-NAKQTIPPELTALAE----------GFTAKVKRGEARYHGSGFKGKGF 1895 Query: 411 DGADIGK------IAVHPAH------VYVAVRQAVAHKAWKQLQGGKIK 447 + + + + V AV ++ I Sbjct: 1896 TFDETERNETQRTADLQRRQYELDQGILVEDSGAVDDDDMEEPSKENIA 1944 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 141/404 (34%), Positives = 204/404 (50%), Gaps = 8/404 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F L L L T TP+Q A+P LAG+D+ A+TG+GKTAAF L L Sbjct: 4 TTFDGFG-LAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPL 62 Query: 62 LQQID-----ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L + + T+AL+L PTRELA Q+A + L+ P + GG Q Sbjct: 63 LHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTP-ISHCVVFGGVSVRPQI 121 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +L I+VATPGRLLD +++ + L L++DEADRMLDMGF + ++ P Sbjct: 122 QALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPD 181 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSKGKIPLLQRL 235 RQ+++FSAT P+ I +S ++ +P + + + I Q + + K L Sbjct: 182 DRQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDF 241 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 +S + VVF TK + L++ G AL++HG+ Q R + L F +G VL Sbjct: 242 VSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVL 301 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATD+ ARG+ + + VVNF+L +PE +VHRIGRTARAG SG AI+ P E + Sbjct: 302 VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQ 361 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 I + I L Q ++ E + G + + R G Sbjct: 362 IIKLTGIDLTPQATDYTVNVLAGELDADDGKRRGPRNQQPRNGR 405 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 151/450 (33%), Positives = 231/450 (51%), Gaps = 11/450 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L L L ++ + G+ +P+QAAA+P ILAG+D+ QA TG+GKTAAFGL L Sbjct: 15 TFDDLG-LKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPAL 73 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 I+ + LV+ PTRELA QV+ EL + R + + +T+ GG + Q D +Q Sbjct: 74 NNINPN-DGVGILVITPTRELATQVSDELFKYGRNI-GARTVTVYGGSSYNRQIDLIQRG 131 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 ++VATPGRLLD L+K + A + +V+DEAD MLDMGF D I+++ + P++RQTLL Sbjct: 132 ASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLL 191 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P+ I ++ R+ +P I I + I Q++Y + + RL+ Sbjct: 192 FSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEAC 251 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VFC TK + + + L+ G A LHGD+EQR R+ + F N +VLVATDVA Sbjct: 252 QKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVA 311 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+ + ++ V N+ + +DPE +VHRIGRT RAG G AI+ P E + I + Sbjct: 312 ARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKTKVG 371 Query: 362 IKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI-AV 420 + P+ + + + + I+ +L L DI + + Sbjct: 372 TTMTHAFVPSKNDLRAINLKSIATSIE-EHNIYDEAHQILDMLKEDIDEPTIMFKLVSMI 430 Query: 421 HPAHV-----YVAVRQAVAHKAWKQLQGGK 445 + + ++ + Sbjct: 431 LDRQAIQGPNSIGIPAEKLAAILERADKRR 460 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 145/450 (32%), Positives = 213/450 (47%), Gaps = 13/450 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F+ L L A L + LGY TPVQ A+P +L G+D+ A TG+GKTAAF L Sbjct: 1 MQNFADLG-LSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLP 59 Query: 61 LLQQIDASLFQ---TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 +L + + LV+ PTRELA Q++ ++ R + T+ GG P+G Q + Sbjct: 60 ILSTLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKT-GHYVTTVFGGTPYGPQIN 118 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 ++ +++ATPGRL D + KG V L + +LV+DEADRMLDMGF A+ ++ PA Sbjct: 119 EIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPAD 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLL 236 RQTLLFSAT +I G + DP +EI + +EQ ++ K LLQ LL Sbjct: 179 RQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALL 238 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VF TK + +AL + G A S+H D Q R + L F G +LV Sbjct: 239 EEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILV 298 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATDV ARG+D+ ++ V+NF+L PE +VHRIGRT RAG G A+SF E + + I Sbjct: 299 ATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDI 358 Query: 357 SDMLQIKLNWQTPPA-------NSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIG 409 ++ + + + G Sbjct: 359 EKLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKRD 418 Query: 410 LDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 + + + ++A +++ Sbjct: 419 FERRSDSRAEGRSDNRPGRGKRAEGKRSFD 448 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 147/419 (35%), Positives = 216/419 (51%), Gaps = 10/419 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +FS L L L+ + GY T TP+QA A+P +LA +DV A+TG+GKTAAF L +L Sbjct: 65 SFSELG-LSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123 Query: 63 QQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 ++ + L+L PTRELA QV R + + L GG FG Q L Sbjct: 124 TLLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHK-LNVALLIGGVSFGDQDTKL 182 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 +++ATPGRLLDH+++G + L + LV+DEADRMLDMGF I+ + + P +RQ Sbjct: 183 LRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 242 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKG--KIPLLQRLL 236 TL FSAT P I + + +P+ +E+ A I Q + + K L+ L+ Sbjct: 243 TLFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELI 302 Query: 237 SLHQP-SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 + +VFCN K+D V +L + G + + LHGD++Q R Q L +F G A +L Sbjct: 303 RNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLL 362 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VA+DVAARGLDI ++ V N+++ E +VHRIGRT RAG +G AI ++A+ Sbjct: 363 VASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAA 422 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGAD 414 I ++ + WQ P + E + + G + + D Sbjct: 423 IEKLIGNAIPWQGEPLGEA-PPREKRSRGGDRREERGERSERNKRSGRGRSERKAEVED 480 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 155/393 (39%), Positives = 233/393 (59%), Gaps = 3/393 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F ++ ++ P L G + TPVQ A+P +L+G+DV QA+TG+GKT AF L + Sbjct: 3 TEFISMGII-PELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 LQ+ID Q QAL+L PTRELA Q+ EL++LA + K+L GGQ Q L + Sbjct: 62 LQRIDIDKEQVQALILTPTRELAIQITSELKKLAAAV-GAKVLAAYGGQDVDAQIRKLNN 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 +PHI+VATPGRL+DH+++ T++L L LV+DEAD+ML MGF + +++ P +RQT+ Sbjct: 121 SPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTM 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ I ++ + P+ I+I S + L I+Q ET+ +G+ L ++ + Sbjct: 181 LFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQR 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P V+FC TK + + L ++G + LHGDL Q R+Q + RF + ++LVATDV Sbjct: 241 PYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDV 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V NF++ D E+++HRIGRT RAG G AI+ +P + I + Sbjct: 301 AARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERSI 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 L +T A+ +I A ++ K Sbjct: 361 NAILERRTIEADGTIVKNTAPRSSSEGKSYDKK 393 >UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Trypanosomatidae RepID=DDX17_TRYBB Length = 568 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 142/407 (34%), Positives = 202/407 (49%), Gaps = 10/407 (2%) Query: 1 MTAFSTL-NVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 M++F L ++PP L L + TPVQA + P +L+G+D+ AKTGSGKT F + Sbjct: 99 MSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMV 158 Query: 60 GLLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 L I +VL PTRELA Q+ E +++ + + GG P G Sbjct: 159 PALAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPG--DVYCGCVYGGAPKGP 216 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q L+ HI+VATPGRL+D L ++L + LV+DEADRMLDMGF + + Sbjct: 217 QLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQI 276 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLL 232 RQT++FSATWP I ++ Q+ + I + ST+ A + Q+F T K L Sbjct: 277 RPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDEL 336 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 ++L+ H+ +VFC K+ + L G A+++HGD EQR R+ L RF Sbjct: 337 RKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPR 396 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 LVATDVAARGLDIK LE V+N++ + +VHRIGRT RAG G + +EAQ Sbjct: 397 LCLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQI 456 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 + L L + A+ + + Sbjct: 457 TPSVLKELIGILERAQQEIPDWMIEWNAQQPRYQVKRNRGMNGFGRH 503 >UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 (DDX43) n=2 Tax=Eumetazoa RepID=B8A609_DANRE Length = 719 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 122/400 (30%), Positives = 193/400 (48%), Gaps = 12/400 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F P + N+ +G+ TP+Q+ A P +L G D+ A+TG+GKT A+ L Sbjct: 278 TFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGF 337 Query: 63 QQIDASL------FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 +D LVL PTRELA Q+ E + + K + + GG Q Sbjct: 338 IHMDGQPMPRDKRNGPGMLVLTPTRELALQIEAECNKYSY--KGFKSICIYGGGDRNAQI 395 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 + I++ATPGRL D ++L ++ LV+DEADRMLDMGF I +I Sbjct: 396 KVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRP 455 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQR 234 RQT++ SATWP + ++ +DP+ + + + D A+ ++Q K + Sbjct: 456 DRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFD 515 Query: 235 LLSLHQP-SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 + +P ++F K + L G + SLHGD EQ DR++ L F +G R Sbjct: 516 FIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVR 575 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +LVATD+A+RGLD+ + V N++ + E +VHR+GRT RAG SG +++ E+ + A Sbjct: 576 ILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVA 635 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 + +L+ P +A + G ++ Sbjct: 636 AELITILERS-GQDVPEELVLMAERYEKHRREKEMFGPRS 674 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 157/420 (37%), Positives = 237/420 (56%), Gaps = 5/420 (1%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F TL LP + +LG+ T + +QA A+PA+L G+D+ A+TG+GKTAAFGL LL Sbjct: 51 FDTLG-LPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLA 109 Query: 64 QIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++A QALVL PTRELA QVA + A LP+ ++L++ GG P+ Q+ +L+ Sbjct: 110 SVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALR 169 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 H++V TPGR++DHL++G + LD LV+DEAD ML MGF++ ++ + +AP RQ Sbjct: 170 DGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQV 229 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLH 239 LFSAT P AI AI+ DP+ I + + + Q + + K+ L R+L+ Sbjct: 230 ALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRILATS 289 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + +VF T+ + V AL E G SA ++ GD+ Q++R++ + R +G+ VLVATD Sbjct: 290 DADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATD 349 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARGLD+ + LVVNF++ + E +VHRIGRT RAG +G A+SF P E + I + Sbjct: 350 VAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIENT 409 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 +++ L P+ ++ A +A DG + G + Sbjct: 410 IKVSLEEIDIPSPRDVSAHRAARLLDSAPARTQAGRLDLYKQLVRNLVTTGDGEEAGVVD 469 Score = 59.9 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%) Query: 377 TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHK 436 A + G K + PG ++GA+TG+ GL GAD+GKI + + V + + Sbjct: 551 RRPAAGTRYRVAVGHKDGVNPGGIVGAITGEGGLTGADVGKIDIFGSFSLVDITAPLDGA 610 Query: 437 AWKQLQGGKIKGKTCRVRLLK 457 +L ++ G+ R+ + + Sbjct: 611 QLDRLSRARVAGRALRLTVDR 631 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 135/454 (29%), Positives = 229/454 (50%), Gaps = 19/454 (4%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F +++ L E ++ T VQ A+P + G+D+ VQ+KTGSGKT AF + + Sbjct: 5 KFEDMSI-SKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + +++ L A+VL PTRELA QV R + + + + + GG P Q L+ Sbjct: 64 ENLNSGLE---AIVLVPTRELAQQVERVARSIGKA-HGKRTVVIYGGAPMERQIAGLK-G 118 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 +++ TPGR++D +++G ++L+ + V+DEADRMLDMGF D I +++ P +Q +L Sbjct: 119 ASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMML 178 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT P I +++ R ++P I + + + Q + E KI L LL + Sbjct: 179 FSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERG 238 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 ++FCNT++ + + + L + G A +LHGD+ Q R +T+ F G +LV+TDVA Sbjct: 239 KY-LIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVA 297 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 ARG+D+ + VVN+++ P+ +VHRIGRT R G AI+F E+ + I D + Sbjct: 298 ARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIEDFIG 357 Query: 362 IKLNWQTPPANSSIATL------EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 ++ I + + K ++ D++ + ++G+ I Sbjct: 358 KRIPKMEIKNVGKIKERIDYKEISDIFGMVKFNFELKNELSEWDLIK-IANNVGIGENSI 416 Query: 416 GKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGK 449 G I + + V A K + ++ K Sbjct: 417 GNIILEGKRGSMKVHYRSAPKV----KKMRVFKK 446 >UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO Length = 956 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 137/437 (31%), Positives = 207/437 (47%), Gaps = 29/437 (6%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F PP L ++ + G+L TP+QA P L +D+ AKTGSGKT + + Sbjct: 489 TFEASG-FPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGYLIPAF 547 Query: 63 QQIDASLFQTQ----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + Q LVL PTRELA Q+ E+ + R L GG P G Q Sbjct: 548 ILLRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRS-SRVSCTCLYGGAPKGPQLKE 606 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L I+VATPGRL D L+ + ++ LV+DEADRMLDMGF I ++ P R Sbjct: 607 LTRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 666 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD---ALPPIEQQFYETSSKGKIPLLQRL 235 QTL+++ATWP+ + I+ + +P+ + I S D A I Q K L ++ Sbjct: 667 QTLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQI 726 Query: 236 LS-LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294 L + S ++FC+TK+ C + ++ A ++HGD Q +RD L +F +G + + Sbjct: 727 LRAQERGSKVIIFCSTKRLCDQLARSIG-HQFGAAAIHGDKSQGERDWVLNQFRSGKSPI 785 Query: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGL-------AISF--- 344 LVATDVAARGLDIK + +V+N++ E +VHRIGRT RAG +G+ A + Sbjct: 786 LVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVNVAAHMIATTIWMV 845 Query: 345 --CAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV-- 400 EE + ++ + + + + + ++ DV Sbjct: 846 VDVDVEEEGLMVEEKLLTEVGIEVLAVV----LKDRSRSRSYDRFERPRVSRFDEKDVTA 901 Query: 401 LGALTGDIGLDGADIGK 417 G+ + G+ G Sbjct: 902 PGSEAPESGMSPMSPGA 918 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 129/385 (33%), Positives = 195/385 (50%), Gaps = 11/385 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F L N + + TP+QA P L GKD+ A+TGSGKT +F L L Sbjct: 128 KFEHA-PFENEVLNNFKLKAFTSPTPIQAQGWPMALTGKDMVGIAQTGSGKTLSFVLPAL 186 Query: 63 QQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 A + LVL PTREL Q+ RF N + + GG Q+ Sbjct: 187 IHARAQIPLRSGDGPIVLVLAPTRELCLQIKDVFDEYCRFF-NMRCTAVYGGVSSYTQKR 245 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 + ++V PGRL+D ++G + + + LV+DEADRMLDMGF + +I Sbjct: 246 DISMGCEVVVGCPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIVNTNPD 305 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQRL 235 RQTL++SATWP+ + ++ ++ + + I S + I+Q S K L Sbjct: 306 RQTLMWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKANKLHES 365 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L+ + ++F NTK+ C + D L+ G A+++HGD Q RD+ + F +G +L Sbjct: 366 LNEKKNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNIL 425 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAG-NSGLAISFCAPEEAQRAN 354 +ATDVAARGLDIK++ LV+N++ + E +VHRIGRTAR GL+ SF E + A Sbjct: 426 IATDVAARGLDIKNVALVINYDFPNNIEDYVHRIGRTARGDVTEGLSHSFFTSENSACAK 485 Query: 355 IISDMLQIKLNWQTPPANSSIATLE 379 + +L+ + N P ++T + Sbjct: 486 ELVKILK-EANQDVPSKLIDMSTTK 509 >UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC93_SULNB Length = 453 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 193/441 (43%), Positives = 283/441 (64%), Gaps = 4/441 (0%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MTAF+T+ +P A L L LG+ TMT +Q ++ IL GKD+ Q+KTGSGKT AFG+ Sbjct: 1 MTAFNTIPNIPEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIP 60 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + D + Q +V+ PTRELA+QVA ELR++A + N KILTL GG P Q DSL Sbjct: 61 AVMGTDVKSNKPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLA 120 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 HI++ TPGR+ DHL KGT++L+++ TLV+DEADRMLDMGF + I + P +QT Sbjct: 121 KGAHILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQT 180 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LLFSAT+P I +++ + +DPL I++D+ I + YET K L L+ ++ Sbjct: 181 LLFSATFPPKIESLAKALLKDPLTIKVDTVQEAMKINELVYETP--DKFKTLNALIGSYK 238 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P S ++FCNTK + ++ D L + G S + +HGDL+QR+R++ ++ F+N S R++VATDV Sbjct: 239 PDSLLIFCNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDV 298 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 A+RGLDIK + LV+N++L +D EV+ HRIGRT RA +G+AIS AP ++++ + I+ Sbjct: 299 ASRGLDIKDISLVINYDLPFDKEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITSQA 358 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420 + + + +E T+C++GGKK K+R GD+LG +IG+D +IGKI + Sbjct: 359 KQADPKDL--RVDANFKMLSEFDTICLNGGKKTKLRAGDILGTFCKEIGIDNTEIGKIII 416 Query: 421 HPAHVYVAVRQAVAHKAWKQL 441 Y+A+ V K K L Sbjct: 417 TDTKAYIALHHTVVDKVLKAL 437 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 147/416 (35%), Positives = 206/416 (49%), Gaps = 9/416 (2%) Query: 5 STLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ 64 + L ++ P L GY TP+QA A+P +L G D+ A+TG+GKTAAF + +LQ Sbjct: 7 NELKIINP-IQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQS 65 Query: 65 I------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 + Q +ALVL PTRELA Q+A LP + L + GG Q Sbjct: 66 LAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLP-LRTLVIFGGVGQAPQTRK 124 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178 L+ I+VATPGRLLD + +G + L + V+DE D+MLDMG + +I + P R Sbjct: 125 LEKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRER 184 Query: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLS 237 Q +LFSAT P I ++ + + P+ I + L IEQ+ Y K LL L Sbjct: 185 QNMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLK 244 Query: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 ++ S +VF TK + LN+ G +A+++HG+ Q +R+Q L F R+LVA Sbjct: 245 NNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVA 304 Query: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357 TD+AARGLDI+ L V+N+ L PE ++HRIGRT RAG G AI+FC EE I Sbjct: 305 TDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQ 364 Query: 358 DMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 + L + T+ A +P A G A Sbjct: 365 KRIGKTLPEVKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQGAHRA 420 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 138/395 (34%), Positives = 200/395 (50%), Gaps = 5/395 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F L L L ++ LGY TPVQ A+PA+LAG+DV AKTG+GKTAAF L Sbjct: 3 KTFHDLG-LSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPT 61 Query: 62 LQQIDASL--FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + ++ + L++ PTRELA Q+ R +A+ ++ + GG + Q DSL Sbjct: 62 MDRLGHARHGQGPLLLIVTPTRELALQIESVCRTIAK-RSGHRVTCVVGGVSYNPQIDSL 120 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ATPGRL+D + + L+ + TLV+DEADRMLDMGF + ++ P RQ Sbjct: 121 RRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQ 180 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT AI + +P+ +EI + IEQ + K LL LL+ Sbjct: 181 TLLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLNE 240 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + +VF T+ L + G + +H D Q R + + G +LVAT Sbjct: 241 RGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVAT 300 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DV ARG+DI ++ VVN ++ E +VHRIGRT RAG +G AISF PE I Sbjct: 301 DVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQK 360 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKA 393 ++ + + + S A+ A A + Sbjct: 361 LIGKDIPEMSVESFDSSASDNALAAKATRANAQND 395 >UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9SM44_RICCO Length = 650 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 142/393 (36%), Positives = 204/393 (51%), Gaps = 27/393 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + F+ ++ L A N+ Y+ TPVQ A+P L G+D+ A+TGSGKTAAF Sbjct: 187 VNTFAEID-LGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFP 245 Query: 61 LLQQIDASLFQ-------------TQALVLCPTRELADQVAGELRRLARFLPNTKILTLC 107 ++ I Q AL+L PTREL+ Q+ E R+ + + K++ Sbjct: 246 IISGIMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFS-YQTGVKVVVAY 304 Query: 108 GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI 167 GG P Q L+ I+VATPGRL+D L++ VSL + L +DEADRMLDMGF I Sbjct: 305 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQI 364 Query: 168 DDVIRFA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYE 222 ++ P +RQT+LFSAT+P+ I ++ + + + + + I Q+ Sbjct: 365 RKIVEQNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEF 424 Query: 223 TSSKGKIPLLQRLLSLHQPS-------SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDL 275 K L LL + + +VF TKK ++ L G A S+HGD Sbjct: 425 VQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDR 484 Query: 276 EQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARA 335 Q++R+Q L F +G+ +LVATDVAARGLDI + VVNF+L D + +VHRIGRT RA Sbjct: 485 SQQEREQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 544 Query: 336 GNSGLAISFCAPEEAQRANIISDMLQIKLNWQT 368 G SGLA +F A A ++D++Q Sbjct: 545 GKSGLATAFFNEGNASLAMALADLMQESNQEVP 577 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 136/441 (30%), Positives = 205/441 (46%), Gaps = 9/441 (2%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F+ L L + E+GYL TP+QA A+P +L G+DV A+TG+GKTA+F L ++ Sbjct: 225 FADLG-LSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMD 283 Query: 64 QIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 + ++L+L PTRELA QVA + ++L L GG+ QRD L Sbjct: 284 ILSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLK-LNHALLIGGESMNDQRDVLS 342 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 +++ATPGRL+D +G + L LV+DEADRMLDMGF ++ ++ P +RQT Sbjct: 343 KGVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQT 402 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEID-STDALPPIEQQFYETSSKGKIPLLQRLLSLH 239 L FSAT I ++ ++P I + I K L+ LL Sbjct: 403 LFFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLRQE 462 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + + ++FCN K+D + +L + G +A LHGDL Q R TL +F GS ++LV +D Sbjct: 463 KVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSD 522 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 VAARG+DI L V NF++ E +VHRIGRT RAG G A + +P++ + I + Sbjct: 523 VAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEKL 582 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + + E + + G+ D + Sbjct: 583 INAPIPRIEIEGLERAEWSEEPNRGRGRRHKNGKGGKGNNRYGSRGQDNARKDRAFTEAD 642 Query: 420 VHPAHVYVAVRQAVAHKAWKQ 440 + + Sbjct: 643 AK---SQADITPDPVAEVATT 660 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 147/366 (40%), Positives = 217/366 (59%), Gaps = 9/366 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F TL L P L L++L + + TP+Q +P I+ G+DV A+TGSGKT F L L Sbjct: 2 SFETLG-LNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60 Query: 63 QQ---IDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 + + + Q LVL PTRELA Q+ R ++L + + + L GG Q D L Sbjct: 61 HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRS-RTVLLVGGTDMRRQIDFL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + +++ATPGRL+DH+Q+GT++L ++T+V+DEADRMLDMGF ++ +++ RQ Sbjct: 120 RRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQ 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSK-GKIPLLQRLLS 237 TLLF+AT P I ++ Q+DP+ I +++ A P I+Q+ S K LL+ +L+ Sbjct: 180 TLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILT 239 Query: 238 LHQ--PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 Q ++F TK+ + + + L G + +LHGD Q R++ L +F G R+L Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLDI ++ V+N++L PE +VHRIGRT RAG SG AISFC P + Sbjct: 300 VATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRD 359 Query: 356 ISDMLQ 361 I +L Sbjct: 360 IERLLG 365 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 151/415 (36%), Positives = 222/415 (53%), Gaps = 15/415 (3%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 T F L L L L L Y T TP+QAA +P +L KD+ A+TG+GKTAAF L L Sbjct: 4 TTFRELG-LSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPL 62 Query: 62 LQQIDASLFQT-----QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 +QQ+ + +AL+L PTRELA Q+ +R AR L + + GG + Q Sbjct: 63 IQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGL-HLSTAVIFGGVGYASQF 121 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L I+VATPGRL+DHL++ TVSLD + TL++DEAD MLDMGF+ A+ ++ P Sbjct: 122 KELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPR 181 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYET-SSKGKIPLLQR 234 R T +FSAT P+ I ++ + + P + + + +EQ S K L Sbjct: 182 KRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLE 241 Query: 235 LLSLHQ-PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 LL + P ++F T+ + L+ A ++HGD Q R++ L F +G Sbjct: 242 LLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTP 301 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATD+AARG+D+K + LV+N++L +PEV+VHRIGRTARAG +G AI+ C+PEE ++A Sbjct: 302 VLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKA 361 Query: 354 NIISDMLQIKLNWQ-----TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA 403 + +L L P ++ + ++ + + P G Sbjct: 362 RNVHKLLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPRKGYGR 416 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 142/456 (31%), Positives = 235/456 (51%), Gaps = 20/456 (4%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGLGLL 62 F LN+ + + L+E G+ T +Q A+P +L + DV QA+TG+GKT AFG+ ++ Sbjct: 3 FRDLNI-SESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPII 61 Query: 63 QQID--------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114 Q+I + +A++L PTRELA QV E+ + + ++ T+ GGQ Sbjct: 62 QKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNK-LRLCTVYGGQSIEK 120 Query: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174 Q + L++ I++ TPGR++DHL + T+ L+ ++ LV+DEAD ML++GF D +++++ Sbjct: 121 QINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKC 180 Query: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQ 233 + LLFSAT P++I + + I + S EQ +YE K LL+ Sbjct: 181 KEDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLR 240 Query: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 R++ +VFC TK D + LN+ S+ +LHGD+ Q+ R+ L RF + Sbjct: 241 RIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKID 300 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 +++ATDVAARG+DI L V+N+++ +PE +VHRIGRT RAGN G AI+F P E +R Sbjct: 301 IMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRF 360 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGA 413 I + + + P + I L + + + L+ Sbjct: 361 KYIMKISKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSEDS--------EDLENY 412 Query: 414 DIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGK 449 + + + + +A + + K QL ++ K Sbjct: 413 EFENLEIVDELIELADSKVIIDKLISQLFKEELNRK 448 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 145/399 (36%), Positives = 202/399 (50%), Gaps = 20/399 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 M F L + P L L + GY T TP+QA ++P IL G DV A+TG+GKTAAF L Sbjct: 1 MNKFEDLGLTGP-LLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALP 59 Query: 61 LLQQI---DASLFQT-------------QALVLCPTRELADQVAGELRRLARFLPNTKIL 104 +LQ + D + + LVL PTREL+ Q+ R + + Sbjct: 60 ILQIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKT-RLRST 118 Query: 105 TLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFS 164 + GG Q LQ +VATPGRLLD + +G + L + LV+DEAD MLDMGF Sbjct: 119 VIFGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFL 178 Query: 165 DAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYET 223 + +++F P RQ LLFSAT P I ++ + DP+ I+I + IEQ Sbjct: 179 PDVKRILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFV 238 Query: 224 SSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQT 283 + K LL + S +VF TK AV L + G A ++HG+ Q +R +T Sbjct: 239 AQADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRT 298 Query: 284 LVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAIS 343 L +F N VLVATDVAARG+DI ++ V+N++ PE +VHRIGRT RAG G + Sbjct: 299 LNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 358 Query: 344 FCAPEEAQRANIISDMLQIKLNWQT-PPANSSIATLEAE 381 FC E + I +++++ T P + E Sbjct: 359 FCGGHETKFFIAIEREIKLQIPVATGLPGCQPRPLQDPE 397 >UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE68 Length = 755 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 179/398 (44%), Gaps = 28/398 (7%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 F N P + + + G+L T +QA P L+G+D+ A+TGSGKT A+ L Sbjct: 143 QTFEESN-FPANVMAVIKKQGFLKPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYALPA 201 Query: 62 LQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 I ALVL PTRELA Q+ + + + GG P G Q Sbjct: 202 TVHITNQKPLSKGDGPIALVLAPTRELAQQIQSVAKDFGASCS-IRNTCIFGGAPKGSQA 260 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ I++ATPGRL+D L KGT +L LV+DEADRMLDMGF I +I Sbjct: 261 RDLERGVEIVIATPGRLIDFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 320 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYETSSKGKIPLLQR 234 RQ L++SATWP+ + ++ D + I I S A I Q K L Sbjct: 321 DRQVLMWSATWPKEVQTLAEDFLHDYIQINIGSLSLAANHNIRQHVEVMQDSEKEGRLTN 380 Query: 235 LLSLHQPSS---CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGS 291 LL ++F TKK + + + G A+ +HGD Q++RD L F +G Sbjct: 381 LLRDIGGDRNNKILIFVETKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNEFRSGK 440 Query: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351 VLVATDVAARG + +VHRIGRT R+ G A +F P+ A+ Sbjct: 441 CAVLVATDVAARG----KIRH------------YVHRIGRTGRSSQMGTAFTFFTPQNAR 484 Query: 352 RANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDG 389 +A + +L+ P +A + Sbjct: 485 QAKGLVAVLEEASQPINPKVTELLAATTKGPTPEPTNN 522 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 149/429 (34%), Positives = 216/429 (50%), Gaps = 29/429 (6%) Query: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65 L L + GY +TP+Q A+P I G D+ A+TG+GKTAAF L +L I Sbjct: 8 LSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKAN 67 Query: 66 ------------------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLC 107 AS +AL+L PTRELA+QVA +++ +++LP K + Sbjct: 68 HAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLP-IKSGVVY 126 Query: 108 GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI 167 GG Q L+ ++VATPGRLL+HL V L + LV+DEADRMLDMGF I Sbjct: 127 GGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDI 186 Query: 168 DDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSK 226 + ++ QTL+FSAT+ + + +++ ++ + P I + + I+Q Y + + Sbjct: 187 EKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEE 246 Query: 227 GKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR 286 K LL L+ ++ +VF TK+ + L G A HGD Q R++ L + Sbjct: 247 RKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQ 306 Query: 287 FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA 346 F+ G RVLVATDVAARGLDI L VVNF L + PE +VHR+GRT RAG SG AIS + Sbjct: 307 FSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVS 366 Query: 347 PEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTG 406 P++ + I +++ K P +E + K + R A Sbjct: 367 PKDERFLENIEQLIERKFERIVAPGYEFNRLEASEYQEATVKRDSKNRYR-----AAQEK 421 Query: 407 DIGLDGADI 415 + L D+ Sbjct: 422 NQNLAKKDV 430 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 160/420 (38%), Positives = 225/420 (53%), Gaps = 10/420 (2%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F + + P L + E GY MTPVQ A+PAI G+DV A+TG+GKTAAF L +L Sbjct: 2 KFESFS-FAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60 Query: 63 QQIDASLFQTQ-----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 Q++ Q AL+L PTRELA QVA + ++ + N +LT+ GG Q Sbjct: 61 QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHM-NISVLTIYGGMKMATQAQ 119 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 L+ IIVATPGRLL+H+ +SL + LV+DEADRMLDMGFS I +++ Sbjct: 120 KLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKK 179 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLL 236 RQ LLFSAT+ A+ ++ + P I D + + Q Y + K LL L+ Sbjct: 180 RQNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELI 239 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VF T+ D + LN G + +HG+ Q R + L F G RVLV Sbjct: 240 GTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLV 299 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 AT+VAARGLDI+ LE VVN++L + E +VHRIGRT RAG +G+AISF + EE + I Sbjct: 300 ATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA-LTGDIGLDGADI 415 ++ K+ T P +++ E + T+ K D +GA + G+ + G + Sbjct: 360 EKLIGQKIRRITVPGYE-VSSRELLLKTIEKRRSFGKKQERNDNVGAQVVGEKNMQGRRV 418 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 153/457 (33%), Positives = 228/457 (49%), Gaps = 10/457 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F+ L L + L LGY TP+Q A+P ++ G D+ +A TG+GKTAAF L + Sbjct: 21 SGFAKLG-LDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPI 79 Query: 62 LQQIDAS--LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L + S + +L+L PTRELA QVA + + + L ++L + GG P Q +L Sbjct: 80 LHGLARSTARTKPTSLILVPTRELAMQVAESVAKYGQPL-GVRVLPIYGGAPMDQQIRAL 138 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 ++VATPGR LDH+++ T+ LDA+ +V+DEAD MLDMGF++ I+ ++ P RQ Sbjct: 139 DRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQ 198 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEID----STDALPPIEQQFYETSSKGKIPLLQRL 235 T LFSAT I AI+ + ++ I + LP + Q Y + K+ L R+ Sbjct: 199 TALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRV 258 Query: 236 LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVL 295 L P++ ++FC T+ + + +AL G +LHG + Q RD+ + F G A +L Sbjct: 259 LDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLL 318 Query: 296 VATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355 VATDVAARGLD++ L VVNF L E +VHRIGR RAG G+AI+ P E Sbjct: 319 VATDVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRA 378 Query: 356 ISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADI 415 I ++ + P +++ E + I A + LD D+ Sbjct: 379 IERHTGQRIEYGQVPTAATLREKRLERTKVAIRETVAAGELEAFRAMFGSLVGELDPTDV 438 Query: 416 GKIAVHPAHVY--VAVRQAVAHKAWKQLQGGKIKGKT 450 A+ AH + Q G G+ Sbjct: 439 ALAALKLAHRARGGDIDDGPDIPVATVPQRGDRNGRD 475 Score = 62.6 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%) Query: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439 +A + I G++A + P D++GA+ + GL G +I I + V V + A + Sbjct: 493 PRLARIFISAGREAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDVPEDAAEHVIE 552 Query: 440 QLQGGKIKGKTCRVRLLK 457 L G +++G+ R + Sbjct: 553 SLNGVRLRGRRVSARRDR 570 >UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R9Z2_9FIRM Length = 472 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 169/474 (35%), Positives = 243/474 (51%), Gaps = 24/474 (5%) Query: 4 FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 F L + L+ LGY VQ A +P +LA +DV VQAKTGSGKTA+F + +LQ Sbjct: 3 FKDFG-LEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQ 61 Query: 64 QIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123 Q+ + Q+L+L PTRELA Q+ E ++ K L + G PF Q+ LQ Sbjct: 62 QLIWNEKLPQSLILAPTRELAMQIQTEFDQIGA-KKRIKSLAIYGKFPFRFQKQDLQQRT 120 Query: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183 H+I ATPGR+LDHL++ T ++ +V+DEAD MLDMGF D ++ V+ + P R T LF Sbjct: 121 HVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTALF 180 Query: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPLLQRLLSLHQPS 242 SAT P+ I ++ R DPL+I +++ + IE Y+ + + K L LL Sbjct: 181 SATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLLGKETVE 240 Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 S ++F T++ + + L LHG L Q +R L F +G R+LVA+DVAA Sbjct: 241 SAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVAA 300 Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 RG+DI + V+N + E ++HR+GRTAR SG AISF + ++ + D L Sbjct: 301 RGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEKLMQLEDYLGY 360 Query: 363 KLNWQTPPA-------------------NSSIATLEAEMATLCIDGGKKAKMRPGDVLGA 403 L+ + A L ++ + I GK K+R GD+ GA Sbjct: 361 SLSMRDASTELLTQDYDLSYLSQSSERKEDKGAALRKDVLRIYIGAGKAKKLRAGDIAGA 420 Query: 404 LTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 L G+ D+G I V H YV + A K L+ +IKGK RV + K Sbjct: 421 LCQLEGICFDDVGVIQVQEHHSYVDILHGKGEVALKSLK--RIKGKEVRVEIAK 472 >UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA Length = 726 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 141/392 (35%), Positives = 201/392 (51%), Gaps = 21/392 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F L L P N++ Y TPVQ A+P I+ +D+ A+TGSGKTAAF + Sbjct: 210 VTSFLELK-LHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIP 268 Query: 61 LLQQIDASLFQ------------TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCG 108 LL + AL+L PTRELA Q+ E R+ + + + + G Sbjct: 269 LLSMMYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFS-YRSLVRPCVVYG 327 Query: 109 GQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAID 168 G+ Q + +++VATPGRL D L++ + LD + LV+DEADRMLDMGF I Sbjct: 328 GRDIRGQLQDISQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIR 387 Query: 169 DVIRFA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYET 223 ++ P RQTL+FSAT+P I ++ +D L + + + I Q+ Sbjct: 388 KIVEQTNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYV 447 Query: 224 SSKGKIPLLQRLLSLHQPSS-CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQ 282 K L +L+ S +VF TK+ A+ L+ G S+HGD Q DR+ Sbjct: 448 DENEKRDHLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDREL 507 Query: 283 TLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAI 342 L F GS +LVAT VAARGLDI +++ V+N++L D E +VHRIGRT R GN G AI Sbjct: 508 ALQSFREGSTPILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAI 567 Query: 343 SFCAPEEAQRANIISDMLQIKLNWQTPPANSS 374 SF + A + D+L ++ N P Sbjct: 568 SFYTDKNNNVAKELVDIL-LEANQIVPDWLRD 598 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 132/433 (30%), Positives = 228/433 (52%), Gaps = 7/433 (1%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGLG 60 F N L L +G+ T +Q +P +L+ +DV A+TG+GKTAAFGL Sbjct: 3 KTFKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLP 62 Query: 61 LLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120 ++Q+++ L QA +LCPTREL Q+ + R ++FL KI++L GG Q SLQ Sbjct: 63 IIQKVNFDLSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKSLQ 122 Query: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180 + HII+ TPGR++D +++ + L+ + L++DEAD ML+MGF + +D +++ P +RQ+ Sbjct: 123 NKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQS 182 Query: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSS-KGKIPLLQRLLSL 238 LLFSAT + + AI+ DP+ I + + ++ +Y K L+R++ + Sbjct: 183 LLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIVDI 242 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC TKK+ + + + L + G +A +L+GDL Q R+ + RF N + + LVAT Sbjct: 243 NPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVAT 302 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ ++ V+N+ L + ++++HR GRT RAGNSG+++ +E + Sbjct: 303 DVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKEFEK 362 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 + P I + + + ++ +I + K Sbjct: 363 RIGKSFERVMVPNGKEICEKQLLYFIEKVKKVVVDEK----LMNQFLPEIQKNLEFFDKE 418 Query: 419 AVHPAHVYVAVRQ 431 + ++ + Sbjct: 419 ELIKRFSWIEFNR 431 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 138/389 (35%), Positives = 217/389 (55%), Gaps = 3/389 (0%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 +F++ P + + +L Y T +Q A+P I+ GKD+ QA+TG+GKTAAF L + Sbjct: 3 KSFASFG-FRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPI 61 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +D QAL+L PTREL+ Q+A E+ +L + L N +L+L GG Q L+ Sbjct: 62 LNALDEGKRDIQALILTPTRELSIQIAKEVEKLGKHL-NVNVLSLHGGTDIDKQLSKLKE 120 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 I+V TPGR+LDH+++G++ ++TLV+DEAD+M++MGF + ++ VI P+ RQ L Sbjct: 121 TVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVL 180 Query: 182 LFSATWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 LFSAT P+ + ++ R + P I+I + IEQ +Y + K L +L Q Sbjct: 181 LFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQEQ 240 Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 P +VF NT+ Q + L E G SA +L+GDL Q R+Q + +F + L+ATD+ Sbjct: 241 PFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDI 300 Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360 AARGLD++ + V+N++L D + ++HR+GRT RAG G AIS +P + + Sbjct: 301 AARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFAKAT 360 Query: 361 QIKLNWQTPPANSSIATLEAEMATLCIDG 389 + + + + + A Sbjct: 361 KASIEERILQEGRHLDAGRRQRAEEREAH 389 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 150/454 (33%), Positives = 235/454 (51%), Gaps = 12/454 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 + F L L L L+ +GY T +P+Q + +L KD+ QA+TG+GKTAAF L L Sbjct: 12 SKFERLG-LSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPL 70 Query: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 L +I+ ++ Q L+L PTRELA QV+ ++ AR + +L + GGQ + +Q L+ Sbjct: 71 LDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKR 130 Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 H IV TPGR++DH++K T+ LD L + V+DEAD ML MGF D I +++ P RQ Sbjct: 131 GVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIA 190 Query: 182 LFSATWPEAIAAISGRVQRDPLAI-EIDSTDALPPIEQQFYETSS-KGKIPLLQRLLSLH 239 LFSAT P I I+ + P I T+ I Q++ K+ L R+L + Sbjct: 191 LFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRILEVT 250 Query: 240 QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATD 299 + ++F TK + + L+ G SA +++GD++Q R++ + + G +L+ATD Sbjct: 251 VFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILIATD 310 Query: 300 VAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359 +AARGLD++ + VVN+++ D E +VHRIGRT RAG G AI F + E + N I + Sbjct: 311 IAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTIEHV 370 Query: 360 LQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419 + K+ P+ I E I + ++ L G+ + I Sbjct: 371 TRQKITPIELPSVKIINAKRIETFKQNIIQTINNQNL--EIFKKLVGEFQQENPKIEISQ 428 Query: 420 VHPAHVYVA-------VRQAVAHKAWKQLQGGKI 446 + A Y+A + + ++ + Q KI Sbjct: 429 ISSALAYIAQGNEPLLLSEKESNLGFNQTPKEKI 462 Score = 48.3 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 6/97 (6%) Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIG 416 ++ I + + I I+ G ++ ++LGA+ +D IG Sbjct: 460 EKII-ISIRAKPLKGFPKIPMCR-----YKIEVGNNNNVKTSNILGAIANKTNMDSEYIG 513 Query: 417 KIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRV 453 I + + + ++++ + LQ + GK + Sbjct: 514 SIQIFDHFSTIDLPAKISNEVFGVLQKTIVCGKHLNI 550 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 152/455 (33%), Positives = 238/455 (52%), Gaps = 11/455 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGK-DVRVQAKTGSGKTAAFGL 59 M F+ + + L+ LG+ MTPVQ +P +L + D+ A+TG+GKTAAFG+ Sbjct: 1 MKTFAEF-EINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGI 59 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L+Q D L +TQALVLCPTREL QVAG+L + R++ KI+ + GG Q + L Sbjct: 60 PLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEEL 119 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQ 179 + ++VATPGRL D +++G V L ++ +V+DEAD ML MGF D ++ ++ P S+ Sbjct: 120 RKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKN 179 Query: 180 TLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLLSL 238 TLLFSAT P +AAI+ +DPL I + +A ++ +Y S++ + L+R+ + Sbjct: 180 TLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADM 239 Query: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 + ++FC T+ + + + D L E G SA +LHGDL Q RD + +F + + R+LVAT Sbjct: 240 NPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVAT 299 Query: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 DVAARGLD+ L V+N+ L + + HR GRT RAG G++I+ E + I Sbjct: 300 DVAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIER 359 Query: 359 MLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKI 418 L+ P+ I ++ KK ++ + L + + Sbjct: 360 CLKKNFEEGRIPSGHEICKRR---LLSHMEAVKKTEIDAEHIDPFLPAISK-TLESLDRE 415 Query: 419 AVHPAHVYVAVRQAVA----HKAWKQLQGGKIKGK 449 + V + + +A + K K Sbjct: 416 ELIKRFVSMEFNRFLASYRNAPDLNTFEKTPPKKK 450 Score = 51.0 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 38/114 (33%) Query: 344 FCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGA 403 + A N K + + L I+ GKK + P ++ Sbjct: 430 LASYRNAPDLNTFEKTPPKKKTREAAAGKPYRLASRKKFTPLFINAGKKDGISPKRLMRD 489 Query: 404 LTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457 L+ G+ IG+I V+ + A K + L+ I G+ V + + Sbjct: 490 LSDAAGMPDVRIGRIEVNNTTSLLEADSRFAPKILQALKSLTINGRYVAVEIDR 543 >UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2V713_NAEGR Length = 629 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 204/391 (52%), Gaps = 25/391 (6%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + AF N LPP + N+ G+ TPVQ ++P +LAG+D+ A+TGSGKT AF Sbjct: 151 IAAFKEAN-LPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFP 209 Query: 61 LLQQIDASLFQ----------------TQALVLCPTRELADQVAGELRRLARFLPNTKIL 104 ++ + L++ PTREL+ Q+ E R+ + + Sbjct: 210 IISNLMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGR-RTV 268 Query: 105 TLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFS 164 GG Q L+ I+VATPGRL+D + +G++SL + LV+DEADRMLDMGF Sbjct: 269 VAYGGAAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFE 328 Query: 165 DAIDDVIRFA----PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQ 219 I ++ P R TL+FSAT+P+ I ++ + L + + I Q+ Sbjct: 329 PQIRYIVEKTGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQK 388 Query: 220 FYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRD 279 F K L+ ++ + + +VF TKK+ + L + G + S+HGD QR+ Sbjct: 389 FVYCKDDEKRDLMLEAIASVE-TLTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRE 447 Query: 280 RDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSG 339 R+ L F G +LVATDVA+RGLDI + V+N++L + E +VHRIGRT RAGN+G Sbjct: 448 RETALENFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTG 507 Query: 340 LAISFCAPEEAQRANIISDMLQIKLNWQTPP 370 ++ SF + Q A+ + +L+ + + PP Sbjct: 508 ISTSFFTDKNNQIADDLITVLE-EAKQEVPP 537 >UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME Length = 703 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 122/394 (30%), Positives = 193/394 (48%), Gaps = 13/394 (3%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 F P L + ++G+ +P+Q+ A P +L G D+ A+TG+GKT AF L + Sbjct: 283 TFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGM 342 Query: 63 QQIDAS--LFQTQ----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 + T+ LVL PTRELA Q+ E+++ + K + + GG MQ Sbjct: 343 IHTEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYS--FRGMKAVCVYGGGNRNMQI 400 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 L+ II+ TPGRL D + + + + LV+DEADRMLDMGF I V+ Sbjct: 401 SDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRP 460 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD--ALPPIEQQFYET-SSKGKIPLLQ 233 RQT++ SATWP + ++ ++P+ + + S D A ++Q K + Sbjct: 461 DRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTIT 520 Query: 234 RLLSLHQ-PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 + ++FC K + L G +HG+ +Q DR+Q + +G Sbjct: 521 SFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVV 580 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 R+LVATDVA+RGLDI+ + V+N++ + E +VHR+GRT RAG G +ISF E+ Sbjct: 581 RILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAM 640 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLC 386 A + ++L + + P ++A M Sbjct: 641 AKELIEIL-QEAEQEVPDELHNMARRFKAMKDKR 673 >UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax=Eukaryota RepID=DDX3_DICDI Length = 712 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 137/395 (34%), Positives = 199/395 (50%), Gaps = 23/395 (5%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ ++ L L N+ Y TPVQ +ALP IL +D+ A+TGSGKTAAF Sbjct: 246 LNSFADVD-LGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFP 304 Query: 61 LLQQID---------------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILT 105 ++ I +ALVL PTRELA Q+ E + + P + Sbjct: 305 IISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSP-VSSVV 363 Query: 106 LCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSD 165 + GG Q + L I+VAT GRL+D L +G VSL + LV+DEADRMLDMGF Sbjct: 364 IYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEP 423 Query: 166 AIDDVIRF--AP--ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFY 221 I +I P RQTL+FSAT+P+ I ++ + + +++ I Q+ Sbjct: 424 QIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIE 483 Query: 222 ETSSKGKIPLLQRLLSLHQ-PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDR 280 + K L LS + C++F TK+ C + LN+ +HGDL Q +R Sbjct: 484 YVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPER 543 Query: 281 DQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGL 340 + L F + + LVATD+A+RGL I ++ LV+NF+L D ++VHRIGRT RAG GL Sbjct: 544 ENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGL 603 Query: 341 AISFCAPEEAQRANIISDMLQIKLNWQTPPANSSI 375 AISF + + +++ N P + Sbjct: 604 AISFFNEKNKPVGAELLKLMKAS-NQDIPDWFEKM 637 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 136/375 (36%), Positives = 199/375 (53%), Gaps = 16/375 (4%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 + +F+ + L + + ++ Y T +QA A+P L+G+D+ A+TGSGKTAAF + Sbjct: 122 IESFTDMG-LHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIP 180 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 ++Q A ALVL PTRELA Q+ E++ +R L + + + GG Q Sbjct: 181 MIQHCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQ 240 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 R L+ +I+VATPGR + HLQ+G SL ++ +V+DEADRMLDMGF I +V++ P Sbjct: 241 RSELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLP 300 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQR 234 QTLLFSAT P I ++ +P+ +++ + Q + S KI L Sbjct: 301 QKHQTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLA 360 Query: 235 LLSLH---------QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLV 285 LL +VF K C V +AL G A++LHG Q +R+ L Sbjct: 361 LLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALR 420 Query: 286 RFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345 F NG+ +LVATDVA+RGLD+ + V+N +L E +VHRIGRT RAG++G A SF Sbjct: 421 DFRNGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFY 480 Query: 346 APEEAQRANIISDML 360 + I + Sbjct: 481 TDRDVFLVAHIRKAI 495 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 155/403 (38%), Positives = 213/403 (52%), Gaps = 6/403 (1%) Query: 1 MT-AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL 59 MT FS+L L P+ L ELG+ TP+Q A+P L G+DV A TGSGKT AF L Sbjct: 1 MTMTFSSL-QLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLL 59 Query: 60 GLLQQIDASLFQ-TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118 +L Q+ + T+ALVL PTRELA Q+ L+ + P + GG G Q + Sbjct: 60 PILHQLMSKPRGNTRALVLTPTRELAAQILESLQDVTTHTP-LTGAAVFGGVGMGPQEHA 118 Query: 119 LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP-AS 177 + +IVATPGRLLDH ++ LD L LV+DEADRMLDMGF I ++R P Sbjct: 119 FRSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRK 178 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDA-LPPIEQQFYETSSKGKIPLLQRLL 236 RQTL FSAT P IAA++ + P+ + + A I Q Y S + K LL LL Sbjct: 179 RQTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALL 238 Query: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296 +VF TK + L G A +HG+ Q R Q L F +GS +VLV Sbjct: 239 KRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLV 298 Query: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356 ATD+AARG+D+++L VVNF++ E ++HR+GRTARA +G A +F +PEE +I Sbjct: 299 ATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLI 358 Query: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGD 399 ++ L T P A ++ + + + + + Sbjct: 359 ERAIKRALPRVTVPDFDYHAKPTQKLEVPIAERIAEIRKKKAE 401 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 134/405 (33%), Positives = 205/405 (50%), Gaps = 11/405 (2%) Query: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 ++F+ + + + Y TP+Q +P L+G+D+ AKTGSGKTAAF + Sbjct: 253 SSFAHFG-FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPM 311 Query: 62 LQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116 L I A+++CPTREL Q+ E +R + N + + + GG Q Sbjct: 312 LIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAY-NLRSVAVYGGGSMWEQA 370 Query: 117 DSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPA 176 +LQ I+V TPGRL+DH++K +L ++ LV DEADRM DMGF + + Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 SRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSK-GKIPLLQR 234 RQTLLFSAT+ + I ++ + DP+ + +A + Q S K L R Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 235 -LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293 L+ S ++F K + + + + L + G + LHGD++Q +R++ + F Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIP 550 Query: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353 VLVATDVAARGLDI S++ V+N+++A D + H HRIGRT RAG G+A + P+++ A Sbjct: 551 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA 610 Query: 354 NIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 + L+ N +A A GGK K+ G Sbjct: 611 GDLVRNLE-GANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIG 654 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 530 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 150/411 (36%), Positives = 224/411 (54%), Gaps = 15/411 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 MT F+ L+ L P + E GY + TP+QA A+P LAG+DV A+TG+GKTA+F L Sbjct: 10 MTTFADLD-LNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLP 68 Query: 61 LLQQIDASL---FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117 ++ + ++LVLCPTRELA QVA A+ + TK L + GG F Q Sbjct: 69 MITMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLI-GGVSFKEQEQ 127 Query: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177 ++ +++ATPGRLLDH ++G + L+ + +V+DEADRMLDMGF I+ + P + Sbjct: 128 AIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFT 187 Query: 178 RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALP-PIEQQFYE-------TSSKGKI 229 RQTL FSAT I I+ +P IE++ IEQ+ E +K K Sbjct: 188 RQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKR 247 Query: 230 PLLQRLLSLHQP--SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRF 287 +L+ ++ + ++FCN K D V +L + +A +HGDL+Q R +TL F Sbjct: 248 DMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGF 307 Query: 288 ANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAP 347 +GS +LVA+DVAARGLDI ++ V+N+++ E +VHRIGRT RAG +G+AI+ C P Sbjct: 308 RDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVP 367 Query: 348 EEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPG 398 + + I +++ + P ++ E E G + P Sbjct: 368 SDEKYLGAIEGLIKQPIPRAEAPMDAGTPKAETEDKPRRSRRGGRRSEEPK 418 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 530 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 150/451 (33%), Positives = 232/451 (51%), Gaps = 15/451 (3%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG-KDVRVQAKTGSGKTAAFGL 59 + F + L + + ++G+ T TP+Q ALP +LAG D A TG+GKTAAFG+ Sbjct: 43 VDNFESFG-LSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGI 101 Query: 60 GLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119 L++ ID+++ TQALVL PTRELA QVA +L L + +++T+ GG + Q D + Sbjct: 102 PLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGK-KKGVRVVTIYGGASYRTQIDGI 160 Query: 120 QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS-- 177 + HI+VATPGRL+D L++ + L ++ T+V+DEAD ML MGF +A++ ++ Sbjct: 161 KRGAHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDS 220 Query: 178 ------RQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIP 230 +T LFSAT + ++ +P + ++ IEQ +Y + K Sbjct: 221 DSVRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTE 280 Query: 231 LLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290 ++ RLL ++FC TK + + D L + G A SLHGD Q++R+ TL +F Sbjct: 281 VIGRLLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQR 340 Query: 291 SARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA 350 +V+VATDVAARGLDIK L VVN L WD E +VHRIGRT R G G AI+ PE+ Sbjct: 341 QVKVIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQL 400 Query: 351 QRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMR---PGDVLGALTGD 407 + + L P+ +A L+ + + ++ D++ L Sbjct: 401 TLLRRVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLIQDLIQA 460 Query: 408 IGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438 ++ ++ K + + K Sbjct: 461 EDINFKELSKEELLARFIAAYFPNVFVKKDL 491 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 530 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 134/402 (33%), Positives = 201/402 (50%), Gaps = 11/402 (2%) Query: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60 +T+F L + + Y TP+QA A+P L+G+D+ AKTGSGKTAAF Sbjct: 264 VTSFGHFG-FDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWP 322 Query: 61 LLQQIDASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQ 115 LL + L+L PTREL+ Q+ E ++ + + N ++ GG Q Sbjct: 323 LLMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGK-VYNLNVVCCYGGGSKWEQ 381 Query: 116 RDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175 +L+ I+VATPGR++D ++ +L + LV+DEADRM MGF + + Sbjct: 382 SKALEQGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVR 441 Query: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFY-ETSSKGKIP-LL 232 RQTLLFSAT+ + I ++ V DP+ I +A I Q + + K LL Sbjct: 442 PDRQTLLFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLL 501 Query: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSA 292 L+ S ++F K D + V + L + L LHGD++Q DR++ + +F Sbjct: 502 CHLVKFLSEGSVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKEC 561 Query: 293 RVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352 +LVATDVAARGLDI + VVN+++A D + H HRIGRT RAG G A + ++ + Sbjct: 562 DILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEF 621 Query: 353 ANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394 A + L+ + Q P +A + + GK K Sbjct: 622 AGHLVRNLE-GADQQVPEDLMELAMKSSWFRSSRFKQGKGRK 662 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 136/373 (36%), Positives = 215/373 (57%), Gaps = 4/373 (1%) Query: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62 +F+ L L + L ++ E G+ + +P+Q A+PA+L G+DV QA+TG+GKTAAF L ++ Sbjct: 23 SFNDLG-LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPII 81 Query: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 + + +ALV+ PTRELA Q++ E+ +L + TK + + GGQ Q + ++ Sbjct: 82 NNL-KNNHTIEALVITPTRELAMQISDEIFKLGKHTK-TKTVCVYGGQSVKKQCEFIKKN 139 Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 P +++ATPGRLLDHL+ + +V+DE+D MLDMGF D I+++ + P+ Q LL Sbjct: 140 PQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 199 Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241 FSAT PE I ++ ++ +P+ I I ++ I Q+FY + + + LL P Sbjct: 200 FSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAP 259 Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 +VF TKK+ + L + +LHGD++QRDR +++ F A VLVATDVA Sbjct: 260 EKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVA 319 Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361 +RGLDI + V N+ L + E ++HRIGRT RAG G+AI+ P E + + + Sbjct: 320 SRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEID 379 Query: 362 IKLNWQTPPANSS 374 ++ P + Sbjct: 380 SEIELFEIPTINE 392 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.199 0.737 Lambda K H 0.267 0.0610 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,887,224,375 Number of Sequences: 3077464 Number of extensions: 268885474 Number of successful extensions: 622702 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 8410 Number of HSP's successfully gapped in prelim test: 4035 Number of HSP's that attempted gapping in prelim test: 575244 Number of HSP's gapped (non-prelim): 22815 length of query: 457 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 325 effective length of database: 634,171,108 effective search space: 206105610100 effective search space used: 206105610100 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 96 (41.0 bits)