260 d1rifa_ Probab=97.27   E-value=0.0033  Score=42.86  Aligned_columns=103  Identities=14%

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCEEEEECCCCCHHHHHHHHHHH--------------
Q ss_conf             58999999976999759998798899899999999----972998999967325689999999999--------------
Q batch____        37 AGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA----RYANADVERISAVTSGVKEIREAIERA--------------   98 (447)
Q Consensus        37 ~~~~L~~~i~~~~~~slLL~GPPGtGKTtlA~iIA----~~l~~~~veinas~~~~~dir~ii~~a--------------   98 (447)
                      +...+..++.+.   +.|+.+|.|+|||.++-.++    ...+..++-+-++..-.....+.+...              
T Consensus       118 Q~~~i~~~l~~~---~~ii~~~tGsGKT~~~~~~i~~~~~~~~~~~lii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~  194 (282)
T d1rifa_         118 QKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGG  194 (282)
T ss_dssp             HHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTT
T ss_pred             HHHHHHHHHHCC---CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf             999999998479---85999368881379999999999742798099995528999999999998607577420000167


Q ss_pred             -----------------------HHHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             -----------------------85121058848998574678999999999998649956999933
Q batch____        99 -----------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATT  142 (447)
Q Consensus        99 -----------------------~~~~~~~~~~VLiIDEI~~l~k~~qd~LL~~lE~g~~~lI~aTT  142 (447)
                                             ..........++++||+|++........+..+.+....+-++.|
T Consensus       195 ~~~~~~~~~~~~iii~t~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~lglTaT  261 (282)
T d1rifa_         195 ASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGS  261 (282)
T ss_dssp             CSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECSS
T ss_pred             CCCHHCCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             5300011343578897399998878842312528998380027683389999822437859998530