181 c3b9qA_ Probab=97.61   E-value=0.0014  Score=45.49  Aligned_columns=85  Identities=22%

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHH----------------------HHHHHHH
Q ss_conf             6999759998798899899999999972---99899996732568999999----------------------9999851
Q batch____        47 AGHLHSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVKEIREA----------------------IERARQN  101 (447)
Q Consensus        47 ~~~~~slLL~GPPGtGKTtlA~iIA~~l---~~~~veinas~~~~~dir~i----------------------i~~a~~~  101 (447)
                      .+++..++|.||+|+||||++--+|..+   |..+.-+++-+.+..-+.++                      ..++-..
T Consensus        95 ~~~~~vi~~vG~~G~GKTTt~aklA~~~~~~g~~v~li~~Dt~R~gA~eQL~~~a~~~gv~~~~~~~~~~~~~~~~~~~~  174 (298)
T c3b9qA_          95 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEKAKAATVLSKAVKR  174 (298)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCCCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_conf             68976999972888765569999999999679917998568767468999999988739808972898879999999999


Q ss_pred             HHCCCCCEEEEECHHHC--CHHHHHHHHHHHH
Q ss_conf             21058848998574678--9999999999986
Q batch____       102 RNAGRRTILFVDEVHRF--NKSQQDAFLPHIE  131 (447)
Q Consensus       102 ~~~~~~~VLiIDEI~~l--~k~~qd~LL~~lE  131 (447)
                      .......+++||..-+.  +....+.|....+
T Consensus       175 ~~~~~~D~IlIDTaGr~~~~~~~~~el~~~~~  206 (298)
T c3b9qA_         175 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKK  206 (298)
T ss_dssp             HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             99679979998188888775799999999999