22 c1in8A_ Probab=99.97   E-value=3.5e-27  Score=216.53  Aligned_columns=258  Identities=23%

Q ss_pred             HCCCCHHHHCCHHHHHHHHH-HHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             15787666118399986589-99999976999-75999879889989999999997299899996732568999999999
Q batch____        20 MRPENLAQYIGQQHLLAAGK-PLPRAIEAGHL-HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIER   97 (447)
Q Consensus        20 ~RP~~lddivGq~~li~~~~-~L~~~i~~~~~-~slLL~GPPGtGKTtlA~iIA~~l~~~~veinas~~~~~dir~ii~~   97 (447)
                      +||++|+|||||++++.... ++......+.. +++||||||||||||+|++||++++.++++++++.............
T Consensus         3 ~rp~~~~d~iG~e~~~~~L~~~i~~~~~~~~~~~~ill~GppGtGKT~la~~ia~~l~~~~~~i~~~~~~~~~~~~~~~~   82 (298)
T c1in8A_           3 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT   82 (298)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred             CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             88999778127099999999999998633888885799869889888999999997099799994155332012456688


Q ss_pred             HHHHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCC----EEEEEECCCCHHHCCHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf             98512105884899857467899999999999864995----69999338721868914205332786089998999999
Q batch____        98 ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI----TFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQV  173 (447)
Q Consensus        98 a~~~~~~~~~~VLiIDEI~~l~k~~qd~LL~~lE~g~~----~lI~aTTenp~~~l~~aL~sR~~~i~l~~ls~eei~~i  173 (447)
                           ....+.++|+||++.++...|+.|+..++++..    .++...+.+........+.+++..+.+.+++.+++..+
T Consensus        83 -----~~~~~~il~~dei~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (298)
T c1in8A_          83 -----SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIQPFTLVGATVRSGLLSSPLRSRFGIILELDFYTVKELKEI  157 (298)
T ss_dssp             -----TCCTTCEEEEETGGGCCHHHHHHHHHHHHHSCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHH
T ss_pred             -----HHCCCCEEEEEEHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             -----513799899942367698999999999705533444066526545856314643323443113678989999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             99999999986076898559899999999659998999999999999604767784206999999985122201274556
Q batch____       174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGD  253 (447)
Q Consensus       174 l~~~l~~~~~~~~~~~i~i~deaL~~Ia~~s~GD~R~aLn~LE~a~~~a~~~~~~~~~It~e~i~~~l~~~~~~yDk~gd  253 (447)
                      ++..+...       ++.+++++++.|++.+.||+|.++++|+.+...+.....+.  |+.+++++++...........+
T Consensus       158 ~~~~~~~~-------~~~~~~~~~~~i~~~~~g~~R~~~~ll~~~~~~~~~~~~~~--i~~~~i~~~~~~~~~~~~~~~~  228 (298)
T c1in8A_         158 IKRAASLM-------DVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADR--INTDIVLKTMEVLNIDDEGLDE  228 (298)
T ss_dssp             HHHHHHHT-------TCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSS--BCHHHHHHHHHHHTCCTTCCCH
T ss_pred             HHHHHHHC-------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCHHHHH
T ss_conf             99999982-------98558899999999839998999999999999998529887--6989999999751255101114


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             888999999998413585469999999996589989999999
Q batch____       254 RFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRC  295 (447)
Q Consensus       254 ~hyd~iSA~~KsiRgsD~daal~~lar~l~~gedp~~i~Rrl  295 (447)
                      .....+.++.+.+++..  +++.++++.+  |++...+..++
T Consensus       229 ~~~~~~~~l~~~~~~~~--~~~~~ia~~l--~~~~~~~~~~~  266 (298)
T c1in8A_         229 FDRKILKTIIEIYRGGP--VGLNALAASL--GVEADTLSEVY  266 (298)
T ss_dssp             HHHHHHHHHHHHSTTCC--BCHHHHHHHH--TSCHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCH--HHHHHHHHHC--CCCHHHHHHHH
T ss_conf             68999999999817695--4799999985--99989999997