Return to main results Retrieve Phyre Job Id

Job DescriptionP09424
Confidence97.89%DateThu Jan 5 11:02:22 GMT 2012
Rank7Aligned Residues124
% Identity16%Templatec3c7cB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:octopine dehydrogenase; PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine)
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40... ......50.........60.........70.........
Predicted Secondary structure 










.












Query SS confidence 










































.



































Query Sequence  MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNAR. HSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQ
Query Conservation 






 


 

 
   
      
  
         
  
.  
 
   
       
  
                
Alig confidence 










































.



































Template Conservation 


 





 
 


  

   
  
 
                                        

 
  


  
Template Sequence  VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG
Template Known Secondary structure 

STTSTT

STTTTS

TTS


SS
TT
Template Predicted Secondary structure 





































Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   80.........90.........100... ......110.........120....
Predicted Secondary structure 




..................










Query SS confidence 























. . . . . . . . . . . . . . . . . .




















Query Sequence  VDLVTTAVGPVVLERIAPAIAKGQ. . . . . . . . . . . . . . . . . . VKRKEQGNESPLNIIACENMV
Query Conservation   




 

          
   
..................  
       




 


  
Alig confidence 























..................




















Template Conservation 





 


     

  


 
    


  

  
        
        
    
 
Template Sequence  ADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQCRDILGDKAAAVSMMSFETLP
Template Known Secondary structure 
S
S
GGGTTT

TT
TT

SSGGGGGTSSS
S
Template Predicted Secondary structure 






















Template SS confidence 






























































   83......90.........100.........110.........120.........130.........140.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions