Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	T	Y	Q	K	R	K	A	S	K	E	Y	G	L	Y	N	Q	C	K	K	L	N	D	D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	Q	D	A	V	R	L	A	I
Secondary structure
SS confidence
Disorder		?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	F	C	S	D	K	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K
Secondary structure
SS confidence
Disorder																									?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	K	A	T	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D	K	R	V	L	S	V	L	C	D	E	L	K	K	N	T	V	Y	D	D
Secondary structure
SS confidence
Disorder							?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence		I	I	E	A	A	G	E	L	G	D	K	T	L	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K	R	S
Secondary structure
SS confidence
Disorder																																						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oyz chain A Region: 5 - 280 Aligned: 273 Modelled: 276 Confidence: 100.0% Identity: 99% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: PBS lyase HEAT-like repeat Phyre2 PDB 3ltj chain A Region: 17 - 278 Aligned: 185 Modelled: 192 Confidence: 99.9% Identity: 24% PDB header:protein binding Chain: A: PDB Molecule:alpharep-4; PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats Phyre2 PDB 2db0 chain B Region: 18 - 279 Aligned: 203 Modelled: 204 Confidence: 99.7% Identity: 17% PDB header:protein binding Chain: B: PDB Molecule:253aa long hypothetical protein; PDBTitle: crystal structure of ph0542 Phyre2 PDB 1gw5 chain B Region: 2 - 279 Aligned: 277 Modelled: 278 Confidence: 99.7% Identity: 13% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: Clathrin adaptor core protein Phyre2 PDB 3c5w chain A Region: 23 - 278 Aligned: 199 Modelled: 200 Confidence: 99.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:pp2a a subunit; PDBTitle: complex between pp2a-specific methylesterase pme-1 and pp2a core2 enzyme Phyre2 PDB 3l6y chain A Region: 17 - 278 Aligned: 261 Modelled: 262 Confidence: 99.5% Identity: 11% PDB header:cell adhesion Chain: A: PDB Molecule:catenin delta-1; PDBTitle: crystal structure of p120 catenin in complex with e-cadherin Phyre2 PDB 1te4 chain A Region: 2 - 118 Aligned: 108 Modelled: 117 Confidence: 99.5% Identity: 17% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: PBS lyase HEAT-like repeat Phyre2 PDB 3b2a chain A Region: 5 - 278 Aligned: 215 Modelled: 218 Confidence: 99.5% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the archaeal heat-like repeats protein ton_19372 from thermococcus onnurineus na1 Phyre2 PDB 3l9t chain A Region: 2 - 130 Aligned: 129 Modelled: 129 Confidence: 99.5% Identity: 16% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein smu.31; PDBTitle: the crystal structure of smu.31 from streptococcus mutans ua159 Phyre2 PDB 1w63 chain A Region: 24 - 279 Aligned: 255 Modelled: 256 Confidence: 99.4% Identity: 13% PDB header:endocytosis Chain: A: PDB Molecule:adapter-related protein complex 1 gamma 1 PDBTitle: ap1 clathrin adaptor core Phyre2 PDB 1lrv chain A Region: 30 - 277 Aligned: 183 Modelled: 214 Confidence: 99.4% Identity: 25% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: Leucine-rich repeat variant Phyre2 PDB 2jkr chain L Region: 24 - 279 Aligned: 256 Modelled: 256 Confidence: 99.2% Identity: 10% PDB header:endocytosis Chain: L: PDB Molecule:ap-2 complex subunit alpha-2; PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse Phyre2 PDB 3nmw chain A Region: 5 - 278 Aligned: 225 Modelled: 234 Confidence: 99.1% Identity: 13% PDB header:cell adhesion/cell cycle Chain: A: PDB Molecule:apc variant protein; PDBTitle: crytal structure of armadillo repeats domain of apc Phyre2 PDB 1v18 chain A domain 1 Region: 25 - 279 Aligned: 254 Modelled: 255 Confidence: 99.1% Identity: 12% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: Armadillo repeat Phyre2 PDB 1xm9 chain A domain 1 Region: 22 - 278 Aligned: 256 Modelled: 257 Confidence: 99.1% Identity: 10% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: Plakophilin 1 helical region Phyre2 PDB 1u6g chain C Region: 16 - 278 Aligned: 244 Modelled: 244 Confidence: 99.0% Identity: 14% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: HEAT repeat Phyre2 PDB 1b3u chain A Region: 2 - 118 Aligned: 117 Modelled: 117 Confidence: 99.0% Identity: 14% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: HEAT repeat Phyre2 PDB 1m5n chain S Region: 16 - 278 Aligned: 263 Modelled: 263 Confidence: 99.0% Identity: 10% PDB header:protein transport Chain: S: PDB Molecule:importin beta-1 subunit; PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp Phyre2 PDB 3ifq chain B Region: 24 - 277 Aligned: 243 Modelled: 243 Confidence: 98.9% Identity: 14% PDB header:cell adhesion Chain: B: PDB Molecule:plakoglobin; PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins Phyre2 PDB 1jdh chain A Region: 24 - 278 Aligned: 244 Modelled: 244 Confidence: 98.9% Identity: 14% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: Armadillo repeat Phyre2 1 d1oyza_ 2 c3ltjA_ 3 c2db0B_ 4 d1gw5b_ 5 c3c5wA_ 6 c3l6yA_ 7 d1te4a_ 8 c3b2aA_ 9 c3l9tA_ 10 c1w63A_ 11 d1lrva_ 12 c2jkrL_ 13 c3nmwA_ 14 d1v18a1 15 d1xm9a1 16 d1u6gc_ 17 d1b3ua_ 18 c1m5nS_ 19 c3ifqB_ 20 d1jdha_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oyza_ 100.0 99 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:PBS lyase HEAT-like repeat 2 c3ltjA_ 99.9 24 PDB header:protein binding Chain: A: PDB Molecule:alpharep-4; PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats 3 c2db0B_ 99.7 17 PDB header:protein binding Chain: B: PDB Molecule:253aa long hypothetical protein; PDBTitle: crystal structure of ph0542 4 d1gw5b_ 99.7 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin adaptor core protein 5 c3c5wA_ 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:pp2a a subunit; PDBTitle: complex between pp2a-specific methylesterase pme-1 and pp2a core2 enzyme 6 c3l6yA_ 99.5 11 PDB header:cell adhesion Chain: A: PDB Molecule:catenin delta-1; PDBTitle: crystal structure of p120 catenin in complex with e-cadherin 7 d1te4a_ 99.5 17 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:PBS lyase HEAT-like repeat 8 c3b2aA_ 99.5 11 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the archaeal heat-like repeats protein ton_19372 from thermococcus onnurineus na1 9 c3l9tA_ 99.5 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein smu.31; PDBTitle: the crystal structure of smu.31 from streptococcus mutans ua159 10 c1w63A_ 99.4 13 PDB header:endocytosis Chain: A: PDB Molecule:adapter-related protein complex 1 gamma 1 PDBTitle: ap1 clathrin adaptor core 11 d1lrva_ 99.4 25 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Leucine-rich repeat variant 12 c2jkrL_ 99.2 10 PDB header:endocytosis Chain: L: PDB Molecule:ap-2 complex subunit alpha-2; PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse 13 c3nmwA_ 99.1 13 PDB header:cell adhesion/cell cycle Chain: A: PDB Molecule:apc variant protein; PDBTitle: crytal structure of armadillo repeats domain of apc 14 d1v18a1 99.1 12 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 15 d1xm9a1 99.1 10 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Plakophilin 1 helical region 16 d1u6gc_ 99.0 14 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:HEAT repeat 17 d1b3ua_ 99.0 14 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:HEAT repeat 18 c1m5nS_ 99.0 10 PDB header:protein transport Chain: S: PDB Molecule:importin beta-1 subunit; PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp 19 c3ifqB_ 98.9 14 PDB header:cell adhesion Chain: B: PDB Molecule:plakoglobin; PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins 20 d1jdha_ 98.9 14 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 21 c3nowA_ not modelled 98.9 17 PDB header:protein binding Chain: A: PDB Molecule:unc-45 protein, sd10334p; PDBTitle: unc-45 from drosophila melanogaster 22 c2z6hA_ not modelled 98.9 15 PDB header:cell adhesion Chain: A: PDB Molecule:catenin beta-1; PDBTitle: crystal structure of beta-catenin armadillo repeat region2 and its c-terminal domain 23 c4a0cB_ not modelled 98.8 16 PDB header:cell cycle Chain: B: PDB Molecule:cullin-associated nedd8-dissociated protein 1; PDBTitle: structure of the cand1-cul4b-rbx1 complex 24 d1lsha1 not modelled 98.7 11 Fold:alpha-alpha superhelix Superfamily:Lipovitellin-phosvitin complex, superhelical domain Family:Lipovitellin-phosvitin complex, superhelical domain 25 c2z6gA_ not modelled 98.7 13 PDB header:cell adhesion Chain: A: PDB Molecule:b-catenin; PDBTitle: crystal structure of a full-length zebrafish beta-catenin 26 d1ibrb_ not modelled 98.6 11 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 27 d1ee4a_ not modelled 98.6 17 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 28 c3gq2B_ not modelled 98.5 14 PDB header:transport protein Chain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain 29 d1q1sc_ not modelled 98.5 16 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 30 c2w3cA_ not modelled 98.5 9 PDB header:transport protein Chain: A: PDB Molecule:general vesicular transport factor p115; PDBTitle: globular head region of the human general vesicular2 transport factor p115 31 c1pjmB_ not modelled 98.4 16 PDB header:protein transport Chain: B: PDB Molecule:importin alpha-2 subunit; PDBTitle: mouse importin alpha-bipartite nls from human2 retinoblastoma protein complex 32 c3bctA_ not modelled 98.3 11 PDB header:armadillo repeat Chain: A: PDB Molecule:beta-catenin; PDBTitle: the armadillo repeat region from murine beta-catenin 33 c3t7uA_ not modelled 98.2 14 PDB header:cell adhesion Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: a new crytal structure of apc-arm 34 c2qnaA_ not modelled 98.2 11 PDB header:transport protein Chain: A: PDB Molecule:importin subunit beta-1; PDBTitle: crystal structure of human importin-beta (127-876) in complex with the2 ibb-domain of snurportin1 (1-65) 35 c2c1tA_ not modelled 98.2 17 PDB header:protein transport/membrane protein Chain: A: PDB Molecule:importin alpha subunit; PDBTitle: structure of the kap60p:nup2 complex 36 c2ot8B_ not modelled 98.2 15 PDB header:transport protein Chain: B: PDB Molecule:transportin-1; PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex 37 c1xqrA_ not modelled 98.1 13 PDB header:chaperone Chain: A: PDB Molecule:hspbp1 protein; PDBTitle: crystal structure of the hspbp1 core domain 38 c2jdqB_ not modelled 98.1 15 PDB header:protein transport Chain: B: PDB Molecule:importin alpha-1 subunit; PDBTitle: c-terminal domain of influenza a virus polymerase pb22 subunit in complex with human importin alpha5 39 c1lshA_ not modelled 98.1 10 PDB header:lipid binding protein Chain: A: PDB Molecule:lipovitellin (lv-1n, lv-1c); PDBTitle: lipid-protein interactions in lipovitellin 40 d1xqra1 not modelled 98.1 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:HspBP1 domain 41 c3nmzB_ not modelled 98.0 10 PDB header:cell adhesion/cell cycle Chain: B: PDB Molecule:apc variant protein; PDBTitle: crytal structure of apc complexed with asef 42 c2of3A_ not modelled 98.0 13 PDB header:structural protein, cell cycle Chain: A: PDB Molecule:zyg-9; PDBTitle: tog domain structure from c.elegans zyg9 43 c2qk2A_ not modelled 98.0 14 PDB header:protein binding Chain: A: PDB Molecule:lp04448p; PDBTitle: structural basis of microtubule plus end tracking by xmap215, clip-1702 and eb1 44 c2qk1A_ not modelled 97.8 14 PDB header:protein binding Chain: A: PDB Molecule:protein stu2; PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1 45 c1wa5B_ not modelled 97.5 14 PDB header:nuclear transport Chain: B: PDB Molecule:importin alpha subunit; PDBTitle: crystal structure of the exportin cse1p complexed with its2 cargo (kap60p) and rangtp 46 d1wa5b_ not modelled 97.5 14 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 47 d1qbkb_ not modelled 97.3 12 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 48 c3oqsA_ not modelled 97.2 12 PDB header:protein transport Chain: A: PDB Molecule:importin subunit alpha-2; PDBTitle: crystal structure of importin-alpha bound to a clic4 nls peptide 49 c3oc3B_ not modelled 97.0 12 PDB header:hydrolase/transcription Chain: B: PDB Molecule:helicase mot1; PDBTitle: crystal structure of the mot1 n-terminal domain in complex with tbp 50 d1qgra_ not modelled 94.3 11 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 51 d2bpta1 not modelled 94.2 11 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 52 d2i9ca1 not modelled 91.5 16 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:RPA1889-like 53 c2wxoA_ not modelled 90.2 10 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic PDBTitle: the crystal structure of the murine class ia pi 3-kinase2 p110delta in complex with as5. 54 c3opbA_ not modelled 87.6 12 PDB header:protein binding Chain: A: PDB Molecule:swi5-dependent ho expression protein 4; PDBTitle: crystal structure of she4p 55 c2y3aA_ not modelled 85.8 14 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941 56 c2rd0A_ not modelled 84.9 12 PDB header:transferase/oncoprotein Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic PDBTitle: structure of a human p110alpha/p85alpha complex 57 d1ho8a_ not modelled 83.3 7 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Regulatory subunit H of the V-type ATPase 58 d1e7ua1 not modelled 82.8 17 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Phoshoinositide 3-kinase (PI3K) helical domain 59 c1e8zA_ not modelled 80.9 18 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit; PDBTitle: structure determinants of phosphoinositide 3-kinase2 inhibition by wortmannin, ly294002, quercetin, myricetin3 and staurosporine 60 c2l1lB_ not modelled 80.6 14 PDB header:nuclear protein Chain: B: PDB Molecule:exportin-1; PDBTitle: nmr solution structure of the phi0 pki nes peptide in complex with2 crm1-rangtp 61 c3o2qD_ not modelled 76.8 12 PDB header:hydrolase Chain: D: PDB Molecule:symplekin; PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 62 c3odsA_ not modelled 75.9 14 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the k185a mutant of the n-terminal domain of2 human symplekin 63 c3o2tA_ not modelled 75.4 12 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the n-terminal domain of human symplekin 64 c3odrA_ not modelled 62.3 13 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the n-terminal domain of human symplekin 65 d2b6ca1 not modelled 59.0 12 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:BC3264-like 66 d1wa5c_ not modelled 51.7 12 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 67 c2iw3B_ not modelled 47.6 10 PDB header:translation Chain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp 68 c1vsy5_ not modelled 44.9 17 PDB header:hydrolase Chain: 5: PDB Molecule:proteasome activator blm10; PDBTitle: proteasome activator complex 69 d1z3xa1 not modelled 38.3 18 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:GUN4-associated domain 70 c3gs3A_ not modelled 34.8 15 PDB header:transcription, protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: structure of the n-terminal heat domain of symplekin from d.2 melanogaster 71 d1t06a_ not modelled 33.4 9 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:BC3264-like 72 c2x6kB_ not modelled 33.3 10 PDB header:transferase Chain: B: PDB Molecule:phosphotidylinositol 3 kinase 59f; PDBTitle: the crystal structure of the drosophila class iii pi3-kinase2 vps34 in complex with pi-103 73 d1l5ja1 not modelled 28.1 24 Fold:alpha-alpha superhelix Superfamily:Aconitase B, N-terminal domain Family:Aconitase B, N-terminal domain 74 c3ls8A_ not modelled 24.2 13 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit PDBTitle: crystal structure of human pik3c3 in complex with 3-[4-(4-2 morpholinyl)thieno[3,2-d]pyrimidin-2-yl]-phenol 75 c3m1iC_ not modelled 22.2 15 PDB header:protein transport Chain: C: PDB Molecule:exportin-1; PDBTitle: crystal structure of yeast crm1 (xpo1p) in complex with yeast ranbp12 (yrb1p) and yeast rangtp (gsp1pgtp) 76 d2p7vb1 not modelled 16.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 77 c1dvpA_ not modelled 16.2 10 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 78 c2l7kA_ not modelled 12.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cd1104.2 from clostridium difficile,2 northeast structural genomics consortium target cfr130 79 c3zyqA_ not modelled 12.8 13 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 80 c3ibvB_ not modelled 10.6 12 PDB header:rna binding protein Chain: B: PDB Molecule:exportin-t; PDBTitle: karyopherin cytosolic state 81 d1upka_ not modelled 10.5 19 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Mo25 protein 82 c3gjxD_ not modelled 9.9 21 PDB header:protein transport Chain: D: PDB Molecule:exportin-1; PDBTitle: crystal structure of the nuclear export complex crm1-2 snurportin1-rangtp 83 d1x3zb1 not modelled 9.9 12 Fold:XPC-binding domain Superfamily:XPC-binding domain Family:XPC-binding domain 84 c1x4qA_ not modelled 7.3 11 PDB header:rna binding protein Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3; PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3) 85 c2qsgX_ not modelled 6.6 12 PDB header:dna binding protein/dna Chain: X: PDB Molecule:uv excision repair protein rad23; PDBTitle: crystal structure of rad4-rad23 bound to a uv-damaged dna 86 c2x19B_ not modelled 6.5 11 PDB header:nuclear transport Chain: B: PDB Molecule:importin-13; PDBTitle: crystal structure of importin13 - rangtp complex 87 c1l5jB_ not modelled 6.1 23 PDB header:lyase Chain: B: PDB Molecule:aconitate hydratase 2; PDBTitle: crystal structure of e. coli aconitase b. 88 c3bvsA_ not modelled 5.9 12 PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd 89 c1x5bA_ not modelled 5.9 13 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 90 d1dvpa1 not modelled 5.5 10 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 91 d1bvsa1 not modelled 5.4 23 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 92 d1ttya_ not modelled 5.1 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0