BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (60 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_C6DD21 Putative uncharacterized protein n=7 Tax=Enterob...    89   5e-17
UniRef50_B4ET66 Putative uncharacterized protein n=9 Tax=Enterob...    84   1e-15
UniRef50_P64498 Protein yoaG n=84 Tax=Enterobacteriaceae RepID=Y...    83   3e-15
UniRef50_Q6D753 Putative uncharacterized protein n=1 Tax=Pectoba...    82   5e-15
UniRef50_B5XW41 Putative uncharacterized protein n=5 Tax=Klebsie...    40   0.027

>UniRef50_C6DD21 Putative uncharacterized protein n=7 Tax=Enterobacteriaceae
           RepID=C6DD21_PECCP
          Length = 112

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 2   GKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
            K  + +TVTNN+NGVSVD +  T   L    ++AE +K+LVN VR YD + E +VCGW
Sbjct: 54  NKKGFLLTVTNNNNGVSVDKDLPTVEELKDKTISAEAVKELVNIVRGYDADEETNVCGW 112


>UniRef50_B4ET66 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae
           RepID=B4ET66_PROMH
          Length = 112

 Score = 84.4 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 1   MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
           +     T+T+TN +NGVSVD E E    LL P++A+ ++KDL+N VR YD + E +VCGW
Sbjct: 54  LSAQALTLTLTNKNNGVSVDKECEIK-DLLDPDMASLMVKDLINIVRGYDMDEEANVCGW 112


>UniRef50_P64498 Protein yoaG n=84 Tax=Enterobacteriaceae RepID=YOAG_ECO57
          Length = 60

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
          MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW
Sbjct: 1  MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60


>UniRef50_Q6D753 Putative uncharacterized protein n=1 Tax=Pectobacterium
          atrosepticum RepID=Q6D753_ERWCT
          Length = 84

 Score = 82.1 bits (201), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 5  TYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
           + +TVTNN+NGVSVD +      L    ++AE +K+LVN VR YD + E +VCGW
Sbjct: 29 GFLLTVTNNNNGVSVDKDFSALAELKDKTISAESVKELVNIVRGYDADEETNVCGW 84


>UniRef50_B5XW41 Putative uncharacterized protein n=5 Tax=Klebsiella
           RepID=B5XW41_KLEP3
          Length = 109

 Score = 39.7 bits (91), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 2   GKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDV 57
           GK   ++++TN ++G+SV+           P      +K +V  V  Y+   E  +
Sbjct: 52  GKQEISLSLTNAASGISVELHHPASGESATPAFIEGELKKIVQIVDGYEAAEETHI 107


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C6DD21 Putative uncharacterized protein n=7 Tax=Enterob...    90   2e-17
UniRef50_B4ET66 Putative uncharacterized protein n=9 Tax=Enterob...    84   2e-15
UniRef50_Q6D753 Putative uncharacterized protein n=1 Tax=Pectoba...    83   3e-15
UniRef50_P64498 Protein yoaG n=84 Tax=Enterobacteriaceae RepID=Y...    82   4e-15

Sequences not found previously or not previously below threshold:

UniRef50_B5XW41 Putative uncharacterized protein n=5 Tax=Klebsie...    39   0.035


CONVERGED!
>UniRef50_C6DD21 Putative uncharacterized protein n=7 Tax=Enterobacteriaceae
           RepID=C6DD21_PECCP
          Length = 112

 Score = 89.8 bits (221), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 2   GKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
            K  + +TVTNN+NGVSVD +  T   L    ++AE +K+LVN VR YD + E +VCGW
Sbjct: 54  NKKGFLLTVTNNNNGVSVDKDLPTVEELKDKTISAEAVKELVNIVRGYDADEETNVCGW 112


>UniRef50_B4ET66 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae
           RepID=B4ET66_PROMH
          Length = 112

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 1   MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
           +     T+T+TN +NGVSVD E E    LL P++A+ ++KDL+N VR YD + E +VCGW
Sbjct: 54  LSAQALTLTLTNKNNGVSVDKECEIK-DLLDPDMASLMVKDLINIVRGYDMDEEANVCGW 112


>UniRef50_Q6D753 Putative uncharacterized protein n=1 Tax=Pectobacterium
          atrosepticum RepID=Q6D753_ERWCT
          Length = 84

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 2  GKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
              + +TVTNN+NGVSVD +      L    ++AE +K+LVN VR YD + E +VCGW
Sbjct: 26 NNNGFLLTVTNNNNGVSVDKDFSALAELKDKTISAESVKELVNIVRGYDADEETNVCGW 84


>UniRef50_P64498 Protein yoaG n=84 Tax=Enterobacteriaceae RepID=YOAG_ECO57
          Length = 60

 Score = 82.5 bits (202), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
          MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW
Sbjct: 1  MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60


>UniRef50_B5XW41 Putative uncharacterized protein n=5 Tax=Klebsiella
           RepID=B5XW41_KLEP3
          Length = 109

 Score = 39.3 bits (90), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 2   GKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDV 57
           GK   ++++TN ++G+SV+           P      +K +V  V  Y+   E  +
Sbjct: 52  GKQEISLSLTNAASGISVELHHPASGESATPAFIEGELKKIVQIVDGYEAAEETHI 107


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.314    0.131    0.364 

Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,915,390
Number of Sequences: 3077464
Number of extensions: 4156388
Number of successful extensions: 10664
Number of sequences better than 1.0e-01: 5
Number of HSP's better than  0.1 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10648
Number of HSP's gapped (non-prelim): 14
length of query: 60
length of database: 1,040,396,356
effective HSP length: 32
effective length of query: 28
effective length of database: 941,917,508
effective search space: 26373690224
effective search space used: 26373690224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 87 (38.1 bits)
