BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (413 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteob... 855 0.0 UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobact... 469 e-131 UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepI... 462 e-128 UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio ... 416 e-115 UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteria... 395 e-108 UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammapro... 385 e-105 UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobac... 364 4e-99 UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_... 360 5e-98 UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophil... 358 2e-97 UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammapro... 355 1e-96 UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus p... 349 9e-95 UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID... 345 1e-93 UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepI... 336 1e-90 UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromon... 333 6e-90 UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophi... 325 1e-87 UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellacea... 308 2e-82 UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX 290 6e-77 UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157... 289 1e-76 UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4S... 281 3e-74 UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronos... 279 2e-73 UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomo... 278 2e-73 UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID... 273 6e-72 UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria... 272 2e-71 UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=... 267 5e-70 UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp... 265 2e-69 UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacter... 262 1e-68 UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae ... 262 2e-68 UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomon... 259 9e-68 UniRef50_D0W4G5 Site-specific recombinase, phage integrase famil... 258 3e-67 UniRef50_Q2T016 Site-specific recombinase, phage integrase famil... 257 7e-67 UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTA... 254 6e-66 UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 253 7e-66 UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio s... 252 2e-65 UniRef50_B8F737 Phage integrase family site specific recombinase... 251 2e-65 UniRef50_A7JZW2 Site-specific recombinase, phage integrase famil... 251 4e-65 UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_S... 247 5e-64 UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria ... 245 2e-63 UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root Rep... 243 7e-63 UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfo... 243 1e-62 UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacte... 241 5e-62 UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp.... 239 1e-61 UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaprote... 239 1e-61 UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella fer... 239 2e-61 UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovoran... 239 2e-61 UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae R... 238 4e-61 UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 235 2e-60 UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae R... 234 3e-60 UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas flu... 234 5e-60 UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola... 234 6e-60 UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5... 234 6e-60 UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter ... 233 8e-60 UniRef50_C0N6F7 Site-specific recombinase, phage integrase famil... 233 9e-60 UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli R... 233 1e-59 UniRef50_B0QT04 Prophage CP4-57-like integrase n=1 Tax=Haemophil... 232 2e-59 UniRef50_A6QCY9 Site-specific recombinase, phage integrase famil... 230 6e-59 UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea... 229 1e-58 UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio... 228 3e-58 UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteur... 228 3e-58 UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadacea... 228 4e-58 UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobac... 228 4e-58 UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BV... 227 6e-58 UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix chol... 227 7e-58 UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thio... 227 7e-58 UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriace... 227 8e-58 UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria Re... 226 2e-57 UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydroba... 226 2e-57 UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=... 226 2e-57 UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas inter... 225 2e-57 UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C... 225 3e-57 UniRef50_B6BKY5 DNA integration/recombination/inversion protein ... 224 4e-57 UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. ... 224 4e-57 UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillu... 224 5e-57 UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0... 223 8e-57 UniRef50_B4X5T7 Site-specific recombinase, phage integrase famil... 223 1e-56 UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacte... 221 3e-56 UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804... 221 3e-56 UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium ... 221 3e-56 UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobac... 221 3e-56 UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP13... 221 6e-56 UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VM... 220 7e-56 UniRef50_A5UG79 Prophage integrase n=1 Tax=Haemophilus influenza... 220 9e-56 UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio R... 219 1e-55 UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepI... 219 2e-55 UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacte... 218 2e-55 UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochl... 218 4e-55 UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enteroba... 218 4e-55 UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Si... 217 6e-55 UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enter... 216 1e-54 UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=... 215 2e-54 UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 Re... 215 2e-54 UniRef50_Q4K6S7 Site-specific recombinase, phage integrase famil... 214 6e-54 UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurel... 213 1e-53 UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Vermineph... 212 2e-53 UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria R... 212 2e-53 UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV 211 3e-53 UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillu... 211 3e-53 UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_A... 211 4e-53 UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomo... 211 5e-53 UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_P... 209 1e-52 UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholde... 208 3e-52 UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholde... 207 4e-52 UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=... 207 5e-52 UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria Rep... 207 7e-52 UniRef50_B7I6Z3 Site-specific recombinase, phage integrase famil... 206 1e-51 UniRef50_A7MTK6 Putative uncharacterized protein n=1 Tax=Vibrio ... 205 2e-51 UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria Rep... 204 3e-51 UniRef50_B9D1P3 DNA integration/recombination/inversion protein ... 204 7e-51 UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria ... 203 7e-51 UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butz... 203 8e-51 UniRef50_Q0C1T8 Site-specific recombinase, phage integrase famil... 203 9e-51 UniRef50_Q0BR52 DNA integration/recombination/inversion protein ... 202 2e-50 UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholde... 202 2e-50 UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalole... 201 3e-50 UniRef50_C8NCE3 Phage integrase family site-specific recombinase... 201 3e-50 UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZ... 201 4e-50 UniRef50_B9NUX0 Site-specific recombinase, phage integrase famil... 201 5e-50 UniRef50_A4VPC8 Site-specific recombinase, phage integrase famil... 199 2e-49 UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, pha... 199 2e-49 UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingell... 198 2e-49 UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp... 197 4e-49 UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales ... 197 5e-49 UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetoba... 196 1e-48 UniRef50_D0CDZ4 DNA integration/recombination/inversion protein ... 195 3e-48 UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepI... 194 6e-48 UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion p... 193 1e-47 UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcu... 192 1e-47 UniRef50_D1Y3S1 Site-specific recombinase, phage integrase famil... 192 1e-47 UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJ... 192 2e-47 UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID... 192 2e-47 UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 R... 191 5e-47 UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO 190 9e-47 UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria ... 189 1e-46 UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumann... 189 1e-46 UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 185 3e-45 UniRef50_C6UP78 Integrase n=13 Tax=Escherichia coli O157:H7 RepI... 185 3e-45 UniRef50_A7H0X5 DNA integration/recombination/inversion protein ... 183 1e-44 UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombina... 183 1e-44 UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphi... 181 4e-44 UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonad... 181 4e-44 UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria ... 179 1e-43 UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis ... 179 2e-43 UniRef50_C9M6R5 Site-specific recombinase, phage integrase famil... 177 5e-43 UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IG... 176 1e-42 UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrop... 176 2e-42 UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=... 175 2e-42 UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter... 175 3e-42 UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111... 174 5e-42 UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepI... 174 7e-42 UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni C... 170 8e-41 UniRef50_B5J5X2 Site-specific recombinase, phage integrase famil... 170 9e-41 UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root Rep... 170 1e-40 UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatu... 168 3e-40 UniRef50_A7H3V7 Putative site-specific recombinase, phage integr... 167 5e-40 UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobac... 167 7e-40 UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia... 162 3e-38 UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family... 161 5e-38 UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ... 159 2e-37 UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresis... 158 3e-37 UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integras... 157 6e-37 UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=... 157 6e-37 UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM40... 157 7e-37 UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphil... 157 7e-37 UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacte... 157 8e-37 UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE4... 157 1e-36 UniRef50_C8PFJ4 DNA integration/recombination/inversion protein ... 155 3e-36 UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella fer... 155 4e-36 UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9... 155 4e-36 UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus... 155 4e-36 UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3... 154 5e-36 UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EV... 152 2e-35 UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium ... 152 2e-35 UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family... 152 2e-35 UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family... 151 5e-35 UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus... 150 7e-35 UniRef50_B9KC61 Site-specific recombinase, phage integrase famil... 150 8e-35 UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp... 150 9e-35 UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobact... 149 2e-34 UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillu... 149 3e-34 UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltic... 149 3e-34 UniRef50_A6Q4N1 Site-specific recombinase, phage integrase famil... 148 4e-34 UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter l... 147 5e-34 UniRef50_B4WZP4 Site-specific recombinase, phage integrase famil... 146 1e-33 UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultu... 146 1e-33 UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QA... 145 3e-33 UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobial... 144 4e-33 UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein ... 144 5e-33 UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RK... 144 6e-33 UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepI... 144 8e-33 UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 ... 143 9e-33 UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU 143 1e-32 UniRef50_B9R123 Site-specific recombinase, phage integrase famil... 142 2e-32 UniRef50_A7I3A4 Putative prophage integrase n=1 Tax=Campylobacte... 142 3e-32 UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP... 142 3e-32 UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=... 141 5e-32 UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 140 8e-32 UniRef50_A4BQA0 Prophage CP4-like integrase n=1 Tax=Nitrococcus ... 139 2e-31 UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae... 139 2e-31 UniRef50_B0UW27 Prophage CP4-57-like integrase n=1 Tax=Haemophil... 139 3e-31 UniRef50_B1FYI2 Integrase family protein n=3 Tax=Burkholderia Re... 138 4e-31 UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacter... 137 6e-31 UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobactera... 137 1e-30 UniRef50_Q9RM38 Integrase (Fragment) n=56 Tax=Enterobacteriaceae... 135 2e-30 UniRef50_A1SXI0 Phage integrase n=1 Tax=Psychromonas ingrahamii ... 134 4e-30 UniRef50_C6V8W5 Integrase n=4 Tax=Enterobacteriaceae RepID=C6V8W... 134 6e-30 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 132 2e-29 UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus t... 132 2e-29 UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family... 132 3e-29 UniRef50_C1TKN0 Putative uncharacterized protein n=1 Tax=Dethios... 132 3e-29 UniRef50_C6ALV6 Prophage integrase n=1 Tax=Aggregatibacter aphro... 132 3e-29 UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria ... 131 4e-29 UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucle... 130 7e-29 UniRef50_C6RGV6 Phage integrase n=3 Tax=Campylobacter RepID=C6RG... 130 9e-29 UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3... 129 1e-28 UniRef50_D2QCK7 Integrase family protein n=1 Tax=Spirosoma lingu... 129 2e-28 UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis ... 129 2e-28 UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholde... 129 2e-28 UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter a... 129 3e-28 UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovor... 128 3e-28 UniRef50_B5J8B6 Site-specific recombinase, phage integrase famil... 128 4e-28 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 126 2e-27 UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobac... 125 2e-27 UniRef50_UPI0000F2F6E4 putative integrase n=1 Tax=Acinetobacter ... 125 3e-27 UniRef50_UPI0001BCF971 integrase n=1 Tax=Mannheimia haemolytica ... 125 3e-27 UniRef50_A4AB16 Phage integrase n=1 Tax=Congregibacter litoralis... 125 4e-27 UniRef50_UPI00016B13C2 phage integrase family protein n=1 Tax=Bu... 124 8e-27 UniRef50_B4W6V7 Site-specific recombinase, phage integrase famil... 124 9e-27 UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydroba... 124 9e-27 UniRef50_B6WTC3 Putative uncharacterized protein n=1 Tax=Desulfo... 123 1e-26 UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas inter... 123 1e-26 UniRef50_A5G0X3 Putative uncharacterized protein n=2 Tax=Acidiph... 123 2e-26 UniRef50_B5AXB8 Putative integrase n=1 Tax=Escherichia coli RepI... 122 2e-26 UniRef50_B1JLR8 Integrase family protein n=1 Tax=Yersinia pseudo... 122 2e-26 UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobac... 122 3e-26 UniRef50_Q0A9S4 Phage integrase family protein n=1 Tax=Alkalilim... 121 4e-26 UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas put... 121 4e-26 UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12... 121 6e-26 UniRef50_B5J7B6 Site-specific recombinase, phage integrase famil... 120 8e-26 UniRef50_A3JW30 Site-specfic recombinase, phage integrase family... 120 8e-26 UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8... 120 1e-25 UniRef50_B7A0D7 Integrase n=1 Tax=Escherichia coli O157:H7 str. ... 119 2e-25 UniRef50_A1ANR7 Phage integrase family protein n=1 Tax=Pelobacte... 119 3e-25 UniRef50_Q1YTS1 Putative phage integrase n=1 Tax=gamma proteobac... 118 3e-25 UniRef50_B5WB94 Integrase n=1 Tax=Burkholderia sp. H160 RepID=B5... 118 5e-25 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 117 7e-25 UniRef50_A3UHH5 Site-specfic recombinase, phage integrase family... 117 1e-24 UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria ... 115 3e-24 UniRef50_A4N808 DNA polymerase III subunit delta n=4 Tax=Haemoph... 115 4e-24 UniRef50_D1DCL4 Predicted protein n=8 Tax=Neisseria gonorrhoeae ... 115 4e-24 UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crun... 114 5e-24 UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaprot... 114 6e-24 >UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteobacteria RepID=INTA_ECOLI Length = 413 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/413 (100%), Positives = 413/413 (100%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF Sbjct: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT Sbjct: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE Sbjct: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM Sbjct: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG Sbjct: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA Sbjct: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG Sbjct: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 >UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobacteria RepID=B7MX56_ECO81 Length = 419 Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust. Identities = 225/413 (54%), Positives = 294/413 (71%), Gaps = 1/413 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MARKT PLT +IKAA+P +Y L DG GL LL+K SGSKLW+F YYRP K+R SF Sbjct: 7 MARKTHPLTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSF 66 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-K 119 G+ VSL+DARK R+E + L++ DPQ+H++++ + NTF VA W+ VK Sbjct: 67 GSLEDVSLADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKIS 126 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 ++ + DIWRSL++ +FP IG+ I + A V+ + P++ RG LET++R+ QR+N Sbjct: 127 QNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVN 186 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 EVM YA N+GLIDA P++N+ KAF P KK+MP+IRP+QLP+LM + ++ TR L Sbjct: 187 EVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLI 246 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 WQLLT+TRPAEA+ RWDEI+ +A +W IPA RMKM RDH +PLS A+A+LE MKP+S Sbjct: 247 EWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPIS 306 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 R ++FPS P QPMNSQT NAAL+R G GVLVSHGLR+I STA NEEGF PDVIEA Sbjct: 307 HHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEA 366 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 ALAHVD NEVRRAYNRS+Y+E+R +M+WW + V+AA +G + + IR V Sbjct: 367 ALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGEFVEAAATGVTLASGKRGIRAV 419 >UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepID=C9NQJ4_9VIBR Length = 415 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/413 (52%), Positives = 296/413 (71%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ T LT T+IK++KPKD +Y L+DGDGL L IK +GSK W YYRP ++R S Sbjct: 1 MAKTTVKLTPTKIKSSKPKDKEYNLFDGDGLRLRIKPNGSKHWILNYYRPSNRKRANLSL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++ARK+ E+K LLA+ IDPQE +K + +TF+ V +W+ +KK Sbjct: 61 GKYPDLSLANARKMTLEAKELLAQGIDPQEERKRHQLEQKANHEHTFINVTTKWFEIKKD 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 VT DYA DIWRSLE IFP + D+ + +I A +++ ++P++A+G+LETV+RL QR+NE Sbjct: 121 DVTPDYAVDIWRSLELHIFPQLSDVPVRDITAPQVIELLKPIEAKGSLETVKRLAQRLNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA N GL+ A P I AF+KP+K+NM ++ P +LP+LM + ASI +TRCL Sbjct: 181 VMNYATNCGLVQANPLTGIKAAFKKPKKENMAALTPAELPELMGAIANASIKRTTRCLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRP+EA+ ARW+EID++ W IP RMK R+H +PL++ L +LE++KP+SG Sbjct: 241 WQLHTMTRPSEASGARWEEIDWDEKVWTIPPERMKKRREHRIPLTEQMLELLEVIKPISG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 REFIFPS P +P NSQT N ALKR G G LVSHGLRS+AST LNE+GF PD+IEAA Sbjct: 301 HREFIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFEPDLIEAA 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 LAH D N+VR AYNR+DYLE+RRPMM WW+ ++ A GS+ +T + +++++ Sbjct: 361 LAHADDNQVRSAYNRTDYLERRRPMMCWWSGHIEEAAKGSLSVTGMKQLKVIN 413 >UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MWW9_VIBHB Length = 410 Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/403 (48%), Positives = 274/403 (67%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K +PL+ T++K K + ++ + DGDGL L I +G+K W F Y P TK+R Sbjct: 1 MAKKIRPLSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+ AR+ R + L+AK IDP+ H+ Q + A +T L VA+ W+ +K+ Sbjct: 61 GKYPDVSLATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQH 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SV+ DYADDIWRSLE IFP +G + + EI A T++ ++P++A+G+LETV+R+CQR+NE Sbjct: 121 SVSSDYADDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA N G ++A P NI + F+KP+ K+M +I P L L+ +M +I + TRC F Sbjct: 181 VMTYAVNCGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +QL T+TRP+E +A W+EIDF W IP +MKM RDH +PLSD + +L+ MKP+S Sbjct: 241 FQLHTLTRPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISF 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +++FPS K MNSQ+VNAA+KRAG G LVSHG+RSI STALNE+GF D IE Sbjct: 301 EHKYVFPSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELC 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 LAHVDKN +R YN ++YLE+RR +MQWW++ + +A + +L Sbjct: 361 LAHVDKNTIRDIYNNAEYLEERRNVMQWWSEYIISASKNTFIL 403 >UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteriaceae RepID=B7N6K6_ECOLU Length = 415 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/404 (48%), Positives = 273/404 (67%), Gaps = 3/404 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++ KPLT+ EI AKP+ DY+L DG+GL LL+K+SG K W F YY P+TK+RTK S Sbjct: 1 MPKQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK- 119 G YP V+L+ AR+ R + + LL + IDP++H + T VAE+W KK Sbjct: 61 GPYPVVTLAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRLQNECTLEKVAEQWLKEKKR 120 Query: 120 -TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + ++ED+A D+WRSLE +FP++G +TEI+ L + + P++ +G LET+RR+ R+ Sbjct: 121 TSDLSEDHAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL 180 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 NE+ +A + LI+ P+ N+ F+KP+K+NMP++ P +L +LM ++ ASI TRCL Sbjct: 181 NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 W+LLT RP EA ARW +ID +EW+IP MKMNR HTVPLS AL +L++M+P+ Sbjct: 241 IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV 300 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 S R ++FPS KP + M+ QT NAAL R G GG LV+HG+RSIA TA FP +V+E Sbjct: 301 SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTA-GAGHFPREVLE 359 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 +ALAH ++E+ AYNRSDYLEQRRP+MQWW + V AA +++ Sbjct: 360 SALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQALL 403 >UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammaproteobacteria RepID=A7ZQ61_ECO24 Length = 436 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/407 (47%), Positives = 264/407 (64%), Gaps = 6/407 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIK---SSGSKLWQFRYYRPLTKQRTK 57 MA+ K LTDTEIK+ KP + + L+DGDGL L I G K W FRY P+TK+RTK Sbjct: 28 MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK 87 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN- 116 S G YP ++L+ AR LR E LL IDPQ H ++ ++A +TF VA++W + Sbjct: 88 VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE 147 Query: 117 -VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 VK + +++D+A+DIWRSLER+IF +GD I EI+ L + ++P++ RG LET+RR+ Sbjct: 148 KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII 207 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 R+NE+ YA LI+ P+ N+G+ F KP+K+NMP++ P +LP+ + + ASI + T Sbjct: 208 SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET 267 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 R L WQLLT RP EA RW +ID W IPA MKM + H VPLS AL +L++M Sbjct: 268 RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM 327 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPP 354 K +SG RE++FPS P M+ QT NAA+ R G GG LV+HG+RSIA TA E G F Sbjct: 328 KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT 387 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 DV+EAALAH K+E+ AYNR++YL +R +MQWW+D V + I Sbjct: 388 DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQKCKVI 434 >UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobacillus minor 202 RepID=C8KXV2_9PAST Length = 406 Score = 364 bits (934), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 186/406 (45%), Positives = 255/406 (62%), Gaps = 3/406 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K PL DTEIK AKP+D Y + DG GL L++ +GSK W+F YYRP++K+R K + Sbjct: 1 MAKKVHPLVDTEIKKAKPEDKPYTMTDGQGLFLIVSPTGSKSWRFNYYRPISKKRAKIAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA++LS AR LR E K LLA IDPQEH K+ + K NT +AE+W K+T Sbjct: 61 GMYPAITLSKARALRDEYKHLLANGIDPQEHCKQLELQKLQFKQNTLFAIAEKWKQKKET 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V E WR LE+ IFP +GD+ I+EI L ++PV RG T + Q +NE Sbjct: 121 EVKEKTLKPRWRMLEKYIFPELGDLPISEISPLRLSNTIRPVFDRGIANTGLVIIQMVNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 +M++A N G+I+ N+ F K K+ P+IRP++LP+ M +R +++ + + L Sbjct: 181 IMVFAVNLGIIEFNKCSNVASTFNVKKTTKHQPTIRPEKLPEFMSALRDSAVDLVVKLLI 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 + LLT+ RP EAA A+WDEI+F+ + W IPA RMKM + TVPLS A+ +L +K ++ Sbjct: 241 EFSLLTMVRPNEAANAKWDEINFDDALWHIPAERMKMKKAFTVPLSSQAIKLLNKLKQIT 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV--I 357 G FIF S P +PM+S T NAA++R G G L SHGLRSIAST L+E+ +V I Sbjct: 301 GRSRFIFQSPRAPQKPMSSVTANAAIRRIGYNGKLTSHGLRSIASTYLSEKFIDINVEII 360 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 EA L+H KN +R AYNRS YLEQR+ +M W V+ + S+ L Sbjct: 361 EACLSHQGKNPIRNAYNRSTYLEQRKLLMADWGQFVEESMKSSLDL 406 >UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_HAES1 Length = 418 Score = 360 bits (924), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 180/417 (43%), Positives = 271/417 (64%), Gaps = 8/417 (1%) Query: 1 MARKTKPLTDTEIKAAKPKD------ADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ 54 M R T L + +I AAKPK D +L DG+GL LL+K++GSKLW+F YY+PLTK+ Sbjct: 1 MTRPTNLLNNRKIDAAKPKADEQGNLTDNKLQDGNGLYLLVKATGSKLWRFNYYKPLTKK 60 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 RT+ S GAYP VSL+ AR+LR + + LLA+DIDP EH++ + + NT+ VA W Sbjct: 61 RTEMSLGAYPDVSLAQARELRNQYRSLLAQDIDPNEHRQNVKQAKLDEINNTYEAVAWAW 120 Query: 115 WNVKKT--SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 + ++T + +E Y D+ ++R + P G + I++I A +KA + Q G LE ++ Sbjct: 121 FEYRQTKKNFSEGYKKDVASLIKRCLLPHFGSLPISQITAPMALKAFKQYQDEGTLEKLK 180 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASIS 232 R Q+ NE+M +A + LI P+ NI K F+ P ++ +I+P+ LP+ M+T+ A I+ Sbjct: 181 RTIQKHNEIMNFALHRDLISFNPTANISKEFDSPTVEHFKTIQPEDLPEFMYTLNNAQIN 240 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 + TR L +WQLLT+TRP EAA+AR+++ID + W IPA MK H + LS A+A+L Sbjct: 241 LRTRYLILWQLLTMTRPNEAAKARYEDIDEKSRLWTIPAENMKRGIAHKITLSRQAMALL 300 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 +K LSGG+ ++FP+ P +N+QT NAA+KR G G LV+HGLRSIAST LNE+G+ Sbjct: 301 REIKKLSGGKTYLFPNVKYPQTHVNTQTANAAIKRMGYQGKLVAHGLRSIASTYLNEKGY 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 ++IE AL+H++ + ++ AY+R + LEQR ++Q WAD V+ G++ HL ++ Sbjct: 361 NSELIEVALSHINSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGALPQYHLKRV 417 >UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophilus influenzae RepID=Q4QNN7_HAEI8 Length = 403 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 183/403 (45%), Positives = 250/403 (62%), Gaps = 2/403 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K KPL DTEIK AK + Y L DG GL L+I +GSK W+F YYRP+TK+R K S Sbjct: 1 MAKKVKPLVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA++LS AR+LR + + LLA IDPQE+ K+ + + NTF ++ +W K + Sbjct: 61 GLYPAITLSKARELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVS 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + WR+LE+ FP +GD I EI L V P+ RG T + + +NE Sbjct: 121 EIKSVTLKSRWRTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N G+I+ +N+ KAF + + P+IRP++LP+ M +R + I + + L Sbjct: 181 IMNFAVNKGIIEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + LLTITRP+EAA A+W+EIDF S W IPA RMKM + T+PLS L IL +K +SG Sbjct: 241 FSLLTITRPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE--EGFPPDVIE 358 FIF S+ P +P++S + NAA+KR G L SHGLRSIAST L+E +++E Sbjct: 301 RSRFIFQSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 A L+H KN+VR AYNRS YLEQR+P+M W D V+ SI Sbjct: 361 ACLSHQSKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMKKSI 403 >UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammaproteobacteria RepID=A0KW55_SHESA Length = 411 Score = 355 bits (912), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 176/408 (43%), Positives = 261/408 (63%), Gaps = 1/408 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R T LT + AK + Y+L DG L L ++++G K W+FRY RP T + T Sbjct: 1 MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YP VSL++AR E++ LA+ IDPQ + E + T +A+ W + K+ Sbjct: 60 GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 S+ + WR LE FP +G I+I+ + A + A++P++ +G LETV+R Q +NE Sbjct: 120 SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M ++ N+G I A P I + F K + +++ +++P +L +L+ T+ A++ ++TRCL Sbjct: 180 IMNFSVNSGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIE 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRP EAA ARW+EIDF+A W IP +RMKMNR+H +PL++ L ILE +KP+S Sbjct: 240 WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISE 299 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +F+FPS P + + +T+N AL R GL G HGLRS+AST LNE+GF DVIEAA Sbjct: 300 QSQFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA 359 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 LAHVDKN++R AYNR+ YLE+R +M+WW++ + A GS+ +T S+ Sbjct: 360 LAHVDKNQIRSAYNRTTYLERRTKLMEWWSNHIATAAVGSLSVTAGSR 407 >UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus parasuis SH0165 RepID=B8F555_HAEPS Length = 405 Score = 349 bits (896), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 182/405 (44%), Positives = 249/405 (61%), Gaps = 2/405 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K L DTEIK AK KD Y L DG GL LL+ +GSK W+F YY+P+TK+RTK + Sbjct: 1 MAKKVHQLVDTEIKKAKAKDKPYTLTDGGGLFLLVSITGSKSWRFNYYQPITKKRTKMAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+LS AR LR E K LLA DIDPQ++ K + + + NTFL +AE+W K Sbjct: 61 GMYPTVNLSKARALRDEYKKLLADDIDPQQYIKNKQQEKLQETQNTFLAIAEQWKQKKSA 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + WR LE FP +G+ISIT IK + + V P+ RG T L Q INE Sbjct: 121 EIKPATLKNHWRRLELYAFPTLGNISITMIKPLQVTELVTPLFLRGVNSTGVLLLQTINE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N G+I+ +I F K + ++ P+IRP+ LP+ +R + + + L Sbjct: 181 IMRFAVNRGIIEFNKCADIADTFVKSKSEHHPTIRPEHLPEFFAALRNSHADLIIKSLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + LLTI RP+EAA A+W EIDF S W IPA RMKM + T+PLS A+ IL+ ++ ++G Sbjct: 241 FSLLTIARPSEAANAKWAEIDFEQSLWNIPAERMKMKQPFTIPLSIQAVKILKKLQVITG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE--GFPPDVIE 358 +IF S KP+QP+ Q N +K+ G G L SHGLRSIA+T L+E+ ++IE Sbjct: 301 RSLYIFQSIKKPSQPIGKQIANNTIKQMGYKGKLTSHGLRSIANTYLSEKFIDLNVEIIE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 A L+H +N+VR AYNRS YLEQR+P+M W V+ + S+ L Sbjct: 361 ACLSHKSQNQVRNAYNRSTYLEQRKPLMNDWGQFVEESMKSSLDL 405 >UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4F8_HAES1 Length = 413 Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 179/400 (44%), Positives = 254/400 (63%), Gaps = 8/400 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR+ LT+T+I AKPKD DY L DG GL LL+KS+GSKLW+F YY L K+R S Sbjct: 1 MARQIIQLTNTKILNAKPKDKDYTLSDGQGLYLLVKSNGSKLWRFNYY-DLLKKRKLISL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEH---QKEQVRNSQEAKTNTFLLVAERWWNV 117 G+YP SL DAR R E + LLAKDI+PQ++ QKEQ +Q NT + VA+ W + Sbjct: 60 GSYPETSLLDARTKRDEYRALLAKDIEPQDYIFKQKEQAIFNQ---CNTLIGVAKDWREM 116 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K + V D D WR LE +FP +G++ I++I A +Q + E ++++ + Sbjct: 117 KSSKVEADTMKDQWRLLELHLFPHLGNMPISDITAPFTRMKLQKLADDKKFEMLKKVIRG 176 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 +NE+M +A N GLI P+ N+ + F + ++ PSI PD+LP+ + ++ A+I + TRC Sbjct: 177 LNEIMRFAVNAGLIQFNPTANLQELFPSGEVQHRPSIHPDKLPKFLESVNKANIQLQTRC 236 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-MNRDHTVPLSDGALAILEMMK 296 L WQLLT+ RP+EAA W EIDF W IP RMK R H VPLS A+ IL +M+ Sbjct: 237 LLEWQLLTMVRPSEAAGTMWREIDFENKTWLIPKDRMKGKKRSHLVPLSQQAINILNIMR 296 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 P++G +F+FP M+S+T+N AL++ G G+L +HG RSIASTALNE F ++ Sbjct: 297 PITGNCDFVFPKNGDLTTNMSSETINKALRKMGYQGILCAHGFRSIASTALNENEFNVEI 356 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 IEA L+HV ++VR AY+RS Y +Q+R ++WW + V+ + Sbjct: 357 IEALLSHVKGDKVRTAYDRSTYEKQKRQYIEWWGNFVEKS 396 >UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepID=Q5E028_VIBF1 Length = 399 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 166/398 (41%), Positives = 255/398 (64%), Gaps = 2/398 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR+ LTD +IK+A P ++ L DG+GL L ++ +G+K WQF++ P+T++ K + Sbjct: 1 MARQVIRLTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDPVTRKIQKIAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++AR E + LLA+ I+P+ ++ + ++ +T+TF++VAE+W+ KK Sbjct: 61 GPYPELSLANARSKTTEYRTLLAQKINPKSFEQSKELEAKRVQTSTFIVVAEQWFERKKE 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +V+ ++ WR+LE+ IFP + I + I A + ++P++ G TV+R+CQ +N+ Sbjct: 121 TVSPAHSYREWRTLEKYIFPHMSKIPVATITAVETIDVLRPLEKEGKYSTVKRICQSLNQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS-ISMSTRCLF 239 +M Y+ N GLI A P I K F K +MP+IRP+QLP + + + S I T+ L Sbjct: 181 IMDYSVNHGLIHANPLAKIIKVFRKNTVLHMPTIRPEQLPDFLKRLHSCSTIQTKTKLLI 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +WQL T+TRP EAA RW +ID W IPA MK ++H +PL+ A+ IL ++ S Sbjct: 241 LWQLHTMTRPKEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIRLQS 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRA-GLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 +++FP N ++ T NAA+KR+ GL LV+HGLR+IASTAL+E GF +IE Sbjct: 301 KRCDYVFPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALHEYGFDSLLIE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 A L+H D+NEVR +YNRSDYLEQR+ +M WW++ + A Sbjct: 361 ACLSHADQNEVRASYNRSDYLEQRKEIMCWWSNYIDEA 398 >UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromonadales RepID=A1SRI6_PSYIN Length = 416 Score = 333 bits (854), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 166/410 (40%), Positives = 244/410 (59%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 KT PL+DT+I+ K D L DG GL L IK +GSKLWQ R+ +P+ K+ FGAY Sbjct: 3 KTTPLSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGFGAY 62 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 PA+SL++ARKLR + LLA+ I+P+ + +++ + NTF +V W +K + V Sbjct: 63 PAISLANARKLREAANELLAQGINPKAQRDSEIKEKELILNNTFEMVTAAWIKLKASEVK 122 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 D I +L I P IG ITEI A ++A++P++A+G E + R CQ +N++M Sbjct: 123 PDSLKTISTTLTNHILPRIGKCPITEITAPMAIEALRPIEAKGNHEVIARACQYLNQIMR 182 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 YA N G+I + P I F + N P ++P++LPQL+ + TA+I TR L +WQL Sbjct: 183 YATNLGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIATANIKKITRNLILWQL 242 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 T+TRPAE A A+W+EID+ + W IP R+K H +PL+ LAILE K +SG + Sbjct: 243 HTMTRPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISGNSD 302 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 +IFP+ PN N + N A KR G G +HGLR +A T L+++G + EA L+H Sbjct: 303 YIFPADRNPNAHANKASANMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEACLSH 362 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 N V ++YN S YL QR +M WW++ ++ A G+I + +++VG Sbjct: 363 KVGNSVSQSYNHSTYLNQRIKIMAWWSNYIEEASYGNISMAGSKGVKVVG 412 >UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophilus RepID=Q4QL03_HAEI8 Length = 419 Score = 325 bits (834), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 162/413 (39%), Positives = 254/413 (61%), Gaps = 10/413 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA KPL+ TEI AKPK+ DY L DG GL LL+K +GSK+W+F+YY+P++K+RT S Sbjct: 5 MAVLVKPLSITEINNAKPKEKDYSLSDGQGLFLLVKMNGSKIWRFQYYKPISKKRTLISL 64 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL DAR++R + LLAK+IDPQ+++ +Q + + + + T + + W +KK Sbjct: 65 GVYPEISLKDAREIRDLYRSLLAKNIDPQDYRLQQEQKAIQERQFTLSEMGKEWLYLKKN 124 Query: 121 SV-----TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 V E DI + LER +F +G SI+EI A ++ ++P++ G L+T+ R+ Sbjct: 125 EVDTGRLKEVTFIDIGKRLERHLFKVLGHYSISEISAPLAIEKLKPLERAGKLDTLHRII 184 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 +N++MIY+ N G+I+ + +IG+ F +P +N P+IRP+QLP+L ++ +++ + T Sbjct: 185 GYLNQIMIYSVNRGVINYNATADIGRVFIRPIAENNPTIRPEQLPKLFEDLQNSTLEIET 244 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN----RDHTVPLSDGALAI 291 RC LLT R + W+ +DF S IP +MK +D +PLS A+ I Sbjct: 245 RCALELLLLTAGRAGAITQLEWENVDFENSLLNIPKEKMKGRQGKVQDFILPLSKQAVTI 304 Query: 292 LEMMKPLS-GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 L +++ L+ +F+FPS+ P QP++ +T N AL R G +L +HGLRS+ STA+NE Sbjct: 305 LRLLQKLNRCNSKFVFPSKKNPRQPISKETPNKALGRIGYRNILTAHGLRSVFSTAMNEA 364 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 F ++IE LAH + + VR YN++ Y+ QR MQWW + V+ A G ++ Sbjct: 365 EFNSEIIEVCLAHFEYSSVRGTYNKAKYMPQRIEYMQWWGNFVEEASDGKALM 417 >UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellaceae RepID=B3GXJ8_ACTP7 Length = 406 Score = 308 bits (789), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 159/400 (39%), Positives = 239/400 (59%), Gaps = 4/400 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + KPL +TE++ AK K A+Y L DG GL L +K S K W F Y P+TK+RT + Sbjct: 1 MPKIVKPLNNTEVEKAKIKPAEYSLSDGYGLYLRVKPSKVKTWIFNYQEPITKRRTNLTI 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA+S+++AR +R E + LLAK IDP+ +++EQ R E NTFL +A+ W + Sbjct: 61 GDYPAISIAEARTIREEYRALLAKGIDPKTNKEEQERQQAEQNDNTFLKLAQLWKEKRSK 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V W LE +FP +G +I +I L+KAV+P+ +G +T+ R+ N+ Sbjct: 121 EVEPLTMAKNWARLENHLFPVLGHYAIDKITPPILIKAVKPLNDKGINDTLHRILNLANQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 ++ Y G++ N+ A+ K + + P+I+P +LP+L+ + ++ T+ LF Sbjct: 181 ILNYGVTVGVLPFNACQNVSDAYHKETQTHHPAIKPSELPKLIADFQNSNRDFLTKVLFK 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD----HTVPLSDGALAILEMMK 296 WQLL++ RPAEA W EIDF+ + W IPA +MK R HTVPLS L ILE ++ Sbjct: 241 WQLLSMVRPAEAVSIEWAEIDFDKNLWFIPAEKMKKTRKGQFPHTVPLSSQMLKILESLR 300 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 P++G +F+FP +PN+ M+ +T+ AL++ G G+ SHGLRSIA T L ++ Sbjct: 301 PITGVNKFVFPHYSQPNKSMSKETITNALRKIGYRGIQDSHGLRSIARTYLEDQAVDFRA 360 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 E+ LAH NE +AYNR++Y+E RRP+MQ W D ++ Sbjct: 361 AESCLAHRIGNETSQAYNRAEYIELRRPLMQLWGDYCESC 400 >UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX Length = 394 Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 155/391 (39%), Positives = 230/391 (58%), Gaps = 2/391 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD ++K AKPKD Y+L DG G+ LLI ++GSK W+ +Y R K++ S G YP V+ Sbjct: 3 LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEKM-LSIGVYPDVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR+ R+E++ LLA DP E +KE+ Q + NTF +A W K + Y Sbjct: 61 LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+I + E+DIFP IG I EIK L++A++ ++ RGALE +R++ QR EV YA Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 TG D P+ ++ A P+K + P + ++LP ++ + + S+ T+ +LT Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E ARW++IDF W+IPA MKM R H VPLS+ + + + ++P+S +F Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI 300 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 R P +P++ +++N ++ G G L HG R ST L+E+GF IE LAHVDKN Sbjct: 301 GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +R YN + YL+ RR MMQW+AD + + S Sbjct: 361 SIRGTYNHALYLDGRREMMQWYADYIDSLSS 391 >UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157:H7 RepID=B3A9A3_ECO57 Length = 412 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 156/405 (38%), Positives = 235/405 (58%), Gaps = 17/405 (4%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 KPLT TE+K KP++ DY +YDG GL L + +G K+W+FRY P+TK+R + G +P Sbjct: 3 VKPLTVTEVKGMKPREKDYAVYDGFGLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFP 62 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS-VT 123 SL++AR++R E + ++A+ +DP +K + TF VA W+ KK S + Sbjct: 63 EFSLAEAREVRDELRRMIARGVDPVTEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELR 122 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + +I + + + P G SI +I A + A+ V + AL+ ++L R+NE+M Sbjct: 123 KPTLYNIEYEVYKYLVPFFGKYSIEKITAPVAINALDAVSDKNALQ--KKLISRLNEIMN 180 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLM-------HTMRTASISMSTR 236 YA N G + A P + I AF + K++ ++ ++LP+ + HT + A ++ Sbjct: 181 YAVNCGALKANPLLKIKTAFTGKKNKSLAALPVERLPEFLSWWDSVPHTYQIAHNAL--- 237 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 ++Q+LT+ RP EA +A W EIDF++ W IPA +MK +R+H VPLS A++IL M+ Sbjct: 238 ---LFQILTMVRPGEAIKAEWSEIDFDSGLWIIPAHKMKCHREHVVPLSSQAISILRTMQ 294 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 + GR F SR K + PM T+ + + G++ HG RS+ ST LNEEGF PDV Sbjct: 295 EIKRGRYVFFSSRTK-DAPMGRNTIKTPIAASKFKGIVTLHGFRSMWSTLLNEEGFNPDV 353 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 IEAALAH +++R YNR+ YLEQR+ MMQW D A G I Sbjct: 354 IEAALAHKSGDKIRDIYNRTIYLEQRKIMMQWVGDFFDDARKGVI 398 >UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4SSF4_AERS4 Length = 404 Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 153/405 (37%), Positives = 241/405 (59%), Gaps = 5/405 (1%) Query: 7 PLTDTEIKAAK--PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 PLTD + AK K +L D GL LL+ SG K W+ +Y R K++ K + G YP Sbjct: 2 PLTDITARQAKWSGKPNGDKLADEKGLFLLVNKSG-KYWKLKY-RHGGKEK-KLALGVYP 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 VSL +AR R E++ ++A+ IDP +K+ S+ N+ ++A W + + Sbjct: 59 EVSLREARAKRDEARRVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSP 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A + SLE D+FP +G + ITE+ A +++A++ V+ RGA ET R+ QR++ +M Y Sbjct: 119 GHATRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRY 178 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 A TG P+ ++ A + ++++ P++ +LP+ + ++ +TR +L Sbjct: 179 AIQTGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLML 238 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T+TRP E ARWDE D +EW+IPAARMKM +H VPLS ALA+L+ + L+G E Sbjct: 239 TMTRPGEVRFARWDEFDMERAEWRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHCEL 298 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 +FPS K PM+ T++ A+ R G G+ HG R++AST LNEEGF PDVIE LAH Sbjct: 299 LFPSERKLTNPMSENTLSYAMGRMGYKGIATPHGFRALASTTLNEEGFDPDVIERQLAHA 358 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 ++N+VR AY+R++YL+ RR ++QW AD + +++ + +++ Sbjct: 359 ERNKVRAAYHRAEYLDDRRKLLQWLADFYDSQRGSNVLPVNFNRV 403 >UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR55_9DELT Length = 401 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/394 (37%), Positives = 232/394 (58%), Gaps = 8/394 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD ++K KP Y++ D DG+ L + +G KLW+F+Y + + G YP VS Sbjct: 3 LTDVQVKGLKPGSTKYRVKDKDGMYLEVTPAGGKLWRFKYR--FNGKNKLLALGKYPDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ + ++ +A+ DP +K + + K NTF + + WW KK++ T +A Sbjct: 61 LAKAREKLSIARQQIAEGKDPAYIKKIE----KAEKENTFKAITDEWWRAKKSTWTPGHA 116 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + ++R LE D+ P + D I EI A +++ ++ +ARG +T RL Q + + I+A Sbjct: 117 EKVYRRLEIDVLPYLKDRPIKEITAREILEVLKKAEARGVTDTAYRLAQMCSNIFIFALA 176 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G + P+ +I KA K N P+I PD++ +L+ + + S + C +L Sbjct: 177 SGRAEHNPAADISKALTAHPKTNRPAITEPDEIKELLLAIDGFTGSYTVLCALKIAILVF 236 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E +A W EI+F+ + W +P+ RMKM R+H VPLS A+ IL+ + PL+G ++F Sbjct: 237 VRPGELRQASWAEINFDEALWYVPSQRMKMKREHLVPLSGQAVKILKDIHPLTGAGHYVF 296 Query: 307 PSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 PS ++PM+ T+NAAL+R G L +HG R++AST L+E G+P D+IE LAHVD Sbjct: 297 PSIRTNSRPMSENTLNAALRRLGYPQEKLCAHGFRTMASTRLHEMGWPSDIIEFQLAHVD 356 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 +N++R YNR++YL+QR MMQ WAD + +G Sbjct: 357 QNKIRGIYNRAEYLDQRTKMMQAWADYLDDLKTG 390 >UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomonas eutropha C91 RepID=Q0AH02_NITEC Length = 393 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 151/389 (38%), Positives = 218/389 (56%), Gaps = 4/389 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD+ I+AAKPK+ Y+L DG+GLTLLI GSK W++RY ++ + S G YP + Sbjct: 3 LTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRYL--FNEKESMLSLGKYPETT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR + K +L + I+P H+KE+ R + + N+F VA WW K + TE + Sbjct: 61 LAQARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTERHV 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 R +E DIFP IG + + A ++ V VQ+RGAL+ +R+ +VM YA Sbjct: 121 AYTLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMRYAVQ 180 Query: 188 TGLIDAVPSVNIGKA--FEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 GL + P+ +I A +K +K N I +LP L+ + TR LT Sbjct: 181 HGLSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQLMTLT 240 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R +E RW+EI F+ +EW+IP RMKM H VPLSD A+ +L +K L+ + Sbjct: 241 FIRTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSDPVLL 300 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FPS + + M++ T+ AL R G G + HG R +AST L+E+ F IE LAH + Sbjct: 301 FPSERRNGKTMSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQLAHAE 360 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 ++EV AYN + YLEQRR MMQWW + ++ Sbjct: 361 RDEVSAAYNHALYLEQRRKMMQWWGEYIE 389 >UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID=C6ALW6_AGGAN Length = 413 Score = 273 bits (699), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 232/405 (57%), Gaps = 13/405 (3%) Query: 1 MARKTKPLTDTEIKAAK-PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MAR K LT+T+++ K + L DG GL L I +G+K W+FRY RP+TK RTK + Sbjct: 1 MARIVKGLTNTQVERVKYTPNGKNVLNDGKGLFLEIYPTGAKKWRFRYERPITKARTKFN 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G +P+++L+ AR R E LLA+ IDPQEH K++ + Q NTFL AERW K+ Sbjct: 61 IGDHPSITLAQARVKRDEYNALLAQGIDPQEHAKQKHQALQFQLENTFLKWAERWKENKE 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA-------RGALETVR 172 V D WR +E + ++G I I ++ L++A+ P++A +T++ Sbjct: 121 KKVKADTLRKDWRRIEMYLLESLGQIPIDKVLPPLLIQALTPLEAMKDRRTGTADSDTLK 180 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASIS 232 R+ + NE++ YA N G I P +++ + ++ P I P++LP L+ + + Sbjct: 181 RVIRLANEILTYAMNAGAIPFNPCLSVKDIYSFAPAESHPHIEPEELPLLLTDISESKAQ 240 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 T+ L ++QLLT+ RP+EA+ A W E D W IPA +MKM H VPLS + +L Sbjct: 241 PRTKDLILFQLLTMVRPSEASNAEWAEFDLENKVWTIPAEKMKMKHPHKVPLSSQTIRLL 300 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE--- 349 + ++ +G + F+F SR K N+PMNSQ+VN AL G G +HGLRSI T + E Sbjct: 301 QHLQSQTGHKRFVFASRNKINEPMNSQSVNKALVDMGYKGKQDAHGLRSIGRTYIGEKQM 360 Query: 350 EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 +G+ +V+E +AH + Y+++D+ EQR P+MQ W D V+ Sbjct: 361 DGY--EVLEMCIAHKVGTSTGKIYDKADFFEQRIPIMQAWGDFVE 403 >UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria RepID=A4JAY4_BURVG Length = 405 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/400 (37%), Positives = 227/400 (56%), Gaps = 3/400 (0%) Query: 4 KTKPLTDTEIKAAKPKDAD-YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 KTKPLTD + + A+ +A +L+DG GL L ++SSGSK W+ +Y + +FG Sbjct: 2 KTKPLTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYR--FNGKENLLTFGD 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YPA SL+DAR R E+K LLA+ +P + + + A NTF VA W+ ++ + Sbjct: 60 YPATSLADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATW 119 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + +A+ + + L+R++FP IG I+ I A L+ V+ ++ R A ET R+ Q +V Sbjct: 120 SASHANRVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVF 179 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 YA T + PS ++ A + K+M + +LP+L+ ++ + TR + Sbjct: 180 RYAVATSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFL 239 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LT R E +A W EID EW+IPA +MKM R H VPL++ A+A+L ++ L+G R Sbjct: 240 ALTFVRTIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGHR 299 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++FP+ +P Q M+ T+ AL R G + HG R +AST LNE+GF D IE LA Sbjct: 300 RWLFPNSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLA 359 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 H +++ VR AYN ++YL +R MMQWWAD + I+ Sbjct: 360 HSEQDGVRAAYNHAEYLSERHRMMQWWADYLDKQSGAQII 399 >UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=Q8DF52_VIBVU Length = 452 Score = 267 bits (683), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 151/413 (36%), Positives = 227/413 (54%), Gaps = 48/413 (11%) Query: 27 DGDGLTLLIK----SSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLL 82 DGD L L ++ K WQF Y+ PLTK+R K + G YPA++L DARK LL Sbjct: 27 DGDNLYLRLRLGKNKKTKKSWQFNYHHPLTKKRIKLTIGNYPALTLKDARKKAENYLELL 86 Query: 83 AKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK------------------------ 118 K+IDPQE+++ N+ + F VAE+W+ K Sbjct: 87 EKNIDPQEYERTGGINAIDPDKRLFKDVAEKWFEEKILAEDKKKRQEKIDDANKRAKDEG 146 Query: 119 --KTSVTE--------DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGAL 168 K S E Y+ DI L+ I PA+G+I IT+++ + +A+QP A+G Sbjct: 147 REKASEQELEAVLRDIRYSKDIRGRLDNHILPALGNIPITKMETYLAQEALQPSYAKGI- 205 Query: 169 ETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRT 228 + ++CQ + VM YA+ G + + P ++ + F +K+ PSI+P+ L +LM M Sbjct: 206 -NMDKICQISSRVMGYAKKLGYMKSNPLSDLSEVFVNKRKQKQPSIKPEGLSELMKAMGE 264 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 +I+ TR F Q+ T+ R +E A+ RWDE+DF + KIP+ RMK +H +PL+ Sbjct: 265 RNITKVTRAGFEMQMHTLARASEIAKMRWDEVDFENNLIKIPSYRMKRLNEHFIPLTKYT 324 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQP-MNSQTVNAALKRAGLGGVLVSHGLRSIASTAL 347 +LE +KP S E++FP+ + ++P MN Q++NA LKRAG G LVSHG R + ST L Sbjct: 325 RGLLEYLKPFSSHLEYVFPADPRSSRPHMNQQSINANLKRAGFKGELVSHGFRHMGSTFL 384 Query: 348 NE-------EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 N+ E F DVIEA LAH D +++R YN ++Y+E RR ++++W D + Sbjct: 385 NDSKKYGANEKFDADVIEACLAHCDNDKIREIYNSAEYIEMRREILEFWGDYI 437 >UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ08_9PROT Length = 418 Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 149/394 (37%), Positives = 226/394 (57%), Gaps = 4/394 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IK AKP+ Y++ DG G+ + +K +G+K W+ Y R KQ+T + G YP V+ Sbjct: 3 LTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAY-RFADKQKT-LALGVYPDVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR R E++ LLA DP ++ Q + ++ A +N+F L+A + ++K + ++A Sbjct: 61 LADARDRRNEARKLLANGADPGAVKQSQKKQAKIAASNSFELIAREFHSLKTPMWSTNHA 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D ++LER+IFP G+ I+EI A ++ A++ +++R A E R+ QR+ V YA Sbjct: 121 ADWIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEVAARVLQRVRAVCAYAIA 180 Query: 188 TGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 TG P+ I A +P+ K+ ++ +LP + + T+ +LT Sbjct: 181 TGRARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLMLTF 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R E A+W E D +A WKIPA RMK H VPL+ A+ IL + PL+G E +F Sbjct: 241 VRTGEVRGAKWCEFDLDAKLWKIPAERMKSREPHIVPLAKQAIEILGELHPLTGHGEHLF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVD 365 P+R + ++ TV ++R G G + HG R+IAST LN G PDVIEA LAH + Sbjct: 301 PNRTGNGKVISENTVLKVIERLGYKGRMTGHGFRTIASTYLNGVGMIRPDVIEAQLAHTE 360 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 N R AYNR++Y+E R MMQ+WAD + A ++G Sbjct: 361 ANATRAAYNRANYMEYRAAMMQFWADTLDAMEAG 394 >UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacteria RepID=B4RZR6_ALTMD Length = 412 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 154/406 (37%), Positives = 221/406 (54%), Gaps = 12/406 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +IK A+ D L D GL LL+K +GSK W+ +Y R KQ+T + G YP V Sbjct: 2 PLTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKY-RFQGKQKT-LAIGVYPEV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL DAR+ +E++ L DIDP ++E+ S ++ F A WWN +K +E + Sbjct: 60 SLKDAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEGH 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A IW L + +G I EI +++ VQ ++ RGAL+ +R+ Q I V +A Sbjct: 120 AARIWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAV 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL-- 244 TG++ P+ + EK + + S+ ++LPQ + + +LL Sbjct: 180 QTGVLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVH 239 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T RP E A ARWDE D W+IPA RMKM DH VPLS ALA+LE KP S EF Sbjct: 240 TFVRPGELAGARWDEFDLEEKLWRIPAHRMKMKSDHIVPLSRQALAVLENTKPFSARFEF 299 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS------HGLRSIASTALNEEGFPPDVIE 358 +FPS + M+ T+ A+ R G G HG R+ AS+ LNE GF PD IE Sbjct: 300 VFPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSILNETGFNPDAIE 359 Query: 359 AALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKA-ADSGSIV 402 L+H+++N VR AY + + YLE+R+ MMQWW+D + + ++G++ Sbjct: 360 RQLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDSLKNNGNVT 405 >UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JSX8_PASHA Length = 413 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/407 (38%), Positives = 220/407 (54%), Gaps = 14/407 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKS--SGSKLWQFRYYRPLTKQRTKQ 58 MAR TK L T+I+ AK KD +Y L DGDGL L +K GSK+W F Y P TK RT Sbjct: 1 MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKIWIFNYTNPQTKNRTNL 60 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-- 116 + G YP ++L++AR + + L+ K IDPQE +K + ++ +TF VAE ++N Sbjct: 61 TIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAENRVNDTFRNVAESYFNGI 120 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 K+ + + W LE IFP IGD + EIK LV V + T+++L Q Sbjct: 121 YKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALVDIYSKVADKS--NTLKKLHQ 178 Query: 177 RINEVMIYAQNTGLIDAVPS-VNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 ++ VM +A G+I++ + + + KP N P+I ++LPQL + A +S T Sbjct: 179 LVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPN-PTIELEELPQLFTDLHNAKLSKQT 237 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD----HTVPLSDGALAI 291 L W LT RP EA A W EIDF W IP +MK D H+VPLS AL I Sbjct: 238 YALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKMKGKADKKRPHSVPLSSQALKI 297 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG 351 LEMMK S F+FP R ++PM++ TVN+ LKR G L +HG+R+ T L+ Sbjct: 298 LEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRNGYKDRLTAHGIRAFVKTFLSSRK 357 Query: 352 FPPDVIEAALAHV--DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 V E+ L+H+ +++ YNR D+LE+R P+MQ D + Sbjct: 358 VDRHVSESILSHLLEGGDDLENTYNRYDFLEERVPVMQLLGDYCEQC 404 >UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomonas RepID=A5W5R9_PSEP1 Length = 393 Score = 259 bits (663), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 144/387 (37%), Positives = 210/387 (54%), Gaps = 3/387 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT + AKP++ Y L D GLTL + +G K W FR+ L KQ + S G YP + Sbjct: 3 LTDTAARQAKPREKGYTLADSLGLTLYVAETGVKSWHFRFTW-LGKQ-ARISLGTYPEIG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR R E++ +A+ DP+E ++E+ AK TF V E W +K +TE Sbjct: 61 LKEARARRDEAREDVAQGKDPRESRREKKVERLGAKERTFRRVYEEWLEFRKGGLTESTV 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I ++E D+ PA G I IK ++ ++ ++ RG++ T + Q I +V YA Sbjct: 121 KVISNAMELDVLPAFGLRQIDSIKRADVITLIRRIERRGSITTAVKTRQWIGQVFRYAVA 180 Query: 188 TGLIDAVPSVNIGKAFEK-PQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G+I+ P+ + EK KN P + ++P ++ + + + +C +LT Sbjct: 181 IGMIEINPTAEMHAVTEKMAPHKNRPFLAFTEMPAIIKAIEESQSGLQLQCATKLLILTA 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RPAE +A W EID + + W IPA++MKM RDH VPLS A+ +L M P+SGG +++F Sbjct: 241 CRPAEVRKAEWSEIDLDTATWSIPASKMKMRRDHVVPLSRQAVELLRSMLPISGGLKYVF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P+R +P+ L R G G HG R + ST +N G+ D IE LAH D Sbjct: 301 PNRTDAVRPIGINYAVNLLDRCGYTGRQSPHGFRHLFSTEMNSRGYNKDWIERQLAHADS 360 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 + +R YN + YLEQRR MMQ WADLV Sbjct: 361 SAIRDVYNHATYLEQRRDMMQAWADLV 387 >UniRef50_D0W4G5 Site-specific recombinase, phage integrase family n=4 Tax=Neisseria RepID=D0W4G5_NEICI Length = 428 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 213/392 (54%), Gaps = 7/392 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D +I+ AKP + Y+L DG GL L I +SG KLW+F + +R S G YP VS Sbjct: 26 LNDRQIRNAKPAEKPYKLNDGKGLYLYINTSGGKLWRFDF--ACNGKRKTLSIGKYPTVS 83 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR+ ++ +LA DP E ++++ + A NTF +A RW T E++A Sbjct: 84 LAEARETAETARRMLAAGQDPSEAKQQEKEERKAAALNTFESIARRWHTDNLTRWKENHA 143 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R E D+FP +G + I EI+ + + + V ARG T ++ + V YA Sbjct: 144 ARVLRYFETDVFPVVGAMPIQEIRVNHIKTLLDSVMARGVNNTAEKIREWAGAVFDYAAL 203 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 L ++ P+ + + N P++ ++L + + A I R M +L Sbjct: 204 LELTESNPAHVLRRYIPSVPAGNRPALPREELTEFFCRLLLADIEPQNRIALMLIMLVFV 263 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRD-----HTVPLSDGALAILEMMKPLSGGR 302 R E RWDEIDF+A W IPA RMK + HTVPL+D L +L +K ++G Sbjct: 264 RNTELRGGRWDEIDFDARLWVIPAERMKHEKTAPKPPHTVPLADWTLELLAELKAITGDT 323 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++FPSR K + ++ T+ + G G+ HG R++AS+ LNE+GF PD IE LA Sbjct: 324 PYLFPSRTKKDGFISENTLGKIMNNMGYKGIATPHGFRALASSVLNEQGFNPDAIERQLA 383 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 HV++N +R AYNR+DY+ +RR MM+W++ ++ Sbjct: 384 HVEENRIRAAYNRADYMTERREMMEWYSGYLR 415 >UniRef50_Q2T016 Site-specific recombinase, phage integrase family n=30 Tax=Bacteria RepID=Q2T016_BURTA Length = 438 Score = 257 bits (656), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 146/396 (36%), Positives = 221/396 (55%), Gaps = 6/396 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++T PLTD +++ AKP + Y+L DG GL L + +GS+ W+ +Y + SF Sbjct: 41 MPKQTDPLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYR--FDGKEKLASF 98 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+ AR+ ++ LLA DP E ++E R +++F VA W+ +K Sbjct: 99 GVYPEVSLAQARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKD 158 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 TE YA+ + SLE D FP IG + +I+A +++ V+ ++ARG ET +R+ QR Sbjct: 159 GWTEVYANKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRA 218 Query: 181 VMIYAQNTGLIDAVPSVNIG--KAFEKPQK-KNMPSIRPDQLPQLMHTMRTASISMSTRC 237 V Y TG P+ +I +K Q K+M ++P ++PQLM + S T+ Sbjct: 219 VFQYGIMTGRCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQL 278 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + LT TR E A WDE D A+EW+IP RMKM H VPLS AL +L ++ Sbjct: 279 ALRFMALTFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRE 338 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 L+G + +F S ++ +++ T+ AL R G + HG R +A+T L E G+ DV+ Sbjct: 339 LNGNQRLVFYS-VQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVV 397 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 + LAH ++N+V AY ++YL +RR MMQ WAD + Sbjct: 398 DRQLAHAERNQVTAAYVHAEYLPERRKMMQHWADYL 433 >UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQ25_BRASB Length = 407 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 163/397 (41%), Positives = 224/397 (56%), Gaps = 14/397 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDT+ + AK + +L DG GL LLI G+K W+ YR KQRT + G YPAV Sbjct: 2 PLTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRL-AYRWHGKQRT-LALGVYPAV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 L +AR R ++K +A DIDP ++E+ R ++ A NTF VA W K + + Y Sbjct: 60 GLIEARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHENWKDARSPYY 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A I R LE D FPAIG SI ++ L+ ++ V+ RG ET RRL Q + ++ +A Sbjct: 120 AAQILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRFAI 179 Query: 187 NTGLIDAVPSVNIGKAFE---KPQK-KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 TG PSV++ A +PQ+ + MP +LP + + + S T+ Sbjct: 180 VTGRAKRDPSVDLKDALRATGEPQRHRAMPL---SELPTFLQKLESYSGEQQTKLALKLV 236 Query: 243 LLTITRPAEAAEARWDE---IDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 LT R E +W+E +D N++ W+IPA RMKM +H VPLS A+A L ++ LS Sbjct: 237 TLTFLRTTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRELRTLS 296 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIE 358 GG IFPS K M+S T+ AL R G G +HG R++AST LNE F D IE Sbjct: 297 GGSPNIFPSPGK-GDCMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNRDWIE 355 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 L+HV++NEVRRAYN ++++ RR MMQWWAD + A Sbjct: 356 RQLSHVERNEVRRAYNAAEWMPDRRRMMQWWADHITA 392 >UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 Length = 439 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 144/402 (35%), Positives = 220/402 (54%), Gaps = 19/402 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L +++ AKPKD Y++ DG GL L + + GSK W+ +Y RP K+ + +FG +P V+ Sbjct: 7 LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 66 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR R E+K LL + IDP+ QKE ++ + TF +A R W+ +ED+ Sbjct: 67 LAQARAKRDEAKKLLVQGIDPKVVQKEA--RAENSGAYTFEAIA-REWHASNKRWSEDHR 123 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R LE IFP IG I ++K L+ ++ V A G + +RL QR+ +M YA Sbjct: 124 SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ 183 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 ID+ P+ ++ A + ++ P++ + P+ + + + TR LLT Sbjct: 184 NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVKLSLLTFV 243 Query: 248 RPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEMM 295 R +E ARWDE DF+ S W+IPA R MKM +H VPLS A+ +L + Sbjct: 244 RSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQL 303 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG-F 352 K +SG +E +FP + M+ TVN+AL+ G + HG R++A AL E G + Sbjct: 304 KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW 363 Query: 353 PPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLV 393 D IE L+H ++N VR AY + S++L++RR MMQWWAD + Sbjct: 364 SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYL 405 >UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L516_9DELT Length = 417 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 150/412 (36%), Positives = 231/412 (56%), Gaps = 14/412 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +KT PLTD I+ AK D +++DG GL L + +G KLW+F+Y + + Sbjct: 1 MPKKTIPLTDVAIRNAKAADKPVKMFDGAGLFLQVTPTGGKLWRFKYL--FDGKEKLLAL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT----NTFLLVAERWWN 116 G +P V L AR+ R E++ L+A+ +DP E +K Q R E + NTF +VA R W+ Sbjct: 59 GKWPDVGLKMARQRRDEARALVAQGVDPSEKRK-QDRADAEGQAVENANTFAVVA-RDWH 116 Query: 117 VKKTSV-TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 K+ V +E +A I +E+ +FP G+I IT ++A ++ ++ ++ +G ET +RL Sbjct: 117 AKQVKVWSEGHAAKILARMEQHLFPVFGNIPITTLRAPAILPTLRDIEDKGNHETAKRLR 176 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMS 234 Q V +A +TG+ + ++ A + N P+I P + QL+ + S Sbjct: 177 QYCEAVFTFAISTGIAERNVGADLRGALAPCRATNRPAIIDPKGVAQLLRAIDGYQGSPV 236 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASE---WKIPAARMKMNRDHTVPLSDGALAI 291 T L RP E +A W EID +A++ W IPA +MKM RDH VPLS A+ I Sbjct: 237 TVAALRLAPLVFVRPGELRQAEWSEIDLDAADGPRWSIPAEKMKMRRDHVVPLSKQAVDI 296 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEE 350 + + L+G ++FP + M++ +NAAL+R G G + +HG R++AST LNE Sbjct: 297 ITEIYSLTGQDRYLFPCNRTKGRCMSNMALNAALRRMGYEQGEMCAHGFRAMASTLLNEL 356 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 G+ D+IE LAH ++N +R AYNR++YL +RR MMQ WAD + +G+ V Sbjct: 357 GWNSDLIERQLAHAERNSIRAAYNRAEYLPERRRMMQAWADYLDMLKAGAKV 408 >UniRef50_B8F737 Phage integrase family site specific recombinase n=4 Tax=Pasteurellaceae RepID=B8F737_HAEPS Length = 416 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 149/407 (36%), Positives = 229/407 (56%), Gaps = 23/407 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L T+I+ AKPKD DY L DG GL L+++ SG+K++ F YY+P TK RT + G YP +S Sbjct: 5 LVGTQIRQAKPKDKDYPLSDGGGLRLIVRKSGAKVFVFNYYKPYTKTRTNFTIGEYPEIS 64 Query: 68 LSDARKLRAESKVLLAKDIDP---QEHQKEQVRNSQEAKTNTFLLVAERWWNVK--KTSV 122 L ARK A+++ LLA++IDP +E K++ N E TF +A +W+ + K Sbjct: 65 LIQARKEHAKARALLAQNIDPVRQRELDKQEQANRLEL---TFEKMAVKWFEDRKLKADF 121 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 +E A D W +R I P G+ I+EI + A++P++ G LET+R+ +INEVM Sbjct: 122 SERTAKDTWALFKRHILPHFGNYPISEITPLIAINALKPLERAGKLETIRKTIAKINEVM 181 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMR----TASISMSTRCL 238 YA + GLI +IGK F+KP ++M +I+PD+L + + ++ Sbjct: 182 RYALHRGLIATNNLSDIGKEFDKPTPQSMNTIQPDELAEFLQAFYQKRDKGRFGLNVFYA 241 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN----RDHTVPLSDGALAILEM 294 M LLT RP+E A+A+W++ID W + N R H V LS ++ +L Sbjct: 242 VMLVLLTGGRPSEIAKAKWEDIDEKERLWAYQVQKGNKNLPEGRTHIVTLSRQSIELLNK 301 Query: 295 MKPLSG------GREFIFPSRI-KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTAL 347 M+ + F+F S K ++ +T+ A+ ++ L +HG+R + ST+L Sbjct: 302 MRHFNEVVNANIQSPFVFASVASKKTGHLSIETMRKAIIKSIGEDRLTTHGIRHLFSTSL 361 Query: 348 NEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 NE+ F D IE AL+H D+N +R +YN+++YLEQR M+Q WAD V+ Sbjct: 362 NEQNFNADWIERALSHKDRNRIRGSYNKANYLEQRFDMLQHWADYVE 408 >UniRef50_A7JZW2 Site-specific recombinase, phage integrase family protein n=2 Tax=Vibrio sp. Ex25 RepID=A7JZW2_VIBSE Length = 471 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 150/422 (35%), Positives = 225/422 (53%), Gaps = 37/422 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T+IK A D +Y L DG L L I+ +GSK W F Y TK+R K G+YP ++ Sbjct: 29 LTNTQIKNAAKSDKEYSLSDGGNLYLRIRKNGSKNWLFIYTDFSTKKRKKMGLGSYPNMT 88 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNS---------------------QEAKTNT 106 L + RK+ E + + K IDP+ +++Q + QE Sbjct: 89 LDEVRKVAKELRKQMTKGIDPKLFREKQKLDRLVESQLTFKAIAEKMLLKEEIQETTNRE 148 Query: 107 FLLVAERW-WNVKKTSVTEDYADDIWRS----------LERDIFPAIGDISITEIKAHTL 155 L+V ER +K T +D D I L+R+++P +G++ +T I A + Sbjct: 149 KLIVEERERARIKGTVFGQDEIDRITNKVRSSHRKRLFLKRNLYPKLGNLPLTYITAAGV 208 Query: 156 VKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR 215 + ++P+QA+G LE V+R C N+VM +A N+ +I + +I F K + +M + Sbjct: 209 ISVIEPMQAKGQLENVKRACCIANQVMKFAVNSNIIKSNCLADIKDNFAKSKVTHMLKVP 268 Query: 216 PDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK 275 P++L ++M M + TRC F Q+ T+ R E A RW +I+ W IPA K Sbjct: 269 PNELGEVMAIMSNNQMKPVTRCAFEMQMHTMARADELAAMRWCDINVKNKLWTIPAFYTK 328 Query: 276 MNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQP---MNSQTVNAALKRAGLGG 332 R+H VPL+D L ILE ++P+SG +FPS KPN ++ VN++L L G Sbjct: 329 GKREHLVPLNDYTLGILEFIRPISGEHIHVFPSD-KPNTKFPHISPYAVNSSLNLTSLKG 387 Query: 333 VLVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 LVSHG R IAST LNE + F D IE LAH+DKN R +YN + YL++R ++Q+W+D Sbjct: 388 RLVSHGFRGIASTYLNEHKQFREDAIEMCLAHLDKNTTRASYNSALYLDERYEILQFWSD 447 Query: 392 LV 393 + Sbjct: 448 YI 449 >UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_SALA4 Length = 449 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/419 (33%), Positives = 225/419 (53%), Gaps = 21/419 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L +I+ AKPK+ Y++ DG GL L + GSK W+ +Y RP K+ + +FG YP ++ Sbjct: 32 LNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTIT 91 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLL-VAERWWNVKKTSVTEDY 126 L++AR R +K LL++ IDP+ QK +Q +L R W+ + +ED+ Sbjct: 92 LAEARAKRDAAKKLLSQGIDPKVEQK----GAQAEIEGAYLFETIARQWHASNLTWSEDH 147 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + +LE+ IFP+IG I ++ L+ ++ V G + +RL QR+N +M + Sbjct: 148 SHRVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRFGV 207 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 L+++ P+ ++ A + + P++ P ++P+ + + + TR LLT Sbjct: 208 QNDLLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTF 267 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW E++F SEW IP R MKM +H VPLS A I + Sbjct: 268 IRSSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKR 327 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG- 351 + LSG E IFPS P + M+ TVN+AL+ G + HG R++A AL+E Sbjct: 328 LHALSGKGEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKL 387 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 + D IE L+HV++ V+ +Y + S+YLE+RR M+QWWAD + A +GSI +++ Sbjct: 388 WNDDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDANKNGSITPYDFARV 446 >UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria RepID=C6XEE3_METSD Length = 406 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 217/399 (54%), Gaps = 17/399 (4%) Query: 6 KPLTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ---SFG 61 K LTD + A + +L DG GL L + ++G+K W+FRY+ + + K+ S G Sbjct: 3 KNLTDLACRKATCEGKTLSKLSDGGGLYLWVYANGAKYWRFRYFIHVEGGKKKEMSLSLG 62 Query: 62 AYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS 121 YP VSL+DAR + + L+ IDP +K ++ ++ +TF +A W+ + Sbjct: 63 VYPEVSLNDARVEARKYQGLVDNGIDPATAKKAKLLQTKAEAGDTFAEIAREWYRKMMPT 122 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 TE +A DI R +E ++ P I I E++A +K ++ VQ RGA RL I +V Sbjct: 123 WTETHARDIERRIEINLIPFIPQKPIAELEAVDFLKPLEKVQERGATHLSHRLLINIRQV 182 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLM------HTMRTASISMST 235 YA G + +G A KN P+IRP++LP+LM H + + + Sbjct: 183 YKYAIAKGKCKYDVTPGLGNALIPHVAKNQPAIRPEELPKLMTDIADYHKLGEMKVQLGL 242 Query: 236 RCL-FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 + + +W R E RWDE+D+ A+ W++P RMKM+RDH +PL+ ILE Sbjct: 243 QLMAHVW-----LRTRELTFGRWDELDYEANLWRVPGERMKMDRDHLIPLTPQVKVILER 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPP 354 ++ L+ G E+I P R P+++ T+ AL R G + HG RS+AST LNE GF Sbjct: 298 LRVLARGSEYILPGR-NHLTPVSNNTLLYALYRLGYKSRMTGHGFRSVASTILNESGFNA 356 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 D IE LAHV +N VR AYNR++Y+++RR MM WW++ + Sbjct: 357 DAIERQLAHVPENAVRAAYNRAEYIDERRKMMLWWSEYL 395 >UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root RepID=A1BGX1_CHLPD Length = 419 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 145/404 (35%), Positives = 225/404 (55%), Gaps = 9/404 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++ PL+D ++ AKP + DY+L DG GL LL+ +SG KLW+F+Y R KQ+ + Sbjct: 1 MPKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQY-RFDGKQKL-LAL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++ARK R E++ LLA + DP E +K + ++F LVA W+ Sbjct: 59 GQYPEISLANARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDP 118 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + +A + LE+D+FPAIG ++EI A + + ++ARGA+ET R+ + Sbjct: 119 VWSPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQ 178 Query: 181 VMIYAQNTGLIDAVPSVNIG--KAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRC 237 V YA TG ++ PS + + F K + ++ +I P +L L+ + + + Sbjct: 179 VFRYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKS 238 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 L RP E W +IDF + W IPA RMKM + H VPLS +L+IL+ + P Sbjct: 239 ALQLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHP 298 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEE-GFPPD 355 +G ++F R ++PM++ ++NAAL+ G + HG R+ A T L+E GF D Sbjct: 299 ATGHGRYVFTGR--GSRPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVD 356 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 +IE LAH ++ RAYNR+ +L+ RR MMQ WAD + + +G Sbjct: 357 LIEHQLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAG 400 >UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV41_9DELT Length = 401 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 147/396 (37%), Positives = 214/396 (54%), Gaps = 5/396 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K LTDT I+ AKPK+ Y++ D GL +L+ G KLW+ +Y R K+R + G YPA Sbjct: 3 KKLTDTAIRTAKPKEKPYKMADSGGLYVLVNPGGGKLWRLKY-RFEGKERL-FAIGTYPA 60 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL +AR +K ++A+ +DP +K A++ TF +VA W K T + Sbjct: 61 VSLKEARARAVTAKEMIARGVDPCAARKAAK-AEAIARSRTFEVVAREWHKKKLAGWTPN 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A I R LE FP +G I E+ A + + V+ +G LET RRL Q +V YA Sbjct: 120 HARQIIRRLETLAFPDLGSRPIAELGAPDFLAVLGKVERQGHLETARRLAQICGQVTRYA 179 Query: 186 QNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 + G+I A P+ ++ +A KP + + P ++ L+ + +S Sbjct: 180 RLAGMIVADPASHLTEALTTKPVRLHAAITEPREIGALLRAIDDYPGDVSVSFALKIMPY 239 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 R +E A W EID + +EW IPA RMKM R H VPL+ + + + ++G RE Sbjct: 240 VFVRSSELRRATWAEIDLDRAEWLIPAERMKMRRPHLVPLARQVVGMFRALHAITGNREL 299 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 +FP + ++ + AL+R G G + HG RS+AST LNE G+ PDVIEA LAH Sbjct: 300 VFPGTASVTRCISDVGLLNALRRLGYGRDEMTVHGFRSMASTRLNEMGYRPDVIEAQLAH 359 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 ++N VR AYNR+ Y+E+RR MMQ WAD + + G Sbjct: 360 AERNSVRDAYNRAQYVEERRRMMQEWADYLDSLRDG 395 >UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacteria RepID=B0RRY6_XANCB Length = 409 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 148/390 (37%), Positives = 209/390 (53%), Gaps = 10/390 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDT I+ AKP +L DG+GL LL++ G++ W++ Y RP+T +R SFG YP V Sbjct: 2 PLTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPEV 61 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL+DAR+ AE++ L+A IDP E +K + A N+F +VA W+ ++ + Y Sbjct: 62 SLADARERLAEARRLVAAKIDPGEQRKAVKAAGEAAAANSFEVVAREWFAKQQKEWSPQY 121 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A+ I R L+ DIFP IG I I A L+K ++ ++ RGA+ET R Q V YA Sbjct: 122 AEKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYAV 181 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS---TRCLFMWQL 243 TG +A P+ + A ++MP + +R IS S R Sbjct: 182 RTGRAEADPTGALKGALTP--WRSMPFAAATTSEEATTVLRKIDISTSRPVVRSALRLAP 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 L RP E RW E+D +A +W+ + K R H LS A+ IL + PL+G E Sbjct: 240 LLFARPGELVRMRWTELDLDAGQWRYFVTKTK--RTHIAALSTQAIEILRDLHPLTGRGE 297 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS-HGLRSIASTALNEEG-FPPDVIEAAL 361 F+FP P + M+ + A +R G+ + HG R +AST LNE G + PD IE+AL Sbjct: 298 FVFPGGRDPRKHMSGNAILVAARRCGIEKDESTIHGFRHMASTLLNEMGHWNPDAIESAL 357 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 H VR YN++ YL++RR MMQ WAD Sbjct: 358 TH-KMPGVRGIYNQAQYLDERRKMMQSWAD 386 >UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWC6_JANMA Length = 414 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 212/405 (52%), Gaps = 10/405 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + PLTD IKAAKPK+ YQL DG+G+ L I SGSK+W+ Y + T+ +F Sbjct: 1 MPKLATPLTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTF 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAV L++AR+ RA++K + + +DP + ++ + S A NTF VA W K Sbjct: 61 GHYPAVGLAEARRKRADTKKQIVEGVDPAQARRVEKAISATAAANTFEAVARMWHQNKLE 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 A++I R LE+D+FP IG I E+KA ++ ++ ++ RGA E RR Q ++ Sbjct: 121 QWQPRTANNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLRQIEKRGAAEIARRNAQVCSQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISM--STRCL 238 + YA G+ + P + A + K +I +LP+ + T+ M TR L Sbjct: 181 IFRYAIACGIAENDPVPALRGALKPRIKGVHAAILVAELPEFLETLNHNKARMFPVTRIL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR--------DHTVPLSDGALA 290 +LT R +E E W E+D +W IP RMKM + DH V L A Sbjct: 241 MQLMMLTFVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWA 300 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 L ++ +GG +++FP++ P +P+++ + AALKR G G HG RS+A L Sbjct: 301 FLRELRTYTGGNQWLFPNQRDPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTL 360 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 G IE LAH +Y+R +LE+R+ MMQ +AD + A Sbjct: 361 GNDISNIERQLAHSSGEAYGASYDRESFLEERKIMMQGYADYIDA 405 >UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaproteobacteria RepID=Q167M4_ROSDO Length = 409 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 145/391 (37%), Positives = 213/391 (54%), Gaps = 13/391 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL+D +I+ K +D Y++ D D L +L+K +GSKLWQ +Y L + S GAYPAV Sbjct: 16 PLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYR--LDGREKTLSIGAYPAV 73 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK----KTSV 122 SL ARK R ++ ++A DP E ++EQ R +EA TF + + + + K+ Sbjct: 74 SLQQARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKA 133 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 T D + D G IT I A +++ ++ V+A+G ET RL RI V Sbjct: 134 TLDKTAYHLKLANHDF----GKKPITAITAPMILRTLRKVEAKGNYETAHRLRARIGSVF 189 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMW 241 YA +GL + P+ + A +P +++ +I P L+ + ++TR Sbjct: 190 RYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQVTTRIALQL 249 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP E A+W E D W IPA +MKM RDH VPL+D A+ +L ++PL+G Sbjct: 250 LALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGE 309 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEEG-FPPDVIEA 359 E++FPS ++PM+ T+NAAL+R G G + +HG R+ ST NE G + PD IE Sbjct: 310 SEYLFPSLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIER 369 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 ALAH ++NEVRRAY R + E+R + WWA Sbjct: 370 ALAHEERNEVRRAYARGAHWEERVKLSDWWA 400 >UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4I9_9PROT Length = 410 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 145/406 (35%), Positives = 217/406 (53%), Gaps = 12/406 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ +K AKPKD Y+L DG GL LL++ +G K W+ Y R KQ+T + G YP +S Sbjct: 3 LTELAVKNAKPKDKPYKLSDGGGLFLLVQINGGKYWRLAY-RFADKQKT-LALGIYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR+ R +++ LLA D DP +KE R Q A N+F +A+ VK TE +A Sbjct: 61 LADARERREQARKLLANDTDPSAIKKETKRILQTATVNSFSALAKELHKVKAPMWTEGHA 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++E+ FP IGD + EI+ LV ++ V+A+G ET RL Q I+ YA Sbjct: 121 KQWMLNMEKYAFPVIGDRPVAEIEPLELVGIMRNVEAQGTFETRDRLLQTISSTFKYAIA 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM----RTASISMSTRCLFMWQL 243 G P+ ++P+ +N + D++P + +S+ F L Sbjct: 181 IGKAKYNPAEIRLALADRPKVENFACLSTDEIPAFLRAFDDYQERGKVSLIAVAAFRLLL 240 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPA------ARMKMNRDHTVPLSDGALAILEMMKP 297 LT TR +E ++W + D +A W IPA + + H VPLSD A+A+L + P Sbjct: 241 LTATRSSEVRFSKWADFDLDAGCWIIPAEQTGRKGKHGKRKPHAVPLSDQAIAVLRDLYP 300 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 ++G E +FPSR + ++ TVN ++ G G HG RS+A T L + G +V+ Sbjct: 301 VTGHGEHVFPSRNGMGRVISENTVNKIIETMGYKGRQTGHGFRSLARTTLGDMGHRWEVL 360 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 EA L+H +N+ AY R+ Y E+RR +MQ WAD + A SG+ V+ Sbjct: 361 EAMLSHALENQTAAAYVRTTYFEERRGIMQKWADYLDAVKSGAQVI 406 >UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL52_9BACT Length = 378 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 211/387 (54%), Gaps = 21/387 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ EIK A P++ Y + D +GL L I +G K W+ R+ + K + G YP +S Sbjct: 3 LTNVEIKRATPREKRYTMRDSEGLWLEITPAGKKTWKVRF--KAQGREIKHTLGRYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV-TEDY 126 L +AR R E ++ L N + TF +AE W+ + V T + Sbjct: 61 LKEARLKRDEIRLELV--------------NHKSVPEGTFKALAEEWFERQVVPVRTHGH 106 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A I L+R I P +GD +I A L+ ++ ++ +G +ET R+ Q + +V+ Y Sbjct: 107 ARTIRSRLDRLILPYLGDKPPADIDAPELLAILRRIEDQGHVETAHRVSQIVGQVLRYGI 166 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG + ++ A + ++ P++ P ++ LM ++ S S+ RC ++Q+ T Sbjct: 167 ATGQARHDITADLKGALIPRKPEHFPTLTDPKKIGGLMRAIQAFSGSVVVRCAMLFQIYT 226 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E +A W EID + WKIPA RMK R H VPLS A+ +LE ++PL+GG E I Sbjct: 227 AVRPGEMRKAEWKEIDGDL--WKIPAERMKKRRPHLVPLSSQAIGVLEEIRPLTGGGELI 284 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 FPS +P++ TVNAAL+R G L HG R++ ST NE +P +VIE LAHV Sbjct: 285 FPSVRSKTRPISDMTVNAALRRMGYAQNELTGHGFRAMFSTIANECQWPSNVIELQLAHV 344 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWAD 391 DKN VR AYN ++ L++RR ++QWW D Sbjct: 345 DKNSVRAAYNHAELLDKRRELLQWWGD 371 >UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae RepID=B9Z434_9NEIS Length = 395 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 210/387 (54%), Gaps = 1/387 (0%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL+D +I+ +KP D Y+L DG GL L I+ +G+K W++RY+ TK + G YP V Sbjct: 2 PLSDVKIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPTKDGI-YTIGEYPDV 60 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL++AR R + L+ + +P +K SQ+ T +VAE W V +E Y Sbjct: 61 SLAEARAERERVRALVKEGKNPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSETY 120 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + L+RD+ G++ I E+ + L+ A+ + RGA R + Q + +A Sbjct: 121 RKQVEKHLQRDLLDEYGELPIREVTSAQLLAAISKIDERGAPSIARLVRQWAGSIFRHAI 180 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T D+ P+ + A P ++ + D+LP + + TR Q+LT+ Sbjct: 181 ATLRADSDPTYPLRGALRMPPTRHNAHLSADELPGFLKALDAYKGFGLTRLAVNLQMLTL 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R E A W E D +A+EW+IP +MKM H VPL A+AI+ ++PL+G R ++F Sbjct: 241 VRTQELRLAEWAEFDLDAAEWRIPPEKMKMRDPHIVPLPKQAVAIMRELEPLTGRRRWVF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P+ + M + T+ ++ G G HG R+ AST L+E+G+ D+IE LAH+++ Sbjct: 301 PNVRNHDTGMTNTTILRVIEILGYKGRATGHGFRATASTILHEQGWNTDIIERQLAHLER 360 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 N+V+ AYN + YL++RR M+Q WAD + Sbjct: 361 NKVKAAYNHAGYLKERREMLQAWADYL 387 >UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SUB2_ACILW Length = 396 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 218/395 (55%), Gaps = 27/395 (6%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDTE + A+PKD Y+L D GL+L+I + G K W R + +R +S G YP + Sbjct: 18 PLTDTECRKAQPKDKQYRLSDLHGLSLIITTKGQKYWNVRV--TVHGERKSESLGPYPDL 75 Query: 67 SLSDARKLRAE-----SKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS 121 SL AR+L E S+ +L +D+ P F VAE W+N +K + Sbjct: 76 SLKKARELAYELKHRYSRSVLHEDLKP-----------------YFEEVAEDWFNNQKET 118 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 + + ++ SL+ +++ A+ + I +I+A +++ ++ ++ARG+LE +R R V Sbjct: 119 WSSKHISNVRASLD-ELYIALANKRINQIQAPEILQIIKKIEARGSLEIAKRTLSRCGMV 177 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 M YA G P+ ++ A + + KN+ S+ ++P+ + ++ T + Sbjct: 178 MKYAIAHGYRYDNPAGDLVYALKNKRVKNLASLSASEMPEFLRRIKAYPADAQTHHAIVL 237 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +LT R +E +ARW+E D +W IP RMK H VPL+D +A L+ ++ L+ Sbjct: 238 IMLTGVRVSELLQARWEEFDLEGRKWDIPEERMKNRLSHRVPLTDMMIAELQALR-LTHN 296 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAA 360 +E +FP R+ +PM S+++ A +KR+G G + +HG RS+ ST +NE F PD IE Sbjct: 297 QELLFPHRLNNKEPMRSESILAVIKRSGYAGRMTTHGFRSLFSTVVNESNLFNPDAIERQ 356 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 LAHV +N +R AYNR+ Y ++R +MQW+ + V+ Sbjct: 357 LAHVPQNRIRSAYNRAQYWDERVRLMQWYGEQVEG 391 >UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae RepID=Q8VQN9_ECOLX Length = 421 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 146/406 (35%), Positives = 227/406 (55%), Gaps = 25/406 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+AAKP D Y+L DG G+ LL+ +GS+ W+ RY R L K++T + G YP VS Sbjct: 3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKT-LALGVYPEVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQ--KEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 LS+AR R E++ L+++ IDP E + K+ V + Q +F +A RW + + Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQL----SFEHIARRW-HASNKQWAQS 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 ++D + +SLE +FP IG+ IT + L+ V+ +A+ E RL QRI+ VM YA Sbjct: 116 HSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 +G+I P++++ A ++++ P++ +LP+L+ + + TR M LL Sbjct: 176 VQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLV 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARM------------KMNRDHTVPLSDGALAILE 293 R +E ARW EID + + W IPA R KM H VPLS A+AIL Sbjct: 236 FIRSSELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILT 295 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG 351 ++ +G IF P +P++ TVN AL+ G + HG R++A +AL E G Sbjct: 296 ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESG 355 Query: 352 -FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKA 395 + D E ++H ++N VR AY +++++LE+RR M+QWWAD + A Sbjct: 356 LWSRDAGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA 401 >UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K287_PSEFS Length = 401 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 136/397 (34%), Positives = 219/397 (55%), Gaps = 12/397 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL DT + AKP+D Y+LYD GL L ++ +G + W+ +Y R L K++ + + G YP V Sbjct: 2 PLKDTNCRNAKPQDKPYRLYDEQGLYLEVQPNGGRYWRLKY-RFLGKEK-RLALGVYPEV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 L +AR+ R +++V LA DP ++ SQ +TF VA +W N++++S +Y Sbjct: 60 GLQEARRKRDDARVQLASGQDPSLQRRMAKVVSQLDHQHTFESVATQWLNIRESSWDPEY 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + LE + FP +G + I+ I LV+ +Q + RGA ET RR+ Q ++ +A+ Sbjct: 120 TRTVRQRLELNAFPWLGKLPISSISTPMLVENLQRIIKRGARETARRVAQIYKQIFEFAE 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 G+ N+ + + K+ ++ P++L L+ + + + +M C L Sbjct: 180 AAGITPPNQIGNLSRTLPAKRVKHFAAVTDPEKLGALLKALDSYAGTMPVCCALKLAPLL 239 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARM------KMNR-DHTVPLSDGALAILEMMKPL 298 RP + W E++ +A EW IP +M K +R DH VPLS A+A+L +KPL Sbjct: 240 FCRPGDLRHMEWSEVNLDAGEWLIPGHKMKGLTATKQDRPDHLVPLSQQAIAVLHELKPL 299 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEE-GFPPDV 356 +G + FPS ++PM++ V +AL+R + G + HG R+ A T E GF PD+ Sbjct: 300 TGRHRYAFPSARGGDRPMSNNAVLSALRRMDISGDEMTGHGFRATARTIGAEVLGFRPDL 359 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 +E LAH KN + RAY+R+ +L +RR MMQ WAD + Sbjct: 360 LEHQLAHTVKNPLGRAYDRTSFLPERREMMQIWADFL 396 >UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola DG893 RepID=A6F4S5_9ALTE Length = 437 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 209/391 (53%), Gaps = 8/391 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 +TDT+ + AK KD Y+L D GL L I+ SGSK W++RY L + + G YP ++ Sbjct: 2 ITDTKARKAKAKDTTYRLADSGGLALEIRPSGSKFWRYRYR--LHGKAGMYTVGEYPTIT 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 +S+AR +R +K +A P E +K ++ + + NT V + W K + Y Sbjct: 60 ISEARAIRDWAKKCVANGEAPAEVKKRELAERRAEQANTLEEVGKEWIARNKAGWSVYYH 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R LE DI+P +G I +I ++ +Q V+ R V L Q + + +A Sbjct: 120 RQVTRMLEADIWPNLGKKGIRDITPAQMLAELQRVEERAPTVAVN-LKQWLAAIYRHAIA 178 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM--RTASISMS-TRCLFMWQLL 244 T D P+ + A +KP+ K+ PS D+ +L + + +I+ T L Sbjct: 179 TLRADNDPTAPLRGAIKKPKAKHKPSYNLDEFGKLCRAIWPKEGAIAYRITEIAIRLLAL 238 Query: 245 TITRPAEAAEARWDEIDFNASE--WKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 T+ R E ARWD+ D + E W IP +MK H VPLS A+ +L ++ L+G R Sbjct: 239 TMARTVEVRSARWDQFDLESEEPTWTIPGEKMKRGVTHLVPLSSQAVELLRELEGLTGNR 298 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 + FP+ +P +PM++ T+N L+R G GG+ H R+ AST LN GF D +E LA Sbjct: 299 PYCFPNLRQPTEPMSATTINRVLERLGYGGLFSGHAFRTTASTLLNNYGFDGDWVERQLA 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 H ++N+ R +YN ++YL QRR M+QWWADLV Sbjct: 359 HTEENKSRASYNHAEYLYQRRIMLQWWADLV 389 >UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5EXV7_DICNV Length = 401 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 155/396 (39%), Positives = 214/396 (54%), Gaps = 21/396 (5%) Query: 8 LTDTEIKAAK-PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTD I+ AK P +L DGDGL+L I GS W FRYY + + S G YPA+ Sbjct: 12 LTDKIIQTAKKPSRGYLRLTDGDGLSLKITDRGSYFWNFRYY--INGRERNMSLGRYPAM 69 Query: 67 SLSDARKLRAESKVLLAKDIDP-QEHQKEQVRNSQEAKTN--TFLLVAERWWNVKKTS-V 122 S+ AR E + L + +DP E +K+Q E KT TF VA W+ +K+ Sbjct: 70 SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK 129 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 E +A + +LE+ +FP IG I+ I L+K ++ + R ET R+ QRI V Sbjct: 130 NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF 187 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS---ISMSTRCLF 239 YA T + P++ + K F K PS+ +L + T +++ R L Sbjct: 188 DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPKTALALRLL- 245 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT+TR E +W E+ N EW IPA RMKMNR H VPLSD AL IL+ ++ L Sbjct: 246 ---ILTMTRSGELRFGQWQELQGN--EWHIPAERMKMNRPHIVPLSDWALEILDELRSLR 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIE 358 F + + N P++ T++ A+KR G G V HG R+ ASTA+NE G + PD IE Sbjct: 301 RNNSPYFVTGNR-NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE 359 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 LAH D+N VR AYNR++YLE+R MMQWWAD ++ Sbjct: 360 RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIR 395 >UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGW9_DIAST Length = 428 Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 142/419 (33%), Positives = 217/419 (51%), Gaps = 25/419 (5%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKL-WQFRYYRPLTKQRTKQSFGAY 63 T L+DT I++ KP D QL DG+GL LL+ +G K W+F Y + +R S G Y Sbjct: 3 TMALSDTTIRSVKPGDPRRQLTDGNGLYLLLYVNGGKHGWRFDY--KVQGKRKTISLGTY 60 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQE------------HQKEQVRNSQEAKTNTFLLVA 111 PA SLS AR ++ L+A IDP H+ ++ + + TF VA Sbjct: 61 PATSLSLARAKANAARELVAAGIDPSADRKSKKAAEKKVHEDAKLVAAGKPLNGTFEAVA 120 Query: 112 ERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV 171 W+ V+ YA+ + R LE D+FP IG + ++ A L+ ++ ++ RG +ET Sbjct: 121 REWFEVRSPEWAAKYAEKVLRRLEADVFPHIGIRPVGDVTAPELLAVLRRIEDRGVIETA 180 Query: 172 RRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTAS 230 R + +++ +A GL + ++ KP+ ++ P+I P +L +L+ Sbjct: 181 HRAHESCSQIFRFAVGAGLAKGDVARDLKGLLRKPRTRHFPAILCPKRLGELLRACDGYV 240 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD-------HTVP 283 + R + + RP E ARWDEI+ N + W IP RMK R+ H VP Sbjct: 241 GTHVVRAALSLAPMLLLRPGELRHARWDEINLNTATWTIPGERMKREREGKLNGMPHIVP 300 Query: 284 LSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS-HGLRSI 342 L A+ +L + P++G E +F ++PM+ TVNAAL+ G G V+ HG R+ Sbjct: 301 LPRQAVQVLRELHPITGRGELVFRGERHHHRPMSENTVNAALRAMGFGADEVTGHGFRAT 360 Query: 343 ASTALNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 A T L+E G ++IEA LAH K+ + RAYNR++YL QRR MMQ WA+ ++A G+ Sbjct: 361 ARTLLDERLGIASEIIEAQLAHSVKDSLGRAYNRTEYLVQRRKMMQQWANYLEALRRGN 419 >UniRef50_C0N6F7 Site-specific recombinase, phage integrase family protein n=2 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F7_9GAMM Length = 401 Score = 233 bits (594), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 137/397 (34%), Positives = 215/397 (54%), Gaps = 14/397 (3%) Query: 7 PLTDTEIKAAKP--------KDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 PLTD +IK KP + Y++ D GL + + GSK W++++Y T++ K Sbjct: 2 PLTDKQIKNLKPGIRPDKSETNKPYKVSDSHGLYIEVPLKGSKRWRYKFYFEGTER--KL 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 S G YP +SL +AR+ R + + + IDP +++ + R + NT+ VA W Sbjct: 60 SLGTYPKISLKEARQKRDDIRKKIDAGIDPS-YERRKKRLNASVSGNTYEEVAREWHARN 118 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 K + T+ YAD LE++ FP IGD I +I A L+ ++ V RGA+ET R+ + Sbjct: 119 KANWTKKYADLTLSRLEQNAFPWIGDRQIDKITAPELLTVIKRVFDRGAIETAHRIRRLS 178 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRC 237 N + +A G+ + P+ + AF + K+ ++ P ++ +L+ + S +TRC Sbjct: 179 NTIFKFAIANGMTETNPAAALEGAFPTQKVKHHSAVTEPKKVAELLRAIDGYSGHFATRC 238 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 L + RP A W +ID S W+I RMK R H +PLS AL ILE ++P Sbjct: 239 ALKLSALVMNRPINIRAAEWGDIDLENSVWRIHMGRMKSRRTHIIPLSRQALEILEEIRP 298 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS-HGLRSIASTALNEEGFPPDV 356 L+G +++FP +PM+ T+ AAL+R G G +S HG R +AST L+E+G+ D Sbjct: 299 LTGEGKYVFPCMRSKARPMSENTICAALRRMGFSGEEMSAHGFRGMASTLLHEKGYNSDW 358 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 +E LAH+D + R AYN + +L+ R M+Q WAD + Sbjct: 359 VERQLAHID-SSTRSAYNHAQHLDDRAKMLQEWADYL 394 >UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli RepID=Q93UI5_ECOLX Length = 401 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 211/403 (52%), Gaps = 17/403 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD ++++ + DG G+ L I +SG + W+ +Y R K++ +FG YP V Sbjct: 2 PLTDLKVRSLTTPG---RYADGGGMYLQITASGGRYWRMKY-RHGGKEKL-LAFGVYPLV 56 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 + +AR +K L++ DP +K +++ NTF VAE W + + Sbjct: 57 GIKEARDKLFYAKQALSRGEDPGATKKLAKFQAEQDAANTFKAVAEDWLDHQAGRWEAIT 116 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA- 185 SLE D++P +G + I+ I ++ V+ ++ RGA E R+ QRI + Y Sbjct: 117 LSRTRASLEADVYPTLGSLPISSITPRQVMDVVKKIEKRGASEIATRVLQRIKSIFRYGT 176 Query: 186 -----QNTGLIDAVPSVNIGKAFEKPQK-KNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 + + D VPS + KP++ ++ ++ P QLP+ + + + T Sbjct: 177 THQRIERNTMADLVPSEIL-----KPRRVQHRAALAPAQLPEFLKKLASYEGEPHTVNAL 231 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT RP E ARWDEID A W+IP RMKM +H VPLS A+A +E M+PLS Sbjct: 232 HLLMLTAARPGEVRGARWDEIDLKAKLWRIPPERMKMRSEHVVPLSSEAVAAIEAMRPLS 291 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 G R+ +FPS P++P++ T N+A+ R G + +HG R++ ST NE G+ D IE Sbjct: 292 GNRDLVFPSPFYPSKPLSENTFNSAMARMGYKYLATAHGFRALFSTVANESGWSADAIER 351 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 LAH ++N+VR AY+R L +R MM WWA + +G + Sbjct: 352 QLAHAERNQVRAAYDRGVRLPERVKMMNWWAQYLAERKAGKAI 394 >UniRef50_B0QT04 Prophage CP4-57-like integrase n=1 Tax=Haemophilus parasuis 29755 RepID=B0QT04_HAEPR Length = 304 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/275 (41%), Positives = 167/275 (60%), Gaps = 2/275 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTK--QRTKQ 58 MAR TKPLT+TE++ AKPKD DY L DG GL L +K++G K W F YY+P + +RT Sbjct: 1 MARITKPLTNTEVEKAKPKDKDYSLMDGQGLFLRVKANGKKFWLFNYYKPFSTPPKRTNL 60 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 GAYP +SL+ AR +R E + LLAK+IDP+ H++ V + NTF VA++W K Sbjct: 61 GIGAYPEISLAQARLIRDEWRALLAKNIDPKVHRQNIVDEEISKRENTFEAVAKKWREKK 120 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 V + W LE +F IG+++++EI ++KAV+P++ RG +T+ R+ + + Sbjct: 121 SLEVQPKTMEKNWARLENHLFSKIGNVAVSEITPKMVIKAVEPLKERGVGDTLHRVIRLL 180 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 NEV+ +A N GLI+ VN+ F +N P+IRP+ LP+ + + ++ S+ + L Sbjct: 181 NEVLNFAVNMGLIEFNKCVNVSANFSTHTAENNPTIRPELLPEFLSDLDDSNSSIQVKIL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR 273 WQLLT+ RP EA W EIDF W IPA + Sbjct: 241 IKWQLLTMVRPREAVSVEWQEIDFAKKTWTIPAPK 275 >UniRef50_A6QCY9 Site-specific recombinase, phage integrase family n=2 Tax=Proteobacteria RepID=A6QCY9_SULNB Length = 409 Score = 230 bits (587), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 142/402 (35%), Positives = 220/402 (54%), Gaps = 11/402 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR T PLTD EIKAAKPK+ +Y+L+DG GL L I G K W+ +Y ++R S Sbjct: 1 MARITNPLTDKEIKAAKPKEKEYKLFDGGGLYLSITPKGQKWWRLKYRFDGKEKRI--SL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDP---QEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 G YP SL DAR+ R + K +AK IDP ++ +KE V+ NTF + W + Sbjct: 59 GVYPNTSLQDARQQREDFKTQIAKGIDPSRERKEKKEAVKAEVFKSRNTFKSICLEWIEL 118 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR---L 174 ++ + E R+LE+D + +GD S+ +I H L+ Q +Q RGA+ET R L Sbjct: 119 QRPQMAEATLSKYERTLEKDFYAPLGDKSMNDITRHDLITIAQVIQDRGAVETAHRSLGL 178 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISM 233 C RI + G + V ++ + K+ +I + ++ +LM+ + + Sbjct: 179 CNRIWRYALQFDKVGH-NIVSDISKKDVLRSYKNKSFKTITDEVRIGELMNAIDNYTGEF 237 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 +T+ LT RP A W E D W IPA +MKM ++H +PL+ A+ IL+ Sbjct: 238 TTKSALRLLPLTFVRPHNIRYAEWSEFDLENGIWTIPAEKMKMKKEHKLPLAPQAVKILK 297 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-F 352 + P + +++F S I + ++ T+N ALKR GG +VSHG R++ ST E G F Sbjct: 298 EIYPYTNDAKYVFHSPISRLKAISENTLNMALKRLDFGGEIVSHGFRAMFSTLAYESGKF 357 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 +VIE LAH + N+V++AYNR+ Y ++R +++W+AD ++ Sbjct: 358 RSEVIEDLLAHQEANQVKKAYNRAAYDAEKREIVEWYADYLE 399 >UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea psychrophila RepID=Q6AR70_DESPS Length = 399 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 208/377 (55%), Gaps = 11/377 (2%) Query: 24 QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLA 83 +L DG GL+ + SG K W +RY L ++ G YP +SL ARK+ E++ L+ Sbjct: 17 RLSDGLGLSFEVTKSGVKRWLYRYR--LDDKQQMCVLGRYPELSLEQARKIHREARALVR 74 Query: 84 KDIDP---QEHQKEQVRNSQEA----KTNTFLLVAERWWNVKKTSVTEDYADDIWRSLER 136 + +P + +K++V + ++A ++ +F +A W K S + + + SL Sbjct: 75 EGCNPARERRRKKQEVISKEKAERDDRSKSFEYIALEWIENNKESWSPSHQQAVLASLRN 134 Query: 137 DIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPS 196 ++F A G+ + I +++ ++ ++ RG+LE VR++ QR N V YA TG P+ Sbjct: 135 NVFSAFGNTPVDTITPPDVLRTIRAIENRGSLEIVRKVLQRTNAVFRYAIQTGRATYNPA 194 Query: 197 VNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRT-ASISMSTRCLFMWQLLTITRPAEAAEA 255 ++ A + ++MP++ +L QL+ + + I ++T+ + LT R E A Sbjct: 195 ADMQGALKAKTVEHMPAVFDSELAQLLQDISSNQKIHVTTKLAIQFTALTACRGGEVRNA 254 Query: 256 RWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQP 315 RW E++ + +EW IPA RMKM R H VPLS ALAIL L G F+FPS ++P Sbjct: 255 RWQEVNLDTNEWHIPAERMKMRRAHIVPLSIQALAILHRAGALWGEDGFVFPSIRDRSKP 314 Query: 316 MNSQTVNAALKRAGLGGVLVSHGLR-SIASTALNEEGFPPDVIEAALAHVDKNEVRRAYN 374 M+ + A + G G HG R S +S A + GF +VIE +LAH +KN+V+ AYN Sbjct: 315 MSDNAMGKAFRDMGYRGKATPHGFRSSFSSMAHEQSGFASEVIEKSLAHEEKNKVKGAYN 374 Query: 375 RSDYLEQRRPMMQWWAD 391 R++YLEQRR ++QWW + Sbjct: 375 RAEYLEQRRELLQWWGE 391 >UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2J0_9DELT Length = 420 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/407 (34%), Positives = 206/407 (50%), Gaps = 17/407 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTK--QRTKQSFGAYPA 65 LTD +++ K +D +L+DG GL L + SG K W+F+Y P Q + S G YP Sbjct: 3 LTDAQVRNVKAEDKTRRLFDGGGLYLEVAPSGGKWWRFKYRFPGQGKIQEKRLSLGTYPG 62 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L +AR R E + +A+ IDP + + R S A +F VA W T Sbjct: 63 VGLKEARAKRDEMRRQIAQGIDP-ANLRRSTRGSG-ALAGSFEAVARLWHRNNSTDWAPS 120 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 ++ + R LE +FP +G+ + +I A L+ ++ ++ G ET RR+ +V YA Sbjct: 121 HSTRLIRRLEAHVFPYLGNRPVGDITAPDLMNVLERIKNSGHTETARRIQTICGQVFRYA 180 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 G + PS + K KNM +I P ++ +L+ + + RC L Sbjct: 181 VQKGFAEYDPSSALKGCLGKTTAKNMATITEPAEVGRLLQAIDEYPGTQVVRCALQLAPL 240 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD----------HTVPLSDGALAILEM 294 R E ARWDE D EWKIP RMKM +D H VPL+ A+ ILE Sbjct: 241 FFVRSGELRNARWDEFDLVNREWKIPVERMKMRQDEKRARQGQVGHIVPLATQAVKILEE 300 Query: 295 -MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGF 352 ++PL+G +FP ++ ++ T+ AL+R G G + HGLR +AST L+ GF Sbjct: 301 ELRPLTGRCALVFPGLRSRDRAISDATLTNALRRMGYTGDEMTIHGLRHMASTLLHGLGF 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 VIE LAH D+N +R YN++DYLE+RR MMQ WAD + +G Sbjct: 361 QSLVIERQLAHKDRNRIRGVYNQADYLEERRRMMQSWADYLGQLKAG 407 >UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JWM6_PASHA Length = 404 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 225/413 (54%), Gaps = 25/413 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQR-TKQS 59 M KPL+DT +K K + D +GL +L + +K+W + Y P T +R TK Sbjct: 1 MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKK-AKVWIYSYISPKTGKRSTKNR 59 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW--WNV 117 G+YP +SL++AR R E L+ + +DP EH + R ++E K + A +W W + Sbjct: 60 IGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKE-KQESIQSFAYKWADWKL 118 Query: 118 KKTSVTEDYADDIWRSLERDIFP-----AIGDISITE-IKAHTLVKAVQPVQARGALETV 171 K + + LE +FP + D ++T+ I T + + P +T+ Sbjct: 119 SKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRLTDLDRIMP-------DTL 171 Query: 172 RRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASI 231 R+ + E++ YA G I+ P I KAF + P+I P++L + M ++ ++ Sbjct: 172 HRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEELAEFMQDLQKSNR 231 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD-HTVPLSDGALA 290 + + L WQLL I RP EA +W +ID+ IPA RMK ++ H+VPL+ A+A Sbjct: 232 TPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKGGKNPHSVPLTKQAIA 291 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTAL 347 ILE MK +G + IF R N+P NSQTVN A+KR G G+LV+HGLRSIAST L Sbjct: 292 ILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKYKGLLVAHGLRSIASTYL 351 Query: 348 NEEGFPPD--VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +E F + VIEA L+H +K+ V AY+R ++L++RR +MQ WAD V+ S Sbjct: 352 HER-FTTETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQEWADFVEQCKS 403 >UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadaceae RepID=B1JDS4_PSEPW Length = 402 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 136/397 (34%), Positives = 212/397 (53%), Gaps = 5/397 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I+ A+P+D Y++ D GL L + ++G KLW+ RY + G YP+V+ Sbjct: 3 LTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYR--FEGKAKMLGLGTYPSVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ R ++ LL++ IDP +++++ ++ T +A W++ + A Sbjct: 61 LAHARERRDAARKLLSQGIDPSAYKQQEKAAAEAQAL-TLETLAREWYDYNQPRWAPATA 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + LE DIFP IG E++ LV V+ ++ R A R++ Q ++++ + Sbjct: 120 SKALQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAFNVARKVRQWLSQIFRFGLA 179 Query: 188 TGLIDAVPSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G++ P+ ++ A P+ ++ P + +LP+L+ + A +++ LLT Sbjct: 180 KGVVAGNPATDLDVVAAHAPRTRHHPHVSEAELPELLEKLEAAQCDFTSKIAIRLLLLTA 239 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E A WDE D ++ W IPAARMK R H VPL A+ +L + L+G F Sbjct: 240 VRPGELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTGTYPLAF 299 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P R ++PM+ TVN AL G G HG R + ST+LN G+ D IE LAH D+ Sbjct: 300 PGRNDRSRPMSENTVNKALSTMGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQ 359 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKA-ADSGSIV 402 + +R YN + YLEQRR MMQ WAD V A A+ S+V Sbjct: 360 DSIRDTYNHAHYLEQRREMMQTWADHVDALAEQTSVV 396 >UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A1WW57_HALHL Length = 412 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 137/398 (34%), Positives = 213/398 (53%), Gaps = 8/398 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQL--YDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M R T LTD + + AKP + QL DG GL LL+KS+G K WQFRY RP ++ T Sbjct: 1 MGRGTNKLTDRQCRTAKPPEGKQQLKLTDGGGLVLLVKSNGGKQWQFRYRRPSGREAT-M 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-V 117 G YP V LS AR+ R E++ LLA IDP + +K Q + A T++F VA WW+ V Sbjct: 60 GLGVYPDVPLSKARERRDEARALLADGIDPIDQRKAQRSAAASADTHSFEAVAREWWDAV 119 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + V +A+ R LE+ FP +G ++ I+ +++A++ ++A +ET R+ Sbjct: 120 HRHKVVASHANRNLRRLEQYAFPKLGRRPVSAIEPPDVLEALRRIEALEHVETAHRVKTL 179 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTR 236 I +V YA TG P+ ++ P+ +++P+I P +L L+ + +TR Sbjct: 180 IGQVCRYAIATGRGSRDPTADLRGMLRSPKTRHLPAITEPAELGPLLRAIDGYRGQPTTR 239 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + RP E A W D ++ W + K PL A++IL ++ Sbjct: 240 AALQLAPIVFCRPGELRAAEWQAFDLSSGTWDYQPS--KDGDPLVTPLPRQAISILRELE 297 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPD 355 P+S ++FPS P++P++ T+ AALKR GG +V+HG R+ A T L E G+ + Sbjct: 298 PISRSSRYLFPSGRTPDRPISDNTLTAALKRLDYGGRMVAHGFRAAARTILVERLGWGIE 357 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 ++E L H ++ RAYNR+ ++EQR M+Q WAD + Sbjct: 358 IVEMQLGHRVRDAHGRAYNRTQWIEQRGVMLQQWADYL 395 >UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BVL9_9GAMM Length = 441 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 134/420 (31%), Positives = 220/420 (52%), Gaps = 22/420 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+KT PL+D++ AKP++ DY LYDG GL L I+ SGSK+W+F+Y R K + Sbjct: 1 MAKKTIPLSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRANGKDGL-MTL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +PA+SL AR R E + LLA IDP E+ +++ ++ F +A W K Sbjct: 60 GNFPALSLKTARDKRRELETLLANGIDPIEYS--EIQKAKLDNKYNFESIAREWHTAYKN 117 Query: 121 SV--TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + + A+ +++E +FP +G I IK L++ ++ ++ G E V++ QR+ Sbjct: 118 TGRWGTETAERALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRL 177 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQK-KNMPSIRPDQLPQLMHTMRTASISMSTRC 237 + +A + G I++ P+ + F +K K+ P + ++LP+L + + + TR Sbjct: 178 TSIFAFAMSKGFIESNPAYGLQDIFILSKKTKHHPQLPLERLPELQAKLASDTGHPITRL 237 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLS 285 + L T R +E ARW E DF + W IP R KM H +PLS Sbjct: 238 CVEFALHTFARSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKTPHLIPLS 297 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIA 343 + ALAI++ + SG + +FP P+ M+ T+N L+R G + HG R +A Sbjct: 298 NQALAIIKEIYKYSGHTQNVFPKNGDPHGFMSESTINKTLRRLGYDTNTEVCGHGFRGMA 357 Query: 344 STAL-NEEGFPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSI 401 AL + F D +E ++H ++N VR AY +++++LE+R+ M+ WW+ + SI Sbjct: 358 CAALIQSKLFQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLDVTKETSI 417 >UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y106_LEPCP Length = 429 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 210/399 (52%), Gaps = 21/399 (5%) Query: 24 QLYDGDGLTLL-IKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLL 82 ++ DG GL LL + G+ W+ Y +R S G YP LS ARK AE++ L+ Sbjct: 28 RIGDGGGLYLLPLVKGGAHGWRLDYT--FNGKRKTLSLGTYPDTGLSLARKKAAEARTLV 85 Query: 83 AKDIDPQEHQK--EQVRNSQE--------------AKTNTFLLVAERWWNVKKTSVTEDY 126 A+ DP EH+K ++ R Q A+ + VA W + + TE Sbjct: 86 AEGTDPSEHRKGVKEERERQHLAGQEAAQRAAAGLAEPGSLEAVAADWLQHRAGAWTEGT 145 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 +I SL+R +FP +G + EI + VQ ++A GA ET R+ QR+ + YA Sbjct: 146 RHNIAGSLKRYVFPTLGRRPVGEIAPGEIRTCVQRIEASGAAETAGRVFQRLRALYRYAV 205 Query: 187 NTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 L+ A P+ + + F K+ P++ + P + + + R + +L Sbjct: 206 AHELVAADPTYPLKPSEIFRPRDTKHRPAMSAQEAPAFLRKLADYGGDPTVRNALLLLVL 265 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T RP E A W EID A+ W+IPAA MKM +H VPLS ALA+LE M+ L+G + Sbjct: 266 TAVRPGELRAAEWTEIDEAAALWRIPAAHMKMKAEHLVPLSVQALAVLEEMRALTGTQAL 325 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 IFPS P +P + T+N+AL R G G +HG+R++ ST+ NE G DVIE LAH Sbjct: 326 IFPSPFYPGRPFSENTMNSALARMGYKGEATAHGMRTLFSTSANEAGHRGDVIERQLAHE 385 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 ++++VR AYNR++Y+ +RR +M WW + V + G+ V+ Sbjct: 386 ERDDVRGAYNRAEYMAERRRLMTWWGERVDSMRRGAEVI 424 >UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHC8_THIDA Length = 425 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 144/405 (35%), Positives = 221/405 (54%), Gaps = 13/405 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT +K AKP D Y++ D GL LL+ +G K W+ Y R L K++T + G Y VS Sbjct: 19 LTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDY-RFLGKRKT-LALGVYSDVS 75 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-KTSVTEDY 126 L+ AR+ R +++ +LA DP E +KE R +Q A+ N+F VA W +K K T+ Sbjct: 76 LARARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQST 135 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 AD LE +FP +G + I +KA L+ ++ V+ RG T RL + ++ Y Sbjct: 136 ADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGV 195 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTAS-ISMSTRCLFMWQLL 244 TG + P+ ++ A KP+ + P+I + + +R A+ TR + LL Sbjct: 196 ATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFALL 255 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD---HTVPLSDGALAILEMMKPLSGG 301 T R E A+W+EID+ A EWK+PA RMK + HTVPLS ALA+L +K L+G Sbjct: 256 TFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGH 315 Query: 302 REFIFPSRIKP---NQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 ++FP ++K + ++ TV L + G G HG R+ A + L+E+G+ + +E Sbjct: 316 SPYLFP-KVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAME 374 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 L H + + AY RS++L +RR MMQ WAD A ++G+ ++ Sbjct: 375 RQLDHKETDSTVAAYARSEHLPERRNMMQAWADTCDALETGAEII 419 >UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriaceae RepID=Q0P7K9_ECOLX Length = 423 Score = 227 bits (578), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 136/403 (33%), Positives = 227/403 (56%), Gaps = 22/403 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D +I++ KP D +++ D GL LL+K GS+LW +Y + + ++ + GAYPAVS Sbjct: 3 LNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKY--RINGKESRIALGAYPAVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR+ R + +LA +I+P + Q+ R S+ + F VA W + KK +++ A Sbjct: 61 LSDARQQREGIRKMLALNINPAQ-QRAAERGSR-MQEKMFKSVALEWHSSKK-KWSQNTA 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + L R +FP IG + +TE+K+ ++ ++ ++ +G LE R Q ++ +M YA + Sbjct: 118 DRVLARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMRYAVH 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS-TRCLFMWQLLTI 246 GLI+ P+ N+ P +++ P++ ++LP+L+ + + TR + L Sbjct: 178 QGLIEINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW EI+F W IPA R KM H VPLS+ ++IL+ Sbjct: 238 IRSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKR 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG- 351 +K +SGG E +FP P +PM+ T+N AL++ G + HG R++A +AL E G Sbjct: 298 IKEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGL 357 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLV 393 + D +E ++H ++N VR AY ++++++E R MMQWW+D + Sbjct: 358 WSQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYL 400 >UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria RepID=C1D8D2_LARHH Length = 452 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 144/428 (33%), Positives = 219/428 (51%), Gaps = 34/428 (7%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLT IK KP+D Y+ DG GL LLI +GSK W+ Y R KQ+T + G Y Sbjct: 6 PLTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNY-RINGKQKT-LAIGVYCQF 63 Query: 67 SLSDAR-KLRAE---------------SKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLV 110 +L D + K RAE ++ +LAK IDP E ++E + + +F V Sbjct: 64 ALVDDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYV 123 Query: 111 AERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET 170 A W +A ++ LER IFP IG + EI+ ++ A++ V+A+ L+ Sbjct: 124 AREWHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDV 183 Query: 171 VRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS 230 RL Q + ++ YA TG ID P ++ A + + + P++ ++LP+L+ + A Sbjct: 184 TSRLRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAK 243 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNR 278 + TR LLT R +E ARW+EIDF+ + W IP R KM Sbjct: 244 LRPLTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRT 303 Query: 279 DHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVS 336 H VPL ALA+ + ++G E +F P +PM+ TVN ALKR G + Sbjct: 304 PHLVPLCQQALALFREVHAITGRFELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCG 363 Query: 337 HGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVK 394 HG R++A +AL+E G F + IE ++H +++ VR AY +++++L +RR MM WWAD + Sbjct: 364 HGFRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLD 423 Query: 395 AADSGSIV 402 A G+ + Sbjct: 424 AQREGTYI 431 >UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q072_9GAMM Length = 402 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/402 (33%), Positives = 217/402 (53%), Gaps = 17/402 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R+TKPLT TEI+ AKP+D Y+LYDG+GL L + SSG+K W +Y +P TK++ + Sbjct: 1 MPRQTKPLTTTEIEKAKPQDKPYRLYDGEGLLLNVASSGTKTWYLQYSKPFTKKKDMVNL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+L+DARK + + LL+KDIDP+ H +E+ R + F V E W KK Sbjct: 61 GRYPTVNLADARKQKNYCQELLSKDIDPKTHFEEEARRKEYEHRTDFKSVFEEWLPTKK- 119 Query: 121 SVTEDYADDIWRSLE---RDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 YA +E +++ IG+ + ++ ++ ++PV++ G L + ++ Sbjct: 120 -----YAPKTVEKMENYIKEMLAVIGNKPVNQVTTEDCMRVLKPVESAGHLTKLEKMRSM 174 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTR 236 +++ + YA TG P +++ F P+ + P+I + L +L+ ++ + +TR Sbjct: 175 MSQTIAYAIATGRAKENPCIHLRGVFMTPETTHAPAILDEAGLTRLVQSIYSYHGHFATR 234 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTV--PLSDGALAILEM 294 ++ ++ RP E +W +IDF + W+ + + + ++ PL A+ IL+ Sbjct: 235 KALLFAIIMFARPGEIRHLKWQDIDFEYNNWQYTPNKTRKSTGVSMMSPLPTQAVEILKE 294 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV-LVSHGLRSIASTALNEEGFP 353 MK E +FPS ++P++ T+N AL+R G S G R+IA T L EE F Sbjct: 295 MKAYKNA-ELVFPSSNSTSRPLSENTLNQALRRMGFENTEQTSQGFRAIARTVL-EEKFK 352 Query: 354 PDV--IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 D IE L H ++ RAYNR +L++RR MMQ WAD + Sbjct: 353 YDYRWIELQLGHQVRDSNGRAYNRVQWLDERREMMQKWADYL 394 >UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=C7SIL5_ECOLX Length = 420 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/406 (33%), Positives = 221/406 (54%), Gaps = 22/406 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ KP D +++ D GL LL+K GS+ W +Y + + ++ + GAYPAVS Sbjct: 3 LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPAVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR+ R + +LA +I+P + + + + K + +A W+ +++ A Sbjct: 61 LSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALA---WHKSNRKWSQNTA 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + SL IFP IG++ ++E+K + ++ ++ +G LE R Q ++ +M +A + Sbjct: 118 DRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVH 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS-TRCLFMWQLLTI 246 GLID P+ N+G P +++ P++ ++LP+L+ + TR + L Sbjct: 178 QGLIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRLAVLLMLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW EIDF W IPA R KM H VPLS+ ++AIL+ Sbjct: 238 IRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQ 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALNEEGF 352 +K ++G E IFP P +PM TVN AL+ G + HG R++A +AL E G Sbjct: 298 IKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGL 357 Query: 353 -PPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAA 396 D +E ++H ++N VR AY +++++LE R+ MMQWW+D ++A Sbjct: 358 WAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEAC 403 >UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7HXY0_THIIN Length = 392 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 143/388 (36%), Positives = 209/388 (53%), Gaps = 17/388 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT + AAKP++ Y+L DG GL L + +G K W+ Y KQRT+ ++G YPA++ Sbjct: 3 LTVKAVDAAKPQERPYKLTDGGGLYLFVAPTGLKSWRANYELN-GKQRTR-TYGRYPAMT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN-TFLLVAERWWNVKKTSVTED- 125 L+ AR+ ++K A E + AK TF + E+W +K S++ Sbjct: 61 LAQAREAHTQAKSTPA----------EAATVTPIAKVAPTFKAITEQWLKIKLPSLSNGK 110 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + + +LER +PAIG + I +I LV+ VQ VQ G +ET R+ RI V YA Sbjct: 111 HQGQVAGTLERFAYPAIGKLPIDQIPRTKLVEVVQAVQKGGRVETAHRVAGRIAAVFDYA 170 Query: 186 QNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 Q+ G I++ + + + + + KK M SI P + L+ + + TR L Sbjct: 171 QDVGYIESHGAAGLVRVLQPRKVKKPMASIPPGEAGALLAAIDGYEEPV-TRLGLQLLAL 229 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T R E RW E+ + + W +PA RMK H VPLS A A+LE ++ L+G R Sbjct: 230 TFVRVGEMRGMRWSELREDGTVWVVPADRMKAGLPHVVPLSQQARAVLEQLRVLTGDRNL 289 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAALAH 363 + S ++P ++ T AL R G G + +HG R++AST LNE+ GF DVIE LAH Sbjct: 290 VLDSPLRPGHALSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAH 349 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 + + VR AYNR+ YL+QRR +MQWWAD Sbjct: 350 RETDTVRAAYNRAQYLDQRRGLMQWWAD 377 >UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C3XC22_OXAFO Length = 427 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 147/430 (34%), Positives = 225/430 (52%), Gaps = 22/430 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ KPL+ +IK KPK+ Y+L+DG GL L + SGSKLW+ ++ +P K+ ++ S Sbjct: 1 MAKIIKPLSPIQIKNTKPKEKAYKLFDGGGLYLEVLPSGSKLWRLKFQKPSGKE-SRLSL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT-------NTFLLVAER 113 GAYP VSL RK R E++ LLA+ IDP E +KEQ QE F +A R Sbjct: 60 GAYPDVSLEQVRKKREEARRLLAQGIDPSEDRKEQKEAKQEQDVIRAFKDDRMFERIAMR 119 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAH---TLVKAV-QPVQARGALE 169 + KK T+DY + + R E +FPAIG +I EI+ TL KAV + + ++G Sbjct: 120 LYASKKGRTTDDYRNTMLRQFELHLFPAIGKKNIAEIEGRELFTLFKAVSEKLNSKGKPM 179 Query: 170 T--VRRLCQRINEVMIYA--QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHT 225 T R+LCQ EV A +N+ P ++ K K Q ++M I +LPQ + Sbjct: 180 TYMARKLCQWAAEVYDLANVENSSFALNNPCRSVIKFLPKHQTEHMARIGFTELPQFIQA 239 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 + + T+ L T R A+W + D N W ++ N H +PL Sbjct: 240 LEAYGGHILTKSAIWMLLYTGMRQTSIRRAQWSDFDLNKGIWNRKPEKVDKN-IHIIPLP 298 Query: 286 DGALAILEMMKPLSGG--REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIA 343 + A+++L+ ++ L+ G +FPS M+ + A++R G + HGLRS+ Sbjct: 299 EQAISLLKDIQLLATGNSENLVFPSVFAGQLKMSEAAIGQAIERMGFQ--MTGHGLRSVV 356 Query: 344 STALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA-ADSGSIV 402 ST LNE GF P ++E L H + + AYN + +LE+R+ MMQ WA+ + + + + Sbjct: 357 STGLNELGFTPRLVEVQLGHKKGDAIEAAYNNAQHLEERKKMMQRWANYLNSFKEPKNEK 416 Query: 403 LTHLSKIRLV 412 LT+L K ++V Sbjct: 417 LTYLVKKKVV 426 >UniRef50_B6BKY5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKY5_9PROT Length = 400 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/401 (35%), Positives = 210/401 (52%), Gaps = 15/401 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR KPLT+T+IK AK K+ Y L DG GL L + +G K W+FRY + K S Sbjct: 1 MARTVKPLTETQIKNAKAKEKTYILSDGAGLYLEVNINGGKWWRFRY--KYNDKIKKVSL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDI-DPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G YP +L++AR+ R E++ +LA D DP K V +E TF AE + Sbjct: 59 GVYPDTTLANARRKRDEARNILANDNRDP--FIKIVVHKKEEVVQKTFQEWAEWYITEIS 116 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 T +++ + + ++D++P IG + +IKA ++K + ++ RGA+E+ R+ IN Sbjct: 117 TELSDTHITRTVKGFKKDVYPIIGSKRMNDIKARDIIKIMHIMKERGAVESARKTFSSIN 176 Query: 180 EVMIYAQNT--GLIDAVPSVNI--GKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMS 234 V A + ID P+ +I G Q N P I P +L L+ ++ + S Sbjct: 177 RVFAKALSNFPDEIDRNPTADIKLGDILGAKQTTNYPIITEPKELATLLKAIKEYTGDTS 236 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 T T RP ARWDEIDFN +W IPA++MK ++ VPLS ++E+ Sbjct: 237 TILALTMIAHTFVRPINIRLARWDEIDFNTKQWVIPASKMKTKKELIVPLSK---QVIEL 293 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEG-F 352 +K +FPS PM+ + AL+R G +V+H R I ST +E+G + Sbjct: 294 LKEAKSDSALVFPSIRSKTSPMSDNALVGALRRMGYSREEIVAHSFRGIFSTIAHEKGIY 353 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 DVIE LAH + V +AYNR+ YLE+R MMQWW+D + Sbjct: 354 AHDVIETQLAHTVGSSVSQAYNRAKYLEERTKMMQWWSDYL 394 >UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M393_9ENTR Length = 420 Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 133/403 (33%), Positives = 215/403 (53%), Gaps = 20/403 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL D I+ A ++ Y+L D GL L+I +SGS+LW FR+ ++ + +FG YP + Sbjct: 2 PLNDHIIQNAISQEKPYRLADSLGLYLVISNSGSRLWYFRF--RFNGKQNRIAFGPYPQI 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +++DAR+ R ++ LL I P EH+K + + +KT TF +A W + +E + Sbjct: 60 TIADARRKRDAARKLLTSGISPSEHRKSE--KAASSKTRTFQHIALAWHSSCLNRWSEGH 117 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A+ I L+R +FP +G I +I+ L + ++ V +G + R+ Q + ++M ++ Sbjct: 118 ANKILVCLQRYVFPYVGKKDIAKIETFHLAELIKEVNNKGVHDVASRIRQYLTKIMRHSV 177 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 GLI P++++ ++ P++ L +L+ + R L Sbjct: 178 QQGLIHYNPALDLEDIITPVVVQHYPALPLRSLSELLIKIDDYKGQELIRLALELSLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARM------------KMNRDHTVPLSDGALAILEM 294 R +E ARWDE + W IPA R KM +H VPLSD A+ ILE Sbjct: 238 LRASELRFARWDEFNMKIHIWTIPAKRKAVDGVRFSDRGSKMKEEHLVPLSDQAMKILER 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--GVLVSHGLRSIASTALNEEG- 351 +K +SG EF+F S N+PM+ T+N AL+ G + +HG R++A +ALNE G Sbjct: 298 IKKISGESEFVFHSIRNLNRPMSENTINKALRVIGYCTKNDVCAHGFRTMACSALNESGK 357 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLV 393 + D IE ++H D+N VR AY ++++YLE+R MMQWW+D + Sbjct: 358 WSKDAIERQMSHKDRNNVRAAYLHKAEYLEERFEMMQWWSDYL 400 >UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B120_SULD5 Length = 419 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 136/412 (33%), Positives = 218/412 (52%), Gaps = 20/412 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +K PLTDTE+K +K ++ Y+L DG GL LL++ +GSK W+ Y RP R S Sbjct: 1 MPKKVLPLTDTELKKSKIQEKTYRLTDGAGLYLLVEPNGSKGWRLDYTRP-NGGRNTISL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDP----------QEHQKEQVRNSQEAKTNTFLLV 110 G YP ++L +AR+ R E K + K +DP Q +KE +E K NTF V Sbjct: 60 GTYPTITLCEAREKRDELKKQIKKGVDPSLERKGVKELQREEKEADHAEEERKQNTFEKV 119 Query: 111 AERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET 170 A ++ + Y LE IFP +G+I I ++ +++ ++ ++A +ET Sbjct: 120 ARDFFESITIELVPKYHSSKLARLENHIFPYMGNIPIDQVSRLMIIEHLERLKAANKIET 179 Query: 171 VRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF--EKPQKKNMPSIR-PDQLPQLMHTMR 227 RR+ I +V YA L +I K + K + ++ P+I P ++ +L+ + Sbjct: 180 ARRILNIIEQVYRYAVTHELAPHNIIADIDKRYVIGKKEVRHFPTITDPVEIGKLVRMID 239 Query: 228 TASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDG 287 +ST+ +LT RP A W+E D W+I A +MKM R H +P+ Sbjct: 240 EYPGDISTKYALKLAILTAQRPYNIRFAEWNEFDLERDVWQISAEKMKMKRPHIIPIILQ 299 Query: 288 ALAILEMMKPLSGGR-EFIFPSRIKPNQPMNSQTVNAALKRAGLGGV-LVSHGLRSIAST 345 IL ++P + R +++FP+ +P++ T+N AL+R G +VSHG R++ ST Sbjct: 300 IKTILRELEPFTKNRSQYLFPALTSNVRPISENTMNQALRRLGYTKEEIVSHGFRAMFST 359 Query: 346 ALNEE----GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 NE GF D+IE LAH ++N+ + AYNR++YL +RR +++WWA+ + Sbjct: 360 IANEHIPEHGFHSDIIERHLAHSEQNKTKGAYNRAEYLNERRGLIEWWANFL 411 >UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0I233_HAES1 Length = 434 Score = 223 bits (569), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 145/412 (35%), Positives = 219/412 (53%), Gaps = 21/412 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR KPL++TEI+ AK K Y L DG+GL L ++ SGSK+W+F YY+P TK+RT+ S Sbjct: 20 MARLIKPLSNTEIEKAKIKKKAYPLRDGNGLFLSVEISGSKIWRFNYYKPYTKKRTEISI 79 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW-NVKK 119 G YP +SL ARK+R E LLA++IDP+ H ++Q +N+Q + NTF V +W+ + Sbjct: 80 GKYPEISLLQARKIRDEYLALLAQNIDPKTH-RDQKQNTQALERNTFKYVCAKWYAEIYP 138 Query: 120 TSV-TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 T ED W+ LER IFP + +I ++EI L+ + + A L+ + RL + Sbjct: 139 TKAPNEDTRARNWQRLERHIFPKLAEIPLSEITPRLLIDVYREIGASNTLDKLHRL---V 195 Query: 179 NEVMIYAQNTGLIDAVPSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTA----SISM 233 + Y G+I+ + N+ K F P KN P+I P +LP+L+ + TA + Sbjct: 196 KATLDYGIKLGIIEG-HNCNLAKDDFIAPLAKNHPAITPAELPELLKAINTAFKEGKLEF 254 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-------DHTVPLSD 286 +T F LLT R E W ID IP+ MK R DH +PLS Sbjct: 255 NTLFAFNLTLLTGLRQKELTRIEWAFIDDGNKLLIIPSENMKQTRKLREQPKDHIIPLSS 314 Query: 287 GALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 + ++ ++ +G ++FP N+ + TV+ AL+ G +HGLR + + Sbjct: 315 QMIKLIGTIRQFNGSSPYLFPRVRNRNKTIGLDTVSNALRDNGYRDKQDAHGLRVVFRSY 374 Query: 347 LNEEGFPPDVIEAALAH--VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 L++ GF V E A+AH K +++ Y+R DYLE+R+ Q W D + Sbjct: 375 LSQIGFSVVVGELAIAHNSTGKGKIQAIYDRYDYLEERKQAYQAWGDYCEKC 426 >UniRef50_B4X5T7 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5T7_9GAMM Length = 398 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 209/396 (52%), Gaps = 12/396 (3%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 +T L+D +I+AAKP+D Y + DG+G+ L I G K W+F+Y ++ + S G Y Sbjct: 2 ETNKLSDVKIRAAKPQDKLYSISDGEGMFLEISPKGGKWWRFKYR--FNGKQKRLSLGTY 59 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK----K 119 P+ SL AR R +++ LLA +DP + +K + ++ A NTF VAE W K K Sbjct: 60 PSTSLKAARDKRQQARELLASGVDPAQQRKTEKLATETALRNTFAGVAEEWAQNKVRSEK 119 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + T + IW L+ + P +G I+EI L +Q Q T RL + Sbjct: 120 WTPTTEKKRRIW--LDNGLMPYLGSRPISEITTAELWGVLQHTQKTSGY-TANRLRGMAS 176 Query: 180 EVMIYAQNTGLIDAVPSVNI-GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 E+ +A TG D P++ + G+ K +K + + PD++ +++ + +++T+ Sbjct: 177 EIFNFAMATGRADNNPALPLQGQIAVKKEKHRLAILEPDEVGKMLRAIDGCQAAVTTKAA 236 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 L RP E A W EID + W IPA +MKM H VPLS A+AIL+ ++PL Sbjct: 237 ARLAPLVFVRPGELRHAEWSEIDLKKALWSIPAEKMKMRESHVVPLSRQAVAILKEIQPL 296 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVI 357 +G ++F KP +P++ T+N LK G G + HG R+IA T L+E D I Sbjct: 297 TGSSGYVFEG-TKPGEPISDNTLNKLLKALGYKGKMTQHGWRAIARTLLDEVLDVRVDWI 355 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E LAH ++ RAYNR+ +LE R MMQ WAD + Sbjct: 356 EHQLAHSVRDANGRAYNRTSHLEGRIGMMQLWADYL 391 >UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacteria RepID=B1Y4T5_LEPCP Length = 427 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 142/390 (36%), Positives = 205/390 (52%), Gaps = 23/390 (5%) Query: 8 LTDTEIKAAKPKD--ADYQLYDGDGLTLLIKS------SGSKLWQFRYYRPLTKQRTKQS 59 LTDTE + AK + A +L D GL L +K SGSKLW+++Y R K++ + Sbjct: 2 LTDTECRNAKCPEGRAFVRLADAGGLYLEVKPPGAKTPSGSKLWRWKY-RHGGKEKL-LA 59 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 GAYPAVS++ AR+ +A+++ LL DP E +KE +F VA +WW K Sbjct: 60 IGAYPAVSVAGARREQAKARALLDAGTDPGEARKEAKYAKLNEHETSFEAVARQWWAGWK 119 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + TE YA+ + R LE D FP IG + + A V+ + ++ARG E RR+ + Sbjct: 120 ANKTERYAEYVLRRLELDAFPVIGAKPVAGLTAPDFVRMAKKIEARGVGELARRIMETSG 179 Query: 180 EVMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 +VM +A GL + P+ ++ G + +N + +LP LM + S+ TR Sbjct: 180 QVMRWAVAHGLTERNPTADVKPGDILKPRTVENFARVGAAELPDLMRHINAYDGSVFTRL 239 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIP------AARMKMNRDHTVPLSDGALAI 291 LT R +E A+W E D +A+EW IP R R H VPL+ ALA+ Sbjct: 240 ALQLMALTFVRTSELIGAQWQEFDLDAAEWTIPPDRIGRKGRQGERRAHLVPLAPQALAV 299 Query: 292 LEMMKPLSG-----GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 L +++ G G +FP +PM++ T+ AL+R G G + HG R IASTA Sbjct: 300 LRLLQSARGADRCRGPALLFPGERDHERPMSNNTMLKALERMGYKGKMTGHGFRGIASTA 359 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRS 376 LNE GF DVIEA L+H++ N VR AYN + Sbjct: 360 LNEMGFRFDVIEAQLSHIEGNRVRAAYNHA 389 >UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRV8_BORPD Length = 402 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/397 (34%), Positives = 214/397 (53%), Gaps = 10/397 (2%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 + L+D +K A+PKDA Y+L DG GL LL++ +GS+LW++++ L + + G YP Sbjct: 8 RALSDRAVKNARPKDAPYKLADGGGLHLLVQPNGSRLWRYKFR--LGGKEQVFAIGRYPD 65 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQ----VRNSQEAKTNTFLLVAERWWNVKKTS 121 V L++AR+ ++ L+A + P +++ ++ AK TF V + W + Sbjct: 66 VGLAEARERHLAARRLVADGVSPTAQRRDDRARMAEDAARAKAGTFKAVLDSWKATPARA 125 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 + R ++R + P +G + EI L ++ V A E R L +N + Sbjct: 126 LAPATIRQRDREIDRYLEPKLGARPVGEITRRELADLLKTV-ATDTPEVARNLRTHMNSI 184 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 +A + GLI P+ +A ++ + P++ D+L L+ ++ ++ +T+ F Sbjct: 185 FEHAVDVGLIAGNPTPG-PRALPARKQTSHPAVAMDELGALLASIDASACQPATKAAFRL 243 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LLT R E RWDEID +A EW IPA RMK H VPLS A+ +L ++ SGG Sbjct: 244 LLLTACRKLEITSGRWDEIDLDAGEWLIPADRMKTRTAHWVPLSRQAVELLRAVRAHSGG 303 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAA 360 +++FP R KPN PM+ +N L+R G + HG RSI ST N + G DVIE Sbjct: 304 -DYVFPHRDKPNTPMSPTALNEMLRRVGYRREMTVHGTRSIFSTWANAQPGANVDVIERC 362 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 LAH +++VR AYNR Y ++RR ++Q WAD++ AA+ Sbjct: 363 LAHAPRDKVRAAYNRHAYKDERRALLQSWADVLDAAE 399 >UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LIX3_RHOVA Length = 392 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 140/391 (35%), Positives = 211/391 (53%), Gaps = 12/391 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +I+ KP + D++L D DGL LL++ +GSKLW+ Y R L K +T + G YP ++ Sbjct: 3 LSDLKIRTTKPTERDFKLSDADGLYLLVRPNGSKLWRLNY-RHLGKNKT-LAIGKYPDIA 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS AR RAE++ LLA+ +DP ++ +V ++ A NTF VAE + S+ D + Sbjct: 61 LSTARDKRAEARRLLAEGVDPSYRKQVEVAKAKVAAANTFEAVAEEYL----ASLARDRS 116 Query: 128 DDIWRS----LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + R+ L + ++P +G I E++ H +++A+Q ++ RG ++ R I +V Sbjct: 117 EGTVRANSHILRKKVYPLLGRRPIAELRPHEILEALQSIEDRGQVDMAHRARTLIGKVFQ 176 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLFMWQ 242 A + P+V + + + +N S+ +Q L+ + T S + R ++ Sbjct: 177 LAALSDRAPTDPTVVLRGRLKSWRVQNRASVTSEQTFAPLLRRIDTYEGSPNVRAAMLFL 236 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 T R E A W EID W+IP RMKM R H VPL+ AIL M G Sbjct: 237 AHTFVRTVELRFATWSEIDLEDGVWRIPEERMKMGRPHDVPLTASTRAILRDMAKFRRG- 295 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++IF S + T+ A+K G G + HG RS AS+ LNE G+ DVIE LA Sbjct: 296 DYIFVSAHVGKSVLGDGTLRKAMKSIGYQGRMTPHGFRSSASSILNERGYRSDVIEMQLA 355 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 HV+KN VRRAYNR+ Y +R MMQ W++LV Sbjct: 356 HVEKNAVRRAYNRTLYWNERVSMMQDWSNLV 386 >UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobacteria RepID=B8GNQ7_THISH Length = 422 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 203/382 (53%), Gaps = 12/382 (3%) Query: 23 YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLL 82 Y L DG L L + SGSKLW++RY L + + G YP VSL AR R ++ L+ Sbjct: 21 YWLKDGGSLFLYVTPSGSKLWRYRYR--LGGKPAIYAIGKYPQVSLEAARTERDRARELV 78 Query: 83 AKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAI 142 K + P ++ + E NTF VA RW +E YAD + R+LE D+FP + Sbjct: 79 KKGVHPVVEKRVNISTQLEKNENTFEPVARRWM-ASNVQWSEGYADQVKRTLENDVFPKV 137 Query: 143 GDISITEIKAHTLVKAVQPVQARGALET---VRRLCQRINEVMIYAQNTGLIDAVPSVNI 199 G + ++ I+ L ++ V RGA +R+LC +++ YA L D+ P+ + Sbjct: 138 GKLPVSSIRTAHLRPVIKDVAERGAPTVAILIRQLC---SQIFAYAAGEELCDSDPTALL 194 Query: 200 GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDE 259 ++ ++P+ ++ P + ++P+ + + A ++ L + LT R AE +A W E Sbjct: 195 KRSVKRPRVRHHPPLPWQEIPKFLSRVDDAGYRVTVIALRL-MALTYVRTAELRKAHWSE 253 Query: 260 IDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQ 319 D +++ W +PA RMKM H VPLS A+ +L+ + L+GG + +FP KP M++ Sbjct: 254 FDLDSAMWTVPAGRMKMRDPHIVPLSKQAIVLLKELHTLTGGGKVLFPGFRKPGTVMSAT 313 Query: 320 TVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV--DKNEVRRAYNRSD 377 T+N L+R G GG SHG RS A+T L +P + ++ LAH K+ R Y+ + Sbjct: 314 TLNKVLERMGYGGQFSSHGFRSTATTLLGLLSYPENRVDLQLAHSKRKKDSSRAPYDHTK 373 Query: 378 YLEQRRPMMQWWADLVKAADSG 399 Y+ R+ +MQ WAD++ A G Sbjct: 374 YIASRKIIMQDWADILDAMARG 395 >UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46Z79_RALEJ Length = 418 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 142/404 (35%), Positives = 202/404 (50%), Gaps = 12/404 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDAD-YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M ++ PL D + + AK A +L DG GL L + SG+K W+ +Y RP +K + Sbjct: 1 MPKRILPLADLQCRQAKYSTAGGNRLRDGGGLYLELLPSGAKKWRMKYQRPGSKSENLLT 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG YPAV LS AR+ R E++ LA DP + EA NTF VAE W + Sbjct: 61 FGDYPAVGLSAARERREEARAQLAVGTDPALARDLAKATVAEAARNTFRAVAEEWLKHRH 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + + YA + LERD++P +G I I L+ + ++ARGA E RR Sbjct: 121 DTWSASYAQKTKQLLERDLYPDLGQHPIASITPAFLLTVARKIEARGAYEMPRRALVTAG 180 Query: 180 EVMIYAQNTGL--IDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 ++ YA TG IDA + + + +P K+ P + QLP L+ + + T Sbjct: 181 QIFQYAIGTGRASIDASAGM-VAQLKPRPPVKHYPHVADTQLPDLLQRIDRYTGRPETIA 239 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALA 290 +LT R E A W E+D +EW +P+ RMK H VPLS +A Sbjct: 240 AVKLAVLTFIRGGELRYAEWSELDLEKAEWHVPSGRMKGRLWHKLSGTPHVVPLSRQTIA 299 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 +LE +K +G +FP + +P+ + +N G G HGLR +AST LNE Sbjct: 300 LLEDLKQYTGHYALLFPGAVSVLKPVTGEAMNKVFHSIGFKGQQTVHGLRGLASTLLNES 359 Query: 351 G-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 G F P VIEA L+H + N+ AYN + YL +RR +MQWWAD + Sbjct: 360 GLFDPRVIEAQLSHKETNKTIAAYNHAKYLPERRRVMQWWADYI 403 >UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VMW7_9GAMM Length = 419 Score = 220 bits (561), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 209/387 (54%), Gaps = 7/387 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ KP + + D GL L + SG + W+ +Y + + + G+YP +S Sbjct: 22 LSDAQVRKIKPLEKKKRYADEKGLYLEVTPSGGRFWRLKYR--FNGRESTLTIGSYPEIS 79 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED-Y 126 L+ AR+ R E+++ L +IDP + ++++ + E + F +A W +K + E Y Sbjct: 80 LAQARRARDEARIQLYSNIDPNAVKNQRLQQTDE--SILFKSLAMEWMEDRKAVIKETTY 137 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D+ E+D+FPA+G++ I +IK ++ + ++ARGALE +R + +A Sbjct: 138 LRDL-SVFEKDLFPALGNMPIDQIKGKDVLACAKKIEARGALEMAKRSIPLTGRIFRFAI 196 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G+++ P+ ++ +A + + K+M + + P + M S + LT Sbjct: 197 RKGIMENDPTPHLQEALKPRKVKHMARLDILEFPPFLERMDRYHGSPMIKTAIQLMTLTF 256 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R AE WDEIDF W+IPA +MKM + H VPLS A+ ++E ++PL+G ++++F Sbjct: 257 VRTAELRMMEWDEIDFETKLWRIPADKMKMAQPHIVPLSKQAIELIEQLRPLTGNKQYVF 316 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 + +PM+S + ++ G G + HG R +AST L+E+G+ D IE LAH Sbjct: 317 YNH-STAKPMSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRVG 375 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 N V +AYN + +L+ R MMQ W+D + Sbjct: 376 NAVSQAYNHAQHLDYRIKMMQEWSDFI 402 >UniRef50_A5UG79 Prophage integrase n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG79_HAEIG Length = 339 Score = 220 bits (560), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 132/343 (38%), Positives = 201/343 (58%), Gaps = 11/343 (3%) Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-- 116 S GA+P +SL+ AR++ E + L+ ++IDP E++ N +E KT TF +A RW + Sbjct: 2 SLGAFPDLSLAYAREIATEYRGLILRNIDPLEYRNSS--NIEEKKT-TFAEMAIRWRDKR 58 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 +K + + +D +R +E +FP I D+ I + TL + P++ T+ ++ Sbjct: 59 LKLGKLKPETVNDAFRRVELHLFPKIADLPIDQANYKTLEPVLSPLKNSN---TLYKINI 115 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 IN++ A++ LI P I F + KN P++ P++LP+L M+ A++ T Sbjct: 116 AINQIFRMAEDEDLIVKNPFRKIHDEFTYVETKNHPTLAPEELPRLFEVMQGANLEKPTA 175 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN-RDHTVPLSDGALAILEMM 295 L WQLL+I R +EA W +ID++A IPA RMK R H+VPLS AL ILE M Sbjct: 176 LLIEWQLLSILRSSEAVSIEWADIDWDAKALHIPAERMKGGKRSHSVPLSRQALNILEQM 235 Query: 296 KPLSGGREFIFPSRIKP-NQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFP 353 + +G R+++F SRI P N+PMNS N ALKR G G+LV+HGLRSIAST L+E + F Sbjct: 236 RRYNGNRKYVFCSRIAPYNRPMNSGAANVALKRMGFKGLLVAHGLRSIASTYLHELDRFS 295 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 + IE L+H ++ +VR AY++S R+ +MQ W + + A Sbjct: 296 SEAIELCLSHENRGKVRAAYDKSKKWRSRQEIMQTWGIMWRNA 338 >UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio RepID=B8J055_DESDA Length = 402 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/392 (31%), Positives = 208/392 (53%), Gaps = 7/392 (1%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T LT+ +I+ KP + DG+GL L +G K W+ +Y + + + SFG +P Sbjct: 4 TNKLTEIKIRNIKPNGKIERFVDGEGLYLETSVAGGKHWRMKYR--VNGKEKRLSFGPWP 61 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +SL +AR++R E+K L + +DP +K + QE TF +A + +++ Sbjct: 62 DISLKEAREMRDEAKRQLRESLDPSAEKK---KAKQEQAAPTFRDIALEYVEHQRSVWAA 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + L D++PA G I + ++ ++ ++ R A ET R+ + + Y Sbjct: 119 SHTRTVEGRLALDVYPAFGAKPIAAVTPQDILAMLRKIEERRAFETASRVLGFCSLIFKY 178 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 A GL++A P ++ A + K + +I +P ++ LM + S+ R ++ Sbjct: 179 AVTLGLVEADPCRDLRPALKPYAKGQLAAITKPKEVGALMRAIDDYKGSVVVRAALLFSA 238 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT RP E W EI+F EW IPA +MK +H VPLS AL +L + P +G + Sbjct: 239 LTFCRPGEIRHVEWAEINFEREEWTIPAEKMKGRTEHRVPLSRQALEVLHGIMPYTGSAK 298 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++FP+ N+P++ V +AL+ G + +HG RS+AST LNE G PD IEA LA Sbjct: 299 YVFPTPRSNNRPLSENGVLSALRNMGYTKEQMTAHGFRSMASTLLNELGHRPDAIEAQLA 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 H +++R YNR++Y+++RR +MQ WAD ++ Sbjct: 359 HKGADKIRATYNRAEYMKERRNLMQAWADYLE 390 >UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepID=Q1QLT5_NITHX Length = 416 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 144/398 (36%), Positives = 217/398 (54%), Gaps = 16/398 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I+ AKP D +++ D GL L + ++G KLW+FRY R K++ + G YP +S Sbjct: 7 LTDTAIRKAKPGDKPFKMADSGGLHLYVSTAGGKLWRFRY-RYADKEKL-LTIGPYPDIS 64 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L DAR R +K L DP +K + + + NTF +A W+++ K E +A Sbjct: 65 LVDARAARDAAKASLRDGRDPGVIKKLRKLANVTSTANTFEAIAREWYDLNKGQWVERHA 124 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 DD+ SLER++FP +G+I + +IKA ++ ++ ++AR A ET RR+ QR++ V +YA + Sbjct: 125 DDVLTSLEREVFPVLGNIPVADIKAPEVLAVLRGIEAR-AKETARRVRQRMSAVFVYAIS 183 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G DA P+ + KA K P+I D +++ +T+ LT+ Sbjct: 184 SGRADADPAATVQKAMAPMVKGRQPAITDLDAAREMLGKAEAEKAHPATKLALRIIALTV 243 Query: 247 TRPAEAAEARWDE-IDFNASEWKIPAARMKMN--------RDHTVPLSDGALAILEMMKP 297 RP W E D W+IPAARMK+ RDH VPLS AL +E ++ Sbjct: 244 VRPGTLITTPWSEWTDMEDGVWRIPAARMKLRLQHKDDDARDHWVPLSRQALEAVEALRT 303 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPD-- 355 L+G FP+ ++ M+ + L RAG V HG R+ S+ +NE FP D Sbjct: 304 LTGRGPIPFPNTRHAHRTMSENAIGYLLNRAGYHHRHVPHGWRATFSSVMNER-FPADKP 362 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 +I+ LAHV K++V AYNR+ +LE+RR + Q WADL+ Sbjct: 363 IIDLMLAHVPKDKVEGAYNRALHLERRRKLAQEWADLI 400 >UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacteria RepID=Q3JN19_BURP1 Length = 462 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 8/400 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++ AKP+D Y+L DGDG+ LL++ +G K W+ YR L KQ+T + G YP VS Sbjct: 60 LSDLAVRNAKPQDKPYKLTDGDGMFLLVQPNGGKYWRL-AYRYLGKQKT-LALGVYPEVS 117 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ RAE++ LAK DP E +K R ++ A N+F +VA W ++ V Sbjct: 118 LALARQRRAEAREQLAKGADPGETKKADRRAARLAADNSFEVVALAWLEERRPYVEPRQH 177 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + L+ D+FP +G I +I A ++ ++ + +RGA T R+ I V +Y Sbjct: 178 ERTLVRLKNDVFPWLGKRPIADIDAPEILAVLKRIDSRGARFTAHRIRSEIGRVFVYGIK 237 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G A P+ ++ KA Q + SI P Q+ +++ S + C + Sbjct: 238 EGHCKANPAASLVKAIPPAQTTHFASITEPAQVGEMLRAFDGFSGTFPVLCALKLAPMLF 297 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E +A W D +EW+ + K +H VPL+ A+ IL+ + ++G +++F Sbjct: 298 VRPGELRKAEWSHFDLEKAEWRYLVTKTKT--EHLVPLATQAVKILKELHAVTGSGQYVF 355 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLG--GVLVSHGLRSIASTALNEE-GFPPDVIEAALAH 363 P +PM+ +NAAL+R G + HG R++A T L+EE P+VIE LAH Sbjct: 356 PGARSKQRPMSDAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAH 415 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 + + RAYNR+ ++++R MMQ WAD + G+ ++ Sbjct: 416 TVPDTLGRAYNRTKFIKERCAMMQKWADFLDQLKLGAKII 455 >UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C8U1_ACAM1 Length = 399 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/394 (33%), Positives = 211/394 (53%), Gaps = 9/394 (2%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T LTD +++ AKPK Y+L DG GL L I +G K W++RY + + + S G+YP Sbjct: 3 TNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYR--IQGKESTFSIGSYP 60 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 + L +AR E++ L+A+ ++P K + Q A+ NTF VA+ W++ K +E Sbjct: 61 ELGLGEARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSE 120 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 Y + L RD+ P++G +TEI A ++ ++ V+ARGA + + V+ Y Sbjct: 121 SYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRMVLGY 180 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQL 243 A TG D ++G A K+ +I P ++ +LM + SM R Sbjct: 181 AVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGA 240 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG-- 301 LT RP E +W +I++N EW+ + K DH VPL+ A+ IL+ ++ ++G Sbjct: 241 LTFVRPGELRTMQWSQINWNTKEWRFQVS--KTETDHIVPLATQAIEILQTLQLITGNGT 298 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEE-GFPPDVIEA 359 ++FPS + M++ V AAL+ G+ + HG R++A T + EE + P++IE Sbjct: 299 SRYVFPSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEH 358 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LAH + + RAYNR+++LE+RR MMQ WAD + Sbjct: 359 QLAHAVRGPLGRAYNRTEFLEERREMMQAWADYL 392 >UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enterobacteriaceae RepID=INTB_ECOLI Length = 396 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 209/379 (55%), Gaps = 21/379 (5%) Query: 31 LTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQE 90 + LL+ +GSK W+ +Y R KQ+ + G YP ++L+DAR R E++ LLA +DP + Sbjct: 1 MHLLVHPNGSKYWRLQY-RYEGKQKM-LALGVYPEITLADARVRRDEARKLLANGVDPGD 58 Query: 91 HQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEI 150 +K +++K TF VA W K +ED+A + +SLE ++F A+G+ +I E+ Sbjct: 59 KKKND--KVEQSKARTFKEVAIEWHGTNK-KWSEDHAHRVLKSLEDNLFAALGERNIAEL 115 Query: 151 KAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKN 210 K L+ ++ V+ G LE RL QR +M YA +GLID P+ + A +++ Sbjct: 116 KTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQH 175 Query: 211 MPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIP 270 P++ ++P+L+ + + + TR LL R +E ARW EIDF AS W IP Sbjct: 176 RPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIP 235 Query: 271 AAR------------MKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNS 318 R KM H VPLS ALAIL+ +K G + IF ++PM+ Sbjct: 236 PEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSE 295 Query: 319 QTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAY-N 374 TVN+AL+ G + HG R++A ++L E G + D +E ++H+ +N VR AY + Sbjct: 296 NTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIH 355 Query: 375 RSDYLEQRRPMMQWWADLV 393 ++++LE+RR M+QWWAD + Sbjct: 356 KAEHLEERRLMLQWWADFL 374 >UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Sinorhizobium phage PBC5 RepID=Q8W6M6_9CAUD Length = 433 Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 145/407 (35%), Positives = 221/407 (54%), Gaps = 23/407 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +IK AK D DY+L DG GL L + S+G+K W+ RY R K++T G YP VS Sbjct: 4 LTDKQIKNAKKADKDYKLADGGGLNLFVLSTGTKSWRLRY-RFDGKEKT-LVIGNYPDVS 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR R +K L DP +K + ++ +TF ++A W ++K + E +A Sbjct: 62 LADARGEREAAKETLKSGRDPNVVKKIEKAIGKQQAADTFEVLAREWHKLQKPTWVEKHA 121 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+ SL D+FP IG + I +I A T++ ++ V+ R A ET RR+ QRI+ + +Y Sbjct: 122 SDVLDSLVNDVFPIIGQMPIRDIDAPTVLGVLRLVEQRDAKETARRIRQRISAIFVYGIA 181 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQ-LMHTMRTASISMSTRCLFMWQLLT 245 +G P+ + A +K P+I D+ + L+ T +T S ++ L +LLT Sbjct: 182 SGRASEDPAAVVRGAMAPMKKGRQPAITNLDKAREMLVATWKTPSHPVTKLGL---RLLT 238 Query: 246 IT--RPAEAAEARW---DEIDFNASEWKIPAARMKM--------NRDHTVPLSDGALAIL 292 +T RP W DE+D + W IPAARMK+ RDH +PLS A+ + Sbjct: 239 LTAVRPGTLISTPWTELDEVDESDPVWVIPAARMKLLLQHKDDETRDHLIPLSKEAMETI 298 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 +++ L+G F+ P+ ++PM+ + L R+G V HG RS ST +NE + Sbjct: 299 TVLRSLTGRGPFVLPNGRHAHKPMSENALGYLLNRSGYHHKHVPHGFRSTFSTVMNER-Y 357 Query: 353 PPD--VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 P D VI+ LAH K++V AYNR+++LE+R+ + Q W L+ D Sbjct: 358 PADRQVIDLMLAHTPKDKVEGAYNRAEHLERRKELAQIWDGLIITKD 404 >UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enterobacteriaceae RepID=INTZ_ECOLI Length = 402 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 215/398 (54%), Gaps = 11/398 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 PLT I AA+P+D Y+L D GL LL+ +GSK W+FRY+ L K+ Q+ G YP Sbjct: 5 PLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYW--LNKREFLQAIGVYP 62 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 ++L +AR+ ES+ L+A I+P E +++ F VAE W+ + +E Sbjct: 63 LITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSE 122 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 YA + +LE+D++P +G SI +I A ++ +Q + R A E R+L +RI E+ + Sbjct: 123 SYAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQARKLRRRIGEIFKF 181 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM-RTASISMSTRCLFMWQL 243 A T L+ P ++ A + + + I ++P + R S+ + T + + Sbjct: 182 AVITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERAGSVQIQTAIRLL--I 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT R AE RW+ I+ + +PA MK R H VPLS A+ +L+ SG Sbjct: 240 LTALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSA 299 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALA 362 F+FP R ++P+++ + AL+R G + HG R+ STALNE G + PD IE LA Sbjct: 300 FVFPGRFM-DKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLA 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 HV K +R YN++ YL+QRR MMQ +AD + + +G+ Sbjct: 359 HVPKG-IRGVYNQAAYLKQRRAMMQDYADAIDSILAGN 395 >UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8EC Length = 399 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 11/366 (3%) Query: 36 KSSGSKLWQFRYYRPLTK-QRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKE 94 K++GS W +++ P K QR K G YP + ARK+ E L+ + I P EHQ + Sbjct: 33 KAAGSFSWLYKFTNPHNKAQRQKIILGRYPRTPIDFARKIAMEYNALVKQGIHPTEHQAQ 92 Query: 95 QVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHT 154 Q + +E + TF + + + SV DD +E IFP GD+ + +I Sbjct: 93 Q-KQQKEIEAMTFKEMTSLYREFRADSVKN--VDDAISRVEMYIFPKFGDLPLNKISLAE 149 Query: 155 LVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI 214 + ++P++A G T+ ++C +++ YAQ G ID P + +F K + K+ P+I Sbjct: 150 WHRTLKPMEA-GKNNTLLKICSTSKQILDYAQTCGYIDFNPLTTLRASFRKKKAKHNPTI 208 Query: 215 RPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM 274 P +L + + + + + ST+ +QLLT TRP E A+A+W EIDF WK+PA +M Sbjct: 209 EPKRLAEFIRDLFLSDVERSTKLSIEFQLLTATRPNETAKAKWAEIDFKNRLWKLPADKM 268 Query: 275 KMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--- 331 K + H + L+ ALA+LE ++ +G RE+IF S ++QT N A+K G Sbjct: 269 KTGKPHIITLNSQALALLENIRRFTGDREYIFSSSRSKTGHQSTQTANNAIKSIQGGKYH 328 Query: 332 GVLVSHGLRSIASTALNEEGFP--PDV-IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQW 388 VL SHGLRS+ ST LN P +V I+A LAHV N R YN S + EQ+R +MQ Sbjct: 329 SVLTSHGLRSVFSTYLNGLHDPMIHNVHIDACLAHVVGNGTSRTYNHSAHEEQKRYIMQK 388 Query: 389 WADLVK 394 W D V+ Sbjct: 389 WGDYVE 394 >UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P090_AZOSE Length = 402 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/398 (32%), Positives = 203/398 (51%), Gaps = 6/398 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD I+ K ++ DG GL L + +G KLW++R+ L + + GAYP VS Sbjct: 3 LTDKAIRGVKGGAKPVKMADGGGLYLEVTPAGGKLWRYRFR--LAGKENVFAIGAYPRVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DARK R E++ L+ + +P ++++ + + NTF VA+ W+ K S ++ + Sbjct: 61 LADARKARDEARDLVKQGFNPSHYRQQAKQAVIDENLNTFAPVADEWYQSKVDSWSKGHR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR--INEVMIYA 185 + L++DI P IG + I I + L ++ + ARGA T R + R + V A Sbjct: 121 HHVRTILDKDILPRIGKLPIRSITSPLLHDVMKKIVARGA--TTRAILARQIMGSVFNLA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 T D P+ + + + ++ + + + + + +TR +LT Sbjct: 179 ILTHRADTNPAEPLKRQIARCVTEHHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLT 238 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E ARW E D + W IP RMK + H VPLS+ A+ +L+ ++P++G F+ Sbjct: 239 AVRPGEVCGARWAEFDIDGQNWTIPKERMKTRKPHIVPLSNQAVDLLKELEPITGDTAFL 298 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FPS+ Q M +Q++ A+ + G HG R ST LN G+ D IE LAH + Sbjct: 299 FPSQGTKTQTMPTQSIRNAVVKLGYADKFSPHGARGTFSTMLNGRGYNSDWIERQLAHDE 358 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 N VR +YN YL +RR M+Q WADL+ +G+ VL Sbjct: 359 GNRVRASYNHMQYLPERRKMLQEWADLLDELRTGAKVL 396 >UniRef50_Q4K6S7 Site-specific recombinase, phage integrase family n=4 Tax=Proteobacteria RepID=Q4K6S7_PSEF5 Length = 413 Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 128/407 (31%), Positives = 197/407 (48%), Gaps = 4/407 (0%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL DT + +P+ +Y+ DG+GL +K G K WQ RY RP G Y Sbjct: 7 KRRPLADTTLTGLEPEAKEYRELDGNGLYFRVKPDGGKSWQLRYKRP-AGNWAWMGLGGY 65 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK-TSV 122 P VS + AR+ AE + ++ IDP E ++ AKT TF A+ W K+ + Sbjct: 66 PEVSGALAREKAAELRKTISSGIDPLEQKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGL 125 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + I L++DI PA+GD + EI + ++AR A + IN++ Sbjct: 126 APSTLNKIRTYLDKDILPALGDKPLDEITRTDCAELQASIEARDAHNVAEKCRTWINQIF 185 Query: 183 IYAQNTGLIDAVPSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 A GL + P + A + P+ + P + +L + + ++ ++ R Sbjct: 186 GRAIGLGLTENDPGSRLRDIAAQAPKTQQHPHLLEPELGEFLTALKNTPSRLTARTAAWL 245 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + T +RP A W E D + + W PAA+MKM RD PL A+A L+ + L+G Sbjct: 246 CIWTASRPGMVRLAEWKEFDLDKATWTTPAAKMKMRRDFVCPLPHQAIAALKELHCLTGR 305 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 ++FP N ++ T+N G G LV HG R AST L E G+P + +EA L Sbjct: 306 SRWLFPGVGAKNPTISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQL 365 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 AH ++ + YN++ YLEQR MMQW+AD + A + G ++ K Sbjct: 366 AHKEEG-ISGVYNKAQYLEQRITMMQWYADHLDALEQGKVIQGQFGK 411 >UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurellaceae RepID=A6VNS1_ACTSZ Length = 427 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/424 (32%), Positives = 220/424 (51%), Gaps = 30/424 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA K L+ +I AAKPKD Y L DG GL L IK +G+K W F Y +P K+RT ++ Sbjct: 1 MALLVKHLSAAQINAAKPKDKIYYLSDGLGLRLAIKPNGTKTWLFNYTKPYIKKRTDKTI 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW----- 115 G YP+VSL+DAR E + LLAK+IDP +++ E+ + + +NTF VA W Sbjct: 61 GQYPSVSLADARAKAHEFRELLAKNIDPHQNEIEKEKQERLPMSNTFSHVANEWLVYREK 120 Query: 116 -NVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 +++ +E D R + D +GD S E+K + + + RG +++ Sbjct: 121 IGMERKDYSEKTKTDTIRRVN-DAIEILGDTSFKELKLQHGLALLDAHRTRGQYTEMKKR 179 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQK-KNMPSIRPDQLPQLMHTMRTASISM 233 + + YA+ G D +G+ P K K+ +I +LP+ + +R A+I Sbjct: 180 LFVLKSIAEYAERFGYWDRNEWRYLGEDLPSPDKNKHFAAIHYKELPEFLFELRKANIHY 239 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM---------KMNRDHTVPL 284 S+ +W LL +TR +E A++ +I N + +P + K RDH +PL Sbjct: 240 SSLLAILWGLLNVTRASETVGAKFSDISENEN---LPGELVLTVQVNKGGKGARDHLIPL 296 Query: 285 SDGALAILEMMKPLSGGREFIFPSRIKPNQ--PMNSQTVNAALKRAGLG---GVLVSHGL 339 S A +L ++ S +++FP+ K + +N QT N +K G G G++ +HG+ Sbjct: 297 SRQAGKLLTFIRKNSTS-DYLFPAAYKRGRLVHINPQTPNDVIKSMGAGKYKGIMTNHGM 355 Query: 340 RSIASTALN----EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 R++ S+ N E G P++IE L+H++ ++VR AYNR++YL R +Q WAD V+ Sbjct: 356 RTLFSSYCNDNRLELGLDPEIIEICLSHLNGDKVRNAYNRAEYLPYRLKTLQAWADYVEL 415 Query: 396 ADSG 399 G Sbjct: 416 CAKG 419 >UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WP11_VEREI Length = 387 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 148/400 (37%), Positives = 211/400 (52%), Gaps = 29/400 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT ++AAKP+ Y+L D GL L + +G K W+ Y R KQ T+ ++G +P VS Sbjct: 3 LTVRAVEAAKPRHKGYKLADSVGLYLFVTPAGGKSWRANYLRE-GKQATR-TYGRWPDVS 60 Query: 68 LSDARKLRAESK--VLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 L++ARK A ++ V+ A P +F +A W +K +++ Sbjct: 61 LAEARKAHAAARDGVVPATVAVP-----------------SFETIARAWLKLKLPTLSNG 103 Query: 126 -YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + +LER +FP IG I I LV VQ VQ G +ET R+ RI V Y Sbjct: 104 KHQSQVANTLERFVFPKIGKRPIDTIHRPELVDVVQAVQLDGRVETAHRVAGRIAAVFDY 163 Query: 185 AQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 AQ+ GLI++ P+ ++ + + KK M SI P + LM + ++ L QL Sbjct: 164 AQDAGLIESHPASHLVRVLHSRKVKKPMASIAPAEAGALMRAITDYDEPVTGLGL---QL 220 Query: 244 L--TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L T R E RW E + + W IPA RMK+ H VPLS A AI+ ++ L+ Sbjct: 221 LAHTFVRVGELRAMRWSEFKEDGAVWVIPAERMKLRLPHVVPLSLQAQAIVGQLRLLNAE 280 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAA 360 REF+ S ++P P++ T AL R G G + +HG R++AST LNE+ GF DVIE Sbjct: 281 REFVMDSPLRPGHPLSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQ 340 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 LAH + + VR AYNR+ YL QRR +MQWWA + AA + S Sbjct: 341 LAHKETDAVRAAYNRAQYLPQRRELMQWWAQWLAAAQTSS 380 >UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria RepID=Q5P707_AZOSE Length = 415 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/395 (30%), Positives = 199/395 (50%), Gaps = 7/395 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD + +A K D Y++ D GL L ++ SG+K W++R+ L ++ + G YPA+ Sbjct: 2 LTDAKCRAVKATDKTYRVADSHGLCLEVRPSGAKFWRYRFR--LADKQNMHALGEYPAMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L DAR+ R E++ L+ K I+P H+ + A +TF V W + + +Y Sbjct: 60 LQDARRARDEARELVRKGINPSHHRGLEKAERILALGSTFETVTAEWIERNRPDWSANYI 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + + D+FP IG I ++KA ++ ++ V+ R + + + V +A Sbjct: 120 RQVRARMAGDVFPEIGQYPIADLKAAHVLAMLRKVEKRSPTQAAL-VKTWVGGVFRFAVV 178 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA--SISMSTRCLFMWQLLT 245 L + P+ + +A + Q + +R D++ + + A +++ MW T Sbjct: 179 EQLREDDPTFPLRRAVKPTQVNHHAILRNDEIGAFLRAIAAAPGEVTVKEAVGLMWA--T 236 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E ARW ID +A W IP RMK ++H V L+ A+ IL ++ +G E + Sbjct: 237 ACRINEVTGARWAGIDLDAGLWTIPPGRMKAKQEHVVTLTRQAVEILRRVQVHTGTLEHV 296 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FP R +PM+ + V +RAG G HG+R ST N G+ DVIE LAH + Sbjct: 297 FPHRSDRKRPMSGEAVRDLFRRAGYAGKFTPHGVRGTFSTIANGAGWRADVIELCLAHQE 356 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 +N++RRAYN + L++RR ++QWW DL A G Sbjct: 357 RNQIRRAYNHAQLLDERRELLQWWGDLSDQAKRGG 391 >UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV Length = 385 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 199/388 (51%), Gaps = 15/388 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT +I+AAKPK+ Y+L DG+GL L + SG K+WQ RY + + + G YP ++ Sbjct: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR ++ ++ IDP + +K N N+F + + W++ KK + YA Sbjct: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYDHKKQVWSVGYA 113 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++ + + DI P IG + I +I+ L++ ++ + RGA+E + +R EV YA Sbjct: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 TG P+ ++ A + +KKN P + DQ+P + T S S+ + T Sbjct: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM----KPLSGGRE 303 R E +W +DF I A+ MK + H VP+SD + +L + KP+S E Sbjct: 234 RTKELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVIELLTTLSSITKPVS---E 290 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 F+F R +P+ V +K+ G G+ HG R ST +NE +P D IE LAH Sbjct: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 + VR YN + YL++RR MMQWWAD Sbjct: 351 ANGGSVRGIYNHAQYLDKRREMMQWWAD 378 >UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY10_HALNC Length = 427 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/421 (32%), Positives = 209/421 (49%), Gaps = 30/421 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IKA KP+ Y++ D GL L + +G KLW+ Y +R + G YP V+ Sbjct: 3 LTDTAIKALKPESKPYKVTDEKGLYLFVTPAGGKLWRLDYR--FEGKRKTLALGGYPDVN 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQK-------------------EQVRNSQEAKTNTFL 108 L AR R E++ L+A DP E +K E + + EA +F Sbjct: 61 LKQARVYRDEARQLIANGTDPAELRKAEKTTITESRREEAEAVKIEAMIQAGEALPGSFE 120 Query: 109 LVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGAL 168 + + W N+ +E Y + + L+ +++P +G + ++ A ++K +Q ++ARG + Sbjct: 121 EIGDEWVNMYLADKSEKYRNKVINRLKAEVYPYLGRAPVADVTAPMVLKVLQRIEARGII 180 Query: 169 ETVRRLCQRINEVMIYAQNTG---LIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHT 225 E+ R+ Q I +++ YA TG L D ++N A K + P + L+ Sbjct: 181 ESAHRVKQNIGQILRYAIATGRRELFDVTMALNKAIAPMPKDKNHAAPTEPKDIAPLLRI 240 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 M S TR R E +W +IDF EW+ A+ K ++H VPL+ Sbjct: 241 MAGYRGSPITRAALTIAPCVFVRIGELRHMQWADIDFETFEWRYTAS--KTGQEHIVPLA 298 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIA 343 +A L ++PL+G ++F +PM+ TVN ALKR G+ L HG R++A Sbjct: 299 RQVVAALIELQPLTGHSRYVFTGARSDTRPMSENTVNGALKRLGIDTQTELTGHGFRAMA 358 Query: 344 STALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD-LVKAADSGSI 401 T L E F P+VIE LAH ++ + RAYNR+ +LE RR MMQ WAD L + DS ++ Sbjct: 359 RTVLEEVHNFRPEVIELQLAHAVRDPLGRAYNRTKHLETRRKMMQVWADYLDELRDSKNV 418 Query: 402 V 402 + Sbjct: 419 I 419 >UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_ACIB5 Length = 427 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 198/391 (50%), Gaps = 8/391 (2%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL+DT + +P+ +Y+ DG+GL +K G K W FRY + K + G Y Sbjct: 25 KRRPLSDTVLANLEPESKEYRELDGEGLYFRVKPDGKKAWLFRYKKADGKW-SWLGIGTY 83 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P +S + ARK E +++ +P ++E+ R E TF ++A W + K + Sbjct: 84 PELSGAGARKKAREIIKDISQGDNPIITKQERKRQELEQNNATFEVLAREWLDTKANTWV 143 Query: 124 EDYADDIWRSLERDIFPAIGD---ISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +D +LE+ IF G SI I+ +K +Q Q +G E V R+ + Sbjct: 144 KDTMTRNKGALEKHIFAIFGKRLYTSIKPIEWMNHLKGIQ--QHQGIYEQVNRVRAMCRD 201 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A+ TG ID P + K ++ K+NM + +LP L+ + + +M R Sbjct: 202 IYDFAKVTGRIDYNPLEGLQKFLQQGVKQNMSHVSEQELPALLRAINSYP-TMDVRMGLQ 260 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + RP E EA+W E D N W IPA RMK R+H VPL A+ IL +K Sbjct: 261 LLAMLFCRPTELREAKWQEFDLNQGIWNIPAERMKKRREHVVPLPRQAITILNELKTYET 320 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 E++FPSR ++P + AL+R G G HG R IAST LN GF IEAA Sbjct: 321 NSEYLFPSRSDKSKPKSDTVFIMALRRMGYEGRQTPHGFRHIASTLLNNRGFDERHIEAA 380 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 LAHV K+ V YN++ YL+ R+ M+QW+A+ Sbjct: 381 LAHV-KDGVAGVYNKAQYLDDRKIMLQWYAN 410 >UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V414_SPHWW Length = 417 Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 211/394 (53%), Gaps = 9/394 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLT +I AAK + +L DG GLTL+++ SGSK+W+ +Y R KQ+T G +P V Sbjct: 2 PLTHIQIAAAKASNGALKLSDGRGLTLVVQPSGSKVWRLKY-RYEGKQKTLH-LGHWPKV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERWWN-VKKTSVT 123 +S+AR R +++ L+ + DP ++ + N+F VAE W ++ ++ Sbjct: 60 GISEARIRREDARKLIEEGTDPALVKRFGPVAAKVKIVAGNSFRAVAEEWLEKCEREGLS 119 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + + I R L +PA+G I I+ + ++ ++A G LE+ RRL ++ + Sbjct: 120 QVTLNKI-RWLLDKAYPALGSKPIEVIRPLDALAVLKKLEAEGILESARRLRSVLSRIFR 178 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQ 242 +A TG I+ + ++ A P+ KN+ +I + L+ + S T Sbjct: 179 FAVATGRIERDVAADLRGAIATPKGKNLAAITTAREAGVLLRAIENYSGHEITAIALECS 238 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 RP E +A W E+D + + W IP + KM R H VPLS + L + L+GG Sbjct: 239 AHLFVRPGELRQAEWPELDADEAIWAIPPEKTKMRRPHWVPLSRQMMEKLHRLHDLTGGG 298 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEG-FPPDVIEAA 360 +++FP + PM+ TVN AL+R G G + +HG R++A+T LNE G + PD IE Sbjct: 299 KYLFPCLGNDDMPMSENTVNLALRRLGFGQDQMTAHGFRAMAATLLNESGQWHPDAIERQ 358 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 LAH++ NEVRRAY R +Y +R MMQWW+D ++ Sbjct: 359 LAHIETNEVRRAYTRGEYWPERVRMMQWWSDHIE 392 >UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_PSEA7 Length = 395 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/386 (35%), Positives = 206/386 (53%), Gaps = 8/386 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +AAKPK+ Y+L D GL L +K +G K W++R+ L + + + G YP+VS Sbjct: 2 LTDAHCRAAKPKEQLYRLNDFRGLYLEVKPNGVKAWRYRF--KLAGKGSWFALGDYPSVS 59 Query: 68 LSDARKLRAESKVLLAKDIDP-QEHQKEQVRNSQEAKTNTFLLVAERWWNVKK-TSVTED 125 L+DAR E++ L+ + I+P Q Q E+++ Q++ NTF VA+ W +K VT+ Sbjct: 60 LADARDKCEEARKLVKQGINPVQNRQVERIKREQDS-ANTFEAVAKEWLALKDWEEVTKR 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 D+ L+R +FP+IG + + +I ++ + RGA + ++ + A Sbjct: 119 RRLDM---LQRVVFPSIGKMPVRQITPAHVLDILSKTAKRGAPTVAAEAKRTMSGIFELA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 T D P + KA + ++ ++ Q+ +L+ T Sbjct: 176 VATLRADNDPVWPVRKALPANKTQHKTALTTAQIGKLLTDFDNHRCGYQVNFCIQLMWWT 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 + RP EAAEA W E D + + W IPA RMK R+H VPL A+ +L + +SG R + Sbjct: 236 LARPGEAAEAEWAEFDLDKALWSIPARRMKARREHLVPLPRQAVEMLRRLHAISGDRMHL 295 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FP R N+PM++ ++ ALK G G HG R+ ST LNE G+ PD IEA LAH + Sbjct: 296 FPGRDDRNKPMSAHSIRQALKALGWSGTYSPHGTRTTGSTRLNEMGYRPDAIEAQLAHAE 355 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWAD 391 N VRR YN + YL++RR MMQ WAD Sbjct: 356 PNSVRRTYNHATYLDERREMMQAWAD 381 >UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholderiales RepID=A1WLK0_VEREI Length = 421 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 139/409 (33%), Positives = 212/409 (51%), Gaps = 19/409 (4%) Query: 8 LTDTEIK-AAKPKDAD-YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD K A P D +L D GL L + SGSK W ++Y + + + G YP Sbjct: 2 LTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYR--FDGREKRLALGVYPD 59 Query: 66 VSLSDARKLRAESKVLLAKDIDP-QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 V L DAR R +++ + +DP E Q E++ N + + TF +VA + KK S + Sbjct: 60 VPLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEA-TFEVVAREFHTTKKRSWSL 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +YA LE+DIFP +G + + +I A L++A++ V+ARGA E L + + Y Sbjct: 119 EYARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRY 178 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 TG D + ++ A K+M +I P ++ +LM +R ++TR Sbjct: 179 GIATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSA 238 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKM-------NRDHTVPLSDGALAILEMMK 296 L RP + W+E+D AS WKIP+ +MK R H VPL+ A+A+L ++ Sbjct: 239 LLFQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQ 298 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE-EGFPP 354 PL+G ++FP+ + P +PM+ TV AL+R G + HG R++A T L E Sbjct: 299 PLTGRGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISS 358 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA---ADSGS 400 DVIE LAH + AY+R++++ QR+ MMQ WAD + A A +GS Sbjct: 359 DVIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDALCEAHTGS 407 >UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholderia ambifaria RepID=Q0BEM8_BURCM Length = 414 Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/404 (32%), Positives = 211/404 (52%), Gaps = 15/404 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +I+ AK + +L DG+GL LL+K SGSKLW+++Y + + + G YP Sbjct: 2 PLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYR--IAGKENVFAIGEYPTT 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL AR R +++ L+ K + P ++E + TF V++ W K+ + TE + Sbjct: 60 SLQAARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERH 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 +I R LE D +P IG+ + I AH ++ ++ V+ RG+ +L Q ++ V YA Sbjct: 120 FGEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAV 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T D P+ + A KP ++ RP +L R + S R +LL + Sbjct: 180 ITLRADTDPASVLRGAVLKPPTEHA---RPLSREELKALFRQLPLYKSKRTTIAIRLLMM 236 Query: 247 TRP--AEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 P E ARW+EID A+EW++P ++K R H VPL A+++L ++ + G R + Sbjct: 237 LFPRTVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGY 296 Query: 305 IFP----SRIKPNQPMNSQTVNAALKRAGLGG--VLVSHGLRSIASTALNEEGFPPDVIE 358 I P +R +P+ M+ T+N AL + H R+ AST L+E G+ +V+E Sbjct: 297 ILPILHSNRKRPH--MSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVE 354 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 L+H DK+ R YN + YL +RR MMQ WAD + ++ ++ Sbjct: 355 MQLSHKDKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALT 398 >UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=cellular organisms RepID=Q3JXH9_BURP1 Length = 414 Score = 207 bits (528), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/399 (33%), Positives = 214/399 (53%), Gaps = 11/399 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + + PL DT IKA KPK A Y + DG GL L + +SGSK W++RY KQ+ + Sbjct: 6 MPKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLH-GKQQPVVTI 64 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAVSL+ AR+ ++A + P ++ R + ++ +T AE W + Sbjct: 65 GEYPAVSLTAARERARRYAEIVAGGVSPVADARKD-RGAVKS-LDTIHEFAEYWIEQQMM 122 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALE---TVRRLCQR 177 + +Y R+LE+DI+PAIG S++++ ++ ++ RGA + + R + +R Sbjct: 123 GKSAEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKR 182 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 I E YA L+ + P+ I F Q + P+++ +++ + +SI + Sbjct: 183 IYE---YAIARQLVTSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKL 239 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 +LT+ R +E EARWDE D +AS W+IPA RMK +R+H V L+ A+A+L + Sbjct: 240 AIHLLVLTMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHA 299 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDV 356 +++FPS ++P+ T+N A++ + V H R AST L+E G P D Sbjct: 300 TRTSHQYVFPSSRGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDA 359 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 IE ALAH K ++ YNR++Y ++RR + WAD V A Sbjct: 360 IEKALAHSIKG-IKGVYNRAEYADERRRITALWADFVDA 397 >UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria RepID=Q2N8A1_ERYLH Length = 409 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/402 (32%), Positives = 212/402 (52%), Gaps = 8/402 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD I+ AK Y+L D GL LL++ +G KLW+ +Y + + K + G YP + Sbjct: 3 LTDVGIRKAKAGPKAYKLSDSSGLFLLVERTGGKLWRMKYR--IDGREKKLAIGRYPEIG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR+ R ++ LA+ DP ++ Q ++ N F +A + +K + +A Sbjct: 61 LAEARRRRDAAREQLAQGKDPSREKQRQKARAKLGAENNFASLAAEFCEKRKHDGSRAWA 120 Query: 128 DDIWRSLE---RDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + E + +IG + I +I+ ++ AV+ ++++G LE+ +R Q V Y Sbjct: 121 PATAKRCEYLLSVLNSSIGHLPIADIEPADILTAVRRIESKGKLESAKRTLQLAGSVFRY 180 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 A T + + P+ ++ A P + ++ P +L+ + T+ Sbjct: 181 AVATARLKSDPTRDLRGALMNPTVTHYGAVLDPAGAGELLRAIDGYEGQPITKLAMQLAP 240 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 RP E A W EIDF+ + W IPA++ KM +DH VPLS A+AILEM L+G Sbjct: 241 HVFVRPGELRHAEWSEIDFDEALWTIPASKTKMRKDHLVPLSRQAIAILEMAHRLTGPDG 300 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 ++FPS +PM+ T+NA L+R G + +HG R++AST LNE G + PD IE AL Sbjct: 301 YVFPSVRTRKRPMSDNTINAGLRRLGYATDEMTAHGFRAMASTLLNESGKWNPDAIEGAL 360 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 AH D ++VR AY+R + ++R MM+WW+D + G+ V+ Sbjct: 361 AHGDSDKVRAAYHRGAHWKERVKMMKWWSDYLDQLREGAEVV 402 >UniRef50_B7I6Z3 Site-specific recombinase, phage integrase family n=3 Tax=Moraxellaceae RepID=B7I6Z3_ACIB5 Length = 414 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/406 (32%), Positives = 209/406 (51%), Gaps = 19/406 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDA-DYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + PLTDT+IK AK ++ +L DG GL LLI + +K W+F Y RP TK+R Sbjct: 1 MPKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIG 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG+YP VSL+DAR R E++ LLA++IDPQ +K + ++ NTF VA W Sbjct: 61 FGSYPEVSLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEW----- 115 Query: 120 TSVTEDYADDIWRSLER---DIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 +D+A+ R +R I IG I ++ ++ + + +G LET +++ Sbjct: 116 -ESKQDFAESTIRGHKRLLQVINSNIGKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKV 174 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMST 235 + ++M Y TG + + ++ A + P+ K++ ++ ++ +L++ + + T Sbjct: 175 KCGQIMRYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFIT 234 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKI--PAARMKMNRDHTVPLSDGALAILE 293 + RP E A+W +ID W+ P + K H VP+ +L Sbjct: 235 QMALKIAPYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLL 294 Query: 294 MMKPLS----GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS-HGLRSIASTALN 348 +K L+ G E++FPS +PM+ T+N AL+R G V HG R+ A T L Sbjct: 295 KIKELTYDPDGESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILE 354 Query: 349 EE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E +P ++IE LAH K+ RAYNR+ +LE+RR MMQ WAD Sbjct: 355 EVLNYPIEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYC 400 >UniRef50_A7MTK6 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MTK6_VIBHB Length = 290 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/274 (37%), Positives = 160/274 (58%), Gaps = 1/274 (0%) Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A+ + L I+P +GD+ + EI+A + A++P++ +G LETV R +M +A Sbjct: 8 AEGYRQKLNLHIYPKLGDVPVKEIRASMWIDAMRPLERKGKLETVVRTTALFRRIMNFAV 67 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 N I P ++ F+KP++ N I +LP L+ + +++ + + LF +QL T+ Sbjct: 68 NNDYIHNNPIGSMRDVFKKPKRGNFSCIDIKELPTLLTMVVQSTMRPANKLLFEFQLHTL 127 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 TR EA ARW+E F W +PA R K H +P++ ++IL+ K LS G E++F Sbjct: 128 TRSNEATGARWEEFSFEEKVWYLPAERAKNRLMHKIPMTPEVISILKAAKSLSSGSEYVF 187 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAALAHVD 365 PSR +P++S+T+NAA KR GL G + SHG RS+ ST L E F VIEA L+H D Sbjct: 188 PSRTSLKKPVHSETINAAFKRLGLSGKMTSHGTRSLGSTILYERTDFESVVIEAVLSHTD 247 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 ++ VR AYNR+ + E+RR ++WW+ + +G Sbjct: 248 RDGVRDAYNRNKFFEKRRAALEWWSKHIVGLTNG 281 >UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria RepID=D1D4Y4_NEIGO Length = 406 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/412 (32%), Positives = 212/412 (51%), Gaps = 28/412 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ PL+ ++K AKP+D Y+L DG GL L + +G + W+ + + +Q S Sbjct: 9 MAKIITPLSANQVKNAKPRDKLYKLSDGGGLALWVYPTGRRSWKLSFMQDGRQQTI--SL 66 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP SL++AR+ R E + + E V N + F VA W+ Sbjct: 67 GRYPDFSLAEAREWREE--------VRRKRAHGENVVNKKVRADFAFEKVARDWFVRWSK 118 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +E YA + R+ ER +FPAIG++ I +++ +V ++ ++ARG ++T+R+ + Sbjct: 119 GRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKM 178 Query: 181 VMIYAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSIRPDQLPQLMHTMRT----------A 229 V +A +G++D P IG FE+ + KNM ++ P +LP+L+ + Sbjct: 179 VFAFAVGSGMMDINPVAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRV 238 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 I TR W LLT+TR EAA W E+D W+IPA R K R H VPLS Sbjct: 239 HIHPVTRFCIYWLLLTMTRIREAALMEWSELD--GEVWRIPAERKKERRGHDVPLSRAMR 296 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L+ + L+ F+F S + +N ++ + A++R+GL +HGLRS+A T L E Sbjct: 297 WVLDQARGLNVNGRFVFES-VNFQGHINKESPHVAMRRSGLD--TTAHGLRSLARTYLRE 353 Query: 350 E-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA-DLVKAADSG 399 DV E LAH + AYNRS+ E+R+ + W D+++ AD+G Sbjct: 354 VLKVYNDVAEKLLAHSLGTRTQTAYNRSELWEERKDAPERWGNDVLRLADNG 405 >UniRef50_B9D1P3 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D1P3_WOLRE Length = 395 Score = 204 bits (518), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 128/397 (32%), Positives = 203/397 (51%), Gaps = 17/397 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD EI+ KPKD Y+ DG GL + + SG K + Y P + + + G +P Sbjct: 7 PLTDREIRGLKPKDKIYKKCDGRGLYIFVDPSGRKYFALEYKSPADNKIKRLNLGDFPEF 66 Query: 67 SLSDAR--KLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 SL+ AR + + E KV D+ + EQ F +A+RW +K SV Sbjct: 67 SLAMAREERFKLEQKVRDGIDVKHESEINEQA---------NFKKLAQRWLEIKAASVEP 117 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + R LE +P + SIT+I +++ ++ ++A+G+LE ++RL +N++ Sbjct: 118 NTLNRDKRLLEMYAYPFFENRSITDITVTDVIEILKKIEAKGSLEMMKRLYSLLNQIWQS 177 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCLFMWQL 243 A + + S+N F+K ++KN ++ + + L ++ S + T+ + + Sbjct: 178 AYYIAPNNVIASINYRFTFKKVKEKNYATLTKNADIKALWQSIDEYSGDIRTKYALKFAV 237 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT RP A+W+ IDF+ IPA MKM T+PLS AL +L+ K + + Sbjct: 238 LTALRPFNIRSAKWEYIDFDEGVISIPAGDMKMREAFTLPLSRQALELLKEYKGYNLDQI 297 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE----EGFPPDVIE 358 ++F S + M+ T+N AL+R G +VSHG R++ ST NE G D+IE Sbjct: 298 YLFGSLYGSARYMSENTLNVALRRMGFSKDEIVSHGFRAMFSTVCNENIDAHGLNFDIIE 357 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 LAH +++R AYNR+ L Q R MMQWWAD + A Sbjct: 358 KCLAHKGTDKIRAAYNRAQNLAQMRAMMQWWADYLDA 394 >UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria RepID=B1Y3M2_LEPCP Length = 433 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 138/418 (33%), Positives = 204/418 (48%), Gaps = 24/418 (5%) Query: 13 IKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDAR 72 IK A A +L DGDGL L ++ +GS W++RY + S G YP SLS AR Sbjct: 16 IKRAMKAQAGERLTDGDGLRLDVQPTGSAWWRWRYR--FGGKEGMLSLGTYPDTSLSAAR 73 Query: 73 KLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT------------NTFLLVAERWWNVKKT 120 R E++ LA I+P E +K+ TF A W Sbjct: 74 GRRDEARERLAAGINPSEARKDDKAAQALKAEAARLAAAGLPGPGTFEHAAREWHARMAP 133 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 S +E +A + L D+FP IG ++ E+ L+K + ++ARGA+ET R + Sbjct: 134 SWSEGHAGKVLALLVNDLFPFIGTSALAELTPPELLKHARRIEARGAVETAYRALKAAGA 193 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLF 239 V + G D+ P+ ++ A P ++ +I P +L +L+ + + R Sbjct: 194 VFRHGVQNGYCDSDPTRDLKGAIVLPVPEHRAAITDPARLGELLRAIDGYQGTPVVRSAL 253 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM-------NRDHTVPLSDGALAIL 292 L RP E +A W E D +A+ W IPAARMK DH VPL+ A AIL Sbjct: 254 ALAPLVFLRPGELRKAEWAEFDLDAAVWTIPAARMKGRLKAKLNGPDHVVPLAPQAAAIL 313 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEE- 350 ++PL+G +++FP+ + P++P++ V +AL+R G + HG R+ A T E Sbjct: 314 RDLQPLTGAGKYVFPNPLTPDRPLSDNGVLSALRRMGFDKDEMTGHGFRATARTIAAERL 373 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 P V+EA LAHV + + RAYNR+ YL+QRR MM WAD + G+ V+ SK Sbjct: 374 KIDPVVLEAQLAHVVADALGRAYNRTQYLDQRRDMMTRWADYLDRLRKGAEVVDLTSK 431 >UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUF6_ARCB4 Length = 405 Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 134/411 (32%), Positives = 224/411 (54%), Gaps = 32/411 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ KPLTDTEIK AK K+ DY+L DG+ L L++KS+G+K ++F + TK+R SF Sbjct: 1 MAKIVKPLTDTEIKKAKAKEKDYKLSDGENLYLVVKSNGTKFFRFDF--SYTKKRKSMSF 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL +AR+LR ++K L ++I+P E ++S +TF + E+W + + Sbjct: 59 GIYPDISLKEARELREKAKEQLKQNINPIE-----AKSSNFGNISTFKYITEKWLKLMTS 113 Query: 121 S---VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 VT + ++ L ++PAIGD I+ I+ ++ +Q +Q + E R+ Sbjct: 114 EWKHVTYELNEN---RLRMHVYPAIGDKPISSIEILDILNIIQKLQEKEYFEIAERILNV 170 Query: 178 INEVMIYAQNTGLI--DAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRT------ 228 I + YA G + + ++ F K + ++ + +++ +L+ +++ Sbjct: 171 IERIYKYAVTYGYTKHNIIADIDKRTVFAKKIVIHRATLTKENEIKELLKDIKSYGELYK 230 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 A IS + L + L + RP W+E++F IPA +MK N+D +PLS A Sbjct: 231 ADIS-TIYALNIAPYLAL-RPYNIRLLEWNEVNFEKEYLDIPANKMKTNKDFVLPLSKQA 288 Query: 289 LAILEMMKPLSGGR-EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST-- 345 L IL+ +KP S R +++FPS +P + T+N AL + G + SHG R++ ST Sbjct: 289 LEILKTIKPYSFDRSKYVFPSPTSNLKPFSDATLNHALMKLGYKDKITSHGFRAMFSTIA 348 Query: 346 --ALNEEGFPPDVIEAALAHVDKNEVRRAYNRSD---YLEQRRPMMQWWAD 391 + E GF D+IE+ LAH + N+++ AYNR Y ++++ +MQWW D Sbjct: 349 HEKIKEHGFHSDIIESCLAHAETNKIKAAYNRESKMKYYDEKKGLMQWWTD 399 >UniRef50_Q0C1T8 Site-specific recombinase, phage integrase family n=2 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1T8_HYPNA Length = 409 Score = 203 bits (517), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 126/394 (31%), Positives = 205/394 (52%), Gaps = 9/394 (2%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T PLTD +I++ KP + DG L + ++ +GSKLW+F Y ++ + G YP Sbjct: 14 TMPLTDLKIRSLKPDGKPRRYTDGGNLFIEVRPNGSKLWRFAY--KFDGKQKLMALGTYP 71 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW--NVKKTSV 122 +SL+ AR+ RAE++ LL + IDP + K Q +TF +A N ++ Sbjct: 72 EISLARAREKRAEARALLIEGIDPMQQAKVNKLERQALTEHTFSAIAAELLDKNRREGLA 131 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + W L +GD+ +T+IK ++ ++ V++ G ET RRL I++V Sbjct: 132 GATLSKKSW--LVGIANADLGDLPVTQIKPTHVLVPLRKVESEGNYETARRLRAVISQVF 189 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMW 241 YA T + P+ + A P+ + P+I ++ L+ ++ ++ T+ Sbjct: 190 RYAVATARAEHDPTAGLRGALIAPKVTHRPAIVDREKFAGLIRSIWAYDGAIETKAGLQL 249 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP E + W E D W IPAAR KM R+H PLS A+ IL+ + ++G Sbjct: 250 MALLYPRPGELRLSTWGEFDLRKRTWTIPAARTKMRREHKKPLSGAAVEILKRLHAVTGH 309 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEEG-FPPDVIEA 359 ++ S++ +P++ T+N +L+R G + SHG R+ AS+ LNE G + PD IEA Sbjct: 310 EPYVLVSQLSRGKPISENTLNGSLRRLGYAKEEMTSHGFRASASSLLNESGKWHPDAIEA 369 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LAH+ +++R+AY+R+ Y +QR M WWA V Sbjct: 370 ELAHMGADQIRKAYHRATYWDQRVEMADWWAGEV 403 >UniRef50_Q0BR52 DNA integration/recombination/inversion protein n=6 Tax=Alphaproteobacteria RepID=Q0BR52_GRABC Length = 380 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 199/355 (56%), Gaps = 20/355 (5%) Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 SFGAYP VSL++AR RA++KV+L + DP K + + TF A +W + Sbjct: 13 SFGAYPGVSLAEARLRRAKAKVVLGEGGDPGAGNKPRTQM-------TFEEAARKWHGHR 65 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 ++ +A + LERD FP +G + ++ I ++ V+ V+ARGAL+ RRL Q + Sbjct: 66 LDALDAGHATRLLTRLERDAFPVLGKLGLSVITPTDVLAMVRRVEARGALDVSRRLKQHV 125 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTM------RTASI 231 +++ +A G + P+ ++G+ + KP+ ++MP I +LP L+ + T Sbjct: 126 SQIYRFAIAHGWAERDPAEHLGQLLKPKPRTRHMPRIGRSELPALIRAIDGYDGEETPRR 185 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDE---IDFNASEWKIPAARMKMNRDHTVPLSDGA 288 TR ++ LLT R E ARW+E +D + W++PA RMKM R+H VPL+ Sbjct: 186 RAVTRAALLFTLLTWVRTNETRHARWEEFEDLDGASPVWRVPAERMKMVREHVVPLAPAV 245 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 +A+L+ ++ S +++F KP+QP++ T+ A R G G HG R +AST N Sbjct: 246 VALLQEVRVYSLA-DYVFVGE-KPDQPISQNTMIYACYRMGYRGRQTVHGFRGLASTWAN 303 Query: 349 E-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 E E + PD IE ALAHV+++EVR AYN + YL RR M++ WA +++ S + V Sbjct: 304 EAECYQPDWIEMALAHVERDEVRGAYNAALYLSPRRRMLEDWAGFIQSHLSAAPV 358 >UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VQL7_POLNA Length = 413 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/410 (33%), Positives = 209/410 (50%), Gaps = 16/410 (3%) Query: 7 PLTDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 PLTD K K A + DG G+ LL+ +G K W+ Y +R + G YP Sbjct: 2 PLTDIFTKNTKHSGAPAGDKHTDGGGMYLLVTKAG-KYWRMNYR--FAGKRKTLALGVYP 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 AVSL++AR+ R +++ LLA+DIDP ++E + + A NTF VA + +K +E Sbjct: 59 AVSLAEARQGRDKARKLLAQDIDPSAAKQEDRQATATAAANTFEAVAREFHALKAGGWSE 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A R E +FP IG + ++ IKA TL+ A++ V+ +G L T + L +V Y Sbjct: 119 GHATKWLRMNELYLFPHIGTLPLSTIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFRY 178 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 TG ++ P V++ A + K+ +I P + ++ + + T Sbjct: 179 GVQTGRCESNPGVDLKGALQPHIAKHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLSA 238 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD-------HTVPLSDGALAILEMMK 296 L RP W ID + IPA MK ++ HTVPL+ AL +L+ +K Sbjct: 239 LFFQRPGNIRAMEWAWIDLDGQMLTIPAKSMKSSKHEKANGKPHTVPLARQALDVLKSIK 298 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE--EGFP 353 L+G ++FP +PM+ T+NAAL+R G V+HG R++A T + E G P Sbjct: 299 QLTGHGRYVFPGARTGERPMSDGTINAALRRLDYGNNEHVAHGFRAMARTMMAERLSGIP 358 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 D++EA L H K + AY+RS+YL QR+ MMQ WAD + +G+ V+ Sbjct: 359 QDMVEAQLGHGKKGPLGSAYDRSEYLPQRQQMMQTWADYLDKLRTGAEVI 408 >UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QA94_PSYCK Length = 413 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/401 (31%), Positives = 205/401 (51%), Gaps = 11/401 (2%) Query: 7 PLTDTEIKAAKPKDADY------QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 PLT T I +P + DG+GL L ++ +G K W YR KQ+T + Sbjct: 2 PLTHTVINKLQPSSTSIDTKRPDKHSDGNGLQLWVRYTGVKSW-ISAYRWQGKQQT-LTI 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL +AR+ E K L+A ++P++H+KEQ + SQ+ N F +A+ W+ +KT Sbjct: 60 GTYPVMSLQNARQRNIEIKRLIADGVNPKDHKKEQ-QASQDG-LNIFDNIAQSWYAERKT 117 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + E + + RD+ P+IG +I +I A ++ + V++RGA E RR + + + Sbjct: 118 YLAESTFTRNYSAYMRDVKPSIGQKNINDITAPDILAIGKAVESRGANEMARRTIREVGQ 177 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A GL P+ ++ +A + + N I QLP+L+ + + + Sbjct: 178 IFKHAIRNGLATHNPATDLAEAIKPHKTTNHHRITSQQLPKLLTDINAYQGDVLVKLGLW 237 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + T R E W EID+ W+IPA +MK R H VPL+ A+AILE +K L Sbjct: 238 FLCYTFVRTNEIRFMEWSEIDYKHGLWRIPADKMKAKRLHIVPLAPQAMAILEQIKELGF 297 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +++F + +P + AL G G + HG R +AST L+E+ F + IE Sbjct: 298 SDQYVFFN-TSTRKPYSQSAFINALWNMGYKGKMTGHGFRGLASTTLHEKEFMHEAIELQ 356 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 LAH +N++ AYN + +L R MM WA+ + A +G + Sbjct: 357 LAHDRENKISAAYNGAQHLPYRIDMMHQWANFIDDAYAGKL 397 >UniRef50_C8NCE3 Phage integrase family site-specific recombinase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCE3_9GAMM Length = 401 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/395 (34%), Positives = 203/395 (51%), Gaps = 13/395 (3%) Query: 8 LTDTEIKAAKPKDADYQLY-DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT+T+ + A D + + Y DG GL L + S G K W+ Y P +K++ SFG YP V Sbjct: 3 LTETQCRTAAAPDKNVRKYFDGGGLCLQVTSDGKKYWRLYYRMPGSKKQQTVSFGVYPKV 62 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW----NVKKTSV 122 SL AR+ R E K+L+A+ IDP+ K+ ++ A NTF VA+RW VKK Sbjct: 63 SLKQARQRRDEVKLLIARGIDPKLAAKQLRQDRTVALENTFADVAKRWLEHRAEVKKWGK 122 Query: 123 TEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 A RS LER ++P IGD +TEI+ +++ +Q +QA G +ET +L +V Sbjct: 123 QHQRAT---RSMLERYMYPRIGDYPVTEIEPTQILRVLQELQAAGKIETSHKLLSATTQV 179 Query: 182 MIYAQNTGLIDAV-PSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLF 239 YA T I P+ ++ + + I P ++ +L+ + + S R L Sbjct: 180 FRYAMITIRICKYNPAADLSELLVTGKSVPFRHITDPGEIGRLLVALDEYTGSPQARGLA 239 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD-HTVPLSDGALAILEMMKPL 298 L TRP E RWDEIDF W+ ++ + VP S A I+ ++ + Sbjct: 240 RLHPLIFTRPTEIRLMRWDEIDFEQRLWRRSDDETVRRKNVNAVPFSRQAWEIIAGLRLV 299 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 +G +++F + I N+P ++ LK G +V HG R AST L+ + + +E Sbjct: 300 TGRTDYVFCN-IHRNKPFSAGAEGKVLKSIGYHEKIVPHGWRHTASTLLHNQDYDSIWVE 358 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 L H DKNEVR YN +DYLEQRR M+Q WAD + Sbjct: 359 KQLGHTDKNEVRGTYNHADYLEQRRKMLQEWADYL 393 >UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZI9_ACILW Length = 401 Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/411 (30%), Positives = 200/411 (48%), Gaps = 37/411 (9%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ +++ AK K+ Y L D DGL+L ++ +G K W +RY T +R + G YP +S Sbjct: 3 LTEIKVRQAKSKEKIYFLADDDGLSLKVEPNGRKSWSYRYSLAGTNKRPRMKLGEYPVMS 62 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED-- 125 L +AR +R E K + + + K+ ++ TF + E W K + ED Sbjct: 63 LKEARSVRDEYKF---NNYENKPLHKKYIK--------TFQDICEEWLEFKIKNSFEDEP 111 Query: 126 ---YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + L++D++P IG + EIK + LVK ++ +++R E V++ +N++ Sbjct: 112 RCGVIQLAKKCLDQDVYPNIGLMPFIEIKRYDLVKIIKKIESRNVKEPVKKAYSYLNQIY 171 Query: 183 IYAQNTGLIDAVPSVNIGKAFEK-----PQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 YA G + NI K KKN P + D+L + + + + Sbjct: 172 DYAVAMGYCE----YNIAHGLHKILVNNKIKKNYPHLNSDELSNFLAKLNQINTDPIIKK 227 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----------DHTVPLSDG 287 +++L T R E D + WKIPA +K R D VPLSD Sbjct: 228 ALLFKLYTGVRGGELLLCEPHHFDLDKKIWKIPALHIKQYRRKVILGHDIPDFFVPLSDQ 287 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTA 346 AL +++ S G +++F S N+P++ T+N +++ G L SHGLRS ST Sbjct: 288 ALEVVKSALVWSHGEKYVFSSPRNNNKPIHFNTLNLIIRKMGYTKNELTSHGLRSTFSTI 347 Query: 347 LNEEG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 LNE G F + IEA L+H DKN+ R +YN ++Y QR MMQWW D + + Sbjct: 348 LNESGLFQSNWIEAQLSHTDKNKTRASYNHAEYFNQRMEMMQWWGDFIDSC 398 >UniRef50_B9NUX0 Site-specific recombinase, phage integrase family n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NUX0_9RHOB Length = 404 Score = 201 bits (510), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 203/392 (51%), Gaps = 13/392 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +K +P Y+ D GL +L+K +GSK W +YR L KQ+ S+G YP + Sbjct: 2 PLTDIALKNMQPSGRAYKRSDAHGLYILVKPNGSKHWHL-HYRFLGKQKV-MSYGPYPLI 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTF-LLVAERWWNVKKTSVTED 125 SL +AR+ R + L + IDP +KE+ S+ A+ F +L AE + + + E Sbjct: 60 SLKEAREKRDRDRKFLIEGIDPMVVKKERKLASERAQRGRFDILAAE----LLEKNRVEG 115 Query: 126 YADDIWRS---LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 A+ + L + +++ EI ++ ++ + G LET RL I EV Sbjct: 116 RAEQTLKKKAWLVEMANKDLAKLAVMEITPSDVLAVLKKQEKAGNLETASRLRTTIGEVF 175 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMW 241 YA GL + P++ + A + + ++ +I P++L +L+ ++ S Sbjct: 176 RYAIACGLTENDPTIPLKGALVQKRPRSRSAITNPERLGELLCSIENYSGYRVVALGLRL 235 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP E A+W+E D A +W IPA RMKM + H PL A+ IL ++ +S Sbjct: 236 LALLHVRPGELRFAKWEEFDLEAGKWTIPAERMKMRQPHVAPLPTQAIDILRELQRISHP 295 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEEG-FPPDVIEA 359 + PS+ + P++ T N AL+ G + +HG R+ ST NE G + PD IE Sbjct: 296 DGMVLPSQRRRIDPLSENTFNKALRMMGYSKEEMTAHGFRATFSTLANESGEWNPDAIER 355 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 ALAHVD NEVRRAYNR+ + E+R M QWWAD Sbjct: 356 ALAHVDSNEVRRAYNRAAFWEERVEMAQWWAD 387 >UniRef50_A4VPC8 Site-specific recombinase, phage integrase family n=6 Tax=Proteobacteria RepID=A4VPC8_PSEU5 Length = 455 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/407 (30%), Positives = 213/407 (52%), Gaps = 31/407 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +IK+ KP D D++L DG GL LL+K +G KLW+++Y L + + G++P VS Sbjct: 58 LTDAKIKSVKPTDRDWKLSDGGGLFLLVKPTGCKLWRWKYR--LQGKENLFAIGSFPQVS 115 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNS--------QEAKTNTFLLVAERWWNVKK 119 L++AR R +++ L+ + I P H+++QV+ + A+ ++F VA+ + Sbjct: 116 LAEARTAREKARALVKQGIHPA-HERQQVKQRNLEALAERKRARESSFAKVAQAY----L 170 Query: 120 TSVTEDYADDIWRSLERDI----FPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 T + +A +R+ E I P + +++I + ++ + GA + + Sbjct: 171 TEIKPVFAYSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKTHGAWAAIH-VK 229 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 ++ + +A GL++A P ++ P ++ ++ +Q+ + +R T Sbjct: 230 GDLSAIFEFAVVRGLVEANPIPSLRGLLRAPASESKAAMTREQIQKFYQALRGYRGYPET 289 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 LT RP EAA+A W+E DF + W+ PAA+MK RDH PLS A+A+L+ + Sbjct: 290 ALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARRDHISPLSTQAIAVLKGL 349 Query: 296 KPLSGGREFIFPSR-----IKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 + ++GG ++FP R PN+ + A++ LG H R+ ST NE Sbjct: 350 QRITGGGRYLFPHRSGKGFTTPNR------LTYAMRDMNLGRGTTPHCWRTTFSTWANEN 403 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 GF PD IE LAHV+ N+VR YN++ L+QRR ++Q WA + A+ Sbjct: 404 GFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSTAE 450 >UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=Q48NQ4_PSE14 Length = 391 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/397 (32%), Positives = 205/397 (51%), Gaps = 15/397 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ AKP +L D GL L + + GSKLW++R+ L + + GAYP VS Sbjct: 3 LTDLKIRQAKPGKTSSKLTDSGGLYLEVTTGGSKLWRYRF--RLAGKENTYAIGAYPEVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQE-HQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 LSDAR R ++ L+ +P Q E+ + E + NTF +V++ W + T+ Y Sbjct: 61 LSDARTERDAARDLVKSGRNPAHVRQTEKAQQLTENR-NTFKIVSQEWIEKRLAQRTQKY 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D I R+ D++P IG + + EI A +++ + + R A + Q I+ V Y Sbjct: 120 RDQIERAFVNDVYPRIGRLPLREITAAQVLEIITAMDRRNATTLALMVRQWISAVFCYGV 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR----CLFMWQ 242 T D+ P+ + A + + + RP L +L R R L++ Sbjct: 180 ATLRADSDPASAVRGAIRRNEVNHS---RPMSLIELREYFRAVKTYGGHRRTVIALYLLP 236 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +L + R E A W E D +A+ W IPA RMK + H VPL + ALA+L ++ ++ G Sbjct: 237 ILFV-RTIELRLAEWSEFDLDAALWTIPARRMKKRKIHLVPLPESALALLRELREITAG- 294 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAAL 361 +FP P +P+++ T+N AL+ L G H R+ AST L E E + DVIE L Sbjct: 295 NLLFPGMRHPKEPISATTLNRALEYMDLKG-WHCHDFRATASTHLYESELWSSDVIEFQL 353 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 AHV++ + + AYN + YL R+ +MQWW + + ++S Sbjct: 354 AHVEQKKSKAAYNHASYLPARKALMQWWDNYIFGSES 390 >UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW0_9NEIS Length = 394 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/392 (32%), Positives = 197/392 (50%), Gaps = 11/392 (2%) Query: 8 LTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTD + K P D QL DG GL L I + G + W+ +Y +++ Q G YPA+ Sbjct: 3 LTDNQCKHTPPPDKGVKQLSDGGGLYLQIDAKGRRYWRIKY--TYNQKQHTQHLGIYPAM 60 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK--KTSVTE 124 L AR R + K+LL++ I+P+ HQ++Q R Q+ TNTF VA +W K K Sbjct: 61 PLKAARMERDKIKLLLSQGINPKTHQEQQQRAEQKRITNTFEHVARKWHTTKAEKGDWKP 120 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A + R +E + P +G +SI +I+ ++ A+Q V+ G + T ++ + + + Sbjct: 121 AHATRVLRQIELYLIPPLGSLSIADIEPLDILHAIQNVEHTGKIATANKVYDIAHAIFSF 180 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPS---IRPDQLPQLMHTMRTASISMSTRCLFMW 241 A L + + + Q K P +L L+ + + S + L Sbjct: 181 AARMKLCPYNAAAELKPELQ--QAKATPYRHVTDTGELTALLQAIDGYTGSPQVKVLLQL 238 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP+E +W +IDF A+ + A MK H VPLS ALA+L +KP++G Sbjct: 239 APLVFARPSELRLLKWADIDFQAACYHKAAHEMKNGIAHIVPLSRQALALLSSLKPVTGH 298 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 E++F ++ +P++ AL R G + HG R AST L+E+ + D IE L Sbjct: 299 YEYVFHNKAA-GKPLSEAAARKALSRIGWLDKVTLHGFRHTASTLLHEQQYSSDWIERQL 357 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 AH D N R +YN + +LEQRR MMQ WAD + Sbjct: 358 AHKDPNTTRASYNFAKHLEQRRQMMQEWADFL 389 >UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR6_9SPHN Length = 428 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 200/409 (48%), Gaps = 17/409 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I++ P + DG GL + + +G + W F Y R KQ++ G YP +S Sbjct: 2 LTDTLIQSIIPAARPIKKADGGGLNICVLPNGRREWCFSY-RFHHKQKSITG-GDYPLMS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 + AR R E K L+ DP + K Q++ +A+ TF +A W K+ ++ YA Sbjct: 60 IDRARVWREEMKAALSAGKDPA-NIKRQLKYEDQAERTTFRQLAYEWMVAKRPGWSDRYA 118 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I R LE DIFP IG +S+ I ++ A++ ++ RGA E R+ +E+ + Sbjct: 119 GVIERRLEADIFPTIGKLSVRSILPRDMLGALKCIEDRGATEMAHRVRAYCSEIFRFGIP 178 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G + P ++G K S P +LP + + S + W +LT+ Sbjct: 179 DGRVLTDPCRDLGTVMRKRAAVTHRSKIPIKELPHFYAALNADTGSRLSHLALRWTILTM 238 Query: 247 TRPAEAAEARWDEID-FNASE--WKIPAARMKMNRDHTVPLSDGALAILEMMKPLS---- 299 R E A+W E + E W+IPA RMKM +H VPL A+A+L +K L+ Sbjct: 239 VRTTETRHAQWSEFEGLGGPEPLWRIPAERMKMRVEHLVPLPPQAVALLREIKELNVYGK 298 Query: 300 -GGREF---IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPP 354 G F +FP ++S + L+R G+G HG RSIAST LNE G F P Sbjct: 299 YGNERFGQYLFPVIGNQGDTISSNRMLVLLQRLGVGDKATVHGFRSIASTVLNETGLFKP 358 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 D IE LAHV VR YN + YL RR M++WWAD + A+ S + Sbjct: 359 DWIELQLAHVPGG-VRAVYNAARYLSHRRQMLEWWADYLDKAEQASAAI 406 >UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales RepID=A9I0E1_BORPD Length = 536 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 135/416 (32%), Positives = 210/416 (50%), Gaps = 27/416 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L++T+IKAAKP +Y L DGD L L ++ +G K W +RY + + K G YP V+ Sbjct: 103 LSETQIKAAKPGQKEYMLNDGDNLYLRVRITG-KAWIYRYMK--DSKPIKLGMGPYPEVT 159 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV--TED 125 L+ AR E+ A +DP+E +++ ++ A+ +TF L+A W K +E Sbjct: 160 LAQARTKAYEANSQRANGLDPKEVREQLAEQTRIARLHTFELLARAWHASAKKDREWSEG 219 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA + R LE IFP +G I I +V+ + + RG LET +R+ + + V YA Sbjct: 220 YAQKVIRHLEIHIFPWVGHKPIEMILPTEIVRCLHRPKDRGNLETAQRVREAVQHVYQYA 279 Query: 186 QNTGLIDAVPSVNI----GKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFM 240 + G ++ PS N P+ ++ +I P QL QL+ +R+ TRC Sbjct: 280 VDVGALE--PSKNFVNKNTGGLPPPRSRHFAAITEPAQLGQLLRDIRSYHGQFITRCALR 337 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM----NRD-----HTVPLSDGALAI 291 + RP + A W++I W+ P +MKM RD H VPL AL I Sbjct: 338 LAPMMFQRPGQIRLADWEDISLEVELWRCPPEKMKMREWQKRDSRTPAHIVPLPRQALEI 397 Query: 292 LEMMKPLSGGREFIFPS---RIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTA 346 L + PL+G +F S R + ++ ++ T+NAAL+ G + HG R+ A T Sbjct: 398 LRELHPLTGPTGPVFRSMSRRSEKSRYISDNTINAALRTMGYDTKEEITGHGFRATARTM 457 Query: 347 LNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 + E G+ PDVIE LAH E+ +Y+R+ ++ QR+ M+Q WAD + + G + Sbjct: 458 IREHLGWEPDVIERHLAHTSDEELGSSYDRAAFIAQRKAMVQQWADFLDELEVGQM 513 >UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetobacter RepID=C6RSU9_ACIRA Length = 426 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 133/410 (32%), Positives = 220/410 (53%), Gaps = 26/410 (6%) Query: 1 MARKTKPLTDTEIKA-------AKPK--DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPL 51 M ++ LTD++IKA P D +L DG GL LLI+ +G+ +W+F Y RP+ Sbjct: 1 MPKQVISLTDSKIKAFLRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPV 60 Query: 52 TKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQ-EHQ--KEQVRNSQEAKTNTFL 108 +K+R + G YPA+SL+ AR+ R + + LLA+ DPQ E Q +E+ R Q+A TF Sbjct: 61 SKKRNTMTVGNYPAMSLAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQA---TFK 117 Query: 109 LVAERWWNVKKTS-VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 VAE + + ++ + T D I+ L RD +G++ I++I L K ++ + +G Sbjct: 118 SVAELYKSKQRLAEATVKRNDGIFEKLYRD----VGNMPISDITPRDLAKVIEKDENKGH 173 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTM 226 +E+ R+ + ++V +A GL + + ++ + +K + ++ P L+ + Sbjct: 174 IESAMRIRSKASQVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDI 233 Query: 227 -RTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM--KMNRDHTVP 283 S + + L R E A+W +I+F + W ++ K DH VP Sbjct: 234 DHYESQLVHVKLALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVP 293 Query: 284 LSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV-LVSHGLRSI 342 LS A+AIL+ + +F+FPSR ++P++ ++N AL+R G G + HG R+I Sbjct: 294 LSTQAIAILKEALNFTNNSDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAI 353 Query: 343 ASTALNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 A T L+E FP D+IE LAH ++ RAYNR+ +L++RR MMQ W+D Sbjct: 354 ARTLLDEVLEFPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSD 403 >UniRef50_D0CDZ4 DNA integration/recombination/inversion protein n=4 Tax=Acinetobacter RepID=D0CDZ4_ACIBA Length = 402 Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 139/407 (34%), Positives = 206/407 (50%), Gaps = 24/407 (5%) Query: 2 ARKTKPLTDTEIKAAKPK-DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 R L+ ++K AKP + Y+L DG L L I SGSK W F Y RP +R S Sbjct: 3 TRGINKLSALQVKKAKPDPNKMYKLSDGGNLYLRIDQSGSKYWIFNYTRPFLGKRNDLSL 62 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL DAR +R + K L+ + IDP + E Q+ NTF ++AE W + ++ Sbjct: 63 GTYPEVSLEDARTIRDKYKKLIKQGIDPAMERIETKSQKQKEAENTFRVIAELWLHKREL 122 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTL-VKAVQPVQARGALETVRRLCQRIN 179 +D ++ R L D++P I +++ ++ L K + + RGAL +RL +N Sbjct: 123 EQKQD--EETIRRLNHDVYPYISELTFPQLTLEILETKVFKRIVERGALSVAKRLKSDLN 180 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCL 238 ++ A+ LI P +I KPQ N P++ +Q L +++ + S + RCL Sbjct: 181 QIFKSARKKKLIQYNPIEDI--ELPKPQAGNFPAVTEEQDLAPMLNKIWNYS-KLYPRCL 237 Query: 239 FMWQ------LLTITRPAEAAEARWDEIDFNASE---WKIPAARMKMNRDHTVPLSDGAL 289 Q +LT RP E R + +F E +K A++ K + H VPLSD A Sbjct: 238 LTTQVALKISVLTFQRP---GEIRMLKKEFYYREERCFKFTASKTK--QLHIVPLSDQAF 292 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 ++E + L E+IF R ++ T+N+ALKR G GG +HG R+ A T L+E Sbjct: 293 DLIESIIDLHPYSEYIFVGR-DGKTVISDNTINSALKRLGYGGEQTAHGFRATARTMLDE 351 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 D IE LAH K+ AYNR+ +L RR MMQ WAD +++ Sbjct: 352 ILEQRVDFIEHQLAHKVKDNNGTAYNRTKFLNNRREMMQEWADYLES 398 >UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepID=Q1Q875_PSYCK Length = 452 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 126/410 (30%), Positives = 208/410 (50%), Gaps = 23/410 (5%) Query: 8 LTDTEIKAAKPKDADY-----QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 L+D +I+ KP D + D GL LL++SSG++ W YR KQ+ K + G Sbjct: 2 LSDAKIRKLKPTDKCTPSRPDKYSDQQGLQLLVRSSGTRTW-VSAYRFDGKQQ-KTTLGT 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT-NTFLL--VAERWWNVKK 119 YP + L++AR A+ K L+A I+P+ +++ +++AKT N + + + ER NVK Sbjct: 60 YPQMGLAEARVANADIKALVANGINPKNKKRQDKLANEQAKTFNDYAVEWLEERERNVKP 119 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQAR----GA--LETVRR 173 + +DY + +D+ P+ I++ ++ +++R GA E RR Sbjct: 120 RTYQQDY-----NRMHKDVIPSFEGIALKDVTFEDCKLMADNIESRTNNEGASPREVTRR 174 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISM 233 + ++ A LI+ + + + + K + K+M + +LP+L+ + Sbjct: 175 TIDLVGNILRRAMRERLIEVNHTDGLKELYPKAKTKHMKHVELSELPKLLQDIEGYHGHD 234 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 TR + + R E +W+ IDF W++ +K+ R H VPLSD LA+LE Sbjct: 235 QTRLGMKFLAYSFCRTIELRMMKWEHIDFPNRLWRVDIDNLKIARKHVVPLSDQMLAVLE 294 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFP 353 MK ++G E++F +QP + + +N AL G GG HG R IAST LNE G+ Sbjct: 295 EMKHITGQYEYVF-YHTGMHQPYSEEFINNALDILGYGGKQTGHGFRHIASTNLNELGYM 353 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA-DSGSIV 402 D IE +AH K+ +R YN + +LE+RR +MQ WAD + D G ++ Sbjct: 354 GDAIEKQMAHDKKSSIRAVYNHAQHLEERRKIMQVWADFLDLLRDKGEVI 403 >UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0FEDC Length = 418 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/415 (31%), Positives = 218/415 (52%), Gaps = 29/415 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IK AKPK Y++ D GL LLIK SG K W++ + + R + G YP +S Sbjct: 3 LTDTAIKNAKPKTKAYKMSDSGGLFLLIKPSGYKSWKYDFR--INSTRGSYTIGKYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR+ +++ L+A+ I+P++ K Q + + E +T F +W N K + E Sbjct: 61 LKQARQEHLQARELVAQGINPKQI-KTQRKVNDELQTKRFSYYMNQWLN--KQVLAESTF 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC----QRINEVMI 183 D+ + +++++ P + +I E L+K + + RGA ET RL + NEV+I Sbjct: 118 KDLKQRIDKNLIPFLDKKNINEYTTADLLKIMLSISDRGAKETAIRLANVARRVFNEVLI 177 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKK---NMPSI-RPDQLPQLMHTMRTASISMS---TR 236 G+I+ P+ + + KP K+ N I ++L L++ + S T+ Sbjct: 178 L----GIIETNPAQGLAELLPKPDKRIDNNFGHITSTEELKILLNQIDAPSARQDFAVTQ 233 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 L + L+ + RP +W+ I+F+ + K+PA +K N+ VPL+ A+ IL+ M+ Sbjct: 234 ALKLMPLVFL-RPYNIRFLKWEYINFDENIIKLPATELKNNKPLDVPLATQAVTILKQMQ 292 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKR-------AGLG-GVLVSHGLRSIASTALN 348 ++G + ++F + + P++ T ALKR G G + SHG R AST LN Sbjct: 293 QVTGHKTYVFVTAQGKDTPLSENTTTNALKRIINPTTNKPYGTGYMTSHGFRHTASTMLN 352 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 E G+ D+IE LAH +K+ +R YN++ ++ +R MMQ WAD + +G+ ++ Sbjct: 353 ELGYEADIIELQLAHTNKDRIRATYNKAKWMNKRIAMMQDWADYLDGIKAGTNIV 407 >UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcus RepID=A3ZAX6_9SYNE Length = 426 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 133/402 (33%), Positives = 198/402 (49%), Gaps = 22/402 (5%) Query: 8 LTDTEIKAAKPKDAD---YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 L+D I+A +P D D + +D DGL L + SGSK W+ + YR +RT + G YP Sbjct: 2 LSDKAIQALRP-DPDRPGTKHHDRDGLYLWVARSGSKTWR-KDYRWQGARRTF-TIGPYP 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 AV L+DARK E + IDP+ Q RN E+ + F+ +A+ W+ S + Sbjct: 59 AVRLADARKQALELNTWIKAGIDPRTQVPTQQRNQAESSSRPFVQIAQAWFEHHSASWSP 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEI-KAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 Y D+ L + PA+G + I I ++ + + P+ ARGA E RR V+ Sbjct: 119 RYCRDMREKLNHFVIPALGQLDIEAISRSDIETQLLAPILARGANEQARRCNDVTRRVIE 178 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM----RTASISMSTRCLF 239 +A + L P+V K + + I +LP+L+ + R S+ Sbjct: 179 HAVDLELRQDNPAVKARKVIAATRVTHYHRISWVELPELLEVIDRFERQRLAERSSLIAL 238 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT+ RP+E EARW E+D +W IPA RMK H VPLS A + +M +P++ Sbjct: 239 RLMMLTLVRPSELREARWSEVDTEGRQWIIPAERMKTRVRHIVPLSSQARHLFDMQRPIT 298 Query: 300 GGREFIFPSRIKPNQ-------PMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-G 351 G + +F + PN M++ ++ L+R G G HG R T E+ Sbjct: 299 GHTDLVFHT---PNHRGSGELRVMSNGCLSMLLRRMGFQGRQTPHGFRGFGQTNCIEQLK 355 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 P V E LAH D N V RAY+ ++YLE+R M+Q WADL+ Sbjct: 356 IPRVVTEKQLAHADGNSVSRAYDWAEYLEERSDMLQRWADLL 397 >UniRef50_D1Y3S1 Site-specific recombinase, phage integrase family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S1_9BACT Length = 433 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 136/407 (33%), Positives = 209/407 (51%), Gaps = 36/407 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L T I+ + KDA Y L DG GL L + +G K+W +RY ++R K + G YPA+ Sbjct: 3 LNITAIERSTGKDAPYLLNDGGGLYLKVCPNGRKVWLYRYRDEGERER-KVTLGEYPALD 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-VKKTSVTEDY 126 ++ AR+ + ++ + + PQ+ TF VA RW+ KK + Y Sbjct: 62 MAAARERKEATRARILRGEAPQD-----------TALLTFEQVARRWYEKQKKRGLAPRY 110 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + I + LE + P +G + +I+ LV V+ V RG +E+ R+ ++++ YA+ Sbjct: 111 LETIRQRLECYLIPPLGARPLEQIQRAELVAVVEGVAKRGIVESSHRVGVILSQIYQYAE 170 Query: 187 NTGLI---DAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQ 242 + G++ A+ + ++ + K + ++ ++ +P+ + Q+M +R +RCL + Sbjct: 171 DAGILPGGGALAAASLSRVLPKTKTEHFATVSKPEDVRQVMECIRDYRGFAVSRCL-EFI 229 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS--G 300 LT R EA ARW EID A W IPA MK H VPLS ALA+LE MKPLS G Sbjct: 230 ALTFVRSGEARRARWREIDLEARLWTIPAEHMKRRIAHKVPLSRQALALLEEMKPLSCSG 289 Query: 301 GREFIFPSRIKPNQPMNS--------QTVNAALKR------AGLGGV--LVSHGLRSIAS 344 IF S + + + ALKR AGL + HGLRS+AS Sbjct: 290 PESLIFVSGLTGRSSSSGILTDMSLLRPFREALKRNPERAAAGLKPFPKMTVHGLRSMAS 349 Query: 345 TALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 T LNEE ++IE L+H+D + +R YN S+ L+ RR +MQ+WAD Sbjct: 350 TILNEERQGGELIEIQLSHLDADRIRLIYNNSELLDDRRALMQFWAD 396 >UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJJ0_ACIJU Length = 406 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/407 (30%), Positives = 209/407 (51%), Gaps = 29/407 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+DT+IK KP++ Y++ D + L + ++ +G K+W+ +Y L + S G YP+VS Sbjct: 2 LSDTKIKNLKPQEKMYRILDAERLYIEVRPTGKKVWRLKY--TLHSKEGTISLGEYPSVS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++ARK + E KVLL I+P + +++ + + A +NTF +AE + ++DY Sbjct: 60 LAEARKKKEEIKVLLKDGINPVQEKRKLHQENLIANSNTFKAIAEEYIVEGMKYKSKDYI 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR---------- 177 D RS+E+DI+ AIG I E+ + ++ ++ R VR+L Sbjct: 120 DQFKRSMEKDIYKAIGHKPIREVTSADILSILKNTITR-----VRKLSHYGTGEAAANQN 174 Query: 178 ---INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS 234 I+ VM YA T + P+ + A E P+ ++ + D+ +L + + + Sbjct: 175 RLFISLVMKYAIVTLRAENDPTYAVKNAIESPETEHARPLDKDERIRLRTRLELYGGTTT 234 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM--------KMNRDHTVPLSD 286 R + + T+ R +E +W +DF + P A K N H VP+SD Sbjct: 235 VRNACLAMMYTMLRASEIRRMQWSYVDFEERLIEFPKASRRRKQERSNKKNHIHLVPMSD 294 Query: 287 GALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 A+L+ +S + ++F + K ++ + T+N AL G+ V +H R+ AST Sbjct: 295 QLFALLKEQFEISQYQTYVFSAPFKNDEMLARTTLNRALVFIGMPEV-TTHDFRATASTL 353 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LNE+G+ PD I LAHV++N+ R YN + YLE RR M+Q WAD+V Sbjct: 354 LNEKGYKPDWINKQLAHVEENKTRATYNHAKYLESRRKMLQDWADIV 400 >UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID=B2UB26_RALPJ Length = 415 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 201/393 (51%), Gaps = 12/393 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT T I AKPK+ Y+L DG GL +L+ GSK W+++Y L+ +R G+YP + Sbjct: 8 LTPTRINNAKPKEQPYKLTDGGGLFVLVHPGGSKAWRYQYM--LSGKRRSVLIGSYPEIG 65 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKE-----QVRNSQEAKTNTFLLVAERWWNVKKTSV 122 +SDAR AE + ++ + DP EH+++ + + S + F + +W + + + Sbjct: 66 VSDARDRHAEYRAMVEQGTDPAEHRRQDKAERKAKESLQEDEGLFKAFSLKWIDERLATK 125 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQAR-GALETVRRLCQRINEV 181 TE Y I LER ++P IG ++ ++K L++ ++ +A E VR + Q+I Sbjct: 126 TEGYRSQIKSRLERFVWPVIGRKALEDVKPSHLLEIIEARRATPNTAEGVRVIIQQIYN- 184 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 YA L+++ P+V + P+ ++ + +L + +T Sbjct: 185 --YAIQKLLVESNPAVPLRGVITVPKAEHHRHLSESELGAFWRALGRQGAHPATTAAARL 242 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + ++ R +E A+W E D + ++W IPA RMK R H V LS A+ +LE+M+ +SG Sbjct: 243 LVYSMCRKSEVLRAKWAEFDLDKAQWDIPAERMKSRRPHRVYLSRQAIELLEIMRAISGD 302 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS-HGLRSIASTALNEEGFPPDVIEAA 360 ++ PS + P+ T+N KR G S HG R A+T L E GF DV+E Sbjct: 303 GVYVLPSVKIASVPLAEATLNHLFKRLDFGVPEFSPHGTRGTAATLLREHGFSRDVVELL 362 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LAH ++++ +Y+ + +RR +Q+ AD + Sbjct: 363 LAHTERSQTAASYHHHELEAERRKALQYLADEI 395 >UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY9_9GAMM Length = 429 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 134/413 (32%), Positives = 201/413 (48%), Gaps = 17/413 (4%) Query: 1 MARKTKPLTDTEIK--AAKPKDADYQLY-DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTK 57 MA+++ LT E+K + A Q + DG GL LLI + +K W+ Y RP+T++ Sbjct: 1 MAKQSNKLTAKEVKNLSFDVSGAKKQRHPDGGGLYLLIDETEAKYWRMDYRRPVTQKYNT 60 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 + G YP +SL AR R E K +LA IDP E + + R + NTF A W ++ Sbjct: 61 LAIGTYPTISLEQARSKRDEFKKMLANGIDPAEQRNNKKREQLQTLENTFSKFAAEWLDI 120 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAV-QPVQARGALETVRRLCQ 176 +K D+ + R L RDI P IG + + E+ L + V + RGALE+ RR+ Sbjct: 121 RKHEGKVDH--ETIRKLNRDILPFIGKLPVAELTTEQLERDVTDALVERGALESARRIKS 178 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMH-----TMRTAS 230 IN V+ +I P+ +I +P K N ++ + +L L+ T Sbjct: 179 IINMVLKLPLKRRIITYNPAPDI--ILPQPTKGNHNAVTDEKELADLLRKTWRLTKDFPR 236 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + T RP E W+ +DF A+ K N+DH VPLS A Sbjct: 237 TRIRTELAIKLSAYIYQRPGEVRTLLWESVDFENRCLSFAAS--KTNQDHIVPLSIQAYD 294 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 IL+ ++ L +++FPS ++ M++ T+ LKR G G +HG R+ A T L+EE Sbjct: 295 ILKELEELRTTSKYVFPSVKTSSECMSTDTLTQVLKRLGFKGKHTAHGFRATARTLLDEE 354 Query: 351 -GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 + D++E LAH K+ AYNR+ +L +RR MMQ WAD + G V Sbjct: 355 IEYRTDIVEHQLAHKVKDPNGTAYNRTKFLRRRREMMQLWADYLDTLRQGGDV 407 >UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO Length = 436 Score = 190 bits (482), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 128/434 (29%), Positives = 210/434 (48%), Gaps = 63/434 (14%) Query: 9 TDTEIKAAKPKDAD--YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 T ++ KP D D Y++ G GL LL++ G K W+ +Y R KQ+T + G +P V Sbjct: 10 THKHVEHLKPSDRDEWYRVAGGTGLRLLVRKQGGKYWRLKY-RFNKKQKT-LALGVFPNV 67 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV---- 122 +L A+ ++K +LA +DP + + S N+ A +W + + Sbjct: 68 TLKQAKDATIKAKAMLADGVDPGDTK------STNTNDNSLRFYAAKWLEYQSQATARVW 121 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 +ED+ +W+ LE I +GD IT+++ + + ++ V+A+G ET +R+ + Sbjct: 122 SEDHKARVWKRLENGILKKLGDKLITDVRKEDVRRLIENVEAKGHHETAKRIADDTQRLF 181 Query: 183 IYAQNTGLIDAVPSVNI---GKAFEKP-------QKKNMPSIRPDQLPQLMHTMRTASIS 232 Y + ++ + + K KP KN+P D L T R + + Sbjct: 182 EYVVDQYSLEDDVDIRLLRPVKVISKPVVHREALDIKNLPFFMQD-LANYTQTGRELT-A 239 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 ++ L +LT R E ARW+E D + W IPA RMKM R H VPLS AL ++ Sbjct: 240 LAIELL----ILTFVRSGELRGARWEEFDLDNKVWSIPAERMKMKRPHEVPLSAKALDVI 295 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAG----------------------- 329 + +K ++G E +FPS KP++PM+ T+ A+ + G Sbjct: 296 KRIKRITGHYELLFPSETKPDEPMSDNTMRQAMFKMGYFPKAKDTKDGKIAKTYLKYQDN 355 Query: 330 -------LGGVLVSHGLRSIASTALNE--EGFPPDVIEAALAHVDKNEVRRAY-NRSDYL 379 L V HG R++AS+ L+E + F D IE LAHV++N+V+ AY ++++Y Sbjct: 356 AHYPDGRLKEKAVPHGFRTMASSTLHESDQKFRSDAIERQLAHVEQNKVKDAYSHKAEYW 415 Query: 380 EQRRPMMQWWADLV 393 ++R MM+WW D V Sbjct: 416 DERVEMMEWWGDFV 429 >UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria RepID=Q3SF40_THIDA Length = 440 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/418 (30%), Positives = 200/418 (47%), Gaps = 36/418 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D++++ KP D + DG GL + I +G + W +Y P KQ T + G YPA S Sbjct: 3 LSDSKLRTLKPADRVFSESDGGGLYIEIMPTGKRRWGLKYRIPTGKQETIR-LGDYPAYS 61 Query: 68 LSDARKLRAESKVLLAKDIDP-----------------QEHQKEQVRN------------ 98 L+DAR R + K L + + P +E + +RN Sbjct: 62 LADARTWRDDCKALAGRGLSPMALKRGDPIPEDAAPAAKELAQFFIRNWCMKAVEKAKAK 121 Query: 99 -SQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVK 157 ++ +T A RW+ + +I R L++D PAIG I ++ ++ Sbjct: 122 EAEAKAADTVEAFAWRWY-AEIVEPANSNPRNIKRILDKDAIPAIGSKQIADVTVTDILA 180 Query: 158 AVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD 217 ++ RGA + + + + YA P+ I F K ++ P+ Sbjct: 181 ITDKIKNRGADQMALQTRNVLKRLFAYAIAREKTTFNPAAAIEAKFIAQAKSRDVALSPE 240 Query: 218 QLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN 277 ++ +L+ + +S+ + + +L + R +E EA+W+E+D +EW IP RMK + Sbjct: 241 EIGRLLRAIYQSSMKRAHKLALHLLILCMVRKSELTEAKWEELDLEKAEWAIPGERMKKD 300 Query: 278 RDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LV 335 + H VPLS A+A+ E +K L+ G E++FPSR +P+ +N + RA V V Sbjct: 301 KPHLVPLSRQAVAMFEELKGLASGSEWVFPSRSSLKKPIAHNALNTVV-RALEADVRDFV 359 Query: 336 SHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 H R AST L+E GF D IE ALAH K +R YNR+ Y +QRR M+QWWAD V Sbjct: 360 IHDFRRTASTHLHEAGFNSDWIEKALAHETKG-IRGVYNRAQYADQRRDMLQWWADFV 416 >UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8S0_ACIBT Length = 433 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/427 (31%), Positives = 214/427 (50%), Gaps = 29/427 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA++ +PLTDT+ + KPKD +Y DG GL L ++ +G+K W FRY +R K + Sbjct: 1 MAKQVRPLTDTKCASLKPKDKEYVEADGGGLYLRVRPTGAKSWIFRYTNRGNDKREKITL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-- 118 G YPA+SL+ AR+ + E ++A+ +DP+E + + +++ NT V W + Sbjct: 61 GPYPALSLAKAREKKHEFLRMIAEGVDPKE--QLSILLAKKNNVNTLENVVRVWLDAYAV 118 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + ++ED + R E +FP D +I +I L A+ + QRI Sbjct: 119 RKPLSEDTKNKQLRKFENHLFPKFKDKAIEQITLRDLKDALNVIYDHSPDN-----AQRI 173 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFE----KPQKKNMPSIRP-DQLPQLMHTMRTASISM 233 +I + + + NI + E +K + + R D +PQL+ ++ S + Sbjct: 174 RASLIQVYSYAVQHSYIQTNIARDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNP 233 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHT 281 T+ + L T R +E ARW+EIDF A W+IP R KM +H Sbjct: 234 LTKLCLLLGLHTFLRSSEIRFARWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHL 293 Query: 282 VPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS-HGLR 340 VPLS ++ ILE + SG +F+FPS ++ T N AL+R G +S HG R Sbjct: 294 VPLSKQSIEILEKVYQYSGDCDFVFPSLNNKRIFISENTPNDALRRMGYTKEEISFHGFR 353 Query: 341 SIASTALNEEG-FPPDVIEAALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADS 398 ++A +AL E F D +E ++H ++NE AY ++YLE+R +MQ W+D + A ++ Sbjct: 354 ALARSALGEMSIFSRDALEKQMSHQERNETVGAYTHIAEYLEEREKIMQIWSDWLSAIEN 413 Query: 399 GSIVLTH 405 G + H Sbjct: 414 GDYISPH 420 >UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVD1_ACILW Length = 399 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/396 (30%), Positives = 192/396 (48%), Gaps = 14/396 (3%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL++ + + P++ DY+ DG GL L+K SG K WQ+RY K GAY Sbjct: 7 KKRPLSEKTLSSLVPEEKDYRELDGVGLYFLVKKSGVKNWQYRYKNSEGKW-AWMGLGAY 65 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P VS AR+ E L+K + + +K + +E ++ F + W + K + Sbjct: 66 PQVSAQLARQKAREFTSALSKG-ESLKSKKVLLEERKELESFYFENLMREWLDTKSSKWG 124 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET-VRRLCQRINEVM 182 E +S+E+ I P G + EI Q +Q + T + +L + Sbjct: 125 EATYTKAQKSIEKHIIPVFGQGNYKEITPKEWFDFFQGLQRTLGIHTQIEKLVSYVRGCY 184 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA---SISMSTRCLF 239 +A+ G I++ P + K + + NM + D+LP L+ +R +I + L Sbjct: 185 DWAKFKGKINSNPIEGMSKHLDAYESGNMDFVTVDELPALLKKIRNNKKRAIGIGLELLM 244 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 M RP E A+W++ DF + W PA K ++H VPLS + +L ++ + Sbjct: 245 M----LFPRPGELRMAKWEQFDFKKALWTKPAEMTKTRQEHQVPLSKQVITLLTELRSIQ 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFP--PDVI 357 EF+FPSR+ N+ ++ T N AL R G G HG R +AST LN + F VI Sbjct: 301 PESEFLFPSRLSVNKTISDMTFNLALNRLGYKGKQNPHGFRHLASTILN-DAFSDQEQVI 359 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E LAH K V+ Y++S +L++RR +MQWWAD + Sbjct: 360 EVCLAHKKKG-VKGVYDKSQHLDERRVLMQWWADYL 394 >UniRef50_C6UP78 Integrase n=13 Tax=Escherichia coli O157:H7 RepID=C6UP78_ECO5T Length = 301 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 108/270 (40%), Positives = 158/270 (58%), Gaps = 5/270 (1%) Query: 2 ARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 RKT LTDT++++AKP++ +Y L DGDG++LL+K GSK W+FR+ R KQ +F Sbjct: 22 GRKTIMALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRF-RFGGKQHL-MAF 79 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+DARK R E++ L+A IDP+EH K V+ Q + TF VA R W V Sbjct: 80 GVYPDVSLADARKKREEARKLVAAGIDPREH-KRAVKEEQAKEIITFEKVA-REWLVTNQ 137 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +ED+A+ + +SLE +IFP IG +I E+ L+ ++ V+ G LE RL QR Sbjct: 138 KWSEDHANRVKKSLEDNIFPTIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTA 197 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M YA +GLID P+ + A +++ P++ ++P+L+ + + + T C Sbjct: 198 IMRYAVQSGLIDYDPAQEMSGAVASSNRQHRPALELKRIPELLDKIDSYTGRPLTHCTTE 257 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIP 270 LL R ++ ARW EIDF S W IP Sbjct: 258 LTLLIFIRSSKLHFARWSEIDFETSMWTIP 287 >UniRef50_A7H0X5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0X5_CAMC5 Length = 396 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/396 (29%), Positives = 194/396 (48%), Gaps = 20/396 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D++IKA KPK+ Y++ DGD L + + SG+K + + + + + + S G YPA+S Sbjct: 4 LNDSKIKALKPKEKRYKISDGDNLYIQVMPSGTKTFIYEFKSRSSGRYKRISLGQYPAIS 63 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR+ R E + LA +P K+ + +F V + W+ K+ V+ A Sbjct: 64 LLMAREKRLEFQKALANGDEPMSEAKQAM--------TSFEAVFDEWFKFKQKEVSTKQA 115 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 R ER P G I I +++AV+ + ET+ R I+++ +A Sbjct: 116 FTHKRYYERFFLPKFGKDDIKTITKRQILEAVESLNKEAKFETLDRALSSISQLFRWAVM 175 Query: 188 TGLIDAVPSVNIGK--AFEKPQKKNMPSIRPDQ-LPQLMHTMRT--ASISMSTRCLFMWQ 242 ++ P+ I K F+ P+ + +I D + +L++ ++ I + T LF Sbjct: 176 NEYLEHSPTYGIDKNALFKMPKVNHYAAIFDDDGIRKLVNNIKNYDGDIRVITAALF--G 233 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LL+ RP A+W EI+F W+IP +MKM H VPL A+ +L K Sbjct: 234 LLSAQRPFNVRSAKWSEINFEKKIWEIPKEKMKMKEAHIVPLCSQAIKLLSSFKKYEFRS 293 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIAST----ALNEEGFPPDVI 357 EF+FPS P++ +V + L+ G +V HG R++ ST + E G +I Sbjct: 294 EFLFPSVKSTKIPISDNSVRSMLRNLGYTNDDIVPHGFRAMFSTICHEHIKEHGLEERII 353 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E L H ++N+V+ AYN + L++R +MQWW D + Sbjct: 354 ELCLDHAERNKVKAAYNHAKNLKERAQLMQWWGDYL 389 >UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombinase phage integrase family protein n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF6377 Length = 393 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 125/390 (32%), Positives = 198/390 (50%), Gaps = 15/390 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLT +I+ AKP A +L D GL L + G+KLW++R+ L + + G+YP + Sbjct: 2 PLTAVKIRHAKPGPAPIKLTDSGGLFLEVTPGGNKLWRYRFR--LAGKENTYAIGSYPDL 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAK-TNTFLLVAERWWNVKKTSVTED 125 SLSDAR R ++ L+ +P H ++ V+ Q ++ +NTF +VAE W + + T Sbjct: 60 SLSDARAERDAARELVKLGRNPA-HVRQTVKAQQLSENSNTFKVVAEEWIEKRLANRTLK 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 Y D I R+ D++P IG + EI A ++ + + R A + Q I+ V Y Sbjct: 119 YRDQIRRAFVNDVYPKIGRFPLREITAAQILVIITQMDKRDATTLALMVRQWISSVFCYG 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR----CLFMW 241 T D+ P+ + A +K++ RP L +L R L++ Sbjct: 179 VVTLRADSDPAAAVRGAI---SRKDVNHSRPMNLEELAEYFLAVGKYGGHRGTVIALYLL 235 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LL + R E A W E D + + W IP+ RMK R H VPL + A+A+L ++ L+ G Sbjct: 236 PLLFV-RTVELRLAEWSEFDLDKAIWIIPSGRMKRKRPHMVPLPERAIALLRELRSLTAG 294 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAA 360 +FP P+QP+++ T+N AL+ L G H R+ AST L E + + + IE Sbjct: 295 -NLLFPGMKHPSQPISATTLNRALEYMDLRG-WHCHDFRATASTHLYESQLWRSEAIEMQ 352 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 L+H + ++ + AYN + Y ++R MM WW Sbjct: 353 LSHKESDKTKAAYNHAKYWDERSKMMVWWG 382 >UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9F3_9SPHN Length = 443 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 132/424 (31%), Positives = 220/424 (51%), Gaps = 38/424 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT EIK AKP+ +DY+L D GL L + S+G K W++RY R K++T + G YP + Sbjct: 3 LTIVEIKNAKPQASDYRLADSQGLFLHVTSAGGKFWRYRY-RIGPKEKT-LTLGRYPEMG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQ-EHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 L AR+ E++ L+++ DP E QK ++ + AK TF +AE W ++ + Sbjct: 61 LVAAREAHHEARKLVSEGKDPALEKQKAKIARIEAAKI-TFRKLAEEWLADQEPIWSVSN 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A + ERD++P G++ I +I++ +++A++ ++ARG++ET +R+ I V A+ Sbjct: 120 AKRVRHRFERDLYPLFGNLPICQIESAPILRALRKIEARGSIETAKRVRGYIKSVFRRAK 179 Query: 187 NTGLIDAVPSVNIGKAFE--KPQKKNMPSIRPDQLPQLMHTMRT---ASISMSTRCLFMW 241 GL+D + I + + KP ++ ++P+ + + ++ S++ + Sbjct: 180 GEGLVDHAILLEIDEIKDALKPARRGSKQPALTEVPETLEFQKAVDRSTSSLTVKLASRL 239 Query: 242 QLLTITRPAEAAEARWDE---IDF-------NASEWKIPAARMKMNRD--------HTVP 283 LT+ R A W E ID+ NA W+IPA+RMK++ + H VP Sbjct: 240 LALTLVRVGVLRTALWSEFEGIDWDNPDAIPNAPIWRIPASRMKLDVEDKGNPAFGHDVP 299 Query: 284 LSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG---GVLVSHGLR 340 L A+ +L ++PL+GG +FP+ +PM+ ++ KR G G V+V HG R Sbjct: 300 LPHQAVEVLRALRPLTGGFALLFPNSKSWREPMSDAALSTMYKRMGGGRYKNVMVPHGWR 359 Query: 341 SIASTALNEEGFPPD------VIEAALAHV--DKNEVRRAYNRSDYLEQRRPMMQWWADL 392 S ST +NE + VI+ LAHV + +YNRS Y + R ++Q WADL Sbjct: 360 SSFSTIMNERAAELERDGDRMVIDLVLAHVPPGVSASEWSYNRSRYRKPRGTLIQIWADL 419 Query: 393 VKAA 396 + Sbjct: 420 ITCG 423 >UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonadaceae RepID=A1W8P6_ACISJ Length = 413 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 127/411 (30%), Positives = 202/411 (49%), Gaps = 20/411 (4%) Query: 8 LTDTEIKAA--KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD + K A P + D GL L + SGSK W ++ Y + + + G+YP Sbjct: 2 LTDKQCKNAICPPDKKRARFTDSLGLYLEVSPSGSKRWFWKTY--FDGKEGRMALGSYPT 59 Query: 66 VSLSDARKLRAESKVLLAKDIDP-QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 SL+DARK R +K+ A +DP QE + E+++ S+ +TF +A W + ++ Sbjct: 60 QSLADARKARDIAKLKKADGVDPVQERKLEKLKGSRSG-GDTFQAIALEWHGRQVDQWSD 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR---LCQRINEV 181 +A R LERD+FP IGD +T I+ L+ +Q ++ RGA+ET R LC++I Sbjct: 119 THAGRTKRQLERDLFPWIGDRQMTSIEPMELLATLQKIEERGAMETADRALMLCRQIWRY 178 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFM 240 + D +V + + N P+I P + +L+ M S + R + Sbjct: 179 WLPTAGNTQRDI--TVGLKNRLTPYRGTNFPAIVEPKRFGELLRAMHVYKGSHTVRTALL 236 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD-------HTVPLSDGALAILE 293 L RP W E+D +A+ W IP+ +MK + H VPL A+ +L Sbjct: 237 LAPLLYQRPGNLRAMEWAEVDLDAALWTIPSMKMKRTKTEKEQGEPHAVPLPTQAVELLR 296 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GF 352 ++ L+G ++FP + +PM+ +V +AL G G HG R+ A T L ++ Sbjct: 297 NLQALTGRGTYVFPGQRDHERPMSDNSVRSALYSLGFGTEQSWHGFRASARTMLVDQLDL 356 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 P IEA LAH K+ R+YNR+ YL++R +Q WA+ + G+ V+ Sbjct: 357 DPLAIEANLAHAVKDSNGRSYNRTQYLKKRYDQVQMWANYLDRLRLGAEVV 407 >UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria RepID=B2I529_XYLF2 Length = 410 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 123/399 (30%), Positives = 200/399 (50%), Gaps = 25/399 (6%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDT +KA KP+D Y + D GL++ + +G +W+FRY L + K + G YPA+ Sbjct: 2 PLTDTALKALKPRDRIYSVADERGLSVEVYPTGGIVWRFRYR--LAGRYEKLTLGKYPAL 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL +AR R E+ L+A P +++Q+ A T AER++ + + D Sbjct: 60 SLRNARLKRDEAASLVAMGTSPA--RQKQLAKVTAADAMTVRDFAERFF---REIQSRDR 114 Query: 127 ADDIW--RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 D R L++DI P +GD + E+ A + + + +G T ++ + + Y Sbjct: 115 KDSTMPRRYLDKDILPFVGDKPMREVTAEEIRSLIWRKKEQGFDATAGQIRGVLKRLCDY 174 Query: 185 AQNTGL-----IDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 A GL + A+P ++ KA + + ++ PD++ + + + I + Sbjct: 175 AVTCGLMPTNPVLALPMRHVYKAVSRDR-----ALSPDEIRLFLRAVWASRIRRQFKLAL 229 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 LLT+ R +E ARWD + + ++W IPA K + H V LS A+ + E ++ L+ Sbjct: 230 HLILLTMVRKSELLLARWDHVHLDQAQWHIPAEHSKTGKPHIVYLSRQAVVLFEALRVLA 289 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRA----GLGGVLVSHGLRSIASTALNEEGFPPD 355 GG + P +P +N AL +A G+ + H LR AST L+E G+ D Sbjct: 290 GGSALVMPGSGTLTRPFAHNALNHALGKAMQWQGIHAFTI-HDLRRTASTWLHEHGWASD 348 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 V+E AL H VR YNR++Y +QRR M+Q WAD ++ Sbjct: 349 VVEKALNH-SIGGVRGVYNRAEYADQRRQMLQCWADFIE 386 >UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UDD1_9RHOB Length = 406 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 120/397 (30%), Positives = 196/397 (49%), Gaps = 5/397 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +I+A KP D Y++ D +GL++ + G + W+FRY + G YP+V Sbjct: 2 PLTDAKIRALKPADTLYRVSDSNGLSIEVTPKGDRYWRFRYR--FNGKAQMMGLGRYPSV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL AR R + LL + ++P ++ + + + + ++F +A + ++T Sbjct: 60 SLKKARSKRDHYRELLDEGLNPSLERQTRQQELAQLEQSSFGSIATEFLRKRETEGAAPA 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 R+L R + P + + I EI A L++ ++ ++RG + YA Sbjct: 120 TLKKLRALLRLLLPDLAPLPIQEITAPQLLQVLRATESRGKHVVATEARALAGRIFRYAI 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG + PS + +A P+ K +IR P+ L+ + T + + T Sbjct: 180 ATGRCEQDPSYMLREALVTPRVKGYAAIREPEAFGALLARIETYEGDTLIKNGLLLLAHT 239 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP + A+W++ D A+ W+ PA R KM+R H PLS + +++ M + Sbjct: 240 FVRPGQLRLAQWEDFDLEAALWRAPADRTKMSRFHITPLSSQVVCLIKEMHRNKADDTLV 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAG-LGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 SR+KP P++ T N AL+ G +G V V+HG R AST LNE+ + D IE L HV Sbjct: 300 MGSRVKPGHPISDMTFNKALRSLGVMGDVHVAHGFRKSASTMLNEQEYNYDWIERQLDHV 359 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWAD-LVKAADSGS 400 +N +R YN + YL+ R MMQ W+D L + D G+ Sbjct: 360 SQNRIRGIYNAAQYLQGRTRMMQEWSDYLDRLKDDGT 396 >UniRef50_C9M6R5 Site-specific recombinase, phage integrase family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R5_9BACT Length = 393 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 185/398 (46%), Gaps = 21/398 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IK K + Y + DG+GL LL+ +G K+W RY+ + K+ + + G YP + Sbjct: 2 LTDTAIKRLKLGETRYLILDGNGLYLLVCPNGRKVWTVRYW--IDKKLHQLTIGDYPMMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR R E K + + TF A W+ +K A Sbjct: 60 LAEARAERDEIK-----------NDARYEKKVAAPMGLTFGEFAREWYEKRKRPKLSKSA 108 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++ R + P + +TEI +V + + + ETVRR ++ VM YA Sbjct: 109 QALYDLRFRYLDPLMAR-PLTEITREEIVDTLHKLSEQHPAETVRRTGGIVSMVMGYALA 167 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T I PS +G K MP+ ++ LM + + S+ R T Sbjct: 168 TRKIPYDPSSQLGLELPIHVSKPMPAATHASEIGVLMRALESID-SLVLRSAIQLIAYTF 226 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R EA ARWDEID W +PA K DH VPLS A+ IL+ ++ GG+ IF Sbjct: 227 VRSGEACLARWDEIDLKEGLWSVPAEHTKTKLDHLVPLSRQAVMILDTLRRRFGGKGHIF 286 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGV-----LVSHGLRSIASTALNEEGFPPDVIEAAL 361 PSR + + S +K L V HG R+ AST LNE + DVIEA L Sbjct: 287 PSRNRGKLVIPSTLSREMVKLQSLPLEARPIPTVVHGFRATASTVLNEHQWNRDVIEAQL 346 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 H ++N+ RRAYNR++YL R MMQW+AD + A G Sbjct: 347 GHFERNKSRRAYNRAEYLPIRISMMQWYADYLDALRDG 384 >UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IGA6_BORPD Length = 657 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 130/436 (29%), Positives = 217/436 (49%), Gaps = 40/436 (9%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++ AK Y LYD D L+L++ ++G K W FRY L KQ+ + + G YPA+S Sbjct: 17 LSDLIVRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRYSW-LGKQK-RMALGGYPALS 74 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE--- 124 L +AR R +++ L+A+ IDPQ + ++ ++ A TF V + W ++ + E Sbjct: 75 LREARAERDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQ 134 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 I R +D+ P +G +SI +I+ L+ + ++ R A T ++ N++ Y Sbjct: 135 STLSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRY 194 Query: 185 AQNTGL-IDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTAS-----ISMSTRC 237 A ++ P+ ++ E KP + P + +LP+ + +R + + R Sbjct: 195 ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRL 254 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD--------------HTVP 283 LF LT R E A ++ D + W IP +K +D + VP Sbjct: 255 LF----LTGVRTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPPYIVP 310 Query: 284 LSDGALAI----LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGL 339 LS A+ I L +M+P ++++ R + + ++ T+N A++ G G L HG+ Sbjct: 311 LSLQAIEIVRYLLGVMRP---AQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGI 367 Query: 340 RSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 R STALNE G+P ++A L+H D N+V AYN + Y+E RR MMQ WAD + + G Sbjct: 368 RGTISTALNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG 427 Query: 400 SI--VLTHLSKIRLVG 413 + HL+ IR+ G Sbjct: 428 EVQAASAHLT-IRIDG 442 >UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L9U1_9GAMM Length = 399 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 199/387 (51%), Gaps = 8/387 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ AKP + Y+L DG GL L I+ +GSKLW++ YR +KQR + G+ VS Sbjct: 3 LTDFKIRGAKPAEKPYRLSDGGGLFLEIRPNGSKLWRY-AYRLDSKQRL-LAIGSLQDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR ++K + DP +K S+E+ NT AE W++ + S + + Sbjct: 61 LADARAAMRQAKSQVKLGQDPVLQRKIAKARSEESALNTVAENAEDWYSGAEKSWSASHR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA-LETVRRLCQRINEVMIYAQ 186 D R L++ I P IG I E+ ++K ++ + G + V R Q ++ V +A Sbjct: 121 DRARRYLDQRILPDIGKWPIREVTPADVLKLLRKAEKAGPHVAIVTR--QTLSSVFEHAI 178 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 DA P+ + +A +KP + + + +L+ + T + T LT Sbjct: 179 VNLRADADPTHPVRRAIKKPPVMHAVAHSAATMGKLLAGLDTYPGNRVTAIAIELLALTF 238 Query: 247 TRPAEAAEARWDEIDFNASE--WKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 R E A+W ID+ A KI A MK R H VPL+ A+A+L ++ ++G + Sbjct: 239 VRTKELRTAKWANIDWEAESPLLKIDAGEMKKRRKHWVPLAPRAVALLRELQEITGAGTY 298 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 +FP++ P +PM+ + VN LK G+ + H R+ AST L+E G+P V++ LAH Sbjct: 299 LFPNQRDPKKPMSREAVNMGLKYLGMDEI-SGHDFRATASTWLHEAGYPSAVVDMQLAHA 357 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWAD 391 N+ AYN +++L R MM WAD Sbjct: 358 KTNKTGAAYNHAEFLPDRIKMMDRWAD 384 >UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N3S0_9GAMM Length = 397 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 196/387 (50%), Gaps = 11/387 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYR-PLTKQRTKQSFGAYPAV 66 L+D+ I++ K D D DGL L ++ S +L + +R K+ + G Y +V Sbjct: 2 LSDSLIRSLKLGDKKRHT-DRDGLVLELRPSKKQLKKIFIFRFQWDKKPQTITIGDYRSV 60 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 L AR + + ++ IDP+ + V QE T F +VA++W+ K + + Sbjct: 61 GLGAARDIALAYRNMVNSGIDPRS---KNVEADQEKIT--FEVVADQWFQKYKGTWKDFA 115 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + +SL RDI P IGD I +I L+ ++P + G + RL R+ + +A Sbjct: 116 RNRHSKSLSRDIIPLIGDKPIDDITKADLLFIIKPHEDLGHHDVAHRLYARLQSIFEFAV 175 Query: 187 NTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + L + P + + KA KP+ N P+I + ++M ++ + + + Sbjct: 176 GSSLTENFPFIGLKKALIPKPRVINQPAISSNNAHEMMRVIKQTNSTKIVKVYMELLAHL 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 TRP E EA+W E D SEW IPA RMKM H VPL+ L +L+ ++ ++G ++ Sbjct: 236 FTRPTELREAKWSEFDLQKSEWNIPAERMKMGIPHWVPLTPHVLNLLKELRLITGFTPYL 295 Query: 306 FPS-RIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 F S +K +P++ +V L AG +HG RS+AS+ L+E+G F D IEA LAH Sbjct: 296 FSSPALKKAKPISEASVRKLLHNAGFKNRHTAHGFRSLASSVLHEQGNFRSDAIEAQLAH 355 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWA 390 + VR Y R+D+ +RR +M W++ Sbjct: 356 KVQG-VRGVYLRADFKAERRELMHWYS 381 >UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter RepID=A7ZG37_CAMC1 Length = 406 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 122/403 (30%), Positives = 202/403 (50%), Gaps = 28/403 (6%) Query: 10 DTEIKAAKPKDADYQLYDGDGLTLLI------KSSGSKLWQFRYYRPLTKQRTKQ-SFGA 62 D +K K+ + + DG+ L + +K + F+Y K+ TKQ G Sbjct: 7 DLALKKFTLKNKNREWVKDDGVKFLYVLAYKTQKETTKTFYFKYQESNQKRTTKQIKIGK 66 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YP+++L++AR E + L + D Q +Q KT TF VA+ W + +++ Sbjct: 67 YPSITLAEARAKALELERLRDRGEDLQTATAKQ-------KTITFKDVADEWIDKEQSKE 119 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA-----LETVRRLCQR 177 + I R +E+++ P +GD +ITE+K A++ +QAR A ET R + Sbjct: 120 LIAFNKQIGR-IEKNLIPYLGDKAITELKRRDYAHAIEQIQAREAKRGITHETSLRTFRL 178 Query: 178 INEVMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMS 234 + +++ A N G I+ P+ +I AF+ + +I P +L +L+ M+ S Sbjct: 179 LRKILDLAVNKGYIEHNPTRDIIFNDAFKTSTNNHFKAITEPKKLKELLGAMQDYQGSFY 238 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 T+ ++ + T R A +W +DF + PA MK+ +P+S +L+ Sbjct: 239 TQQALIFGVHTFLRSANVRGLKWQYVDFENNLITFPAEAMKLREVFYMPMSKQVKKLLKT 298 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE----E 350 M G +F+FPS I +P++ T+N A+KR G G +V HGLR+ AST LNE Sbjct: 299 MLEHKRG-DFVFPSGISATRPLSDSTLNQAIKRLGFGDEMVFHGLRTTASTLLNENIKNH 357 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 GF DVIE L H +++ V+ Y+RS L++R +MQWW+D + Sbjct: 358 GFSSDVIELCLDHKERSSVKAIYDRSQRLDERAKLMQWWSDYL 400 >UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UI65_ECO1A Length = 352 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 157/294 (53%), Gaps = 8/294 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L +I AKPK+ Y+L DG GL LL+K +G K W+ +Y R K++ + G YP V+ Sbjct: 3 LNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKY-RVAGKEKL-LALGVYPEVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR R ++K +A IDP E ++E+ + NTF +A W + K + YA Sbjct: 61 LADARAKREDAKRGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 DI + +D+FP IG I EIK L+ ++ ++ RGA E +++ QR EV YA Sbjct: 121 SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 TG + P+ ++ A + + + P + +LP + +S S S + +LL IT Sbjct: 181 TGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKAL--SSYSGSALVVMAARLLIIT 238 Query: 248 --RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTV--PLSDGALAILEMMKP 297 R E A WDEIDFN + W+IPA+RMKM R H V P G I E+ P Sbjct: 239 GLRTGELRGALWDEIDFNKAIWEIPASRMKMRRPHIVNRPGFPGECFICELRLP 292 >UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepID=B7UP04_ECO27 Length = 405 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 143/410 (34%), Positives = 197/410 (48%), Gaps = 44/410 (10%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKS-SGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTDT+ + KP D GLTL S G W FRY P+T++R G YP V Sbjct: 4 LTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEV 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAER--------WWNVK 118 S+++A + + LA DP E +K + S++ TF A R W N K Sbjct: 64 SIAEAARTARIMREQLAAGDDPLEIKKAE---SEKVVIPTFADAARRVHAELSPGWENPK 120 Query: 119 KT----SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 S E+YA FP +G ++ I A + + ++PV + ET R+ Sbjct: 121 HVRQWLSTLENYA-----------FPQLGAKTLDSITAADVAETLRPVWLTLS-ETASRV 168 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQK-----KNMPSIRPDQLPQLMHT-MRT 228 QRI+ VM + G A P + PQK ++ P++ QLP + T + T Sbjct: 169 KQRIHVVMQWGWAHGFCVANPVDVVDHLL--PQKTRGRDEHQPAMPWRQLPLFVATSVYT 226 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 TR L + +LT TR EA RW EIDF+ W IPA RMK H VPLS A Sbjct: 227 DEPYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQA 286 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-----GGVLVSHGLRSIA 343 + ILE ++ L E +FPS K Q ++ + + L++ G V +HG RS Sbjct: 287 MHILENIRGLHD--ELVFPSPRK-QQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTF 343 Query: 344 STALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 +E+G+ D+ E ALAH KN+V AY+R+D LEQR PMMQ WAD V Sbjct: 344 RDWCSEQGYSRDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV 393 >UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J426_COMTE Length = 416 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 129/417 (30%), Positives = 204/417 (48%), Gaps = 14/417 (3%) Query: 8 LTDTEIKAA--KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD + + A P + D GL L + +GS+ W ++Y + + R + G YP Sbjct: 2 LTDAQCRNAVCSPGAKRERFSDAGGLYLEVSPAGSRRWFWKYRKDGKEGRL--ALGRYPE 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL+ ARK R +++ ++ IDP + +K + + +TF VA W+ + + Sbjct: 60 VSLTAARKARDAARLQKSEGIDPAKARKLEKLVNPTGVADTFKAVALEWYEKQVPRWSPG 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A+ + R LERD+FP IG+ + +I+ L+ +Q V+ARGA+ET R +V Y Sbjct: 120 HAERMHRQLERDLFPWIGEREMAQIQPMELLAVLQKVEARGAVETADRALMLARQVWRYW 179 Query: 186 QNTGLIDAVPSVNIGKAFEKPQK-KNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 T KA P + N P+I P + +L+ M R + Sbjct: 180 LPTASNTQRDITEGLKARLTPYRGTNFPAIVEPQRFGELLRAMYAYKGGPFVRTALLLAP 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMN-------RDHTVPLSDGALAILEMMK 296 L RP W E+D +A+ WKIP+A+MK + H VPL A+A+L + Sbjct: 240 LLYQRPGNLRMMEWAELDLDAALWKIPSAKMKRSVQEKENGEPHVVPLPKQAVAMLRELL 299 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPD 355 PLSG ++FP + ++PM+ +V AL G+G HG R+ A T L ++ P Sbjct: 300 PLSGRGRYVFPGQRDHDRPMSDNSVRTALYSLGVGEEQSWHGFRASARTMLVDQLDLDPL 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 IEA LAH K+ R+YNR+ YL +R +Q WAD + G+ V+ K +++ Sbjct: 360 AIEANLAHAVKDANGRSYNRTKYLAKRFDQVQQWADYLDRLREGAAVIEFPQKNKVM 416 >UniRef50_B5J5X2 Site-specific recombinase, phage integrase family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J5X2_9RHOB Length = 383 Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 16/375 (4%) Query: 31 LTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQ- 89 + L + SG K+++ YR QRTK G YPA SL+DAR L+A + L DP+ Sbjct: 1 MFLEVLPSGRKVFRL-AYRLAGNQRTKL-IGDYPATSLADAR-LKASAFRLDLNSSDPEI 57 Query: 90 ---EHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDI---FPAIG 143 + Q +++ +T T+ VA+ + +++ S + A R L I A+G Sbjct: 58 VEVATRPRQTVTTKKRQTTTWKEVADGYLMMRQQS---NPAPKTLRKLNYQIGVTVDALG 114 Query: 144 DISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF 203 + + EI A ++ V P+ + G +ET + R +++ YA GL+ P+ A Sbjct: 115 NPRVDEITAQDILDVVNPIASSGRVETAHEIRARFSQIFRYAGARGLVTHDPAAFTIDAM 174 Query: 204 EKPQKKNMPSIR-PDQLPQLMHTMRTA-SISMSTRCLFMWQLLTITRPAEAAEARWDEID 261 K ++ I P + +L+H + + + M R E RWDEID Sbjct: 175 IKRRRGEFAGITDPAAVGKLLHAIESYREANPIVGAALMLSAYLFPRNTELRGMRWDEID 234 Query: 262 FNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTV 321 +++ W++P RMKMNRDH VPL A+ +L ++ G E + PS P + ++ T Sbjct: 235 WDSLRWEVPGQRMKMNRDHIVPLPSQAIDLLRFLQKYDFGSELVLPSPRDPKRMVSDMTF 294 Query: 322 NAALKRAGL-GGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLE 380 NAAL+R G V HG R+ AST LNE G+ D IE LAHV N+VR +YN++ YL+ Sbjct: 295 NAALRRMGFKSDRHVHHGFRTTASTNLNEMGWNYDWIERQLAHVPANKVRSSYNKAQYLD 354 Query: 381 QRRPMMQWWADLVKA 395 R MM+ +AD + A Sbjct: 355 GRTEMMRAYADWLDA 369 >UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root RepID=A5EUW8_DICNV Length = 399 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 118/392 (30%), Positives = 187/392 (47%), Gaps = 19/392 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ KP + Y++ D GL ++ +GS LW+ RY L +R + + G YPAVS Sbjct: 2 LSDAKLRKLKPTEKKYKIADSHGLFAVVMPNGSILWRMRYV--LAGKRRELALGKYPAVS 59 Query: 68 LSDARKLRAESKVLLAKDIDP-----QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 LS+AR++ + + + +DP + H+K+ EA LL++E K Sbjct: 60 LSEARQIVLLYREQIERGVDPHAQHVERHKKQDGVTVAEA---VELLLSE-----KAKYC 111 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + Y + L + G ++ E+ + + G T R+ E+ Sbjct: 112 SASYLESCRSRLSNHVLSRFGARALAEVSEDEWRALINWLDNGGKNYTAIRVQDLAGELY 171 Query: 183 IYAQ-NTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFM 240 + TGL A P + I +K +N P I P + +L+H + + Sbjct: 172 KTVRLKTGLKIANPILEIRGTVKKKPAQNYPRITNPARFGELLHAIDYFNGRWQVYLALK 231 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + L R E W E+DF + W IPA ++KM R H VPLS A+AIL + L Sbjct: 232 FLPLVFCRQIELRRMVWQEVDFERALWCIPAEKIKMRRAHLVPLSTQAIAILRQAEQLRC 291 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEA 359 + +F P QP++ T+ +AL+ G G +V HG R A+T LNE G+ +++ Sbjct: 292 S-DLVFCGVRNPRQPISVNTIGSALRTLGFGHDEMVGHGFRGTAATLLNELGWDSHIVDF 350 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 LAH ++ V AYN ++YL QRR MMQ WAD Sbjct: 351 QLAHWQRSSVSSAYNHAEYLTQRREMMQAWAD 382 >UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI75_9BACT Length = 398 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 188/393 (47%), Gaps = 24/393 (6%) Query: 25 LYDGDGLTLLIKSS--GSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLL 82 LY GDG TL +K S GSK W R+ + +R G +P VSL +AR+ +++ + Sbjct: 17 LY-GDGGTLFLKVSPGGSKSWVQRFT--IKGKRHDVGLGGWPVVSLQEARERAFDNRRAV 73 Query: 83 AKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIW-RSLERDIFPA 141 A DP E+ + S+ A TF VA +++ D W + +E+ FP Sbjct: 74 AHGRDPL---AEKQKASKAAAVPTFRAVARKYYEENLPRWKAGRHTDRWLQVVEKYAFPV 130 Query: 142 IGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDA-VPSVNIG 200 GD+ + + +++ + P+ E R+L R+ ++ + Q G + + IG Sbjct: 131 FGDVPVDRVGREDVLRMLTPIWT-AKPEYARKLRHRVRLILDWCQAHGYVHTNIAGEQIG 189 Query: 201 KAFEKPQKKNMPSIRPD-------QLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAA 253 A +MPS++ ++ Q + + + S+S + + +LT RP EA Sbjct: 190 GAL-----PSMPSVKEHHRSLPYAEVSQALDLIEASGASLSAKLCLRFLILTAVRPGEAR 244 Query: 254 EARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPN 313 A W+EI++ W IPA +MK +H VPLS A+ +LE + G IFPS +K Sbjct: 245 NATWEEINWETKTWTIPAGKMKAKAEHRVPLSREAMQVLERASRVRGESPLIFPSSLKRA 304 Query: 314 QPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAALAHVDKNEVRRA 372 +P++ T+ L+ GL V HG RS T E+ P VIE LAH N + +A Sbjct: 305 KPLSDMTLTKLLRDVGLREKTVPHGFRSSFRTWAGEQTNSPTPVIELCLAHSVGNAIEKA 364 Query: 373 YNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 Y RSD L++R+ +MQ W V ++V H Sbjct: 365 YTRSDLLQKRQRLMQEWGRYVTGEGRANVVPLH 397 >UniRef50_A7H3V7 Putative site-specific recombinase, phage integrase family n=2 Tax=Campylobacter jejuni RepID=A7H3V7_CAMJD Length = 399 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 110/394 (27%), Positives = 187/394 (47%), Gaps = 19/394 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L DT+IKA K KD Y + D D L L I SG K + F Y P T + + + G YP ++ Sbjct: 2 LNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTLN 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++ARK R KV LA++ + +R E TF +A +KK ++E Sbjct: 62 LANARKQRDNLKVNLAEN--------DSIREKSEI---TFKELALEKMELKKLELSEKTY 110 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 L+R F G+I + +++ ++K+ + + E + +NE+ + Sbjct: 111 KSYVSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTLLNEIFRHGVI 170 Query: 188 TGLIDAVPSVNIGKA---FEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 I + P N+ + K K + + ++ L+ + +S + M+ LL Sbjct: 171 KEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLL 230 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T R A+W++ID W IP MKM R HT+PL+ + +L+ K +S + Sbjct: 231 TAQRSFSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGY 290 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTAL----NEEGFPPDVIEA 359 +F S ++ ++ T+ + +R G HG R++ ST N+ D+IE Sbjct: 291 LFYSLRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMSSDIIEL 350 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LAHV+KN+++ AYN + L+++ +MQWW D + Sbjct: 351 CLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYL 384 >UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TYD6_MARAV Length = 412 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 122/398 (30%), Positives = 200/398 (50%), Gaps = 10/398 (2%) Query: 1 MARKTKPLTDTEIKAA--KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M R LT+T +K A +L DG GL L I+ +G + W+ +Y R K++ Sbjct: 1 MTRAANKLTETAVKHATFSKYGKRTKLADGAGLYLDIQKAG-RYWRLKY-RYGGKEKL-L 57 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW-NV 117 + G YP VSL +AR R E+K LLA +IDP H++ + EA TF +A W +V Sbjct: 58 ALGVYPDVSLKEARAKRDEAKRLLADNIDPVTHRQREKAERVEATATTFKGIALEWLEHV 117 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K +V R LE +P +G + EI+ ++ ++ ++ +G ++ RL Sbjct: 118 HKKNVGATTYPKNKRRLEMYAYPKLGRRPMAEIEPPDVLAILREIEGKGHVDNAHRLKTL 177 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTR 236 I +V YA +TG + ++ P K+ ++ PD++ ++ + T S + Sbjct: 178 IGQVFRYAVSTGRATRDVTADLRGILPAPNVKHHAAVTTPDEIADMLKKIDTYWGSPTVC 237 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 RP RW+EID++A+ K VPL+ A+ +L+ ++ Sbjct: 238 LALKLSPYLFLRPGNLRHMRWEEIDWDAA--TWTTDTTKNGEPLVVPLARQAIDLLKELQ 295 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPD 355 L+G RE++FPS +PM+ + AL R L G++ +HG R++A T L E GF + Sbjct: 296 ELNGNREWVFPSGAGKGRPMSENAITGALNRLELQGIMSAHGFRAMAKTVLTERLGFRTE 355 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 +IE +AH ++ RAYNR+ +L +R+ MMQ WAD + Sbjct: 356 IIEMQMAHRVRDVHGRAYNRTTWLPERQAMMQQWADYL 393 >UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25017 RepID=B0U0U5_FRAP2 Length = 398 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 124/402 (30%), Positives = 198/402 (49%), Gaps = 28/402 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T+IK K + ++ D GL L + +G+K WQ R+ + ++R G+YP+ + Sbjct: 2 LTETKIKKIKATGKEQRVIDTLGLYLRVDKNGNKTWQLRH--TINEKRKWFGLGSYPSTN 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFL--LVAERWWNVKKTSVTED 125 L++ARKL AE L + ID E + +AK ++ LVA+ KK S +ED Sbjct: 60 LNEARKLSAE----LRERID----NGEDILAKPDAKKVIYVKDLVAQYIEFQKKNSSSED 111 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + + + I P IG+ I IK + ++P+ +GA T ++ + + A Sbjct: 112 FIKKLTNISKNHIIPKIGNRDIQTIKRKDCIDVLEPLIDKGA--TRNKVLSALKGISRLA 169 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS-----TRCLFM 240 ++ LI+ P+ +I +A + + + MP I P L+ + + + +R Sbjct: 170 RHNELIENDPTHDIARALPQYKAQPMPHISPLHNKSLLKELLLDLDNYTKGNYISRYALK 229 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + RP E +WD D S IPA MKM +DH V LS A I+E +K L G Sbjct: 230 LLPYIVLRPIELVSLQWDFYDAENSRIIIPAEIMKMRKDHIVCLSRQAKQIIEELKDLQG 289 Query: 301 GREFIFPSRIKPNQP-MNSQTVNAALKRAGLGGV----LVSHGLRSIASTALNE----EG 351 G ++ FPS K N +N +++ A++ G G+ HG R I STA++E Sbjct: 290 GFKYFFPSYYKDNHDHINYESLAKAIRSMGYNGIDKPKQTLHGFRHIYSTAIHELQEQYH 349 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 F IE LAH DKN+ R +YN +D L +R +MQ +AD + Sbjct: 350 FSELAIELVLAHTDKNKSRASYNFADKLSERAKIMQVYADWI 391 >UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=B5JZM6_9RHOB Length = 411 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 193/387 (49%), Gaps = 21/387 (5%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDI 86 DG GL L + +SG+K W R + +RT+ G+ VSL++AR+ E++ L Sbjct: 41 DGHGLFLKVVTSGAKRWVQRIV--VRGKRTEIGLGSASLVSLAEARETALENRKLARAGG 98 Query: 87 DPQEHQK--EQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGD 144 DP + ++ E + +EA + W N K +A +LE FP + + Sbjct: 99 DPLQAKRTSEALLTFEEASRKVHKIHEPTWRNKK-------HAAQFLSTLETYTFPRMSN 151 Query: 145 ISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFE 204 + ++E+ ++ +QP+ ET +R+ QRI VM +A G P+ I +A Sbjct: 152 LKVSEVTTADVLAVLQPIWLEKP-ETAKRVRQRIGTVMKWAVANGWRQDNPAGAISQALP 210 Query: 205 KPQK--KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDF 262 K ++ K+ S+ D++ + +R++ +T+ +LT R E A W EID Sbjct: 211 KQKQPVKHRKSLPYDEVSGCLVAVRSSRAFNATKLALELTVLTACRSGEVRLAEWSEIDL 270 Query: 263 NASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVN 322 +EW IPA RMK +++H +PLS A+ +LE K L G +FPS P++ T++ Sbjct: 271 AKAEWTIPAQRMKASKEHRIPLSGRAVEVLEAAKALDDGTGLVFPSTT--GNPLSDMTLS 328 Query: 323 AALKRAGLGGVLVSHGLRSIASTALNEEGFPP-DVIEAALAHVDKNEVRRAYNRSDYLEQ 381 +K GLG + HG R+ T E +V EAALAH +N+ AY RSD E+ Sbjct: 329 KLVK--GLGYDVDVHGFRTSFKTWCQERTTTAREVSEAALAHSIQNKAEAAYARSDLFEK 386 Query: 382 RRPMMQWWADLVKAADSGSIVLTHLSK 408 RR +M+ W+ V A+ S VL ++K Sbjct: 387 RRKLMEQWSCFV--AEPSSAVLVRIAK 411 >UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8T8_ACIBT Length = 425 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/414 (27%), Positives = 188/414 (45%), Gaps = 31/414 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L DT++K KP+D Y+ D D L + ++ SG K+W ++ L K+ ++G YP++S Sbjct: 2 LKDTQVKNLKPQDKPYRKLDADRLYIEVRPSGKKVWIHKF--SLNKKEGSITYGEYPSIS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR A + LLAK I+P H+ E R + E + TF + W K +EDY Sbjct: 60 LAEARYYHARDRALLAKGINPVAHRNETARLALETEQETFKKYGDEWKEKHKIDKSEDYK 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET-VRRLCQRINEVMIYAQ 186 I L+ DI+P IG + ++ + ++ + R T ++L E Sbjct: 120 KLIEYGLKTDIYPVIGHLHPKDVTSKHVLLIINNTMERIRTSTRSQKLKPSTGETTAIVN 179 Query: 187 NT------------GLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS 234 T GL + P+ + ++ + + + ++ +L + + + + Sbjct: 180 KTFIGMIMRSCIMKGLAEVDPTYAVKGVIKRQKINHARPLSMKEIRELKERIPLYNGAQT 239 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR----------MKMNRDHTVPL 284 TR + T+ R E W +D+ P MK N+ H +PL Sbjct: 240 TRNALNFLFYTMLRTIEVRRLEWAWVDWENKTITFPERTFQEIIEGKRAMKNNKIHLLPL 299 Query: 285 SDGALAILEMMKPLSGGREFIFPSRI-----KPNQPMNSQTVNAALKRAGLGGVLVSHGL 339 SD A +IL+ ++ +F+F S + KP + + T+N AL + V H Sbjct: 300 SDQAFSILKEQYTITAKCQFVFSSPMQLTLGKPEKMLGRSTLNFALDALKMNDV-SPHDA 358 Query: 340 RSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 R+ AST LNE G IE L+H D ++ R YN + +L RR M+QW+AD + Sbjct: 359 RATASTYLNELGSDDRWIEKQLSHTDNDKTRATYNHAKWLRNRRSMLQWYADFL 412 >UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresistens RepID=C6RLT7_ACIRA Length = 405 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 118/407 (28%), Positives = 198/407 (48%), Gaps = 29/407 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRY-YRPLTKQRTKQSFGAYPAV 66 L D +IK K KD Y++ D GL L ++++GSK W++RY Y + K T G YP + Sbjct: 2 LNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPKMLT---IGPYPEI 58 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SLS AR E + +LAK++DP QK+ + ++ +A +TF ++ + K + ++++ Sbjct: 59 SLSYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEW 118 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAH--------TLVKAVQPVQARGALET--VRRLCQ 176 ++ R ++DI P IG+ I E+ ++ T+ + + + G ++ VR++C Sbjct: 119 YENRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICA 178 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 EVM YA T I P++ + +P + + ++ + + T+ Sbjct: 179 ---EVMQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQ 235 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAA----------RMKMNRDHTVPLSD 286 L ++ R E A+ ++ + IP MK NR H VPLS Sbjct: 236 NALRTALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLST 295 Query: 287 GALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 L I++ L ++FP + + T+N AL GLG + + H R+ AST Sbjct: 296 QMLEIIKEQLQLYPDSIYLFPGDDGISM-LGKNTLNEALVNMGLGHITM-HDFRATASTY 353 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LNE+ + D IE LAHVD + R +YN + +L+ RR MMQ AD + Sbjct: 354 LNEQNYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMMQHLADTI 400 >UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F7C9 Length = 374 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 114/387 (29%), Positives = 192/387 (49%), Gaps = 28/387 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T+I K + D DGL L + SGSK W++RY + T T ++ G+YP +S Sbjct: 2 LTNTKIHRLKTPTKLERHLDSDGLYLEVTKSGSKNWRYRY-KNHTGSWTMKALGSYPKIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR L + +V+ E K +F A W V K + Sbjct: 61 LEKARALLDDLEVV------------------AEYKCISFKETASEWL-VYKGYTSYKNK 101 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R +E + P +G+++I IK ++ ++ ++A+G LE RR+ ++++ Y Sbjct: 102 HLVHRRIENYLLPKLGNMTIANIKPKDILPILKQIEAKGHLELARRVQNILSQIFKYGVQ 161 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISM-STRCLFMWQLLT 245 + P+ + ++P ++MP+I + +L+ T+ +AS M S + Sbjct: 162 NLYCETNPAQPLQGCTKQPSVRHMPAIVEQSEFARLLATIDSASNLMPSVKLCLQLAPHV 221 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R A+ + IDF+ W IP + KM R+H +PL++ + +L+ + G E++ Sbjct: 222 FLRSQSIRMAKPEHIDFDRKLWVIP--KDKMGREHWIPLTEPVIEMLQTAIAQTNG-EYL 278 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 F + IKPN P++ T+N AL+ G+ V HG RS ST E P D+IE L H Sbjct: 279 F-NGIKPNSPLSENTLNHALRSLGVDKQTHVFHGFRSSFSTLAREHCRLPGDLIELQLGH 337 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWA 390 ++ N+V+ AY+RS LE+RR +M W+ Sbjct: 338 IEGNQVKAAYDRSQRLEERRELMDKWS 364 >UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=C7JAN4_ACEP3 Length = 404 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 109/379 (28%), Positives = 188/379 (49%), Gaps = 17/379 (4%) Query: 25 LYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAK 84 L DG GL L+ +K W FR+ P++ R + G+ +SL++ R+ E++ L+A Sbjct: 22 LCDGGGL-WLVAQGAAKSWFFRFTSPISNTRREMGLGSVHDLSLAEVRRKATEARHLVAA 80 Query: 85 DIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIW-RSLERDIFPAIG 143 +DP + +++ ++ TF +A+R+ + +W SLER +FPA+G Sbjct: 81 GLDPIDERRKLKAQRKKESGLTFSDIAKRYVKEMAPGWRNARSSTVWTSSLERHVFPAMG 140 Query: 144 DISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSV----NI 199 ++EI+ ++ ++P+ + ET R+ RI ++ +A+ G D ++ Sbjct: 141 GKLVSEIETEDVLAVLRPIW-KTTTETADRVRGRIERILDFARTHGWRDGENPARWRGHL 199 Query: 200 GKAFEKP----QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEA 255 KP + +++P++ + ++M + A +S + + + LT R E +A Sbjct: 200 ANILPKPSAVAKARHLPAVNRKDIGKVMAKLAQAE-GISPKAV-RFACLTAARSGEVRQA 257 Query: 256 RWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR--EFIFPSRIKPN 313 W EID W IPA +MK ++H VPLS GA+A+L+ + P R + +FP K Sbjct: 258 VWSEIDLVTKIWTIPAHKMKAGKEHRVPLSAGAIAVLQEVLPFRDKRAGDLVFPGG-KRG 316 Query: 314 QPMNSQTVNAALKRAGLGGVLVSHGLRS-IASTALNEEGFPPDVIEAALAHVDKNEVRRA 372 +P++ ++ AL A + HGLRS A E +P +V E ALAH ++V A Sbjct: 317 RPLSDVVLSKALHSAAGTKDVTVHGLRSTFRDWAAEETDYPGEVAEMALAHTISDKVEAA 376 Query: 373 YNRSDYLEQRRPMMQWWAD 391 Y R D +RR MM W D Sbjct: 377 YRRGDLFNKRREMMTAWND 395 >UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWJ5_ARCB4 Length = 410 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 188/409 (45%), Gaps = 25/409 (6%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K L D ++K AKP Y L+DG GL L + + +K+W+FRY +R K SF +Y Sbjct: 3 KNNQLQDIQVKQAKPTKETYYLFDGLGLYLEVTPNNAKIWKFRY--TYNGKRKKTSFQSY 60 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P VSL ARK R LL IDP E+ KEQ Q T++F + +W ++K+ Sbjct: 61 PKVSLKQARKKRDNYNELLFDGIDPIEYYKEQKELKQIEDTSSFKNIFTQWLEMEKSK-- 118 Query: 124 EDYADDIWRS--LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 A W+ +E DI P IG+ I +IK V V + + A T +L + + Sbjct: 119 SGLAQYQWKKTRIENDILPFIGNKKIKDIKIQD-VTNVLIEKNKTAPVTASKLFGYLKSI 177 Query: 182 MIYAQNTGLIDA--VPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCL 238 YA+ G I+ + +N Q + P I + L L++++ S + Sbjct: 178 YSYAKTKGYIEINLLSDINKTHIISSSQVISYPKITEKENLKDLVNSIYNYQGFYSVKNA 237 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN----RDHTVPLSDGALAILEM 294 L R +W IDF+ I MK+ D +PL+D + IL Sbjct: 238 LKLVLHLPLRAGNLCNLQWSNIDFDNKLLIISRDEMKVKDKNFDDFRMPLTDEVINILNE 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-----GGVLVSHG----LRSIAST 345 K +G ++FIF P+N ++ N ALK G G + HG RS+ T Sbjct: 298 QKSYTGYQKFIFLG-TNNRTPINVESPNKALKIMGFDDEVNGRKITLHGFRGTFRSLIDT 356 Query: 346 ALNEEGFPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLV 393 + F + E AL H +K++V RAY ++SDY+ Q P+M +W+D + Sbjct: 357 LDIDSNFSFETKERALDHHEKSKVVRAYTHKSDYINQLIPLMNFWSDYI 405 >UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X2_ACICJ Length = 410 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 185/387 (47%), Gaps = 31/387 (8%) Query: 24 QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLA 83 L+DG GL L +++ GSK W FRY + ++ S G VSLS+AR+ + + L+ Sbjct: 22 NLHDGGGLYLRVRADGSKSWAFRYT--MAGRKHWMSLGPLRDVSLSEAREQARQLRNLVR 79 Query: 84 KDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWR-SLERDIFPAI 142 DP ++E+ + E TF VA + + + W +L P I Sbjct: 80 DGFDPLAQRRERQHLAAEQTARTFDAVAAAYVEAHRAEWSNPKHAQQWENTLATYASPII 139 Query: 143 GDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA------------QNTGL 190 G ++EI + + + P+ A ET RL R+ V+ YA + G Sbjct: 140 GKRPVSEISLLDVRRVLDPIWAEKP-ETASRLRGRVEAVLAYATVHGWRSGDNPARWPGF 198 Query: 191 IDAV--PSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITR 248 +D + P + K+ ++ +P M +R ++S RCL + +LT TR Sbjct: 199 LDQIYAPKAKVRAV------KHHAALDYHDMPAFMAELRERE-AVSARCL-EFAILTATR 250 Query: 249 PAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE-FIFP 307 EA ARWDEIDF+A+ W IPA RMKM ++H VPL+ A+ +L M S R+ IFP Sbjct: 251 SGEARGARWDEIDFDAAVWVIPAPRMKMKKEHRVPLAPRAVELLREMAGRSPRRDGLIFP 310 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR-SIASTALNEEGFPPDVIEAALAHVDK 366 P +PM + A+ A L +HG+R S A FP ++ E ALAH++K Sbjct: 311 GGA-PGKPMTDVALAKAV--AVLRPGFTAHGMRSSFRDWAAEMTSFPREIAEVALAHINK 367 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 + AY R D L +RR +M+ WA+ Sbjct: 368 DRTEAAYQRGDLLAKRRQLMEAWANYC 394 >UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacter baumannii SDF RepID=B0VTB2_ACIBS Length = 388 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 114/403 (28%), Positives = 195/403 (48%), Gaps = 26/403 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++K+ KPK++ Y + DG+GL + + +G K W Y R KQ K G YP + Sbjct: 2 LSDAQVKSLKPKESRYSVADGEGLNISVFPNGKKKWVLSY-RQNGKQNQKM-LGEYPVMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT-EDY 126 +AR L A+ + + K V NS V E W ++ K+ T + Y Sbjct: 60 CKEAR--------LQARQLKLEYQGK--VANSPPVHK-----VIEEWLSIMKSQWTSKKY 104 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D + L + ++ I E++ + K ++ + A+G LET R + +V +A Sbjct: 105 YDTVEYRLAY-LTEDFKNLPINEVERKHISKKIKEIVAKGTLETASRALRLGKQVFDFAI 163 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 + D P + + + + P + ++P+ M+ + S + + T Sbjct: 164 ASDYTDRNPCTLVEDVIPEYESDSHPCLPASEMPEFFRRMQASHSSSIVKMAMLLVCYTG 223 Query: 247 TRPAEAAEARWD--EIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 TR E +ARWD E+DF W IPA RMK ++ VPL A+ + ++ + + Sbjct: 224 TRITELLKARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQIYALFKELESVKIDDGY 283 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 IF R KP + M S++V +KR G +V+HG RS+ ST NE F +VI+ +AH Sbjct: 284 IFKKRGKPYEYMTSESVLTMIKRMGYEDKMVTHGFRSLFSTHANESKLFRGEVIDYQIAH 343 Query: 364 VDK----NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 V+K ++ + YNR++Y ++R +M W+A+ V+ G+ + Sbjct: 344 VNKSTKADKTSKIYNRAEYWDERVELMTWYANEVEGWIKGAYL 386 >UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE42_ECOK1 Length = 418 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 117/406 (28%), Positives = 201/406 (49%), Gaps = 25/406 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY--PA 65 LTDT++K KP+D Y++ D DGL + + +SG+ FRY + +R G Y Sbjct: 2 LTDTKLKNLKPQDKLYKVSDRDGLYVAVLTSGTV--SFRYDYRINGRRETLVIGQYGRDG 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL++AR+ +K LL P +++ ++ + A+T F + + + K + D Sbjct: 60 ISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAET--FAVHTDSYM---KHVILAD 114 Query: 126 YADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + ++ ++RDI P +G+ + EI + + RG T + + I+ V + Sbjct: 115 STRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRH 174 Query: 185 AQNTGLIDAVPSVNI---GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 A + G P+ +I A KP+++ ++ P+++ T+ + + Sbjct: 175 ANDRGHGLFNPAADIKPSSIAIFKPRER---TLTPEEIGLFFRTLDAIGAMGTMKMALKL 231 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L+T+ R E A WDEIDF W IP+ RMK +R H + L A IL ++ +GG Sbjct: 232 VLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGG 291 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRA----GLGGVLVS----HGLRSIASTALNEEGFP 353 E++ P R +P+++ +N+ + R G + H +R AST L+E G+P Sbjct: 292 SEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYP 351 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 D IE ALAH K VR YN+++Y QR M+Q WAD++ + +G Sbjct: 352 SDWIEKALAHEQKG-VRAVYNKAEYARQRAYMLQQWADMIDSWING 396 >UniRef50_C8PFJ4 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PFJ4_9PROT Length = 383 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 122/405 (30%), Positives = 200/405 (49%), Gaps = 37/405 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + + PLT T++K KPKD Y + DG L + I SG+K + + Y + +R + Sbjct: 1 MPKLSVPLTATQLKNLKPKDKPYFVGDGSNLLIKIMPSGAKFFIYEYKQGAKYKRV--TI 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +SL++AR+ ++E K +V+ S + TF V E W K + Sbjct: 59 GRAGEMSLAEARQRKSELKT--------------RVKTSDKI---TFREVFEEWIKTK-S 100 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 ++ I R E + PA+G + I +I ++ A+ P+ + ET +++ +N Sbjct: 101 KISPKQLFWINRRFESLLLPALGSMQIADIGRKDIIGALSPLLSDEKQETAKKVLGALNG 160 Query: 181 VMIYAQNTGLIDAVPSVNIGKA--FEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRC 237 +A +D +I KA + Q ++ + + ++ L+ ++ + + Sbjct: 161 FYKFALLHEYVDHNIIADIDKATLIGRRQIRHFAYFKDEAEIRNLIKAVKGYFGNERIKV 220 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK- 296 ++ L T R A A WDEI WKIPA++MK +DH V LS +L + Sbjct: 221 CALFMLYTAVRGENARFATWDEI--KGDMWKIPASKMKNGKDHEVFLSSSVRRMLSDYRA 278 Query: 297 --PLSGGREFIFPSRIKPN-QPMNSQTVNAALKRAGLGGVLVS-HGLRSIASTALNEE-- 350 PL EFIFPS IK N +P++ TV + L+ G +++ HG R+ ST +E+ Sbjct: 279 SSPLQS--EFIFPS-IKSNVRPISDNTVRSMLRNLGFSNEMITPHGFRATFSTICHEKQD 335 Query: 351 --GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 G DVIE LAHV+KN+V+ AYN + L+QR +MQWW+D + Sbjct: 336 EHGQNSDVIELCLAHVEKNKVKDAYNHAKNLKQRAALMQWWSDFL 380 >UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V760_9PROT Length = 384 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 115/392 (29%), Positives = 182/392 (46%), Gaps = 26/392 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LT IK AKP++ Y +YD GL + I G+K FR+ L + G + Sbjct: 4 LTTVAIKNAKPEEKPYLIYDSKERGLHVHISVVGTK--TFRFKTKLDGKAKIIKLGDFKH 61 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW--WNVKKTSVT 123 ++L AR+ + V + IDP V+ E KT F V++ + W + Sbjct: 62 MTLEQARQRAFDLNVQIQNGIDPT------VQIVPEFKT--FAEVSKEFVAWKRDEFGRA 113 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 E L+ D+ PA + SI EI V ++ + AR ++ + + +N V++ Sbjct: 114 EGTIRKYQECLDNDLLPAFANTSIKEIHTKESVAVIEKINARSNSLAIKNI-EMLNMVVM 172 Query: 184 YAQNTGLIDAVPSVNI-GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 +A G D+ +N+ G EKP K P I P L + + RC Q Sbjct: 173 FAIQRGYRDSYTQLNLSGLIKEKPVK---PKIMPSSLKDTFDKIDQYP-TFIMRCAITIQ 228 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 R +E RW+EIDF +W +PA RMKM R H VPL+ + +L +K +G Sbjct: 229 FHVFLRGSEIMGGRWEEIDFEKKQWVVPADRMKMKRTHIVPLTSQTIELLTKLKSATGDS 288 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 F+FPS K + + ++ A + A L +V HG R++A T + + P ++E L+ Sbjct: 289 AFLFPSS-KSVEHIGRDALSKAFRAADLK--IVPHGCRTLAGTWMRNNKYLPHLVETQLS 345 Query: 363 HVDKNEVRRAYNRSD---YLEQRRPMMQWWAD 391 H + N++ AY YL++RR MMQ W++ Sbjct: 346 HCESNQIAAAYQTEPHMLYLDERRGMMQEWSN 377 >UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7T3_LARHH Length = 416 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 127/428 (29%), Positives = 202/428 (47%), Gaps = 39/428 (9%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLL-IKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTD + +P D GL L+ +K G+ W FR+ P +K+R G YPA+ Sbjct: 4 LTDRQAANIRPTDKAKAHGGVVGLWLIPLKEKGTGRWIFRFTSPTSKKRRDLGLGKYPAI 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNS---------QEAKTNTFLLVAERWWNV 117 ++ A +L +++L+ + IDP +H++EQ + ++A +T ++ W N Sbjct: 64 TIKQAGELGEAARLLVLQGIDPIDHKREQEAAAEAANERITFEQAAIHTHETLSPGWSNR 123 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 ++ D SL R +FP IGD + ++ + P+ ET R+ QR Sbjct: 124 HASA-------DWINSLRRHVFPKIGDKPVADLVRRDFAAVLLPIWLV-LPETAARVRQR 175 Query: 178 INEVMIYAQNTGLI-----DAVPSVNIGKAFEKPQKK-NMPSIRPDQLPQLM--HTMRTA 229 + VM + LI D+ S + K K +++ + P++ LP + H Sbjct: 176 MQTVMEWCLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAAHLGEGR 235 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 +S++ R + + +LT R E WDE+D +A W IP RMK H VPLSD A+ Sbjct: 236 PVSVA-RPMLEFLILTAARSGEVRGMVWDEVDLSAKVWTIPGERMKAGATHQVPLSDRAM 294 Query: 290 AILEMMKPLSGGREFIFP---SRIKPNQPMNS--QTVNAALKRAGLGGVLVSHGLRSIAS 344 AIL + +FP R+ + + V+A G + HG RS Sbjct: 295 AILRQQRERHPFSAMVFPPNRGRVVSDMTLTRYLHEVDAPSDTEGRHATV--HGFRSTFK 352 Query: 345 TALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 E G+P ++ E ALAH+ KN+V AY+RS LEQRR +MQ WAD V++ +G I Sbjct: 353 DWAIEHGYPGELSEKALAHMIKNKVEAAYHRSSQLEQRRALMQAWADYVESGRAGGI--- 409 Query: 405 HLSKIRLV 412 + IR++ Sbjct: 410 --TNIRMI 415 >UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus RepID=C7JFF4_ACEP3 Length = 434 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 118/395 (29%), Positives = 201/395 (50%), Gaps = 25/395 (6%) Query: 11 TEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSD 70 + +K ++ K D L DG GL L++ + GS+LW+FR+ P+T +R + S G+ ++SL+D Sbjct: 45 SALKVSRHKSGD--LCDGGGLWLVV-TGGSRLWEFRFKSPVTGKRRQMSLGSAYSLSLAD 101 Query: 71 ARKLRAESKVLLAKDIDPQ-EHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADD 129 AR+ A+ + + +DP E +KE+ E K TF VA ++ + + + + Sbjct: 102 AREKAAKCRGMTENRLDPIIEREKEKAARELE-KGLTFAEVAAQYIKAQTPAWKDHRSPA 160 Query: 130 IW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA--- 185 +W SL + +FP G+ S+ ++ ++ A++P+ ET R+ RI ++ YA Sbjct: 161 VWTSSLTQHVFPIFGEKSVRDVDTQDVLTALRPIWTE-KTETSGRIRGRIERILDYARVQ 219 Query: 186 -----QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +N SV + + + ++ + + ++M +++ + + F Sbjct: 220 QWREGENPARWRGHLSVMLPAPSKITKVQHHKAAEWKDISEIMKALQSINGMAAKAVRFC 279 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP--- 297 LT R E A W EID + + W +PA +MK R+H VPLS A+ +L+ + P Sbjct: 280 --CLTAARSGEVRNAVWSEIDLSEALWVVPAEKMKAGREHRVPLSGDAVKVLQEVLPHRD 337 Query: 298 -LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPP-D 355 +SG + +FP K +P++ V+ AL A + HGLRS E + Sbjct: 338 AVSG--DLLFPG-AKRGRPLSDVAVSKALHHAAGTKEVTVHGLRSTFRDWAGETKVCSRE 394 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 V EAALAH K++V AY RSD L+ RRP+M+ WA Sbjct: 395 VAEAALAHAGKSKVEAAYFRSDLLDLRRPLMEEWA 429 >UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3P2_BURTA Length = 409 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 121/399 (30%), Positives = 193/399 (48%), Gaps = 19/399 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D + ++AKP++ Y+L DG GL LL+K +G K WQFRY +P ++ Q G YP ++ Sbjct: 6 LRDLQCRSAKPRERVYRLSDGGGLALLVKPNGLKYWQFRYMKPDGREGLIQ-IGPYPRIT 64 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQV--RNSQEAKTNTFLLVAERWWNVKKTSVTED 125 L AR R E +V + DP +K++ R A+ F A + + Sbjct: 65 LEAARAARNEHRVAVQGGDDPATLRKQEKARRKIDAARALNFKQCATAFIEARSAEWVNP 124 Query: 126 YADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 W +L +P IG + +I + K ++P+ ET R+ RI V+ + Sbjct: 125 KHTQQWTNTLSTYAYPIIGALRPADIDTDLVRKVLEPIWLTKN-ETASRVRGRIESVLDW 183 Query: 185 AQNTGLID----AVPSVNIGKAFEKPQK----KNMPSIRPDQLPQLMHTMRTASISMSTR 236 A+ GL D A S ++ + P K K+ ++ ++ + +R + + R Sbjct: 184 AKVRGLRDGENPARWSGHLDQLLAAPGKVQKPKHHAALPFTEIGAFVAELR-GMVGTAAR 242 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 L + +LT R E AR DE D +A W +PA RMK R H VPLS AL +L+ + Sbjct: 243 AL-EFTILTAMRTGEVIGARHDEFDADAQLWTVPAERMKAKRAHRVPLSSSALELLKTL- 300 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRS-IASTALNEEGFPPD 355 P S +F ++ +P+++ + L+R G + V HG RS A F + Sbjct: 301 PTSADSPVVFEG-MRARRPLSNMAMLQVLERMKRGALTV-HGFRSTFRDWAAECTPFSNE 358 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 V+E ALAH +++ AY R D ++RR +MQ WAD ++ Sbjct: 359 VVEMALAHAIRDKTEAAYRRGDLFDKRRTLMQAWADHIE 397 >UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EVM1_ECOLX Length = 396 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 124/402 (30%), Positives = 192/402 (47%), Gaps = 29/402 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP--A 65 LTDT ++ KPK+ Y++ D DGL + + +G+ FRY + ++ +FG Y Sbjct: 2 LTDTRLRHLKPKEKLYKVNDRDGLYVAVTPAGTI--SFRYNYSINGRQETVTFGRYGVGG 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAK-TNTFLLVAERWWNVKKTSVTE 124 ++L++AR+ E+K ++A P +E+ R+ K TF AE+W ++ + E Sbjct: 60 ITLAEARERLNEAKKMVASGRSPA---REKARDKARIKDAETFGAWAEKW--LRGYQMAE 114 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 D +R++ +TEI L + RGA T + + +V + Sbjct: 115 STRDMRRSVYQRELKSKFAQQKLTEITHEDLRALTDNIVERGAPATAVHAREIVLQVYRW 174 Query: 185 AQNTGL-----IDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 A G D V +I K FE P+ + ++ P ++ + M + S R Sbjct: 175 AIERGQKVENPSDLVRPASIAK-FE-PRDR---ALTPVEIGLMYRYMERVGTTPSIRAAV 229 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 LLT+ R +E A W EI+F+ + W IP RMK H V LS A+ I+ +K + Sbjct: 230 KLLLLTMVRKSELTNATWKEINFSEALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFA 289 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAAL--------KRAGLGGVLVSHGLRSIASTALNEEG 351 G +FI PSR + PM+S T+N L K L H LR AST L+E G Sbjct: 290 GSSDFILPSRYDSDAPMSSATLNRVLTLTYRLAQKEGDLLPKFGPHDLRRTASTLLHEAG 349 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 + D IE LAH K VR YN+++Y EQR M+Q WA+++ Sbjct: 350 YNTDWIEKCLAHEQKG-VRAVYNKAEYREQRAEMLQDWANMI 390 >UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QCE7_9RHIZ Length = 418 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/378 (31%), Positives = 188/378 (49%), Gaps = 21/378 (5%) Query: 25 LY-DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLA 83 LY DG GL L +K SG++ W FRY ++ G+ +VSL+ AR L +++ L Sbjct: 21 LYPDGAGLYLRVKPSGARSWVFRYMH--DRKPRYLGLGSAASVSLATARSLAGDARRQLD 78 Query: 84 KDIDPQEHQKEQVRNS--QEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRS-LERDIFP 140 DP E ++ R + +A+ TF AE + + S + W S L R ++P Sbjct: 79 LGQDPIEAKRAAERETAADKARAMTFKECAEAYMAAHEPSWKNAKHCEQWHSTLRRYLYP 138 Query: 141 AIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSV--- 197 G I++ + + +A+QP+ ET R+ RI V+ +A+ G Sbjct: 139 KFGGIAVALVTTEMVFEAIQPIW-HSMPETASRVRGRIEVVIDWAKARGAFSGENPARWR 197 Query: 198 -NIGKAFEKPQK----KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEA 252 ++ KP K ++ ++ D LP LM +R A+ +++R L + +LT R EA Sbjct: 198 GHLANLLPKPSKVAKVEHHAAMPFDDLPALMSELRAAT-GLTSRAL-EFTILTAARTTEA 255 Query: 253 AEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKP 312 A+W E D W +PA RMK +DH VPLS A+ I++ ++ + EF+FP KP Sbjct: 256 LGAQWSEFDLEKKIWTVPAVRMKAGKDHRVPLSTRAVEIIKELETVKRN-EFVFPGE-KP 313 Query: 313 NQPMNSQTVNAALKRAGLGGVLVSHGLRS-IASTALNEEGFPPDVIEAALAHVDKNEVRR 371 + +++ ++ L+R G + V HG RS A FP ++E ALAH +++V Sbjct: 314 GRHLSNMSMLMLLRRLKRGELTV-HGFRSTFRDWAAETTSFPNFIVEMALAHAIESKVEG 372 Query: 372 AYNRSDYLEQRRPMMQWW 389 AY R D LE+RR +M W Sbjct: 373 AYRRGDLLEKRRALMVAW 390 >UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family n=4 Tax=Rhodobacterales RepID=Q5LS43_SILPO Length = 406 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 119/382 (31%), Positives = 184/382 (48%), Gaps = 23/382 (6%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDI 86 DG GL L + +G+K W R + +RT+ G+ VSL++A + +++ L Sbjct: 37 DGHGLFLKVDDTGAKRWVQRIV--IRGKRTEIGMGSASLVSLAEASETALQNRKLARAGG 94 Query: 87 DP-QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDI 145 DP Q + Q + E + E W KK +A +LE FP IG + Sbjct: 95 DPLQAKRTAQALLTFEEAARKVHKIHEPTWRNKK------HAAQFISTLETYTFPRIGKL 148 Query: 146 SITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK 205 ++E+ ++ +QP+ ET RR+ QRI VM +A G P+ I +A K Sbjct: 149 KVSEVATADVLAVLQPIWLEKP-ETARRVRQRIGTVMKWAIANGWRTDNPAEAISQALPK 207 Query: 206 P-----QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEI 260 +K +P D++P+ + T++ + T+ +LT +R +E +A W E Sbjct: 208 QIDTQQHRKALPY---DKVPEFLETLKASDAGDFTKLALELVVLTASRSSEVRKAEWSEF 264 Query: 261 DFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQT 320 D W PA RMK ++H VPLS AL IL + L G +FP K +P++ T Sbjct: 265 DLEQGIWTRPAERMKSKKEHRVPLSPRALEILIEARELCTGEGLVFPG-TKIGKPLSDMT 323 Query: 321 VNAALKRAGLGGVLVSHGLR-SIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYL 379 + K LG + HG R S + A P DV EAALAHV K++ AY RSD+ Sbjct: 324 LLKLTK--ALGYDVDVHGFRTSFKTWAQERTNTPRDVSEAALAHVLKDKAEAAYARSDFF 381 Query: 380 EQRRPMMQWWADLVKAADSGSI 401 E+RR +M+ WA + +++ GS+ Sbjct: 382 EKRRKLMERWASYI-SSNLGSM 402 >UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family n=1 Tax=Citreicella sp. SE45 RepID=D0D2S4_9RHOB Length = 479 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 120/396 (30%), Positives = 192/396 (48%), Gaps = 27/396 (6%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K LT +KAA + +DG GL LL+K +GS+ W R + +R + G+ Sbjct: 102 KALTAQRVKAATDPG---KYFDGHGLYLLVKPNGSRSWVQRIV--IRGKRREMGLGSASL 156 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQ--VRNSQEAKTNTFLLVAERWWNVKKTSVT 123 V+L++AR+ ++ + DP + ++E V +EA + + W N K Sbjct: 157 VTLAEAREAALANRKVARAGGDPIQARQEALAVLTFEEAARKVYEMHRPTWRNPK----- 211 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 +A +LE FP IG + + ++ + +++ + P+ ET RR+ QRI VM Sbjct: 212 --HASQFINTLETYAFPKIGAVKVGDVNTNDVLRVLTPIWTTKP-ETARRVRQRIGMVMK 268 Query: 184 YAQNTGLIDAVPSVNIGKAF-----EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 +A G P+ I +A K +K MP ++P + T++ + T+ Sbjct: 269 WAVAKGWRQDNPAEAISQALPKHDRRKAHRKAMPYA---EVPGFIATVKASKAGALTKLA 325 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 + +LT R E A W EID A+ W +PA RMK R+H VPLS AL IL + + Sbjct: 326 MEFLILTAARSGEVRGASWSEIDSEAAIWTVPADRMKAKREHRVPLSPRALEILSEARAI 385 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR-SIASTALNEEGFPPDVI 357 S G + +FP + +P++ T++ + LG + HG R S A + P +V Sbjct: 386 SDGSDLVFPGS-RRGRPLSDMTLSKLTRE--LGFAVDVHGFRTSFRMWAQEQTDAPREVA 442 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 EAALAH +N+ AY RSD E+RR +M+ W+ V Sbjct: 443 EAALAHTIRNQAEAAYARSDLFERRRSLMERWSTSV 478 >UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q013_9GAMM Length = 455 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 119/411 (28%), Positives = 201/411 (48%), Gaps = 21/411 (5%) Query: 4 KTKPLT-DTEIKAAKPKDADYQLYDGDG---LTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 K KP+T D I + K + +Y L G L L+++ + +K W FRY P T + + S Sbjct: 3 KRKPITSDRSISSHKAEAKEY-LVPVKGRPKLYLMVRPNETKSWLFRYTSPNTGKSQRIS 61 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG YP+++L+ A + E + LL+K+IDP++++K + E TF A+ +++ K Sbjct: 62 FGIYPSITLARAHDIWQEYQDLLSKNIDPRDNRKAVKQALLENDDRTFGRFADEYFDTLK 121 Query: 120 TSVTEDYADDIWRSLE--RDIFPA--IGDISITEIKAHTLVKAVQPVQARGA-LETVRRL 174 T + + L+ +D F I +I+ ++ + + Q V+A G E R Sbjct: 122 TILKPNTLQRKLNCLKLLKDSFAETPIDEITPPQMLSMLIDVQNQFVKADGKPTEKAERC 181 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMH---TMRTAS 230 +++ YA G P+ + KP + P+ I+PD+ +L+ +++ Sbjct: 182 ASIASDIFKYASARGFCSTDPASMVKSQLIKPVYGHRPAIIQPDKFAKLLQDIDSLKDKV 241 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIP----AARMKMNRDHTVPLSD 286 S + L + +L + R + RW ++DFN ++W+ + M RD VPL Sbjct: 242 DSNTNSSLRLLPMLFV-RNGDLRRMRWADLDFNEAKWRFQPLKGEGKEHMVRDMVVPLPR 300 Query: 287 GALAILEMMKPLSGGREFIFPS-RIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST 345 A+ IL+ ++G EF+F S K N ++ T N LK G V HG R+ A T Sbjct: 301 QAIEILQHQYKINGHSEFVFYSPSAKKNGIISDNTANKHLKELGYQNVHCVHGFRASAKT 360 Query: 346 ALNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 L E+ +P ++E L H+ K++ AY R ++LE R MMQ WAD + A Sbjct: 361 MLQEQLKYPAVIVEMGLGHITKDQNGTAYGRFEFLEDRAEMMQTWADYLDA 411 >UniRef50_B9KC61 Site-specific recombinase, phage integrase family n=5 Tax=Campylobacter RepID=B9KC61_CAMLR Length = 392 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 119/404 (29%), Positives = 198/404 (49%), Gaps = 36/404 (8%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGD----GLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 K LTD+ +K+ K + + D GL + + SG KL++ R T + Sbjct: 3 KINKLTDSFLKSVKCDNGKKFIKFSDPSIKGLYVFVYPSGRKLFKTR-----QANDTYIT 57 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G YP +SL++ R++ S L AK + + N++ K +L E N +K Sbjct: 58 LGEYPLLSLAELREIAINSHKLKAKG--------QNISNAKRLKFG--VLYDEVLENARK 107 Query: 120 TSVTEDYADDIWRSL--ERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 +++ A I R L + IF ++ +I +IK +V ++ ++ + A T+++ Sbjct: 108 SNLA---AKTIQRGLSYKEGIFKSLEYKNINDIKRVDIVNILKTIEHKSA--TLQKAKIW 162 Query: 178 INEVMIYAQNTGLIDAVPSVNIGK--AFEKP-QKKNMPSIRPDQ-LPQLMHTMRTASISM 233 IN+V YA +I+ P +I F+KP Q + P++ + + + ++T+ + I Sbjct: 163 INKVFEYALQLEIIENNPVASIKNNIVFKKPNQVIHQPTLLDESDIKEYINTLIHSDIKQ 222 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 S + L ++ LLT RP +A WDEIDF W I A +MKM ++H + LS A++IL+ Sbjct: 223 SHKNLMLFVLLTAQRPGNVIKATWDEIDFKNEIWTISAQKMKMRKEHNIALSKQAISILK 282 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHG----LRSIASTALNE 349 + +++F K + T N KR G G+ +HG RSIA+ E Sbjct: 283 NQYAIKVN-DYVFAGSSKKGCNSENITCNTN-KRLGYKGIQSAHGFRAMFRSIANEKQLE 340 Query: 350 EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 G D+ E LAH KN + +AYNRS +E +R +MQWW D + Sbjct: 341 HGVSMDIAEQCLAHEQKNAILKAYNRSKNIELKRILMQWWGDYI 384 >UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UFB2_9BURK Length = 431 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 114/407 (28%), Positives = 194/407 (47%), Gaps = 29/407 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R+ PLT+++++A +P+ A Y + DG+GL + + ++G+K+W+FRY K++ + Sbjct: 29 MPRQAVPLTESQVRALEPRAARYSVADGNGLVIEVMTTGTKVWRFRYSLN-GKRQPLATI 87 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G Y +SL AR + L+A+ I P + EAK + AE + + Sbjct: 88 GDYRMISLRVARAKAQKYAELVAQGISPVATARRD--RGAEAKADVLREAAELYMATEMA 145 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARG----ALETVRRLCQ 176 +++Y R+L++D+ PAIG + + + A +V +++RG AL T R + + Sbjct: 146 GKSDEYRRTTRRALDKDVLPAIGGLPVKSVTAQHVVAICDSIKSRGSPKMALHT-RNVIK 204 Query: 177 RINEVMIYAQ--NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS 234 R+ E +I Q VP+ +I FE + + D++ +H + T+SI Sbjct: 205 RLYEYLIARQLATANPAQVVPARSIA-TFESRTR----VLSGDEIGATLHAIDTSSIRRP 259 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 + +LT+ R ++ E+ W+E D + W+IPAAR+K + D V L A+ +L Sbjct: 260 LKIALHLLVLTMVRKSDLVESTWEEFDLEKASWRIPAARLKQDADQLVYLPQQAVTLLRE 319 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFP 353 + F+FPS ++P+ T+N A+K GL V H R AS L E Sbjct: 320 LHRARAATRFVFPSVRGDDRPIAKSTLNQAVKALGLDVEHFVLHDFRRTASVHLRE---- 375 Query: 354 PDVIEAALAHVDKNEVR-----RAYNRSDYLEQRRPMMQWWADLVKA 395 A A DK+ + R + + R + Q WAD V A Sbjct: 376 ----MARHAQEDKSSAQTRQHARHVEAASAAAEARQIAQRWADFVDA 418 >UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobacteria RepID=A9VZC1_METEP Length = 412 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 122/400 (30%), Positives = 189/400 (47%), Gaps = 21/400 (5%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K LT +++A K + DG+GL L+++ SGSK W R + +R G Sbjct: 20 KALTTVQVRALK---VPGRYADGNGLYLVVEPSGSKRWLLRTI--VQGRRRDIGLGGAGL 74 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V+L++AR+ + L DP R A TF AE+ K S Sbjct: 75 VTLAEAREKALAYRKLARDGGDPLAE-----RRKARATVPTFAEAAEQVHEEHKASWKNP 129 Query: 126 YADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPV-QARGALETVRRLCQRINEVMI 183 W +L P +G + +I+ +++A+ P+ +G ET RR+ QRI V+ Sbjct: 130 KHAAQWITTLRTYANPHLGARRVDQIETPDVLRALSPIWLTKG--ETARRVRQRIGTVLD 187 Query: 184 YAQNTGLI---DAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +A+ G + V SV G + + ++ ++ ++P + ++++ + R F Sbjct: 188 WAKAAGHRTGDNPVESVAKGLPKQGERDEHHAALPYAEVPAFVTRLQSSDHGEAARLAFE 247 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + +LT R +E A W EID + W +PAARMK R+H VPLS +L I+ K L+G Sbjct: 248 FLILTAARTSEVLRAEWREIDEAEALWTVPAARMKAGREHRVPLSKRSLEIVRRAKLLAG 307 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR-SIASTALNEEGFPPDVIEA 359 FIFP R +PM++ AL+R L + +HG R S A P +V E Sbjct: 308 DSAFIFPGR-STGKPMSNMVFLMALRRMKL--TVTAHGFRSSFRDWAAEATSLPREVAEM 364 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 ALAH +N V AY R D L +RR MM+ W+ V + G Sbjct: 365 ALAHTIENRVEAAYRRGDLLAKRREMMEQWSTFVASKPKG 404 >UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZM1_SULD5 Length = 416 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 116/406 (28%), Positives = 186/406 (45%), Gaps = 18/406 (4%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T LTD EIK KP+D Y D +GL +LI G K+W+F Y P ++ K +FG YP Sbjct: 6 TSLLTDKEIKNFKPEDKPYIKSDINGLRILIHPDGRKIWEFVYTSPTLYKKRKSTFGTYP 65 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +L +AR R L+ + IDP + Q+E+ + K + F V W+ +++ + Sbjct: 66 KTTLKEARDKRETYLNLIKQGIDPIDAQREEKAEVKLQKESDFSNVVNLWFQSQESHIVH 125 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + P + SI EIK LV+ ++ ++A ET +RL +++ + Sbjct: 126 STYKKKRALFDTTVIPVLKHKSIAEIKHDELVQIIK-IKAIQTPETAKRLLGYFHDLWQF 184 Query: 185 AQNTGLID--AVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMW 241 A G D VP+++ K KK+ I P L QL++++ T +ST+ + Sbjct: 185 ACTHGYCDFNIVPNIHAKSVLPKIVKKHYACITDPSILKQLVNSIYTYGGHISTKNALKF 244 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR--DHTVPLSDGALAILEMMKPLS 299 L R +W +DF IP MK D +PLSD A+AIL+ + Sbjct: 245 VLHVPLRAGNLVSLKWAYVDFEKHLITIPRKEMKAKSGDDFILPLSDEAIAILQEQYLYT 304 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAG-----LGGVLVSHG----LRSIASTALNEE 350 +EF+F + ++ T + AL+R G LG H RS+ T E Sbjct: 305 SHKEFVFVA--DNGLHIDEVTPSRALQRMGFNNETLGNKQRLHSFRATFRSLVDTHQMEH 362 Query: 351 GFPPDVIEAALAHVDKNEVRRAYN-RSDYLEQRRPMMQWWADLVKA 395 + E L H+ + V RAY ++ Y E+ R ++ WW+ + A Sbjct: 363 RSSYEAKEKVLDHIVGSGVERAYTQKAIYTEEMRLLLTWWSGYILA 408 >UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJP3_HIRBI Length = 395 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 130/398 (32%), Positives = 194/398 (48%), Gaps = 25/398 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D + K AK + DG GL L +K +G++ W F Y +R G YP+VS Sbjct: 9 LSDLKCKRAKTG----RHSDGGGLYLNVKQTGARNWLFIYR--WGDKRPSIGLGGYPSVS 62 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS+ARK A + L + ++ V N+ E + F A R + K Sbjct: 63 LSEARKQAAMCRDWLNQTPRKDPKKEWMVLNAPEVRIEPFGPFALRHIDAIKGDFRNAKH 122 Query: 128 DDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 WRS LER P I + EI+ ++K ++P+ A ET RR+ RI V+ A+ Sbjct: 123 IAQWRSTLERYAEP-IWAKPLNEIEVDHVLKCLEPIWATKN-ETARRVRGRIEAVLESAR 180 Query: 187 NTGLI-DAVPSVNIGK-----AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 G+ D P+ G+ ++P++K++ ++ DQ+ T+R S + F Sbjct: 181 VRGMREDPNPASWNGQLKHVLGRKRPKQKHLAALEYDQMHAFWQTLRQKSGIGALALQFT 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +LT R E A W+EID A W IPA RMK + H VPLS ALAI++ + Sbjct: 241 --ILTAARSGEVRGATWNEIDIEAGIWSIPAERMKAEKPHMVPLSQAALAIIDHISKARQ 298 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGL----GGVLVSHGLRSIAST-ALNEEGFPPD 355 G E IF ++ +P++ T+ AL+ L G + +HG RS S A NE FP + Sbjct: 299 G-ELIFMG-MRAGKPISDMTMTKALRDMKLTNSQGEAVTAHGFRSTFSDWARNETDFPRE 356 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 +IE +LAH +V AY R +E+RR +M+ WA V Sbjct: 357 LIEESLAH-SLGKVEAAYRRGQAIERRRALMEAWALYV 393 >UniRef50_A6Q4N1 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4N1_NITSB Length = 412 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 115/417 (27%), Positives = 198/417 (47%), Gaps = 28/417 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + +PL D +++ AKPK+ +Y+L DG+GL +LIK +G K+++ Y +R + Sbjct: 1 MPKSIRPLNDLQLRNAKPKEKNYKLRDGEGLYILIKPNGRKIFRLDYV--YAGKRNTYTI 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ-EAKTNTFLLVAERWWNVKK 119 G YP +SL+ ARK++ E K L+ IDP +++EQ R + EA V ER+ K Sbjct: 59 GDYPQISLAQARKIKYEVKELIKNGIDPNRYKQEQKRIKELEANKKFTSFVIERFIQHKA 118 Query: 120 TSVTE-DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPV---------QARGALE 169 V++ + + I P IG++ I E+ ++K V+ ++ G Sbjct: 119 KEVSKARLQKNYINTFANYITPFIGEVKIDEVTKQDIIKIVKNTYSTKLQKDNRSTGKTY 178 Query: 170 TVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF----EKPQK-KNMPSIRPDQLPQLMH 224 R + + + + +A + P+V I KP + K + + R ++ Q + Sbjct: 179 KAREVYRLLKSLFDFAIHNDYTQTNPAVGIDIDSLIPKHKPTRHKAVTNERIKEIYQKIC 238 Query: 225 TMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM-NRDHTVP 283 +++ R + LT R A +WD DF+ PA MK N+ +P Sbjct: 239 SLQNPYF----RLPLQYIALTAVRFGNVANLKWDYKDFDKRVIIYPAEAMKTKNQPFRIP 294 Query: 284 LSDGALAILEMMKPL-SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRS- 341 L+D + +++ K + S E +F S I ++P++ T+ LK HG RS Sbjct: 295 LTDAIVKVIQQAKAIASPYSEIVFGSPINAHKPISDNTLRKVLKIDLNEPEQDLHGFRSS 354 Query: 342 ---IASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 IA E G + IEA L H ++V ++Y RSD+LE R+ ++ WWA+ + + Sbjct: 355 FETIALEHQKEHGCSFEAIEAQLHHNIGSKVTQSYLRSDFLEDRKELLNWWANYLNS 411 >UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4A7S2_9GAMM Length = 412 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 121/393 (30%), Positives = 187/393 (47%), Gaps = 37/393 (9%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDI 86 D +GL LL+ GSK W +RY +R + G YPAVSL+ AR R ++ + Sbjct: 24 DAEGLYLLVARGGSKNWIYRYQHE--GRRRELGLGGYPAVSLAKARMRRDAARDQRQQGH 81 Query: 87 DPQE---HQKEQVRNSQEAKTN-------TFLLVAERWWNVKKTSVTEDYADDIWR-SLE 135 DP E Q+ Q+R A+T TFL VA+ + + T WR +L+ Sbjct: 82 DPLEVRDRQRAQLRAQMAAETAERERAAMTFLRVADEFIDNNAAGWTNRKHGQQWRNTLK 141 Query: 136 RDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTG------ 189 FP +G + + E+ +++ + P+ ET +RL RI V+ YA G Sbjct: 142 TYAFPILGVVPVGEVTTDQVLQVLTPIWTE-KTETAKRLQGRIERVLDYATTKGHREGDN 200 Query: 190 -------LIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 L + +P GK ++ +P + +L + + TA+ Sbjct: 201 PARWRGHLDNVLP--RPGKVHRVEHQRALPYLEAPELAAKLTDVDTAAGRALLL-----T 253 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LL TR +E EA W EID + EW+IPA RMK ++H +PL D A+A+L+ G R Sbjct: 254 LLCATRTSETLEATWSEIDLDRKEWRIPAVRMKAGKEHRIPLCDAAVAVLKTQSVHQGER 313 Query: 303 -EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAA 360 +++FP + K + +++ + LKR HGLRS + E+ +P + E A Sbjct: 314 GDWVFPGQ-KRGKCLSNMAMTNVLKRTDWLERTSVHGLRSTFRDWVGEKTRYPERMAEVA 372 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LAH ++V+ AY R+D +EQRR MM WA + Sbjct: 373 LAHQLTDKVQAAYFRADLMEQRREMMNEWAAFL 405 >UniRef50_B4WZP4 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZP4_9GAMM Length = 400 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/411 (26%), Positives = 197/411 (47%), Gaps = 34/411 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ-SFGAYPAV 66 LT +++ A+P DY+L+D GL LL+++ G++ W+ Y R+K + G P V Sbjct: 3 LTSADVRNAEPLQKDYKLHDDKGLYLLVETDGNRTWKLSYR---FDGRSKVITLGPCPEV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-VKKTSVTED 125 +LS AR+LR E++ L+A IDP + R TF VA W V + V+E+ Sbjct: 60 TLSFARQLRDEARELIADGIDPISRCVK--REVFSPSVETFEAVARDWLERVYRLEVSEE 117 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 R +E + +IG ++E+ L + A G L+ +R+ + +A Sbjct: 118 QFRRTKRQMENYLIASIGKRVVSEVTPEDLKSLAAALGAEGHLDRGKRVLGIGKRIYTHA 177 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ--- 242 ++TG+ + + + + P+ + + R + +++ L W Sbjct: 178 RDTGVAGYQQTGALRRRLTGSGTE----------PEFLLSTREQILDLASGVLGQWSRTT 227 Query: 243 --------LLTITRPAEAAEARWDEIDFNASEWKI---PAARMKMNRDHTVPLSDGALAI 291 + + RP+E ARW ++D +A EW+I ++ TVPL A+ + Sbjct: 228 TTAALKLTVWLLARPSEIVNARWSDMDLDAGEWRIHRNSTGSPTGSKIITVPLPRQAVEL 287 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG 351 L ++P++G +E+IFP + + + T++AALK+ + + LR++A+TAL E G Sbjct: 288 LREIEPITGRQEYIFPGTRDRKKHLGASTLSAALKKVTRTTPVSTDNLRTLAATALGELG 347 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 + + I++ L + +E +R YL++RR M+Q WAD + G + Sbjct: 348 YQAEQIQSQLLNQTGDE---PADRQTYLDKRREMLQAWADYLDNTAIGKVT 395 >UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=A4F5J8_9BACT Length = 390 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 198/388 (51%), Gaps = 28/388 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD IKA KP + Y++ D DGL L + SG+ ++F Y R +Q+T + G Y ++ Sbjct: 3 LTDKAIKALKPGEKTYKVADRDGLYLSVAPSGTMSFRFNY-RYNNRQQT-VTLGKYGEIT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ ++K LA I P + +K++++N+ N+F + +++ ++ V + Sbjct: 61 LAQAREKLLKAKADLAAGISPAK-KKQEIKNT--LAENSFSVWLDKY--TEECGVADSTK 115 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI-NEVMIYAQ 186 +++ + PA+G +S+ EI + V+A+ + + LC+ I V +A Sbjct: 116 KMRGYAIDNYLRPALGKMSLFEITENE-VRALAEDLVKQQAPSTALLCRMIIKNVYTFAS 174 Query: 187 NTGLIDAVPSVNIGKAFEKPQ-----KKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 G P + F +P K ++ P ++ +++ + +S +S++ F Sbjct: 175 MHG----GPKLKSPTDFVRPSSIHTFKSRTRAMSPREIGYVLNGIEQSSSDISSKSAFKL 230 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LLT+ R +E W EID+N W+IPA RMK R H V LS A IL ++ LS Sbjct: 231 ILLTLLRKSEVINGVWSEIDWNEKTWRIPAERMKTKRPHNVYLSKQAFDILVCLRTLSTC 290 Query: 302 R-EFIFPSRIKPNQPMNSQTVNAAL-------KRAGLG-GVLVSHGLRSIASTALNEEGF 352 + +FIFP++ N+PM + T N L K+AG+ H LR AST LNE F Sbjct: 291 KSDFIFPAKYGLNKPMATSTPNRLLELGMANAKKAGIEIEPCTIHDLRRTASTLLNEAEF 350 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLE 380 D IEA+LAHV VR YN +DY E Sbjct: 351 NSDWIEASLAHVASG-VRAVYNVADYRE 377 >UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QAC1_PSYCK Length = 448 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 112/409 (27%), Positives = 195/409 (47%), Gaps = 22/409 (5%) Query: 9 TDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 +D I + KP+D Y + + L L+++ + +K W +RYY P +++ S G YP++ Sbjct: 8 SDRSISSHKPEDKKYFVAVKNHPKLFLMVRPTETKSWMYRYYPPSNPKQSIISIGIYPSI 67 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT-NTFLLVAERWWNVKKTSVTED 125 S + A ++ E + LL+K IDP+ H +E ++ S +KT N+F A W T Sbjct: 68 SYARACEVWREYEDLLSKGIDPKIH-REDIKKSFISKTKNSFNHFA---WEYFDTLEQSQ 123 Query: 126 YADDIWRSLER--DIFPAIGDISITEIKAHTLVKAVQPVQARG------ALETVRRLCQR 177 + + R R I IG+ I+EI + +++ + +QA+ + R Sbjct: 124 KGNTLIRKKGRLELICSYIGNEPISEIGSPRMLEVLLDIQAKSLNKDDKPTDKAERCAGI 183 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTR 236 ++V +YA G + P+ I K + P++ +P L +L+ + T +T Sbjct: 184 ASDVFVYANARGFCSSNPAALIKSQLAKSSYGHRPAVTKPKDLAKLLRAIETIEGDPNTI 243 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIP----AARMKMNRDHTVPLSDGALAIL 292 L R + W ++D A W++ ++ M +D VPL A+AIL Sbjct: 244 NSLRLLALLFVRNGDLRRMCWIDLDLEAGRWRLKPLKGQGKVNMVKDMVVPLPRQAVAIL 303 Query: 293 EMMKPLSGGREFIFPSRI-KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE- 350 + ++G +++F S+ K +Q ++ T N LK G + +HG R+ A T L E+ Sbjct: 304 REQQKINGHTKYVFFSQTAKKHQIISDATANKRLKDLGYKDIHCAHGFRATAKTILQEQL 363 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 +P ++E AL H K+ AY R +Y++ R MMQ WAD + A G Sbjct: 364 KYPLVLVEMALGHTTKDPNGTAYGRFEYIDDRSDMMQKWADYLDALREG 412 >UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobiales RepID=A6U968_SINMW Length = 391 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 124/393 (31%), Positives = 189/393 (48%), Gaps = 25/393 (6%) Query: 8 LTDTEIKAA-KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA- 65 LT TEIK + KPK L DGDGL L SSG++ + F Y R ++ Sbjct: 6 LTVTEIKNSPKPK-----LRDGDGLWLHTSSSGNRHFVFIYIRHGRRREMGLGTYGTGTG 60 Query: 66 -VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 VSL+ AR E + +L + DP E+ ++ K TF A+ + ++ Sbjct: 61 QVSLAAARTKAEEIRTILGRGGDPFTEMGER---QEKVKPTTFGQCADDLVDAMESQWRN 117 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + WR + AI + + E+ +V+ ++P+ + A ET RL RI +V+ + Sbjct: 118 EKHRAQWRMTLTEYAKAIRKLPVAEVTTDDVVRVLKPIWSTKA-ETASRLRGRIEKVLDH 176 Query: 185 AQNTGLIDAVPSV-------NIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 A+ GL +I K ++ + ++ +P + +R AS + R Sbjct: 177 AKVRGLRTGENPARWKGHLDHILPKAGKLKRGHHAAMPYADVPAFIKKIREAS-GVGARA 235 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 L + +LT +R E A+W E DF + W +PA RMK R+H VPL+D LA+L MK Sbjct: 236 L-EFTILTASRTGETMGAKWAEFDFRENVWTVPAERMKGGREHRVPLTDRVLAVLTEMKK 294 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDV 356 S +F+FP K N P+++ T+ +K V HG RS +EE F +V Sbjct: 295 RSVN-DFVFPGS-KANTPISNMTMTKVMKTYEADAFTV-HGFRSAFRDWASEETEFQGEV 351 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWW 389 EAALAH+ +E RAY R D LE+RR +M+ W Sbjct: 352 AEAALAHITGDETERAYRRGDVLEKRRKLMEAW 384 >UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2Y2_9BACT Length = 406 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 121/417 (29%), Positives = 191/417 (45%), Gaps = 40/417 (9%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T I A K+ DY L+DGDGL L I + G K W R + + + K G YP +S Sbjct: 2 LTNTAIAKAAAKEKDYMLFDGDGLYLRISTKGKKKWLIRSF--VGGRERKVVIGEYPVMS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR+ R + K+ K + S KT TF V RW K+ +V+ D+ Sbjct: 60 LQEARRERDDRKM------------KARTGVSIRNKTVTFGDVFARWLKKKEKAVSPDHY 107 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I R +E + P + + + +I L++ +Q RG ++T RR ++ A + Sbjct: 108 KIIKRRIEMYLLPYLANRPVADISRPELLEVLQHPIERGLIDTARRTGALARSILDAAAD 167 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G + + ++ ++ + + +N S P ++ +L+ + + L M T Sbjct: 168 KGEVALNIAADLSRSLPEWEVRNFKSAFDPREVRRLLLAIDCYPRQIVRYALRMVSY-TF 226 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS----GGR 302 R +E A W EI + EW IP K R VPLS AL IL+ M+ ++ G+ Sbjct: 227 VRRSELRRATWAEI--HEDEWHIPVVHAKKKRIQIVPLSRQALEILDAMRRIAQIRWKGQ 284 Query: 303 EF----IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS------------HGLRSIASTA 346 F IFPS N P S + + L ++ HG R +AST Sbjct: 285 PFEDKPIFPS--TRNTPSGSPYMGISAMEVALKWLVAHVPAPDTPPLIDLHGFRHMASTL 342 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 L+E + + IE L+H+ +++ Y++S L RR MMQWWAD + A G + L Sbjct: 343 LHEHHWDHEAIERQLSHLKRDKTEATYDKSKLLPLRRRMMQWWADYLDAVKEGRVDL 399 >UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RKK3_ACIRA Length = 426 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 125/434 (28%), Positives = 199/434 (45%), Gaps = 51/434 (11%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDG-DGLTLLIKSSGSKLWQFRYY--------RPL 51 M +K+K L+ + AK K+ G DGL L ++ + S++W R L Sbjct: 1 MPKKSKELS--ALSVAKIKNTGRHSVGGVDGLCLNVEGN-SRVWILRAVVGKRLDKDGKL 57 Query: 52 TKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRN--SQEAKTNTFLL 109 R G YP VSL++AR E ++ + IDP H++EQ+ Q+ + TF+ Sbjct: 58 KPHRRDIGIGPYPEVSLAEARAKATELRLQIRSGIDPIAHKQEQLEKLYVQKLRDKTFME 117 Query: 110 VAERWWNVKKTSVTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGAL 168 A+ K + + W S LE I+P +GDISI I + + ++P+ + Sbjct: 118 CAKVVIANKTRELKNEKHIGQWTSTLETYIYPTLGDISIGTITKVDIAEVLRPIWIKKN- 176 Query: 169 ETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFE------KPQKKNMPSIRPDQLPQL 222 ET +R+ RI + YA+ G + E K + + PS+ +Q+ Sbjct: 177 ETAKRIRGRIETIFDYAKAMGYFEGDNPAEWKGNLEPIFGNIKQESRPHPSLPYEQVAGF 236 Query: 223 MHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTV 282 + +R +S + L + +LT R E A+W EIDF W IP RMK N++H V Sbjct: 237 IQHLRQKK-GISPKAL-EFAILTACRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRV 294 Query: 283 PLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVN-------------AALKRAG 329 PLS A+ +L+ ++ + ++FIFP+ P N ++ LK G Sbjct: 295 PLSQEAVNLLKSIQEYTQPQDFIFPA------PRNGAMLSDMSLTILIKRMHEQKLKENG 348 Query: 330 LG-------GVLVSHGLRS-IASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQ 381 LG V+ +HG RS + ++ +P +V E LAH +EV AY R YLE+ Sbjct: 349 LGYIDPKQNRVITTHGFRSTFRDWSADKTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEK 408 Query: 382 RRPMMQWWADLVKA 395 R+ +M WA+ A Sbjct: 409 RKGLMADWAEFCSA 422 >UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepID=Q21D10_RHOPB Length = 429 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 184/409 (44%), Gaps = 39/409 (9%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDI 86 DG GL L I GSK W FRY L + G+ V L +AR+ ++ + Sbjct: 24 DGGGLYLQIAEGGSKSWLFRY--KLHGRTHWHGLGSLRDVGLEEAREKATGARKVRRNGG 81 Query: 87 DP--QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIW-----------RS 133 DP + Q E + AK TF A+R+ + D W + Sbjct: 82 DPIQAKRQAEAAARIEAAKAITFGEAAKRFIKANRAGWKNAKHADQWVMTLLGVDQKGKP 141 Query: 134 LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDA 193 + D I D+ I I +++ ++P+ A ET R+ RI +V+ A+ G + Sbjct: 142 SKNDYCKTIRDLPIGAIDTTLVLRIIEPIWA-SKTETATRIRSRIEQVIDAAKAKGEFNG 200 Query: 194 VPSV-------NIGKAFEKPQK-KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 N+ A K +K +N P++ QLP M +R + + F Q+LT Sbjct: 201 ENPARWKGHLDNLLPATSKVRKVRNHPALPYRQLPDFMRKLRERDGAAAAALEF--QILT 258 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP A A+WD+ID S W IPAA MK + +H VPLS ALA+L+ M+ E+I Sbjct: 259 AVRPGNAVAAKWDQIDRQTSVWTIPAALMKSDAEHRVPLSKAALAVLDRMEATKDDSEYI 318 Query: 306 FPSRIKPNQPMNSQTVNAALKRAG----------LGGVLVSHGLRSIASTALNEEGFPPD 355 FP+ +P++ ++ A + R L +V HG RS E G+ Sbjct: 319 FPN--TKGKPLSDASMAAVIDRMNELERRWIDPKLDREIVPHGFRSSFRDWAAEHGYDDP 376 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV-KAADSGSIVL 403 V EAALAH +EV AY R+ +L+ R MM+ WAD + + SG V+ Sbjct: 377 VAEAALAHKVSDEVVAAYRRTTFLDLRNRMMEDWADYCARPSSSGDTVV 425 >UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCI3_9SPHN Length = 325 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 11/327 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+ IKAAK +D Y+L D DGL L + +G++ W+ Y R L KQ+T +FG +PAV Sbjct: 3 LSAVAIKAAKSRDKPYKLADRDGLYLEVSPTGARSWRMNY-RYLGKQKT-LTFGRWPAVG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW----NVKKTSVT 123 L+DARK ++ +LA+ DP E K + + A ++F VAE + ++SVT Sbjct: 61 LADARKKCDAAREVLARGDDPGEQAKLERIAASVASASSFEAVAEEYLAKIEKEGRSSVT 120 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 R L I +IG I+ I A L+ ++ ++ +G ET RRL +++ Sbjct: 121 MKKK----RWLIGFIDKSIGKRPISAISAPELLLTLRKMEKKGKYETARRLRSTCSQIFR 176 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQ 242 YA TG + +V++ A P+ + P+I ++ L+ ++ + +T+ Sbjct: 177 YAIATGRAERDVTVDLRGALIVPKAVHRPAITDASKVGGLLRSIESFDGHPTTQIALKLV 236 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 RP E A W E D +A+ W IPA + KM R H +PLS L I+ ++ + Sbjct: 237 PHVFVRPGELRHAEWTEFDLDANVWTIPAEKTKMRRPHAIPLSRQTLEIIASIEHDADYS 296 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAG 329 F+FPS +PM+ T+NAAL+R G Sbjct: 297 RFLFPSLRSVQRPMSENTINAALRRMG 323 >UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU Length = 419 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 118/389 (30%), Positives = 190/389 (48%), Gaps = 22/389 (5%) Query: 19 KDAD----YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKL 74 KD D YQ DG GL L + ++ K W FRY L KQR + G +PA+SL DAR Sbjct: 10 KDVDQPGSYQ--DGRGLILRVSATLRKSWVFRYM--LAKQRHDLALGTFPALSLRDARLE 65 Query: 75 RAESKVLLAKDIDPQEHQKEQVRNSQEAKT---NTFLLVAERWWNVKKTSVTEDYADDIW 131 + ++ +A+ +DP ++ +V+ ++ ++T +TF AER+ +S ++ + Sbjct: 66 ADKYRLDIARGVDPAA-ERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSKKHHQQWQ 124 Query: 132 RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLI 191 SL + ++PAIG I E+ ++ + P+ ++ + T R+ RI V+ A+ L Sbjct: 125 NSLTKHVYPAIGGFRIAEVDTDDILDVLTPIWSKIPV-TANRVRNRIELVLDAAKALKLR 183 Query: 192 DAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM----RTASISMSTRCLFMWQLLTIT 247 +K K ++ P P + T R S+ S + +LT T Sbjct: 184 QGENPARWRGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGSAARAVEFAILTAT 243 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E + A+W EID+ W IPA RMK + H VPL++ L +L + + ++IF Sbjct: 244 RNQEVSGAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLR--QQVGKHDKWIFL 301 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST-ALNEEGFPPDVIEAALAHVDK 366 + + P+ + L + + GV V HG RS T A E +V E ALAH Sbjct: 302 NSWRTG-PIPGNAMARVLDQLQVDGV-VPHGFRSTFRTWAAEETDHQREVCEMALAHTLN 359 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 ++V AYNR D L++RR +M+ W D + A Sbjct: 360 SKVEAAYNRGDLLDKRRALMKDWGDFLVA 388 >UniRef50_B9R123 Site-specific recombinase, phage integrase family protein n=3 Tax=Alphaproteobacteria RepID=B9R123_9RHOB Length = 451 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 126/429 (29%), Positives = 190/429 (44%), Gaps = 37/429 (8%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDG-DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 AR+ PL +K + + G GL + + SSG K W R + +R Sbjct: 26 ARELTPLEVKRLKNSGRGGNELHFVGGVSGLAIQLLSSGGKTWILRTT--VGYKRRDIGL 83 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKE---QVRNSQEAKTNTFLLVAERWWNV 117 G YP VSL+ AR+ E+K L+ + +DP EH+K Q+ SQ + +F +R+ +V Sbjct: 84 GGYPDVSLAQARERARETKELIRQGVDPIEHRKSLQSQLVASQ-MRGLSFSDAVDRYLSV 142 Query: 118 KKTSVTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 K + + + W S L+ P +G + + I ++ +QP+ ET RL Sbjct: 143 KSAELRNEKHKEQWASTLQTYALPHLGKMLVDNITTQDILLVLQPIWT-DKTETASRLRG 201 Query: 177 RINEVM----IYAQNTGLIDAVPSVNIGKAFEKPQK----KNMPSIRPDQLPQLMHTMRT 228 RI V+ + TG A + N+ + P K N P+I + +R Sbjct: 202 RIEAVLSWSTVSGHRTGENPARWAGNLKELLPSPSKIAKSGNWPAIALVEADSWFEGLRL 261 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 + + F+ L +R E +A W EID W IP RMK+ +DH VPLS Sbjct: 262 RDGTAARALEFL--ALCASRSGEVRKATWSEIDHKQKTWVIPGERMKVGKDHRVPLSA-T 318 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL---------------GGV 333 L P FIFP+ P++ ++A ++R G Sbjct: 319 ALALLDALPKREDSPFIFPA--PRGGPLSDMALSAVMRRMHSVELDNGRPGWRDPRNGHP 376 Query: 334 LVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 V HGLRS E GF D+ E AL+H +EV RAY RSD +E+RR MM WA+ + Sbjct: 377 AVPHGLRSTFRDWAAESGFARDMAEIALSHSVGSEVERAYRRSDLIERRRGMMSAWAEFL 436 Query: 394 KAADSGSIV 402 + A + +IV Sbjct: 437 RGATASNIV 445 >UniRef50_A7I3A4 Putative prophage integrase n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I3A4_CAMHC Length = 403 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 124/419 (29%), Positives = 208/419 (49%), Gaps = 49/419 (11%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M+R+ LTDT+IK AKP+D+ LYDGD L L I + SK W FR+ + T + T+++ Sbjct: 1 MSRQIVRLTDTKIKNAKPEDS--PLYDGDNLMLKI-TKASKRWYFRFKQAGTDKYTEKAL 57 Query: 61 ---GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK----EQVRNSQEAKTNTFLL--VA 111 YP VSL+ AR++ A+ K +A++ DP + + ++V + + K N LL V Sbjct: 58 CKPNDYPTVSLAKAREITAKYKKAIAENKDPFKKAEIITIKRVFDEWKQKFNNSLLQKVK 117 Query: 112 ERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV 171 ER K V ++ + I D + I DI+ E+ L + Q AR Sbjct: 118 ER----KVAEVKNNFINKI------DEYTPINDITKREL-VDILEQRAQTAPARA----- 161 Query: 172 RRLCQRINEVMIYAQNTGLIDA--VPSVNIGKAFEKPQKKNMPSIRPD----QLPQLMHT 225 +R +NE+ YA+ G I+ + ++++ E+ + +N +I + +L +++++ Sbjct: 162 KRFQGYLNEIFSYAETKGYIENNFIKNISLNSLMEQHKTENYKAITDEADFKKLVKVIYS 221 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR--DHTVP 283 + + I+ + + L L R A +W EIDF E KIP MK+ D +P Sbjct: 222 LDNSPINTALKILLHLPL----RSANLISMQWREIDFMQKELKIPRPNMKVKSGDDFILP 277 Query: 284 LSDGALAILEMMKPLSGG-REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVL--VSHGLR 340 LSD + ILE + +++F SR+ + + +Q +N LK G L +H R Sbjct: 278 LSDEVIKILETHAEIYKDISDYVFMSRVIKCKHITAQGLNNRLKLLGFTEKLKQTAHSFR 337 Query: 341 S----IASTALNEEGF--PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 S IA ++E P D IE+ L H N V YNR+DY +++ + +WW++ + Sbjct: 338 STFRTIAQNHIDEIPIKNPRDAIESFLDHKIGNSVEMIYNRADYKKEKIAVAKWWSEFI 396 >UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP99_HAHCH Length = 416 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 127/420 (30%), Positives = 201/420 (47%), Gaps = 33/420 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKL---WQFRYYRPLTKQRTKQSFGAYP 64 L+DT+I+ AK + D L DG+GL+L I K+ W FRY RP TK+ K S G YP Sbjct: 4 LSDTKIRNAK-TETDTCLSDGNGLSLRIYPKRGKIARTWVFRYRRPATKKPAKLSLGDYP 62 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS--V 122 +SL AR+ + L + +DPQ QKEQ + A T L E W ++K++ V Sbjct: 63 VISLRAARQQAEIMRQQLFEGLDPQYVQKEQRAENANAITTQQLF--ESWLTLQKSAKEV 120 Query: 123 TEDYADDI---WR-SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 T+ D WR LE+ + P + I A L V A+G E R+ + Sbjct: 121 TDRTLADHEARWRVHLEKSLGPLLAKHVIRRQIAAVLDSMV----AKGIKEETRKCLCLL 176 Query: 179 NEVMIYAQNTGLIDAVPSVNI-GKAFE----KPQKKNMPSIRPDQLPQLMHTMRTASISM 233 + +A+ LI P + K+F+ P+ + +P +L + +ASI+ Sbjct: 177 KMLFRFAEERHLIKENPIEGLSAKSFKITAGAPRDRALPL---SELRSFWRLLDSASITP 233 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 +T F +LT R E RW E+D W +P R K + HT+ L + A+ ++E Sbjct: 234 ATANAFKLLILTGARRGEVTMMRWSELDLTQGMWVLPPERTKNRKAHTLYLPNLAMRLIE 293 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAG--LGGV--LVSHGLRSIASTALNE 349 M+P+SG E++ S P++++ + L+R L V H LR A+TA E Sbjct: 294 SMRPISGHGEYVL-SLGNGITPLSTEGLTVTLRRLSTRLESVPHFTVHDLRRSAATAWGE 352 Query: 350 E-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK---AADSGSIVLTH 405 P VIE L H ++ + Y R+ Y+++++ + W ++V+ A D G++V H Sbjct: 353 HLKTSPHVIEKMLNHQPRDRLVATYQRAAYIDEQKMAWKAWGEMVENHVANDFGNVVPLH 412 >UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=Proteobacteria RepID=A2SG96_METPP Length = 466 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 122/433 (28%), Positives = 195/433 (45%), Gaps = 46/433 (10%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 + + LTD ++KA KP+D Y++ D DGL + SG+ RY + ++R + G Y Sbjct: 17 RARSLTDLQLKALKPRDKAYKVSDRDGLYAYVAPSGTV--SLRYDYRIGRRRETLTLGRY 74 Query: 64 PA------------------VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN 105 A +SL++AR L ++K L + + P + EQ + E+ Sbjct: 75 DATAPARVPRSLDVLEYGMGLSLAEARLLLTKAKRALEQGVSPSRAKAEQ--KAAESDAL 132 Query: 106 TFLLVAERWWNVKK--TSVTEDYADDIW----RSLERDIFPAIGDISITEIKAHTLVKAV 159 TF AER++ K S E AD + +R + +G + + EI + L Sbjct: 133 TFGKWAERYFEFKGDPKSKGEQLADSTLAMRRSTYKRALEKPLGKLMLEEITPNRLAALC 192 Query: 160 QPVQA-RGALETVRRLCQRINEVMIY--AQNTGLIDAVPSVNI-GKAFEKPQKKNMPSIR 215 ++A RG V R +M+Y Q G+ P+ + A + + ++ ++ Sbjct: 193 DDIKAQRGPAVAVH---AREIVLMVYRHVQRKGIEVPNPAERVQASAIARFEPRDR-ALS 248 Query: 216 PDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK 275 P +L + + + + R + LLT R E A WDEI F+ W IP+ RMK Sbjct: 249 PSELRLFLAALDQCATMPTLRLAVRFVLLTGVRKGEFIGATWDEIVFDTETWTIPSRRMK 308 Query: 276 MNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV-- 333 R H V LSD A+ IL ++ ++ P R + P++ T+N + A + G+ Sbjct: 309 GGRAHVVYLSDQAMDILTTLRSCFSASRYLHPGRYDSDLPISDATLNRVIAMA-IRGIQA 367 Query: 334 -------LVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMM 386 H LR ST+LN F IE ALAHV +N + YN + Y +RR MM Sbjct: 368 TAPEFQPFTVHDLRRTFSTSLNRAKFDERWIEMALAHVPRNRIAATYNVARYAAERRIMM 427 Query: 387 QWWADLVKAADSG 399 Q WAD++ + G Sbjct: 428 QAWADMLDLWEKG 440 >UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SVD2_ACILW Length = 388 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 116/406 (28%), Positives = 182/406 (44%), Gaps = 43/406 (10%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 +K L DT + A + + DY+L+D L +K++GSK WQFRY + K K GA Sbjct: 7 KKKGYLADTVLTALEVEMQDYRLWDSPNLYFFVKANGSKSWQFRYKKRNGKWGWK-GVGA 65 Query: 63 YPAVSLSDARKLRA------ESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 YP + +AR + + E+ L D E + + ++ K W+ Sbjct: 66 YPIIKAKEARVIASGYLKEIEAGTFLEVDKYKLSSLIESLLDKKQKK-----------WS 114 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQ--------PVQARGAL 168 K S + S+++ I+P G+ + IK + PVQ R L Sbjct: 115 PKNFSKMQ-------LSIKKHIYPEFGNRDLRTIKTMEWYEFFARLEYDLKIPVQMRKLL 167 Query: 169 ETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRT 228 R Y +N P + FE+ + N + +LP L+ +R+ Sbjct: 168 SFAREAYDWACIYCEYKEN-------PVREVQGFFERHKSGNFKFVDLIELPDLLSAIRS 220 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 S S ST LL RP E +A+W++ DF+ W PA MK ++H VPL D A Sbjct: 221 YS-SRSTAIGLELLLLLFPRPGELQQAKWEQFDFHRKIWIKPAEMMKNKKEHRVPLPDQA 279 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 + +L+ +K + ++FP R P M+ T N AL G HG R +AST LN Sbjct: 280 IILLKRLKEIQTPSPYLFPLRNDPMMAMSVDTFNEALISLGYENKQHPHGFRHLASTTLN 339 Query: 349 EE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 + +IE+AL+HV K + Y+++++ ++R +MQ WAD V Sbjct: 340 NKFSDKYQIIESALSHV-KQGTKGIYDKAEHFQERVDLMQGWADYV 384 >UniRef50_A4BQA0 Prophage CP4-like integrase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQA0_9GAMM Length = 291 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 141/278 (50%), Gaps = 7/278 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT EIK AK D ++LYD DGL L + +G KLW+ +Y + + S G P V Sbjct: 2 LTVQEIKNAKASDKPWKLYDRDGLYLFVTPTGGKLWRGKYR--VNGREKTLSLGPCPKVG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR+ K A+ +D K+ + + ++ T TFL VA+ W + T +A Sbjct: 60 LAEARE-----KWQDARRLDDPSAVKQVEKQASDSTTPTFLAVAKEWRTRQTPGWTRKHA 114 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 +WRSLE DI P +G I EI+ ++ ++ ++ RGA E R+ QR+ V A Sbjct: 115 SQVWRSLEIDILPTLGPRPIDEIQPREIMALIEGIEDRGAGEIATRVLQRVRAVFSRAVA 174 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 G +A P+ + + +K ++ ++LP +H + T +TR +LT+ Sbjct: 175 LGYREANPAGELHNHLKPRKKGQQTALATEELPTFLHALETYQGDAATRLGLRLLILTLA 234 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 R +E EA+W E+D W +P RMK R+ VPLS Sbjct: 235 RTSEVREAKWAELDREEGVWTVPGERMKNRREQRVPLS 272 >UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae RepID=A9HQA6_9RHOB Length = 398 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 191/397 (48%), Gaps = 40/397 (10%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQ------RTKQSFGAYPAVSLSDARKLRAESKV 80 DG+GL L++ SG++ W R K RT G V+++ AR+ E + Sbjct: 22 DGNGLYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLGGADIVTINQARERALEYRR 81 Query: 81 LLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK----TSVTEDYADDIWRSLER 136 + ++P+ + K ++ +E + W N K + DYA Sbjct: 82 MAKTGLNPRFNAKREIPTFEEFAKQVHIDRLPTWKNAKHGQQWINTLRDYA--------- 132 Query: 137 DIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAV-P 195 FP IG + I + ++ + P+ ET +RL QRI V+ A++ G D P Sbjct: 133 --FPKIGRMPIDSVNQPEVMMCLAPIWT-AKHETAKRLAQRIKTVLDVARSKGFRDGENP 189 Query: 196 SVNIGKAFEKPQKK----NMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAE 251 I +A P+ K + ++ +P +R + +MS + L M+ LT +R E Sbjct: 190 VTAIKEAHALPKVKGKVNHHKAMHWRDVPAFYSDLRGRN-AMSAKAL-MFTCLTGSRTGE 247 Query: 252 AAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIK 311 +W EID +A W PA RMK DH VPL+D L+I+E ++ + +++F + K Sbjct: 248 VLGTQWGEIDLDARVWTCPAIRMKTGEDHRVPLTDEMLSIIEPLRAMQS--DYVFEGQ-K 304 Query: 312 PNQPMNSQTVNAALKRAGLGGVLVSHGLRSI----ASTALNEEGFPPDVIEAALAHVDKN 367 ++P+++ ++ L+R + GV V HG RS AS N P +V E +L+H+ + Sbjct: 305 RHRPLSNMSMLMLLRRMQVEGVTV-HGFRSTFRDWASDVANA---PREVSEMSLSHLVGS 360 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 +V RAY RSD L++RR +M+ W++ V + + I ++ Sbjct: 361 DVERAYARSDLLDRRRALMERWSNYVIGSQTNIIKMS 397 >UniRef50_B0UW27 Prophage CP4-57-like integrase n=1 Tax=Haemophilus somnus 2336 RepID=B0UW27_HAES2 Length = 317 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 145/286 (50%), Gaps = 2/286 (0%) Query: 24 QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLA 83 Q+ G L L++ G+K +++ + P+TK K++ G +SL A L LL Sbjct: 20 QISLGYKLFLVMSPKGTKSYRYIFRHPVTKAIKKKNLGNADVMSLESALSLAISFNSLLE 79 Query: 84 KDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIG 143 + +DP E+ K Q + + T +V E W K +++ + D +R + P G Sbjct: 80 QGVDPVENFKAQFKPVERV-VFTLSMVVEDWHVTKGMRLSKKHLRDRLARFKRYLLPHFG 138 Query: 144 DISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF 203 + + +I + ++ + R A ++ + + E+ +A + G+ A I ++F Sbjct: 139 EREVLDISLFEAREVIKAIFER-APHMGEKVARDLRELGDHAVDMGVWSANLLAPIKRSF 197 Query: 204 EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFN 263 +P+ N P IR D+LP+ + + + + TR L +QLLT+ R E ARW ++DF Sbjct: 198 PRPKAVNNPCIRADELPEFLCVLARSRLDFQTRLLIEFQLLTMVRANEVVTARWVDVDFV 257 Query: 264 ASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSR 309 + W+IPA MKMN+ H VPLS A+A+L ++ + + FIFP R Sbjct: 258 NAVWRIPAENMKMNKAHDVPLSSQAVALLFELRKFNADKPFIFPHR 303 >UniRef50_B1FYI2 Integrase family protein n=3 Tax=Burkholderia RepID=B1FYI2_9BURK Length = 311 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 154/294 (52%), Gaps = 13/294 (4%) Query: 107 FLLVAERWWNVKKTSVTEDYADDIWRS----LERDIFPAIGDISITEIKAHTLVKAVQPV 162 F LVAERW + K+ +++AD+ +R + + A+ + I+ + A + VK V Sbjct: 8 FHLVAERWLDFKR----KEWADETYRKADFVVREYLTSALRNKPISTL-ATSEVKPVLGA 62 Query: 163 QARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQ 221 A A + Q + ++ YA GL + ++ + + +K ++P+I +P + Sbjct: 63 IASHAPNLATKARQYVGGIVTYAVQNGLREDGAALTLRGVVPRHRKGHIPAITKPADIAP 122 Query: 222 LMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHT 281 L+H + A S TR +LT RP A WDE++ +EW + A RMKM DH Sbjct: 123 LVHAI-DAYRSPITRAALKLTMLTGLRPGVVAAVPWDEVNLKTAEWHVAAERMKMRHDHI 181 Query: 282 VPLSDGALAILEMMKPLSGGREFIFPSRIKPNQP-MNSQTVNAALKRAGLGGVLVSHGLR 340 VPL A+AIL+ ++ L+G ++FPS + P ++ ++ AL+ G G +HG R Sbjct: 182 VPLPKQAVAILKEVQSLTGKGHYVFPSPARQKTPHLHRDALSKALRDMGFQGKHATHGFR 241 Query: 341 SIASTALNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 + T E G DV+EA LAH + +V++AY+R+ + + RR +M+ WAD + Sbjct: 242 GMLRTVGRERLGMDIDVLEAQLAHAKRGDVQKAYDRTTFDDDRRRVMREWADYI 295 >UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacteraceae RepID=Q3J2T0_RHOS4 Length = 439 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 126/444 (28%), Positives = 196/444 (44%), Gaps = 52/444 (11%) Query: 1 MARKTKPLTDTEIK-AAKPKDAD---YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 M +K + ++K AA P D + + GL L I +G+K W R + R Sbjct: 1 MPKKAREWGALDVKRAAHPGDGANVWHAVGGVAGLLLQITPTGAKSWLLRTT--VAGTRR 58 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERW 114 G+YP V L++AR+ E+K +A +DP E +K A+ TF A++W Sbjct: 59 AMGLGSYPEVGLAEARERAREAKRKIAAGVDPIEERKATRAALAAAQRRSLTFADAADKW 118 Query: 115 WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPV---------QAR 165 K + E + +L FP IG +++ E+ +V+A+ + + R Sbjct: 119 IKAKLSDRPEKSQKAVRATLTAYSFPEIGALTVQELTPQDVVRALNTIWTAKPDTATKMR 178 Query: 166 GALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKP------QKKNMPSIRPDQL 219 G LE + ++ + TG A + N+ + P + N P++ +L Sbjct: 179 GYLEAI------LSWATVSGYRTGDNPARWAGNLKELLPAPSVVAKGRAGNFPAVPVARL 232 Query: 220 PQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD 279 + +T F LT R E A W E+D +A+ W +P ARMKM R+ Sbjct: 233 ADWWEELGQREGMGATALRF--AALTAARSGEVRGALWSEVDLDAALWVVPGARMKMGRE 290 Query: 280 HTVPLSDGALAILEMMKPLSGGREFIFPS----------------RIKPNQPMNSQTVNA 323 H VPLS A+A+L + L+G + IFP R++ + ++ Sbjct: 291 HRVPLSGPAVALLRGLPRLAGTGDLIFPGPRGGILSDMSVSAVMRRMQEDAETEAKMAGR 350 Query: 324 ALKRAG-----LGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDY 378 + AG G V HGLRS E G+ D+ E ALAH+ +EV RAY RSD Sbjct: 351 PVSAAGWRDTRTGRPAVPHGLRSSFRDWAAEVGYDRDMAEIALAHLVGSEVERAYRRSDM 410 Query: 379 LEQRRPMMQWWADLVKAADSGSIV 402 LE+RR MM+ WAD++ S+V Sbjct: 411 LERRRAMMERWADVLAGRSGASVV 434 >UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobacterales RepID=C5F036_9HELI Length = 397 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 16/342 (4%) Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK- 118 G YPA+SL DAR L+A L +D E K + R + K + E W + Sbjct: 58 LGKYPAISLMDAR-LKANE---LNLRLDKNEVLKIETRREKRNKERILREIFEEWKQIAI 113 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 K + +D+A R LE I G+ + ++ ++K+ + ET++R + Sbjct: 114 KGKINQDFA----RPLELHIINQYGNKPVADLTKQDVLKSFDKLYLEDKRETIKRTYIHL 169 Query: 179 NEVMIYAQNTGLIDA--VPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMST 235 ++ YA N + A + +++I + K +I D L+ + + + ++ Sbjct: 170 KNLIKYALNRDYLQATNLLTLDIDTLYGKLTPTPFRAITDLDTFRDLLLAIDSYNGNLFV 229 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 + R + +W+ +D KIPA MK + VPLSD L + + Sbjct: 230 KVALQVSPYLFLRSSTMRNLKWEYLDEKEKILKIPANIMKAKEEFLVPLSDSVLDKILAI 289 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTAL--NEEGFP 353 K L+ +IFPS I + + T+N A+KR G G ++V HG RS AST L N++ Sbjct: 290 KELTYPSPYIFPSDISKGKALAENTLNYAIKRLGFGELMVYHGFRSTASTFLYENKKNHK 349 Query: 354 PD--VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 D VIE L H ++N+V+ YNRS LE RR +MQWW+D + Sbjct: 350 QDSEVIELCLDHRERNKVKAVYNRSLRLEDRRELMQWWSDYI 391 >UniRef50_Q9RM38 Integrase (Fragment) n=56 Tax=Enterobacteriaceae RepID=Q9RM38_ECOLX Length = 304 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 133/255 (52%), Gaps = 17/255 (6%) Query: 159 VQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ 218 V P LE R Q ++ +M +A + LID P+ N+G P +++ P++ ++ Sbjct: 33 VAPATGISKLEVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLER 92 Query: 219 LPQLMHTMRTASISMS-TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR---- 273 LP+L+ + TR + L R +E ARW EIDF W IPA R Sbjct: 93 LPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPII 152 Query: 274 --------MKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAAL 325 KM H VPLS+ ++AIL+ +K ++G E IFP P +PM TVN AL Sbjct: 153 GVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKAL 212 Query: 326 KRAGLGGV--LVSHGLRSIASTALNEEGF-PPDVIEAALAHVDKNEVRRAY-NRSDYLEQ 381 + G + HG R++A +AL E G D +E ++H ++N VR AY +++++LE Sbjct: 213 RVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEA 272 Query: 382 RRPMMQWWADLVKAA 396 R+ MMQWW+D ++A Sbjct: 273 RKAMMQWWSDYLEAC 287 >UniRef50_A1SXI0 Phage integrase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SXI0_PSYIN Length = 216 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 109/193 (56%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 +KT PLT+ EI+ A PK+ +Y L DG+GL L ++ G+K W++ Y P TK+R G Sbjct: 13 KKTAPLTEQEIEGATPKEKEYNLGDGNGLYLYVRPKGTKSWKYNYTHPYTKKRANLGLGV 72 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YP V+L AR +R E LLA +IDP++H+ +++ E F V W VK + + Sbjct: 73 YPNVTLEQARMVRDEFNSLLANNIDPKKHRDAKIKEETEVNQYLFDNVVNDWLKVKASEL 132 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 I SL+ I P + + S+ +I A +++ +QP++ G ++ + + ++M Sbjct: 133 KPLGLKRITNSLDNFILPFVANCSVKDINAKLVMEVLQPIKKNGDIQVLMQNHLYFYQIM 192 Query: 183 IYAQNTGLIDAVP 195 YA+++GLID P Sbjct: 193 DYAKSSGLIDHNP 205 >UniRef50_C6V8W5 Integrase n=4 Tax=Enterobacteriaceae RepID=C6V8W5_ECOBD Length = 294 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 145/276 (52%), Gaps = 21/276 (7%) Query: 31 LTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQE 90 + +L+ + S+ W+ RY R L K++T + G YP VSLS+AR R E++ L++ IDP E Sbjct: 1 MLMLVHPNSSRYWRLRY-RILGKEKT-LALGVYPEVSLSEARAKRDEARKLISAGIDPCE 58 Query: 91 HQ--KEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISIT 148 + K+ V + Q +F +A RW + T+ ++D + +SLE +FP IG+ IT Sbjct: 59 QKRAKKVVPDLQL----SFEHIARRW-HASNKQWTQSHSDKVLKSLETHVFPFIGNRDIT 113 Query: 149 EIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQK 208 ++ L+ V+ +A+ E RL QRI+ VM YA +G+I P++++ A ++ Sbjct: 114 KLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKR 173 Query: 209 KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWK 268 ++ P++ +LP+L+ + + TR M LL R +E ARW EID + W Sbjct: 174 QHRPALDLSRLPELLSRIGSYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIENAMWT 233 Query: 269 IPAAR------------MKMNRDHTVPLSDGALAIL 292 IPA R KM H VPLS A+ L Sbjct: 234 IPAEREPLPGVNFSHRGSKMRTPHLVPLSKQAVPSL 269 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/408 (28%), Positives = 184/408 (45%), Gaps = 25/408 (6%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K TDT I+ K K+ Y+ ++G G + I + K W +RY + TK + G YPA Sbjct: 2 KNFTDTYIRNLKAKEKRYEEFEGGGFGIRITPNNVKTWIYRY--KINGVTTKFTLGHYPA 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SLS+A++ E + + +DP K ++ +E NT +A W+ T+ E Sbjct: 60 MSLSNAKRRFLELSQMRREGVDP----KTVIQAQEEQDNNTVDKLALNWY----TNYIEK 111 Query: 126 YADD---IWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + I R ++ DI P +G + +++ + A+ + RGA R I ++ Sbjct: 112 HVKRPLVIKRQIDNDIIPLLGKKKLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMF 171 Query: 183 IYAQNTGLIDAVPSVNIGK----AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 YA + G P+ NI EKP+++ + ++ + L +S TR Sbjct: 172 NYAVSRGYTQFNPASNIRSRDIGGIEKPKERVL-TLEEIKALWLFLDSDLTQMSTQTRIA 230 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 LLT R E A W EIDF AS W IPA K + H V LS A ++ +KPL Sbjct: 231 IKLLLLTGVRTVELRLASWHEIDFEASLWTIPALHSKASIIHKVHLSKLAKSLFLQLKPL 290 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKR--AGLG-GVLVSHGLRSIASTALNEE-GFPP 354 S +++ + P+ + A+KR LG +H LR +T L E P Sbjct: 291 SHS-DYVLTG-VDGFHPITENALPRAIKRIQEKLGIPDWTAHDLRRTFATQLGETLQIDP 348 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 VIE L H + YNR++ L QRR ++ WA ++ ++V Sbjct: 349 VVIEKCLGH-KMPRIMATYNRNEMLPQRREALERWAVCIENMMQDNVV 395 >UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus taiwanensis RepID=B3R9I1_CUPTR Length = 412 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 160/378 (42%), Gaps = 16/378 (4%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDI 86 DG+GL L ++ SG+K + RY + R + G +P + ++ ARK +E + LL Sbjct: 23 DGEGLYLRLEPSGTKTFCLRY--TVAGSRKLKVLGTFPDMDIAAARKQASEMRELLEVHD 80 Query: 87 DPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDIS 146 KE ++ + L E W ++ D L+ DI P IG Sbjct: 81 SLPSASKEV--DALTSPITVAQLATE--WEMRYCRQRYKRPDKELHYLKSDIVPVIGQEL 136 Query: 147 ITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKP 206 + + + + + RGA R + + YA G IDA P K Sbjct: 137 VQNVTGRHVSLVIGKIVDRGARTKANRTLCVLKSLFGYAVEHGYIDATPVAMTKKGAGGA 196 Query: 207 QKKNMPSIRPDQLPQLMHTM--RTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNA 264 +K + P ++ L H + R ++ T+ L LLT RP E RW+++D Sbjct: 197 EKARSRVLNPKEIETLWHALDSRRRRMNWRTKALLKLILLTAQRPGECCGMRWEDVDLAN 256 Query: 265 SEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMN-----SQ 319 W +PA K +RDH V LS A++IL+M + +GG ++F S +K ++ Sbjct: 257 GIWFLPAELTKSDRDHVVHLSHMAVSILKMAEKETGGSVYVFNSVVKGRDVATTVDALTR 316 Query: 320 TVNAALKRAGLGGV--LVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSD 377 V L G + H LR AST + G P + E L H K V YN + Sbjct: 317 AVARMLANGEFGAMKRFTPHDLRRTASTGMANAGVYPHITEKILNHRMKG-VLAVYNHGE 375 Query: 378 YLEQRRPMMQWWADLVKA 395 YL +R+ M+ W L++ Sbjct: 376 YLPERKAAMELWGRLIEG 393 >UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDX8_ERYLH Length = 396 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 120/389 (30%), Positives = 186/389 (47%), Gaps = 17/389 (4%) Query: 11 TEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSD 70 T +KA K+A + DG+GL L++K+SG+K W R +R G V ++ Sbjct: 16 TAVKAKAIKEAG-RYSDGNGLQLVVKASGAKSWILRVQH--DGKRRDIGLGPLSEVGPAE 72 Query: 71 ARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDI 130 AR+ E++ ++ DP + R S + TF +A + + K+S + Sbjct: 73 AREKAVEARKVIRGGGDPSGLKSGSGRIS--GRPPTFRELATSYHDDHKSSWKNAKHREQ 130 Query: 131 WRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTG 189 W S L+ FP GD + + + ++ ++P+ ET RR+ QR+ V+ YA G Sbjct: 131 WLSTLDTYAFPIFGDQPVDRVDSRDVLDCLKPIW-NAKPETARRVLQRVLRVLNYAHGMG 189 Query: 190 LID-AVPSVNIGKAF--EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 + P+ +I A ++ Q ++ S+ ++P+LM + AS + F +LT Sbjct: 190 HREHEAPTQSIRAALGKQRSQVRHHASLPYAEMPELMAKLEAASGVGAMALRFA--ILTA 247 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE-FI 305 R E A+W+E+D W +PA RMK R H VPLS ALAILE K L E F+ Sbjct: 248 ARSGEVRGAQWNEMDLAKKTWTVPAERMKARRAHAVPLSPAALAILEDAKGLRKKPEGFV 307 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR-SIASTALNEEGFPPDVIEAALAHV 364 FPS ++ T+ A++ A V HG R S A + P EAALAH Sbjct: 308 FPS--SRGIALSDMTLLKAIRAASDQNTTV-HGCRTSFRVWAAEKTSCPAAAAEAALAHT 364 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 N+ AY+R+DYL+ RR +M W + Sbjct: 365 IHNKAEAAYHRTDYLDIRRQLMADWGAFL 393 >UniRef50_C1TKN0 Putative uncharacterized protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKN0_9BACT Length = 298 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 18/273 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+DT+I+ KP++ Y + D DGL + I +G K W+ R +P ++S GAYP + Sbjct: 2 LSDTQIRKLKPQETRYSMLDSDGLYIEILPTGKKYWRIRKRKPGGNGEIRRSIGAYPKIG 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT-SVTEDY 126 L +AR+ R E L P+ K+ V NTF +A W VK + Y Sbjct: 62 LKEARQKRDELVSTL-----PELGGKKNV--------NTFAELAHEWLEVKMYPTKAPRY 108 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + +++ + P IG + + A L+ ++ +++RG +ET RR Q +++ Y Sbjct: 109 IETLVYKIDKLLIPHIGHRQVDTLTAPELLDVLRKIESRGTIETARRTRQMCGQILRYGV 168 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG D S ++ A + + K+M + I P Q+ LM ++ + R ++Q T Sbjct: 169 ATGRCDRDISADLKGALQTVRHKHMATLIDPAQIGGLMRSIEEG-LKGQIRLTLLFQAYT 227 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNR 278 RP E +A W+EI+ A WKIPAA+MKM R Sbjct: 228 FARPGEIRKAEWEEIE--ADTWKIPAAKMKMKR 258 >UniRef50_C6ALV6 Prophage integrase n=1 Tax=Aggregatibacter aphrophilus NJ8700 RepID=C6ALV6_AGGAN Length = 173 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 101/165 (61%) Query: 147 ITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKP 206 I EI +++A++ + +G +T++R + +NEV+ +A N GLI P + I + F Sbjct: 3 INEILPKVVIEALESLYNQGKGDTLKRTIRLLNEVLNFAVNYGLIAFNPCLRINEVFNFG 62 Query: 207 QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASE 266 + N P+I P +LP+L+ + +S ++ T+ LF +QLLT+ RPAEA+ A W EIDF S Sbjct: 63 KSTNNPAITPKELPELIKAVMYSSAAIQTKLLFKFQLLTMVRPAEASNATWSEIDFKKSL 122 Query: 267 WKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIK 311 W IPA RMK +PLS A+AIL MK +S E++F S IK Sbjct: 123 WTIPANRMKKRHPFVIPLSSQAMAILNKMKSISVKNEYVFQSWIK 167 >UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria RepID=B0SXU9_CAUSK Length = 399 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 114/400 (28%), Positives = 182/400 (45%), Gaps = 25/400 (6%) Query: 11 TEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSD 70 T I+AAK K + DG GL L I G + W F Y R +RT+ G +SL++ Sbjct: 9 TAIQAAKLK-VPGRHSDGGGLYLSIDDGGRRRWVFIYTR--GAKRTELGLGGGRDLSLAN 65 Query: 71 ARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDI 130 AR A + +LA +DP+ V +++ + TF A+ + + S + Sbjct: 66 ARVEAAAFRTMLADGLDPK------VERARDDQAQTFGACADAYVEAMRPSWRNEKHAAQ 119 Query: 131 WRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGL 190 W+ I + + E+ ++ +QP+ R ET RL R+ V+ A+ GL Sbjct: 120 WKMTLTKYAAPIRERPVKELTTQDILDVLQPLWTR-TPETAERLRGRMENVLDAAKAKGL 178 Query: 191 IDAVPSV----NIGKAFEKPQK---KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 ++ + K Q+ + ++ D +P M +RT S +++ R L + + Sbjct: 179 RTGENPARWRGHLNQLLPKRQRLARGHHAALAYDLIPDFMANLRTRS-AVAARAL-EFAI 236 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT +R E A W+E D + W IPA RMK R+H VPLS A+ I E G+ Sbjct: 237 LTASRSGEVLGATWNEFDLDKKVWVIPATRMKAGREHRVPLSARAMEIAEAQ--FDDGKG 294 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR-SIASTALNEEGFPPDVIEAALA 362 ++F K +P++S + L+R + + HG R S A GF +V E ALA Sbjct: 295 YVFAG-PKLGKPLSSMAMAMLLRR--MKSDITVHGFRSSFRDWASETTGFSHEVCEMALA 351 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 H N+ AY R D ++RR +M+ WA + +V Sbjct: 352 HTIANKAEAAYRRGDLFDKRRKLMEAWAGYCATQKADQVV 391 >UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SXW8_POLSQ Length = 434 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 107/378 (28%), Positives = 174/378 (46%), Gaps = 27/378 (7%) Query: 43 WQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA 102 W FRY P +R + G+ A SL+DAR+ E + L+ IDP E + + A Sbjct: 46 WIFRYTSPTLFKRREMGLGSLEARSLADARRKTLELRQLVMDGIDPTEDRCKAKSKRITA 105 Query: 103 KTN--TFLLVAERWWNVKKTSVTEDYADDIWR-SLERDIFPAIGDISITEIKAHTLVKAV 159 N TF AER +K D WR ++ +P IG++ + +I + K + Sbjct: 106 INNGITFKEAAERCIEGRKAEWKSSKHADQWRNTISTFAYPEIGELRVDQINTSHIAKLL 165 Query: 160 -QPVQARGAL----------ETVRRLCQRINEVM--------IYAQNTGLIDAVPSVNIG 200 Q ++ + ET R+ QRI + I N + + Sbjct: 166 EQEIKNKNGTVEGTFWNVRTETATRVRQRIEVIFDWCKAHEYIKGDNPARLKGALGHLLP 225 Query: 201 KAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEI 260 KA + +K + P++ ++ + + +R + S L + +LT TR +E EA+W E Sbjct: 226 KAKKIQKKSHHPALPFQRIGEFVKDLREHN-GYSALALELL-ILTATRTSEVIEAKWTEF 283 Query: 261 DFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRI-KPNQPMNSQ 319 + W IPAARMK ++H VPL+ A+ ILE +K +S ++FP + K +++ Sbjct: 284 NLETKVWVIPAARMKAGKEHRVPLNTRAMEILEHLKTISVS-SYLFPGSLHKEESHLSNM 342 Query: 320 TVNAALKRAGLGGVLVSHGLRS-IASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDY 378 + + +++ V HG RS A +P + +E ALAH KN+ AY R D Sbjct: 343 ALLSMMRKMPKYSGYVPHGFRSTFRDWAAETTDYPNETVELALAHTIKNKAEAAYRRQDQ 402 Query: 379 LEQRRPMMQWWADLVKAA 396 LE+R +M+ W +V AA Sbjct: 403 LEKRTVLMEEWGAIVNAA 420 >UniRef50_C6RGV6 Phage integrase n=3 Tax=Campylobacter RepID=C6RGV6_9PROT Length = 407 Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 24/386 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L DT+I+ A K+ DY L DG GL +LI S G K W F Y P++ ++ FG YP ++ Sbjct: 20 LKDTQIRKAIKKEKDYSLTDGGGLAILITSKGVKGWVFYYIDPVSGKKCSAGFGLYPDIT 79 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+LRAE K L+++ I P+EH+K+ Q TF V W ++K V Sbjct: 80 LARARELRAEYKSLISQGISPKEHKKQAREQRQSDHKQTFSKVFNEWLELEKMRVLPKTL 139 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + I P IGD +I I + + ++ + + +T + L Q +N + YA Sbjct: 140 QTKANRINNHITPLIGDRAIKSINHGEIAQILEQI-GKDTPQTAQILHQLLNNIFHYATT 198 Query: 188 TG-----LIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 G +I + + I E + I + L ++ + +STR + + Sbjct: 199 KGYTPFNIISNIQAKAIIINKEAEHYGKLTEI--EDLRAFVNKIYDYPFFLSTRNILKFA 256 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHT-----VPLSDGALAILEMMKP 297 L R A +W+ +DF+ IP ++ N++ + +PLSD ++IL + Sbjct: 257 LHIPLRVAPLTLLKWEYVDFDKKLLTIP-RELQKNKNKSLGAFILPLSDEVISILREQER 315 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-----GGVLVSHGLRSIASTA----LN 348 ++F + N P++ T +K G ++ +H R I TA L Sbjct: 316 EFKAYPYVFMNTSYKN-PIHKDTPTKTIKEFEFYDRDTGRIITAHSFRGIFKTAVYNYLE 374 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYN 374 + + I AL H+ + V +Y+ Sbjct: 375 QHNTSTEAINKALDHLHGDRVELSYS 400 >UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3_FRATN Length = 413 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 118/436 (27%), Positives = 199/436 (45%), Gaps = 67/436 (15%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K LT +++++ K DY+L DG+GL + + +GSK WQFRY + G+YPA Sbjct: 3 KTLTASKLQSLKATGKDYRLNDGNGLYIKVSKAGSKSWQFRY------KGKWLGIGSYPA 56 Query: 66 VSLSDARKLRAESKVLLAKDIDPQ-EHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +SL AR + +LA DP+ E +K + +++ N F +V+ + + K S + Sbjct: 57 ISLKQARDEAFKYNQMLAGGKDPKLEKEKGKYQDN-----NLFSIVSAKAFETKDPS--K 109 Query: 125 DYADDIWRSLE----------RDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV--- 171 Y W+S E R I P++ +I +I +P Q G LET Sbjct: 110 PYG---WKSEEVYNRNLSIYNRFILPSLKTFNINDI---------EPYQLAGILETTTPS 157 Query: 172 --RRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF--EKPQKKNMPSIRPDQ----LPQLM 223 R++ +N + YA G++ NI + EK K I P + QL+ Sbjct: 158 NQRKIKNLLNMIFTYAVGKGIL----KYNIARDIQAEKEDPKGFEFINPVEDKYNFSQLL 213 Query: 224 HTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEI-DFNASEWKIP-----AARMKMN 277 + + +T+ +L RP +W++I + N KIP A MKM+ Sbjct: 214 NDIYNYKGQYNTKMALKLAVLVGFRPNNIVSMKWEDIQEANIDGKKIPFVFISADNMKMS 273 Query: 278 RDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA-GLGGV--- 333 RD PLS A +L +K +GG E++F S + + + ++++ AL+ G G Sbjct: 274 RDFRQPLSKQAYKLLMEIKEYNGGFEYVFHS-LSKKKHITIESLSKALRDTLGYNGTDKP 332 Query: 334 -LVSHGLRSIASTAL----NEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQW 388 +HG R T + ++ + D I L+H +N + Y+++D+L +R M+Q Sbjct: 333 KQHTHGFRKSVRTYISSIRSKYNWCSDSIRMILSHSKENAIDNIYDKNDFLLERSQMLQL 392 Query: 389 WADLVKAADSGSIVLT 404 WAD V + S ++ Sbjct: 393 WADYVDDVKANSNIIN 408 >UniRef50_D2QCK7 Integrase family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QCK7_9SPHI Length = 429 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 107/393 (27%), Positives = 177/393 (45%), Gaps = 26/393 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+ +I+ + + D L DG GL L + GSK W FRY PL+ QR KQS G YP S Sbjct: 9 LSSLQIERLQTVETDQMLNDGGGLYLFNRRHGSKEWIFRYSSPLSGQRRKQSLGTYPDTS 68 Query: 68 LSDARKLRAESKVLLAKDIDP----QEHQKEQVRN---SQEAKTNTFLLVAERWWNVKKT 120 L AR L + + ++++ +DP Q+H++ ++ N +E NT +V + W + Sbjct: 69 LKQARALASSKRDIISRGLDPIVEMQKHRQIEITNVNKREEYGRNTVKVVFQAWKRAELQ 128 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + +D D+I R+ E+D+FP IG+ I E+ + + ++ R RL + + Sbjct: 129 N-RKDKGDEIERAFEKDVFPVIGNKVIGEVTRNDIKFVLERPLKRHVNRMANRLLSDLKQ 187 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 YA++ L P+ + K ++K+ + +L+ + S + + Sbjct: 188 FFGYAEDEELTHQDPTRRLIKDRVGGKEKSRQRYLDQKELKLLAGLLPVSGLKAEYQHLI 247 Query: 241 WQLL-TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 W LL T R E ARW +D+ + IP+ K H V LSD AL L +K + Sbjct: 248 WLLLATGCRVNEILRARWSHVDWENRFFHIPSELSKNTLKHVVFLSDFALWHLARLKA-T 306 Query: 300 GGREFIFPSRI----------------KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIA 343 E+I P+R + + + +Q VN G V H LR A Sbjct: 307 QTTEWIVPNRSGTGPITRQVLTKQVTDRQQKTLGNQRVNNPQALILPNGRWVIHDLRRTA 366 Query: 344 STALNEEGFPPDVIEAALAHVDKNEVRRAYNRS 376 T + E G P +I+ L ++++ Y R+ Sbjct: 367 GTLMQEIGILPYIIKKCLNQKTEDKIIETYQRA 399 >UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GUV7_SPHAL Length = 403 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 119/402 (29%), Positives = 180/402 (44%), Gaps = 36/402 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT +KAA YQ DGDGL L + +G+ W R R +R G+ V+ Sbjct: 4 LTAVAVKAALANPGTYQ--DGDGLFLKVGKTGAASWLLRLQR--DGKRQDIGLGSAKLVT 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR AE L K + ++ R +EA TF A ++ + + D Sbjct: 60 LAEARAKAAE----LRKAVKVEKRDVLTERKDEEAAKVTFREAATQYHSENEAGWKSDVY 115 Query: 128 DDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 W SLE FP +GD++ I A ++ + P+ ET R++ RI V+ Y+ Sbjct: 116 GRQWLASLENYAFPKLGDMTTGGITAADIISVLTPIWQE-IPETARQVRNRICAVLDYSH 174 Query: 187 NTGLIDA-VPSVN--------IGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 G + PS N + + +KP +K MP + +P + +R +R Sbjct: 175 AKGWRSSEAPSGNSSLKAGRGLPRQIKKPANRKAMPYV---AVPPFLTALRRKP--SYSR 229 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 +LT R E A+WDE D + W IPA MK +R H VPLS+ ALA+L Sbjct: 230 LALDLLILTGVRSQEVRLAKWDEFDLDQRLWTIPAEHMKRSRAHIVPLSEAALAVLVKAD 289 Query: 297 PLS-GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPD 355 + G E +FP + M++ T+ ++ + HG RS + EGFP Sbjct: 290 AMRLEGAEVVFPGMT--GKAMSNMTLLKVMR--DMQEPFHVHGFRSSFTDWAANEGFPNA 345 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQ------RRPMMQWWAD 391 V+EAALAH + V+ AY R+ YL R +M+ W + Sbjct: 346 VVEAALAHKTPDAVQAAYRRTTYLGTPDNPGARVKLMEAWGN 387 >UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholderiales RepID=A1W6C2_ACISJ Length = 459 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 179/377 (47%), Gaps = 21/377 (5%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDI 86 DG+GL L I + K W FRY R + G V+L++AR+ ++++LL + Sbjct: 23 DGNGLYLQITKALVKSWIFRYARGTGEH--FMGIGPVHTVNLAEAREQARKARLLLRDGV 80 Query: 87 DPQEHQKEQVRNSQ--EAKTNTFLLVAERWWNVKKTSVTEDYADDIWR-SLERDIFPAIG 143 DP H+ E + ++ +A F + + K S + W +L P G Sbjct: 81 DPLMHRAEALAKAKAVQASNKIFRDCMDEYIKSHKESWRNEKHQKQWEATLVEYACPVFG 140 Query: 144 DISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSV----NI 199 + + I +++ ++P+ + ET R+ +RI V+ +A G + ++ Sbjct: 141 KMHVRLINTPLVLQVLEPIW-KTKTETASRVRERIERVLAWATTQGFREGENPARWRGHL 199 Query: 200 GKAFEKPQK----KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEA 255 + KP K ++ PS+ + + + ++ R L + +LT R E A Sbjct: 200 QELLPKPSKLKKVRHHPSLPYGHVGAFVRLL-AREKGIAARAL-QFTILTACRTGEVIFA 257 Query: 256 RWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQP 315 +W+EID +A W IP RMK +++H VPL A+ +LE ++ L ++FP K N+P Sbjct: 258 KWNEIDLDAKVWIIPKERMKAHKEHRVPLVRDAVTLLERLRGLDP--VWVFPG-AKQNRP 314 Query: 316 MNSQTVNAALKRAGLGGVLVSHGLRSIAST-ALNEEGFPPDVIEAALAHVDKNEVRRAYN 374 M++ + L+R + V HG RS T A +P ++ E ALAH EV AY Sbjct: 315 MSNMAMANVLERMQRSDITV-HGFRSTFRTWAAERTLYPKEMPEMALAHKVGTEVEEAYR 373 Query: 375 RSDYLEQRRPMMQWWAD 391 R+D E+RR +M+ WA+ Sbjct: 374 RTDLFERRRALMRDWAE 390 >UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FSX1_PSYA2 Length = 444 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 110/405 (27%), Positives = 185/405 (45%), Gaps = 30/405 (7%) Query: 9 TDTEIKAA----KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 TD++IK A D Y + GL L I+ + + ++ R+ P+T +R + GAYP Sbjct: 44 TDSQIKQAIKEHDSGDEVYTIQGYKGLNLYIRDNKTTTFRHRFTSPVTGKRKNFTLGAYP 103 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +L AR + + LLA IDP H ++ N + A TF +A+ W + S Sbjct: 104 VFTLEQARDMYRNNLSLLAGGIDPVFHHQD-AHNKKRAMP-TFSELADEWLQSQIASKQF 161 Query: 125 DYADDIWRSLERD----IFPA--IGDISITEIKAHTLVKAVQPVQARG--ALETVRRLCQ 176 ++ R++E+ + A IG + I IK +++A++ ++ + + VR +CQ Sbjct: 162 EH-----RTIEQKRTHIAYAAAYIGRMPIDHIKTPDVLRAIKDIEKKTIPTAKRVRGVCQ 216 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGK-AFEKPQKKNMPS-IRPDQLPQLMHTMRTAS-ISM 233 RI + I G ID P++ + KP+ ++ + I P +L+ + + + Sbjct: 217 RIFALAI---GQGYIDNNPAIAVADLMLPKPKTEHHHAIIEPIAFGKLLSDIDSVTDFYG 273 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIP----AARMKMNRDHTVPLSDGAL 289 + + Q L R + RWD IDF+A W R M VPL A+ Sbjct: 274 HAQNILKLQALLFQRNGDMCSMRWDAIDFDAKTWTFSPQKTGNRGDMVASLVVPLPTQAI 333 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 L + L+ ++F + + + + Q +N L R G V HG R+ A T + E Sbjct: 334 EHLRALHALTSKTPYVFYNSRRKEKFEHQQQLNKFLWRLGYKDVHTPHGFRASARTLMVE 393 Query: 350 E-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 + G + E L H ++ RAYNR +++RR MMQ WAD + Sbjct: 394 QLGISETLAELQLGHNVRDANGRAYNRVTMIDKRRDMMQRWADYL 438 >UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JEM3_OLICO Length = 390 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 126/404 (31%), Positives = 189/404 (46%), Gaps = 37/404 (9%) Query: 1 MARKTKPLTDTEIKA-AKPKDADYQLY-DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 MAR L++T+IKA +KP +Y DGDGL + ++ +GS+ W F Y R +QR + Sbjct: 1 MARNK--LSETKIKAISKPG-----IYGDGDGLFIRVQKTGSRNWLFVYRR--GQQRNEI 51 Query: 59 SFGAY----PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA-KTNTFLLVAER 113 G Y VSL AR+ + LA+ DP R S+ A K TF V E+ Sbjct: 52 GLGGYGQGTAPVSLPLAREKADAIRQQLARGEDP--------RASRNAIKPKTFGEVMEQ 103 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 K++ T + W+ R + + + +I + + P A ET R Sbjct: 104 LLTAKESEWTNPKHAEQWKMTLRTYAKPLHRLPVADIVMGDVKDCILPHWAERP-ETAAR 162 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--PQKKNMPSIRPDQL-----PQLMHTM 226 L RI V+ YA A G EK P+++ + L PQ + + Sbjct: 163 LRSRIQAVIDYAIAHEWRSAGNPARWGGLLEKVMPKRQKLSRGHHAALAYADAPQTIEAL 222 Query: 227 RTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSD 286 R +S + + F+ LT+ R EA + + E+D A W +PA RMK ++H VPL+ Sbjct: 223 RHSSGTAARAVEFI--ALTVARSGEARYSTFAEVDVKAKTWTVPAERMKAGKEHIVPLTA 280 Query: 287 GALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRS-IAST 345 AL I+E M+ + G ++IF + ++P++ + AL+ A HGLRS Sbjct: 281 RALQIVEAMRQRATG-DYIFGG-AQDSKPISDTAMVKALRLASPDKAATLHGLRSTFRDW 338 Query: 346 ALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWW 389 A ++ FP D+ E ALAH +E RAY RS L QRR +M W Sbjct: 339 AGDKTKFPRDIAEMALAHAVGDETERAYRRSTALAQRRKLMDAW 382 >UniRef50_B5J8B6 Site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=B5J8B6_9RHOB Length = 436 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 111/388 (28%), Positives = 182/388 (46%), Gaps = 35/388 (9%) Query: 31 LTLLIKSSGSKLWQFRYYRPLTKQ------RTKQSFGAYPAVSLSDARKLRAESKVLLAK 84 L L++ SG++ W R K RT G V+++ AR E + + + Sbjct: 65 LYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLGGADIVTINQARDRALEYRRMAKQ 124 Query: 85 DIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK----TSVTEDYADDIWRSLERDIFP 140 ++P+ + + + +E + W N K + DYA FP Sbjct: 125 GLNPRFNAQRDIPTFEEFAQQVHIERMPTWKNAKHGQQWINTLRDYA-----------FP 173 Query: 141 AIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAV-PSVNI 199 IG + + I ++ + P+ ET RRL QRI V+ A++ G P I Sbjct: 174 KIGRMPVDSIDQPEVMMCLSPIWTEKH-ETARRLAQRIKTVLDVARSKGFRSGENPVTAI 232 Query: 200 GKAFEKPQKKNMP----SIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEA 255 A P+ K P ++ +P ++T + +MS L + LT +R +E Sbjct: 233 KDAQALPKVKTKPKHHKAMHWRDVPAFYTDLKTRN-AMSANAL-RFTCLTGSRTSEVLGM 290 Query: 256 RWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQP 315 RW+EIDF+A W P RMK H VPL+D L+I+E +K L +++F + K ++P Sbjct: 291 RWEEIDFDARLWTCPIERMKTGEVHRVPLTDEMLSIIEPLKALKS--DYVFEGQ-KRHKP 347 Query: 316 MNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPP-DVIEAALAHVDKNEVRRAYN 374 +++ ++ L+R + GV V HG RS +E P ++ E +L+H ++V RAY Sbjct: 348 LSNMSMLMLLRRMDVEGVTV-HGFRSTFRDWASEVASAPREIAEMSLSHRVGSDVERAYA 406 Query: 375 RSDYLEQRRPMMQWWADLVKAADSGSIV 402 RSD +E+RR +M+ W+ V A +SG IV Sbjct: 407 RSDLIEKRRALMKRWSMYV-AGESGQIV 433 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 18/389 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ +P+++ ++L DG GL LL+ SG + W RY +R + G YP +S Sbjct: 3 LSDAQLRKIRPRESRFELTDGKGLVLLVLPSGRRSWLLRYQFEGKPRRI--TLGEYPDMS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-KTSVTEDY 126 L AR ++ ++ + +DP + E+ + + T + LL +W+++ K S + Sbjct: 61 LLQARNASEATRSIIKQGLDPALKRTEEKTAHKTSPTVSDLLTE--YWDMELKESPS--- 115 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + R +E+D+ P G + EI + V+AR + T RL + + +A Sbjct: 116 GKERRRLVEKDVLPPWGKRKVAEITRRDAALLLDTVRARAPV-TGNRLQGVLVRMFNFAA 174 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA-SISMSTRCLFMWQLLT 245 G+++ P + + K E+P+ + + L + TA I ++ LLT Sbjct: 175 ERGVLEHSPLMGLRKKKEQPRSRVLADKEIKLLWDALALDNTAMDIYRVSKLALKMILLT 234 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS-GGREF 304 RP E WDEID + W IPA RMK H VPL AL I+E + S G F Sbjct: 235 GQRPGEVCGMTWDEIDGDT--WNIPAERMKSKEPHNVPLGSMALEIIEQARRYSPRGSTF 292 Query: 305 IFPSRIKPNQPMNSQTVNAALKR----AGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +F S P+ +++ A+ R G+ H LR T L E G V E Sbjct: 293 VFKSSHFKEGPITPHSLSKAILRHWQEMGVTERFTPHDLRRTLRTRLAEIGVDDVVGERV 352 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWW 389 L H + + YNR Y +++R + W Sbjct: 353 LGHKLQG-IMAVYNRHSYDKEKRQALALW 380 >UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobacteriaceae RepID=B7UT12_ECO27 Length = 411 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 178/393 (45%), Gaps = 28/393 (7%) Query: 23 YQLYDGDGLTLLIKSSGSKLW--------QFRYYRPLTKQRTKQSFGAYPAVSLSDARKL 74 Y + + DGL L I++ S+ W + +R G YP VSL++AR Sbjct: 25 YAVGNVDGLYLRIRNQ-SRAWVLCVAMGTRINNLGRTVPRRLNMGLGPYPEVSLAEARDK 83 Query: 75 RAESKVLLAKDIDP-QEHQKEQVRNSQEA-KTNTFLLVAERWWNVKKTSVTEDYADDIWR 132 E + + I+P QE +++ R A K TF E VK + + WR Sbjct: 84 ARELRKQIRNGINPLQEKHEQKARQEILARKKKTFAECCEEVLEVKDSEMKNKKHLAQWR 143 Query: 133 S-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLI 191 S LE +P IG +++EI L+ ++P+ ET RL RI V+ YA+ Sbjct: 144 STLETYAYPFIGKKAVSEITKVDLLAILEPIWLTKN-ETASRLRGRIETVIDYAKAKEYF 202 Query: 192 DA-VPSVNIGKA---FEKPQK----KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 + P+ G +P K K+ ++ +Q+ M +R S +S R L + + Sbjct: 203 EGDNPAAWKGMLKPLLPQPSKVQITKHHAALPYNQIGSFMKELRERS-GVSPRAL-EFAI 260 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT R E A W EID W IPA+RMK ++H VPLSD A+A+L+ + P G Sbjct: 261 LTAARSGEIRGAEWSEIDLEGKTWTIPASRMKAAKEHRVPLSDAAVALLKAL-PRFKGIS 319 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALA 362 F+FP+ K ++ + A LKR G L HG RS E +P +VIE ALA Sbjct: 320 FVFPATRKGQ--LSDTALLAVLKRMGYTD-LTQHGFRSTFRDWAGETTNYPREVIEHALA 376 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 H ++ AY R +R +M W+ A Sbjct: 377 HQLADKAEAAYQRGTLWPKRVALMDEWSGFCLA 409 >UniRef50_UPI0000F2F6E4 putative integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2F6E4 Length = 353 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 164/347 (47%), Gaps = 29/347 (8%) Query: 81 LLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK--KTSVTEDYADDIWRSLERDI 138 ++A+ +DP+E + + +++ NT V W + + ++ED + R E + Sbjct: 1 MIAEGVDPKE--QLSILLAKKNNVNTLENVVRVWLDAYAVRKPLSEDTKNKQLRKFENHL 58 Query: 139 FPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVN 198 FP D +I +I L A+ + QRI +I + + + N Sbjct: 59 FPKFKDKAIEQITLRDLKDALNVIYDHSPDN-----AQRIRASLIQVYSYAVQHSYIQTN 113 Query: 199 IGKAFE----KPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAA 253 I + E +K + + R D +PQL+ ++ S + T+ + L T R +E Sbjct: 114 IARDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNPLTKLCLLLGLHTFLRSSEIR 173 Query: 254 EARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEMMKPLSGG 301 ARW+EIDF A W+IP R KM +H VPLS ++ ILE + SG Sbjct: 174 FARWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHLVPLSKQSIEILEKVYQYSGD 233 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS-HGLRSIASTALNEEG-FPPDVIEA 359 +F+FPS ++ T N AL+R G +S HG R++A +AL E F D +E Sbjct: 234 CDFVFPSLNNKRIFISENTPNDALRRMGYTKEEISFHGFRALARSALGEMSIFSRDALEK 293 Query: 360 ALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 ++H ++NE AY ++YLE+R +MQ W+D + A ++G + H Sbjct: 294 QMSHQERNETVGAYTHIAEYLEEREKIMQIWSDWLSAIENGDYISPH 340 >UniRef50_UPI0001BCF971 integrase n=1 Tax=Mannheimia haemolytica serotype A2 str. OVINE RepID=UPI0001BCF971 Length = 188 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 107/188 (56%), Gaps = 6/188 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLT--KQRTKQ 58 MAR T PL T+I AKPK+ +Y L DG GL LL+K +G+KLW+F YY+P T K++ Sbjct: 1 MARSTTPLNSTQIDKAKPKEKEYTLADGKGLYLLVKPNGTKLWRFNYYKPYTNPKKQALI 60 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 S G+YP VSL AR+ + E LLA++IDPQ H+ E Q NTF VAE+W K Sbjct: 61 SIGSYPDVSLQQARQTKDEYNALLAQNIDPQAHRIETTITEQNRLVNTFAYVAEQWKASK 120 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQ--PVQARGALETVRRLCQ 176 + + WR E + P + D+ I +I +VK V P +A A + R+ + Sbjct: 121 EDVIKPLTLSKNWRIAEIYLLPHLKDLPIDKI-IPAVVKPVLDIPYKANKA-KMFRKSMR 178 Query: 177 RINEVMIY 184 +NE++ Y Sbjct: 179 LLNEILDY 186 >UniRef50_A4AB16 Phage integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4AB16_9GAMM Length = 449 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 110/424 (25%), Positives = 186/424 (43%), Gaps = 42/424 (9%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKS--SGSKLWQFRY-YRPLTKQRTKQSFGAYP 64 LT +KA +D L DG GL ++ +G QF Y YR K RT + +P Sbjct: 6 LTTARLKAVAEEDIGTILNDGGGLRGRVRKNRAGDLTVQFEYKYRDGKKYRTSK-VEQWP 64 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ--------------------EAKT 104 SL++ R++ K LAK DP E +K + +Q A T Sbjct: 65 KRSLAEIREIYRSIKTGLAKGEDPIELRKAERLEAQLDQANRLETQRRELERLAFEAANT 124 Query: 105 NTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA 164 T +W ++ + A+ I R++++DI PA+G + + +IK L+ + V Sbjct: 125 RTLTDAIYQWEKLELSRRKRGGAEAI-RAIKKDIIPALGGMPLADIKRAMLIDQLDRVVE 183 Query: 165 RGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSIRPDQLPQLM 223 RG+L L + + YA ID P + K QK+ + +++ +L Sbjct: 184 RGSLVMANHLFGDLKQFFTYAVARDWIDVHPLAGLTKERIGGRQKERDRYLSDEEITELT 243 Query: 224 HTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVP 283 +++A++ ++T L T R E ++ARW++I+ EW+IPA K R H + Sbjct: 244 ERLQSANLLITTEQSIWIMLSTCCRVGELSQARWEDIELEQGEWRIPARNSKNARSHIIY 303 Query: 284 LSDGALAILEMMKPLSGGREFIFPSRIKP---NQPMNSQTVNAALKRAGL---------- 330 LS+ A E + ++ G + PSR + +Q S+ + +++ L Sbjct: 304 LSEFAKIQFEELHRITAGSNWCIPSRSREAHIDQKSISKQIRDRVRKTSLKGRSNSSGTL 363 Query: 331 ---GGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQ 387 GG H LR +T + E G +VIE L HV+ N+++R Y R + ++R + Sbjct: 364 LLSGGPWTPHDLRRTGATMMGELGVMGEVIERCLNHVEINKLKRTYQRHELRAEQREAWR 423 Query: 388 WWAD 391 D Sbjct: 424 LLGD 427 >UniRef50_UPI00016B13C2 phage integrase family protein n=1 Tax=Burkholderia pseudomallei BCC215 RepID=UPI00016B13C2 Length = 324 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Query: 13 IKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDAR 72 ++ AK A Y+L DG+G+ LL++ +G+K W+ Y R L KQ+T + G YPAV+L+ AR Sbjct: 1 MRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSY-RFLGKQKT-LALGVYPAVTLATAR 58 Query: 73 KLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWR 132 K R E++ +A IDP E +KE R ++ A N+F VA W++ ++ ++ YA + Sbjct: 59 KKRDEAREQIAAGIDPGEAKKEARRAAEIAAANSFEAVAREWFDSQRPGWSDGYAAKVLN 118 Query: 133 SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLID 192 SLE D+FP IG I EI + ++ V+ V+ARG ET +R+ QR V Y TG Sbjct: 119 SLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIMTGRCS 178 Query: 193 AVPSVNI 199 P+ +I Sbjct: 179 RNPAADI 185 >UniRef50_B4W6V7 Site-specific recombinase, phage integrase family protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W6V7_9CAUL Length = 416 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 125/414 (30%), Positives = 183/414 (44%), Gaps = 30/414 (7%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K LTD E K A A DG GL L +K++G++ W F Y K+R + G Y Sbjct: 2 KLNKLTDREAKTA----AAGLHSDGGGLYLNVKTTGARAWVFVYR--TGKRRREMGLGGY 55 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAK------TNTFLLVAERWWNV 117 P V L +AR E++ +A+ DP E ++ + + TF +VA++ + Sbjct: 56 PGVKLVEARAAAVEARAQIARGEDPIEARRANAPPAVDPTPIDAPAAATFKVVAQQVIDS 115 Query: 118 KKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + W RSL R P + D +I ++ + P E+ +L Sbjct: 116 LSPGWRGAKTKEGWERSLLRQAAP-LADKLPADITTQDVLDVLNPYWT-SRPESAGKLRD 173 Query: 177 RINEVMIYAQNTGLIDAV-PSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTASI--- 231 RI V+ A+ GL + P+ G A P+++ + LP A++ Sbjct: 174 RIETVLDVAKVNGLREGENPARWRGHLALMLPKRRKLSKGHHRALPYERAAGFMAALLAE 233 Query: 232 -SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 +M R L + +LT R A W EI W IP ARMK RDH VPLS A A Sbjct: 234 RAMGARAL-SFVILTGVREGVVRTATWGEISPAGDLWTIPKARMKSERDHRVPLSAAARA 292 Query: 291 ILEMMKPLSG------GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRS-IA 343 +L + P + IFP KP +P+++ V LK G+ HG RS + Sbjct: 293 VLVGVNPTGSSDGVPPAGQLIFPGG-KPGRPLSNTAVAKPLKELGVAADATIHGFRSTLR 351 Query: 344 STALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 A +E P +VIEAALAH+ +E +AY R D LE+RR +M W + D Sbjct: 352 DWAGDETDHPREVIEAALAHLVGDETEQAYRRRDALEKRRRLMDDWGTFLTTPD 405 >UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUK8_9GAMM Length = 446 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 106/419 (25%), Positives = 185/419 (44%), Gaps = 28/419 (6%) Query: 10 DTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLS 69 D IKA KD Y + GL L I+ +G ++ RY P T +R + G+YPA SL+ Sbjct: 13 DKFIKAGVSKDTSYPIAGFKGLELRIRPNGKAEFRHRYTHPYTGKRPYMTLGSYPAFSLA 72 Query: 70 DARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADD 129 A++ ++ LLA+ IDP H++++ A NTF VA+ W N + + A Sbjct: 73 QAKQAYNDNMALLAQTIDPLTHKEQENAKQAYALDNTFEAVAKDWLNEQTNNPDYVRAKQ 132 Query: 130 IWRSLERDIFPAI---GDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + E + P I G + I I +++ ++ +Q + ++ R+ + +A Sbjct: 133 TIVNWEYQLKPLIATFGKMPIGSITTPQVLRLLREIQ-KTHIQKGNRVKAIAGRIFAHAV 191 Query: 187 NTGLIDAVPSVNI--GKAFEKPQKKNMPS-IRPDQLPQLMHTM-RTASISMSTRCLFMWQ 242 GLI+ P + + +A + + + P+ I P + +L+ + + + + + Sbjct: 192 INGLIEHNPVLQLAGARALKPTRSDHRPALITPAEFAELLKEIDNITNAKLFQKEILQLL 251 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDH----TVPLSDGALAILEMMKPL 298 LT R + +W +I A W + K D VPL+ +AILE M + Sbjct: 252 ALTFVRIGDVCAMKWADIHLEAKMWVFEPQKGKNRHDMVDCLVVPLAPQTIAILERMHEI 311 Query: 299 SGGREFIF-PSRIKPNQPMNSQTVN-----AALKRAGLG---------GVLVSHGLRSIA 343 +GG E++F + K Q + Q +N ++ +AG+G V HG R+ A Sbjct: 312 TGGMEYVFYTGKRKKGQHADPQQINRILNDPSMNKAGMGKNYCGKGYLNVHSPHGFRASA 371 Query: 344 STALNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 T L E G+ + E + YNR + + +R MM WA+ + SG + Sbjct: 372 KTLLMERLGYNHLITEIQSGRSMPDVYGNTYNRMEAINERIKMMNDWANYLDQLKSGKM 430 >UniRef50_B6WTC3 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WTC3_9DELT Length = 269 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 5/258 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ +IKA KP + + YD GL L + +G K W+F+Y + K+ + G +P VS Sbjct: 4 LTELKIKAIKPSEKMARYYDSGGLYLQVSPTGGKYWRFKYR--VEKKEKLVALGTWPQVS 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR+ R + + +A DP +K R TF VAE W N + +E +A Sbjct: 62 LKEAREKRDQCRQEIAAGNDPMLLKK--ARAEAACPGRTFQEVAEAWRNNMENVWSESHA 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I L +++P +G I I+ ++ ++ ++ARGA ET +R+ ++ Y Sbjct: 120 KTIRERLALNVYPVLGKKDIAGIRPTEILAMLRKIEARGAYETAQRVLGICGQIFRYGVA 179 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 GL+++ PS ++ A Q K + +I P ++ L+ M + R + LT Sbjct: 180 VGLLESDPSRDLRGALVPHQGKQLAAITDPAEVGALLLCMDQYKGGVVVRAALQFSALTF 239 Query: 247 TRPAEAAEARWDEIDFNA 264 RP E A W E+DF A Sbjct: 240 CRPGEIRHAEWGEVDFEA 257 >UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7I5J5_THIIN Length = 401 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 116/401 (28%), Positives = 188/401 (46%), Gaps = 36/401 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT E++ D +++ GL L ++ GS LW FRY + + ++QS G A++ Sbjct: 6 LTAQEVRKWSKVDGLHRV--ATGLYLRVRG-GSALWTFRYM--VAGKASEQSLGPISALT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DA AE + + + D V + ++TF VA + W K Sbjct: 61 LADALAKAAEVRAKIRRGEDFALRPSATVVPT---PSDTFEEVALQLWESMKPGWKNPKH 117 Query: 128 DDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D W +L FP G +++EI ++ A+ P+ + ET RL QRI V+ A+ Sbjct: 118 ADQWINTLRMYAFPRFGRKAVSEIGTEEVLAALTPIW-QTKHETATRLRQRIEAVLSAAK 176 Query: 187 NTGL------------IDAV-PSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISM 233 GL ++A+ P+++ +K + K+ ++ ++P M +R + +M Sbjct: 177 ARGLRAGENPAAWRGHLNALLPTIS-----KKRRVKHFEAMDWREVPAFMAQLRQRA-NM 230 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 S L + +LT R W EID W IPA RMK +H VPLS A+ +L+ Sbjct: 231 SAWAL-QFTILTALRTGTVIGTPWSEIDLERRLWVIPAERMKAQVEHRVPLSRQAVELLQ 289 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRS-IASTALNEEGF 352 + P G +++F KP +++ + L+ G+ L HG RS + A F Sbjct: 290 AL-PRQEGSDWVFWGARKPT--ISNMAMLELLR--GMRPGLTVHGFRSSFSDWAAESTHF 344 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 P +E ALAH+ N+V AY R D +E+RR +MQ W D + Sbjct: 345 PSQTVEMALAHMITNQVEAAYRRGDLIEKRRELMQAWGDYL 385 >UniRef50_A5G0X3 Putative uncharacterized protein n=2 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X3_ACICJ Length = 268 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 131/268 (48%), Gaps = 7/268 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD I+ A+ +D Y+++D GL LL+ +G KLW+FRY + + S G Y V Sbjct: 2 LTDIAIRKAQIRDKPYKMFDSYGLYLLVTPAGGKLWRFRYK--IGGKDKLLSIGPYSEVM 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS AR R E++ L DP +K Q+R F VA W + K+ TE + Sbjct: 60 LSAARDARDEARAGLRAGRDPSLVRK-QLRAQAANDDRKFEKVACDWHTLNKSRWTERHT 118 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+ SLE+ +FP +G++ + I ++ ++ ++AR ALET RR+ QR++ + ++A Sbjct: 119 ADVMISLEQMVFPLLGNVDVAVITPPMVLDVIRRIEARPALETARRVRQRMSAIFLFAMG 178 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 GL P+ I KA K P++ ++ + + TR + LT Sbjct: 179 LGLATTDPAAVIQKAMAPMTKGRQPAVVTLEEAREALAACEAIPAHPVTRLAMRFLALTH 238 Query: 247 TRPAEAAEARWDE---IDFNASEWKIPA 271 RP E RW E ++ + W IPA Sbjct: 239 VRPGEVHGTRWTEFEGLEGDEPLWLIPA 266 >UniRef50_B5AXB8 Putative integrase n=1 Tax=Escherichia coli RepID=B5AXB8_ECOLX Length = 396 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 110/197 (55%), Gaps = 16/197 (8%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M+R T LTD ++++ KP+D Y+L DG GL L + +GSK W+ +Y RP K+ + + Sbjct: 1 MSRNTLNKLTDRQLQSTKPRDKTYKLSDGGGLYLEVSQTGSKYWRMKYRRPSDKKEDRLA 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW----- 114 FG YP +SL DAR+ R +K LL K IDP+ Q+ ++E TF + +W Sbjct: 61 FGVYPTISLQDAREKRDNAKKLLVKGIDPKAEQR--AAKAEEKGAFTFETIGRQWVESHQ 118 Query: 115 -WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 WN ED+ + RSLE IFP IG I +++A T++ + V G +T R Sbjct: 119 MWN-------EDHRKRVLRSLEMYIFPHIGTSDIRKLEAMTILPLFKKVDDAGKHDTANR 171 Query: 174 LCQRINEVMIYAQNTGL 190 L QR+ +++ A+ +G+ Sbjct: 172 LKQRVKDIIHSARLSGI 188 >UniRef50_B1JLR8 Integrase family protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JLR8_YERPY Length = 269 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 16/188 (8%) Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKM 276 A+IS+S LL R +E ARW E+DF + W IP R KM Sbjct: 78 AAISVSGWVAVELTLLVFIRSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKM 137 Query: 277 NRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--L 334 H VPLS ALAILE +K +SG RE IF P +PM+ TVN AL+ G + Sbjct: 138 RTPHLVPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEV 197 Query: 335 VSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADL 392 HG R++A ++L E G + D +E ++H ++N VR AY +++++L++RR M+QWWAD Sbjct: 198 CGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADF 257 Query: 393 VKAADSGS 400 + S Sbjct: 258 FGGKQAAS 265 >UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TXN0_MARAV Length = 396 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 111/403 (27%), Positives = 178/403 (44%), Gaps = 56/403 (13%) Query: 28 GDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ---SFGAYPAVSLSDARKLRAESKVLLAK 84 G GL + I G+K W +R+ + R KQ S G YP SL +AR + ++ LLAK Sbjct: 6 GGGLAIRISIRGTKTWFYRF-----RFRGKQDAVSLGRYPTTSLLEARDVHGDACALLAK 60 Query: 85 DIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV---------KKTSVTEDYADDIWRSLE 135 I+P++ KE + +++ T L + W V K+T + WR Sbjct: 61 GINPKKAFKESKKVAEQTWTGQELF--DDWIRVYSSTPSTRTKRTPSEQVVRQTTWR-WN 117 Query: 136 RDIFPAIGDI---SITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLID 192 + + +G I +IT+ A +L+ AV + +R E R+ +N + A GLID Sbjct: 118 KYLRRTLGQILIPTITKQVAASLISAVSELNSR---EQARKCLTILNGMFGLAVAKGLID 174 Query: 193 AVPSVNIGKAFEKPQK----KNMPSIR---PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 P + +P K K P R P ++ + + +S+ S R LLT Sbjct: 175 ENPCYGL-----QPSKLGASKGSPRSRVLTPSEMKRFWEALEDSSLDTSVRAALKAILLT 229 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E +A+W +IDFN + W +P K R HTVP+S A+ +++ L ++ Sbjct: 230 GLRRGEICQAKWSDIDFNTNVWNLPPEITKSRRKHTVPIST---ALKNLLQSLDMDGTYV 286 Query: 306 FPSRIKPNQPMNSQTVNAALKR------------AGLGGV--LVSHGLRSIASTALNEEG 351 F S P QP+ S ++ A+ R A L G+ H LR +T L E Sbjct: 287 FRSTRAPWQPIGSNSLTTAIARLQGIKTQQVNEKAPLFGLERFSVHDLRRTVATGLGEYC 346 Query: 352 -FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 PP VI L H+ + + Y R+ +++ ++ W+ V Sbjct: 347 ETPPHVIRRILNHLSDDRLEDIYQRATLFDEQAKALERWSTWV 389 >UniRef50_Q0A9S4 Phage integrase family protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9S4_ALHEH Length = 464 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 121/458 (26%), Positives = 195/458 (42%), Gaps = 73/458 (15%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSK---LWQFRYYRP------- 50 MARK E K + + + +DGDG +K S + +QF YY P Sbjct: 1 MARKGITAKKLEALQGKRRKSATREWDGDGSGFGVKVSAAGRLTFFQF-YYSPEGTTDKD 59 Query: 51 ---LTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVR-----NSQEA 102 +T +R G YP +L++AR+ E++ LL + IDPQEH +EQ + A Sbjct: 60 GNDITGKRRFMGLGNYPETTLAEAREKAQEARELLERGIDPQEHAREQQEAHRREKRKRA 119 Query: 103 KTNTFLLVAERW-WNVKKTSVTEDYADDIWRSLERDIFPAI-GDISITEIKAHTLVKAVQ 160 + T VA + W+++K + +Y + R RD+FP + D +++ + + Sbjct: 120 QRGTLAGVAALYLWHMRKRGRSREYITAVRRGFHRDVFPVVPRDTKAGDVEPEDVQLILH 179 Query: 161 PVQARGALETVRRL---CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD 217 +RGA T R L R ++ I A N N+G A K + ++ P + Sbjct: 180 RPLSRGADHTARVLRANLHRAFKLAIQADND-------PRNLGSAV-KFRVRHNPV---E 228 Query: 218 QLPQLMHTM---RTASISMSTRCLFMWQLLTITRP-------------------AEAAEA 255 +P +H R S S R +W+ P E EA Sbjct: 229 DVPLEVHVTPGDRELSFSEIGR---VWREADHATPYPQDALLLRLLLALGGQHITELREA 285 Query: 256 RWDEIDFNASEWKIPAARMK-MNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQ 314 +W E D A +W + AAR K RDH VP++ A +LE ++ L+GG+ ++FP ++ Sbjct: 286 QWPEFDLQAGQWHLKAARHKNRTRDHLVPINSTAAEVLEELRALTGGQGYLFPQLRNAHK 345 Query: 315 PMNSQTVNAALKRAGLGGVLVSHG----------LRSIASTALNEEGFPPDVIEAALAHV 364 PM ++ A ++ GL L + G R T ++E G P H Sbjct: 346 PMRAERPGAIVR--GLLAHLEAQGEPMEKFTASDFRRTCKTRMHEIGIPKTTTNHLHNHD 403 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 + Y+R DY +++ M+ W +KAA +G V Sbjct: 404 FGGVSAKHYDRYDYWGEKQRAMRAWDIALKAAIAGEPV 441 >UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas putida RepID=B0KFC6_PSEPG Length = 436 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 180/387 (46%), Gaps = 26/387 (6%) Query: 27 DGD--GLTLLIKSS------GSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAES 78 DGD GL L +++S S+ W+ +Y L + G YP V L +AR+L + Sbjct: 43 DGDVPGLYLQVRASLKPGKSPSRHWRLKYR--LRGKENVYVIGRYPDVGLKEARELARAA 100 Query: 79 KVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDI 138 + +A IDP + +K ++ + TF VAE W K + +L+ I Sbjct: 101 RNSVANHIDPLKAKKAKIEAQWLNEARTFAYVAEEWMKFKSADLVSKSVAGFRGALQNHI 160 Query: 139 FPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLID-AVPSV 197 PAIG+ ++EIK + + ++ + + RR+ I ++ +A+ G ++ V Sbjct: 161 LPAIGERPVSEIKLEHITAIITELRYKRIMAMARRVRTIIRSILGFAEGRGWVERNVALS 220 Query: 198 NIGKAFEKPQKKNMPSI-RPDQLPQL---MHTMRTASISMSTRCLFMWQLLTITRPAEAA 253 N + + + P+I RP L + + + S++ + R L +L RP E Sbjct: 221 NTEELKIRHVVTSNPAIERPADLGKFLLRLDDLNLGSVAYAMRLL----VLLPVRPGELV 276 Query: 254 EARWDEIDFNASEWKIPAARMKM--NRDHTVPLSDGALAIL-EMMKPL---SGGREFIFP 307 + RW+++D ++W+ ++ K H VPL + AL +L E+ K G ++F Sbjct: 277 KMRWEDVDLIGADWRYVVSKTKHLDKSKHIVPLPEQALVLLRELHKDRVVDDAGNGWVFG 336 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAALAHVDK 366 S + P + +++ ++ +L++ + +HG R+ T +E G P V+E +L+H Sbjct: 337 SPVYPGRSIDATSILKSLQKVWPEYAITAHGFRATYRTIAHEHLGIDPIVLELSLSHRMP 396 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 + Y R+ L QRR Q WA+ + Sbjct: 397 GALGAVYARAQLLSQRREAAQLWANYL 423 >UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12EX0_POLSJ Length = 410 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 113/402 (28%), Positives = 186/402 (46%), Gaps = 41/402 (10%) Query: 23 YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLL 82 Y + GL L +K SG++ W R + R G YP V+L+ AR ++ + Sbjct: 22 YAVGGVAGLHLWVKPSGNRSWILRVL--VGAIRKDIGLGGYPDVTLAGARDAARRARDQI 79 Query: 83 AKDIDP--QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWR-------- 132 + ++P Q Q + + + +AK TF + + ED D+ WR Sbjct: 80 LQGVNPIEQRRQAKALLMADQAKAKTFKDCS--------AAFIEDRGDE-WRNPKHRQQW 130 Query: 133 --SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ---- 186 +LE FP IG + + +I +++ ++P+ + ET R+ RI V+ +A Sbjct: 131 HNTLETYAFPFIGGLFVRDISLAHVLEVLRPIW-KTKTETAARVRGRIETVLDWAAVRGY 189 Query: 187 NTGLIDAVPSVNIGKAFEKPQK----KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 G A ++ + KP K ++ ++ D L + +R M R L + Sbjct: 190 RAGDNPARWKGHLDQVLPKPSKVKKVEHHSAVGLDDLAGFIAAVRRVP-GMGARAL-EFA 247 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT R E A W E D A++W +P RMK +H VPLS A+ +L+ + P G Sbjct: 248 ILTAARSGEVRGALWSEFDLKAAQWIVPPERMKAGEEHRVPLSKQAIKLLKSI-PRFEGS 306 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAAL 361 + +F IK Q ++ T++A ++R + V HG RS +E FP ++ E AL Sbjct: 307 DVVFCG-IK-GQVLSDMTLSAVMRRMEVNA--VPHGFRSTFRDWASERTNFPRELAEKAL 362 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA-ADSGSIV 402 AH +++V AY R D L +R MMQ WAD + + G++V Sbjct: 363 AHTIESKVEAAYRRGDLLAKRMQMMQAWADFCETPVNKGTVV 404 >UniRef50_B5J7B6 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=B5J7B6_9RHOB Length = 446 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 114/413 (27%), Positives = 182/413 (44%), Gaps = 49/413 (11%) Query: 24 QLYDGDGLTLLIK--SSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVL 81 + +DG GL L+++ SGS+ W R ++ +R + G P V+L+ AR+ ++ Sbjct: 41 KYHDGGGLGLMLRVEPSGSRRWVQRIV--ISGRRREIGLGTPPVVTLAAAREAALDNMRT 98 Query: 82 LAKDIDPQEHQKEQVRNSQEAKTN-TFLLVAERWWNVKKTSVTEDYADDIWRS-LERDIF 139 + DP V + A+T TF AE K + D WRS L+ Sbjct: 99 VQAGNDP-------VAIRRNARTFLTFATAAEHAIAAKSSEFRSDKHRKQWRSTLDTYAL 151 Query: 140 PAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSV-- 197 P +G + + ++ +++ ++P+ ET RL RI ++ +A G + + Sbjct: 152 PILGALPVGKVNTADVLRVLEPIWTE-KTETASRLRGRIEAILSWATAAGHREGENAARW 210 Query: 198 --NIGKAFEKPQKK----NMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAE 251 N+ + KPQ+ + P++ + +R + F+ LT R E Sbjct: 211 KGNLSEMLPKPQRVAKTVHHPALASSDVSVWYAALRGRDGVAARALEFL--ALTAARSGE 268 Query: 252 AAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK------PLSGGREFI 305 W E+D W +PA RMK +R+H VPLS A ++LE M P GR Sbjct: 269 VRGMTWAEVDLTTGVWTVPADRMKASREHRVPLSAPAFSLLESMAVAPDADPTDCGRPVF 328 Query: 306 FPSRIKPNQPMNSQTVNAALKR-------AGLGGVL--------VSHGLRSIASTALNEE 350 R ++ +++A ++R G G L V HGLRS E Sbjct: 329 SAPR---GGVLSDMSLSAVMRRMQQAEIDVGCAGWLDRASGRPAVPHGLRSTFRDWTAEC 385 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA-ADSGSIV 402 G+P D+ E ALAH + V RAY RSD LE+RR MM W+D + ++G +V Sbjct: 386 GYPRDMAEMALAHDVGSAVERAYRRSDMLERRRAMMAAWSDFLDGRVETGDVV 438 >UniRef50_A3JW30 Site-specfic recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW30_9RHOB Length = 389 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 106/370 (28%), Positives = 171/370 (46%), Gaps = 23/370 (6%) Query: 30 GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDP- 88 GL L +K SG W R + R G+ P +L++AR++ E+K + DP Sbjct: 25 GLQLYVKKSGRSYWVQRL--TVNGIRRDIGLGSPPITTLAEAREVAFENKRIARAGGDPL 82 Query: 89 -QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISI 147 Q+ QK + + ++A + + W K+ A ++E +FP IG + Sbjct: 83 AQKRQKAVIPSFEQAARQVVVELGPTWRGAKE-------AASFISTMECYVFPRIGGSRV 135 Query: 148 TEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQ 207 + +++ + + V+ + A RL RI+ V ++ P+ + A KP Sbjct: 136 SNVQSSDVRNIIMDVR-KTAPTVAARLQTRISAVFKFSIAKNWRTDNPATSSALALPKPT 194 Query: 208 KKNMP--SIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNAS 265 K P S+ Q+ +H + + + T+ + +LT +R E +A W EID + Sbjct: 195 HKPKPRVSLPYLQVSGCIHAVNNSHAWVGTKLAIEFTILTASRSGEVRKAEWCEIDGDL- 253 Query: 266 EWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNS-QTVNAA 324 W P+ MK H+VPLS+ ALAILE + ++ IFP+ P M S T++ Sbjct: 254 -WNRPSEHMKEEIAHSVPLSERALAILEKAQEINNESGLIFPA---PRGGMLSDMTMSKL 309 Query: 325 LKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRR 383 +K G + HG R+ T E+ F +V E ALAH + RAY RSDYLE+RR Sbjct: 310 IKELGFAADV--HGFRTSFRTWSQEQTNFAWEVGEVALAHSVGGKSERAYARSDYLEKRR 367 Query: 384 PMMQWWADLV 393 MM W+ + Sbjct: 368 LMMAAWSSYL 377 >UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8P5_PROMM Length = 422 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 118/420 (28%), Positives = 203/420 (48%), Gaps = 45/420 (10%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLL---IKSSGSKLWQFRYYRPLTKQRTKQ--SFGA 62 LT+ E+++ K Y GD L +L +K SG K + + R KQ + FG Sbjct: 3 LTEREVRSLSVKSKRYSRSVGDSLYVLVEPVKGSGGKSFVGK-MRSNGKQIDVRIGVFGK 61 Query: 63 YPAV-SLSDAR----KLRAESKVLLAKDIDPQEHQKEQVRN-SQEAKTNTFLLVAERWWN 116 P +L AR +LR+ + DP+E QK++ R ++++ T + + + Sbjct: 62 GPGQWTLKAARDEWFRLRSWYR---ETGRDPRELQKDEKRQLAKQSSDQTLNELVDSYLI 118 Query: 117 VKKTSV--TEDYADDIWRSLERDIFPAIGDIS-ITEI------KAHTLVKAV----QPVQ 163 KT +E D L +I PA+G + ++ + K T +AV ++ Sbjct: 119 ACKTKYKQSETTIKDKKNKLSNEIIPALGGSTPVSRLGWDEKSKGRTGREAVFEITDSIE 178 Query: 164 ARGALETVRRLCQRINEVMIYAQNTGLID-----AVPSVNIGKAFEKPQKKNMPSIRPDQ 218 RG+L R++ + + YA G ++ AV + ++G E ++ P + D+ Sbjct: 179 KRGSLNQARKVLGVMRHLFDYAIERGWMERGQNPAVQARSVGAGHE---VQHNPCLSWDE 235 Query: 219 LPQLMHTMRTASISMSTRCL--FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM 276 LPQL+ + + S L L+T R RWDE+D+ A+ W +P +RMK Sbjct: 236 LPQLLDDLNRNKGNGSQVVLAAIKLDLMTFLRVGSLVPMRWDEVDYAANLWTVPGSRMKS 295 Query: 277 NRDHTVPLSDGALAILEMMKPLSGGREFIFPS---RIKPNQPMNSQTVNAALK-RAGLGG 332 ++H VPL+D +L ++ ++G ++++F S R KP+ ++ +N LK R G GG Sbjct: 296 GKNHWVPLTDPIKDLLAHLRKINGDQDYVFWSPRGRSKPH--IDESALNQHLKVRLGYGG 353 Query: 333 VLVSHGLRSIASTALNEE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 +HGLRS+ TA E F +VI+ + H ++VR+AY++S L++R M+ W D Sbjct: 354 RQTAHGLRSLPLTAGQEVLKFSAEVIQRQMDHAVGDKVRQAYDKSQLLDERWKFMRAWCD 413 >UniRef50_B7A0D7 Integrase n=1 Tax=Escherichia coli O157:H7 str. TW14588 RepID=B7A0D7_ECO57 Length = 364 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 104/318 (32%), Positives = 146/318 (45%), Gaps = 34/318 (10%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKS-SGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTDT+ + KP D GLTL S G W FRY P+T++R G YP V Sbjct: 4 LTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEV 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAER--------WWNVK 118 S+++A + + LA DP E +K + S++ TF A R W N K Sbjct: 64 SIAEAARTARIMREQLAAGDDPLEIKKAE---SEKVAIPTFADAARRVHAELSPGWENPK 120 Query: 119 KT----SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 S E+YA FP +G ++ I A + + ++PV + ET R+ Sbjct: 121 HVRQWLSTLENYA-----------FPQLGAKTLDSITAADVAETLRPVWLTLS-ETASRV 168 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQK---KNMPSIRPDQLPQLMHT-MRTAS 230 QRI+ VM + G A P + + + ++ P++ QLP + T + T Sbjct: 169 KQRIHVVMQWGWAHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDE 228 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 TR L + +LT TR EA RW EIDF+ W IPA RMK H VPLS A+ Sbjct: 229 PYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIY 288 Query: 291 ILEMMKPLSGGREFIFPS 308 ILE ++ L E +FPS Sbjct: 289 ILENIRGLHD--ELVFPS 304 >UniRef50_A1ANR7 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ANR7_PELPD Length = 453 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 120/474 (25%), Positives = 204/474 (43%), Gaps = 102/474 (21%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 TDT I+ KPK+ YQ+ +GDG + + SG +++ F Y + +R + + G YPAVS Sbjct: 3 FTDTGIRNLKPKEKMYQVREGDGFGVRVLPSGLRIFVFIY--TIAGKRRQMNLGDYPAVS 60 Query: 68 LSDARKLRAESKVLLAKD-IDPQEH------------------QKEQVRNSQEAKTNTFL 108 LS+AR+ A+++ +L+++ DPQEH +KE++ N + T Sbjct: 61 LSEARERAADARKVLSRERTDPQEHGFSWHYSPERERREMAAKEKEELENPTVKQLITRY 120 Query: 109 LVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARG-- 166 + ER+ K S ED R LE+D+ P GD ++ +++ + +Q RG Sbjct: 121 I--ERYAMKNKKSWQEDK-----RILEKDVLPLWGDRKAKDVIRRDVIQLLDGMQGRGDG 173 Query: 167 ----ALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMP-SIRPDQLPQ 221 + +RR+ + Y LI P K E P K+ ++ ++ Sbjct: 174 IITNTFKIIRRMFR-------YGVKQELIPTTPCYGFEKGDELPTTKSKERTLTETEIKA 226 Query: 222 LMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEI-----DFNASEWKIPAARMKM 276 + IS R + LLT RP E A EI +F+ E KI ++ Sbjct: 227 FWGGIDRCMISEDVRRILKLTLLTGQRPGEVASMHSSEISGRWWEFSPKETKITK---EV 283 Query: 277 NRDHTVPLSDGALAILEMMKPLSGGREFIFPS-RIKPN-------QPMNSQTVNAALKRA 328 R + L+D L+++ + +IFPS +I+ N P+ + V AL+R Sbjct: 284 PRKQRIYLTDMTLSLIREKEG------YIFPSPKIRTNVNEQPIDTPITERAVAYALRRN 337 Query: 329 GLGGV---------------------------------LVSHGLRSIASTALNEEGFPPD 355 L H LR +T L+E GF + Sbjct: 338 LLTHTVKPKPATWKKSSHQSKDKKKFIIPDDKKLDIEKFCPHDLRRTCATILSEIGFSDE 397 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS----IVLTH 405 +++A LAH+ K E+ + YN++ Y ++R+ ++ W +K+ +G + LTH Sbjct: 398 IVDAVLAHLKKGEI-KTYNKNKYDKERQKALEAWERKLKSIITGQKDNVVPLTH 450 >UniRef50_Q1YTS1 Putative phage integrase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTS1_9GAMM Length = 429 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 124/444 (27%), Positives = 199/444 (44%), Gaps = 61/444 (13%) Query: 1 MARKTKPLT-DTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MA +T L D IK PK Y L GDGL IK SG+ + RY + + + Sbjct: 1 MANRTSKLELDAIIKGKIPKR--YPL--GDGLYFTIKHSGAMSFGIRY--QINGKTDYKG 54 Query: 60 FGAYPAV--SLSDARKLRAESKVLLAKDIDP--QEHQKEQVRNSQEA-----KTNTFLLV 110 G Y V +L AR +V + + IDP +E Q ++ S +A K TF Sbjct: 55 MGGYDKVHNNLGIARAKCEAYRVQIRQGIDPKIEEQQALNLKQSAKAAEDQLKDRTFAKY 114 Query: 111 AER--------WWNVKKTSVTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQP 161 A + W NVK + WRS LE+ FP IG+ ++++ +++ +QP Sbjct: 115 AYQHIKSLEPSWTNVKTFAQ--------WRSSLEQYAFPVIGETPVSDVSRTQVLEILQP 166 Query: 162 VQARGALETVRRLCQRINEVMIYAQN-------------TGLIDAVPSVNIGKAFEKP-Q 207 + ET R+ +RI ++ A + L +PSV K + P + Sbjct: 167 IWF-DKTETADRVRRRIAAILDAAISDDLRTERNPAIWRGSLHGKLPSVETLKKAKAPTE 225 Query: 208 KKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEW 267 ++ S+ LP M ++R A + R L + +L +R E +A W E D W Sbjct: 226 ERAHASLHYAHLPMFMESLR-AQDGIGARAL-EFCILNASRTTEVLDATWGEFDLEEGIW 283 Query: 268 KIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKR 327 IPA RMK H +PLS ++A+++ +K L +F+FP+R + ++ +++ LKR Sbjct: 284 SIPARRMKGRERHNIPLSTQSIALIKQLKQLKMS-DFVFPNR-SNGKSLSQAGMSSVLKR 341 Query: 328 AG--------LGGVLVSHGLRSIASTALNEEGFPPDVI-EAALAHVDKNEVRRAYNRSDY 378 G ++ HG R T E+ + E ALAH K++ Y + D Sbjct: 342 MNKINDWKDIHGQLITVHGFRGCFKTWTTEKTDTDWLTGEMALAHKIKDKSSATYQKGDL 401 Query: 379 LEQRRPMMQWWADLVKAADSGSIV 402 +++RR +MQ ++D SG +V Sbjct: 402 IDKRRRLMQKYSDYACTTPSGKVV 425 >UniRef50_B5WB94 Integrase n=1 Tax=Burkholderia sp. H160 RepID=B5WB94_9BURK Length = 295 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 23/295 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT ++ AKP+ Y+L D D + L + SGSK+W+F Y L + + G +P VS Sbjct: 3 LTYPLLQNAKPRSKPYKLRDRDSMYLRVSVSGSKVWKFDYR--LDGKDCSYTLGRFPNVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 ++DAR+LR + L+A I P+ ++K+ + + + NT V E W + T Y Sbjct: 61 IADARQLRNAAAKLVASGIHPKAYEKQLQQQTVAHQKNTLWPVCEEWLEDNRGKWTAYYH 120 Query: 128 DDIWRSLERDIFPA-IGDISITEIKAHTLVKAVQPVQAR-----------GALETVRRLC 175 R L R + + +G + + +IK + +Q + R GA R+ Sbjct: 121 AQATRFLARYVKGSPLGTMPVRDIKVSHVYDLLQSIAKRKALAVDERKKEGAPHIAIRVR 180 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQL---PQLMHTMRTASIS 232 Q ++ + A +G +DA P A + +P R ++ ++ H + T S++ Sbjct: 181 QHLDAIFRRAIISGRVDANPVA----ALKASDAVMLPPTRHNRALDAHEVRHLLATFSVT 236 Query: 233 MSTRCLFMWQLLTIT--RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 + R LL +T R AE ARW EID ++ W IP RMKM R H VPLS Sbjct: 237 GTQRTHLAMHLLLLTSLRSAELRGARWREIDLQSAIWAIPEERMKMERPHVVPLS 291 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 171/396 (43%), Gaps = 44/396 (11%) Query: 28 GDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDID 87 GDGL + +++ G W+ RY ++ + G YPA+SL +A+ A+ K+L + ID Sbjct: 31 GDGLYIRVQTEGVAYWEVRYSVNGKRRSMVPNGGVYPAMSLVEAKAEAAKVKLLAKQGID 90 Query: 88 PQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISI 147 P ++ Q QE T + + W+ T+ + + R +DI PAIG + + Sbjct: 91 PLAERERQ----QEITIKTVNDLFDDWYQC--TAPRLKHPEIPMRMYTKDIKPAIGQLKV 144 Query: 148 TEIKA-------HTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIG 200 T++ A H +VK+ +P A L ++L ++ + + N P+ Sbjct: 145 TDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKLDVASGN-------PAAAFN 197 Query: 201 KAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI--TRPAEAAEARW 257 A +KN + +++ +R + S LL R E A+W Sbjct: 198 TADAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVALLLCLGVRKGELIAAKW 257 Query: 258 DEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSR--IKPNQP 315 E DF+ W++P R K T+PLS+ + L+ +K ++ G E++FP+R K + Sbjct: 258 SEFDFDQQVWRMPKERSKTGVGITIPLSEFVIEWLKELKIIACGSEYVFPARKASKRREY 317 Query: 316 MNSQTVNAALKR----------------AGLGGV--LVSHGLRSIASTALNEEGFPPDVI 357 + + T+N AL + G GV H LR T L PP + Sbjct: 318 IANDTLNHALAKLFGQKHDSNKQPFENLLGKAGVEHFTVHDLRRTCRTLLASLKVPPHIA 377 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E L H K + YN DYLE+RR + A L+ Sbjct: 378 ERCLNHKLKG-IEGTYNHHDYLEERREALDKLAALI 412 >UniRef50_A3UHH5 Site-specfic recombinase, phage integrase family protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UHH5_9RHOB Length = 330 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 134/268 (50%), Gaps = 8/268 (2%) Query: 133 SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLID 192 S+E +FP IG + ++ + +V+ + P+ +T R++ QRI V+ +A G + Sbjct: 63 SMENHVFPLIGRKPVDQVDSTHVVEVLTPIWLE-IPDTARKILQRIGAVLDFAHIKGWRE 121 Query: 193 ---AVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRP 249 A+ SV G + + ++ ++ ++P M + TAS + + R + + R Sbjct: 122 EEAALRSVRKGLPRQTDKVEHFKAMPYAEIPAFMKELATASPT-TGRDALRFTIYNAVRS 180 Query: 250 AEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSR 309 +E +A W EID + + W IP RMK H VPLS A++IL L + + S Sbjct: 181 SETRKAVWTEIDLDKAVWTIPGERMKAKETHVVPLSKAAVSILRRRWKLRTSDDGLVFSN 240 Query: 310 IKPNQPMNSQTVNAALKRAGLGGVLVSHGLRS-IASTALNEEGFPPDVIEAALAHVDKNE 368 N P++ T+ L+ AG+ G V HG RS A + FP +V + ALAH N+ Sbjct: 241 NGEN-PISDMTMTKLLRDAGIKGATV-HGFRSAFTDWAAEKTDFPKEVADKALAHKLSNQ 298 Query: 369 VRRAYNRSDYLEQRRPMMQWWADLVKAA 396 V AY R+D+ ++RR +M WA + A Sbjct: 299 VEAAYRRTDFFDKRRELMAVWAAFLDEA 326 >UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria RepID=B4SNF6_STRM5 Length = 397 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 103/377 (27%), Positives = 176/377 (46%), Gaps = 23/377 (6%) Query: 27 DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDI 86 DG GL L + +S +K W FRY +R + G + L++AR+ ++ ++ Sbjct: 24 DGGGLYLQVTASCAKSWVFRYR--FEGKRPEMGLGPLHVIGLAEAREAAGAARKMVQSGQ 81 Query: 87 DPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIW-RSLERDIFPAIGDI 145 DP ++ + A TF A + ++ T W R+LE P +GD+ Sbjct: 82 DPLAGRRAAAVAT--ASIPTFWEAATAYIAEREAGWTNPKHAGQWTRTLETYAKPVLGDL 139 Query: 146 SITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM----IYAQNTGLIDAVPSVNIGK 201 + I+ ++ ++P+ ET R+ QR+ V+ + + +G A ++ Sbjct: 140 RVDRIETEHVLAVLRPIWTTKT-ETASRVRQRMEAVLDAVTVQKKRSGENPARWRGHLAV 198 Query: 202 AFEKP----QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARW 257 KP + +N ++ +LP M +R+ + F +LT R A Sbjct: 199 ILPKPTAVTKVENFAALPYAELPSFMAALRSRHGEAARALEF--TILTAARTGMTLGATP 256 Query: 258 DEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMN 317 E+D A W +P +RMK +HTVPLS ALA + +P R+ +FP+ + N+P++ Sbjct: 257 GEVDLAAGTWTVPGSRMKAKVEHTVPLSTPALA---LARPRIK-RDLLFPNDLS-NEPLS 311 Query: 318 SQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRS 376 + A LKR G G + V HG RS +E +P D+ EAALAH +++ + AY R Sbjct: 312 ENAMLALLKRMGYGYITV-HGFRSTFKDWASEMTDYPDDLSEAALAHRIRDKAKAAYKRG 370 Query: 377 DYLEQRRPMMQWWADLV 393 +++RR +M WA+ Sbjct: 371 TMIQKRRELMNSWAEYC 387 >UniRef50_A4N808 DNA polymerase III subunit delta n=4 Tax=Haemophilus influenzae RepID=A4N808_HAEIN Length = 223 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 1 MARK-TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MAR +K TD+ I KP D + D D L LL+K +G+K+W+F Y P TK+R K+S Sbjct: 1 MARDFSKKFTDSYIHGIKPTDKEQLFSDRDNLYLLVKPTGAKIWRFIYTHPTTKKRIKKS 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN--V 117 FG YP++ L+ AR+ LLA++IDP E + Q + +E K+ TF +A W + + Sbjct: 61 FGNYPSILLAFAREKARIWCRLLAQNIDPAEEECMQ-QEEKEKKSVTFKELAMLWRDKRL 119 Query: 118 KKTSVTEDYADDIWRSLERDIFP--AIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 KK + E+ + ++R +E F + I + A+ P++ G + +LC Sbjct: 120 KKGELKENSIEKVYRRVELYFFDRFNFSRLLAKNINLRSFDDALLPIEGTGMCD---KLC 176 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQL 219 I ++ A + G+++ P + K F+KP KN PSI P +L Sbjct: 177 IAIKQIFDNAIDEGVLENNPFTRLSKRFKKPITKNFPSIPPKEL 220 >UniRef50_D1DCL4 Predicted protein n=8 Tax=Neisseria gonorrhoeae RepID=D1DCL4_NEIGO Length = 356 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 103/323 (31%), Positives = 150/323 (46%), Gaps = 26/323 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA K LT +I+AAK +L DG GL LL+ +GSK W+ RY ++ + Sbjct: 1 MAAHNK-LTQKQIEAAKADGKQSKLADGGGLYLLLHPNGSKYWRMRYRHGGCEK--TLAL 57 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDP-QEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G YPAVSL AR+L ++ A IDP EH + ++ + +A W+ ++ Sbjct: 58 GVYPAVSLKQARELARAARAQTAAGIDPVAEHHR-----TRPGSGRSLPEIARAWYGSRQ 112 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 ++ + RSL + I +I + K ++ + RR Q + Sbjct: 113 GQRADNTLEGDRRSLAYLTDYYKDNTDINDITTAGVSKFIEHLNRINIPACARRTVQILA 172 Query: 180 EVMIYAQNTGLID---------AVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA- 229 ++ YA G+I A P +N K KPQ P IRPD+LP T++TA Sbjct: 173 QIWDYAVQRGIITDERRNPATTARPLLNTSK--PKPQ----PHIRPDELPDFYRTLQTAH 226 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + R L + LT+ RP+ ARW +ID A W IPAA MK TVPLSD A+ Sbjct: 227 DLHPYARPLLLLAALTVPRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVPLSDWAV 286 Query: 290 AILEMMKPLSGGREFIFPSRIKP 312 IL + +G +FP I+P Sbjct: 287 EILRELHTQTGDNIHLFPG-IRP 308 >UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FR8_THICR Length = 396 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 105/404 (25%), Positives = 187/404 (46%), Gaps = 25/404 (6%) Query: 8 LTDTEI-KAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L+D +I KA P + L DG GL++ I +K ++FRY RP+ K+ G YP++ Sbjct: 5 LSDVQIRKAVHP--STKSLSDGKGLSIEIMPK-AKRFKFRYQRPVNKKINNLVLGYYPSM 61 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL AR++ + + LL K IDP+ +Q + + +L + W+ K + T+ Sbjct: 62 SLKAAREIAQQYRELLKKGIDPK-YQTSSEKVDFDHIIQLYLKKGKADWSEKHFNTTKGR 120 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 ++ ++ G+ +I + + ++ V G+ T +L I+ A Sbjct: 121 YENFLKN-------PFGNRDAAQITSFDIYNLLESVAQSGSYGTAEKLSYIISGAYSQAA 173 Query: 187 NTGLIDAVPSVNIGKAFEKPQK-KNMPSI------RPDQLPQLMHTMRTAS-ISMSTRCL 238 G++ P+ + K K +K + MP ++L + ++ ++ + +++ + Sbjct: 174 ILGMVKFNPAAGVMKQVTKTKKTQQMPHFNLTRKGESERLGRFLNDIKALNKTNIAVKTA 233 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-DHTVPLSDGALAILEMMKP 297 + L R A + + D + I A MK + D VPLS A+ +LE + Sbjct: 234 LLLSPLLFMRSGSLASLKLESYDKDNKWLLINAEDMKKDHSDFIVPLSTQAINLLETLIA 293 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAG--LGGVLVSHGLRSIASTALNEEGFPPD 355 + + ++F SR + + +N A R+G V + HGLR A+T L E GF + Sbjct: 294 ATKPKIYVFESRASKLGHIRIEAINKAKSRSGWRFDDVTI-HGLRHTATTYLTEIGFDYE 352 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 V E L H VR YN++ +L++RR MMQ WAD + +G Sbjct: 353 VTEMQLHH-KLVGVRGIYNKAMHLDKRREMMQKWADYLDNLRNG 395 >UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A1U0R6_MARAV Length = 432 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 176/404 (43%), Gaps = 34/404 (8%) Query: 23 YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLL 82 Y + GL L I SGS+ W R + +R G YP +SL+ AR E K + Sbjct: 32 YPVGGVSGLLLRITPSGSRQWILRAK--VGNRRPDMGLGPYPEISLAQARDKAREMKEKI 89 Query: 83 AKDIDPQEHQKEQVRN--SQEAKTNTFLLVAERWWNVKKTSVTEDYADDIW-RSLERDIF 139 IDP E ++ R +++ T TF E++ +K + W SL Sbjct: 90 RSGIDPLEEKRTLKRALLAEQISTLTFQKAMEKYIKMKAKEFRNPRQEKQWTNSLNTYAI 149 Query: 140 PAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVN- 198 P +G + + EI + + + P+ ET R+ RI ++ + G A Sbjct: 150 PHLGKLPVREIDLPHIKQVLDPIW-ETKTETANRVRARIENILGWCAIHGYRSAENPARW 208 Query: 199 ---IGKAFEKPQK----KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAE 251 + + + P+K + ++ D +P+ M ++ + + + F+ +LT +R E Sbjct: 209 QGYLDEVYPSPEKIKKRGHFAALPVDDMPEFMRDLKKRTGTAARALEFL--ILTASRTNE 266 Query: 252 A--------AEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 A W EID W +PA RMK + H VPL+D A+ +L+ M S + Sbjct: 267 VIGDKRIGKAGVTWQEIDLARKVWTVPADRMKSEKIHRVPLTDSAIELLKGMGEGS-PED 325 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRS-IASTALNEEGFPPDVIEAALA 362 IFP K P N+ + A LKR + + +HG RS A + +V E ALA Sbjct: 326 LIFPG-PKGGIPSNN-FLTALLKR--MERPITAHGFRSTFKDWARERTAYADEVSELALA 381 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA----DSGSIV 402 HV+ + R AY RS+ +++RR MM W +SG +V Sbjct: 382 HVNSDATRAAYARSELIDKRRLMMADWEQFCMHGETKKESGKVV 425 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteob... 546 e-154 UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepI... 461 e-128 UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobact... 435 e-120 UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio ... 434 e-120 UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobac... 422 e-116 UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophil... 416 e-115 UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX 416 e-115 UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus p... 412 e-113 UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammapro... 411 e-113 UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio s... 408 e-112 UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromon... 407 e-112 UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteria... 401 e-110 UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID... 399 e-110 UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronos... 399 e-110 UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp... 399 e-109 UniRef50_Q2T016 Site-specific recombinase, phage integrase famil... 395 e-108 UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepI... 394 e-108 UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammapro... 394 e-108 UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellacea... 392 e-108 UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria... 392 e-107 UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_... 392 e-107 UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root Rep... 391 e-107 UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4S... 388 e-106 UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio... 386 e-106 UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophi... 385 e-105 UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 Re... 384 e-105 UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacter... 382 e-104 UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomo... 382 e-104 UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VM... 379 e-103 UniRef50_D0W4G5 Site-specific recombinase, phage integrase famil... 378 e-103 UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfo... 375 e-102 UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae R... 374 e-102 UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella fer... 374 e-102 UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio R... 372 e-101 UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacte... 372 e-101 UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria Re... 372 e-101 UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas flu... 370 e-101 UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomon... 370 e-101 UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 369 e-100 UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp.... 367 e-100 UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochl... 367 e-100 UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID... 366 e-100 UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_S... 366 e-100 UniRef50_B4X5T7 Site-specific recombinase, phage integrase famil... 365 1e-99 UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae R... 365 2e-99 UniRef50_C0N6F7 Site-specific recombinase, phage integrase famil... 364 3e-99 UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillu... 364 4e-99 UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholde... 364 4e-99 UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobac... 363 7e-99 UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadacea... 363 7e-99 UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter ... 363 9e-99 UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli R... 362 1e-98 UniRef50_B7I6Z3 Site-specific recombinase, phage integrase famil... 361 3e-98 UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thio... 359 8e-98 UniRef50_A6QCY9 Site-specific recombinase, phage integrase famil... 359 1e-97 UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157... 358 2e-97 UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae ... 357 5e-97 UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacte... 355 1e-96 UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV 355 2e-96 UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=... 355 2e-96 UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enter... 354 4e-96 UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola... 354 4e-96 UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea... 353 8e-96 UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. ... 352 1e-95 UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_A... 351 3e-95 UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BV... 350 5e-95 UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholde... 350 7e-95 UniRef50_Q4K6S7 Site-specific recombinase, phage integrase famil... 349 9e-95 UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTA... 349 1e-94 UniRef50_B9D1P3 DNA integration/recombination/inversion protein ... 349 1e-94 UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriace... 349 1e-94 UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillu... 348 2e-94 UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria Rep... 348 3e-94 UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria ... 347 3e-94 UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholde... 347 4e-94 UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaprote... 347 4e-94 UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobac... 346 7e-94 UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovoran... 345 2e-93 UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetoba... 344 3e-93 UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria ... 344 3e-93 UniRef50_B6BKY5 DNA integration/recombination/inversion protein ... 344 5e-93 UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804... 344 6e-93 UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria R... 343 8e-93 UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomo... 343 9e-93 UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas inter... 340 4e-92 UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP13... 340 5e-92 UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalole... 340 7e-92 UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C... 338 3e-91 UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium ... 336 1e-90 UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacte... 335 2e-90 UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix chol... 334 4e-90 UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingell... 334 4e-90 UniRef50_A7H0X5 DNA integration/recombination/inversion protein ... 333 5e-90 UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5... 333 5e-90 UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis ... 332 1e-89 UniRef50_A7JZW2 Site-specific recombinase, phage integrase famil... 332 1e-89 UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=... 332 1e-89 UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, pha... 332 2e-89 UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales ... 332 2e-89 UniRef50_Q0C1T8 Site-specific recombinase, phage integrase famil... 332 2e-89 UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumann... 332 2e-89 UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombina... 330 5e-89 UniRef50_A4VPC8 Site-specific recombinase, phage integrase famil... 330 5e-89 UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_P... 330 7e-89 UniRef50_B9NUX0 Site-specific recombinase, phage integrase famil... 330 8e-89 UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydroba... 329 1e-88 UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobac... 329 1e-88 UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZ... 328 2e-88 UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 328 2e-88 UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion p... 327 6e-88 UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Si... 326 8e-88 UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepI... 326 1e-87 UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0... 325 2e-87 UniRef50_B8F737 Phage integrase family site specific recombinase... 324 4e-87 UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria ... 324 4e-87 UniRef50_C8NCE3 Phage integrase family site-specific recombinase... 323 6e-87 UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID... 323 8e-87 UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp... 322 2e-86 UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enteroba... 321 3e-86 UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Vermineph... 320 4e-86 UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root Rep... 320 5e-86 UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrop... 320 6e-86 UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonad... 320 7e-86 UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria ... 320 9e-86 UniRef50_D0CDZ4 DNA integration/recombination/inversion protein ... 319 1e-85 UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni C... 318 2e-85 UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteur... 318 2e-85 UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IG... 317 5e-85 UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 315 2e-84 UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcu... 315 2e-84 UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 R... 314 4e-84 UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butz... 313 6e-84 UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatu... 308 3e-82 UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepI... 307 5e-82 UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacte... 307 5e-82 UniRef50_A7H3V7 Putative site-specific recombinase, phage integr... 304 3e-81 UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE4... 303 9e-81 UniRef50_A6Q4N1 Site-specific recombinase, phage integrase famil... 300 5e-80 UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJ... 300 6e-80 UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=... 300 7e-80 UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM40... 300 8e-80 UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=... 300 8e-80 UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family... 299 2e-79 UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepI... 297 4e-79 UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphi... 297 5e-79 UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO 297 6e-79 UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobact... 296 1e-78 UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurel... 294 3e-78 UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria Rep... 293 7e-78 UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EV... 293 7e-78 UniRef50_C9M6R5 Site-specific recombinase, phage integrase famil... 292 1e-77 UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3... 291 3e-77 UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresis... 290 8e-77 UniRef50_D1Y3S1 Site-specific recombinase, phage integrase famil... 288 2e-76 UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphil... 288 3e-76 UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydroba... 287 4e-76 UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillu... 287 5e-76 UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=... 287 5e-76 UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter a... 287 6e-76 UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QA... 287 6e-76 UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family... 286 9e-76 UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus... 286 1e-75 UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=... 285 2e-75 UniRef50_B5J5X2 Site-specific recombinase, phage integrase famil... 285 2e-75 UniRef50_C8PFJ4 DNA integration/recombination/inversion protein ... 285 2e-75 UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integras... 285 3e-75 UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9... 285 3e-75 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 285 3e-75 UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ... 284 4e-75 UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family... 284 5e-75 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 284 5e-75 UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RK... 283 6e-75 UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111... 283 1e-74 UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU 283 1e-74 UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium ... 282 1e-74 UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholde... 282 2e-74 UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltic... 282 2e-74 UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 ... 281 4e-74 UniRef50_Q0BR52 DNA integration/recombination/inversion protein ... 280 6e-74 UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP... 280 7e-74 UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobac... 278 3e-73 UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus t... 277 6e-73 UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=... 276 1e-72 UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria ... 275 3e-72 UniRef50_B9R123 Site-specific recombinase, phage integrase famil... 275 3e-72 UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3... 273 8e-72 UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crun... 273 1e-71 UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus... 273 1e-71 UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family... 273 1e-71 UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12... 271 3e-71 UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter... 270 6e-71 UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio... 269 1e-70 UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia... 269 2e-70 UniRef50_B2TTV9 Site-specific recombinase, phage integrase famil... 268 2e-70 UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium ... 268 2e-70 UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaprot... 268 3e-70 UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae... 267 4e-70 UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuro... 267 4e-70 UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultu... 267 4e-70 UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacte... 267 5e-70 UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1... 266 7e-70 UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucle... 266 1e-69 UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis ... 265 2e-69 UniRef50_B0QT04 Prophage CP4-57-like integrase n=1 Tax=Haemophil... 265 3e-69 UniRef50_B5J7B6 Site-specific recombinase, phage integrase famil... 264 4e-69 UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella fer... 264 4e-69 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 263 6e-69 UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepI... 263 7e-69 UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas put... 263 8e-69 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 263 8e-69 UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium me... 263 1e-68 UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 263 1e-68 UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein ... 261 4e-68 UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovor... 261 4e-68 UniRef50_Q7MPT5 Site-specific recombinase, phage integrase famil... 260 6e-68 UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobial... 259 1e-67 UniRef50_B5J8B6 Site-specific recombinase, phage integrase famil... 259 1e-67 UniRef50_B9KC61 Site-specific recombinase, phage integrase famil... 258 3e-67 UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas inter... 258 3e-67 UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp... 257 5e-67 UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacteriu... 257 6e-67 UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacteriu... 257 6e-67 UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter l... 256 8e-67 UniRef50_B4WZP4 Site-specific recombinase, phage integrase famil... 256 8e-67 UniRef50_B3AX37 Site-specific recombinase, phage integrase famil... 256 1e-66 UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella si... 256 1e-66 UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria... 256 1e-66 UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobactera... 254 4e-66 UniRef50_A3JW30 Site-specfic recombinase, phage integrase family... 254 5e-66 UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1... 253 6e-66 UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteri... 253 8e-66 UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacter... 253 9e-66 UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobact... 253 1e-65 UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter... 253 1e-65 UniRef50_C6RGV6 Phage integrase n=3 Tax=Campylobacter RepID=C6RG... 253 1e-65 UniRef50_A5UG79 Prophage integrase n=1 Tax=Haemophilus influenza... 252 1e-65 UniRef50_D1R6D1 Putative uncharacterized protein n=1 Tax=Parachl... 252 2e-65 UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8... 252 2e-65 UniRef50_A7MTK6 Putative uncharacterized protein n=1 Tax=Vibrio ... 251 3e-65 UniRef50_C6E138 Integrase family protein n=1 Tax=Geobacter sp. M... 248 4e-64 UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducen... 247 4e-64 UniRef50_C3MF92 Phage integrase-like protein contains catalytic ... 247 4e-64 UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6... 247 7e-64 UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodoba... 246 1e-63 UniRef50_Q1YTS1 Putative phage integrase n=1 Tax=gamma proteobac... 246 2e-63 UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadec... 245 2e-63 UniRef50_A4AB16 Phage integrase n=1 Tax=Congregibacter litoralis... 245 2e-63 UniRef50_B4W6V7 Site-specific recombinase, phage integrase famil... 244 6e-63 UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria ... 242 1e-62 UniRef50_D2QCK7 Integrase family protein n=1 Tax=Spirosoma lingu... 242 2e-62 Sequences not found previously or not previously below threshold: >UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteobacteria RepID=INTA_ECOLI Length = 413 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 413/413 (100%), Positives = 413/413 (100%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF Sbjct: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT Sbjct: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE Sbjct: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM Sbjct: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG Sbjct: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA Sbjct: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG Sbjct: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 >UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepID=C9NQJ4_9VIBR Length = 415 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 217/413 (52%), Positives = 296/413 (71%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ T LT T+IK++KPKD +Y L+DGDGL L IK +GSK W YYRP ++R S Sbjct: 1 MAKTTVKLTPTKIKSSKPKDKEYNLFDGDGLRLRIKPNGSKHWILNYYRPSNRKRANLSL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++ARK+ E+K LLA+ IDPQE +K + +TF+ V +W+ +KK Sbjct: 61 GKYPDLSLANARKMTLEAKELLAQGIDPQEERKRHQLEQKANHEHTFINVTTKWFEIKKD 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 VT DYA DIWRSLE IFP + D+ + +I A +++ ++P++A+G+LETV+RL QR+NE Sbjct: 121 DVTPDYAVDIWRSLELHIFPQLSDVPVRDITAPQVIELLKPIEAKGSLETVKRLAQRLNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA N GL+ A P I AF+KP+K+NM ++ P +LP+LM + ASI +TRCL Sbjct: 181 VMNYATNCGLVQANPLTGIKAAFKKPKKENMAALTPAELPELMGAIANASIKRTTRCLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRP+EA+ ARW+EID++ W IP RMK R+H +PL++ L +LE++KP+SG Sbjct: 241 WQLHTMTRPSEASGARWEEIDWDEKVWTIPPERMKKRREHRIPLTEQMLELLEVIKPISG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 REFIFPS P +P NSQT N ALKR G G LVSHGLRS+AST LNE+GF PD+IEAA Sbjct: 301 HREFIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFEPDLIEAA 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 LAH D N+VR AYNR+DYLE+RRPMM WW+ ++ A GS+ +T + +++++ Sbjct: 361 LAHADDNQVRSAYNRTDYLERRRPMMCWWSGHIEEAAKGSLSVTGMKQLKVIN 413 >UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobacteria RepID=B7MX56_ECO81 Length = 419 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 225/413 (54%), Positives = 294/413 (71%), Gaps = 1/413 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MARKT PLT +IKAA+P +Y L DG GL LL+K SGSKLW+F YYRP K+R SF Sbjct: 7 MARKTHPLTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSF 66 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-K 119 G+ VSL+DARK R+E + L++ DPQ+H++++ + NTF VA W+ VK Sbjct: 67 GSLEDVSLADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKIS 126 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 ++ + DIWRSL++ +FP IG+ I + A V+ + P++ RG LET++R+ QR+N Sbjct: 127 QNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVN 186 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 EVM YA N+GLIDA P++N+ KAF P KK+MP+IRP+QLP+LM + ++ TR L Sbjct: 187 EVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLI 246 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 WQLLT+TRPAEA+ RWDEI+ +A +W IPA RMKM RDH +PLS A+A+LE MKP+S Sbjct: 247 EWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPIS 306 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 R ++FPS P QPMNSQT NAAL+R G GVLVSHGLR+I STA NEEGF PDVIEA Sbjct: 307 HHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEA 366 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 ALAHVD NEVRRAYNRS+Y+E+R +M+WW + V+AA +G + + IR V Sbjct: 367 ALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGEFVEAAATGVTLASGKRGIRAV 419 >UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MWW9_VIBHB Length = 410 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 195/404 (48%), Positives = 274/404 (67%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K +PL+ T++K K + ++ + DGDGL L I +G+K W F Y P TK+R Sbjct: 1 MAKKIRPLSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+ AR+ R + L+AK IDP+ H+ Q + A +T L VA+ W+ +K+ Sbjct: 61 GKYPDVSLATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQH 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SV+ DYADDIWRSLE IFP +G + + EI A T++ ++P++A+G+LETV+R+CQR+NE Sbjct: 121 SVSSDYADDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA N G ++A P NI + F+KP+ K+M +I P L L+ +M +I + TRC F Sbjct: 181 VMTYAVNCGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +QL T+TRP+E +A W+EIDF W IP +MKM RDH +PLSD + +L+ MKP+S Sbjct: 241 FQLHTLTRPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISF 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +++FPS K MNSQ+VNAA+KRAG G LVSHG+RSI STALNE+GF D IE Sbjct: 301 EHKYVFPSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELC 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 LAHVDKN +R YN ++YLE+RR +MQWW++ + +A + +L Sbjct: 361 LAHVDKNTIRDIYNNAEYLEERRNVMQWWSEYIISASKNTFILA 404 >UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobacillus minor 202 RepID=C8KXV2_9PAST Length = 406 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 185/406 (45%), Positives = 255/406 (62%), Gaps = 3/406 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K PL DTEIK AKP+D Y + DG GL L++ +GSK W+F YYRP++K+R K + Sbjct: 1 MAKKVHPLVDTEIKKAKPEDKPYTMTDGQGLFLIVSPTGSKSWRFNYYRPISKKRAKIAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA++LS AR LR E K LLA IDPQEH K+ + K NT +AE+W K+T Sbjct: 61 GMYPAITLSKARALRDEYKHLLANGIDPQEHCKQLELQKLQFKQNTLFAIAEKWKQKKET 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V E WR LE+ IFP +GD+ I+EI L ++PV RG T + Q +NE Sbjct: 121 EVKEKTLKPRWRMLEKYIFPELGDLPISEISPLRLSNTIRPVFDRGIANTGLVIIQMVNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 +M++A N G+I+ N+ F K K+ P+IRP++LP+ M +R +++ + + L Sbjct: 181 IMVFAVNLGIIEFNKCSNVASTFNVKKTTKHQPTIRPEKLPEFMSALRDSAVDLVVKLLI 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 + LLT+ RP EAA A+WDEI+F+ + W IPA RMKM + TVPLS A+ +L +K ++ Sbjct: 241 EFSLLTMVRPNEAANAKWDEINFDDALWHIPAERMKMKKAFTVPLSSQAIKLLNKLKQIT 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE--GFPPDVI 357 G FIF S P +PM+S T NAA++R G G L SHGLRSIAST L+E+ ++I Sbjct: 301 GRSRFIFQSPRAPQKPMSSVTANAAIRRIGYNGKLTSHGLRSIASTYLSEKFIDINVEII 360 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 EA L+H KN +R AYNRS YLEQR+ +M W V+ + S+ L Sbjct: 361 EACLSHQGKNPIRNAYNRSTYLEQRKLLMADWGQFVEESMKSSLDL 406 >UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophilus influenzae RepID=Q4QNN7_HAEI8 Length = 403 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 183/403 (45%), Positives = 250/403 (62%), Gaps = 2/403 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K KPL DTEIK AK + Y L DG GL L+I +GSK W+F YYRP+TK+R K S Sbjct: 1 MAKKVKPLVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA++LS AR+LR + + LLA IDPQE+ K+ + + NTF ++ +W K + Sbjct: 61 GLYPAITLSKARELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVS 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + WR+LE+ FP +GD I EI L V P+ RG T + + +NE Sbjct: 121 EIKSVTLKSRWRTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N G+I+ +N+ KAF + + P+IRP++LP+ M +R + I + + L Sbjct: 181 IMNFAVNKGIIEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + LLTITRP+EAA A+W+EIDF S W IPA RMKM + T+PLS L IL +K +SG Sbjct: 241 FSLLTITRPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE--EGFPPDVIE 358 FIF S+ P +P++S + NAA+KR G L SHGLRSIAST L+E +++E Sbjct: 301 RSRFIFQSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 A L+H KN+VR AYNRS YLEQR+P+M W D V+ SI Sbjct: 361 ACLSHQSKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMKKSI 403 >UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX Length = 394 Score = 416 bits (1068), Expect = e-115, Method: Composition-based stats. Identities = 153/391 (39%), Positives = 227/391 (58%), Gaps = 2/391 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD ++K AKPKD Y+L DG G+ LLI ++GSK W+ +Y + S G YP V+ Sbjct: 3 LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR+ R+E++ LLA DP E +KE+ Q + NTF +A W K + Y Sbjct: 61 LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+I + E+DIFP IG I EIK L++A++ ++ RGALE +R++ QR EV YA Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 TG D P+ ++ A P+K + P + ++LP ++ + + S+ T+ +LT Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E ARW++IDF W+IPA MKM R H VPLS+ + + + ++P+S +F Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI 300 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 R P +P++ +++N ++ G G L HG R ST L+E+GF IE LAHVDKN Sbjct: 301 GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +R YN + YL+ RR MMQW+AD + + S Sbjct: 361 SIRGTYNHALYLDGRREMMQWYADYIDSLSS 391 >UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus parasuis SH0165 RepID=B8F555_HAEPS Length = 405 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 182/405 (44%), Positives = 249/405 (61%), Gaps = 2/405 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K L DTEIK AK KD Y L DG GL LL+ +GSK W+F YY+P+TK+RTK + Sbjct: 1 MAKKVHQLVDTEIKKAKAKDKPYTLTDGGGLFLLVSITGSKSWRFNYYQPITKKRTKMAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+LS AR LR E K LLA DIDPQ++ K + + + NTFL +AE+W K Sbjct: 61 GMYPTVNLSKARALRDEYKKLLADDIDPQQYIKNKQQEKLQETQNTFLAIAEQWKQKKSA 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + WR LE FP +G+ISIT IK + + V P+ RG T L Q INE Sbjct: 121 EIKPATLKNHWRRLELYAFPTLGNISITMIKPLQVTELVTPLFLRGVNSTGVLLLQTINE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N G+I+ +I F K + ++ P+IRP+ LP+ +R + + + L Sbjct: 181 IMRFAVNRGIIEFNKCADIADTFVKSKSEHHPTIRPEHLPEFFAALRNSHADLIIKSLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + LLTI RP+EAA A+W EIDF S W IPA RMKM + T+PLS A+ IL+ ++ ++G Sbjct: 241 FSLLTIARPSEAANAKWAEIDFEQSLWNIPAERMKMKQPFTIPLSIQAVKILKKLQVITG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE--GFPPDVIE 358 +IF S KP+QP+ Q N +K+ G G L SHGLRSIA+T L+E+ ++IE Sbjct: 301 RSLYIFQSIKKPSQPIGKQIANNTIKQMGYKGKLTSHGLRSIANTYLSEKFIDLNVEIIE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 A L+H +N+VR AYNRS YLEQR+P+M W V+ + S+ L Sbjct: 361 ACLSHKSQNQVRNAYNRSTYLEQRKPLMNDWGQFVEESMKSSLDL 405 >UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammaproteobacteria RepID=A0KW55_SHESA Length = 411 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 176/408 (43%), Positives = 261/408 (63%), Gaps = 1/408 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R T LT + AK + Y+L DG L L ++++G K W+FRY RP T + T Sbjct: 1 MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YP VSL++AR E++ LA+ IDPQ + E + T +A+ W + K+ Sbjct: 60 GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 S+ + WR LE FP +G I+I+ + A + A++P++ +G LETV+R Q +NE Sbjct: 120 SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M ++ N+G I A P I + F K + +++ +++P +L +L+ T+ A++ ++TRCL Sbjct: 180 IMNFSVNSGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIE 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRP EAA ARW+EIDF+A W IP +RMKMNR+H +PL++ L ILE +KP+S Sbjct: 240 WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISE 299 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +F+FPS P + + +T+N AL R GL G HGLRS+AST LNE+GF DVIEAA Sbjct: 300 QSQFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA 359 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 LAHVDKN++R AYNR+ YLE+R +M+WW++ + A GS+ +T S+ Sbjct: 360 LAHVDKNQIRSAYNRTTYLERRTKLMEWWSNHIATAAVGSLSVTAGSR 407 >UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L516_9DELT Length = 417 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 144/410 (35%), Positives = 226/410 (55%), Gaps = 10/410 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +KT PLTD I+ AK D +++DG GL L + +G KLW+F+Y + + Sbjct: 1 MPKKTIPLTDVAIRNAKAADKPVKMFDGAGLFLQVTPTGGKLWRFKYL--FDGKEKLLAL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA---KTNTFLLVAERWWNV 117 G +P V L AR+ R E++ L+A+ +DP E +K+ +++ NTF +VA W Sbjct: 59 GKWPDVGLKMARQRRDEARALVAQGVDPSEKRKQDRADAEGQAVENANTFAVVARDWHAK 118 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + +E +A I +E+ +FP G+I IT ++A ++ ++ ++ +G ET +RL Q Sbjct: 119 QVKVWSEGHAAKILARMEQHLFPVFGNIPITTLRAPAILPTLRDIEDKGNHETAKRLRQY 178 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTR 236 V +A +TG+ + ++ A + N P+I P + QL+ + S T Sbjct: 179 CEAVFTFAISTGIAERNVGADLRGALAPCRATNRPAIIDPKGVAQLLRAIDGYQGSPVTV 238 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNAS---EWKIPAARMKMNRDHTVPLSDGALAILE 293 L RP E +A W EID +A+ W IPA +MKM RDH VPLS A+ I+ Sbjct: 239 AALRLAPLVFVRPGELRQAEWSEIDLDAADGPRWSIPAEKMKMRRDHVVPLSKQAVDIIT 298 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGF 352 + L+G ++FP + M++ +NAAL+R G G + +HG R++AST LNE G+ Sbjct: 299 EIYSLTGQDRYLFPCNRTKGRCMSNMALNAALRRMGYEQGEMCAHGFRAMASTLLNELGW 358 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 D+IE LAH ++N +R AYNR++YL +RR MMQ WAD + +G+ V Sbjct: 359 NSDLIERQLAHAERNSIRAAYNRAEYLPERRRMMQAWADYLDMLKAGAKV 408 >UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromonadales RepID=A1SRI6_PSYIN Length = 416 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 167/413 (40%), Positives = 246/413 (59%), Gaps = 1/413 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ T PL+DT+I+ K D L DG GL L IK +GSKLWQ R+ +P+ K+ F Sbjct: 1 MAK-TTPLSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGF 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 GAYPA+SL++ARKLR + LLA+ I+P+ + +++ + NTF +V W +K + Sbjct: 60 GAYPAISLANARKLREAANELLAQGINPKAQRDSEIKEKELILNNTFEMVTAAWIKLKAS 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V D I +L I P IG ITEI A ++A++P++A+G E + R CQ +N+ Sbjct: 120 EVKPDSLKTISTTLTNHILPRIGKCPITEITAPMAIEALRPIEAKGNHEVIARACQYLNQ 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M YA N G+I + P I F + N P ++P++LPQL+ + TA+I TR L + Sbjct: 180 IMRYATNLGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIATANIKKITRNLIL 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRPAE A A+W+EID+ + W IP R+K H +PL+ LAILE K +SG Sbjct: 240 WQLHTMTRPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISG 299 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 ++IFP+ PN N + N A KR G G +HGLR +A T L+++G + EA Sbjct: 300 NSDYIFPADRNPNAHANKASANMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEAC 359 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 L+H N V ++YN S YL QR +M WW++ ++ A G+I + +++VG Sbjct: 360 LSHKVGNSVSQSYNHSTYLNQRIKIMAWWSNYIEEASYGNISMAGSKGVKVVG 412 >UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteriaceae RepID=B7N6K6_ECOLU Length = 415 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 194/400 (48%), Positives = 270/400 (67%), Gaps = 3/400 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++ KPLT+ EI AKP+ DY+L DG+GL LL+K+SG K W F YY P+TK+RTK S Sbjct: 1 MPKQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK- 119 G YP V+L+ AR+ R + + LL + IDP++H + T VAE+W KK Sbjct: 61 GPYPVVTLAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRLQNECTLEKVAEQWLKEKKR 120 Query: 120 -TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + ++ED+A D+WRSLE +FP++G +TEI+ L + + P++ +G LET+RR+ R+ Sbjct: 121 TSDLSEDHAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL 180 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 NE+ +A + LI+ P+ N+ F+KP+K+NMP++ P +L +LM ++ ASI TRCL Sbjct: 181 NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 W+LLT RP EA ARW +ID +EW+IP MKMNR HTVPLS AL +L++M+P+ Sbjct: 241 IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV 300 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 S R ++FPS KP + M+ QT NAAL R G GG LV+HG+RSIA TA FP +V+E Sbjct: 301 SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLE 359 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +ALAH ++E+ AYNRSDYLEQRRP+MQWW + V AA Sbjct: 360 SALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARR 399 >UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4F8_HAES1 Length = 413 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 175/397 (44%), Positives = 252/397 (63%), Gaps = 2/397 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR+ LT+T+I AKPKD DY L DG GL LL+KS+GSKLW+F YY L K+R S Sbjct: 1 MARQIIQLTNTKILNAKPKDKDYTLSDGQGLYLLVKSNGSKLWRFNYYDLL-KKRKLISL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YP SL DAR R E + LLAKDI+PQ++ +Q + + NT + VA+ W +K + Sbjct: 60 GSYPETSLLDARTKRDEYRALLAKDIEPQDYIFKQKEQAIFNQCNTLIGVAKDWREMKSS 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V D D WR LE +FP +G++ I++I A +Q + E ++++ + +NE Sbjct: 120 KVEADTMKDQWRLLELHLFPHLGNMPISDITAPFTRMKLQKLADDKKFEMLKKVIRGLNE 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N GLI P+ N+ + F + ++ PSI PD+LP+ + ++ A+I + TRCL Sbjct: 180 IMRFAVNAGLIQFNPTANLQELFPSGEVQHRPSIHPDKLPKFLESVNKANIQLQTRCLLE 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-MNRDHTVPLSDGALAILEMMKPLS 299 WQLLT+ RP+EAA W EIDF W IP RMK R H VPLS A+ IL +M+P++ Sbjct: 240 WQLLTMVRPSEAAGTMWREIDFENKTWLIPKDRMKGKKRSHLVPLSQQAINILNIMRPIT 299 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 G +F+FP M+S+T+N AL++ G G+L +HG RSIASTALNE F ++IEA Sbjct: 300 GNCDFVFPKNGDLTTNMSSETINKALRKMGYQGILCAHGFRSIASTALNENEFNVEIIEA 359 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 L+HV ++VR AY+RS Y +Q+R ++WW + V+ + Sbjct: 360 LLSHVKGDKVRTAYDRSTYEKQKRQYIEWWGNFVEKS 396 >UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR55_9DELT Length = 401 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 146/395 (36%), Positives = 231/395 (58%), Gaps = 8/395 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD ++K KP Y++ D DG+ L + +G KLW+F+Y + + G YP VS Sbjct: 3 LTDVQVKGLKPGSTKYRVKDKDGMYLEVTPAGGKLWRFKYR--FNGKNKLLALGKYPDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ + ++ +A+ DP +K + K NTF + + WW KK++ T +A Sbjct: 61 LAKAREKLSIARQQIAEGKDPAYIKKIEKAE----KENTFKAITDEWWRAKKSTWTPGHA 116 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + ++R LE D+ P + D I EI A +++ ++ +ARG +T RL Q + + I+A Sbjct: 117 EKVYRRLEIDVLPYLKDRPIKEITAREILEVLKKAEARGVTDTAYRLAQMCSNIFIFALA 176 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G + P+ +I KA K N P+I PD++ +L+ + + S + C +L Sbjct: 177 SGRAEHNPAADISKALTAHPKTNRPAITEPDEIKELLLAIDGFTGSYTVLCALKIAILVF 236 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E +A W EI+F+ + W +P+ RMKM R+H VPLS A+ IL+ + PL+G ++F Sbjct: 237 VRPGELRQASWAEINFDEALWYVPSQRMKMKREHLVPLSGQAVKILKDIHPLTGAGHYVF 296 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 PS ++PM+ T+NAAL+R G L +HG R++AST L+E G+P D+IE LAHVD Sbjct: 297 PSIRTNSRPMSENTLNAALRRLGYPQEKLCAHGFRTMASTRLHEMGWPSDIIEFQLAHVD 356 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 +N++R YNR++YL+QR MMQ WAD + +G Sbjct: 357 QNKIRGIYNRAEYLDQRTKMMQAWADYLDDLKTGK 391 >UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ08_9PROT Length = 418 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 145/395 (36%), Positives = 223/395 (56%), Gaps = 4/395 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTDT IK AKP+ Y++ DG G+ + +K +G+K W+ Y ++ + G YP V Sbjct: 2 KLTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYR--FADKQKTLALGVYPDV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +L+DAR R E++ LLA DP ++ Q + ++ A +N+F L+A + ++K + ++ Sbjct: 60 TLADARDRRNEARKLLANGADPGAVKQSQKKQAKIAASNSFELIAREFHSLKTPMWSTNH 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A D ++LER+IFP G+ I+EI A ++ A++ +++R A E R+ QR+ V YA Sbjct: 120 AADWIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEVAARVLQRVRAVCAYAI 179 Query: 187 NTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG P+ I A +P+ K+ ++ +LP + + T+ +LT Sbjct: 180 ATGRARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLMLT 239 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E A+W E D +A WKIPA RMK H VPL+ A+ IL + PL+G E + Sbjct: 240 FVRTGEVRGAKWCEFDLDAKLWKIPAERMKSREPHIVPLAKQAIEILGELHPLTGHGEHL 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHV 364 FP+R + ++ TV ++R G G + HG R+IAST LN G PDVIEA LAH Sbjct: 300 FPNRTGNGKVISENTVLKVIERLGYKGRMTGHGFRTIASTYLNGVGMIRPDVIEAQLAHT 359 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 + N R AYNR++Y+E R MMQ+WAD + A ++G Sbjct: 360 EANATRAAYNRANYMEYRAAMMQFWADTLDAMEAG 394 >UniRef50_Q2T016 Site-specific recombinase, phage integrase family n=30 Tax=Bacteria RepID=Q2T016_BURTA Length = 438 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 144/401 (35%), Positives = 220/401 (54%), Gaps = 6/401 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++T PLTD +++ AKP + Y+L DG GL L + +GS+ W+ +Y + SF Sbjct: 41 MPKQTDPLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYR--FDGKEKLASF 98 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+ AR+ ++ LLA DP E ++E R +++F VA W+ +K Sbjct: 99 GVYPEVSLAQARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKD 158 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 TE YA+ + SLE D FP IG + +I+A +++ V+ ++ARG ET +R+ QR Sbjct: 159 GWTEVYANKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRA 218 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQ---KKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 V Y TG P+ +I + K+M ++P ++PQLM + S T+ Sbjct: 219 VFQYGIMTGRCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQL 278 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + LT TR E A WDE D A+EW+IP RMKM H VPLS AL +L ++ Sbjct: 279 ALRFMALTFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRE 338 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 L+G + +F S ++ +++ T+ AL R G + HG R +A+T L E G+ DV+ Sbjct: 339 LNGNQRLVFYS-VQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVV 397 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + LAH ++N+V AY ++YL +RR MMQ WAD + + Sbjct: 398 DRQLAHAERNQVTAAYVHAEYLPERRKMMQHWADYLTQTAN 438 >UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepID=Q5E028_VIBF1 Length = 399 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 166/399 (41%), Positives = 254/399 (63%), Gaps = 2/399 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR+ LTD +IK+A P ++ L DG+GL L ++ +G+K WQF++ P+T++ K + Sbjct: 1 MARQVIRLTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDPVTRKIQKIAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++AR E + LLA+ I+P+ ++ + ++ +T+TF++VAE+W+ KK Sbjct: 61 GPYPELSLANARSKTTEYRTLLAQKINPKSFEQSKELEAKRVQTSTFIVVAEQWFERKKE 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +V+ ++ WR+LE+ IFP + I + I A + ++P++ G TV+R+CQ +N+ Sbjct: 121 TVSPAHSYREWRTLEKYIFPHMSKIPVATITAVETIDVLRPLEKEGKYSTVKRICQSLNQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS-ISMSTRCLF 239 +M Y+ N GLI A P I K F K +MP+IRP+QLP + + + S I T+ L Sbjct: 181 IMDYSVNHGLIHANPLAKIIKVFRKNTVLHMPTIRPEQLPDFLKRLHSCSTIQTKTKLLI 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +WQL T+TRP EAA RW +ID W IPA MK ++H +PL+ A+ IL ++ S Sbjct: 241 LWQLHTMTRPKEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIRLQS 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKR-AGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 +++FP N ++ T NAA+KR GL LV+HGLR+IASTAL+E GF +IE Sbjct: 301 KRCDYVFPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALHEYGFDSLLIE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 A L+H D+NEVR +YNRSDYLEQR+ +M WW++ + A Sbjct: 361 ACLSHADQNEVRASYNRSDYLEQRKEIMCWWSNYIDEAA 399 >UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammaproteobacteria RepID=A7ZQ61_ECO24 Length = 436 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 194/407 (47%), Positives = 263/407 (64%), Gaps = 6/407 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKS---SGSKLWQFRYYRPLTKQRTK 57 MA+ K LTDTEIK+ KP + + L+DGDGL L I G K W FRY P+TK+RTK Sbjct: 28 MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK 87 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW-- 115 S G YP ++L+ AR LR E LL IDPQ H ++ ++A +TF VA++W Sbjct: 88 VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE 147 Query: 116 NVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 VK + +++D+A+DIWRSLER+IF +GD I EI+ L + ++P++ RG LET+RR+ Sbjct: 148 KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII 207 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 R+NE+ YA LI+ P+ N+G+ F KP+K+NMP++ P +LP+ + + ASI + T Sbjct: 208 SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET 267 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 R L WQLLT RP EA RW +ID W IPA MKM + H VPLS AL +L++M Sbjct: 268 RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM 327 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPP 354 K +SG RE++FPS P M+ QT NAA+ R G GG LV+HG+RSIA TA E G F Sbjct: 328 KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT 387 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 DV+EAALAH K+E+ AYNR++YL +R +MQWW+D V + I Sbjct: 388 DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQKCKVI 434 >UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellaceae RepID=B3GXJ8_ACTP7 Length = 406 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 159/400 (39%), Positives = 239/400 (59%), Gaps = 4/400 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + KPL +TE++ AK K A+Y L DG GL L +K S K W F Y P+TK+RT + Sbjct: 1 MPKIVKPLNNTEVEKAKIKPAEYSLSDGYGLYLRVKPSKVKTWIFNYQEPITKRRTNLTI 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA+S+++AR +R E + LLAK IDP+ +++EQ R E NTFL +A+ W + Sbjct: 61 GDYPAISIAEARTIREEYRALLAKGIDPKTNKEEQERQQAEQNDNTFLKLAQLWKEKRSK 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V W LE +FP +G +I +I L+KAV+P+ +G +T+ R+ N+ Sbjct: 121 EVEPLTMAKNWARLENHLFPVLGHYAIDKITPPILIKAVKPLNDKGINDTLHRILNLANQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 ++ Y G++ N+ A+ K + + P+I+P +LP+L+ + ++ T+ LF Sbjct: 181 ILNYGVTVGVLPFNACQNVSDAYHKETQTHHPAIKPSELPKLIADFQNSNRDFLTKVLFK 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----DHTVPLSDGALAILEMMK 296 WQLL++ RPAEA W EIDF+ + W IPA +MK R HTVPLS L ILE ++ Sbjct: 241 WQLLSMVRPAEAVSIEWAEIDFDKNLWFIPAEKMKKTRKGQFPHTVPLSSQMLKILESLR 300 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 P++G +F+FP +PN+ M+ +T+ AL++ G G+ SHGLRSIA T L ++ Sbjct: 301 PITGVNKFVFPHYSQPNKSMSKETITNALRKIGYRGIQDSHGLRSIARTYLEDQAVDFRA 360 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 E+ LAH NE +AYNR++Y+E RRP+MQ W D ++ Sbjct: 361 AESCLAHRIGNETSQAYNRAEYIELRRPLMQLWGDYCESC 400 >UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria RepID=A4JAY4_BURVG Length = 405 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 148/401 (36%), Positives = 226/401 (56%), Gaps = 3/401 (0%) Query: 4 KTKPLTDTEIKAAKPKD-ADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 KTKPLTD + + A+ + +L+DG GL L ++SSGSK W+ +Y + +FG Sbjct: 2 KTKPLTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYR--FNGKENLLTFGD 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YPA SL+DAR R E+K LLA+ +P + + + A NTF VA W+ ++ + Sbjct: 60 YPATSLADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATW 119 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + +A+ + + L+R++FP IG I+ I A L+ V+ ++ R A ET R+ Q +V Sbjct: 120 SASHANRVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVF 179 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 YA T + PS ++ A + K+M + +LP+L+ ++ + TR + Sbjct: 180 RYAVATSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFL 239 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LT R E +A W EID EW+IPA +MKM R H VPL++ A+A+L ++ L+G R Sbjct: 240 ALTFVRTIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGHR 299 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++FP+ +P Q M+ T+ AL R G + HG R +AST LNE+GF D IE LA Sbjct: 300 RWLFPNSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLA 359 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 H +++ VR AYN ++YL +R MMQWWAD + I+ Sbjct: 360 HSEQDGVRAAYNHAEYLSERHRMMQWWADYLDKQSGAQIIP 400 >UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_HAES1 Length = 418 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 180/417 (43%), Positives = 270/417 (64%), Gaps = 8/417 (1%) Query: 1 MARKTKPLTDTEIKAAKPKD------ADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ 54 M R T L + +I AAKPK D +L DG+GL LL+K++GSKLW+F YY+PLTK+ Sbjct: 1 MTRPTNLLNNRKIDAAKPKADEQGNLTDNKLQDGNGLYLLVKATGSKLWRFNYYKPLTKK 60 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 RT+ S GAYP VSL+ AR+LR + + LLA+DIDP EH++ + + NT+ VA W Sbjct: 61 RTEMSLGAYPDVSLAQARELRNQYRSLLAQDIDPNEHRQNVKQAKLDEINNTYEAVAWAW 120 Query: 115 WNVK--KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 + + K + +E Y D+ ++R + P G + I++I A +KA + Q G LE ++ Sbjct: 121 FEYRQTKKNFSEGYKKDVASLIKRCLLPHFGSLPISQITAPMALKAFKQYQDEGTLEKLK 180 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASIS 232 R Q+ NE+M +A + LI P+ NI K F+ P ++ +I+P+ LP+ M+T+ A I+ Sbjct: 181 RTIQKHNEIMNFALHRDLISFNPTANISKEFDSPTVEHFKTIQPEDLPEFMYTLNNAQIN 240 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 + TR L +WQLLT+TRP EAA+AR+++ID + W IPA MK H + LS A+A+L Sbjct: 241 LRTRYLILWQLLTMTRPNEAAKARYEDIDEKSRLWTIPAENMKRGIAHKITLSRQAMALL 300 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 +K LSGG+ ++FP+ P +N+QT NAA+KR G G LV+HGLRSIAST LNE+G+ Sbjct: 301 REIKKLSGGKTYLFPNVKYPQTHVNTQTANAAIKRMGYQGKLVAHGLRSIASTYLNEKGY 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 ++IE AL+H++ + ++ AY+R + LEQR ++Q WAD V+ G++ HL ++ Sbjct: 361 NSELIEVALSHINSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGALPQYHLKRV 417 >UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root RepID=A1BGX1_CHLPD Length = 419 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 142/404 (35%), Positives = 222/404 (54%), Gaps = 9/404 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++ PL+D ++ AKP + DY+L DG GL LL+ +SG KLW+F+Y ++ + Sbjct: 1 MPKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYR--FDGKQKLLAL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++ARK R E++ LLA + DP E +K + ++F LVA W+ Sbjct: 59 GQYPEISLANARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDP 118 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + +A + LE+D+FPAIG ++EI A + + ++ARGA+ET R+ + Sbjct: 119 VWSPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQ 178 Query: 181 VMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRC 237 V YA TG ++ PS + + F K + ++ +I P +L L+ + + + Sbjct: 179 VFRYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKS 238 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 L RP E W +IDF + W IPA RMKM + H VPLS +L+IL+ + P Sbjct: 239 ALQLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHP 298 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE-EGFPPD 355 +G ++F R +PM++ ++NAAL+ G + HG R+ A T L+E GF D Sbjct: 299 ATGHGRYVFTGRGS--RPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVD 356 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 +IE LAH ++ RAYNR+ +L+ RR MMQ WAD + + +G Sbjct: 357 LIEHQLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAG 400 >UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4SSF4_AERS4 Length = 404 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 150/405 (37%), Positives = 237/405 (58%), Gaps = 5/405 (1%) Query: 7 PLTDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 PLTD + AK +L D GL LL+ SG K W+ +Y + K + G YP Sbjct: 2 PLTDITARQAKWSGKPNGDKLADEKGLFLLVNKSG-KYWKLKYRH--GGKEKKLALGVYP 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 VSL +AR R E++ ++A+ IDP +K+ S+ N+ ++A W + + Sbjct: 59 EVSLREARAKRDEARRVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSP 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A + SLE D+FP +G + ITE+ A +++A++ V+ RGA ET R+ QR++ +M Y Sbjct: 119 GHATRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRY 178 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 A TG P+ ++ A + ++++ P++ +LP+ + ++ +TR +L Sbjct: 179 AIQTGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLML 238 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T+TRP E ARWDE D +EW+IPAARMKM +H VPLS ALA+L+ + L+G E Sbjct: 239 TMTRPGEVRFARWDEFDMERAEWRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHCEL 298 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 +FPS K PM+ T++ A+ R G G+ HG R++AST LNEEGF PDVIE LAH Sbjct: 299 LFPSERKLTNPMSENTLSYAMGRMGYKGIATPHGFRALASTTLNEEGFDPDVIERQLAHA 358 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 ++N+VR AY+R++YL+ RR ++QW AD + +++ + +++ Sbjct: 359 ERNKVRAAYHRAEYLDDRRKLLQWLADFYDSQRGSNVLPVNFNRV 403 >UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2J0_9DELT Length = 420 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 139/408 (34%), Positives = 205/408 (50%), Gaps = 17/408 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ--RTKQSFGAYPA 65 LTD +++ K +D +L+DG GL L + SG K W+F+Y P + + S G YP Sbjct: 3 LTDAQVRNVKAEDKTRRLFDGGGLYLEVAPSGGKWWRFKYRFPGQGKIQEKRLSLGTYPG 62 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L +AR R E + +A+ IDP ++ + A +F VA W T Sbjct: 63 VGLKEARAKRDEMRRQIAQGIDPANLRRSTRGSGALA--GSFEAVARLWHRNNSTDWAPS 120 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 ++ + R LE +FP +G+ + +I A L+ ++ ++ G ET RR+ +V YA Sbjct: 121 HSTRLIRRLEAHVFPYLGNRPVGDITAPDLMNVLERIKNSGHTETARRIQTICGQVFRYA 180 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 G + PS + K KNM +I P ++ +L+ + + RC L Sbjct: 181 VQKGFAEYDPSSALKGCLGKTTAKNMATITEPAEVGRLLQAIDEYPGTQVVRCALQLAPL 240 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD----------HTVPLSDGALAILEM 294 R E ARWDE D EWKIP RMKM +D H VPL+ A+ ILE Sbjct: 241 FFVRSGELRNARWDEFDLVNREWKIPVERMKMRQDEKRARQGQVGHIVPLATQAVKILEE 300 Query: 295 -MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGF 352 ++PL+G +FP ++ ++ T+ AL+R G G + HGLR +AST L+ GF Sbjct: 301 ELRPLTGRCALVFPGLRSRDRAISDATLTNALRRMGYTGDEMTIHGLRHMASTLLHGLGF 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 VIE LAH D+N +R YN++DYLE+RR MMQ WAD + +G Sbjct: 361 QSLVIERQLAHKDRNRIRGVYNQADYLEERRRMMQSWADYLGQLKAGK 408 >UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophilus RepID=Q4QL03_HAEI8 Length = 419 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 162/413 (39%), Positives = 254/413 (61%), Gaps = 10/413 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA KPL+ TEI AKPK+ DY L DG GL LL+K +GSK+W+F+YY+P++K+RT S Sbjct: 5 MAVLVKPLSITEINNAKPKEKDYSLSDGQGLFLLVKMNGSKIWRFQYYKPISKKRTLISL 64 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL DAR++R + LLAK+IDPQ+++ +Q + + + + T + + W +KK Sbjct: 65 GVYPEISLKDAREIRDLYRSLLAKNIDPQDYRLQQEQKAIQERQFTLSEMGKEWLYLKKN 124 Query: 121 SV-----TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 V E DI + LER +F +G SI+EI A ++ ++P++ G L+T+ R+ Sbjct: 125 EVDTGRLKEVTFIDIGKRLERHLFKVLGHYSISEISAPLAIEKLKPLERAGKLDTLHRII 184 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 +N++MIY+ N G+I+ + +IG+ F +P +N P+IRP+QLP+L ++ +++ + T Sbjct: 185 GYLNQIMIYSVNRGVINYNATADIGRVFIRPIAENNPTIRPEQLPKLFEDLQNSTLEIET 244 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN----RDHTVPLSDGALAI 291 RC LLT R + W+ +DF S IP +MK +D +PLS A+ I Sbjct: 245 RCALELLLLTAGRAGAITQLEWENVDFENSLLNIPKEKMKGRQGKVQDFILPLSKQAVTI 304 Query: 292 LEMMKPLS-GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 L +++ L+ +F+FPS+ P QP++ +T N AL R G +L +HGLRS+ STA+NE Sbjct: 305 LRLLQKLNRCNSKFVFPSKKNPRQPISKETPNKALGRIGYRNILTAHGLRSVFSTAMNEA 364 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 F ++IE LAH + + VR YN++ Y+ QR MQWW + V+ A G ++ Sbjct: 365 EFNSEIIEVCLAHFEYSSVRGTYNKAKYMPQRIEYMQWWGNFVEEASDGKALM 417 >UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P090_AZOSE Length = 402 Score = 384 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 126/398 (31%), Positives = 200/398 (50%), Gaps = 2/398 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD I+ K ++ DG GL L + +G KLW++R+ L + + GAYP VS Sbjct: 3 LTDKAIRGVKGGAKPVKMADGGGLYLEVTPAGGKLWRYRFR--LAGKENVFAIGAYPRVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DARK R E++ L+ + +P ++++ + + NTF VA+ W+ K S ++ + Sbjct: 61 LADARKARDEARDLVKQGFNPSHYRQQAKQAVIDENLNTFAPVADEWYQSKVDSWSKGHR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + L++DI P IG + I I + L ++ + ARGA Q + V A Sbjct: 121 HHVRTILDKDILPRIGKLPIRSITSPLLHDVMKKIVARGATTRAILARQIMGSVFNLAIL 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 T D P+ + + + ++ + + + + + +TR +LT Sbjct: 181 THRADTNPAEPLKRQIARCVTEHHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLTAV 240 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 RP E ARW E D + W IP RMK + H VPLS+ A+ +L+ ++P++G F+FP Sbjct: 241 RPGEVCGARWAEFDIDGQNWTIPKERMKTRKPHIVPLSNQAVDLLKELEPITGDTAFLFP 300 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 S+ Q M +Q++ A+ + G HG R ST LN G+ D IE LAH + N Sbjct: 301 SQGTKTQTMPTQSIRNAVVKLGYADKFSPHGARGTFSTMLNGRGYNSDWIERQLAHDEGN 360 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 VR +YN YL +RR M+Q WADL+ +G+ VL Sbjct: 361 RVRASYNHMQYLPERRKMLQEWADLLDELRTGAKVLPF 398 >UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacteria RepID=B4RZR6_ALTMD Length = 412 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 150/411 (36%), Positives = 217/411 (52%), Gaps = 11/411 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +IK A+ D L D GL LL+K +GSK W+ +Y ++ + G YP V Sbjct: 2 PLTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYR--FQGKQKTLAIGVYPEV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL DAR+ +E++ L DIDP ++E+ S ++ F A WWN +K +E + Sbjct: 60 SLKDAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEGH 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A IW L + +G I EI +++ VQ ++ RGAL+ +R+ Q I V +A Sbjct: 120 AARIWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAV 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS--ISMSTRCLFMWQLL 244 TG++ P+ + EK + + S+ ++LPQ + + + T+ + Sbjct: 180 QTGVLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVH 239 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T RP E A ARWDE D W+IPA RMKM DH VPLS ALA+LE KP S EF Sbjct: 240 TFVRPGELAGARWDEFDLEEKLWRIPAHRMKMKSDHIVPLSRQALAVLENTKPFSARFEF 299 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLV------SHGLRSIASTALNEEGFPPDVIE 358 +FPS + M+ T+ A+ R G G HG R+ AS+ LNE GF PD IE Sbjct: 300 VFPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSILNETGFNPDAIE 359 Query: 359 AALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 L+H+++N VR AY + + YLE+R+ MMQWW+D + + + V K Sbjct: 360 RQLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDSLKNNGNVTPIFKK 410 >UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomonas eutropha C91 RepID=Q0AH02_NITEC Length = 393 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 151/390 (38%), Positives = 218/390 (55%), Gaps = 4/390 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTD+ I+AAKPK+ Y+L DG+GLTLLI GSK W++RY ++ + S G YP Sbjct: 2 KLTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRYL--FNEKESMLSLGKYPET 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +L+ AR + K +L + I+P H+KE+ R + + N+F VA WW K + TE + Sbjct: 60 TLAQARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTERH 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 R +E DIFP IG + + A ++ V VQ+RGAL+ +R+ +VM YA Sbjct: 120 VAYTLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMRYAV 179 Query: 187 NTGLIDAVPSVNIGKA--FEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 GL + P+ +I A +K +K N I +LP L+ + TR L Sbjct: 180 QHGLSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQLMTL 239 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T R +E RW+EI F+ +EW+IP RMKM H VPLSD A+ +L +K L+ Sbjct: 240 TFIRTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSDPVL 299 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 +FPS + + M++ T+ AL R G G + HG R +AST L+E+ F IE LAH Sbjct: 300 LFPSERRNGKTMSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQLAHA 359 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 +++EV AYN + YLEQRR MMQWW + ++ Sbjct: 360 ERDEVSAAYNHALYLEQRRKMMQWWGEYIE 389 >UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VMW7_9GAMM Length = 419 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 118/407 (28%), Positives = 212/407 (52%), Gaps = 7/407 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 + L+D +++ KP + + D GL L + SG + W+ +Y + + + G+YP Sbjct: 20 RMLSDAQVRKIKPLEKKKRYADEKGLYLEVTPSGGRFWRLKYR--FNGRESTLTIGSYPE 77 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL+ AR+ R E+++ L +IDP + ++++ + E+ F +A W +K + E Sbjct: 78 ISLAQARRARDEARIQLYSNIDPNAVKNQRLQQTDESI--LFKSLAMEWMEDRKAVIKET 135 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 E+D+FPA+G++ I +IK ++ + ++ARGALE +R + +A Sbjct: 136 TYLRDLSVFEKDLFPALGNMPIDQIKGKDVLACAKKIEARGALEMAKRSIPLTGRIFRFA 195 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 G+++ P+ ++ +A + + K+M + + P + M S + LT Sbjct: 196 IRKGIMENDPTPHLQEALKPRKVKHMARLDILEFPPFLERMDRYHGSPMIKTAIQLMTLT 255 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R AE WDEIDF W+IPA +MKM + H VPLS A+ ++E ++PL+G ++++ Sbjct: 256 FVRTAELRMMEWDEIDFETKLWRIPADKMKMAQPHIVPLSKQAIELIEQLRPLTGNKQYV 315 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 F + +PM+S + ++ G G + HG R +AST L+E+G+ D IE LAH Sbjct: 316 FYN-HSTAKPMSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRV 374 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 N V +AYN + +L+ R MMQ W+D + + ++ + V Sbjct: 375 GNAVSQAYNHAQHLDYRIKMMQEWSDFIDGLR--NKIVPFPKRNEAV 419 >UniRef50_D0W4G5 Site-specific recombinase, phage integrase family n=4 Tax=Neisseria RepID=D0W4G5_NEICI Length = 428 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 138/394 (35%), Positives = 213/394 (54%), Gaps = 7/394 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L D +I+ AKP + Y+L DG GL L I +SG KLW+F + +R S G YP V Sbjct: 25 KLNDRQIRNAKPAEKPYKLNDGKGLYLYINTSGGKLWRFDF--ACNGKRKTLSIGKYPTV 82 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL++AR+ ++ +LA DP E ++++ + A NTF +A RW T E++ Sbjct: 83 SLAEARETAETARRMLAAGQDPSEAKQQEKEERKAAALNTFESIARRWHTDNLTRWKENH 142 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A + R E D+FP +G + I EI+ + + + V ARG T ++ + V YA Sbjct: 143 AARVLRYFETDVFPVVGAMPIQEIRVNHIKTLLDSVMARGVNNTAEKIREWAGAVFDYAA 202 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 L ++ P+ + + N P++ ++L + + A I R M +L Sbjct: 203 LLELTESNPAHVLRRYIPSVPAGNRPALPREELTEFFCRLLLADIEPQNRIALMLIMLVF 262 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNR-----DHTVPLSDGALAILEMMKPLSGG 301 R E RWDEIDF+A W IPA RMK + HTVPL+D L +L +K ++G Sbjct: 263 VRNTELRGGRWDEIDFDARLWVIPAERMKHEKTAPKPPHTVPLADWTLELLAELKAITGD 322 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 ++FPSR K + ++ T+ + G G+ HG R++AS+ LNE+GF PD IE L Sbjct: 323 TPYLFPSRTKKDGFISENTLGKIMNNMGYKGIATPHGFRALASSVLNEQGFNPDAIERQL 382 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 AHV++N +R AYNR+DY+ +RR MM+W++ ++ Sbjct: 383 AHVEENRIRAAYNRADYMTERREMMEWYSGYLRE 416 >UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV41_9DELT Length = 401 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 144/401 (35%), Positives = 214/401 (53%), Gaps = 8/401 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +K LTDT I+ AKPK+ Y++ D GL +L+ G KLW+ +Y + + Sbjct: 1 MPKK---LTDTAIRTAKPKEKPYKMADSGGLYVLVNPGGGKLWRLKYR--FEGKERLFAI 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAVSL +AR +K ++A+ +DP + + + A++ TF +VA W K Sbjct: 56 GTYPAVSLKEARARAVTAKEMIARGVDPCAAR-KAAKAEAIARSRTFEVVAREWHKKKLA 114 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 T ++A I R LE FP +G I E+ A + + V+ +G LET RRL Q + Sbjct: 115 GWTPNHARQIIRRLETLAFPDLGSRPIAELGAPDFLAVLGKVERQGHLETARRLAQICGQ 174 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 V YA+ G+I A P+ ++ +A KP + + P ++ L+ + +S Sbjct: 175 VTRYARLAGMIVADPASHLTEALTTKPVRLHAAITEPREIGALLRAIDDYPGDVSVSFAL 234 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 R +E A W EID + +EW IPA RMKM R H VPL+ + + + ++ Sbjct: 235 KIMPYVFVRSSELRRATWAEIDLDRAEWLIPAERMKMRRPHLVPLARQVVGMFRALHAIT 294 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIE 358 G RE +FP + ++ + AL+R G G + HG RS+AST LNE G+ PDVIE Sbjct: 295 GNRELVFPGTASVTRCISDVGLLNALRRLGYGRDEMTVHGFRSMASTRLNEMGYRPDVIE 354 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 A LAH ++N VR AYNR+ Y+E+RR MMQ WAD + + G Sbjct: 355 AQLAHAERNSVRDAYNRAQYVEERRRMMQEWADYLDSLRDG 395 >UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae RepID=B9Z434_9NEIS Length = 395 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 131/394 (33%), Positives = 210/394 (53%), Gaps = 1/394 (0%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL+D +I+ +KP D Y+L DG GL L I+ +G+K W++RY+ TK + G YP V Sbjct: 2 PLSDVKIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPTKDGIY-TIGEYPDV 60 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL++AR R + L+ + +P +K SQ+ T +VAE W V +E Y Sbjct: 61 SLAEARAERERVRALVKEGKNPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSETY 120 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + L+RD+ G++ I E+ + L+ A+ + RGA R + Q + +A Sbjct: 121 RKQVEKHLQRDLLDEYGELPIREVTSAQLLAAISKIDERGAPSIARLVRQWAGSIFRHAI 180 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T D+ P+ + A P ++ + D+LP + + TR Q+LT+ Sbjct: 181 ATLRADSDPTYPLRGALRMPPTRHNAHLSADELPGFLKALDAYKGFGLTRLAVNLQMLTL 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R E A W E D +A+EW+IP +MKM H VPL A+AI+ ++PL+G R ++F Sbjct: 241 VRTQELRLAEWAEFDLDAAEWRIPPEKMKMRDPHIVPLPKQAVAIMRELEPLTGRRRWVF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P+ + M + T+ ++ G G HG R+ AST L+E+G+ D+IE LAH+++ Sbjct: 301 PNVRNHDTGMTNTTILRVIEILGYKGRATGHGFRATASTILHEQGWNTDIIERQLAHLER 360 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 N+V+ AYN + YL++RR M+Q WAD + Sbjct: 361 NKVKAAYNHAGYLKERREMLQAWADYLDLQRDKK 394 >UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4I9_9PROT Length = 410 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 141/407 (34%), Positives = 214/407 (52%), Gaps = 12/407 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ +K AKPKD Y+L DG GL LL++ +G K W+ Y ++ + G YP +S Sbjct: 3 LTELAVKNAKPKDKPYKLSDGGGLFLLVQINGGKYWRLAYR--FADKQKTLALGIYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR+ R +++ LLA D DP +KE R Q A N+F +A+ VK TE +A Sbjct: 61 LADARERREQARKLLANDTDPSAIKKETKRILQTATVNSFSALAKELHKVKAPMWTEGHA 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++E+ FP IGD + EI+ LV ++ V+A+G ET RL Q I+ YA Sbjct: 121 KQWMLNMEKYAFPVIGDRPVAEIEPLELVGIMRNVEAQGTFETRDRLLQTISSTFKYAIA 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA----SISMSTRCLFMWQL 243 G P+ ++P+ +N + D++P + +S+ F L Sbjct: 181 IGKAKYNPAEIRLALADRPKVENFACLSTDEIPAFLRAFDDYQERGKVSLIAVAAFRLLL 240 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMK------MNRDHTVPLSDGALAILEMMKP 297 LT TR +E ++W + D +A W IPA + + H VPLSD A+A+L + P Sbjct: 241 LTATRSSEVRFSKWADFDLDAGCWIIPAEQTGRKGKHGKRKPHAVPLSDQAIAVLRDLYP 300 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 ++G E +FPSR + ++ TVN ++ G G HG RS+A T L + G +V+ Sbjct: 301 VTGHGEHVFPSRNGMGRVISENTVNKIIETMGYKGRQTGHGFRSLARTTLGDMGHRWEVL 360 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 EA L+H +N+ AY R+ Y E+RR +MQ WAD + A SG+ V+ Sbjct: 361 EAMLSHALENQTAAAYVRTTYFEERRGIMQKWADYLDAVKSGAQVIP 407 >UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio RepID=B8J055_DESDA Length = 402 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 126/399 (31%), Positives = 208/399 (52%), Gaps = 8/399 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M T LT+ +I+ KP + DG+GL L +G K W+ +Y + + + SF Sbjct: 1 MP-PTNKLTEIKIRNIKPNGKIERFVDGEGLYLETSVAGGKHWRMKYR--VNGKEKRLSF 57 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +P +SL +AR++R E+K L + +DP +K+ QE TF +A + +++ Sbjct: 58 GPWPDISLKEAREMRDEAKRQLRESLDPSAEKKKAK---QEQAAPTFRDIALEYVEHQRS 114 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + L D++PA G I + ++ ++ ++ R A ET R+ + Sbjct: 115 VWAASHTRTVEGRLALDVYPAFGAKPIAAVTPQDILAMLRKIEERRAFETASRVLGFCSL 174 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLF 239 + YA GL++A P ++ A + K + +I P ++ LM + S+ R Sbjct: 175 IFKYAVTLGLVEADPCRDLRPALKPYAKGQLAAITKPKEVGALMRAIDDYKGSVVVRAAL 234 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 ++ LT RP E W EI+F EW IPA +MK +H VPLS AL +L + P + Sbjct: 235 LFSALTFCRPGEIRHVEWAEINFEREEWTIPAEKMKGRTEHRVPLSRQALEVLHGIMPYT 294 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGFPPDVIE 358 G +++FP+ N+P++ V +AL+ G + +HG RS+AST LNE G PD IE Sbjct: 295 GSAKYVFPTPRSNNRPLSENGVLSALRNMGYTKEQMTAHGFRSMASTLLNELGHRPDAIE 354 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 A LAH +++R YNR++Y+++RR +MQ WAD ++ Sbjct: 355 AQLAHKGADKIRATYNRAEYMKERRNLMQAWADYLEDLK 393 >UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacteria RepID=Q3JN19_BURP1 Length = 462 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 126/401 (31%), Positives = 207/401 (51%), Gaps = 8/401 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++ AKP+D Y+L DGDG+ LL++ +G K W+ Y ++ + G YP VS Sbjct: 60 LSDLAVRNAKPQDKPYKLTDGDGMFLLVQPNGGKYWRLAYRYL--GKQKTLALGVYPEVS 117 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ RAE++ LAK DP E +K R ++ A N+F +VA W ++ V Sbjct: 118 LALARQRRAEAREQLAKGADPGETKKADRRAARLAADNSFEVVALAWLEERRPYVEPRQH 177 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + L+ D+FP +G I +I A ++ ++ + +RGA T R+ I V +Y Sbjct: 178 ERTLVRLKNDVFPWLGKRPIADIDAPEILAVLKRIDSRGARFTAHRIRSEIGRVFVYGIK 237 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G A P+ ++ KA Q + SI P Q+ +++ S + C + Sbjct: 238 EGHCKANPAASLVKAIPPAQTTHFASITEPAQVGEMLRAFDGFSGTFPVLCALKLAPMLF 297 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E +A W D +EW+ + K +H VPL+ A+ IL+ + ++G +++F Sbjct: 298 VRPGELRKAEWSHFDLEKAEWRYLVTKTKT--EHLVPLATQAVKILKELHAVTGSGQYVF 355 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALN-EEGFPPDVIEAALAH 363 P +PM+ +NAAL+R G + HG R++A T L+ E P+VIE LAH Sbjct: 356 PGARSKQRPMSDAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAH 415 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 + + RAYNR+ ++++R MMQ WAD + G+ ++ Sbjct: 416 TVPDTLGRAYNRTKFIKERCAMMQKWADFLDQLKLGAKIIP 456 >UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria RepID=C1D8D2_LARHH Length = 452 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 139/428 (32%), Positives = 216/428 (50%), Gaps = 34/428 (7%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA- 65 PLT IK KP+D Y+ DG GL LLI +GSK W+ Y + ++ + G Y Sbjct: 6 PLTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYR--INGKQKTLAIGVYCQF 63 Query: 66 ---------------VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLV 110 +SL+DAR ++ +LAK IDP E ++E + + +F V Sbjct: 64 ALVDDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYV 123 Query: 111 AERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET 170 A W +A ++ LER IFP IG + EI+ ++ A++ V+A+ L+ Sbjct: 124 AREWHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDV 183 Query: 171 VRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS 230 RL Q + ++ YA TG ID P ++ A + + + P++ ++LP+L+ + A Sbjct: 184 TSRLRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAK 243 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNR 278 + TR LLT R +E ARW+EIDF+ + W IP R KM Sbjct: 244 LRPLTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRT 303 Query: 279 DHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVS 336 H VPL ALA+ + ++G E +F P +PM+ TVN ALKR G + Sbjct: 304 PHLVPLCQQALALFREVHAITGRFELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCG 363 Query: 337 HGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVK 394 HG R++A +AL+E G F + IE ++H +++ VR AY +++++L +RR MM WWAD + Sbjct: 364 HGFRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLD 423 Query: 395 AADSGSIV 402 A G+ + Sbjct: 424 AQREGTYI 431 >UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K287_PSEFS Length = 401 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 132/402 (32%), Positives = 214/402 (53%), Gaps = 12/402 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL DT + AKP+D Y+LYD GL L ++ +G + W+ +Y + + + G YP V Sbjct: 2 PLKDTNCRNAKPQDKPYRLYDEQGLYLEVQPNGGRYWRLKYR--FLGKEKRLALGVYPEV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 L +AR+ R +++V LA DP ++ SQ +TF VA +W N++++S +Y Sbjct: 60 GLQEARRKRDDARVQLASGQDPSLQRRMAKVVSQLDHQHTFESVATQWLNIRESSWDPEY 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + LE + FP +G + I+ I LV+ +Q + RGA ET RR+ Q ++ +A+ Sbjct: 120 TRTVRQRLELNAFPWLGKLPISSISTPMLVENLQRIIKRGARETARRVAQIYKQIFEFAE 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 G+ N+ + + K+ ++ P++L L+ + + + +M C L Sbjct: 180 AAGITPPNQIGNLSRTLPAKRVKHFAAVTDPEKLGALLKALDSYAGTMPVCCALKLAPLL 239 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKM-------NRDHTVPLSDGALAILEMMKPL 298 RP + W E++ +A EW IP +MK DH VPLS A+A+L +KPL Sbjct: 240 FCRPGDLRHMEWSEVNLDAGEWLIPGHKMKGLTATKQDRPDHLVPLSQQAIAVLHELKPL 299 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE-EGFPPDV 356 +G + FPS ++PM++ V +AL+R + G + HG R+ A T E GF PD+ Sbjct: 300 TGRHRYAFPSARGGDRPMSNNAVLSALRRMDISGDEMTGHGFRATARTIGAEVLGFRPDL 359 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +E LAH KN + RAY+R+ +L +RR MMQ WAD + + Sbjct: 360 LEHQLAHTVKNPLGRAYDRTSFLPERREMMQIWADFLDSIKR 401 >UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomonas RepID=A5W5R9_PSEP1 Length = 393 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 141/387 (36%), Positives = 209/387 (54%), Gaps = 3/387 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT + AKP++ Y L D GLTL + +G K W FR+ ++ + S G YP + Sbjct: 3 LTDTAARQAKPREKGYTLADSLGLTLYVAETGVKSWHFRFTWL--GKQARISLGTYPEIG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR R E++ +A+ DP+E ++E+ AK TF V E W +K +TE Sbjct: 61 LKEARARRDEAREDVAQGKDPRESRREKKVERLGAKERTFRRVYEEWLEFRKGGLTESTV 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I ++E D+ PA G I IK ++ ++ ++ RG++ T + Q I +V YA Sbjct: 121 KVISNAMELDVLPAFGLRQIDSIKRADVITLIRRIERRGSITTAVKTRQWIGQVFRYAVA 180 Query: 188 TGLIDAVPSVNIGKAFEK-PQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G+I+ P+ + EK KN P + ++P ++ + + + +C +LT Sbjct: 181 IGMIEINPTAEMHAVTEKMAPHKNRPFLAFTEMPAIIKAIEESQSGLQLQCATKLLILTA 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RPAE +A W EID + + W IPA++MKM RDH VPLS A+ +L M P+SGG +++F Sbjct: 241 CRPAEVRKAEWSEIDLDTATWSIPASKMKMRRDHVVPLSRQAVELLRSMLPISGGLKYVF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P+R +P+ L R G G HG R + ST +N G+ D IE LAH D Sbjct: 301 PNRTDAVRPIGINYAVNLLDRCGYTGRQSPHGFRHLFSTEMNSRGYNKDWIERQLAHADS 360 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 + +R YN + YLEQRR MMQ WADLV Sbjct: 361 SAIRDVYNHATYLEQRRDMMQAWADLV 387 >UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 Length = 439 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 147/420 (35%), Positives = 222/420 (52%), Gaps = 19/420 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L +++ AKPKD Y++ DG GL L + + GSK W+ +Y RP K+ + +FG +P V Sbjct: 6 KLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV 65 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +L+ AR R E+K LL + IDP+ QKE + A T F +A W K +ED+ Sbjct: 66 TLAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYT--FEAIAREWHASNK-RWSEDH 122 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + R LE IFP IG I ++K L+ ++ V A G + +RL QR+ +M YA Sbjct: 123 RSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAV 182 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 ID+ P+ ++ A + ++ P++ + P+ + + + TR LLT Sbjct: 183 QNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVKLSLLTF 242 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARWDE DF+ S W+IPA R MKM +H VPLS A+ +L Sbjct: 243 VRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQ 302 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEG- 351 +K +SG +E +FP + M+ TVN+AL+ G + HG R++A AL E G Sbjct: 303 LKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL 362 Query: 352 FPPDVIEAALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410 + D IE L+H ++N VR AY S++L++RR MMQWWAD + + I L + + Sbjct: 363 WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLDMNRNKYISLMIIQNTK 422 >UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWC6_JANMA Length = 414 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 142/405 (35%), Positives = 213/405 (52%), Gaps = 10/405 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + PLTD IKAAKPK+ YQL DG+G+ L I SGSK+W+ Y + T+ +F Sbjct: 1 MPKLATPLTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTF 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAV L++AR+ RA++K + + +DP + ++ + S A NTF VA W K Sbjct: 61 GHYPAVGLAEARRKRADTKKQIVEGVDPAQARRVEKAISATAAANTFEAVARMWHQNKLE 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 A++I R LE+D+FP IG I E+KA ++ ++ ++ RGA E RR Q ++ Sbjct: 121 QWQPRTANNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLRQIEKRGAAEIARRNAQVCSQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRT--ASISMSTRCL 238 + YA G+ + P + A + K +I +LP+ + T+ A + TR L Sbjct: 181 IFRYAIACGIAENDPVPALRGALKPRIKGVHAAILVAELPEFLETLNHNKARMFPVTRIL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR--------DHTVPLSDGALA 290 +LT R +E E W E+D +W IP RMKM + DH V L A Sbjct: 241 MQLMMLTFVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWA 300 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 L ++ +GG +++FP++ P +P+++ + AALKR G G HG RS+A L Sbjct: 301 FLRELRTYTGGNQWLFPNQRDPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTL 360 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 G IE LAH +Y+R +LE+R+ MMQ +AD + A Sbjct: 361 GNDISNIERQLAHSSGEAYGASYDRESFLEERKIMMQGYADYIDA 405 >UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C8U1_ACAM1 Length = 399 Score = 367 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 213/403 (52%), Gaps = 11/403 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA T LTD +++ AKPK Y+L DG GL L I +G K W++RY + + + S Sbjct: 1 MA--TNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYR--IQGKESTFSI 56 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YP + L +AR E++ L+A+ ++P K + Q A+ NTF VA+ W++ K Sbjct: 57 GSYPELGLGEARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNA 116 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +E Y + L RD+ P++G +TEI A ++ ++ V+ARGA + + Sbjct: 117 GWSESYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRM 176 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLF 239 V+ YA TG D ++G A K+ +I P ++ +LM + SM R Sbjct: 177 VLGYAVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAM 236 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 LT RP E +W +I++N EW+ + K DH VPL+ A+ IL+ ++ ++ Sbjct: 237 RMGALTFVRPGELRTMQWSQINWNTKEWRFQVS--KTETDHIVPLATQAIEILQTLQLIT 294 Query: 300 GG--REFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALN-EEGFPPD 355 G ++FPS + M++ V AAL+ G+ + HG R++A T + E + P+ Sbjct: 295 GNGTSRYVFPSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPE 354 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +IE LAH + + RAYNR+++LE+RR MMQ WAD + + Sbjct: 355 LIEHQLAHAVRGPLGRAYNRTEFLEERREMMQAWADYLDELER 397 >UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID=C6ALW6_AGGAN Length = 413 Score = 366 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 151/407 (37%), Positives = 230/407 (56%), Gaps = 9/407 (2%) Query: 1 MARKTKPLTDTEIKAAKPK-DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MAR K LT+T+++ K + L DG GL L I +G+K W+FRY RP+TK RTK + Sbjct: 1 MARIVKGLTNTQVERVKYTPNGKNVLNDGKGLFLEIYPTGAKKWRFRYERPITKARTKFN 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G +P+++L+ AR R E LLA+ IDPQEH K++ + Q NTFL AERW K+ Sbjct: 61 IGDHPSITLAQARVKRDEYNALLAQGIDPQEHAKQKHQALQFQLENTFLKWAERWKENKE 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA-------RGALETVR 172 V D WR +E + ++G I I ++ L++A+ P++A +T++ Sbjct: 121 KKVKADTLRKDWRRIEMYLLESLGQIPIDKVLPPLLIQALTPLEAMKDRRTGTADSDTLK 180 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASIS 232 R+ + NE++ YA N G I P +++ + ++ P I P++LP L+ + + Sbjct: 181 RVIRLANEILTYAMNAGAIPFNPCLSVKDIYSFAPAESHPHIEPEELPLLLTDISESKAQ 240 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 T+ L ++QLLT+ RP+EA+ A W E D W IPA +MKM H VPLS + +L Sbjct: 241 PRTKDLILFQLLTMVRPSEASNAEWAEFDLENKVWTIPAEKMKMKHPHKVPLSSQTIRLL 300 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 + ++ +G + F+F SR K N+PMNSQ+VN AL G G +HGLRSI T + E+ Sbjct: 301 QHLQSQTGHKRFVFASRNKINEPMNSQSVNKALVDMGYKGKQDAHGLRSIGRTYIGEKQM 360 Query: 353 P-PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +V+E +AH + Y+++D+ EQR P+MQ W D V+ Sbjct: 361 DGYEVLEMCIAHKVGTSTGKIYDKADFFEQRIPIMQAWGDFVEQCAE 407 >UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_SALA4 Length = 449 Score = 366 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 141/419 (33%), Positives = 224/419 (53%), Gaps = 19/419 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L +I+ AKPK+ Y++ DG GL L + GSK W+ +Y RP K+ + +FG YP + Sbjct: 31 KLNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTI 90 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +L++AR R +K LL++ IDP+ QK + A F +A +W T +ED+ Sbjct: 91 TLAEARAKRDAAKKLLSQGIDPKVEQKGAQAEIEGAY--LFETIARQWHASNLT-WSEDH 147 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + +LE+ IFP+IG I ++ L+ ++ V G + +RL QR+N +M + Sbjct: 148 SHRVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRFGV 207 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 L+++ P+ ++ A + + P++ P ++P+ + + + TR LLT Sbjct: 208 QNDLLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTF 267 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW E++F SEW IP R MKM +H VPLS A I + Sbjct: 268 IRSSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKR 327 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEG- 351 + LSG E IFPS P + M+ TVN+AL+ G + HG R++A AL+E Sbjct: 328 LHALSGKGEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKL 387 Query: 352 FPPDVIEAALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 + D IE L+HV++ V+ +Y S+YLE+RR M+QWWAD + A +GSI +++ Sbjct: 388 WNDDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDANKNGSITPYDFARV 446 >UniRef50_B4X5T7 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5T7_9GAMM Length = 398 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 204/398 (51%), Gaps = 8/398 (2%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T L+D +I+AAKP+D Y + DG+G+ L I G K W+F+Y ++ + S G YP Sbjct: 3 TNKLSDVKIRAAKPQDKLYSISDGEGMFLEISPKGGKWWRFKYR--FNGKQKRLSLGTYP 60 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS--V 122 + SL AR R +++ LLA +DP + +K + ++ A NTF VAE W K S Sbjct: 61 STSLKAARDKRQQARELLASGVDPAQQRKTEKLATETALRNTFAGVAEEWAQNKVRSEKW 120 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 T L+ + P +G I+EI L +Q Q T RL +E+ Sbjct: 121 TPTTEKKRRIWLDNGLMPYLGSRPISEITTAELWGVLQHTQKTSGY-TANRLRGMASEIF 179 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMW 241 +A TG D P++ + ++K+ +I PD++ +++ + +++T+ Sbjct: 180 NFAMATGRADNNPALPLQGQIAVKKEKHRLAILEPDEVGKMLRAIDGCQAAVTTKAAARL 239 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP E A W EID + W IPA +MKM H VPLS A+AIL+ ++PL+G Sbjct: 240 APLVFVRPGELRHAEWSEIDLKKALWSIPAEKMKMRESHVVPLSRQAVAILKEIQPLTGS 299 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAA 360 ++F KP +P++ T+N LK G G + HG R+IA T L+E D IE Sbjct: 300 SGYVFEG-TKPGEPISDNTLNKLLKALGYKGKMTQHGWRAIARTLLDEVLDVRVDWIEHQ 358 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 LAH ++ RAYNR+ +LE R MMQ WAD + + Sbjct: 359 LAHSVRDANGRAYNRTSHLEGRIGMMQLWADYLDKLKA 396 >UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae RepID=Q8VQN9_ECOLX Length = 421 Score = 365 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 140/407 (34%), Positives = 220/407 (54%), Gaps = 21/407 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+AAKP D Y+L DG G+ LL+ +GS+ W+ RY + + + G YP VS Sbjct: 3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALGVYPEVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS+AR R E++ L+++ IDP E ++ + + F +A RW K + ++ Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLS--FEHIARRWHASNK-QWAQSHS 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + +SLE +FP IG+ IT + L+ V+ +A+ E RL QRI+ VM YA Sbjct: 118 DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 +G+I P++++ A ++++ P++ +LP+L+ + + TR M LL Sbjct: 178 SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFI 237 Query: 248 RPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEMM 295 R +E ARW EID + + W IPA R KM H VPLS A+AIL + Sbjct: 238 RSSELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL 297 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--GVLVSHGLRSIASTALNEEG-F 352 + +G IF P +P++ TVN AL+ G + HG R++A +AL E G + Sbjct: 298 QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLW 357 Query: 353 PPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADS 398 D E ++H ++N VR AY +++++LE+RR M+QWWAD + A Sbjct: 358 SRDAGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE 404 >UniRef50_C0N6F7 Site-specific recombinase, phage integrase family protein n=2 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F7_9GAMM Length = 401 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 135/401 (33%), Positives = 211/401 (52%), Gaps = 14/401 (3%) Query: 7 PLTDTEIKAAKPK--------DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 PLTD +IK KP + Y++ D GL + + GSK W++++Y K Sbjct: 2 PLTDKQIKNLKPGIRPDKSETNKPYKVSDSHGLYIEVPLKGSKRWRYKFY--FEGTERKL 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 S G YP +SL +AR+ R + + + IDP +++ R + NT+ VA W Sbjct: 60 SLGTYPKISLKEARQKRDDIRKKIDAGIDPSYERRK-KRLNASVSGNTYEEVAREWHARN 118 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 K + T+ YAD LE++ FP IGD I +I A L+ ++ V RGA+ET R+ + Sbjct: 119 KANWTKKYADLTLSRLEQNAFPWIGDRQIDKITAPELLTVIKRVFDRGAIETAHRIRRLS 178 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRC 237 N + +A G+ + P+ + AF + K+ ++ P ++ +L+ + S +TRC Sbjct: 179 NTIFKFAIANGMTETNPAAALEGAFPTQKVKHHSAVTEPKKVAELLRAIDGYSGHFATRC 238 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 L + RP A W +ID S W+I RMK R H +PLS AL ILE ++P Sbjct: 239 ALKLSALVMNRPINIRAAEWGDIDLENSVWRIHMGRMKSRRTHIIPLSRQALEILEEIRP 298 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEEGFPPDV 356 L+G +++FP +PM+ T+ AAL+R G G + +HG R +AST L+E+G+ D Sbjct: 299 LTGEGKYVFPCMRSKARPMSENTICAALRRMGFSGEEMSAHGFRGMASTLLHEKGYNSDW 358 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 +E LAH+D + R AYN + +L+ R M+Q WAD + Sbjct: 359 VERQLAHID-SSTRSAYNHAQHLDDRAKMLQEWADYLDELR 398 >UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B120_SULD5 Length = 419 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 135/419 (32%), Positives = 216/419 (51%), Gaps = 20/419 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +K PLTDTE+K +K ++ Y+L DG GL LL++ +GSK W+ Y RP R S Sbjct: 1 MPKKVLPLTDTELKKSKIQEKTYRLTDGAGLYLLVEPNGSKGWRLDYTRPNGG-RNTISL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDP----------QEHQKEQVRNSQEAKTNTFLLV 110 G YP ++L +AR+ R E K + K +DP Q +KE +E K NTF V Sbjct: 60 GTYPTITLCEAREKRDELKKQIKKGVDPSLERKGVKELQREEKEADHAEEERKQNTFEKV 119 Query: 111 AERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET 170 A ++ + Y LE IFP +G+I I ++ +++ ++ ++A +ET Sbjct: 120 ARDFFESITIELVPKYHSSKLARLENHIFPYMGNIPIDQVSRLMIIEHLERLKAANKIET 179 Query: 171 VRRLCQRINEVMIYAQNTGLIDAVPSVNIGK--AFEKPQKKNMPSIR-PDQLPQLMHTMR 227 RR+ I +V YA L +I K K + ++ P+I P ++ +L+ + Sbjct: 180 ARRILNIIEQVYRYAVTHELAPHNIIADIDKRYVIGKKEVRHFPTITDPVEIGKLVRMID 239 Query: 228 TASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDG 287 +ST+ +LT RP A W+E D W+I A +MKM R H +P+ Sbjct: 240 EYPGDISTKYALKLAILTAQRPYNIRFAEWNEFDLERDVWQISAEKMKMKRPHIIPIILQ 299 Query: 288 ALAILEMMKPLSGG-REFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIAST 345 IL ++P + +++FP+ +P++ T+N AL+R G +VSHG R++ ST Sbjct: 300 IKTILRELEPFTKNRSQYLFPALTSNVRPISENTMNQALRRLGYTKEEIVSHGFRAMFST 359 Query: 346 ALN----EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 N E GF D+IE LAH ++N+ + AYNR++YL +RR +++WWA+ + Sbjct: 360 IANEHIPEHGFHSDIIERHLAHSEQNKTKGAYNRAEYLNERRGLIEWWANFLDKVRMNK 418 >UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VQL7_POLNA Length = 413 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 136/410 (33%), Positives = 208/410 (50%), Gaps = 16/410 (3%) Query: 7 PLTDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 PLTD K K A + DG G+ LL+ +G K W+ Y +R + G YP Sbjct: 2 PLTDIFTKNTKHSGAPAGDKHTDGGGMYLLVTKAG-KYWRMNYR--FAGKRKTLALGVYP 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 AVSL++AR+ R +++ LLA+DIDP ++E + + A NTF VA + +K +E Sbjct: 59 AVSLAEARQGRDKARKLLAQDIDPSAAKQEDRQATATAAANTFEAVAREFHALKAGGWSE 118 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A R E +FP IG + ++ IKA TL+ A++ V+ +G L T + L +V Y Sbjct: 119 GHATKWLRMNELYLFPHIGTLPLSTIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFRY 178 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 TG ++ P V++ A + K+ +I P + ++ + + T Sbjct: 179 GVQTGRCESNPGVDLKGALQPHIAKHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLSA 238 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAILEMMK 296 L RP W ID + IPA MK + HTVPL+ AL +L+ +K Sbjct: 239 LFFQRPGNIRAMEWAWIDLDGQMLTIPAKSMKSSKHEKANGKPHTVPLARQALDVLKSIK 298 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE--EGFP 353 L+G ++FP +PM+ T+NAAL+R G V+HG R++A T + E G P Sbjct: 299 QLTGHGRYVFPGARTGERPMSDGTINAALRRLDYGNNEHVAHGFRAMARTMMAERLSGIP 358 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 D++EA L H K + AY+RS+YL QR+ MMQ WAD + +G+ V+ Sbjct: 359 QDMVEAQLGHGKKGPLGSAYDRSEYLPQRQQMMQTWADYLDKLRTGAEVI 408 >UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A1WW57_HALHL Length = 412 Score = 363 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 137/415 (33%), Positives = 215/415 (51%), Gaps = 8/415 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M R T LTD + + AKP + +L DG GL LL+KS+G K WQFRY RP + + Sbjct: 1 MGRGTNKLTDRQCRTAKPPEGKQQLKLTDGGGLVLLVKSNGGKQWQFRYRRP-SGREATM 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-V 117 G YP V LS AR+ R E++ LLA IDP + +K Q + A T++F VA WW+ V Sbjct: 60 GLGVYPDVPLSKARERRDEARALLADGIDPIDQRKAQRSAAASADTHSFEAVAREWWDAV 119 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + V +A+ R LE+ FP +G ++ I+ +++A++ ++A +ET R+ Sbjct: 120 HRHKVVASHANRNLRRLEQYAFPKLGRRPVSAIEPPDVLEALRRIEALEHVETAHRVKTL 179 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTR 236 I +V YA TG P+ ++ P+ +++P+I P +L L+ + +TR Sbjct: 180 IGQVCRYAIATGRGSRDPTADLRGMLRSPKTRHLPAITEPAELGPLLRAIDGYRGQPTTR 239 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + RP E A W D ++ W + K PL A++IL ++ Sbjct: 240 AALQLAPIVFCRPGELRAAEWQAFDLSSGTWDYQPS--KDGDPLVTPLPRQAISILRELE 297 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 P+S ++FPS P++P++ T+ AALKR GG +V+HG R+ A T L E G+ + Sbjct: 298 PISRSSRYLFPSGRTPDRPISDNTLTAALKRLDYGGRMVAHGFRAAARTILVERLGWGIE 357 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410 ++E L H ++ RAYNR+ ++EQR M+Q WAD + S + R Sbjct: 358 IVEMQLGHRVRDAHGRAYNRTQWIEQRGVMLQQWADYLDELREASDTEPTADRDR 412 >UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadaceae RepID=B1JDS4_PSEPW Length = 402 Score = 363 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 214/403 (53%), Gaps = 4/403 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I+ A+P+D Y++ D GL L + ++G KLW+ RY + G YP+V+ Sbjct: 3 LTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYR--FEGKAKMLGLGTYPSVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ R ++ LL++ IDP ++ +Q + + EA+ T +A W++ + A Sbjct: 61 LAHARERRDAARKLLSQGIDPSAYK-QQEKAAAEAQALTLETLAREWYDYNQPRWAPATA 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + LE DIFP IG E++ LV V+ ++ R A R++ Q ++++ + Sbjct: 120 SKALQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAFNVARKVRQWLSQIFRFGLA 179 Query: 188 TGLIDAVPSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G++ P+ ++ A P+ ++ P + +LP+L+ + A +++ LLT Sbjct: 180 KGVVAGNPATDLDVVAAHAPRTRHHPHVSEAELPELLEKLEAAQCDFTSKIAIRLLLLTA 239 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E A WDE D ++ W IPAARMK R H VPL A+ +L + L+G F Sbjct: 240 VRPGELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTGTYPLAF 299 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P R ++PM+ TVN AL G G HG R + ST+LN G+ D IE LAH D+ Sbjct: 300 PGRNDRSRPMSENTVNKALSTMGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQ 359 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 + +R YN + YLEQRR MMQ WAD V A + V+ ++ Sbjct: 360 DSIRDTYNHAHYLEQRREMMQTWADHVDALAEQTSVVKFKARA 402 >UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGW9_DIAST Length = 428 Score = 363 bits (931), Expect = 9e-99, Method: Composition-based stats. Identities = 142/425 (33%), Positives = 216/425 (50%), Gaps = 27/425 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKL-WQFRYYRPLTKQRTKQS 59 MA T L+DT I++ KP D QL DG+GL LL+ +G K W+F Y + +R S Sbjct: 1 MA--TMALSDTTIRSVKPGDPRRQLTDGNGLYLLLYVNGGKHGWRFDYK--VQGKRKTIS 56 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN------------TF 107 G YPA SLS AR ++ L+A IDP +K + ++ + TF Sbjct: 57 LGTYPATSLSLARAKANAARELVAAGIDPSADRKSKKAAEKKVHEDAKLVAAGKPLNGTF 116 Query: 108 LLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 VA W+ V+ YA+ + R LE D+FP IG + ++ A L+ ++ ++ RG Sbjct: 117 EAVAREWFEVRSPEWAAKYAEKVLRRLEADVFPHIGIRPVGDVTAPELLAVLRRIEDRGV 176 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTM 226 +ET R + +++ +A GL + ++ KP+ ++ P+I P +L +L+ Sbjct: 177 IETAHRAHESCSQIFRFAVGAGLAKGDVARDLKGLLRKPRTRHFPAILCPKRLGELLRAC 236 Query: 227 RTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRD 279 + R + + RP E ARWDEI+ N + W IP RMK Sbjct: 237 DGYVGTHVVRAALSLAPMLLLRPGELRHARWDEINLNTATWTIPGERMKREREGKLNGMP 296 Query: 280 HTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHG 338 H VPL A+ +L + P++G E +F ++PM+ TVNAAL+ G G + HG Sbjct: 297 HIVPLPRQAVQVLRELHPITGRGELVFRGERHHHRPMSENTVNAALRAMGFGADEVTGHG 356 Query: 339 LRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 R+ A T L+E G ++IEA LAH K+ + RAYNR++YL QRR MMQ WA+ ++A Sbjct: 357 FRATARTLLDERLGIASEIIEAQLAHSVKDSLGRAYNRTEYLVQRRKMMQQWANYLEALR 416 Query: 398 SGSIV 402 G+ Sbjct: 417 RGNAT 421 >UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli RepID=Q93UI5_ECOLX Length = 401 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 128/400 (32%), Positives = 205/400 (51%), Gaps = 7/400 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD ++++ + DG G+ L I +SG + W+ +Y + +FG YP V Sbjct: 2 PLTDLKVRSLT---TPGRYADGGGMYLQITASGGRYWRMKYRH--GGKEKLLAFGVYPLV 56 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 + +AR +K L++ DP +K +++ NTF VAE W + + Sbjct: 57 GIKEARDKLFYAKQALSRGEDPGATKKLAKFQAEQDAANTFKAVAEDWLDHQAGRWEAIT 116 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 SLE D++P +G + I+ I ++ V+ ++ RGA E R+ QRI + Y Sbjct: 117 LSRTRASLEADVYPTLGSLPISSITPRQVMDVVKKIEKRGASEIATRVLQRIKSIFRYGT 176 Query: 187 NTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 I+ ++ + + + ++ ++ P QLP+ + + + T +L Sbjct: 177 THQRIERNTMADLVPSEILKPRRVQHRAALAPAQLPEFLKKLASYEGEPHTVNALHLLML 236 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T RP E ARWDEID A W+IP RMKM +H VPLS A+A +E M+PLSG R+ Sbjct: 237 TAARPGEVRGARWDEIDLKAKLWRIPPERMKMRSEHVVPLSSEAVAAIEAMRPLSGNRDL 296 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 +FPS P++P++ T N+A+ R G + +HG R++ ST NE G+ D IE LAH Sbjct: 297 VFPSPFYPSKPLSENTFNSAMARMGYKYLATAHGFRALFSTVANESGWSADAIERQLAHA 356 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 ++N+VR AY+R L +R MM WWA + +G + + Sbjct: 357 ERNQVRAAYDRGVRLPERVKMMNWWAQYLAERKAGKAISS 396 >UniRef50_B7I6Z3 Site-specific recombinase, phage integrase family n=3 Tax=Moraxellaceae RepID=B7I6Z3_ACIB5 Length = 414 Score = 361 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 132/408 (32%), Positives = 207/408 (50%), Gaps = 13/408 (3%) Query: 1 MARKTKPLTDTEIKAAKPKD-ADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + PLTDT+IK AK ++ +L DG GL LLI + +K W+F Y RP TK+R Sbjct: 1 MPKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIG 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG+YP VSL+DAR R E++ LLA++IDPQ +K + ++ NTF VA W K Sbjct: 61 FGSYPEVSLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEW--ESK 118 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 E R L+ I IG I ++ ++ + + +G LET +++ + Sbjct: 119 QDFAESTIRGHKRLLQ-VINSNIGKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKVKCG 177 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCL 238 ++M Y TG + + ++ A + P+ K++ ++ ++ +L++ + + T+ Sbjct: 178 QIMRYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMA 237 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKI--PAARMKMNRDHTVPLSDGALAILEMMK 296 RP E A+W +ID W+ P + K H VP+ +L +K Sbjct: 238 LKIAPYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIK 297 Query: 297 PLS----GGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE-E 350 L+ G E++FPS +PM+ T+N AL+R G + HG R+ A T L E Sbjct: 298 ELTYDPDGESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILEEVL 357 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +P ++IE LAH K+ RAYNR+ +LE+RR MMQ WAD + Sbjct: 358 NYPIEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCDQIKA 405 >UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHC8_THIDA Length = 425 Score = 359 bits (922), Expect = 8e-98, Method: Composition-based stats. Identities = 140/404 (34%), Positives = 214/404 (52%), Gaps = 11/404 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT +K AKP D Y++ D GL LL+ +G K W+ Y +R + G Y VS Sbjct: 19 LTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDYR--FLGKRKTLALGVYSDVS 75 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-KTSVTEDY 126 L+ AR+ R +++ +LA DP E +KE R +Q A+ N+F VA W +K K T+ Sbjct: 76 LARARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQST 135 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 AD LE +FP +G + I +KA L+ ++ V+ RG T RL + ++ Y Sbjct: 136 ADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGV 195 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASI-SMSTRCLFMWQLL 244 TG + P+ ++ A KP+ + P+I + + +R A+ TR + LL Sbjct: 196 ATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFALL 255 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD---HTVPLSDGALAILEMMKPLSGG 301 T R E A+W+EID+ A EWK+PA RMK + HTVPLS ALA+L +K L+G Sbjct: 256 TFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGH 315 Query: 302 REFIFPSRIK--PNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 ++FP + ++ TV L + G G HG R+ A + L+E+G+ + +E Sbjct: 316 SPYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMER 375 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 L H + + AY RS++L +RR MMQ WAD A ++G+ ++ Sbjct: 376 QLDHKETDSTVAAYARSEHLPERRNMMQAWADTCDALETGAEII 419 >UniRef50_A6QCY9 Site-specific recombinase, phage integrase family n=2 Tax=Proteobacteria RepID=A6QCY9_SULNB Length = 409 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 139/404 (34%), Positives = 215/404 (53%), Gaps = 9/404 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR T PLTD EIKAAKPK+ +Y+L+DG GL L I G K W+ +Y + + S Sbjct: 1 MARITNPLTDKEIKAAKPKEKEYKLFDGGGLYLSITPKGQKWWRLKYR--FDGKEKRISL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQE---AKTNTFLLVAERWWNV 117 G YP SL DAR+ R + K +AK IDP +KE+ + NTF + W + Sbjct: 59 GVYPNTSLQDARQQREDFKTQIAKGIDPSRERKEKKEAVKAEVFKSRNTFKSICLEWIEL 118 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 ++ + E R+LE+D + +GD S+ +I H L+ Q +Q RGA+ET R Sbjct: 119 QRPQMAEATLSKYERTLEKDFYAPLGDKSMNDITRHDLITIAQVIQDRGAVETAHRSLGL 178 Query: 178 INEVMIYAQNTGLIDAVPSVNIGK--AFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMS 234 N + YA + +I K + K+ +I + ++ +LM+ + + + Sbjct: 179 CNRIWRYALQFDKVGHNIVSDISKKDVLRSYKNKSFKTITDEVRIGELMNAIDNYTGEFT 238 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 T+ LT RP A W E D W IPA +MKM ++H +PL+ A+ IL+ Sbjct: 239 TKSALRLLPLTFVRPHNIRYAEWSEFDLENGIWTIPAEKMKMKKEHKLPLAPQAVKILKE 298 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FP 353 + P + +++F S I + ++ T+N ALKR GG +VSHG R++ ST E G F Sbjct: 299 IYPYTNDAKYVFHSPISRLKAISENTLNMALKRLDFGGEIVSHGFRAMFSTLAYESGKFR 358 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 +VIE LAH + N+V++AYNR+ Y ++R +++W+AD ++ Sbjct: 359 SEVIEDLLAHQEANQVKKAYNRAAYDAEKREIVEWYADYLENVK 402 >UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157:H7 RepID=B3A9A3_ECO57 Length = 412 Score = 358 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 152/412 (36%), Positives = 236/412 (57%), Gaps = 6/412 (1%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 KPLT TE+K KP++ DY +YDG GL L + +G K+W+FRY P+TK+R + G +P Sbjct: 3 VKPLTVTEVKGMKPREKDYAVYDGFGLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFP 62 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK-TSVT 123 SL++AR++R E + ++A+ +DP +K + TF VA W+ KK + + Sbjct: 63 EFSLAEAREVRDELRRMIARGVDPVTEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELR 122 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + +I + + + P G SI +I A + A+ V + AL+ ++L R+NE+M Sbjct: 123 KPTLYNIEYEVYKYLVPFFGKYSIEKITAPVAINALDAVSDKNALQ--KKLISRLNEIMN 180 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR-CLFMWQ 242 YA N G + A P + I AF + K++ ++ ++LP+ + + + ++Q Sbjct: 181 YAVNCGALKANPLLKIKTAFTGKKNKSLAALPVERLPEFLSWWDSVPHTYQIAHNALLFQ 240 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT+ RP EA +A W EIDF++ W IPA +MK +R+H VPLS A++IL M+ + GR Sbjct: 241 ILTMVRPGEAIKAEWSEIDFDSGLWIIPAHKMKCHREHVVPLSSQAISILRTMQEIKRGR 300 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++F S + PM T+ + + G++ HG RS+ ST LNEEGF PDVIEAALA Sbjct: 301 -YVFFSSRTKDAPMGRNTIKTPIAASKFKGIVTLHGFRSMWSTLLNEEGFNPDVIEAALA 359 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI-VLTHLSKIRLVG 413 H +++R YNR+ YLEQR+ MMQW D A G I + +R+V Sbjct: 360 HKSGDKIRDIYNRTIYLEQRKIMMQWVGDFFDDARKGVINRSGGMKGLRVVN 411 >UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JSX8_PASHA Length = 413 Score = 357 bits (915), Expect = 5e-97, Method: Composition-based stats. Identities = 155/406 (38%), Positives = 216/406 (53%), Gaps = 12/406 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKS--SGSKLWQFRYYRPLTKQRTKQ 58 MAR TK L T+I+ AK KD +Y L DGDGL L +K GSK+W F Y P TK RT Sbjct: 1 MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKIWIFNYTNPQTKNRTNL 60 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-- 116 + G YP ++L++AR + + L+ K IDPQE +K + ++ +TF VAE ++N Sbjct: 61 TIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAENRVNDTFRNVAESYFNGI 120 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 K+ + + W LE IFP IGD + EIK LV V + T+++L Q Sbjct: 121 YKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALVDIYSKVADKS--NTLKKLHQ 178 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 ++ VM +A G+I++ K F P+I ++LPQL + A +S T Sbjct: 179 LVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIELEELPQLFTDLHNAKLSKQTY 238 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK----MNRDHTVPLSDGALAIL 292 L W LT RP EA A W EIDF W IP +MK R H+VPLS AL IL Sbjct: 239 ALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKMKGKADKKRPHSVPLSSQALKIL 298 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 EMMK S F+FP R ++PM++ TVN+ LKR G L +HG+R+ T L+ Sbjct: 299 EMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRNGYKDRLTAHGIRAFVKTFLSSRKV 358 Query: 353 PPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 V E+ L+H+ +++ YNR D+LE+R P+MQ D + Sbjct: 359 DRHVSESILSHLLEGGDDLENTYNRYDFLEERVPVMQLLGDYCEQC 404 >UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacteria RepID=B0RRY6_XANCB Length = 409 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 142/397 (35%), Positives = 208/397 (52%), Gaps = 6/397 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDT I+ AKP +L DG+GL LL++ G++ W++ Y RP+T +R SFG YP V Sbjct: 2 PLTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPEV 61 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL+DAR+ AE++ L+A IDP E +K + A N+F +VA W+ ++ + Y Sbjct: 62 SLADARERLAEARRLVAAKIDPGEQRKAVKAAGEAAAANSFEVVAREWFAKQQKEWSPQY 121 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A+ I R L+ DIFP IG I I A L+K ++ ++ RGA+ET R Q V YA Sbjct: 122 AEKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYAV 181 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLP-QLMHTMRTASISMSTRCLFMWQLLT 245 TG +A P+ + A + + + ++ + ++ R L Sbjct: 182 RTGRAEADPTGALKGALTPWRSMPFAAATTSEEATTVLRKIDISTSRPVVRSALRLAPLL 241 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E RW E+D +A +W+ K R H LS A+ IL + PL+G EF+ Sbjct: 242 FARPGELVRMRWTELDLDAGQWRYFV--TKTKRTHIAALSTQAIEILRDLHPLTGRGEFV 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 FP P + M+ + A +R G+ HG R +AST LNE G + PD IE+AL H Sbjct: 300 FPGGRDPRKHMSGNAILVAARRCGIEKDESTIHGFRHMASTLLNEMGHWNPDAIESALTH 359 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 VR YN++ YL++RR MMQ WAD + + + Sbjct: 360 KMP-GVRGIYNQAQYLDERRKMMQSWADNLDTLKADA 395 >UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV Length = 385 Score = 355 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 124/390 (31%), Positives = 198/390 (50%), Gaps = 9/390 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT +I+AAKPK+ Y+L DG+GL L + SG K+WQ RY + + + G YP ++ Sbjct: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR ++ ++ IDP + +K + N+F + + W++ KK + YA Sbjct: 60 LQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYDHKKQVWSVGYA 113 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++ + + DI P IG + I +I+ L++ ++ + RGA+E + +R EV YA Sbjct: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 TG P+ ++ A + +KKN P + DQ+P + T S S+ + T Sbjct: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG-REFIF 306 R E +W +DF I A+ MK + H VP+SD + +L + ++ EF+F Sbjct: 234 RTKELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVIELLTTLSSITKPVSEFVF 293 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 R +P+ V +K+ G G+ HG R ST +NE +P D IE LAH + Sbjct: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 VR YN + YL++RR MMQWWAD + Sbjct: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 >UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=C7SIL5_ECOLX Length = 420 Score = 355 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 137/422 (32%), Positives = 223/422 (52%), Gaps = 22/422 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ KP D +++ D GL LL+K GS+ W +Y + + ++ + GAYPAVS Sbjct: 3 LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPAVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR+ R + +LA +I+P + + F VA W + +++ A Sbjct: 61 LSDARQQREGVRKMLALNINPVQQRAA--ERGSRTPDKVFKNVALAWHKSNR-KWSQNTA 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + SL IFP IG++ ++E+K + ++ ++ +G LE R Q ++ +M +A + Sbjct: 118 DRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVH 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS-ISMSTRCLFMWQLLTI 246 GLID P+ N+G P +++ P++ ++LP+L+ + TR + L Sbjct: 178 QGLIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRLAVLLMLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW EIDF W IPA R KM H VPLS+ ++AIL+ Sbjct: 238 IRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQ 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG- 351 +K ++G E IFP P +PM TVN AL+ G + HG R++A +AL E G Sbjct: 298 IKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGL 357 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410 + D +E ++H ++N VR AY +++++LE R+ MMQWW+D ++A + K + Sbjct: 358 WAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNK 417 Query: 411 LV 412 + Sbjct: 418 FI 419 >UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enterobacteriaceae RepID=INTZ_ECOLI Length = 402 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 215/403 (53%), Gaps = 11/403 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M++ PLT I AA+P+D Y+L D GL LL+ +GSK W+FRY+ L K+ Q Sbjct: 1 MSK--TPLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYW--LNKREFLQ 56 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 + G YP ++L +AR+ ES+ L+A I+P E +++ F VAE W+ + Sbjct: 57 AIGVYPLITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATR 116 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 +E YA + +LE+D++P +G SI +I A ++ +Q + R A E R+L +RI Sbjct: 117 VGGWSESYAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQARKLRRRI 175 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 E+ +A T L+ P ++ A + + + I ++P + A S+ + Sbjct: 176 GEIFKFAVITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERA-GSVQIQTA 234 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 +LT R AE RW+ I+ + +PA MK R H VPLS A+ +L+ Sbjct: 235 IRLLILTALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTR 294 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVI 357 SG F+FP R ++P+++ + AL+R G + HG R+ STALNE G + PD I Sbjct: 295 SGYSAFVFPGRF-MDKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWI 353 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 E LAHV +R YN++ YL+QRR MMQ +AD + + +G+ Sbjct: 354 EIQLAHV-PKGIRGVYNQAAYLKQRRAMMQDYADAIDSILAGN 395 >UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola DG893 RepID=A6F4S5_9ALTE Length = 437 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 136/394 (34%), Positives = 207/394 (52%), Gaps = 8/394 (2%) Query: 9 TDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSL 68 TDT+ + AK KD Y+L D GL L I+ SGSK W++RY L + + G YP +++ Sbjct: 3 TDTKARKAKAKDTTYRLADSGGLALEIRPSGSKFWRYRYR--LHGKAGMYTVGEYPTITI 60 Query: 69 SDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYAD 128 S+AR +R +K +A P E +K ++ + + NT V + W K + Y Sbjct: 61 SEARAIRDWAKKCVANGEAPAEVKKRELAERRAEQANTLEEVGKEWIARNKAGWSVYYHR 120 Query: 129 DIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNT 188 + R LE DI+P +G I +I ++ +Q V+ R A L Q + + +A T Sbjct: 121 QVTRMLEADIWPNLGKKGIRDITPAQMLAELQRVEER-APTVAVNLKQWLAAIYRHAIAT 179 Query: 189 GLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC---LFMWQLLT 245 D P+ + A +KP+ K+ PS D+ +L + +++ R LT Sbjct: 180 LRADNDPTAPLRGAIKKPKAKHKPSYNLDEFGKLCRAIWPKEGAIAYRITEIAIRLLALT 239 Query: 246 ITRPAEAAEARWDEIDFNASE--WKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 + R E ARWD+ D + E W IP +MK H VPLS A+ +L ++ L+G R Sbjct: 240 MARTVEVRSARWDQFDLESEEPTWTIPGEKMKRGVTHLVPLSSQAVELLRELEGLTGNRP 299 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 + FP+ +P +PM++ T+N L+R G GG+ H R+ AST LN GF D +E LAH Sbjct: 300 YCFPNLRQPTEPMSATTINRVLERLGYGGLFSGHAFRTTASTLLNNYGFDGDWVERQLAH 359 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 ++N+ R +YN ++YL QRR M+QWWADLV Sbjct: 360 TEENKSRASYNHAEYLYQRRIMLQWWADLVDTLR 393 >UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea psychrophila RepID=Q6AR70_DESPS Length = 399 Score = 353 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 129/400 (32%), Positives = 212/400 (53%), Gaps = 14/400 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L +++ AK +L DG GL+ + SG K W +RY L ++ G YP +S Sbjct: 4 LKALQVRNAK---DPCRLSDGLGLSFEVTKSGVKRWLYRYR--LDDKQQMCVLGRYPELS 58 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRN-------SQEAKTNTFLLVAERWWNVKKT 120 L ARK+ E++ L+ + +P ++ + + ++ ++ +F +A W K Sbjct: 59 LEQARKIHREARALVREGCNPARERRRKKQEVISKEKAERDDRSKSFEYIALEWIENNKE 118 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 S + + + SL ++F A G+ + I +++ ++ ++ RG+LE VR++ QR N Sbjct: 119 SWSPSHQQAVLASLRNNVFSAFGNTPVDTITPPDVLRTIRAIENRGSLEIVRKVLQRTNA 178 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMR-TASISMSTRCLF 239 V YA TG P+ ++ A + ++MP++ +L QL+ + I ++T+ Sbjct: 179 VFRYAIQTGRATYNPAADMQGALKAKTVEHMPAVFDSELAQLLQDISSNQKIHVTTKLAI 238 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 + LT R E ARW E++ + +EW IPA RMKM R H VPLS ALAIL L Sbjct: 239 QFTALTACRGGEVRNARWQEVNLDTNEWHIPAERMKMRRAHIVPLSIQALAILHRAGALW 298 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIE 358 G F+FPS ++PM+ + A + G G HG RS S+ +E GF +VIE Sbjct: 299 GEDGFVFPSIRDRSKPMSDNAMGKAFRDMGYRGKATPHGFRSSFSSMAHEQSGFASEVIE 358 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +LAH +KN+V+ AYNR++YLEQRR ++QWW + + ++ Sbjct: 359 KSLAHEEKNKVKGAYNRAEYLEQRRELLQWWGEKLHRLEN 398 >UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M393_9ENTR Length = 420 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 134/418 (32%), Positives = 218/418 (52%), Gaps = 20/418 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL D I+ A ++ Y+L D GL L+I +SGS+LW FR+ ++ + +FG YP + Sbjct: 2 PLNDHIIQNAISQEKPYRLADSLGLYLVISNSGSRLWYFRFR--FNGKQNRIAFGPYPQI 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +++DAR+ R ++ LL I P EH+K + S +KT TF +A W + +E + Sbjct: 60 TIADARRKRDAARKLLTSGISPSEHRKSEKAAS--SKTRTFQHIALAWHSSCLNRWSEGH 117 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A+ I L+R +FP +G I +I+ L + ++ V +G + R+ Q + ++M ++ Sbjct: 118 ANKILVCLQRYVFPYVGKKDIAKIETFHLAELIKEVNNKGVHDVASRIRQYLTKIMRHSV 177 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 GLI P++++ ++ P++ L +L+ + R L Sbjct: 178 QQGLIHYNPALDLEDIITPVVVQHYPALPLRSLSELLIKIDDYKGQELIRLALELSLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARWDE + W IPA R KM +H VPLSD A+ ILE Sbjct: 238 LRASELRFARWDEFNMKIHIWTIPAKRKAVDGVRFSDRGSKMKEEHLVPLSDQAMKILER 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEG- 351 +K +SG EF+F S N+PM+ T+N AL+ G + +HG R++A +ALNE G Sbjct: 298 IKKISGESEFVFHSIRNLNRPMSENTINKALRVIGYCTKNDVCAHGFRTMACSALNESGK 357 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 + D IE ++H D+N VR AY ++++YLE+R MMQWW+D + + ++ Sbjct: 358 WSKDAIERQMSHKDRNNVRAAYLHKAEYLEERFEMMQWWSDYLSTTREKYVAPYIFAR 415 >UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_ACIB5 Length = 427 Score = 351 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 132/406 (32%), Positives = 203/406 (50%), Gaps = 4/406 (0%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL+DT + +P+ +Y+ DG+GL +K G K W FRY + + + G Y Sbjct: 25 KRRPLSDTVLANLEPESKEYRELDGEGLYFRVKPDGKKAWLFRYKKA-DGKWSWLGIGTY 83 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P +S + ARK E +++ +P ++E+ R E TF ++A W + K + Sbjct: 84 PELSGAGARKKAREIIKDISQGDNPIITKQERKRQELEQNNATFEVLAREWLDTKANTWV 143 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA-RGALETVRRLCQRINEVM 182 +D +LE+ IF G T IK + ++ +Q +G E V R+ ++ Sbjct: 144 KDTMTRNKGALEKHIFAIFGKRLYTSIKPIEWMNHLKGIQQHQGIYEQVNRVRAMCRDIY 203 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 +A+ TG ID P + K ++ K+NM + +LP L+ + + +M R Sbjct: 204 DFAKVTGRIDYNPLEGLQKFLQQGVKQNMSHVSEQELPALLRAINSYP-TMDVRMGLQLL 262 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 + RP E EA+W E D N W IPA RMK R+H VPL A+ IL +K Sbjct: 263 AMLFCRPTELREAKWQEFDLNQGIWNIPAERMKKRREHVVPLPRQAITILNELKTYETNS 322 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 E++FPSR ++P + AL+R G G HG R IAST LN GF IEAALA Sbjct: 323 EYLFPSRSDKSKPKSDTVFIMALRRMGYEGRQTPHGFRHIASTLLNNRGFDERHIEAALA 382 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 HV K+ V YN++ YL+ R+ M+QW+A+ ++ I+ +K Sbjct: 383 HV-KDGVAGVYNKAQYLDDRKIMLQWYANHLEEIADQRIIQFKKAK 427 >UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BVL9_9GAMM Length = 441 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 132/423 (31%), Positives = 218/423 (51%), Gaps = 22/423 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+KT PL+D++ AKP++ DY LYDG GL L I+ SGSK+W+F+Y R + + Sbjct: 1 MAKKTIPLSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRA-NGKDGLMTL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +PA+SL AR R E + LLA IDP E+ +++ ++ F +A W K Sbjct: 60 GNFPALSLKTARDKRRELETLLANGIDPIEY--SEIQKAKLDNKYNFESIAREWHTAYKN 117 Query: 121 --SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + A+ +++E +FP +G I IK L++ ++ ++ G E V++ QR+ Sbjct: 118 TGRWGTETAERALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRL 177 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 + +A + G I++ P+ + F + K+ P + ++LP+L + + + TR Sbjct: 178 TSIFAFAMSKGFIESNPAYGLQDIFILSKKTKHHPQLPLERLPELQAKLASDTGHPITRL 237 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLS 285 + L T R +E ARW E DF + W IP R KM H +PLS Sbjct: 238 CVEFALHTFARSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKTPHLIPLS 297 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--GVLVSHGLRSIA 343 + ALAI++ + SG + +FP P+ M+ T+N L+R G + HG R +A Sbjct: 298 NQALAIIKEIYKYSGHTQNVFPKNGDPHGFMSESTINKTLRRLGYDTNTEVCGHGFRGMA 357 Query: 344 STALNEEG-FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSI 401 AL + F D +E ++H ++N VR AY +++++LE+R+ M+ WW+ + SI Sbjct: 358 CAALIQSKLFQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLDVTKETSI 417 Query: 402 VLT 404 Sbjct: 418 SPY 420 >UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholderia ambifaria RepID=Q0BEM8_BURCM Length = 414 Score = 350 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 126/400 (31%), Positives = 205/400 (51%), Gaps = 7/400 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +I+ AK + +L DG+GL LL+K SGSKLW+++Y + + + G YP Sbjct: 2 PLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYR--IAGKENVFAIGEYPTT 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL AR R +++ L+ K + P ++E + TF V++ W K+ + TE + Sbjct: 60 SLQAARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERH 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 +I R LE D +P IG+ + I AH ++ ++ V+ RG+ +L Q ++ V YA Sbjct: 120 FGEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAV 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T D P+ + A KP ++ + ++L L + S T ++ Sbjct: 180 ITLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYK-SKRTTIAIRLLMMLF 238 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R E ARW+EID A+EW++P ++K R H VPL A+++L ++ + G R +I Sbjct: 239 PRTVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYIL 298 Query: 307 P--SRIKPNQPMNSQTVNAALKRAGLGG--VLVSHGLRSIASTALNEEGFPPDVIEAALA 362 P + M+ T+N AL + H R+ AST L+E G+ +V+E L+ Sbjct: 299 PILHSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLS 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 H DK+ R YN + YL +RR MMQ WAD + ++ ++ Sbjct: 359 HKDKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALT 398 >UniRef50_Q4K6S7 Site-specific recombinase, phage integrase family n=4 Tax=Proteobacteria RepID=Q4K6S7_PSEF5 Length = 413 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 197/408 (48%), Gaps = 4/408 (0%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL DT + +P+ +Y+ DG+GL +K G K WQ RY RP G Y Sbjct: 7 KRRPLADTTLTGLEPEAKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNW-AWMGLGGY 65 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK-TSV 122 P VS + AR+ AE + ++ IDP E ++ AKT TF A+ W K+ + Sbjct: 66 PEVSGALAREKAAELRKTISSGIDPLEQKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGL 125 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + I L++DI PA+GD + EI + ++AR A + IN++ Sbjct: 126 APSTLNKIRTYLDKDILPALGDKPLDEITRTDCAELQASIEARDAHNVAEKCRTWINQIF 185 Query: 183 IYAQNTGLIDAVPSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 A GL + P + A + P+ + P + +L + + ++ ++ R Sbjct: 186 GRAIGLGLTENDPGSRLRDIAAQAPKTQQHPHLLEPELGEFLTALKNTPSRLTARTAAWL 245 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + T +RP A W E D + + W PAA+MKM RD PL A+A L+ + L+G Sbjct: 246 CIWTASRPGMVRLAEWKEFDLDKATWTTPAAKMKMRRDFVCPLPHQAIAALKELHCLTGR 305 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 ++FP N ++ T+N G G LV HG R AST L E G+P + +EA L Sbjct: 306 SRWLFPGVGAKNPTISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQL 365 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 AH ++ + YN++ YLEQR MMQW+AD + A + G ++ K Sbjct: 366 AHKEE-GISGVYNKAQYLEQRITMMQWYADHLDALEQGKVIQGQFGKA 412 >UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQ25_BRASB Length = 407 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 154/396 (38%), Positives = 219/396 (55%), Gaps = 8/396 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDT+ + AK + +L DG GL LLI G+K W+ Y ++ + G YPAV Sbjct: 2 PLTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRLAYRWH--GKQRTLALGVYPAV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 L +AR R ++K +A DIDP ++E+ R ++ A NTF VA W K + + Y Sbjct: 60 GLIEARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHENWKDARSPYY 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A I R LE D FPAIG SI ++ L+ ++ V+ RG ET RRL Q + ++ +A Sbjct: 120 AAQILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRFAI 179 Query: 187 NTGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG PSV++ A + + ++ +LP + + + S T+ LT Sbjct: 180 VTGRAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKLALKLVTLT 239 Query: 246 ITRPAEAAEARWDE---IDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 R E +W+E +D N++ W+IPA RMKM +H VPLS A+A L ++ LSGG Sbjct: 240 FLRTTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRELRTLSGGS 299 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 IFPS K + M+S T+ AL R G G +HG R++AST LNE F D IE L Sbjct: 300 PNIFPSPGKGD-CMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNRDWIERQL 358 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 +HV++NEVRRAYN ++++ RR MMQWWAD + A Sbjct: 359 SHVERNEVRRAYNAAEWMPDRRRMMQWWADHITALA 394 >UniRef50_B9D1P3 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D1P3_WOLRE Length = 395 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 127/402 (31%), Positives = 205/402 (50%), Gaps = 13/402 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + PLTD EI+ KPKD Y+ DG GL + + SG K + Y P + + + Sbjct: 1 MPKIPIPLTDREIRGLKPKDKIYKKCDGRGLYIFVDPSGRKYFALEYKSPADNKIKRLNL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +P SL+ AR+ R + + + ID S+ + F +A+RW +K Sbjct: 61 GDFPEFSLAMAREERFKLEQKVRDGID-------VKHESEINEQANFKKLAQRWLEIKAA 113 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SV + + R LE +P + SIT+I +++ ++ ++A+G+LE ++RL +N+ Sbjct: 114 SVEPNTLNRDKRLLEMYAYPFFENRSITDITVTDVIEILKKIEAKGSLEMMKRLYSLLNQ 173 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCLF 239 + A + + S+N F+K ++KN ++ + + L ++ S + T+ Sbjct: 174 IWQSAYYIAPNNVIASINYRFTFKKVKEKNYATLTKNADIKALWQSIDEYSGDIRTKYAL 233 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 + +LT RP A+W+ IDF+ IPA MKM T+PLS AL +L+ K + Sbjct: 234 KFAVLTALRPFNIRSAKWEYIDFDEGVISIPAGDMKMREAFTLPLSRQALELLKEYKGYN 293 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE----EGFPP 354 + ++F S + M+ T+N AL+R G +VSHG R++ ST NE G Sbjct: 294 LDQIYLFGSLYGSARYMSENTLNVALRRMGFSKDEIVSHGFRAMFSTVCNENIDAHGLNF 353 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 D+IE LAH +++R AYNR+ L Q R MMQWWAD + A Sbjct: 354 DIIEKCLAHKGTDKIRAAYNRAQNLAQMRAMMQWWADYLDAL 395 >UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriaceae RepID=Q0P7K9_ECOLX Length = 423 Score = 349 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 133/406 (32%), Positives = 223/406 (54%), Gaps = 22/406 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D +I++ KP D +++ D GL LL+K GS+LW +Y + + ++ + GAYPAVS Sbjct: 3 LNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPAVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR+ R + +LA +I+P + + + F VA W + KK +++ A Sbjct: 61 LSDARQQREGIRKMLALNINPAQQRAA--ERGSRMQEKMFKSVALEWHSSKK-KWSQNTA 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + L R +FP IG + +TE+K+ ++ ++ ++ +G LE R Q ++ +M YA + Sbjct: 118 DRVLARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMRYAVH 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS-ISMSTRCLFMWQLLTI 246 GLI+ P+ N+ P +++ P++ ++LP+L+ + + TR + L Sbjct: 178 QGLIEINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW EI+F W IPA R KM H VPLS+ ++IL+ Sbjct: 238 IRSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKR 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEG- 351 +K +SGG E +FP P +PM+ T+N AL++ G + HG R++A +AL E G Sbjct: 298 IKEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGL 357 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAA 396 + D +E ++H ++N VR AY ++++++E R MMQWW+D + Sbjct: 358 WSQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMC 403 >UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY10_HALNC Length = 427 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 132/421 (31%), Positives = 204/421 (48%), Gaps = 29/421 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IKA KP+ Y++ D GL L + +G KLW+ Y +R + G YP V+ Sbjct: 3 LTDTAIKALKPESKPYKVTDEKGLYLFVTPAGGKLWRLDYR--FEGKRKTLALGGYPDVN 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQK-------------------EQVRNSQEAKTNTFL 108 L AR R E++ L+A DP E +K E + + EA +F Sbjct: 61 LKQARVYRDEARQLIANGTDPAELRKAEKTTITESRREEAEAVKIEAMIQAGEALPGSFE 120 Query: 109 LVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGAL 168 + + W N+ +E Y + + L+ +++P +G + ++ A ++K +Q ++ARG + Sbjct: 121 EIGDEWVNMYLADKSEKYRNKVINRLKAEVYPYLGRAPVADVTAPMVLKVLQRIEARGII 180 Query: 169 ETVRRLCQRINEVMIYAQNTGLID--AVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHT 225 E+ R+ Q I +++ YA TG + V P+ KN + P + L+ Sbjct: 181 ESAHRVKQNIGQILRYAIATGRRELFDVTMALNKAIAPMPKDKNHAAPTEPKDIAPLLRI 240 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 M S TR R E +W +IDF EW+ A+ K ++H VPL+ Sbjct: 241 MAGYRGSPITRAALTIAPCVFVRIGELRHMQWADIDFETFEWRYTAS--KTGQEHIVPLA 298 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--GVLVSHGLRSIA 343 +A L ++PL+G ++F +PM+ TVN ALKR G+ L HG R++A Sbjct: 299 RQVVAALIELQPLTGHSRYVFTGARSDTRPMSENTVNGALKRLGIDTQTELTGHGFRAMA 358 Query: 344 STALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 T L E F P+VIE LAH ++ + RAYNR+ +LE RR MMQ WAD + V Sbjct: 359 RTVLEEVHNFRPEVIELQLAHAVRDPLGRAYNRTKHLETRRKMMQVWADYLDELRDSKNV 418 Query: 403 L 403 + Sbjct: 419 I 419 >UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria RepID=Q2N8A1_ERYLH Length = 409 Score = 348 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 131/409 (32%), Positives = 214/409 (52%), Gaps = 8/409 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD I+ AK Y+L D GL LL++ +G KLW+ +Y + + K + G YP + Sbjct: 3 LTDVGIRKAKAGPKAYKLSDSSGLFLLVERTGGKLWRMKYR--IDGREKKLAIGRYPEIG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR+ R ++ LA+ DP ++ Q ++ N F +A + +K + +A Sbjct: 61 LAEARRRRDAAREQLAQGKDPSREKQRQKARAKLGAENNFASLAAEFCEKRKHDGSRAWA 120 Query: 128 DDIWRSLERDI---FPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + E + +IG + I +I+ ++ AV+ ++++G LE+ +R Q V Y Sbjct: 121 PATAKRCEYLLSVLNSSIGHLPIADIEPADILTAVRRIESKGKLESAKRTLQLAGSVFRY 180 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 A T + + P+ ++ A P + + + P +L+ + T+ Sbjct: 181 AVATARLKSDPTRDLRGALMNPTVTHYGAVLDPAGAGELLRAIDGYEGQPITKLAMQLAP 240 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 RP E A W EIDF+ + W IPA++ KM +DH VPLS A+AILEM L+G Sbjct: 241 HVFVRPGELRHAEWSEIDFDEALWTIPASKTKMRKDHLVPLSRQAIAILEMAHRLTGPDG 300 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 ++FPS +PM+ T+NA L+R G + +HG R++AST LNE G + PD IE AL Sbjct: 301 YVFPSVRTRKRPMSDNTINAGLRRLGYATDEMTAHGFRAMASTLLNESGKWNPDAIEGAL 360 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410 AH D ++VR AY+R + ++R MM+WW+D + G+ V+ + R Sbjct: 361 AHGDSDKVRAAYHRGAHWKERVKMMKWWSDYLDQLREGAEVVPIKAAKR 409 >UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria RepID=C6XEE3_METSD Length = 406 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 143/404 (35%), Positives = 213/404 (52%), Gaps = 10/404 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRP---LTKQRT 56 MA+ LTD + A + +L DG GL L + ++G+K W+FRY+ K+ Sbjct: 1 MAK---NLTDLACRKATCEGKTLSKLSDGGGLYLWVYANGAKYWRFRYFIHVEGGKKKEM 57 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 S G YP VSL+DAR + + L+ IDP +K ++ ++ +TF +A W+ Sbjct: 58 SLSLGVYPEVSLNDARVEARKYQGLVDNGIDPATAKKAKLLQTKAEAGDTFAEIAREWYR 117 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + TE +A DI R +E ++ P I I E++A +K ++ VQ RGA RL Sbjct: 118 KMMPTWTETHARDIERRIEINLIPFIPQKPIAELEAVDFLKPLEKVQERGATHLSHRLLI 177 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS--ISMS 234 I +V YA G + +G A KN P+IRP++LP+LM + M Sbjct: 178 NIRQVYKYAIAKGKCKYDVTPGLGNALIPHVAKNQPAIRPEELPKLMTDIADYHKLGEMK 237 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 + R E RWDE+D+ A+ W++P RMKM+RDH +PL+ ILE Sbjct: 238 VQLGLQLMAHVWLRTRELTFGRWDELDYEANLWRVPGERMKMDRDHLIPLTPQVKVILER 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPP 354 ++ L+ G E+I P R P+++ T+ AL R G + HG RS+AST LNE GF Sbjct: 298 LRVLARGSEYILPGR-NHLTPVSNNTLLYALYRLGYKSRMTGHGFRSVASTILNESGFNA 356 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 D IE LAHV +N VR AYNR++Y+++RR MM WW++ + + Sbjct: 357 DAIERQLAHVPENAVRAAYNRAEYIDERRKMMLWWSEYLDKCTA 400 >UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholderiales RepID=A1WLK0_VEREI Length = 421 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 132/401 (32%), Positives = 206/401 (51%), Gaps = 14/401 (3%) Query: 8 LTDTEIKAAK-PKDA-DYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD K A P D +L D GL L + SGSK W ++Y + + + G YP Sbjct: 2 LTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYR--FDGREKRLALGVYPD 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L DAR R +++ + +DP ++ + +++ TF +VA + KK S + + Sbjct: 60 VPLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLE 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA LE+DIFP +G + + +I A L++A++ V+ARGA E L + + Y Sbjct: 120 YARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRYG 179 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 TG D + ++ A K+M +I P ++ +LM +R ++TR L Sbjct: 180 IATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSAL 239 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAILEMMKP 297 RP + W+E+D AS WKIP+ +MK R H VPL+ A+A+L ++P Sbjct: 240 LFQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQP 299 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE-EGFPPD 355 L+G ++FP+ + P +PM+ TV AL+R G + HG R++A T L E D Sbjct: 300 LTGRGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSD 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 VIE LAH + AY+R++++ QR+ MMQ WAD + A Sbjct: 360 VIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDAL 400 >UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaproteobacteria RepID=Q167M4_ROSDO Length = 409 Score = 347 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 143/395 (36%), Positives = 212/395 (53%), Gaps = 5/395 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PL+D +I+ K +D Y++ D D L +L+K +GSKLWQ +Y L + S GAYPAV Sbjct: 16 PLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYR--LDGREKTLSIGAYPAV 73 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL ARK R ++ ++A DP E ++EQ R +EA TF + + + ++ Sbjct: 74 SLQQARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKA 133 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D + G IT I A +++ ++ V+A+G ET RL RI V YA Sbjct: 134 TLDKTAYHLKLANHDFGKKPITAITAPMILRTLRKVEAKGNYETAHRLRARIGSVFRYAV 193 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 +GL + P+ + A +P +++ +I P L+ + ++TR L Sbjct: 194 ASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQVTTRIALQLLALL 253 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E A+W E D W IPA +MKM RDH VPL+D A+ +L ++PL+G E++ Sbjct: 254 AQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGESEYL 313 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 FPS ++PM+ T+NAAL+R G G + +HG R+ ST NE G + PD IE ALAH Sbjct: 314 FPSLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERALAH 373 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 ++NEVRRAY R + E+R + WWA + S Sbjct: 374 EERNEVRRAYARGAHWEERVKLSDWWAGRLDDFRS 408 >UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobacteria RepID=B8GNQ7_THISH Length = 422 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 128/401 (31%), Positives = 205/401 (51%), Gaps = 8/401 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA L+ +++ + Y L DG L L + SGSKLW++RY L + + Sbjct: 1 MA--MNLLSARKVETIPSQKEPYWLKDGGSLFLYVTPSGSKLWRYRYR--LGGKPAIYAI 56 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL AR R ++ L+ K + P ++ + E NTF VA RW Sbjct: 57 GKYPQVSLEAARTERDRARELVKKGVHPVVEKRVNISTQLEKNENTFEPVARRWMASN-V 115 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +E YAD + R+LE D+FP +G + ++ I+ L ++ V RGA + Q ++ Sbjct: 116 QWSEGYADQVKRTLENDVFPKVGKLPVSSIRTAHLRPVIKDVAERGAPTVAILIRQLCSQ 175 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + YA L D+ P+ + ++ ++P+ ++ P + ++P+ + + A T Sbjct: 176 IFAYAAGEELCDSDPTALLKRSVKRPRVRHHPPLPWQEIPKFLSRVDDA-GYRVTVIALR 234 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 LT R AE +A W E D +++ W +PA RMKM H VPLS A+ +L+ + L+G Sbjct: 235 LMALTYVRTAELRKAHWSEFDLDSAMWTVPAGRMKMRDPHIVPLSKQAIVLLKELHTLTG 294 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 G + +FP KP M++ T+N L+R G GG SHG RS A+T L +P + ++ Sbjct: 295 GGKVLFPGFRKPGTVMSATTLNKVLERMGYGGQFSSHGFRSTATTLLGLLSYPENRVDLQ 354 Query: 361 LAHV--DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 LAH K+ R Y+ + Y+ R+ +MQ WAD++ A G Sbjct: 355 LAHSKRKKDSSRAPYDHTKYIASRKIIMQDWADILDAMARG 395 >UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL52_9BACT Length = 378 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 210/393 (53%), Gaps = 21/393 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ EIK A P++ Y + D +GL L I +G K W+ R+ + K + G YP +S Sbjct: 3 LTNVEIKRATPREKRYTMRDSEGLWLEITPAGKKTWKVRFK--AQGREIKHTLGRYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK-TSVTEDY 126 L +AR R E ++ L + TF +AE W+ + T + Sbjct: 61 LKEARLKRDEIRLELVN--------------HKSVPEGTFKALAEEWFERQVVPVRTHGH 106 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A I L+R I P +GD +I A L+ ++ ++ +G +ET R+ Q + +V+ Y Sbjct: 107 ARTIRSRLDRLILPYLGDKPPADIDAPELLAILRRIEDQGHVETAHRVSQIVGQVLRYGI 166 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG + ++ A + ++ P++ P ++ LM ++ S S+ RC ++Q+ T Sbjct: 167 ATGQARHDITADLKGALIPRKPEHFPTLTDPKKIGGLMRAIQAFSGSVVVRCAMLFQIYT 226 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E +A W EID + WKIPA RMK R H VPLS A+ +LE ++PL+GG E I Sbjct: 227 AVRPGEMRKAEWKEIDGD--LWKIPAERMKKRRPHLVPLSSQAIGVLEEIRPLTGGGELI 284 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 FPS +P++ TVNAAL+R G L HG R++ ST NE +P +VIE LAHV Sbjct: 285 FPSVRSKTRPISDMTVNAALRRMGYAQNELTGHGFRAMFSTIANECQWPSNVIELQLAHV 344 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 DKN VR AYN ++ L++RR ++QWW D + Sbjct: 345 DKNSVRAAYNHAELLDKRRELLQWWGDWLDGVR 377 >UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetobacter RepID=C6RSU9_ACIRA Length = 426 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 212/413 (51%), Gaps = 18/413 (4%) Query: 1 MARKTKPLTDTEIKA----AKPKD-----ADYQLYDGDGLTLLIKSSGSKLWQFRYYRPL 51 M ++ LTD++IKA K + D +L DG GL LLI+ +G+ +W+F Y RP+ Sbjct: 1 MPKQVISLTDSKIKAFLRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPV 60 Query: 52 TKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVA 111 +K+R + G YPA+SL+ AR+ R + + LLA+ DPQ ++ + + TF VA Sbjct: 61 SKKRNTMTVGNYPAMSLAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVA 120 Query: 112 ERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV 171 E + K + E E+ ++ +G++ I++I L K ++ + +G +E+ Sbjct: 121 ELY--KSKQRLAEATVKRNDGIFEK-LYRDVGNMPISDITPRDLAKVIEKDENKGHIESA 177 Query: 172 RRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTAS 230 R+ + ++V +A GL + + ++ + +K + ++ P L+ + Sbjct: 178 MRIRSKASQVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDIDHYE 237 Query: 231 ISM-STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM--KMNRDHTVPLSDG 287 + + L R E A+W +I+F + W ++ K DH VPLS Sbjct: 238 SQLVHVKLALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQ 297 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTA 346 A+AIL+ + +F+FPSR ++P++ ++N AL+R G G + HG R+IA T Sbjct: 298 AIAILKEALNFTNNSDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAIARTL 357 Query: 347 LNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 L+E FP D+IE LAH ++ RAYNR+ +L++RR MMQ W+D + Sbjct: 358 LDEVLEFPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDYCDELKA 410 >UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria RepID=B1Y3M2_LEPCP Length = 433 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 143/434 (32%), Positives = 211/434 (48%), Gaps = 29/434 (6%) Query: 1 MARKTKPLTDTEIKAAKPKD----ADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 MA T L D I+AA + A +L DGDGL L ++ +GS W++RY + Sbjct: 1 MA-ATNNLDDKSIRAAIKRAMKAQAGERLTDGDGLRLDVQPTGSAWWRWRYR--FGGKEG 57 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN----------- 105 S G YP SLS AR R E++ LA I+P E +K+ Sbjct: 58 MLSLGTYPDTSLSAARGRRDEARERLAAGINPSEARKDDKAAQALKAEAARLAAAGLPGP 117 Query: 106 -TFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA 164 TF A W S +E +A + L D+FP IG ++ E+ L+K + ++A Sbjct: 118 GTFEHAAREWHARMAPSWSEGHAGKVLALLVNDLFPFIGTSALAELTPPELLKHARRIEA 177 Query: 165 RGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLM 223 RGA+ET R + V + G D+ P+ ++ A P ++ +I P +L +L+ Sbjct: 178 RGAVETAYRALKAAGAVFRHGVQNGYCDSDPTRDLKGAIVLPVPEHRAAITDPARLGELL 237 Query: 224 HTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-------M 276 + + R L RP E +A W E D +A+ W IPAARMK Sbjct: 238 RAIDGYQGTPVVRSALALAPLVFLRPGELRKAEWAEFDLDAAVWTIPAARMKGRLKAKLN 297 Query: 277 NRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLV 335 DH VPL+ A AIL ++PL+G +++FP+ + P++P++ V +AL+R G + Sbjct: 298 GPDHVVPLAPQAAAILRDLQPLTGAGKYVFPNPLTPDRPLSDNGVLSALRRMGFDKDEMT 357 Query: 336 SHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 HG R+ A T E P V+EA LAHV + + RAYNR+ YL+QRR MM WAD + Sbjct: 358 GHGFRATARTIAAERLKIDPVVLEAQLAHVVADALGRAYNRTQYLDQRRDMMTRWADYLD 417 Query: 395 AADSGSIVLTHLSK 408 G+ V+ SK Sbjct: 418 RLRKGAEVVDLTSK 431 >UniRef50_B6BKY5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKY5_9PROT Length = 400 Score = 344 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 143/406 (35%), Positives = 210/406 (51%), Gaps = 15/406 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR KPLT+T+IK AK K+ Y L DG GL L + +G K W+FRY + K S Sbjct: 1 MARTVKPLTETQIKNAKAKEKTYILSDGAGLYLEVNINGGKWWRFRYKY--NDKIKKVSL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKD-IDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G YP +L++AR+ R E++ +LA D DP K V +E TF AE + Sbjct: 59 GVYPDTTLANARRKRDEARNILANDNRDP--FIKIVVHKKEEVVQKTFQEWAEWYITEIS 116 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 T +++ + + ++D++P IG + +IKA ++K + ++ RGA+E+ R+ IN Sbjct: 117 TELSDTHITRTVKGFKKDVYPIIGSKRMNDIKARDIIKIMHIMKERGAVESARKTFSSIN 176 Query: 180 EVMIYAQNT--GLIDAVPS--VNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMS 234 V A + ID P+ + +G Q N P I P +L L+ ++ + S Sbjct: 177 RVFAKALSNFPDEIDRNPTADIKLGDILGAKQTTNYPIITEPKELATLLKAIKEYTGDTS 236 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 T T RP ARWDEIDFN +W IPA++MK ++ VPLS + +L+ Sbjct: 237 TILALTMIAHTFVRPINIRLARWDEIDFNTKQWVIPASKMKTKKELIVPLSKQVIELLKE 296 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-F 352 K +FPS PM+ + AL+R G +V+H R I ST +E+G + Sbjct: 297 AKS---DSALVFPSIRSKTSPMSDNALVGALRRMGYSREEIVAHSFRGIFSTIAHEKGIY 353 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 DVIE LAH + V +AYNR+ YLE+R MMQWW+D + S Sbjct: 354 AHDVIETQLAHTVGSSVSQAYNRAKYLEERTKMMQWWSDYLTTLPS 399 >UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRV8_BORPD Length = 402 Score = 344 bits (881), Expect = 6e-93, Method: Composition-based stats. Identities = 136/397 (34%), Positives = 213/397 (53%), Gaps = 10/397 (2%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 + L+D +K A+PKDA Y+L DG GL LL++ +GS+LW++++ L + + G YP Sbjct: 8 RALSDRAVKNARPKDAPYKLADGGGLHLLVQPNGSRLWRYKFR--LGGKEQVFAIGRYPD 65 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQE----AKTNTFLLVAERWWNVKKTS 121 V L++AR+ ++ L+A + P +++ E AK TF V + W + Sbjct: 66 VGLAEARERHLAARRLVADGVSPTAQRRDDRARMAEDAARAKAGTFKAVLDSWKATPARA 125 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 + R ++R + P +G + EI L ++ V A E R L +N + Sbjct: 126 LAPATIRQRDREIDRYLEPKLGARPVGEITRRELADLLKTV-ATDTPEVARNLRTHMNSI 184 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 +A + GLI P+ +A ++ + P++ D+L L+ ++ ++ +T+ F Sbjct: 185 FEHAVDVGLIAGNPT-PGPRALPARKQTSHPAVAMDELGALLASIDASACQPATKAAFRL 243 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LLT R E RWDEID +A EW IPA RMK H VPLS A+ +L ++ SGG Sbjct: 244 LLLTACRKLEITSGRWDEIDLDAGEWLIPADRMKTRTAHWVPLSRQAVELLRAVRAHSGG 303 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAA 360 +++FP R KPN PM+ +N L+R G + HG RSI ST N + G DVIE Sbjct: 304 -DYVFPHRDKPNTPMSPTALNEMLRRVGYRREMTVHGTRSIFSTWANAQPGANVDVIERC 362 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 LAH +++VR AYNR Y ++RR ++Q WAD++ AA+ Sbjct: 363 LAHAPRDKVRAAYNRHAYKDERRALLQSWADVLDAAE 399 >UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria RepID=Q5P707_AZOSE Length = 415 Score = 343 bits (879), Expect = 8e-93, Method: Composition-based stats. Identities = 120/392 (30%), Positives = 197/392 (50%), Gaps = 3/392 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD + +A K D Y++ D GL L ++ SG+K W++R+ L ++ + G YPA+ Sbjct: 2 LTDAKCRAVKATDKTYRVADSHGLCLEVRPSGAKFWRYRFR--LADKQNMHALGEYPAMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L DAR+ R E++ L+ K I+P H+ + A +TF V W + + +Y Sbjct: 60 LQDARRARDEARELVRKGINPSHHRGLEKAERILALGSTFETVTAEWIERNRPDWSANYI 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + + D+FP IG I ++KA ++ ++ V+ R + + + V +A Sbjct: 120 RQVRARMAGDVFPEIGQYPIADLKAAHVLAMLRKVEKR-SPTQAALVKTWVGGVFRFAVV 178 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 L + P+ + +A + Q + +R D++ + + A ++ + T Sbjct: 179 EQLREDDPTFPLRRAVKPTQVNHHAILRNDEIGAFLRAIAAAPGEVTVKEAVGLMWATAC 238 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E ARW ID +A W IP RMK ++H V L+ A+ IL ++ +G E +FP Sbjct: 239 RINEVTGARWAGIDLDAGLWTIPPGRMKAKQEHVVTLTRQAVEILRRVQVHTGTLEHVFP 298 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 R +PM+ + V +RAG G HG+R ST N G+ DVIE LAH ++N Sbjct: 299 HRSDRKRPMSGEAVRDLFRRAGYAGKFTPHGVRGTFSTIANGAGWRADVIELCLAHQERN 358 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 ++RRAYN + L++RR ++QWW DL A G Sbjct: 359 QIRRAYNHAQLLDERRELLQWWGDLSDQAKRG 390 >UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V414_SPHWW Length = 417 Score = 343 bits (879), Expect = 9e-93, Method: Composition-based stats. Identities = 129/401 (32%), Positives = 205/401 (51%), Gaps = 7/401 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLT +I AAK + +L DG GLTL+++ SGSK+W+ +Y ++ G +P V Sbjct: 2 PLTHIQIAAAKASNGALKLSDGRGLTLVVQPSGSKVWRLKYRYE--GKQKTLHLGHWPKV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +S+AR R +++ L+ + DP ++ + N+F VAE W + Sbjct: 60 GISEARIRREDARKLIEEGTDPALVKRFGPVAAKVKIVAGNSFRAVAEEWLEKCEREGLS 119 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + R L +PA+G I I+ + ++ ++A G LE+ RRL ++ + + Sbjct: 120 QVTLNKIRWLLDKAYPALGSKPIEVIRPLDALAVLKKLEAEGILESARRLRSVLSRIFRF 179 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQL 243 A TG I+ + ++ A P+ KN+ +I + L+ + S T Sbjct: 180 AVATGRIERDVAADLRGAIATPKGKNLAAITTAREAGVLLRAIENYSGHEITAIALECSA 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 RP E +A W E+D + + W IP + KM R H VPLS + L + L+GG + Sbjct: 240 HLFVRPGELRQAEWPELDADEAIWAIPPEKTKMRRPHWVPLSRQMMEKLHRLHDLTGGGK 299 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 ++FP + PM+ TVN AL+R G G + +HG R++A+T LNE G + PD IE L Sbjct: 300 YLFPCLGNDDMPMSENTVNLALRRLGFGQDQMTAHGFRAMAATLLNESGQWHPDAIERQL 359 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 AH++ NEVRRAY R +Y +R MMQWW+D ++ +V Sbjct: 360 AHIETNEVRRAYTRGEYWPERVRMMQWWSDHIEELRRAPLV 400 >UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7HXY0_THIIN Length = 392 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 136/394 (34%), Positives = 203/394 (51%), Gaps = 15/394 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT + AAKP++ Y+L DG GL L + +G K W+ Y L ++ +++G YPA++ Sbjct: 3 LTVKAVDAAKPQERPYKLTDGGGLYLFVAPTGLKSWRANY--ELNGKQRTRTYGRYPAMT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE-DY 126 L+ AR+ ++K A+ TF + E+W +K S++ + Sbjct: 61 LAQAREAHTQAKSTPAE---------AATVTPIAKVAPTFKAITEQWLKIKLPSLSNGKH 111 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + +LER +PAIG + I +I LV+ VQ VQ G +ET R+ RI V YAQ Sbjct: 112 QGQVAGTLERFAYPAIGKLPIDQIPRTKLVEVVQAVQKGGRVETAHRVAGRIAAVFDYAQ 171 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKN-MPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + G I++ + + + + + K M SI P + L+ + TR LT Sbjct: 172 DVGYIESHGAAGLVRVLQPRKVKKPMASIPPGEAGALLAAIDGYE-EPVTRLGLQLLALT 230 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E RW E+ + + W +PA RMK H VPLS A A+LE ++ L+G R + Sbjct: 231 FVRVGEMRGMRWSELREDGTVWVVPADRMKAGLPHVVPLSQQARAVLEQLRVLTGDRNLV 290 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALAHV 364 S ++P ++ T AL R G G + +HG R++AST LNE GF DVIE LAH Sbjct: 291 LDSPLRPGHALSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHR 350 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + + VR AYNR+ YL+QRR +MQWWAD + Sbjct: 351 ETDTVRAAYNRAQYLDQRRGLMQWWADWLDRQRE 384 >UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46Z79_RALEJ Length = 418 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 139/405 (34%), Positives = 198/405 (48%), Gaps = 10/405 (2%) Query: 1 MARKTKPLTDTEIKAAKP-KDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M ++ PL D + + AK +L DG GL L + SG+K W+ +Y RP +K + Sbjct: 1 MPKRILPLADLQCRQAKYSTAGGNRLRDGGGLYLELLPSGAKKWRMKYQRPGSKSENLLT 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG YPAV LS AR+ R E++ LA DP + EA NTF VAE W + Sbjct: 61 FGDYPAVGLSAARERREEARAQLAVGTDPALARDLAKATVAEAARNTFRAVAEEWLKHRH 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + + YA + LERD++P +G I I L+ + ++ARGA E RR Sbjct: 121 DTWSASYAQKTKQLLERDLYPDLGQHPIASITPAFLLTVARKIEARGAYEMPRRALVTAG 180 Query: 180 EVMIYAQNTGLIDAVPSV-NIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 ++ YA TG S + + +P K+ P + QLP L+ + + T Sbjct: 181 QIFQYAIGTGRASIDASAGMVAQLKPRPPVKHYPHVADTQLPDLLQRIDRYTGRPETIAA 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM-------NRDHTVPLSDGALAI 291 +LT R E A W E+D +EW +P+ RMK H VPLS +A+ Sbjct: 241 VKLAVLTFIRGGELRYAEWSELDLEKAEWHVPSGRMKGRLWHKLSGTPHVVPLSRQTIAL 300 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG 351 LE +K +G +FP + +P+ + +N G G HGLR +AST LNE G Sbjct: 301 LEDLKQYTGHYALLFPGAVSVLKPVTGEAMNKVFHSIGFKGQQTVHGLRGLASTLLNESG 360 Query: 352 -FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 F P VIEA L+H + N+ AYN + YL +RR +MQWWAD + Sbjct: 361 LFDPRVIEAQLSHKETNKTIAAYNHAKYLPERRRVMQWWADYIDQ 405 >UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QA94_PSYCK Length = 413 Score = 340 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 120/401 (29%), Positives = 200/401 (49%), Gaps = 11/401 (2%) Query: 7 PLTDTEIKAAKP------KDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 PLT T I +P + DG+GL L ++ +G K W Y ++ + Sbjct: 2 PLTHTVINKLQPSSTSIDTKRPDKHSDGNGLQLWVRYTGVKSWISAYRW--QGKQQTLTI 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL +AR+ E K L+A ++P++H+KE + + + N F +A+ W+ +KT Sbjct: 60 GTYPVMSLQNARQRNIEIKRLIADGVNPKDHKKE--QQASQDGLNIFDNIAQSWYAERKT 117 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + E + + RD+ P+IG +I +I A ++ + V++RGA E RR + + + Sbjct: 118 YLAESTFTRNYSAYMRDVKPSIGQKNINDITAPDILAIGKAVESRGANEMARRTIREVGQ 177 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A GL P+ ++ +A + + N I QLP+L+ + + + Sbjct: 178 IFKHAIRNGLATHNPATDLAEAIKPHKTTNHHRITSQQLPKLLTDINAYQGDVLVKLGLW 237 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + T R E W EID+ W+IPA +MK R H VPL+ A+AILE +K L Sbjct: 238 FLCYTFVRTNEIRFMEWSEIDYKHGLWRIPADKMKAKRLHIVPLAPQAMAILEQIKELGF 297 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +++F + +P + AL G G + HG R +AST L+E+ F + IE Sbjct: 298 SDQYVFFN-TSTRKPYSQSAFINALWNMGYKGKMTGHGFRGLASTTLHEKEFMHEAIELQ 356 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 LAH +N++ AYN + +L R MM WA+ + A +G + Sbjct: 357 LAHDRENKISAAYNGAQHLPYRIDMMHQWANFIDDAYAGKL 397 >UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C3XC22_OXAFO Length = 427 Score = 338 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 144/431 (33%), Positives = 222/431 (51%), Gaps = 24/431 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ KPL+ +IK KPK+ Y+L+DG GL L + SGSKLW+ ++ +P + + ++ S Sbjct: 1 MAKIIKPLSPIQIKNTKPKEKAYKLFDGGGLYLEVLPSGSKLWRLKFQKP-SGKESRLSL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQE-------AKTNTFLLVAER 113 GAYP VSL RK R E++ LLA+ IDP E +KEQ QE F +A R Sbjct: 60 GAYPDVSLEQVRKKREEARRLLAQGIDPSEDRKEQKEAKQEQDVIRAFKDDRMFERIAMR 119 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAV----QPVQARGALE 169 + KK T+DY + + R E +FPAIG +I EI+ L + + ++G Sbjct: 120 LYASKKGRTTDDYRNTMLRQFELHLFPAIGKKNIAEIEGRELFTLFKAVSEKLNSKGKPM 179 Query: 170 T--VRRLCQRINEVMIYA--QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHT 225 T R+LCQ EV A +N+ P ++ K K Q ++M I +LPQ + Sbjct: 180 TYMARKLCQWAAEVYDLANVENSSFALNNPCRSVIKFLPKHQTEHMARIGFTELPQFIQA 239 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEW-KIPAARMKMNRDHTVPL 284 + + T+ L T R A+W + D N W + P K H +PL Sbjct: 240 LEAYGGHILTKSAIWMLLYTGMRQTSIRRAQWSDFDLNKGIWNRKPEKVDKN--IHIIPL 297 Query: 285 SDGALAILEMMKPL-SGGRE-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSI 342 + A+++L+ ++ L +G E +FPS M+ + A++R G + HGLRS+ Sbjct: 298 PEQAISLLKDIQLLATGNSENLVFPSVFAGQLKMSEAAIGQAIERMGF--QMTGHGLRSV 355 Query: 343 ASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA-ADSGSI 401 ST LNE GF P ++E L H + + AYN + +LE+R+ MMQ WA+ + + + + Sbjct: 356 VSTGLNELGFTPRLVEVQLGHKKGDAIEAAYNNAQHLEERKKMMQRWANYLNSFKEPKNE 415 Query: 402 VLTHLSKIRLV 412 LT+L K ++V Sbjct: 416 KLTYLVKKKVV 426 >UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LIX3_RHOVA Length = 392 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 134/392 (34%), Positives = 202/392 (51%), Gaps = 4/392 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +I+ KP + D++L D DGL LL++ +GSKLW+ Y + + G YP ++ Sbjct: 3 LSDLKIRTTKPTERDFKLSDADGLYLLVRPNGSKLWRLNYRHL--GKNKTLAIGKYPDIA 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS AR RAE++ LLA+ +DP ++ +V ++ A NTF VAE + +E Sbjct: 61 LSTARDKRAEARRLLAEGVDPSYRKQVEVAKAKVAAANTFEAVAEEYLASLARDRSEGTV 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 L + ++P +G I E++ H +++A+Q ++ RG ++ R I +V A Sbjct: 121 RANSHILRKKVYPLLGRRPIAELRPHEILEALQSIEDRGQVDMAHRARTLIGKVFQLAAL 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLFMWQLLTI 246 + P+V + + + +N S+ +Q L+ + T S + R ++ T Sbjct: 181 SDRAPTDPTVVLRGRLKSWRVQNRASVTSEQTFAPLLRRIDTYEGSPNVRAAMLFLAHTF 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R E A W EID W+IP RMKM R H VPL+ AIL M G ++IF Sbjct: 241 VRTVELRFATWSEIDLEDGVWRIPEERMKMGRPHDVPLTASTRAILRDMAKFRRG-DYIF 299 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 S + T+ A+K G G + HG RS AS+ LNE G+ DVIE LAHV+K Sbjct: 300 VSAHVGKSVLGDGTLRKAMKSIGYQGRMTPHGFRSSASSILNERGYRSDVIEMQLAHVEK 359 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 N VRRAYNR+ Y +R MMQ W++LV Sbjct: 360 NAVRRAYNRTLYWNERVSMMQDWSNLVDGWRK 391 >UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacteria RepID=B1Y4T5_LEPCP Length = 427 Score = 335 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 139/390 (35%), Positives = 202/390 (51%), Gaps = 23/390 (5%) Query: 8 LTDTEIKAAKPKDAD--YQLYDGDGLTLLIKS------SGSKLWQFRYYRPLTKQRTKQS 59 LTDTE + AK + +L D GL L +K SGSKLW+++Y + + Sbjct: 2 LTDTECRNAKCPEGRAFVRLADAGGLYLEVKPPGAKTPSGSKLWRWKYRH--GGKEKLLA 59 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 GAYPAVS++ AR+ +A+++ LL DP E +KE +F VA +WW K Sbjct: 60 IGAYPAVSVAGARREQAKARALLDAGTDPGEARKEAKYAKLNEHETSFEAVARQWWAGWK 119 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + TE YA+ + R LE D FP IG + + A V+ + ++ARG E RR+ + Sbjct: 120 ANKTERYAEYVLRRLELDAFPVIGAKPVAGLTAPDFVRMAKKIEARGVGELARRIMETSG 179 Query: 180 EVMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 +VM +A GL + P+ ++ G + +N + +LP LM + S+ TR Sbjct: 180 QVMRWAVAHGLTERNPTADVKPGDILKPRTVENFARVGAAELPDLMRHINAYDGSVFTRL 239 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM------NRDHTVPLSDGALAI 291 LT R +E A+W E D +A+EW IP R+ R H VPL+ ALA+ Sbjct: 240 ALQLMALTFVRTSELIGAQWQEFDLDAAEWTIPPDRIGRKGRQGERRAHLVPLAPQALAV 299 Query: 292 LEMMKPLSG-----GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 L +++ G G +FP +PM++ T+ AL+R G G + HG R IASTA Sbjct: 300 LRLLQSARGADRCRGPALLFPGERDHERPMSNNTMLKALERMGYKGKMTGHGFRGIASTA 359 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRS 376 LNE GF DVIEA L+H++ N VR AYN + Sbjct: 360 LNEMGFRFDVIEAQLSHIEGNRVRAAYNHA 389 >UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y106_LEPCP Length = 429 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 140/415 (33%), Positives = 209/415 (50%), Gaps = 22/415 (5%) Query: 11 TEIKAAKPKDAD-YQLYDGDGLTLL-IKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSL 68 E+KA ++ DG GL LL + G+ W+ Y +R S G YP L Sbjct: 14 AELKAIVDGKKPARRIGDGGGLYLLPLVKGGAHGWRLDYT--FNGKRKTLSLGTYPDTGL 71 Query: 69 SDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAK----------------TNTFLLVAE 112 S ARK AE++ L+A+ DP EH+K + + VA Sbjct: 72 SLARKKAAEARTLVAEGTDPSEHRKGVKEERERQHLAGQEAAQRAAAGLAEPGSLEAVAA 131 Query: 113 RWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 W + + TE +I SL+R +FP +G + EI + VQ ++A GA ET Sbjct: 132 DWLQHRAGAWTEGTRHNIAGSLKRYVFPTLGRRPVGEIAPGEIRTCVQRIEASGAAETAG 191 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIG--KAFEKPQKKNMPSIRPDQLPQLMHTMRTAS 230 R+ QR+ + YA L+ A P+ + + F K+ P++ + P + + Sbjct: 192 RVFQRLRALYRYAVAHELVAADPTYPLKPSEIFRPRDTKHRPAMSAQEAPAFLRKLADYG 251 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + R + +LT RP E A W EID A+ W+IPAA MKM +H VPLS ALA Sbjct: 252 GDPTVRNALLLLVLTAVRPGELRAAEWTEIDEAAALWRIPAAHMKMKAEHLVPLSVQALA 311 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 +LE M+ L+G + IFPS P +P + T+N+AL R G G +HG+R++ ST+ NE Sbjct: 312 VLEEMRALTGTQALIFPSPFYPGRPFSENTMNSALARMGYKGEATAHGMRTLFSTSANEA 371 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 G DVIE LAH ++++VR AYNR++Y+ +RR +M WW + V + G+ V+ Sbjct: 372 GHRGDVIERQLAHEERDDVRGAYNRAEYMAERRRLMTWWGERVDSMRRGAEVIPF 426 >UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW0_9NEIS Length = 394 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 124/395 (31%), Positives = 197/395 (49%), Gaps = 7/395 (1%) Query: 7 PLTDTEIKAAKPKDADYQ-LYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD + K P D + L DG GL L I + G + W+ +Y +++ Q G YPA Sbjct: 2 KLTDNQCKHTPPPDKGVKQLSDGGGLYLQIDAKGRRYWRIKYTY--NQKQHTQHLGIYPA 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK--KTSVT 123 + L AR R + K+LL++ I+P+ HQ++Q R Q+ TNTF VA +W K K Sbjct: 60 MPLKAARMERDKIKLLLSQGINPKTHQEQQQRAEQKRITNTFEHVARKWHTTKAEKGDWK 119 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 +A + R +E + P +G +SI +I+ ++ A+Q V+ G + T ++ + + Sbjct: 120 PAHATRVLRQIELYLIPPLGSLSIADIEPLDILHAIQNVEHTGKIATANKVYDIAHAIFS 179 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCLFMWQ 242 +A L + + ++ + + +L L+ + + S + L Sbjct: 180 FAARMKLCPYNAAAELKPELQQAKATPYRHVTDTGELTALLQAIDGYTGSPQVKVLLQLA 239 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 L RP+E +W +IDF A+ + A MK H VPLS ALA+L +KP++G Sbjct: 240 PLVFARPSELRLLKWADIDFQAACYHKAAHEMKNGIAHIVPLSRQALALLSSLKPVTGHY 299 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 E++F + +P++ AL R G + HG R AST L+E+ + D IE LA Sbjct: 300 EYVFHN-KAAGKPLSEAAARKALSRIGWLDKVTLHGFRHTASTLLHEQQYSSDWIERQLA 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 H D N R +YN + +LEQRR MMQ WAD + + Sbjct: 359 HKDPNTTRASYNFAKHLEQRRQMMQEWADFLDSLK 393 >UniRef50_A7H0X5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0X5_CAMC5 Length = 396 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 114/394 (28%), Positives = 191/394 (48%), Gaps = 16/394 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D++IKA KPK+ Y++ DGD L + + SG+K + + + + + + S G YPA+S Sbjct: 4 LNDSKIKALKPKEKRYKISDGDNLYIQVMPSGTKTFIYEFKSRSSGRYKRISLGQYPAIS 63 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR+ R E + LA +P K+ +F V + W+ K+ V+ A Sbjct: 64 LLMAREKRLEFQKALANGDEPMSEAKQ--------AMTSFEAVFDEWFKFKQKEVSTKQA 115 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 R ER P G I I +++AV+ + ET+ R I+++ +A Sbjct: 116 FTHKRYYERFFLPKFGKDDIKTITKRQILEAVESLNKEAKFETLDRALSSISQLFRWAVM 175 Query: 188 TGLIDAVPSVNIGK--AFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLFMWQLL 244 ++ P+ I K F+ P+ + +I D + +L++ ++ + ++ LL Sbjct: 176 NEYLEHSPTYGIDKNALFKMPKVNHYAAIFDDDGIRKLVNNIKNYDGDIRVITAALFGLL 235 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 + RP A+W EI+F W+IP +MKM H VPL A+ +L K EF Sbjct: 236 SAQRPFNVRSAKWSEINFEKKIWEIPKEKMKMKEAHIVPLCSQAIKLLSSFKKYEFRSEF 295 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALN----EEGFPPDVIEA 359 +FPS P++ +V + L+ G +V HG R++ ST + E G +IE Sbjct: 296 LFPSVKSTKIPISDNSVRSMLRNLGYTNDDIVPHGFRAMFSTICHEHIKEHGLEERIIEL 355 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 L H ++N+V+ AYN + L++R +MQWW D + Sbjct: 356 CLDHAERNKVKAAYNHAKNLKERAQLMQWWGDYL 389 >UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5EXV7_DICNV Length = 401 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 148/396 (37%), Positives = 208/396 (52%), Gaps = 15/396 (3%) Query: 5 TKPLTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 LTD I+ AK Y +L DGDGL+L I GS W FRYY + + S G Y Sbjct: 9 IMRLTDKIIQTAKKPSRGYLRLTDGDGLSLKITDRGSYFWNFRYY--INGRERNMSLGRY 66 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNS---QEAKTNTFLLVAERWWNVKKT 120 PA+S+ AR E + L + +DP +K++ ++ + TF VA W+ +K+ Sbjct: 67 PAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRP 126 Query: 121 SVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 E +A + +LE+ +FP IG I+ I L+K ++ + R ET R+ QRI Sbjct: 127 EWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIR 184 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 V YA T + P++ + K F K PS+ +L + T + T Sbjct: 185 AVFDYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALAL 242 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT+TR E +W E +EW IPA RMKMNR H VPLSD AL IL+ ++ L Sbjct: 243 RLLILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIE 358 F + N P++ T++ A+KR G G V HG R+ ASTA+NE G + PD IE Sbjct: 301 RNNSPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE 359 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 LAH D+N VR AYNR++YLE+R MMQWWAD ++ Sbjct: 360 RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIR 395 >UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UDD1_9RHOB Length = 406 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 119/402 (29%), Positives = 194/402 (48%), Gaps = 4/402 (0%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +I+A KP D Y++ D +GL++ + G + W+FRY + G YP+V Sbjct: 2 PLTDAKIRALKPADTLYRVSDSNGLSIEVTPKGDRYWRFRYR--FNGKAQMMGLGRYPSV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL AR R + LL + ++P ++ + + + + ++F +A + ++T Sbjct: 60 SLKKARSKRDHYRELLDEGLNPSLERQTRQQELAQLEQSSFGSIATEFLRKRETEGAAPA 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 R+L R + P + + I EI A L++ ++ ++RG + YA Sbjct: 120 TLKKLRALLRLLLPDLAPLPIQEITAPQLLQVLRATESRGKHVVATEARALAGRIFRYAI 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG + PS + +A P+ K +IR P+ L+ + T + + T Sbjct: 180 ATGRCEQDPSYMLREALVTPRVKGYAAIREPEAFGALLARIETYEGDTLIKNGLLLLAHT 239 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP + A+W++ D A+ W+ PA R KM+R H PLS + +++ M + Sbjct: 240 FVRPGQLRLAQWEDFDLEAALWRAPADRTKMSRFHITPLSSQVVCLIKEMHRNKADDTLV 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAG-LGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 SR+KP P++ T N AL+ G +G V V+HG R AST LNE+ + D IE L HV Sbjct: 300 MGSRVKPGHPISDMTFNKALRSLGVMGDVHVAHGFRKSASTMLNEQEYNYDWIERQLDHV 359 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHL 406 +N +R YN + YL+ R MMQ W+D + HL Sbjct: 360 SQNRIRGIYNAAQYLQGRTRMMQEWSDYLDRLKDDGTRANHL 401 >UniRef50_A7JZW2 Site-specific recombinase, phage integrase family protein n=2 Tax=Vibrio sp. Ex25 RepID=A7JZW2_VIBSE Length = 471 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 142/428 (33%), Positives = 220/428 (51%), Gaps = 37/428 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA LT+T+IK A D +Y L DG L L I+ +GSK W F Y TK+R K Sbjct: 24 MA--INKLTNTQIKNAAKSDKEYSLSDGGNLYLRIRKNGSKNWLFIYTDFSTKKRKKMGL 81 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW----- 115 G+YP ++L + RK+ E + + K IDP+ +++Q + TF +AE+ Sbjct: 82 GSYPNMTLDEVRKVAKELRKQMTKGIDPKLFREKQKLDRLVESQLTFKAIAEKMLLKEEI 141 Query: 116 ---------------------------NVKKTSVTEDYADDIWRSLERDIFPAIGDISIT 148 + + + + L+R+++P +G++ +T Sbjct: 142 QETTNREKLIVEERERARIKGTVFGQDEIDRITNKVRSSHRKRLFLKRNLYPKLGNLPLT 201 Query: 149 EIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQK 208 I A ++ ++P+QA+G LE V+R C N+VM +A N+ +I + +I F K + Sbjct: 202 YITAAGVISVIEPMQAKGQLENVKRACCIANQVMKFAVNSNIIKSNCLADIKDNFAKSKV 261 Query: 209 KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWK 268 +M + P++L ++M M + TRC F Q+ T+ R E A RW +I+ W Sbjct: 262 THMLKVPPNELGEVMAIMSNNQMKPVTRCAFEMQMHTMARADELAAMRWCDINVKNKLWT 321 Query: 269 IPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQ--PMNSQTVNAALK 326 IPA K R+H VPL+D L ILE ++P+SG +FPS + ++ VN++L Sbjct: 322 IPAFYTKGKREHLVPLNDYTLGILEFIRPISGEHIHVFPSDKPNTKFPHISPYAVNSSLN 381 Query: 327 RAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPM 385 L G LVSHG R IAST LNE F D IE LAH+DKN R +YN + YL++R + Sbjct: 382 LTSLKGRLVSHGFRGIASTYLNEHKQFREDAIEMCLAHLDKNTTRASYNSALYLDERYEI 441 Query: 386 MQWWADLV 393 +Q+W+D + Sbjct: 442 LQFWSDYI 449 >UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=cellular organisms RepID=Q3JXH9_BURP1 Length = 414 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 132/405 (32%), Positives = 209/405 (51%), Gaps = 6/405 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + + PL DT IKA KPK A Y + DG GL L + +SGSK W++RY KQ+ + Sbjct: 6 MPKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLH-GKQQPVVTI 64 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAVSL+ AR+ ++A + P ++ + T AE W + Sbjct: 65 GEYPAVSLTAARERARRYAEIVAGGVSPVADARKDRGAVKSLDTIH--EFAEYWIEQQMM 122 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + +Y R+LE+DI+PAIG S++++ ++ ++ RGA + + Sbjct: 123 GKSAEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKR 182 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + YA L+ + P+ I F Q + P+++ +++ + +SI + Sbjct: 183 IYEYAIARQLVTSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIH 242 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +LT+ R +E EARWDE D +AS W+IPA RMK +R+H V L+ A+A+L + Sbjct: 243 LLVLTMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRT 302 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEA 359 +++FPS ++P+ T+N A++ + V H R AST L+E G P D IE Sbjct: 303 SHQYVFPSSRGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEK 362 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA-ADSGSIVL 403 ALAH K ++ YNR++Y ++RR + WAD V A D G V+ Sbjct: 363 ALAHSIK-GIKGVYNRAEYADERRRITALWADFVDAQIDEGRKVV 406 >UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=Q48NQ4_PSE14 Length = 391 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 122/392 (31%), Positives = 197/392 (50%), Gaps = 5/392 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ AKP +L D GL L + + GSKLW++R+ L + + GAYP VS Sbjct: 3 LTDLKIRQAKPGKTSSKLTDSGGLYLEVTTGGSKLWRYRFR--LAGKENTYAIGAYPEVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR R ++ L+ +P ++ + NTF +V++ W + T+ Y Sbjct: 61 LSDARTERDAARDLVKSGRNPAHVRQTEKAQQLTENRNTFKIVSQEWIEKRLAQRTQKYR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D I R+ D++P IG + + EI A +++ + + R A + Q I+ V Y Sbjct: 121 DQIERAFVNDVYPRIGRLPLREITAAQVLEIITAMDRRNATTLALMVRQWISAVFCYGVA 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 T D+ P+ + A + + + + +L + ++T T + Sbjct: 181 TLRADSDPASAVRGAIRRNEVNHSRPMSLIELREYFRAVKTYGGHRRTVIALYLLPILFV 240 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E A W E D +A+ W IPA RMK + H VPL + ALA+L ++ ++ G +FP Sbjct: 241 RTIELRLAEWSEFDLDAALWTIPARRMKKRKIHLVPLPESALALLRELREITAGN-LLFP 299 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVDK 366 P +P+++ T+N AL+ L G H R+ AST L E + DVIE LAHV++ Sbjct: 300 GMRHPKEPISATTLNRALEYMDLKGWHC-HDFRATASTHLYESELWSSDVIEFQLAHVEQ 358 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + + AYN + YL R+ +MQWW + + ++S Sbjct: 359 KKSKAAYNHASYLPARKALMQWWDNYIFGSES 390 >UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales RepID=A9I0E1_BORPD Length = 536 Score = 332 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 129/417 (30%), Positives = 205/417 (49%), Gaps = 23/417 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L++T+IKAAKP +Y L DGD L L ++ +G K W +RY + + K G YP V+ Sbjct: 103 LSETQIKAAKPGQKEYMLNDGDNLYLRVRITG-KAWIYRYMKDS--KPIKLGMGPYPEVT 159 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT--SVTED 125 L+ AR E+ A +DP+E +++ ++ A+ +TF L+A W K +E Sbjct: 160 LAQARTKAYEANSQRANGLDPKEVREQLAEQTRIARLHTFELLARAWHASAKKDREWSEG 219 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA + R LE IFP +G I I +V+ + + RG LET +R+ + + V YA Sbjct: 220 YAQKVIRHLEIHIFPWVGHKPIEMILPTEIVRCLHRPKDRGNLETAQRVREAVQHVYQYA 279 Query: 186 QNTGLIDA--VPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQ 242 + G ++ P+ ++ +I P QL QL+ +R+ TRC Sbjct: 280 VDVGALEPSKNFVNKNTGGLPPPRSRHFAAITEPAQLGQLLRDIRSYHGQFITRCALRLA 339 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR---------DHTVPLSDGALAILE 293 + RP + A W++I W+ P +MKM H VPL AL IL Sbjct: 340 PMMFQRPGQIRLADWEDISLEVELWRCPPEKMKMREWQKRDSRTPAHIVPLPRQALEILR 399 Query: 294 MMKPLSGGREFIFPSRIK---PNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALN 348 + PL+G +F S + ++ ++ T+NAAL+ G + HG R+ A T + Sbjct: 400 ELHPLTGPTGPVFRSMSRRSEKSRYISDNTINAALRTMGYDTKEEITGHGFRATARTMIR 459 Query: 349 EE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 E G+ PDVIE LAH E+ +Y+R+ ++ QR+ M+Q WAD + + G + + Sbjct: 460 EHLGWEPDVIERHLAHTSDEELGSSYDRAAFIAQRKAMVQQWADFLDELEVGQMPMP 516 >UniRef50_Q0C1T8 Site-specific recombinase, phage integrase family n=2 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1T8_HYPNA Length = 409 Score = 332 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 123/389 (31%), Positives = 200/389 (51%), Gaps = 5/389 (1%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T PLTD +I++ KP + DG L + ++ +GSKLW+F Y ++ + G YP Sbjct: 14 TMPLTDLKIRSLKPDGKPRRYTDGGNLFIEVRPNGSKLWRFAYK--FDGKQKLMALGTYP 71 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +SL+ AR+ RAE++ LL + IDP + K Q +TF +A + + Sbjct: 72 EISLARAREKRAEARALLIEGIDPMQQAKVNKLERQALTEHTFSAIAAELLDKNRREGLA 131 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 L +GD+ +T+IK ++ ++ V++ G ET RRL I++V Y Sbjct: 132 GATLSKKSWLVGIANADLGDLPVTQIKPTHVLVPLRKVESEGNYETARRLRAVISQVFRY 191 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLFMWQL 243 A T + P+ + A P+ + P+I + L+ ++ ++ T+ Sbjct: 192 AVATARAEHDPTAGLRGALIAPKVTHRPAIVDREKFAGLIRSIWAYDGAIETKAGLQLMA 251 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 L RP E + W E D W IPAAR KM R+H PLS A+ IL+ + ++G Sbjct: 252 LLYPRPGELRLSTWGEFDLRKRTWTIPAARTKMRREHKKPLSGAAVEILKRLHAVTGHEP 311 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 ++ S++ +P++ T+N +L+R G + SHG R+ AS+ LNE G + PD IEA L Sbjct: 312 YVLVSQLSRGKPISENTLNGSLRRLGYAKEEMTSHGFRASASSLLNESGKWHPDAIEAEL 371 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 AH+ +++R+AY+R+ Y +QR M WWA Sbjct: 372 AHMGADQIRKAYHRATYWDQRVEMADWWA 400 >UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8S0_ACIBT Length = 433 Score = 332 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 129/423 (30%), Positives = 213/423 (50%), Gaps = 21/423 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA++ +PLTDT+ + KPKD +Y DG GL L ++ +G+K W FRY +R K + Sbjct: 1 MAKQVRPLTDTKCASLKPKDKEYVEADGGGLYLRVRPTGAKSWIFRYTNRGNDKREKITL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-- 118 G YPA+SL+ AR+ + E ++A+ +DP+E + +++ NT V W + Sbjct: 61 GPYPALSLAKAREKKHEFLRMIAEGVDPKEQ--LSILLAKKNNVNTLENVVRVWLDAYAV 118 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + ++ED + R E +FP D +I +I L A+ + + + +R+ + Sbjct: 119 RKPLSEDTKNKQLRKFENHLFPKFKDKAIEQITLRDLKDALNVIYDH-SPDNAQRIRASL 177 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRC 237 +V YA I + ++ +K + + R +PQL+ ++ S + T+ Sbjct: 178 IQVYSYAVQHSYIQTNIARDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNPLTKL 237 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLS 285 + L T R +E ARW+EIDF A W+IP R KM +H VPLS Sbjct: 238 CLLLGLHTFLRSSEIRFARWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHLVPLS 297 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIAS 344 ++ ILE + SG +F+FPS ++ T N AL+R G + HG R++A Sbjct: 298 KQSIEILEKVYQYSGDCDFVFPSLNNKRIFISENTPNDALRRMGYTKEEISFHGFRALAR 357 Query: 345 TALNEEG-FPPDVIEAALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADSGSIV 402 +AL E F D +E ++H ++NE AY ++YLE+R +MQ W+D + A ++G + Sbjct: 358 SALGEMSIFSRDALEKQMSHQERNETVGAYTHIAEYLEEREKIMQIWSDWLSAIENGDYI 417 Query: 403 LTH 405 H Sbjct: 418 SPH 420 >UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombinase phage integrase family protein n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF6377 Length = 393 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 116/393 (29%), Positives = 188/393 (47%), Gaps = 5/393 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLT +I+ AKP A +L D GL L + G+KLW++R+ L + + G+YP + Sbjct: 2 PLTAVKIRHAKPGPAPIKLTDSGGLFLEVTPGGNKLWRYRFR--LAGKENTYAIGSYPDL 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SLSDAR R ++ L+ +P ++ +NTF +VAE W + + T Y Sbjct: 60 SLSDARAERDAARELVKLGRNPAHVRQTVKAQQLSENSNTFKVVAEEWIEKRLANRTLKY 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D I R+ D++P IG + EI A ++ + + R A + Q I+ V Y Sbjct: 120 RDQIRRAFVNDVYPKIGRFPLREITAAQILVIITQMDKRDATTLALMVRQWISSVFCYGV 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T D+ P+ + A + + + ++L + + T L Sbjct: 180 VTLRADSDPAAAVRGAISRKDVNHSRPMNLEELAEYFLAVGKYGGHRGTVIALYLLPLLF 239 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R E A W E D + + W IP+ RMK R H VPL + A+A+L ++ L+ G +F Sbjct: 240 VRTVELRLAEWSEFDLDKAIWIIPSGRMKRKRPHMVPLPERAIALLRELRSLTAGN-LLF 298 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVD 365 P P+QP+++ T+N AL+ L G H R+ AST L E + + IE L+H + Sbjct: 299 PGMKHPSQPISATTLNRALEYMDLRGWHC-HDFRATASTHLYESQLWRSEAIEMQLSHKE 357 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 ++ + AYN + Y ++R MM WW ++ + Sbjct: 358 SDKTKAAYNHAKYWDERSKMMVWWGHRLEPLIA 390 >UniRef50_A4VPC8 Site-specific recombinase, phage integrase family n=6 Tax=Proteobacteria RepID=A4VPC8_PSEU5 Length = 455 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 117/397 (29%), Positives = 203/397 (51%), Gaps = 11/397 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +IK+ KP D D++L DG GL LL+K +G KLW+++Y L + + G++P VS Sbjct: 58 LTDAKIKSVKPTDRDWKLSDGGGLFLLVKPTGCKLWRWKYR--LQGKENLFAIGSFPQVS 115 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA-------KTNTFLLVAERWWNVKKT 120 L++AR R +++ L+ + I P +++ + + EA + ++F VA+ + K Sbjct: 116 LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRARESSFAKVAQAYLTEIKP 175 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + + P + +++I + ++ + GA + + ++ Sbjct: 176 VFAYSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKTHGAWAAIH-VKGDLSA 234 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A GL++A P ++ P ++ ++ +Q+ + +R T Sbjct: 235 IFEFAVVRGLVEANPIPSLRGLLRAPASESKAAMTREQIQKFYQALRGYRGYPETALCLR 294 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 LT RP EAA+A W+E DF + W+ PAA+MK RDH PLS A+A+L+ ++ ++G Sbjct: 295 LIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARRDHISPLSTQAIAVLKGLQRITG 354 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 G ++FP R + A++ LG H R+ ST NE GF PD IE Sbjct: 355 GGRYLFPHRSGKGFT-TPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQ 413 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 LAHV+ N+VR YN++ L+QRR ++Q WA + A+ Sbjct: 414 LAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSTAE 450 >UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_PSEA7 Length = 395 Score = 330 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 132/391 (33%), Positives = 200/391 (51%), Gaps = 4/391 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +AAKPK+ Y+L D GL L +K +G K W RY L + + + G YP+VS Sbjct: 2 LTDAHCRAAKPKEQLYRLNDFRGLYLEVKPNGVKAW--RYRFKLAGKGSWFALGDYPSVS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR E++ L+ + I+P ++++ + ++ NTF VA+ W +K E Sbjct: 60 LADARDKCEEARKLVKQGINPVQNRQVERIKREQDSANTFEAVAKEWLALK--DWEEVTK 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 L+R +FP+IG + + +I ++ + RGA + ++ + A Sbjct: 118 RRRLDMLQRVVFPSIGKMPVRQITPAHVLDILSKTAKRGAPTVAAEAKRTMSGIFELAVA 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 T D P + KA + ++ ++ Q+ +L+ T+ Sbjct: 178 TLRADNDPVWPVRKALPANKTQHKTALTTAQIGKLLTDFDNHRCGYQVNFCIQLMWWTLA 237 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 RP EAAEA W E D + + W IPA RMK R+H VPL A+ +L + +SG R +FP Sbjct: 238 RPGEAAEAEWAEFDLDKALWSIPARRMKARREHLVPLPRQAVEMLRRLHAISGDRMHLFP 297 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 R N+PM++ ++ ALK G G HG R+ ST LNE G+ PD IEA LAH + N Sbjct: 298 GRDDRNKPMSAHSIRQALKALGWSGTYSPHGTRTTGSTRLNEMGYRPDAIEAQLAHAEPN 357 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 VRR YN + YL++RR MMQ WAD ++ Sbjct: 358 SVRRTYNHATYLDERREMMQAWADKLELWKR 388 >UniRef50_B9NUX0 Site-specific recombinase, phage integrase family n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NUX0_9RHOB Length = 404 Score = 330 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 126/397 (31%), Positives = 196/397 (49%), Gaps = 5/397 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTD +K +P Y+ D GL +L+K +GSK W Y ++ S+G YP + Sbjct: 2 PLTDIALKNMQPSGRAYKRSDAHGLYILVKPNGSKHWHLHYR--FLGKQKVMSYGPYPLI 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL +AR+ R + L + IDP +KE+ S+ A+ F ++A + + Sbjct: 60 SLKEAREKRDRDRKFLIEGIDPMVVKKERKLASERAQRGRFDILAAELLEKNRVEGRAEQ 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 L + +++ EI ++ ++ + G LET RL I EV YA Sbjct: 120 TLKKKAWLVEMANKDLAKLAVMEITPSDVLAVLKKQEKAGNLETASRLRTTIGEVFRYAI 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 GL + P++ + A + + ++ +I P++L +L+ ++ S L Sbjct: 180 ACGLTENDPTIPLKGALVQKRPRSRSAITNPERLGELLCSIENYSGYRVVALGLRLLALL 239 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E A+W+E D A +W IPA RMKM + H PL A+ IL ++ +S + Sbjct: 240 HVRPGELRFAKWEEFDLEAGKWTIPAERMKMRQPHVAPLPTQAIDILRELQRISHPDGMV 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 PS+ + P++ T N AL+ G + +HG R+ ST NE G + PD IE ALAH Sbjct: 300 LPSQRRRIDPLSENTFNKALRMMGYSKEEMTAHGFRATFSTLANESGEWNPDAIERALAH 359 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 VD NEVRRAYNR+ + E+R M QWWAD ++ + Sbjct: 360 VDSNEVRRAYNRAAFWEERVEMAQWWADGLEKLQRAA 396 >UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q072_9GAMM Length = 402 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 127/401 (31%), Positives = 213/401 (53%), Gaps = 9/401 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R+TKPLT TEI+ AKP+D Y+LYDG+GL L + SSG+K W +Y +P TK++ + Sbjct: 1 MPRQTKPLTTTEIEKAKPQDKPYRLYDGEGLLLNVASSGTKTWYLQYSKPFTKKKDMVNL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+L+DARK + + LL+KDIDP+ H +E+ R + F V E W KK Sbjct: 61 GRYPTVNLADARKQKNYCQELLSKDIDPKTHFEEEARRKEYEHRTDFKSVFEEWLPTKK- 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + + +++ IG+ + ++ ++ ++PV++ G L + ++ +++ Sbjct: 120 -YAPKTVEKMENYI-KEMLAVIGNKPVNQVTTEDCMRVLKPVESAGHLTKLEKMRSMMSQ 177 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLF 239 + YA TG P +++ F P+ + P+I + L +L+ ++ + +TR Sbjct: 178 TIAYAIATGRAKENPCIHLRGVFMTPETTHAPAILDEAGLTRLVQSIYSYHGHFATRKAL 237 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK--MNRDHTVPLSDGALAILEMMKP 297 ++ ++ RP E +W +IDF + W+ + + PL A+ IL+ MK Sbjct: 238 LFAIIMFARPGEIRHLKWQDIDFEYNNWQYTPNKTRKSTGVSMMSPLPTQAVEILKEMKA 297 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEE-GFPPD 355 E +FPS ++P++ T+N AL+R G S G R+IA T L E+ + Sbjct: 298 Y-KNAELVFPSSNSTSRPLSENTLNQALRRMGFENTEQTSQGFRAIARTVLEEKFKYDYR 356 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 IE L H ++ RAYNR +L++RR MMQ WAD + + Sbjct: 357 WIELQLGHQVRDSNGRAYNRVQWLDERREMMQKWADYLFSL 397 >UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TYD6_MARAV Length = 412 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 120/403 (29%), Positives = 196/403 (48%), Gaps = 10/403 (2%) Query: 1 MARKTKPLTDTEIKAAK--PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M R LT+T +K A +L DG GL L I+ +G + W+ +Y + Sbjct: 1 MTRAANKLTETAVKHATFSKYGKRTKLADGAGLYLDIQKAG-RYWRLKYRY--GGKEKLL 57 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV- 117 + G YP VSL +AR R E+K LLA +IDP H++ + EA TF +A W Sbjct: 58 ALGVYPDVSLKEARAKRDEAKRLLADNIDPVTHRQREKAERVEATATTFKGIALEWLEHV 117 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K +V R LE +P +G + EI+ ++ ++ ++ +G ++ RL Sbjct: 118 HKKNVGATTYPKNKRRLEMYAYPKLGRRPMAEIEPPDVLAILREIEGKGHVDNAHRLKTL 177 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTR 236 I +V YA +TG + ++ P K+ ++ PD++ ++ + T S + Sbjct: 178 IGQVFRYAVSTGRATRDVTADLRGILPAPNVKHHAAVTTPDEIADMLKKIDTYWGSPTVC 237 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 RP RW+EID++A+ W K VPL+ A+ +L+ ++ Sbjct: 238 LALKLSPYLFLRPGNLRHMRWEEIDWDAATWT--TDTTKNGEPLVVPLARQAIDLLKELQ 295 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 L+G RE++FPS +PM+ + AL R L G++ +HG R++A T L E GF + Sbjct: 296 ELNGNREWVFPSGAGKGRPMSENAITGALNRLELQGIMSAHGFRAMAKTVLTERLGFRTE 355 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +IE +AH ++ RAYNR+ +L +R+ MMQ WAD + Sbjct: 356 IIEMQMAHRVRDVHGRAYNRTTWLPERQAMMQQWADYLDNLKK 398 >UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZI9_ACILW Length = 401 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 126/407 (30%), Positives = 198/407 (48%), Gaps = 29/407 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ +++ AK K+ Y L D DGL+L ++ +G K W +RY T +R + G YP +S Sbjct: 3 LTEIKVRQAKSKEKIYFLADDDGLSLKVEPNGRKSWSYRYSLAGTNKRPRMKLGEYPVMS 62 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR +R E K + H+K TF + E W K + ED Sbjct: 63 LKEARSVRDEYK--FNNYENKPLHKK---------YIKTFQDICEEWLEFKIKNSFEDEP 111 Query: 128 D-----DIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + L++D++P IG + EIK + LVK ++ +++R E V++ +N++ Sbjct: 112 RCGVIQLAKKCLDQDVYPNIGLMPFIEIKRYDLVKIIKKIESRNVKEPVKKAYSYLNQIY 171 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQ-KKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 YA G + + + K + KKN P + D+L + + + + ++ Sbjct: 172 DYAVAMGYCEYNIAHGLHKILVNNKIKKNYPHLNSDELSNFLAKLNQINTDPIIKKALLF 231 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----------DHTVPLSDGALAI 291 +L T R E D + WKIPA +K R D VPLSD AL + Sbjct: 232 KLYTGVRGGELLLCEPHHFDLDKKIWKIPALHIKQYRRKVILGHDIPDFFVPLSDQALEV 291 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEE 350 ++ S G +++F S N+P++ T+N +++ G L SHGLRS ST LNE Sbjct: 292 VKSALVWSHGEKYVFSSPRNNNKPIHFNTLNLIIRKMGYTKNELTSHGLRSTFSTILNES 351 Query: 351 G-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 G F + IEA L+H DKN+ R +YN ++Y QR MMQWW D + + Sbjct: 352 GLFQSNWIEAQLSHTDKNKTRASYNHAEYFNQRMEMMQWWGDFIDSC 398 >UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SUB2_ACILW Length = 396 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 130/393 (33%), Positives = 214/393 (54%), Gaps = 17/393 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDTE + A+PKD Y+L D GL+L+I + G K W R + +R +S G YP + Sbjct: 18 PLTDTECRKAQPKDKQYRLSDLHGLSLIITTKGQKYWNVRVT--VHGERKSESLGPYPDL 75 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL AR+L E K + E F VAE W+N +K + + + Sbjct: 76 SLKKARELAYELK------------HRYSRSVLHEDLKPYFEEVAEDWFNNQKETWSSKH 123 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 ++ SL+ +++ A+ + I +I+A +++ ++ ++ARG+LE +R R VM YA Sbjct: 124 ISNVRASLD-ELYIALANKRINQIQAPEILQIIKKIEARGSLEIAKRTLSRCGMVMKYAI 182 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G P+ ++ A + + KN+ S+ ++P+ + ++ T + +LT Sbjct: 183 AHGYRYDNPAGDLVYALKNKRVKNLASLSASEMPEFLRRIKAYPADAQTHHAIVLIMLTG 242 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R +E +ARW+E D +W IP RMK H VPL+D +A L+ ++ L+ +E +F Sbjct: 243 VRVSELLQARWEEFDLEGRKWDIPEERMKNRLSHRVPLTDMMIAELQALR-LTHNQELLF 301 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVD 365 P R+ +PM S+++ A +KR+G G + +HG RS+ ST +NE F PD IE LAHV Sbjct: 302 PHRLNNKEPMRSESILAVIKRSGYAGRMTTHGFRSLFSTVVNESNLFNPDAIERQLAHVP 361 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +N +R AYNR+ Y ++R +MQW+ + V+ + Sbjct: 362 QNRIRSAYNRAQYWDERVRLMQWYGEQVEGWMA 394 >UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0FEDC Length = 418 Score = 327 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 126/416 (30%), Positives = 209/416 (50%), Gaps = 19/416 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IK AKPK Y++ D GL LLIK SG K W++ + + R + G YP +S Sbjct: 3 LTDTAIKNAKPKTKAYKMSDSGGLFLLIKPSGYKSWKYDFR--INSTRGSYTIGKYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR+ +++ L+A+ I+P+ K Q + + E +T F +W N K + E Sbjct: 61 LKQARQEHLQARELVAQGINPK-QIKTQRKVNDELQTKRFSYYMNQWLN--KQVLAESTF 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+ + +++++ P + +I E L+K + + RGA ET RL V Sbjct: 118 KDLKQRIDKNLIPFLDKKNINEYTTADLLKIMLSISDRGAKETAIRLANVARRVFNEVLI 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKK---NMPSIR-PDQLPQLMHTMRT--ASISMSTRCLFMW 241 G+I+ P+ + + KP K+ N I ++L L++ + A + Sbjct: 178 LGIIETNPAQGLAELLPKPDKRIDNNFGHITSTEELKILLNQIDAPSARQDFAVTQALKL 237 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP +W+ I+F+ + K+PA +K N+ VPL+ A+ IL+ M+ ++G Sbjct: 238 MPLVFLRPYNIRFLKWEYINFDENIIKLPATELKNNKPLDVPLATQAVTILKQMQQVTGH 297 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRA-------GLG-GVLVSHGLRSIASTALNEEGFP 353 + ++F + + P++ T ALKR G G + SHG R AST LNE G+ Sbjct: 298 KTYVFVTAQGKDTPLSENTTTNALKRIINPTTNKPYGTGYMTSHGFRHTASTMLNELGYE 357 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 D+IE LAH +K+ +R YN++ ++ +R MMQ WAD + +G+ ++ +I Sbjct: 358 ADIIELQLAHTNKDRIRATYNKAKWMNKRIAMMQDWADYLDGIKAGTNIVPIKKEI 413 >UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Sinorhizobium phage PBC5 RepID=Q8W6M6_9CAUD Length = 433 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 134/403 (33%), Positives = 204/403 (50%), Gaps = 15/403 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +IK AK D DY+L DG GL L + S+G+K W+ RY + G YP VS Sbjct: 4 LTDKQIKNAKKADKDYKLADGGGLNLFVLSTGTKSWRLRYR--FDGKEKTLVIGNYPDVS 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR R +K L DP +K + ++ +TF ++A W ++K + E +A Sbjct: 62 LADARGEREAAKETLKSGRDPNVVKKIEKAIGKQQAADTFEVLAREWHKLQKPTWVEKHA 121 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+ SL D+FP IG + I +I A T++ ++ V+ R A ET RR+ QRI+ + +Y Sbjct: 122 SDVLDSLVNDVFPIIGQMPIRDIDAPTVLGVLRLVEQRDAKETARRIRQRISAIFVYGIA 181 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G P+ + A +K P+I D+ +++ T+ LT Sbjct: 182 SGRASEDPAAVVRGAMAPMKKGRQPAITNLDKAREMLVATWKTPSHPVTKLGLRLLTLTA 241 Query: 247 TRPAEAAEARW---DEIDFNASEWKIPAARMK--------MNRDHTVPLSDGALAILEMM 295 RP W DE+D + W IPAARMK RDH +PLS A+ + ++ Sbjct: 242 VRPGTLISTPWTELDEVDESDPVWVIPAARMKLLLQHKDDETRDHLIPLSKEAMETITVL 301 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPP 354 + L+G F+ P+ ++PM+ + L R+G V HG RS ST +NE Sbjct: 302 RSLTGRGPFVLPNGRHAHKPMSENALGYLLNRSGYHHKHVPHGFRSTFSTVMNERYPADR 361 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 VI+ LAH K++V AYNR+++LE+R+ + Q W L+ D Sbjct: 362 QVIDLMLAHTPKDKVEGAYNRAEHLERRKELAQIWDGLIITKD 404 >UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepID=Q1Q875_PSYCK Length = 452 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 116/409 (28%), Positives = 197/409 (48%), Gaps = 16/409 (3%) Query: 8 LTDTEIKAAKPKDA-----DYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 L+D +I+ KP D + D GL LL++SSG++ W Y ++ K + G Sbjct: 2 LSDAKIRKLKPTDKCTPSRPDKYSDQQGLQLLVRSSGTRTWVSAYR--FDGKQQKTTLGT 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YP + L++AR A+ K L+A I+P+ +++ +++AKT F A W ++ +V Sbjct: 60 YPQMGLAEARVANADIKALVANGINPKNKKRQDKLANEQAKT--FNDYAVEWLEERERNV 117 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV------RRLCQ 176 + + +D+ P+ I++ ++ +++R E RR Sbjct: 118 KPRTYQQDYNRMHKDVIPSFEGIALKDVTFEDCKLMADNIESRTNNEGASPREVTRRTID 177 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 + ++ A LI+ + + + + K + K+M + +LP+L+ + TR Sbjct: 178 LVGNILRRAMRERLIEVNHTDGLKELYPKAKTKHMKHVELSELPKLLQDIEGYHGHDQTR 237 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + + R E +W+ IDF W++ +K+ R H VPLSD LA+LE MK Sbjct: 238 LGMKFLAYSFCRTIELRMMKWEHIDFPNRLWRVDIDNLKIARKHVVPLSDQMLAVLEEMK 297 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 ++G E++F +QP + + +N AL G GG HG R IAST LNE G+ D Sbjct: 298 HITGQYEYVF-YHTGMHQPYSEEFINNALDILGYGGKQTGHGFRHIASTNLNELGYMGDA 356 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 IE +AH K+ +R YN + +LE+RR +MQ WAD + V+ Sbjct: 357 IEKQMAHDKKSSIRAVYNHAQHLEERRKIMQVWADFLDLLRDKGEVIDF 405 >UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0I233_HAES1 Length = 434 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 141/411 (34%), Positives = 214/411 (52%), Gaps = 19/411 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR KPL++TEI+ AK K Y L DG+GL L ++ SGSK+W+F YY+P TK+RT+ S Sbjct: 20 MARLIKPLSNTEIEKAKIKKKAYPLRDGNGLFLSVEISGSKIWRFNYYKPYTKKRTEISI 79 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL ARK+R E LLA++IDP+ H+ + +N+Q + NTF V +W+ Sbjct: 80 GKYPEISLLQARKIRDEYLALLAQNIDPKTHRDQ-KQNTQALERNTFKYVCAKWYAEIYP 138 Query: 121 SV--TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + ED W+ LER IFP + +I ++EI L+ + + GA T+ +L + + Sbjct: 139 TKAPNEDTRARNWQRLERHIFPKLAEIPLSEITPRLLIDVYREI---GASNTLDKLHRLV 195 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA----SISMS 234 + Y G+I+ F P KN P+I P +LP+L+ + TA + + Sbjct: 196 KATLDYGIKLGIIEGHNCNLAKDDFIAPLAKNHPAITPAELPELLKAINTAFKEGKLEFN 255 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-------DHTVPLSDG 287 T F LLT R E W ID IP+ MK R DH +PLS Sbjct: 256 TLFAFNLTLLTGLRQKELTRIEWAFIDDGNKLLIIPSENMKQTRKLREQPKDHIIPLSSQ 315 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTAL 347 + ++ ++ +G ++FP N+ + TV+ AL+ G +HGLR + + L Sbjct: 316 MIKLIGTIRQFNGSSPYLFPRVRNRNKTIGLDTVSNALRDNGYRDKQDAHGLRVVFRSYL 375 Query: 348 NEEGFPPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 ++ GF V E A+AH K +++ Y+R DYLE+R+ Q W D + Sbjct: 376 SQIGFSVVVGELAIAHNSTGKGKIQAIYDRYDYLEERKQAYQAWGDYCEKC 426 >UniRef50_B8F737 Phage integrase family site specific recombinase n=4 Tax=Pasteurellaceae RepID=B8F737_HAEPS Length = 416 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 145/408 (35%), Positives = 225/408 (55%), Gaps = 17/408 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L T+I+ AKPKD DY L DG GL L+++ SG+K++ F YY+P TK RT + G YP + Sbjct: 4 KLVGTQIRQAKPKDKDYPLSDGGGLRLIVRKSGAKVFVFNYYKPYTKTRTNFTIGEYPEI 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK--KTSVTE 124 SL ARK A+++ LLA++IDP ++ + TF +A +W+ + K +E Sbjct: 64 SLIQARKEHAKARALLAQNIDPVRQRELDKQEQANRLELTFEKMAVKWFEDRKLKADFSE 123 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 A D W +R I P G+ I+EI + A++P++ G LET+R+ +INEVM Y Sbjct: 124 RTAKDTWALFKRHILPHFGNYPISEITPLIAINALKPLERAGKLETIRKTIAKINEVMRY 183 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM----RTASISMSTRCLFM 240 A + GLI +IGK F+KP ++M +I+PD+L + + ++ M Sbjct: 184 ALHRGLIATNNLSDIGKEFDKPTPQSMNTIQPDELAEFLQAFYQKRDKGRFGLNVFYAVM 243 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAAR-MKM---NRDHTVPLSDGALAILEMMK 296 LLT RP+E A+A+W++ID W + K R H V LS ++ +L M+ Sbjct: 244 LVLLTGGRPSEIAKAKWEDIDEKERLWAYQVQKGNKNLPEGRTHIVTLSRQSIELLNKMR 303 Query: 297 PLSG------GREFIFPSR-IKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 + F+F S K ++ +T+ A+ ++ L +HG+R + ST+LNE Sbjct: 304 HFNEVVNANIQSPFVFASVASKKTGHLSIETMRKAIIKSIGEDRLTTHGIRHLFSTSLNE 363 Query: 350 EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 + F D IE AL+H D+N +R +YN+++YLEQR M+Q WAD V+ Sbjct: 364 QNFNADWIERALSHKDRNRIRGSYNKANYLEQRFDMLQHWADYVEELA 411 >UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria RepID=Q3SF40_THIDA Length = 440 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 122/435 (28%), Positives = 197/435 (45%), Gaps = 35/435 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D++++ KP D + DG GL + I +G + W +Y P KQ T G YPA S Sbjct: 3 LSDSKLRTLKPADRVFSESDGGGLYIEIMPTGKRRWGLKYRIPTGKQET-IRLGDYPAYS 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQK-----EQVRNSQEAKTNTFL-------------- 108 L+DAR R + K L + + P ++ E + + F+ Sbjct: 62 LADARTWRDDCKALAGRGLSPMALKRGDPIPEDAAPAAKELAQFFIRNWCMKAVEKAKAK 121 Query: 109 ----------LVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKA 158 W + +I R L++D PAIG I ++ ++ Sbjct: 122 EAEAKAADTVEAFAWRWYAEIVEPANSNPRNIKRILDKDAIPAIGSKQIADVTVTDILAI 181 Query: 159 VQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ 218 ++ RGA + + + + YA P+ I F K ++ P++ Sbjct: 182 TDKIKNRGADQMALQTRNVLKRLFAYAIAREKTTFNPAAAIEAKFIAQAKSRDVALSPEE 241 Query: 219 LPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR 278 + +L+ + +S+ + + +L + R +E EA+W+E+D +EW IP RMK ++ Sbjct: 242 IGRLLRAIYQSSMKRAHKLALHLLILCMVRKSELTEAKWEELDLEKAEWAIPGERMKKDK 301 Query: 279 DHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSH 337 H VPLS A+A+ E +K L+ G E++FPSR +P+ +N ++ V H Sbjct: 302 PHLVPLSRQAVAMFEELKGLASGSEWVFPSRSSLKKPIAHNALNTVVRALEADVRDFVIH 361 Query: 338 GLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 R AST L+E GF D IE ALAH K +R YNR+ Y +QRR M+QWWAD V + Sbjct: 362 DFRRTASTHLHEAGFNSDWIEKALAHETK-GIRGVYNRAQYADQRRDMLQWWADFVDSQI 420 Query: 398 S---GSIVLTHLSKI 409 G +++ K Sbjct: 421 QDGRGKVIIGPFGKA 435 >UniRef50_C8NCE3 Phage integrase family site-specific recombinase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCE3_9GAMM Length = 401 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 201/398 (50%), Gaps = 7/398 (1%) Query: 8 LTDTEIKAAKPKDADYQLY-DGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT+T+ + A D + + Y DG GL L + S G K W+ Y P +K++ SFG YP V Sbjct: 3 LTETQCRTAAAPDKNVRKYFDGGGLCLQVTSDGKKYWRLYYRMPGSKKQQTVSFGVYPKV 62 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK--TSVTE 124 SL AR+ R E K+L+A+ IDP+ K+ ++ A NTF VA+RW + + Sbjct: 63 SLKQARQRRDEVKLLIARGIDPKLAAKQLRQDRTVALENTFADVAKRWLEHRAEVKKWGK 122 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + LER ++P IGD +TEI+ +++ +Q +QA G +ET +L +V Y Sbjct: 123 QHQRATRSMLERYMYPRIGDYPVTEIEPTQILRVLQELQAAGKIETSHKLLSATTQVFRY 182 Query: 185 AQNT-GLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQ 242 A T + P+ ++ + + I P ++ +L+ + + S R L Sbjct: 183 AMITIRICKYNPAADLSELLVTGKSVPFRHITDPGEIGRLLVALDEYTGSPQARGLARLH 242 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD-HTVPLSDGALAILEMMKPLSGG 301 L TRP E RWDEIDF W+ ++ + VP S A I+ ++ ++G Sbjct: 243 PLIFTRPTEIRLMRWDEIDFEQRLWRRSDDETVRRKNVNAVPFSRQAWEIIAGLRLVTGR 302 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 +++F + + N+P ++ LK G +V HG R AST L+ + + +E L Sbjct: 303 TDYVFCNIHR-NKPFSAGAEGKVLKSIGYHEKIVPHGWRHTASTLLHNQDYDSIWVEKQL 361 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 H DKNEVR YN +DYLEQRR M+Q WAD + + Sbjct: 362 GHTDKNEVRGTYNHADYLEQRRKMLQEWADYLDMLKAN 399 >UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID=B2UB26_RALPJ Length = 415 Score = 323 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 115/406 (28%), Positives = 201/406 (49%), Gaps = 14/406 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT T I AKPK+ Y+L DG GL +L+ GSK W+++Y L+ +R G+YP + Sbjct: 7 KLTPTRINNAKPKEQPYKLTDGGGLFVLVHPGGSKAWRYQYM--LSGKRRSVLIGSYPEI 64 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ-----EAKTNTFLLVAERWWNVKKTS 121 +SDAR AE + ++ + DP EH+++ + + F + +W + + + Sbjct: 65 GVSDARDRHAEYRAMVEQGTDPAEHRRQDKAERKAKESLQEDEGLFKAFSLKWIDERLAT 124 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 TE Y I LER ++P IG ++ ++K L++ ++ R T + I ++ Sbjct: 125 KTEGYRSQIKSRLERFVWPVIGRKALEDVKPSHLLEIIEA--RRATPNTAEGVRVIIQQI 182 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 YA L+++ P+V + P+ ++ + +L + +T Sbjct: 183 YNYAIQKLLVESNPAVPLRGVITVPKAEHHRHLSESELGAFWRALGRQGAHPATTAAARL 242 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + ++ R +E A+W E D + ++W IPA RMK R H V LS A+ +LE+M+ +SG Sbjct: 243 LVYSMCRKSEVLRAKWAEFDLDKAQWDIPAERMKSRRPHRVYLSRQAIELLEIMRAISGD 302 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAA 360 ++ PS + P+ T+N KR G HG R A+T L E GF DV+E Sbjct: 303 GVYVLPSVKIASVPLAEATLNHLFKRLDFGVPEFSPHGTRGTAATLLREHGFSRDVVELL 362 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA----ADSGSIV 402 LAH ++++ +Y+ + +RR +Q+ AD + + +G++V Sbjct: 363 LAHTERSQTAASYHHHELEAERRKALQYLADEIDRQAAISAAGNVV 408 >UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR6_9SPHN Length = 428 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 130/410 (31%), Positives = 195/410 (47%), Gaps = 17/410 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I++ P + DG GL + + +G + W F Y ++ + G YP +S Sbjct: 2 LTDTLIQSIIPAARPIKKADGGGLNICVLPNGRREWCFSYRFHH--KQKSITGGDYPLMS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 + AR R E K L+ DP +++ Q +T TF +A W K+ ++ YA Sbjct: 60 IDRARVWREEMKAALSAGKDPANIKRQLKYEDQAERT-TFRQLAYEWMVAKRPGWSDRYA 118 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I R LE DIFP IG +S+ I ++ A++ ++ RGA E R+ +E+ + Sbjct: 119 GVIERRLEADIFPTIGKLSVRSILPRDMLGALKCIEDRGATEMAHRVRAYCSEIFRFGIP 178 Query: 188 TGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G + P ++G K + I +LP + + S + W +LT+ Sbjct: 179 DGRVLTDPCRDLGTVMRKRAAVTHRSKIPIKELPHFYAALNADTGSRLSHLALRWTILTM 238 Query: 247 TRPAEAAEARWDEIDFNAS---EWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS---- 299 R E A+W E + W+IPA RMKM +H VPL A+A+L +K L+ Sbjct: 239 VRTTETRHAQWSEFEGLGGPEPLWRIPAERMKMRVEHLVPLPPQAVALLREIKELNVYGK 298 Query: 300 ----GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPP 354 +++FP ++S + L+R G+G HG RSIAST LNE G F P Sbjct: 299 YGNERFGQYLFPVIGNQGDTISSNRMLVLLQRLGVGDKATVHGFRSIASTVLNETGLFKP 358 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 D IE LAHV VR YN + YL RR M++WWAD + A+ S + Sbjct: 359 DWIELQLAHV-PGGVRAVYNAARYLSHRRQMLEWWADYLDKAEQASAAIA 407 >UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enterobacteriaceae RepID=INTB_ECOLI Length = 396 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 207/380 (54%), Gaps = 21/380 (5%) Query: 31 LTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQE 90 + LL+ +GSK W+ +Y ++ + G YP ++L+DAR R E++ LLA +DP + Sbjct: 1 MHLLVHPNGSKYWRLQYRYE--GKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGD 58 Query: 91 HQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEI 150 +K +++K TF VA W K +ED+A + +SLE ++F A+G+ +I E+ Sbjct: 59 KKKNDK--VEQSKARTFKEVAIEWHGTNK-KWSEDHAHRVLKSLEDNLFAALGERNIAEL 115 Query: 151 KAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKN 210 K L+ ++ V+ G LE RL QR +M YA +GLID P+ + A +++ Sbjct: 116 KTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQH 175 Query: 211 MPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIP 270 P++ ++P+L+ + + + TR LL R +E ARW EIDF AS W IP Sbjct: 176 RPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIP 235 Query: 271 AAR------------MKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNS 318 R KM H VPLS ALAIL+ +K G + IF ++PM+ Sbjct: 236 PEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSE 295 Query: 319 QTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAY-N 374 TVN+AL+ G + HG R++A ++L E G + D +E ++H+ +N VR AY + Sbjct: 296 NTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIH 355 Query: 375 RSDYLEQRRPMMQWWADLVK 394 ++++LE+RR M+QWWAD + Sbjct: 356 KAEHLEERRLMLQWWADFLD 375 >UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WP11_VEREI Length = 387 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 139/396 (35%), Positives = 201/396 (50%), Gaps = 21/396 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT ++AAKP+ Y+L D GL L + +G K W+ Y R ++ +++G +P VS Sbjct: 3 LTVRAVEAAKPRHKGYKLADSVGLYLFVTPAGGKSWRANYLRE--GKQATRTYGRWPDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE-DY 126 L++ARK A ++ + P +F +A W +K +++ + Sbjct: 61 LAEARKAHAAAR----DGVVP-----------ATVAVPSFETIARAWLKLKLPTLSNGKH 105 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + +LER +FP IG I I LV VQ VQ G +ET R+ RI V YAQ Sbjct: 106 QSQVANTLERFVFPKIGKRPIDTIHRPELVDVVQAVQLDGRVETAHRVAGRIAAVFDYAQ 165 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKN-MPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + GLI++ P+ ++ + + K M SI P + LM + T T Sbjct: 166 DAGLIESHPASHLVRVLHSRKVKKPMASIAPAEAGALMRAITDYD-EPVTGLGLQLLAHT 224 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E RW E + + W IPA RMK+ H VPLS A AI+ ++ L+ REF+ Sbjct: 225 FVRVGELRAMRWSEFKEDGAVWVIPAERMKLRLPHVVPLSLQAQAIVGQLRLLNAEREFV 284 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALAHV 364 S ++P P++ T AL R G G + +HG R++AST LNE GF DVIE LAH Sbjct: 285 MDSPLRPGHPLSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHK 344 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 + + VR AYNR+ YL QRR +MQWWA + AA + S Sbjct: 345 ETDAVRAAYNRAQYLPQRRELMQWWAQWLAAAQTSS 380 >UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root RepID=A5EUW8_DICNV Length = 399 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 114/394 (28%), Positives = 183/394 (46%), Gaps = 9/394 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ KP + Y++ D GL ++ +GS LW+ RY L +R + + G YPAVS Sbjct: 2 LSDAKLRKLKPTEKKYKIADSHGLFAVVMPNGSILWRMRYV--LAGKRRELALGKYPAVS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS+AR++ + + + +DP + V ++ T E + K + Y Sbjct: 60 LSEARQIVLLYREQIERGVDP---HAQHVERHKKQDGVTVAEAVELLLSEKAKYCSASYL 116 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ- 186 + L + G ++ E+ + + G T R+ E+ + Sbjct: 117 ESCRSRLSNHVLSRFGARALAEVSEDEWRALINWLDNGGKNYTAIRVQDLAGELYKTVRL 176 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TGL A P + I +K +N P I P + +L+H + + + L Sbjct: 177 KTGLKIANPILEIRGTVKKKPAQNYPRITNPARFGELLHAIDYFNGRWQVYLALKFLPLV 236 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E W E+DF + W IPA ++KM R H VPLS A+AIL + L + + Sbjct: 237 FCRQIELRRMVWQEVDFERALWCIPAEKIKMRRAHLVPLSTQAIAILRQAEQLRC-SDLV 295 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 F P QP++ T+ +AL+ G G +V HG R A+T LNE G+ +++ LAH Sbjct: 296 FCGVRNPRQPISVNTIGSALRTLGFGHDEMVGHGFRGTAATLLNELGWDSHIVDFQLAHW 355 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 ++ V AYN ++YL QRR MMQ WAD + Sbjct: 356 QRSSVSSAYNHAEYLTQRREMMQAWADYCDELKA 389 >UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L9U1_9GAMM Length = 399 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 121/388 (31%), Positives = 195/388 (50%), Gaps = 6/388 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ AKP + Y+L DG GL L I+ +GSKLW++ Y L ++ + G+ VS Sbjct: 3 LTDFKIRGAKPAEKPYRLSDGGGLFLEIRPNGSKLWRYAYR--LDSKQRLLAIGSLQDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR ++K + DP +K S+E+ NT AE W++ + S + + Sbjct: 61 LADARAAMRQAKSQVKLGQDPVLQRKIAKARSEESALNTVAENAEDWYSGAEKSWSASHR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D R L++ I P IG I E+ ++K ++ + G Q ++ V +A Sbjct: 121 DRARRYLDQRILPDIGKWPIREVTPADVLKLLRKAEKAG-PHVAIVTRQTLSSVFEHAIV 179 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 DA P+ + +A +KP + + + +L+ + T + T LT Sbjct: 180 NLRADADPTHPVRRAIKKPPVMHAVAHSAATMGKLLAGLDTYPGNRVTAIAIELLALTFV 239 Query: 248 RPAEAAEARWDEIDFNAS--EWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E A+W ID+ A KI A MK R H VPL+ A+A+L ++ ++G ++ Sbjct: 240 RTKELRTAKWANIDWEAESPLLKIDAGEMKKRRKHWVPLAPRAVALLRELQEITGAGTYL 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FP++ P +PM+ + VN LK G+ + H R+ AST L+E G+P V++ LAH Sbjct: 300 FPNQRDPKKPMSREAVNMGLKYLGM-DEISGHDFRATASTWLHEAGYPSAVVDMQLAHAK 358 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLV 393 N+ AYN +++L R MM WAD + Sbjct: 359 TNKTGAAYNHAEFLPDRIKMMDRWADHL 386 >UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonadaceae RepID=A1W8P6_ACISJ Length = 413 Score = 320 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 123/414 (29%), Positives = 196/414 (47%), Gaps = 14/414 (3%) Query: 8 LTDTEIKAAK--PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD + K A P + D GL L + SGSK W ++ Y + + + G+YP Sbjct: 2 LTDKQCKNAICPPDKKRARFTDSLGLYLEVSPSGSKRWFWKTY--FDGKEGRMALGSYPT 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 SL+DARK R +K+ A +DP + +K + + +TF +A W + ++ Sbjct: 60 QSLADARKARDIAKLKKADGVDPVQERKLEKLKGSRSGGDTFQAIALEWHGRQVDQWSDT 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A R LERD+FP IGD +T I+ L+ +Q ++ RGA+ET R ++ Y Sbjct: 120 HAGRTKRQLERDLFPWIGDRQMTSIEPMELLATLQKIEERGAMETADRALMLCRQIWRYW 179 Query: 186 QNT-GLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 T G +V + + N P+I P + +L+ M S + R + Sbjct: 180 LPTAGNTQRDITVGLKNRLTPYRGTNFPAIVEPKRFGELLRAMHVYKGSHTVRTALLLAP 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKM-------NRDHTVPLSDGALAILEMMK 296 L RP W E+D +A+ W IP+ +MK H VPL A+ +L ++ Sbjct: 240 LLYQRPGNLRAMEWAEVDLDAALWTIPSMKMKRTKTEKEQGEPHAVPLPTQAVELLRNLQ 299 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 L+G ++FP + +PM+ +V +AL G G HG R+ A T L + P Sbjct: 300 ALTGRGTYVFPGQRDHERPMSDNSVRSALYSLGFGTEQSWHGFRASARTMLVDQLDLDPL 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 IEA LAH K+ R+YNR+ YL++R +Q WA+ + G+ V+ + + Sbjct: 360 AIEANLAHAVKDSNGRSYNRTQYLKKRYDQVQMWANYLDRLRLGAEVVPLVRQA 413 >UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria RepID=B2I529_XYLF2 Length = 410 Score = 320 bits (819), Expect = 9e-86, Method: Composition-based stats. Identities = 118/391 (30%), Positives = 192/391 (49%), Gaps = 9/391 (2%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 PLTDT +KA KP+D Y + D GL++ + +G +W+FRY L + K + G YPA+ Sbjct: 2 PLTDTALKALKPRDRIYSVADERGLSVEVYPTGGIVWRFRYR--LAGRYEKLTLGKYPAL 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL +AR R E+ L+A P ++ + +A T AER++ ++ +D Sbjct: 60 SLRNARLKRDEAASLVAMGTSPARQKQLAKVTAADAMT--VRDFAERFFREIQSRDRKD- 116 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + R L++DI P +GD + E+ A + + + +G T ++ + + YA Sbjct: 117 STMPRRYLDKDILPFVGDKPMREVTAEEIRSLIWRKKEQGFDATAGQIRGVLKRLCDYAV 176 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 GL+ P + + ++ PD++ + + + I + LLT+ Sbjct: 177 TCGLMPTNPVLALPMRHVYKAVSRDRALSPDEIRLFLRAVWASRIRRQFKLALHLILLTM 236 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R +E ARWD + + ++W IPA K + H V LS A+ + E ++ L+GG + Sbjct: 237 VRKSELLLARWDHVHLDQAQWHIPAEHSKTGKPHIVYLSRQAVVLFEALRVLAGGSALVM 296 Query: 307 PSRIKPNQPMNSQTVNAAL-KRAGLGGV--LVSHGLRSIASTALNEEGFPPDVIEAALAH 363 P +P +N AL K G+ H LR AST L+E G+ DV+E AL H Sbjct: 297 PGSGTLTRPFAHNALNHALGKAMQWQGIHAFTIHDLRRTASTWLHEHGWASDVVEKALNH 356 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 VR YNR++Y +QRR M+Q WAD ++ Sbjct: 357 SIG-GVRGVYNRAEYADQRRQMLQCWADFIE 386 >UniRef50_D0CDZ4 DNA integration/recombination/inversion protein n=4 Tax=Acinetobacter RepID=D0CDZ4_ACIBA Length = 402 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 133/406 (32%), Positives = 202/406 (49%), Gaps = 16/406 (3%) Query: 2 ARKTKPLTDTEIKAAKP-KDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 R L+ ++K AKP + Y+L DG L L I SGSK W F Y RP +R S Sbjct: 3 TRGINKLSALQVKKAKPDPNKMYKLSDGGNLYLRIDQSGSKYWIFNYTRPFLGKRNDLSL 62 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL DAR +R + K L+ + IDP + E Q+ NTF ++AE W + ++ Sbjct: 63 GTYPEVSLEDARTIRDKYKKLIKQGIDPAMERIETKSQKQKEAENTFRVIAELWLHKREL 122 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTL-VKAVQPVQARGALETVRRLCQRIN 179 +D ++ R L D++P I +++ ++ L K + + RGAL +RL +N Sbjct: 123 EQKQD--EETIRRLNHDVYPYISELTFPQLTLEILETKVFKRIVERGALSVAKRLKSDLN 180 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQL-PQLMHTMRTAS-----ISM 233 ++ A+ LI P +I KPQ N P++ +Q +++ + S + Sbjct: 181 QIFKSARKKKLIQYNPIEDIE--LPKPQAGNFPAVTEEQDLAPMLNKIWNYSKLYPRCLL 238 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 +T+ +LT RP E + + +K A++ K + H VPLSD A ++E Sbjct: 239 TTQVALKISVLTFQRPGEIRMLKKEFYYREERCFKFTASKTK--QLHIVPLSDQAFDLIE 296 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGF 352 + L E+IF R ++ T+N+ALKR G GG +HG R+ A T L+E Sbjct: 297 SIIDLHPYSEYIFVGR-DGKTVISDNTINSALKRLGYGGEQTAHGFRATARTMLDEILEQ 355 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 D IE LAH K+ AYNR+ +L RR MMQ WAD +++ S Sbjct: 356 RVDFIEHQLAHKVKDNNGTAYNRTKFLNNRREMMQEWADYLESLLS 401 >UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J426_COMTE Length = 416 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 125/417 (29%), Positives = 201/417 (48%), Gaps = 14/417 (3%) Query: 8 LTDTEIKAAK--PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD + + A P + D GL L + +GS+ W ++Y + + + + G YP Sbjct: 2 LTDAQCRNAVCSPGAKRERFSDAGGLYLEVSPAGSRRWFWKYRK--DGKEGRLALGRYPE 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL+ ARK R +++ ++ IDP + +K + + +TF VA W+ + + Sbjct: 60 VSLTAARKARDAARLQKSEGIDPAKARKLEKLVNPTGVADTFKAVALEWYEKQVPRWSPG 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A+ + R LERD+FP IG+ + +I+ L+ +Q V+ARGA+ET R +V Y Sbjct: 120 HAERMHRQLERDLFPWIGEREMAQIQPMELLAVLQKVEARGAVETADRALMLARQVWRYW 179 Query: 186 QNTGLI-DAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 T + + + N P+I P + +L+ M R + Sbjct: 180 LPTASNTQRDITEGLKARLTPYRGTNFPAIVEPQRFGELLRAMYAYKGGPFVRTALLLAP 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAILEMMK 296 L RP W E+D +A+ WKIP+A+MK H VPL A+A+L + Sbjct: 240 LLYQRPGNLRMMEWAELDLDAALWKIPSAKMKRSVQEKENGEPHVVPLPKQAVAMLRELL 299 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 PLSG ++FP + ++PM+ +V AL G+G HG R+ A T L + P Sbjct: 300 PLSGRGRYVFPGQRDHDRPMSDNSVRTALYSLGVGEEQSWHGFRASARTMLVDQLDLDPL 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 IEA LAH K+ R+YNR+ YL +R +Q WAD + G+ V+ K +++ Sbjct: 360 AIEANLAHAVKDANGRSYNRTKYLAKRFDQVQQWADYLDRLREGAAVIEFPQKNKVM 416 >UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JWM6_PASHA Length = 404 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 140/405 (34%), Positives = 215/405 (53%), Gaps = 9/405 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQR-TKQS 59 M KPL+DT +K K + D +GL +L + +K+W + Y P T +R TK Sbjct: 1 MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKK-AKVWIYSYISPKTGKRSTKNR 59 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAER-WWNVK 118 G+YP +SL++AR R E L+ + +DP EH + R ++E + + + W + Sbjct: 60 IGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEKQESIQSFAYKWADWKLS 119 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 K + + LE +FP ++ + + + + R +T+ R+ + Sbjct: 120 KGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRLTDL-DRIMPDTLHRIAGNL 178 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 E++ YA G I+ P I KAF + P+I P++L + M ++ ++ + + L Sbjct: 179 IEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEELAEFMQDLQKSNRTPQIKLL 238 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-DHTVPLSDGALAILEMMKP 297 WQLL I RP EA +W +ID+ IPA RMK + H+VPL+ A+AILE MK Sbjct: 239 VEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKGGKNPHSVPLTKQAIAILEEMKK 298 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRA---GLGGVLVSHGLRSIASTALNEE-GFP 353 +G + IF R N+P NSQTVN A+KR G+LV+HGLRSIAST L+E Sbjct: 299 YNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKYKGLLVAHGLRSIASTYLHERFTTE 358 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 VIEA L+H +K+ V AY+R ++L++RR +MQ WAD V+ S Sbjct: 359 TLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQEWADFVEQCKS 403 >UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IGA6_BORPD Length = 657 Score = 317 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 116/415 (27%), Positives = 203/415 (48%), Gaps = 23/415 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++ AK Y LYD D L+L++ ++G K W FRY ++ + + G YPA+S Sbjct: 17 LSDLIVRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRY--SWLGKQKRMALGGYPALS 74 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE--- 124 L +AR R +++ L+A+ IDPQ + ++ ++ A TF V + W ++ + E Sbjct: 75 LREARAERDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQ 134 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 I R +D+ P +G +SI +I+ L+ + ++ R A T ++ N++ Y Sbjct: 135 STLSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRY 194 Query: 185 A-QNTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTMRTASI-SMSTRCLFMW 241 A ++ P+ ++ KP + P + +LP+ + +R + T+ Sbjct: 195 ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRL 254 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-----MNR---------DHTVPLSDG 287 LT R E A ++ D + W IP +K M + + VPLS Sbjct: 255 LFLTGVRTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ 314 Query: 288 ALAILEMMKP-LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 A+ I+ + + ++++ R + + ++ T+N A++ G G L HG+R STA Sbjct: 315 AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA 374 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 LNE G+P ++A L+H D N+V AYN + Y+E RR MMQ WAD + + G + Sbjct: 375 LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGEV 429 >UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVD1_ACILW Length = 399 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 118/395 (29%), Positives = 189/395 (47%), Gaps = 6/395 (1%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL++ + + P++ DY+ DG GL L+K SG K WQ+RY K GAY Sbjct: 7 KKRPLSEKTLSSLVPEEKDYRELDGVGLYFLVKKSGVKNWQYRYKNSEGKW-AWMGLGAY 65 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P VS AR+ E L+K + +K + +E ++ F + W + K + Sbjct: 66 PQVSAQLARQKAREFTSALSKGES-LKSKKVLLEERKELESFYFENLMREWLDTKSSKWG 124 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQAR-GALETVRRLCQRINEVM 182 E +S+E+ I P G + EI Q +Q G + +L + Sbjct: 125 EATYTKAQKSIEKHIIPVFGQGNYKEITPKEWFDFFQGLQRTLGIHTQIEKLVSYVRGCY 184 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 +A+ G I++ P + K + + NM + D+LP L+ +R + + Sbjct: 185 DWAKFKGKINSNPIEGMSKHLDAYESGNMDFVTVDELPALLKKIRN-NKKRAIGIGLELL 243 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 ++ RP E A+W++ DF + W PA K ++H VPLS + +L ++ + Sbjct: 244 MMLFPRPGELRMAKWEQFDFKKALWTKPAEMTKTRQEHQVPLSKQVITLLTELRSIQPES 303 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPD-VIEAAL 361 EF+FPSR+ N+ ++ T N AL R G G HG R +AST LN+ + VIE L Sbjct: 304 EFLFPSRLSVNKTISDMTFNLALNRLGYKGKQNPHGFRHLASTILNDAFSDQEQVIEVCL 363 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 AH K V+ Y++S +L++RR +MQWWAD + Sbjct: 364 AHKKK-GVKGVYDKSQHLDERRVLMQWWADYLDEL 397 >UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcus RepID=A3ZAX6_9SYNE Length = 426 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 126/405 (31%), Positives = 189/405 (46%), Gaps = 14/405 (3%) Query: 8 LTDTEIKAAKPKDAD--YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 L+D I+A +P + +D DGL L + SGSK W+ Y R + G YPA Sbjct: 2 LSDKAIQALRPDPDRPGTKHHDRDGLYLWVARSGSKTWRKDYRW--QGARRTFTIGPYPA 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L+DARK E + IDP+ Q RN E+ + F+ +A+ W+ S + Sbjct: 60 VRLADARKQALELNTWIKAGIDPRTQVPTQQRNQAESSSRPFVQIAQAWFEHHSASWSPR 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTL-VKAVQPVQARGALETVRRLCQRINEVMIY 184 Y D+ L + PA+G + I I + + + P+ ARGA E RR V+ + Sbjct: 120 YCRDMREKLNHFVIPALGQLDIEAISRSDIETQLLAPILARGANEQARRCNDVTRRVIEH 179 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISM----STRCLFM 240 A + L P+V K + + I +LP+L+ + S+ Sbjct: 180 AVDLELRQDNPAVKARKVIAATRVTHYHRISWVELPELLEVIDRFERQRLAERSSLIALR 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +LT+ RP+E EARW E+D +W IPA RMK H VPLS A + +M +P++G Sbjct: 240 LMMLTLVRPSELREARWSEVDTEGRQWIIPAERMKTRVRHIVPLSSQARHLFDMQRPITG 299 Query: 301 GREFIFPSRIKPN----QPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 + +F + + M++ ++ L+R G G HG R T E P Sbjct: 300 HTDLVFHTPNHRGSGELRVMSNGCLSMLLRRMGFQGRQTPHGFRGFGQTNCIEQLKIPRV 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 V E LAH D N V RAY+ ++YLE+R M+Q WADL+ + Sbjct: 360 VTEKQLAHADGNSVSRAYDWAEYLEERSDMLQRWADLLDQVAVAA 404 >UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY9_9GAMM Length = 429 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 129/413 (31%), Positives = 193/413 (46%), Gaps = 17/413 (4%) Query: 1 MARKTKPLTDTEIKAA---KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTK 57 MA+++ LT E+K + DG GL LLI + +K W+ Y RP+T++ Sbjct: 1 MAKQSNKLTAKEVKNLSFDVSGAKKQRHPDGGGLYLLIDETEAKYWRMDYRRPVTQKYNT 60 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 + G YP +SL AR R E K +LA IDP E + + R + NTF A W ++ Sbjct: 61 LAIGTYPTISLEQARSKRDEFKKMLANGIDPAEQRNNKKREQLQTLENTFSKFAAEWLDI 120 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTL-VKAVQPVQARGALETVRRLCQ 176 +K D+ + R L RDI P IG + + E+ L + RGALE+ RR+ Sbjct: 121 RKHEGKVDH--ETIRKLNRDILPFIGKLPVAELTTEQLERDVTDALVERGALESARRIKS 178 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRT-----AS 230 IN V+ +I P+ +I +P K N ++ + +L L+ Sbjct: 179 IINMVLKLPLKRRIITYNPAPDI--ILPQPTKGNHNAVTDEKELADLLRKTWRLTKDFPR 236 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + T RP E W+ +DF A+ K N+DH VPLS A Sbjct: 237 TRIRTELAIKLSAYIYQRPGEVRTLLWESVDFENRCLSFAAS--KTNQDHIVPLSIQAYD 294 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTAL-NE 349 IL+ ++ L +++FPS ++ M++ T+ LKR G G +HG R+ A T L E Sbjct: 295 ILKELEELRTTSKYVFPSVKTSSECMSTDTLTQVLKRLGFKGKHTAHGFRATARTLLDEE 354 Query: 350 EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 + D++E LAH K+ AYNR+ +L +RR MMQ WAD + G V Sbjct: 355 IEYRTDIVEHQLAHKVKDPNGTAYNRTKFLRRRREMMQLWADYLDTLRQGGDV 407 >UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUF6_ARCB4 Length = 405 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 130/409 (31%), Positives = 213/409 (52%), Gaps = 22/409 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ KPLTDTEIK AK K+ DY+L DG+ L L++KS+G+K ++F + TK+R SF Sbjct: 1 MAKIVKPLTDTEIKKAKAKEKDYKLSDGENLYLVVKSNGTKFFRFDF--SYTKKRKSMSF 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL +AR+LR ++K L ++I+P E + +S +TF + E+W + + Sbjct: 59 GIYPDISLKEARELREKAKEQLKQNINPIEAK-----SSNFGNISTFKYITEKWLKLMTS 113 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + L ++PAIGD I+ I+ ++ +Q +Q + E R+ I Sbjct: 114 EWKHVTYELNENRLRMHVYPAIGDKPISSIEILDILNIIQKLQEKEYFEIAERILNVIER 173 Query: 181 VMIYAQNTGLIDAVPSVNIGK--AFEKPQKKNMPSIR-PDQLPQLMHTMRT----ASISM 233 + YA G +I K F K + ++ +++ +L+ +++ + Sbjct: 174 IYKYAVTYGYTKHNIIADIDKRTVFAKKIVIHRATLTKENEIKELLKDIKSYGELYKADI 233 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 ST RP W+E++F IPA +MK N+D +PLS AL IL+ Sbjct: 234 STIYALNIAPYLALRPYNIRLLEWNEVNFEKEYLDIPANKMKTNKDFVLPLSKQALEILK 293 Query: 294 MMKPLS-GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN---- 348 +KP S +++FPS +P + T+N AL + G + SHG R++ ST + Sbjct: 294 TIKPYSFDRSKYVFPSPTSNLKPFSDATLNHALMKLGYKDKITSHGFRAMFSTIAHEKIK 353 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNR---SDYLEQRRPMMQWWADLVK 394 E GF D+IE+ LAH + N+++ AYNR Y ++++ +MQWW D + Sbjct: 354 EHGFHSDIIESCLAHAETNKIKAAYNRESKMKYYDEKKGLMQWWTDWLN 402 >UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI75_9BACT Length = 398 Score = 308 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 114/404 (28%), Positives = 188/404 (46%), Gaps = 14/404 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT +++A + DG L L + GSK W R+ + +R G +P V Sbjct: 3 KLTFGKLRAL---NEPGLYGDGGTLFLKVSPGGSKSWVQRFT--IKGKRHDVGLGGWPVV 57 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 SL +AR+ +++ +A DP +++ S+ A TF VA +++ Sbjct: 58 SLQEARERAFDNRRAVAHGRDPLAEKQK---ASKAAAVPTFRAVARKYYEENLPRWKAGR 114 Query: 127 ADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 D W + +E+ FP GD+ + + +++ + P+ E R+L R+ ++ + Sbjct: 115 HTDRWLQVVEKYAFPVFGDVPVDRVGREDVLRMLTPIW-TAKPEYARKLRHRVRLILDWC 173 Query: 186 QNTGLIDAVPSV-NIGKAFE--KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 Q G + + IG A K++ S+ ++ Q + + + S+S + + Sbjct: 174 QAHGYVHTNIAGEQIGGALPSMPSVKEHHRSLPYAEVSQALDLIEASGASLSAKLCLRFL 233 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT RP EA A W+EI++ W IPA +MK +H VPLS A+ +LE + G Sbjct: 234 ILTAVRPGEARNATWEEINWETKTWTIPAGKMKAKAEHRVPLSREAMQVLERASRVRGES 293 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAAL 361 IFPS +K +P++ T+ L+ GL V HG RS T E P VIE L Sbjct: 294 PLIFPSSLKRAKPLSDMTLTKLLRDVGLREKTVPHGFRSSFRTWAGEQTNSPTPVIELCL 353 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 AH N + +AY RSD L++R+ +MQ W V ++V H Sbjct: 354 AHSVGNAIEKAYTRSDLLQKRQRLMQEWGRYVTGEGRANVVPLH 397 >UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepID=Q1QLT5_NITHX Length = 416 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 139/397 (35%), Positives = 211/397 (53%), Gaps = 14/397 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I+ AKP D +++ D GL L + ++G KLW+FRY + + G YP +S Sbjct: 7 LTDTAIRKAKPGDKPFKMADSGGLHLYVSTAGGKLWRFRYRYAD--KEKLLTIGPYPDIS 64 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L DAR R +K L DP +K + + + NTF +A W+++ K E +A Sbjct: 65 LVDARAARDAAKASLRDGRDPGVIKKLRKLANVTSTANTFEAIAREWYDLNKGQWVERHA 124 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 DD+ SLER++FP +G+I + +IKA ++ ++ ++AR A ET RR+ QR++ V +YA + Sbjct: 125 DDVLTSLEREVFPVLGNIPVADIKAPEVLAVLRGIEAR-AKETARRVRQRMSAVFVYAIS 183 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G DA P+ + KA K P+I D +++ +T+ LT+ Sbjct: 184 SGRADADPAATVQKAMAPMVKGRQPAITDLDAAREMLGKAEAEKAHPATKLALRIIALTV 243 Query: 247 TRPAEAAEARWDEI-DFNASEWKIPAARMKMN--------RDHTVPLSDGALAILEMMKP 297 RP W E D W+IPAARMK+ RDH VPLS AL +E ++ Sbjct: 244 VRPGTLITTPWSEWTDMEDGVWRIPAARMKLRLQHKDDDARDHWVPLSRQALEAVEALRT 303 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDV 356 L+G FP+ ++ M+ + L RAG V HG R+ S+ +NE + Sbjct: 304 LTGRGPIPFPNTRHAHRTMSENAIGYLLNRAGYHHRHVPHGWRATFSSVMNERFPADKPI 363 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 I+ LAHV K++V AYNR+ +LE+RR + Q WADL+ Sbjct: 364 IDLMLAHVPKDKVEGAYNRALHLERRRKLAQEWADLI 400 >UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacter baumannii SDF RepID=B0VTB2_ACIBS Length = 388 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 104/404 (25%), Positives = 189/404 (46%), Gaps = 24/404 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++K+ KPK++ Y + DG+GL + + +G K W Y + ++ ++ G YP + Sbjct: 2 LSDAQVKSLKPKESRYSVADGEGLNISVFPNGKKKWVLSYRQ--NGKQNQKMLGEYPVMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 +AR + K+ + A + V E W ++ K+ T Sbjct: 60 CKEARLQARQLKL---------------EYQGKVANSPPVHKVIEEWLSIMKSQWTSKKY 104 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + ++ I E++ + K ++ + A+G LET R + +V +A Sbjct: 105 YDTVEYRLAYLTEDFKNLPINEVERKHISKKIKEIVAKGTLETASRALRLGKQVFDFAIA 164 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 + D P + + + + P + ++P+ M+ + S + + T T Sbjct: 165 SDYTDRNPCTLVEDVIPEYESDSHPCLPASEMPEFFRRMQASHSSSIVKMAMLLVCYTGT 224 Query: 248 RPAEAAEARWD--EIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E +ARWD E+DF W IPA RMK ++ VPL A+ + ++ + +I Sbjct: 225 RITELLKARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQIYALFKELESVKIDDGYI 284 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHV 364 F R KP + M S++V +KR G +V+HG RS+ ST NE F +VI+ +AHV Sbjct: 285 FKKRGKPYEYMTSESVLTMIKRMGYEDKMVTHGFRSLFSTHANESKLFRGEVIDYQIAHV 344 Query: 365 DK----NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 +K ++ + YNR++Y ++R +M W+A+ V+ G+ + Sbjct: 345 NKSTKADKTSKIYNRAEYWDERVELMTWYANEVEGWIKGAYLAP 388 >UniRef50_A7H3V7 Putative site-specific recombinase, phage integrase family n=2 Tax=Campylobacter jejuni RepID=A7H3V7_CAMJD Length = 399 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 109/401 (27%), Positives = 187/401 (46%), Gaps = 19/401 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L DT+IKA K KD Y + D D L L I SG K + F Y P T + + + G YP ++ Sbjct: 2 LNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTLN 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++ARK R KV LA++ + +E TF +A +KK ++E Sbjct: 62 LANARKQRDNLKVNLAEN-----------DSIREKSEITFKELALEKMELKKLELSEKTY 110 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 L+R F G+I + +++ ++K+ + + E + +NE+ + Sbjct: 111 KSYVSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTLLNEIFRHGVI 170 Query: 188 TGLIDAVPSVNIGKA---FEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 I + P N+ + K K + + ++ L+ + +S + M+ LL Sbjct: 171 KEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLL 230 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T R A+W++ID W IP MKM R HT+PL+ + +L+ K +S + Sbjct: 231 TAQRSFSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGY 290 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE----EGFPPDVIEA 359 +F S ++ ++ T+ + +R G HG R++ ST +E D+IE Sbjct: 291 LFYSLRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMSSDIIEL 350 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 LAHV+KN+++ AYN + L+++ +MQWW D + + Sbjct: 351 CLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAELN 391 >UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE42_ECOK1 Length = 418 Score = 303 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 111/402 (27%), Positives = 193/402 (48%), Gaps = 17/402 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY--PA 65 LTDT++K KP+D Y++ D DGL + + +SG+ +++ Y + +R G Y Sbjct: 2 LTDTKLKNLKPQDKLYKVSDRDGLYVAVLTSGTVSFRYDYR--INGRRETLVIGQYGRDG 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL++AR+ +K LL P +++ ++ + A+T F + + + K + + Sbjct: 60 ISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAET--FAVHTDSYM--KHVILADS 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 ++RDI P +G+ + EI + + RG T + + I+ V +A Sbjct: 116 TRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + G P+ +I + K ++ P+++ T+ + + L+T Sbjct: 176 NDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLIT 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 + R E A WDEIDF W IP+ RMK +R H + L A IL ++ +GG E++ Sbjct: 236 MVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYL 295 Query: 306 FPSRIKPNQPMNSQTVNAALKRA--------GLGGVLVSHGLRSIASTALNEEGFPPDVI 357 P R +P+++ +N+ + R H +R AST L+E G+P D I Sbjct: 296 VPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWI 355 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 E ALAH K VR YN+++Y QR M+Q WAD++ + +G Sbjct: 356 EKALAHEQK-GVRAVYNKAEYARQRAYMLQQWADMIDSWING 396 >UniRef50_A6Q4N1 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4N1_NITSB Length = 412 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 107/414 (25%), Positives = 194/414 (46%), Gaps = 22/414 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + +PL D +++ AKPK+ +Y+L DG+GL +LIK +G K+++ Y +R + Sbjct: 1 MPKSIRPLNDLQLRNAKPKEKNYKLRDGEGLYILIKPNGRKIFRLDYVYA--GKRNTYTI 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTF-LLVAERWWNVKK 119 G YP +SL+ ARK++ E K L+ IDP +++EQ R + F V ER+ K Sbjct: 59 GDYPQISLAQARKIKYEVKELIKNGIDPNRYKQEQKRIKELEANKKFTSFVIERFIQHKA 118 Query: 120 TSVTEDY-ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPV---------QARGALE 169 V++ + + I P IG++ I E+ ++K V+ ++ G Sbjct: 119 KEVSKARLQKNYINTFANYITPFIGEVKIDEVTKQDIIKIVKNTYSTKLQKDNRSTGKTY 178 Query: 170 TVRRLCQRINEVMIYAQNTGLIDAVPS--VNIGKAFEKPQKKNMPSIRPDQLPQLMHTMR 227 R + + + + +A + P+ ++I K + ++ +++ ++ + Sbjct: 179 KAREVYRLLKSLFDFAIHNDYTQTNPAVGIDIDSLIPKHKPTRHKAVTNERIKEIYQKIC 238 Query: 228 TASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN-RDHTVPLSD 286 + + R + LT R A +WD DF+ PA MK + +PL+D Sbjct: 239 SLQ-NPYFRLPLQYIALTAVRFGNVANLKWDYKDFDKRVIIYPAEAMKTKNQPFRIPLTD 297 Query: 287 GALAILEMMKPL-SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST 345 + +++ K + S E +F S I ++P++ T+ LK HG RS T Sbjct: 298 AIVKVIQQAKAIASPYSEIVFGSPINAHKPISDNTLRKVLKIDLNEPEQDLHGFRSSFET 357 Query: 346 ----ALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 E G + IEA L H ++V ++Y RSD+LE R+ ++ WWA+ + + Sbjct: 358 IALEHQKEHGCSFEAIEAQLHHNIGSKVTQSYLRSDFLEDRKELLNWWANYLNS 411 >UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJJ0_ACIJU Length = 406 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 121/405 (29%), Positives = 207/405 (51%), Gaps = 19/405 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+DT+IK KP++ Y++ D + L + ++ +G K+W+ +Y L + S G YP+VS Sbjct: 2 LSDTKIKNLKPQEKMYRILDAERLYIEVRPTGKKVWRLKYT--LHSKEGTISLGEYPSVS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++ARK + E KVLL I+P + +++ + + A +NTF +AE + ++DY Sbjct: 60 LAEARKKKEEIKVLLKDGINPVQEKRKLHQENLIANSNTFKAIAEEYIVEGMKYKSKDYI 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQAR--------GALETVRRLCQRIN 179 D RS+E+DI+ AIG I E+ + ++ ++ R + I+ Sbjct: 120 DQFKRSMEKDIYKAIGHKPIREVTSADILSILKNTITRVRKLSHYGTGEAAANQNRLFIS 179 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 VM YA T + P+ + A E P+ ++ + D+ +L + + + R Sbjct: 180 LVMKYAIVTLRAENDPTYAVKNAIESPETEHARPLDKDERIRLRTRLELYGGTTTVRNAC 239 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPA-------ARM-KMNRDHTVPLSDGALAI 291 + + T+ R +E +W +DF + P R K N H VP+SD A+ Sbjct: 240 LAMMYTMLRASEIRRMQWSYVDFEERLIEFPKASRRRKQERSNKKNHIHLVPMSDQLFAL 299 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG 351 L+ +S + ++F + K ++ + T+N AL G+ + +H R+ AST LNE+G Sbjct: 300 LKEQFEISQYQTYVFSAPFKNDEMLARTTLNRALVFIGMP-EVTTHDFRATASTLLNEKG 358 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 + PD I LAHV++N+ R YN + YLE RR M+Q WAD+V + Sbjct: 359 YKPDWINKQLAHVEENKTRATYNHAKYLESRRKMLQDWADIVDSW 403 >UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N3S0_9GAMM Length = 397 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 118/392 (30%), Positives = 197/392 (50%), Gaps = 15/392 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGS---KLWQFRYYRPLTKQRTKQSFGAYP 64 L+D+ I++ K D + D DGL L ++ S K++ FR+ K+ + G Y Sbjct: 2 LSDSLIRSLKLGDKK-RHTDRDGLVLELRPSKKQLKKIFIFRFQW--DKKPQTITIGDYR 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +V L AR + + ++ IDP+ + + TF +VA++W+ K + + Sbjct: 59 SVGLGAARDIALAYRNMVNSGIDPRS-----KNVEADQEKITFEVVADQWFQKYKGTWKD 113 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + +SL RDI P IGD I +I L+ ++P + G + RL R+ + + Sbjct: 114 FARNRHSKSLSRDIIPLIGDKPIDDITKADLLFIIKPHEDLGHHDVAHRLYARLQSIFEF 173 Query: 185 AQNTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 A + L + P + + KA KP+ N P+I + ++M ++ + + + Sbjct: 174 AVGSSLTENFPFIGLKKALIPKPRVINQPAISSNNAHEMMRVIKQTNSTKIVKVYMELLA 233 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 TRP E EA+W E D SEW IPA RMKM H VPL+ L +L+ ++ ++G Sbjct: 234 HLFTRPTELREAKWSEFDLQKSEWNIPAERMKMGIPHWVPLTPHVLNLLKELRLITGFTP 293 Query: 304 FIFPSR-IKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 ++F S +K +P++ +V L AG +HG RS+AS+ L+E+G F D IEA L Sbjct: 294 YLFSSPALKKAKPISEASVRKLLHNAGFKNRHTAHGFRSLASSVLHEQGNFRSDAIEAQL 353 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 AH + VR Y R+D+ +RR +M W++ + Sbjct: 354 AHKVQ-GVRGVYLRADFKAERRELMHWYSSWL 384 >UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWJ5_ARCB4 Length = 410 Score = 300 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 118/412 (28%), Positives = 183/412 (44%), Gaps = 21/412 (5%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K L D ++K AKP Y L+DG GL L + + +K+W+FRY +R K SF +Y Sbjct: 3 KNNQLQDIQVKQAKPTKETYYLFDGLGLYLEVTPNNAKIWKFRYTY--NGKRKKTSFQSY 60 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P VSL ARK R LL IDP E+ KEQ Q T++F + +W ++K+ Sbjct: 61 PKVSLKQARKKRDNYNELLFDGIDPIEYYKEQKELKQIEDTSSFKNIFTQWLEMEKSKSG 120 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 +E DI P IG+ I +IK + + + + A T +L + + Sbjct: 121 LAQYQWKKTRIENDILPFIGNKKIKDIKIQDVTNVL-IEKNKTAPVTASKLFGYLKSIYS 179 Query: 184 YAQNTGLIDAVPSVNIGK--AFEKPQKKNMPSIRPDQL-PQLMHTMRTASISMSTRCLFM 240 YA+ G I+ +I K Q + P I + L++++ S + Sbjct: 180 YAKTKGYIEINLLSDINKTHIISSSQVISYPKITEKENLKDLVNSIYNYQGFYSVKNALK 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN----RDHTVPLSDGALAILEMMK 296 L R +W IDF+ I MK+ D +PL+D + IL K Sbjct: 240 LVLHLPLRAGNLCNLQWSNIDFDNKLLIISRDEMKVKDKNFDDFRMPLTDEVINILNEQK 299 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG-----VLVSHGLRSIAS----TAL 347 +G ++FIF P+N ++ N ALK G + HG R T Sbjct: 300 SYTGYQKFIFLG-TNNRTPINVESPNKALKIMGFDDEVNGRKITLHGFRGTFRSLIDTLD 358 Query: 348 NEEGFPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADS 398 + F + E AL H +K++V RAY ++SDY+ Q P+M +W+D + + + Sbjct: 359 IDSNFSFETKERALDHHEKSKVVRAYTHKSDYINQLIPLMNFWSDYILSLKN 410 >UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8EC Length = 399 Score = 300 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 137/405 (33%), Positives = 208/405 (51%), Gaps = 16/405 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLI-KSSGSKLWQFRYYRPLTK-QRTKQ 58 MA + LTD I++ K + + L + K++GS W +++ P K QR K Sbjct: 1 MA--SVKLTDKIIRSLKSEQIKGDFV--ENLYIKANKAAGSFSWLYKFTNPHNKAQRQKI 56 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 G YP + ARK+ E L+ + I P EHQ +Q + +E + TF + + + Sbjct: 57 ILGRYPRTPIDFARKIAMEYNALVKQGIHPTEHQAQQKQQ-KEIEAMTFKEMTSLYREFR 115 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 SV DD +E IFP GD+ + +I + ++P++A G T+ ++C Sbjct: 116 ADSVKN--VDDAISRVEMYIFPKFGDLPLNKISLAEWHRTLKPMEA-GKNNTLLKICSTS 172 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 +++ YAQ G ID P + +F K + K+ P+I P +L + + + + + ST+ Sbjct: 173 KQILDYAQTCGYIDFNPLTTLRASFRKKKAKHNPTIEPKRLAEFIRDLFLSDVERSTKLS 232 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 +QLLT TRP E A+A+W EIDF WK+PA +MK + H + L+ ALA+LE ++ Sbjct: 233 IEFQLLTATRPNETAKAKWAEIDFKNRLWKLPADKMKTGKPHIITLNSQALALLENIRRF 292 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRA---GLGGVLVSHGLRSIASTALNEEGFP-- 353 +G RE+IF S ++QT N A+K VL SHGLRS+ ST LN P Sbjct: 293 TGDREYIFSSSRSKTGHQSTQTANNAIKSIQGGKYHSVLTSHGLRSVFSTYLNGLHDPMI 352 Query: 354 -PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 I+A LAHV N R YN S + EQ+R +MQ W D V+ Sbjct: 353 HNVHIDACLAHVVGNGTSRTYNHSAHEEQKRYIMQKWGDYVEQCK 397 >UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=B5JZM6_9RHOB Length = 411 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 119/407 (29%), Positives = 197/407 (48%), Gaps = 22/407 (5%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K L+ ++ A DG GL L + +SG+K W R + +RT+ G+ Sbjct: 23 KALSAAFVRTATTPGK---YNDGHGLFLKVVTSGAKRWVQRIV--VRGKRTEIGLGSASL 77 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT-E 124 VSL++AR+ E++ L DP + ++ TF + + + + + + Sbjct: 78 VSLAEARETALENRKLARAGGDPLQAKRTSEALL------TFEEASRKVHKIHEPTWRNK 131 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A +LE FP + ++ ++E+ ++ +QP+ ET +R+ QRI VM + Sbjct: 132 KHAAQFLSTLETYTFPRMSNLKVSEVTTADVLAVLQPIWLE-KPETAKRVRQRIGTVMKW 190 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQ--KKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 A G P+ I +A K + K+ S+ D++ + +R++ +T+ Sbjct: 191 AVANGWRQDNPAGAISQALPKQKQPVKHRKSLPYDEVSGCLVAVRSSRAFNATKLALELT 250 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT R E A W EID +EW IPA RMK +++H +PLS A+ +LE K L G Sbjct: 251 VLTACRSGEVRLAEWSEIDLAKAEWTIPAQRMKASKEHRIPLSGRAVEVLEAAKALDDGT 310 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAAL 361 +FPS P++ T++ +K GLG + HG R+ T E +V EAAL Sbjct: 311 GLVFPSTT--GNPLSDMTLSKLVK--GLGYDVDVHGFRTSFKTWCQERTTTAREVSEAAL 366 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 AH +N+ AY RSD E+RR +M+ W+ V A+ S VL ++K Sbjct: 367 AHSIQNKAEAAYARSDLFEKRRKLMEQWSCFV--AEPSSAVLVRIAK 411 >UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepID=B7UP04_ECO27 Length = 405 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 135/397 (34%), Positives = 191/397 (48%), Gaps = 18/397 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKS-SGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTDT+ + KP D GLTL S G W FRY P+T++R G YP V Sbjct: 4 LTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEV 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV-TED 125 S+++A + + LA DP E +K S++ TF A R Sbjct: 64 SIAEAARTARIMREQLAAGDDPLEIKKA---ESEKVVIPTFADAARRVHAELSPGWENPK 120 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + +LE FP +G ++ I A + + ++PV + ET R+ QRI+ VM + Sbjct: 121 HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLS-ETASRVKQRIHVVMQWG 179 Query: 186 QNTGLIDAVPSVNIGKAFEKPQK---KNMPSIRPDQLPQLMHT-MRTASISMSTRCLFMW 241 G A P + + + ++ P++ QLP + T + T TR L + Sbjct: 180 WAHGFCVANPVDVVDHLLPQKTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLM 239 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +LT TR EA RW EIDF+ W IPA RMK H VPLS A+ ILE ++ L Sbjct: 240 VILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAMHILENIRGL--H 297 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAG-----LGGVLVSHGLRSIASTALNEEGFPPDV 356 E +FPS K Q ++ + + L++ G V +HG RS +E+G+ D+ Sbjct: 298 DELVFPSPRKQ-QILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDL 356 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E ALAH KN+V AY+R+D LEQR PMMQ WAD V Sbjct: 357 AERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV 393 >UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9F3_9SPHN Length = 443 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 122/421 (28%), Positives = 207/421 (49%), Gaps = 36/421 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT EIK AKP+ +DY+L D GL L + S+G K W++RY + + + G YP + Sbjct: 3 LTIVEIKNAKPQASDYRLADSQGLFLHVTSAGGKFWRYRYR--IGPKEKTLTLGRYPEMG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR+ E++ L+++ DP +++ EA TF +AE W ++ + A Sbjct: 61 LVAAREAHHEARKLVSEGKDPALEKQKAKIARIEAAKITFRKLAEEWLADQEPIWSVSNA 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + ERD++P G++ I +I++ +++A++ ++ARG++ET +R+ I V A+ Sbjct: 121 KRVRHRFERDLYPLFGNLPICQIESAPILRALRKIEARGSIETAKRVRGYIKSVFRRAKG 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-----DQLPQLMHTMRTASISMSTRCLFMWQ 242 GL+D + I + + + S +P + + + ++ S++ + Sbjct: 181 EGLVDHAILLEIDEIKDALKPARRGSKQPALTEVPETLEFQKAVDRSTSSLTVKLASRLL 240 Query: 243 LLTITRPAEAAEARWDE---IDFNA-------SEWKIPAARMKMNRD--------HTVPL 284 LT+ R A W E ID++ W+IPA+RMK++ + H VPL Sbjct: 241 ALTLVRVGVLRTALWSEFEGIDWDNPDAIPNAPIWRIPASRMKLDVEDKGNPAFGHDVPL 300 Query: 285 SDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAG---LGGVLVSHGLRS 341 A+ +L ++PL+GG +FP+ +PM+ ++ KR G V+V HG RS Sbjct: 301 PHQAVEVLRALRPLTGGFALLFPNSKSWREPMSDAALSTMYKRMGGGRYKNVMVPHGWRS 360 Query: 342 IASTALN------EEGFPPDVIEAALAHVDKNE--VRRAYNRSDYLEQRRPMMQWWADLV 393 ST +N E VI+ LAHV +YNRS Y + R ++Q WADL+ Sbjct: 361 SFSTIMNERAAELERDGDRMVIDLVLAHVPPGVSASEWSYNRSRYRKPRGTLIQIWADLI 420 Query: 394 K 394 Sbjct: 421 T 421 >UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO Length = 436 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 117/433 (27%), Positives = 201/433 (46%), Gaps = 51/433 (11%) Query: 9 TDTEIKAAKPKDAD--YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 T ++ KP D D Y++ G GL LL++ G K W+ +Y K++ + G +P V Sbjct: 10 THKHVEHLKPSDRDEWYRVAGGTGLRLLVRKQGGKYWRLKYR--FNKKQKTLALGVFPNV 67 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS----V 122 +L A+ ++K +LA +DP + + S N+ A +W + + Sbjct: 68 TLKQAKDATIKAKAMLADGVDPGDTK------STNTNDNSLRFYAAKWLEYQSQATARVW 121 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 +ED+ +W+ LE I +GD IT+++ + + ++ V+A+G ET +R+ + Sbjct: 122 SEDHKARVWKRLENGILKKLGDKLITDVRKEDVRRLIENVEAKGHHETAKRIADDTQRLF 181 Query: 183 IYAQNTGLIDAVPSVNIGKAFE--KPQKKNMPSIRPDQLPQLMHTMRTAS--ISMSTRCL 238 Y + ++ + + + + + ++ LP M + + T Sbjct: 182 EYVVDQYSLEDDVDIRLLRPVKVISKPVVHREALDIKNLPFFMQDLANYTQTGRELTALA 241 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 +LT R E ARW+E D + W IPA RMKM R H VPLS AL +++ +K + Sbjct: 242 IELLILTFVRSGELRGARWEEFDLDNKVWSIPAERMKMKRPHEVPLSAKALDVIKRIKRI 301 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGL---------------------------- 330 +G E +FPS KP++PM+ T+ A+ + G Sbjct: 302 TGHYELLFPSETKPDEPMSDNTMRQAMFKMGYFPKAKDTKDGKIAKTYLKYQDNAHYPDG 361 Query: 331 --GGVLVSHGLRSIASTALNEEG--FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPM 385 V HG R++AS+ L+E F D IE LAHV++N+V+ AY ++++Y ++R M Sbjct: 362 RLKEKAVPHGFRTMASSTLHESDQKFRSDAIERQLAHVEQNKVKDAYSHKAEYWDERVEM 421 Query: 386 MQWWADLVKAADS 398 M+WW D V Sbjct: 422 MEWWGDFVNEQRE 434 >UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobacteria RepID=A9VZC1_METEP Length = 412 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 119/399 (29%), Positives = 188/399 (47%), Gaps = 19/399 (4%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K LT +++A K + DG+GL L+++ SGSK W R + +R G Sbjct: 20 KALTTVQVRALKV---PGRYADGNGLYLVVEPSGSKRWLLR--TIVQGRRRDIGLGGAGL 74 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V+L++AR+ + L DP +++ A TF AE+ K S Sbjct: 75 VTLAEAREKALAYRKLARDGGDPLAERRK-----ARATVPTFAEAAEQVHEEHKASWKNP 129 Query: 126 YADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 W +L P +G + +I+ +++A+ P+ ET RR+ QRI V+ + Sbjct: 130 KHAAQWITTLRTYANPHLGARRVDQIETPDVLRALSPIWLT-KGETARRVRQRIGTVLDW 188 Query: 185 AQNTGLID-AVPSVNIGKAFEKP--QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 A+ G P ++ K K + ++ ++ ++P + ++++ + R F + Sbjct: 189 AKAAGHRTGDNPVESVAKGLPKQGERDEHHAALPYAEVPAFVTRLQSSDHGEAARLAFEF 248 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +LT R +E A W EID + W +PAARMK R+H VPLS +L I+ K L+G Sbjct: 249 LILTAARTSEVLRAEWREIDEAEALWTVPAARMKAGREHRVPLSKRSLEIVRRAKLLAGD 308 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAA 360 FIFP R +PM++ AL+R L + +HG RS E P +V E A Sbjct: 309 SAFIFPGR-STGKPMSNMVFLMALRRMKL--TVTAHGFRSSFRDWAAEATSLPREVAEMA 365 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 LAH +N V AY R D L +RR MM+ W+ V + G Sbjct: 366 LAHTIENRVEAAYRRGDLLAKRREMMEQWSTFVASKPKG 404 >UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurellaceae RepID=A6VNS1_ACTSZ Length = 427 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 134/421 (31%), Positives = 217/421 (51%), Gaps = 24/421 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA K L+ +I AAKPKD Y L DG GL L IK +G+K W F Y +P K+RT ++ Sbjct: 1 MALLVKHLSAAQINAAKPKDKIYYLSDGLGLRLAIKPNGTKTWLFNYTKPYIKKRTDKTI 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-- 118 G YP+VSL+DAR E + LLAK+IDP +++ E+ + + +NTF VA W + Sbjct: 61 GQYPSVSLADARAKAHEFRELLAKNIDPHQNEIEKEKQERLPMSNTFSHVANEWLVYREK 120 Query: 119 ----KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 + +E D R + D +GD S E+K + + + RG +++ Sbjct: 121 IGMERKDYSEKTKTDTIRRV-NDAIEILGDTSFKELKLQHGLALLDAHRTRGQYTEMKKR 179 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISM 233 + + YA+ G D +G+ P + K+ +I +LP+ + +R A+I Sbjct: 180 LFVLKSIAEYAERFGYWDRNEWRYLGEDLPSPDKNKHFAAIHYKELPEFLFELRKANIHY 239 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNAS-----EWKIPAAR-MKMNRDHTVPLSDG 287 S+ +W LL +TR +E A++ +I N + + + K RDH +PLS Sbjct: 240 SSLLAILWGLLNVTRASETVGAKFSDISENENLPGELVLTVQVNKGGKGARDHLIPLSRQ 299 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQ--PMNSQTVNAALKRAG---LGGVLVSHGLRSI 342 A +L ++ S +++FP+ K + +N QT N +K G G++ +HG+R++ Sbjct: 300 AGKLLTFIRKNST-SDYLFPAAYKRGRLVHINPQTPNDVIKSMGAGKYKGIMTNHGMRTL 358 Query: 343 ASTALN----EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 S+ N E G P++IE L+H++ ++VR AYNR++YL R +Q WAD V+ Sbjct: 359 FSSYCNDNRLELGLDPEIIEICLSHLNGDKVRNAYNRAEYLPYRLKTLQAWADYVELCAK 418 Query: 399 G 399 G Sbjct: 419 G 419 >UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria RepID=D1D4Y4_NEIGO Length = 406 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 134/413 (32%), Positives = 212/413 (51%), Gaps = 28/413 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ PL+ ++K AKP+D Y+L DG GL L + +G + W+ + + ++ S Sbjct: 9 MAKIITPLSANQVKNAKPRDKLYKLSDGGGLALWVYPTGRRSWKLSFMQ--DGRQQTISL 66 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP SL++AR+ R E + A E V N + F VA W+ Sbjct: 67 GRYPDFSLAEAREWREEVRRKRAHG--------ENVVNKKVRADFAFEKVARDWFVRWSK 118 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +E YA + R+ ER +FPAIG++ I +++ +V ++ ++ARG ++T+R+ + Sbjct: 119 GRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKM 178 Query: 181 VMIYAQNTGLIDAVPSVNIG-KAFEKPQKKNMPSIRPDQLPQLMHTMRTA---------- 229 V +A +G++D P IG FE+ + KNM ++ P +LP+L+ + Sbjct: 179 VFAFAVGSGMMDINPVAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRV 238 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 I TR W LLT+TR EAA W E+D W+IPA R K R H VPLS Sbjct: 239 HIHPVTRFCIYWLLLTMTRIREAALMEWSELDGE--VWRIPAERKKERRGHDVPLSRAMR 296 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L+ + L+ F+F S + +N ++ + A++R+GL +HGLRS+A T L E Sbjct: 297 WVLDQARGLNVNGRFVFES-VNFQGHINKESPHVAMRRSGLD--TTAHGLRSLARTYLRE 353 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA-DLVKAADSGS 400 DV E LAH + AYNRS+ E+R+ + W D+++ AD+G Sbjct: 354 VLKVYNDVAEKLLAHSLGTRTQTAYNRSELWEERKDAPERWGNDVLRLADNGK 406 >UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EVM1_ECOLX Length = 396 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 117/401 (29%), Positives = 187/401 (46%), Gaps = 17/401 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP--A 65 LTDT ++ KPK+ Y++ D DGL + + +G+ +++ Y + ++ +FG Y Sbjct: 2 LTDTRLRHLKPKEKLYKVNDRDGLYVAVTPAGTISFRYNY--SINGRQETVTFGRYGVGG 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 ++L++AR+ E+K ++A P + ++A+T F AE+W + + E Sbjct: 60 ITLAEARERLNEAKKMVASGRSPAREKARDKARIKDAET--FGAWAEKWLRGYQ--MAES 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 D +R++ +TEI L + RGA T + + +V +A Sbjct: 116 TRDMRRSVYQRELKSKFAQQKLTEITHEDLRALTDNIVERGAPATAVHAREIVLQVYRWA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 G PS + A + ++ P ++ + M + S R LLT Sbjct: 176 IERGQKVENPSDLVRPASIAKFEPRDRALTPVEIGLMYRYMERVGTTPSIRAAVKLLLLT 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 + R +E A W EI+F+ + W IP RMK H V LS A+ I+ +K +G +FI Sbjct: 236 MVRKSELTNATWKEINFSEALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFAGSSDFI 295 Query: 306 FPSRIKPNQPMNSQTVNAAL--------KRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 PSR + PM+S T+N L K L H LR AST L+E G+ D I Sbjct: 296 LPSRYDSDAPMSSATLNRVLTLTYRLAQKEGDLLPKFGPHDLRRTASTLLHEAGYNTDWI 355 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 E LAH K VR YN+++Y EQR M+Q WA+++ S Sbjct: 356 EKCLAHEQK-GVRAVYNKAEYREQRAEMLQDWANMIDEWTS 395 >UniRef50_C9M6R5 Site-specific recombinase, phage integrase family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R5_9BACT Length = 393 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 131/398 (32%), Positives = 185/398 (46%), Gaps = 21/398 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IK K + Y + DG+GL LL+ +G K+W RY+ + K+ + + G YP + Sbjct: 2 LTDTAIKRLKLGETRYLILDGNGLYLLVCPNGRKVWTVRYW--IDKKLHQLTIGDYPMMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR R E K + + TF A W+ +K A Sbjct: 60 LAEARAERDEIK-----------NDARYEKKVAAPMGLTFGEFAREWYEKRKRPKLSKSA 108 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++ R + P + +TEI +V + + + ETVRR ++ VM YA Sbjct: 109 QALYDLRFRYLDPLMA-RPLTEITREEIVDTLHKLSEQHPAETVRRTGGIVSMVMGYALA 167 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T I PS +G K MP+ ++ LM + + S+ R T Sbjct: 168 TRKIPYDPSSQLGLELPIHVSKPMPAATHASEIGVLMRALESID-SLVLRSAIQLIAYTF 226 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R EA ARWDEID W +PA K DH VPLS A+ IL+ ++ GG+ IF Sbjct: 227 VRSGEACLARWDEIDLKEGLWSVPAEHTKTKLDHLVPLSRQAVMILDTLRRRFGGKGHIF 286 Query: 307 PSRIKPNQPMNSQTVNAALKRAGL-----GGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 PSR + + S +K L V HG R+ AST LNE + DVIEA L Sbjct: 287 PSRNRGKLVIPSTLSREMVKLQSLPLEARPIPTVVHGFRATASTVLNEHQWNRDVIEAQL 346 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 H ++N+ RRAYNR++YL R MMQW+AD + A G Sbjct: 347 GHFERNKSRRAYNRAEYLPIRISMMQWYADYLDALRDG 384 >UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3P2_BURTA Length = 409 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 114/400 (28%), Positives = 184/400 (46%), Gaps = 19/400 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D + ++AKP++ Y+L DG GL LL+K +G K WQFRY +P + G YP ++ Sbjct: 6 LRDLQCRSAKPRERVYRLSDGGGLALLVKPNGLKYWQFRYMKP-DGREGLIQIGPYPRIT 64 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQV--RNSQEAKTNTFLLVAERWWNVKKTSVTED 125 L AR R E +V + DP +K++ R A+ F A + + Sbjct: 65 LEAARAARNEHRVAVQGGDDPATLRKQEKARRKIDAARALNFKQCATAFIEARSAEWVNP 124 Query: 126 YADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 W +L +P IG + +I + K ++P+ ET R+ RI V+ + Sbjct: 125 KHTQQWTNTLSTYAYPIIGALRPADIDTDLVRKVLEPIWLT-KNETASRVRGRIESVLDW 183 Query: 185 AQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 A+ GL D ++ + K+ ++ ++ + +R + + Sbjct: 184 AKVRGLRDGENPARWSGHLDQLLAAPGKVQKPKHHAALPFTEIGAFVAELRGMVGTAA-- 241 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + +LT R E AR DE D +A W +PA RMK R H VPLS AL +L+ + Sbjct: 242 RALEFTILTAMRTGEVIGARHDEFDADAQLWTVPAERMKAKRAHRVPLSSSALELLKTL- 300 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPD 355 P S +F ++ +P+++ + L+R G L HG RS E F + Sbjct: 301 PTSADSPVVFEG-MRARRPLSNMAMLQVLERMK-RGALTVHGFRSTFRDWAAECTPFSNE 358 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 V+E ALAH +++ AY R D ++RR +MQ WAD ++ Sbjct: 359 VVEMALAHAIRDKTEAAYRRGDLFDKRRTLMQAWADHIEN 398 >UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresistens RepID=C6RLT7_ACIRA Length = 405 Score = 290 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 114/404 (28%), Positives = 188/404 (46%), Gaps = 21/404 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D +IK K KD Y++ D GL L ++++GSK W++RY + + G YP +S Sbjct: 2 LNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPK--MLTIGPYPEIS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS AR E + +LAK++DP QK+ + ++ +A +TF ++ + K + ++++ Sbjct: 60 LSYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWY 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQ------ARGALET-VRRLCQRINE 180 ++ R ++DI P IG+ I E+ ++ + + RG E + Q E Sbjct: 120 ENRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICAE 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA T I P++ + +P + + ++ + + T+ Sbjct: 180 VMQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQNALR 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIP----------AARMKMNRDHTVPLSDGALA 290 L ++ R E A+ ++ + IP MK NR H VPLS L Sbjct: 240 TALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLSTQMLE 299 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 I++ L ++FP + T+N AL GL G + H R+ AST LNE+ Sbjct: 300 IIKEQLQLYPDSIYLFPGD-DGISMLGKNTLNEALVNMGL-GHITMHDFRATASTYLNEQ 357 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 + D IE LAHVD + R +YN + +L+ RR MMQ AD + Sbjct: 358 NYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMMQHLADTID 401 >UniRef50_D1Y3S1 Site-specific recombinase, phage integrase family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S1_9BACT Length = 433 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 134/416 (32%), Positives = 209/416 (50%), Gaps = 36/416 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L T I+ + KDA Y L DG GL L + +G K+W +RY R ++ K + G YPA+ Sbjct: 3 LNITAIERSTGKDAPYLLNDGGGLYLKVCPNGRKVWLYRY-RDEGERERKVTLGEYPALD 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV-KKTSVTEDY 126 ++ AR+ + ++ + + P Q+ TF VA RW+ KK + Y Sbjct: 62 MAAARERKEATRARILRGEAP-----------QDTALLTFEQVARRWYEKQKKRGLAPRY 110 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + I + LE + P +G + +I+ LV V+ V RG +E+ R+ ++++ YA+ Sbjct: 111 LETIRQRLECYLIPPLGARPLEQIQRAELVAVVEGVAKRGIVESSHRVGVILSQIYQYAE 170 Query: 187 NTGLID---AVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQ 242 + G++ A+ + ++ + K + ++ ++ P+ + Q+M +R +RC + Sbjct: 171 DAGILPGGGALAAASLSRVLPKTKTEHFATVSKPEDVRQVMECIRDYRGFAVSRC-LEFI 229 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LT R EA ARW EID A W IPA MK H VPLS ALA+LE MKPLS Sbjct: 230 ALTFVRSGEARRARWREIDLEARLWTIPAEHMKRRIAHKVPLSRQALALLEEMKPLSCSG 289 Query: 303 E--FIF----PSRIKPNQPMNSQTVNA----ALKR------AGLG--GVLVSHGLRSIAS 344 IF R + + ++ ALKR AGL + HGLRS+AS Sbjct: 290 PESLIFVSGLTGRSSSSGILTDMSLLRPFREALKRNPERAAAGLKPFPKMTVHGLRSMAS 349 Query: 345 TALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 T LNEE ++IE L+H+D + +R YN S+ L+ RR +MQ+WAD + + Sbjct: 350 TILNEERQGGELIEIQLSHLDADRIRLIYNNSELLDDRRALMQFWADWLDNCTRNA 405 >UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X2_ACICJ Length = 410 Score = 288 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 122/421 (28%), Positives = 187/421 (44%), Gaps = 23/421 (5%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + K L I A + + L+DG GL L +++ GSK W FRY ++ S Sbjct: 1 MPKTVSKRLNALAITNA---NREGNLHDGGGLYLRVRADGSKSWAFRYTMA--GRKHWMS 55 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G VSLS+AR+ + + L+ DP ++E+ + E TF VA + + Sbjct: 56 LGPLRDVSLSEAREQARQLRNLVRDGFDPLAQRRERQHLAAEQTARTFDAVAAAYVEAHR 115 Query: 120 TSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + W +L P IG ++EI + + + P+ A ET RL R+ Sbjct: 116 AEWSNPKHAQQWENTLATYASPIIGKRPVSEISLLDVRRVLDPIWAE-KPETASRLRGRV 174 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTAS 230 V+ YA G ++ K+ ++ +P M +R Sbjct: 175 EAVLAYATVHGWRSGDNPARWPGFLDQIYAPKAKVRAVKHHAALDYHDMPAFMAELRERE 234 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + + +LT TR EA ARWDEIDF+A+ W IPA RMKM ++H VPL+ A+ Sbjct: 235 --AVSARCLEFAILTATRSGEARGARWDEIDFDAAVWVIPAPRMKMKKEHRVPLAPRAVE 292 Query: 291 ILEMMKPLSGGRE-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L M S R+ IFP P +PM + A+ A L +HG+RS E Sbjct: 293 LLREMAGRSPRRDGLIFPG-GAPGKPMTDVALAKAV--AVLRPGFTAHGMRSSFRDWAAE 349 Query: 350 EG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 FP ++ E ALAH++K+ AY R D L +RR +M+ WA+ S + + + Sbjct: 350 MTSFPREIAEVALAHINKDRTEAAYQRGDLLAKRRQLMEAWANYCAGLVEESEKVVAMRR 409 Query: 409 I 409 Sbjct: 410 A 410 >UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUK8_9GAMM Length = 446 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 105/434 (24%), Positives = 182/434 (41%), Gaps = 31/434 (7%) Query: 10 DTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLS 69 D IKA KD Y + GL L I+ +G ++ RY P T +R + G+YPA SL+ Sbjct: 13 DKFIKAGVSKDTSYPIAGFKGLELRIRPNGKAEFRHRYTHPYTGKRPYMTLGSYPAFSLA 72 Query: 70 DARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADD 129 A++ ++ LLA+ IDP H++++ A NTF VA+ W N + + A Sbjct: 73 QAKQAYNDNMALLAQTIDPLTHKEQENAKQAYALDNTFEAVAKDWLNEQTNNPDYVRAKQ 132 Query: 130 IWRSLERDIFP---AIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + E + P G + I I +++ ++ +Q + ++ R+ + +A Sbjct: 133 TIVNWEYQLKPLIATFGKMPIGSITTPQVLRLLREIQ-KTHIQKGNRVKAIAGRIFAHAV 191 Query: 187 NTGLIDAVPSVNI--GKAFEKPQKKNMPS-IRPDQLPQLMHTMRTA-SISMSTRCLFMWQ 242 GLI+ P + + +A + + + P+ I P + +L+ + + + + + Sbjct: 192 INGLIEHNPVLQLAGARALKPTRSDHRPALITPAEFAELLKEIDNITNAKLFQKEILQLL 251 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDH----TVPLSDGALAILEMMKPL 298 LT R + +W +I A W + K D VPL+ +AILE M + Sbjct: 252 ALTFVRIGDVCAMKWADIHLEAKMWVFEPQKGKNRHDMVDCLVVPLAPQTIAILERMHEI 311 Query: 299 SGGREFIF-PSRIKPNQPMNSQTVNAALKR--------------AGLGGVLVSHGLRSIA 343 +GG E++F + K Q + Q +N L G V HG R+ A Sbjct: 312 TGGMEYVFYTGKRKKGQHADPQQINRILNDPSMNKAGMGKNYCGKGYLNVHSPHGFRASA 371 Query: 344 STALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS-- 400 T L E G+ + E + YNR + + +R MM WA+ + SG Sbjct: 372 KTLLMERLGYNHLITEIQSGRSMPDVYGNTYNRMEAINERIKMMNDWANYLDQLKSGKMD 431 Query: 401 -IVLTHLSKIRLVG 413 I+ + + Sbjct: 432 NILFVDFKNAKAIN 445 >UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZM1_SULD5 Length = 416 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 114/413 (27%), Positives = 184/413 (44%), Gaps = 19/413 (4%) Query: 1 MARKTKPL-TDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + + L TD EIK KP+D Y D +GL +LI G K+W+F Y P ++ K + Sbjct: 1 MPKISTSLLTDKEIKNFKPEDKPYIKSDINGLRILIHPDGRKIWEFVYTSPTLYKKRKST 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG YP +L +AR R L+ + IDP + Q+E+ + K + F V W+ ++ Sbjct: 61 FGTYPKTTLKEARDKRETYLNLIKQGIDPIDAQREEKAEVKLQKESDFSNVVNLWFQSQE 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + + + + P + SI EIK LV+ + ++A ET +RL + Sbjct: 121 SHIVHSTYKKKRALFDTTVIPVLKHKSIAEIKHDELVQII-KIKAIQTPETAKRLLGYFH 179 Query: 180 EVMIYAQNTGLIDAV--PSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTR 236 ++ +A G D P+++ K KK+ I P L QL++++ T +ST+ Sbjct: 180 DLWQFACTHGYCDFNIVPNIHAKSVLPKIVKKHYACITDPSILKQLVNSIYTYGGHISTK 239 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM--NRDHTVPLSDGALAILEM 294 + L R +W +DF IP MK D +PLSD A+AIL+ Sbjct: 240 NALKFVLHVPLRAGNLVSLKWAYVDFEKHLITIPRKEMKAKSGDDFILPLSDEAIAILQE 299 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAG-----LGGVLVSHGLRSIAS----T 345 + +EF+F ++ T + AL+R G LG H R+ T Sbjct: 300 QYLYTSHKEFVF--VADNGLHIDEVTPSRALQRMGFNNETLGNKQRLHSFRATFRSLVDT 357 Query: 346 ALNEEGFPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAAD 397 E + E L H+ + V RAY ++ Y E+ R ++ WW+ + A Sbjct: 358 HQMEHRSSYEAKEKVLDHIVGSGVERAYTQKAIYTEEMRLLLTWWSGYILAMM 410 >UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=Q8DF52_VIBVU Length = 452 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 154/440 (35%), Positives = 235/440 (53%), Gaps = 51/440 (11%) Query: 1 MARKTKPLT-DTEIKAAKPKDADYQLYDGDGLTLLIK----SSGSKLWQFRYYRPLTKQR 55 MAR+ T D + + + + DGD L L ++ K WQF Y+ PLTK+R Sbjct: 2 MARRNPDKTYDKA--SLQDGKKEQLISDGDNLYLRLRLGKNKKTKKSWQFNYHHPLTKKR 59 Query: 56 TKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW 115 K + G YPA++L DARK LL K+IDPQE+++ N+ + F VAE+W+ Sbjct: 60 IKLTIGNYPALTLKDARKKAENYLELLEKNIDPQEYERTGGINAIDPDKRLFKDVAEKWF 119 Query: 116 NVK-----KTSVTED-----------------------------YADDIWRSLERDIFPA 141 K K E Y+ DI L+ I PA Sbjct: 120 EEKILAEDKKKRQEKIDDANKRAKDEGREKASEQELEAVLRDIRYSKDIRGRLDNHILPA 179 Query: 142 IGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGK 201 +G+I IT+++ + +A+QP A+G + ++CQ + VM YA+ G + + P ++ + Sbjct: 180 LGNIPITKMETYLAQEALQPSYAKGIN--MDKICQISSRVMGYAKKLGYMKSNPLSDLSE 237 Query: 202 AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEID 261 F +K+ PSI+P+ L +LM M +I+ TR F Q+ T+ R +E A+ RWDE+D Sbjct: 238 VFVNKRKQKQPSIKPEGLSELMKAMGERNITKVTRAGFEMQMHTLARASEIAKMRWDEVD 297 Query: 262 FNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQP-MNSQT 320 F + KIP+ RMK +H +PL+ +LE +KP S E++FP+ + ++P MN Q+ Sbjct: 298 FENNLIKIPSYRMKRLNEHFIPLTKYTRGLLEYLKPFSSHLEYVFPADPRSSRPHMNQQS 357 Query: 321 VNAALKRAGLGGVLVSHGLRSIASTALNEE-------GFPPDVIEAALAHVDKNEVRRAY 373 +NA LKRAG G LVSHG R + ST LN+ F DVIEA LAH D +++R Y Sbjct: 358 INANLKRAGFKGELVSHGFRHMGSTFLNDSKKYGANEKFDADVIEACLAHCDNDKIREIY 417 Query: 374 NRSDYLEQRRPMMQWWADLV 393 N ++Y+E RR ++++W D + Sbjct: 418 NSAEYIEMRREILEFWGDYI 437 >UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FSX1_PSYA2 Length = 444 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 101/403 (25%), Positives = 174/403 (43%), Gaps = 16/403 (3%) Query: 9 TDTEIKAAKPK----DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 TD++IK A + D Y + GL L I+ + + ++ R+ P+T +R + GAYP Sbjct: 44 TDSQIKQAIKEHDSGDEVYTIQGYKGLNLYIRDNKTTTFRHRFTSPVTGKRKNFTLGAYP 103 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +L AR + + LLA IDP H ++ + T F +A+ W + S Sbjct: 104 VFTLEQARDMYRNNLSLLAGGIDPVFHHQDAHNKKRAMPT--FSELADEWLQSQIASKQF 161 Query: 125 DYAD-DIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 ++ + R+ IG + I IK +++A++ ++ + T +R+ + Sbjct: 162 EHRTIEQKRTHIAYAAAYIGRMPIDHIKTPDVLRAIKDIEKKTIP-TAKRVRGVCQRIFA 220 Query: 184 YAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSI-RPDQLPQLMHTMRT-ASISMSTRCLFM 240 A G ID P++ + KP+ ++ +I P +L+ + + + + Sbjct: 221 LAIGQGYIDNNPAIAVADLMLPKPKTEHHHAIIEPIAFGKLLSDIDSVTDFYGHAQNILK 280 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHT----VPLSDGALAILEMMK 296 Q L R + RWD IDF+A W + D VPL A+ L + Sbjct: 281 LQALLFQRNGDMCSMRWDAIDFDAKTWTFSPQKTGNRGDMVASLVVPLPTQAIEHLRALH 340 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 L+ ++F + + + + Q +N L R G V HG R+ A T + E G Sbjct: 341 ALTSKTPYVFYNSRRKEKFEHQQQLNKFLWRLGYKDVHTPHGFRASARTLMVEQLGISET 400 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + E L H ++ RAYNR +++RR MMQ WAD + Sbjct: 401 LAELQLGHNVRDANGRAYNRVTMIDKRRDMMQRWADYLDQLRR 443 >UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QAC1_PSYCK Length = 448 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 110/414 (26%), Positives = 195/414 (47%), Gaps = 17/414 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M RK +D I + KP+D Y + + L L+++ + +K W +RYY P +++ Sbjct: 1 MERKAIS-SDRSISSHKPEDKKYFVAVKNHPKLFLMVRPTETKSWMYRYYPPSNPKQSII 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 S G YP++S + A ++ E + LL+K IDP+ H+++ ++ N+F A +++ Sbjct: 60 SIGIYPSISYARACEVWREYEDLLSKGIDPKIHREDIKKSFISKTKNSFNHFAWEYFDTL 119 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARG------ALETVR 172 + S + LE I IG+ I+EI + +++ + +QA+ + Sbjct: 120 EQSQKGNTLIRKKGRLE-LICSYIGNEPISEIGSPRMLEVLLDIQAKSLNKDDKPTDKAE 178 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASI 231 R ++V +YA G + P+ I K + P++ P L +L+ + T Sbjct: 179 RCAGIASDVFVYANARGFCSSNPAALIKSQLAKSSYGHRPAVTKPKDLAKLLRAIETIEG 238 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPA----ARMKMNRDHTVPLSDG 287 +T L R + W ++D A W++ ++ M +D VPL Sbjct: 239 DPNTINSLRLLALLFVRNGDLRRMCWIDLDLEAGRWRLKPLKGQGKVNMVKDMVVPLPRQ 298 Query: 288 ALAILEMMKPLSGGREFIFPSRI-KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 A+AIL + ++G +++F S+ K +Q ++ T N LK G + +HG R+ A T Sbjct: 299 AVAILREQQKINGHTKYVFFSQTAKKHQIISDATANKRLKDLGYKDIHCAHGFRATAKTI 358 Query: 347 LNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 L E +P ++E AL H K+ AY R +Y++ R MMQ WAD + A G Sbjct: 359 LQEQLKYPLVLVEMALGHTTKDPNGTAYGRFEYIDDRSDMMQKWADYLDALREG 412 >UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family n=4 Tax=Rhodobacterales RepID=Q5LS43_SILPO Length = 406 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 187/397 (47%), Gaps = 19/397 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 R K L+ ++ + DG GL L + +G+K W R + +RT+ G+ Sbjct: 16 RAEKALSAAFVRTVT---KPGKYTDGHGLFLKVDDTGAKRWVQRIV--IRGKRTEIGMGS 70 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 VSL++A + +++ L DP + ++ TF A + + + + Sbjct: 71 ASLVSLAEASETALQNRKLARAGGDPLQAKRTAQALL------TFEEAARKVHKIHEPTW 124 Query: 123 T-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 + +A +LE FP IG + ++E+ ++ +QP+ ET RR+ QRI V Sbjct: 125 RNKKHAAQFISTLETYTFPRIGKLKVSEVATADVLAVLQPIWLE-KPETARRVRQRIGTV 183 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKP--QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 M +A G P+ I +A K +++ ++ D++P+ + T++ + T+ Sbjct: 184 MKWAIANGWRTDNPAEAISQALPKQIDTQQHRKALPYDKVPEFLETLKASDAGDFTKLAL 243 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT +R +E +A W E D W PA RMK ++H VPLS AL IL + L Sbjct: 244 ELVVLTASRSSEVRKAEWSEFDLEQGIWTRPAERMKSKKEHRVPLSPRALEILIEARELC 303 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIE 358 G +FP K +P++ T+ K G + HG R+ T E P DV E Sbjct: 304 TGEGLVFPG-TKIGKPLSDMTLLKLTKALGYD--VDVHGFRTSFKTWAQERTNTPRDVSE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 AALAHV K++ AY RSD+ E+RR +M+ WA + + Sbjct: 361 AALAHVLKDKAEAAYARSDFFEKRRKLMERWASYISS 397 >UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q013_9GAMM Length = 455 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 116/426 (27%), Positives = 198/426 (46%), Gaps = 19/426 (4%) Query: 4 KTKPLT-DTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 K KP+T D I + K + +Y + L L+++ + +K W FRY P T + + SF Sbjct: 3 KRKPITSDRSISSHKAEAKEYLVPVKGRPKLYLMVRPNETKSWLFRYTSPNTGKSQRISF 62 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP+++L+ A + E + LL+K+IDP++++K + E TF A+ +++ KT Sbjct: 63 GIYPSITLARAHDIWQEYQDLLSKNIDPRDNRKAVKQALLENDDRTFGRFADEYFDTLKT 122 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAV-----QPVQARGAL-ETVRRL 174 + + L + + + + I EI ++ + Q V+A G E R Sbjct: 123 ILKPNTLQRKLNCL-KLLKDSFAETPIDEITPPQMLSMLIDVQNQFVKADGKPTEKAERC 181 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTA--SI 231 +++ YA G P+ + KP + P+ I+PD+ +L+ + + + Sbjct: 182 ASIASDIFKYASARGFCSTDPASMVKSQLIKPVYGHRPAIIQPDKFAKLLQDIDSLKDKV 241 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPA----ARMKMNRDHTVPLSDG 287 +T + R + RW ++DFN ++W+ + M RD VPL Sbjct: 242 DSNTNSSLRLLPMLFVRNGDLRRMRWADLDFNEAKWRFQPLKGEGKEHMVRDMVVPLPRQ 301 Query: 288 ALAILEMMKPLSGGREFIFPSRI-KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 A+ IL+ ++G EF+F S K N ++ T N LK G V HG R+ A T Sbjct: 302 AIEILQHQYKINGHSEFVFYSPSAKKNGIISDNTANKHLKELGYQNVHCVHGFRASAKTM 361 Query: 347 LNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 L E +P ++E L H+ K++ AY R ++LE R MMQ WAD + A + V Sbjct: 362 LQEQLKYPAVIVEMGLGHITKDQNGTAYGRFEFLEDRAEMMQTWADYLDALRNDEDVSRF 421 Query: 406 LSKIRL 411 ++ L Sbjct: 422 KNRTSL 427 >UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=C7JAN4_ACEP3 Length = 404 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 195/404 (48%), Gaps = 22/404 (5%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M+R + LT ++ A K L DG GL L + +K W FR+ P++ R + Sbjct: 1 MSRVSPHQLTARQVSALKGG----SLCDGGGLWL-VAQGAAKSWFFRFTSPISNTRREMG 55 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G+ +SL++ R+ E++ L+A +DP + +++ ++ TF +A+R+ Sbjct: 56 LGSVHDLSLAEVRRKATEARHLVAAGLDPIDERRKLKAQRKKESGLTFSDIAKRYVKEMA 115 Query: 120 TSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + +W SLER +FPA+G ++EI+ ++ ++P+ + ET R+ RI Sbjct: 116 PGWRNARSSTVWTSSLERHVFPAMGGKLVSEIETEDVLAVLRPIW-KTTTETADRVRGRI 174 Query: 179 NEVMIYAQNTGLIDA-VPSVNIGK---AFEKP----QKKNMPSIRPDQLPQLMHTMRTAS 230 ++ +A+ G D P+ G KP + +++P++ + ++M + A Sbjct: 175 ERILDFARTHGWRDGENPARWRGHLANILPKPSAVAKARHLPAVNRKDIGKVMAKLAQAE 234 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + + LT R E +A W EID W IPA +MK ++H VPLS GA+A Sbjct: 235 G--ISPKAVRFACLTAARSGEVRQAVWSEIDLVTKIWTIPAHKMKAGKEHRVPLSAGAIA 292 Query: 291 ILEMMKPLSGGR--EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 +L+ + P R + +FP K +P++ ++ AL A + HGLRS Sbjct: 293 VLQEVLPFRDKRAGDLVFPG-GKRGRPLSDVVLSKALHSAAGTKDVTVHGLRSTFRDWAA 351 Query: 349 -EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 E +P +V E ALAH ++V AY R D +RR MM W D Sbjct: 352 EETDYPGEVAEMALAHTISDKVEAAYRRGDLFNKRREMMTAWND 395 >UniRef50_B5J5X2 Site-specific recombinase, phage integrase family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J5X2_9RHOB Length = 383 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 113/375 (30%), Positives = 182/375 (48%), Gaps = 10/375 (2%) Query: 31 LTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQ- 89 + L + SG K+++ Y L + + G YPA SL+DAR + ++ L DP+ Sbjct: 1 MFLEVLPSGRKVFRLAYR--LAGNQRTKLIGDYPATSLADARLKASAFRLDLNS-SDPEI 57 Query: 90 ---EHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDIS 146 + Q +++ +T T+ VA+ + +++ S A+G+ Sbjct: 58 VEVATRPRQTVTTKKRQTTTWKEVADGYLMMRQQSNPAPKTLRKLNYQIGVTVDALGNPR 117 Query: 147 ITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKP 206 + EI A ++ V P+ + G +ET + R +++ YA GL+ P+ A K Sbjct: 118 VDEITAQDILDVVNPIASSGRVETAHEIRARFSQIFRYAGARGLVTHDPAAFTIDAMIKR 177 Query: 207 QKKNMPSIR-PDQLPQLMHTMRTAS-ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNA 264 ++ I P + +L+H + + + M R E RWDEID+++ Sbjct: 178 RRGEFAGITDPAAVGKLLHAIESYREANPIVGAALMLSAYLFPRNTELRGMRWDEIDWDS 237 Query: 265 SEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAA 324 W++P RMKMNRDH VPL A+ +L ++ G E + PS P + ++ T NAA Sbjct: 238 LRWEVPGQRMKMNRDHIVPLPSQAIDLLRFLQKYDFGSELVLPSPRDPKRMVSDMTFNAA 297 Query: 325 LKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRR 383 L+R G V HG R+ AST LNE G+ D IE LAHV N+VR +YN++ YL+ R Sbjct: 298 LRRMGFKSDRHVHHGFRTTASTNLNEMGWNYDWIERQLAHVPANKVRSSYNKAQYLDGRT 357 Query: 384 PMMQWWADLVKAADS 398 MM+ +AD + A Sbjct: 358 EMMRAYADWLDARRQ 372 >UniRef50_C8PFJ4 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PFJ4_9PROT Length = 383 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 191/405 (47%), Gaps = 31/405 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + + PLT T++K KPKD Y + DG L + I SG+K + + Y + + + + Sbjct: 1 MPKLSVPLTATQLKNLKPKDKPYFVGDGSNLLIKIMPSGAKFFIYEYKQ--GAKYKRVTI 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +SL++AR+ ++E K + + + TF V E W K + Sbjct: 59 GRAGEMSLAEARQRKSELKTRV-----------------KTSDKITFREVFEEWIKTK-S 100 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 ++ I R E + PA+G + I +I ++ A+ P+ + ET +++ +N Sbjct: 101 KISPKQLFWINRRFESLLLPALGSMQIADIGRKDIIGALSPLLSDEKQETAKKVLGALNG 160 Query: 181 VMIYAQNTGLIDAVPSVNIGKA--FEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRC 237 +A +D +I KA + Q ++ + + ++ L+ ++ + + Sbjct: 161 FYKFALLHEYVDHNIIADIDKATLIGRRQIRHFAYFKDEAEIRNLIKAVKGYFGNERIKV 220 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 ++ L T R A A WDEI WKIPA++MK +DH V LS +L + Sbjct: 221 CALFMLYTAVRGENARFATWDEI--KGDMWKIPASKMKNGKDHEVFLSSSVRRMLSDYRA 278 Query: 298 LSG-GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVL-VSHGLRSIASTALN----EEG 351 S EFIFPS +P++ TV + L+ G + HG R+ ST + E G Sbjct: 279 SSPLQSEFIFPSIKSNVRPISDNTVRSMLRNLGFSNEMITPHGFRATFSTICHEKQDEHG 338 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 DVIE LAHV+KN+V+ AYN + L+QR +MQWW+D + Sbjct: 339 QNSDVIELCLAHVEKNKVKDAYNHAKNLKQRAALMQWWSDFLDGL 383 >UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F7C9 Length = 374 Score = 285 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 112/397 (28%), Positives = 190/397 (47%), Gaps = 28/397 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T+I K + D DGL L + SGSK W++RY + T T ++ G+YP +S Sbjct: 2 LTNTKIHRLKTPTKLERHLDSDGLYLEVTKSGSKNWRYRY-KNHTGSWTMKALGSYPKIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR L + E K +F A W V K + Sbjct: 61 LEKARALLDDL------------------EVVAEYKCISFKETASEWL-VYKGYTSYKNK 101 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R +E + P +G+++I IK ++ ++ ++A+G LE RR+ ++++ Y Sbjct: 102 HLVHRRIENYLLPKLGNMTIANIKPKDILPILKQIEAKGHLELARRVQNILSQIFKYGVQ 161 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTA-SISMSTRCLFMWQLLT 245 + P+ + ++P ++MP+I + +L+ T+ +A ++ S + Sbjct: 162 NLYCETNPAQPLQGCTKQPSVRHMPAIVEQSEFARLLATIDSASNLMPSVKLCLQLAPHV 221 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R A+ + IDF+ W IP KM R+H +PL++ + +L+ + G E++ Sbjct: 222 FLRSQSIRMAKPEHIDFDRKLWVIPKD--KMGREHWIPLTEPVIEMLQTAIAQTNG-EYL 278 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEE-GFPPDVIEAALAH 363 F + IKPN P++ T+N AL+ G+ V HG RS ST E P D+IE L H Sbjct: 279 F-NGIKPNSPLSENTLNHALRSLGVDKQTHVFHGFRSSFSTLAREHCRLPGDLIELQLGH 337 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 ++ N+V+ AY+RS LE+RR +M W+ + S Sbjct: 338 IEGNQVKAAYDRSQRLEERRELMDKWSKYLAELAHLS 374 >UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7T3_LARHH Length = 416 Score = 285 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 120/410 (29%), Positives = 186/410 (45%), Gaps = 18/410 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLL-IKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTD + +P D GL L+ +K G+ W FR+ P +K+R G YPA+ Sbjct: 4 LTDRQAANIRPTDKAKAHGGVVGLWLIPLKEKGTGRWIFRFTSPTSKKRRDLGLGKYPAI 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN-TFLLVAERWWNVKKTSVTED 125 ++ A +L +++L+ + IDP +H++EQ ++ A TF A + Sbjct: 64 TIKQAGELGEAARLLVLQGIDPIDHKREQEAAAEAANERITFEQAAIHTHETLSPGWSNR 123 Query: 126 YADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A W SL R +FP IGD + ++ + P+ ET R+ QR+ VM + Sbjct: 124 HASADWINSLRRHVFPKIGDKPVADLVRRDFAAVLLPIWL-VLPETAARVRQRMQTVMEW 182 Query: 185 AQNTGLIDAVPS------VNIGKAFEKPQKKNMPSIRPDQLPQLMHT-MRTASISMSTRC 237 LI A + + + ++++ P++ LP + + R Sbjct: 183 CLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAAHLGEGRPVSVARP 242 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + + +LT R E WDE+D +A W IP RMK H VPLSD A+AIL + Sbjct: 243 MLEFLILTAARSGEVRGMVWDEVDLSAKVWTIPGERMKAGATHQVPLSDRAMAILRQQRE 302 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAG-----LGGVLVSHGLRSIASTALNEEGF 352 +FP + ++ T+ L G HG RS E G+ Sbjct: 303 RHPFSAMVFPPNR--GRVVSDMTLTRYLHEVDAPSDTEGRHATVHGFRSTFKDWAIEHGY 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 P ++ E ALAH+ KN+V AY+RS LEQRR +MQ WAD V++ +G I Sbjct: 361 PGELSEKALAHMIKNKVEAAYHRSSQLEQRRALMQAWADYVESGRAGGIT 410 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 285 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 109/406 (26%), Positives = 174/406 (42%), Gaps = 21/406 (5%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K TDT I+ K K+ Y+ ++G G + I + K W +RY + TK + G YPA Sbjct: 2 KNFTDTYIRNLKAKEKRYEEFEGGGFGIRITPNNVKTWIYRYK--INGVTTKFTLGHYPA 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SLS+A++ E + + +DP+ + Q L + Sbjct: 60 MSLSNAKRRFLELSQMRREGVDPKTVIQAQEEQDNNTVDKLALNWYTNYIEKHV-----K 114 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 I R ++ DI P +G + +++ + A+ + RGA R I ++ YA Sbjct: 115 RPLVIKRQIDNDIIPLLGKKKLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMFNYA 174 Query: 186 QNTGLIDAVPSVNIG----KAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 + G P+ NI EKP+++ + ++ + L +S TR Sbjct: 175 VSRGYTQFNPASNIRSRDIGGIEKPKERVL-TLEEIKALWLFLDSDLTQMSTQTRIAIKL 233 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LLT R E A W EIDF AS W IPA K + H V LS A ++ +KPLS Sbjct: 234 LLLTGVRTVELRLASWHEIDFEASLWTIPALHSKASIIHKVHLSKLAKSLFLQLKPLS-H 292 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKR----AGLGGVLVSHGLRSIASTALNE-EGFPPDV 356 +++ + P+ + A+KR G+ +H LR +T L E P V Sbjct: 293 SDYVLTG-VDGFHPITENALPRAIKRIQEKLGIPD-WTAHDLRRTFATQLGETLQIDPVV 350 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 IE L H + YNR++ L QRR ++ WA ++ ++V Sbjct: 351 IEKCLGHKMP-RIMATYNRNEMLPQRREALERWAVCIENMMQDNVV 395 >UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8T8_ACIBT Length = 425 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 110/419 (26%), Positives = 186/419 (44%), Gaps = 31/419 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L DT++K KP+D Y+ D D L + ++ SG K+W ++ L K+ ++G YP++S Sbjct: 2 LKDTQVKNLKPQDKPYRKLDADRLYIEVRPSGKKVWIHKF--SLNKKEGSITYGEYPSIS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR A + LLAK I+P H+ E R + E + TF + W K +EDY Sbjct: 60 LAEARYYHARDRALLAKGINPVAHRNETARLALETEQETFKKYGDEWKEKHKIDKSEDYK 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALE-------------TVRRL 174 I L+ DI+P IG + ++ + ++ + R T Sbjct: 120 KLIEYGLKTDIYPVIGHLHPKDVTSKHVLLIINNTMERIRTSTRSQKLKPSTGETTAIVN 179 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS 234 I +M GL + P+ + ++ + + + ++ +L + + + + Sbjct: 180 KTFIGMIMRSCIMKGLAEVDPTYAVKGVIKRQKINHARPLSMKEIRELKERIPLYNGAQT 239 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIP----------AARMKMNRDHTVPL 284 TR + T+ R E W +D+ P MK N+ H +PL Sbjct: 240 TRNALNFLFYTMLRTIEVRRLEWAWVDWENKTITFPERTFQEIIEGKRAMKNNKIHLLPL 299 Query: 285 SDGALAILEMMKPLSGGREFIFPSRI-----KPNQPMNSQTVNAALKRAGLGGVLVSHGL 339 SD A +IL+ ++ +F+F S + KP + + T+N AL + + H Sbjct: 300 SDQAFSILKEQYTITAKCQFVFSSPMQLTLGKPEKMLGRSTLNFALDALKMND-VSPHDA 358 Query: 340 RSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 R+ AST LNE G IE L+H D ++ R YN + +L RR M+QW+AD + Sbjct: 359 RATASTYLNELGSDDRWIEKQLSHTDNDKTRATYNHAKWLRNRRSMLQWYADFLDGKAE 417 >UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family n=1 Tax=Citreicella sp. SE45 RepID=D0D2S4_9RHOB Length = 479 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 114/400 (28%), Positives = 192/400 (48%), Gaps = 25/400 (6%) Query: 1 MARKTKP------LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ 54 MAR P LT +KAA +DG GL LL+K +GS+ W R + + Sbjct: 91 MARDVTPRKPEKALTAQRVKAATDPGK---YFDGHGLYLLVKPNGSRSWVQRIV--IRGK 145 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 R + G+ V+L++AR+ ++ + DP + ++E + TF A + Sbjct: 146 RREMGLGSASLVTLAEAREAALANRKVARAGGDPIQARQEALAVL------TFEEAARKV 199 Query: 115 WNVKKTSVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 + + + + +A +LE FP IG + + ++ + +++ + P+ ET RR Sbjct: 200 YEMHRPTWRNPKHASQFINTLETYAFPKIGAVKVGDVNTNDVLRVLTPIWTT-KPETARR 258 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKK--NMPSIRPDQLPQLMHTMRTASI 231 + QRI VM +A G P+ I +A K ++ + ++ ++P + T++ + Sbjct: 259 VRQRIGMVMKWAVAKGWRQDNPAEAISQALPKHDRRKAHRKAMPYAEVPGFIATVKASKA 318 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 T+ + +LT R E A W EID A+ W +PA RMK R+H VPLS AL I Sbjct: 319 GALTKLAMEFLILTAARSGEVRGASWSEIDSEAAIWTVPADRMKAKREHRVPLSPRALEI 378 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-E 350 L + +S G + +FP + +P++ T++ + G + HG R+ E Sbjct: 379 LSEARAISDGSDLVFPGSRR-GRPLSDMTLSKLTRELGFA--VDVHGFRTSFRMWAQEQT 435 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 P +V EAALAH +N+ AY RSD E+RR +M+ W+ Sbjct: 436 DAPREVAEAALAHTIRNQAEAAYARSDLFERRRSLMERWS 475 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 105/395 (26%), Positives = 174/395 (44%), Gaps = 16/395 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ +P+++ ++L DG GL LL+ SG + W RY + + + G YP +S Sbjct: 3 LSDAQLRKIRPRESRFELTDGKGLVLLVLPSGRRSWLLRYQ--FEGKPRRITLGEYPDMS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR ++ ++ + +DP + E+ + + T + LL +K++ Sbjct: 61 LLQARNASEATRSIIKQGLDPALKRTEEKTAHKTSPTVSDLLTEYWDMELKES----PSG 116 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R +E+D+ P G + EI + V+AR A T RL + + +A Sbjct: 117 KERRRLVEKDVLPPWGKRKVAEITRRDAALLLDTVRAR-APVTGNRLQGVLVRMFNFAAE 175 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA-SISMSTRCLFMWQLLTI 246 G+++ P + + K E+P+ + + L + TA I ++ LLT Sbjct: 176 RGVLEHSPLMGLRKKKEQPRSRVLADKEIKLLWDALALDNTAMDIYRVSKLALKMILLTG 235 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG-GREFI 305 RP E WDEID + W IPA RMK H VPL AL I+E + S G F+ Sbjct: 236 QRPGEVCGMTWDEIDGD--TWNIPAERMKSKEPHNVPLGSMALEIIEQARRYSPRGSTFV 293 Query: 306 FPSRIKPNQPMNSQTVNAALKR----AGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 F S P+ +++ A+ R G+ H LR T L E G V E L Sbjct: 294 FKSSHFKEGPITPHSLSKAILRHWQEMGVTERFTPHDLRRTLRTRLAEIGVDDVVGERVL 353 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 H + YNR Y +++R + W ++ Sbjct: 354 GH-KLQGIMAVYNRHSYDKEKRQALALWERKLREI 387 >UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RKK3_ACIRA Length = 426 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 114/428 (26%), Positives = 191/428 (44%), Gaps = 39/428 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRY----YRPLTKQ-- 54 M +K+K L+ + K + + DGL L ++ + S++W R + Sbjct: 1 MPKKSKELSALSVAKIKNT-GRHSVGGVDGLCLNVEGN-SRVWILRAVVGKRLDKDGKLK 58 Query: 55 --RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQ--VRNSQEAKTNTFLLV 110 R G YP VSL++AR E ++ + IDP H++EQ Q+ + TF+ Sbjct: 59 PHRRDIGIGPYPEVSLAEARAKATELRLQIRSGIDPIAHKQEQLEKLYVQKLRDKTFMEC 118 Query: 111 AERWWNVKKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALE 169 A+ K + + W +LE I+P +GDISI I + + ++P+ + E Sbjct: 119 AKVVIANKTRELKNEKHIGQWTSTLETYIYPTLGDISIGTITKVDIAEVLRPIWIK-KNE 177 Query: 170 TVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFE------KPQKKNMPSIRPDQLPQLM 223 T +R+ RI + YA+ G + E K + + PS+ +Q+ + Sbjct: 178 TAKRIRGRIETIFDYAKAMGYFEGDNPAEWKGNLEPIFGNIKQESRPHPSLPYEQVAGFI 237 Query: 224 HTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVP 283 +R + + +LT R E A+W EIDF W IP RMK N++H VP Sbjct: 238 QHLRQKKG--ISPKALEFAILTACRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVP 295 Query: 284 LSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA----------GLGG- 332 LS A+ +L+ ++ + ++FIFP+ ++ ++ +KR G Sbjct: 296 LSQEAVNLLKSIQEYTQPQDFIFPAPRN-GAMLSDMSLTILIKRMHEQKLKENGLGYIDP 354 Query: 333 ----VLVSHGLRSIASTA-LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQ 387 V+ +HG RS ++ +P +V E LAH +EV AY R YLE+R+ +M Sbjct: 355 KQNRVITTHGFRSTFRDWSADKTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMA 414 Query: 388 WWADLVKA 395 WA+ A Sbjct: 415 DWAEFCSA 422 >UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UI65_ECO1A Length = 352 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 151/293 (51%), Gaps = 4/293 (1%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L +I AKPK+ Y+L DG GL LL+K +G K W+ +Y + + + G YP V Sbjct: 2 KLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYR--VAGKEKLLALGVYPEV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +L+DAR R ++K +A IDP E ++E+ + NTF +A W + K + Y Sbjct: 60 TLADARAKREDAKRGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGY 119 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A DI + +D+FP IG I EIK L+ ++ ++ RGA E +++ QR EV YA Sbjct: 120 ASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAI 179 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 TG + P+ ++ A + + + P + +LP + + S S ++T Sbjct: 180 VTGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITG 239 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTV--PLSDGALAILEMMKP 297 R E A WDEIDFN + W+IPA+RMKM R H V P G I E+ P Sbjct: 240 LRTGELRGALWDEIDFNKAIWEIPASRMKMRRPHIVNRPGFPGECFICELRLP 292 >UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU Length = 419 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 112/396 (28%), Positives = 184/396 (46%), Gaps = 21/396 (5%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT +K D DG GL L + ++ K W FRY L KQR + G +PA+ Sbjct: 3 KLTPKFVKDV---DQPGSYQDGRGLILRVSATLRKSWVFRYM--LAKQRHDLALGTFPAL 57 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT--NTFLLVAERWWNVKKTSVTE 124 SL DAR + ++ +A+ +DP + + T +TF AER+ +S ++ Sbjct: 58 SLRDARLEADKYRLDIARGVDPAAERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSK 117 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + SL + ++PAIG I E+ ++ + P+ ++ T R+ RI V+ Sbjct: 118 KHHQQWQNSLTKHVYPAIGGFRIAEVDTDDILDVLTPIWSK-IPVTANRVRNRIELVLDA 176 Query: 185 AQNTGLIDAVPSVNIGKAFEK--PQKKN----MPSIRPDQLPQLMHTMRTASISMSTRCL 238 A+ L +K P++ + PS P + +L+ + + S + Sbjct: 177 AKALKLRQGENPARWRGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGSAA--RA 234 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 + +LT TR E + A+W EID+ W IPA RMK + H VPL++ L +L + + Sbjct: 235 VEFAILTATRNQEVSGAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLR--QQV 292 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN-EEGFPPDVI 357 ++IF + + P+ + L + + G +V HG RS T E +V Sbjct: 293 GKHDKWIFLNSWRTG-PIPGNAMARVLDQLQVDG-VVPHGFRSTFRTWAAEETDHQREVC 350 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E ALAH ++V AYNR D L++RR +M+ W D + Sbjct: 351 EMALAHTLNSKVEAAYNRGDLLDKRRALMKDWGDFL 386 >UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QCE7_9RHIZ Length = 418 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 186/409 (45%), Gaps = 23/409 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + T L K DG GL L +K SG++ W FRY ++ Sbjct: 1 MPKTTHRLNAISASNIK---KPGLYPDGAGLYLRVKPSGARSWVFRYMH--DRKPRYLGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERWWNVK 118 G+ +VSL+ AR L +++ L DP E ++ R + K TF AE + Sbjct: 56 GSAASVSLATARSLAGDARRQLDLGQDPIEAKRAAERETAADKARAMTFKECAEAYMAAH 115 Query: 119 KTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + S + W +L R ++P G I++ + + +A+QP+ ET R+ R Sbjct: 116 EPSWKNAKHCEQWHSTLRRYLYPKFGGIAVALVTTEMVFEAIQPIW-HSMPETASRVRGR 174 Query: 178 INEVMIYAQNTGLIDA-VPSVNIGKA---FEKP----QKKNMPSIRPDQLPQLMHTMRTA 229 I V+ +A+ G P+ G KP + ++ ++ D LP LM +R A Sbjct: 175 IEVVIDWAKARGAFSGENPARWRGHLANLLPKPSKVAKVEHHAAMPFDDLPALMSELRAA 234 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + T + +LT R EA A+W E D W +PA RMK +DH VPLS A+ Sbjct: 235 TG--LTSRALEFTILTAARTTEALGAQWSEFDLEKKIWTVPAVRMKAGKDHRVPLSTRAV 292 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 I++ ++ + EF+FP KP + +++ ++ L+R G L HG RS E Sbjct: 293 EIIKELETV-KRNEFVFPGE-KPGRHLSNMSMLMLLRRLK-RGELTVHGFRSTFRDWAAE 349 Query: 350 EG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 FP ++E ALAH +++V AY R D LE+RR +M W A Sbjct: 350 TTSFPNFIVEMALAHAIESKVEGAYRRGDLLEKRRALMVAWMQYCAKAK 398 >UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholderiales RepID=A1W6C2_ACISJ Length = 459 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 101/399 (25%), Positives = 175/399 (43%), Gaps = 24/399 (6%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT ++ + DG+GL L I + K W FRY R G V Sbjct: 6 KLTALKVTRL---SKPGRYSDGNGLYLQITKALVKSWIFRYARGTG--EHFMGIGPVHTV 60 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ--EAKTNTFLLVAERWWNVKKTSVTE 124 +L++AR+ ++++LL +DP H+ E + ++ +A F + + K S Sbjct: 61 NLAEAREQARKARLLLRDGVDPLMHRAEALAKAKAVQASNKIFRDCMDEYIKSHKESWRN 120 Query: 125 DYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + W +L P G + + I +++ ++P+ + ET R+ +RI V+ Sbjct: 121 EKHQKQWEATLVEYACPVFGKMHVRLINTPLVLQVLEPIW-KTKTETASRVRERIERVLA 179 Query: 184 YAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTASISMST 235 +A G + ++ + ++ PS+ + + + Sbjct: 180 WATTQGFREGENPARWRGHLQELLPKPSKLKKVRHHPSLPYGHVGAFVRLLAREKG--IA 237 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 + +LT R E A+W+EID +A W IP RMK +++H VPL A+ +LE + Sbjct: 238 ARALQFTILTACRTGEVIFAKWNEIDLDAKVWIIPKERMKAHKEHRVPLVRDAVTLLERL 297 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPP 354 + L ++FP K N+PM++ + L+R + HG RS T E +P Sbjct: 298 RGL--DPVWVFPG-AKQNRPMSNMAMANVLERMQRSD-ITVHGFRSTFRTWAAERTLYPK 353 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 ++ E ALAH EV AY R+D E+RR +M+ WA+ Sbjct: 354 EMPEMALAHKVGTEVEEAYRRTDLFERRRALMRDWAEWC 392 >UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJP3_HIRBI Length = 395 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 126/406 (31%), Positives = 190/406 (46%), Gaps = 26/406 (6%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M T L+D + K AK + DG GL L +K +G++ W F Y +R Sbjct: 1 MPDLTSNKLSDLKCKRAKTG----RHSDGGGLYLNVKQTGARNWLFIYRW--GDKRPSIG 54 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G YP+VSLS+ARK A + L + ++ V N+ E + F A R + K Sbjct: 55 LGGYPSVSLSEARKQAAMCRDWLNQTPRKDPKKEWMVLNAPEVRIEPFGPFALRHIDAIK 114 Query: 120 TSVTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 WRS LER P + EI+ ++K ++P+ A ET RR+ RI Sbjct: 115 GDFRNAKHIAQWRSTLERYAEPIWAK-PLNEIEVDHVLKCLEPIWAT-KNETARRVRGRI 172 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFE------KPQKKNMPSIRPDQLPQLMHTMRTASIS 232 V+ A+ G+ + + + +P++K++ ++ DQ+ T+R S Sbjct: 173 EAVLESARVRGMREDPNPASWNGQLKHVLGRKRPKQKHLAALEYDQMHAFWQTLRQKSG- 231 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 + +LT R E A W+EID A W IPA RMK + H VPLS ALAI+ Sbjct: 232 -IGALALQFTILTAARSGEVRGATWNEIDIEAGIWSIPAERMKAEKPHMVPLSQAALAII 290 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL----GGVLVSHGLRSIASTAL- 347 + + G E IF ++ +P++ T+ AL+ L G + +HG RS S Sbjct: 291 DHISKARQG-ELIFMG-MRAGKPISDMTMTKALRDMKLTNSQGEAVTAHGFRSTFSDWAR 348 Query: 348 NEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 NE FP ++IE +LAH +V AY R +E+RR +M+ WA V Sbjct: 349 NETDFPRELIEESLAH-SLGKVEAAYRRGQAIERRRALMEAWALYV 393 >UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCI3_9SPHN Length = 325 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 3/324 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+ IKAAK +D Y+L D DGL L + +G++ W+ Y ++ +FG +PAV Sbjct: 3 LSAVAIKAAKSRDKPYKLADRDGLYLEVSPTGARSWRMNYRYL--GKQKTLTFGRWPAVG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DARK ++ +LA+ DP E K + + A ++F VAE + + Sbjct: 61 LADARKKCDAAREVLARGDDPGEQAKLERIAASVASASSFEAVAEEYLAKIEKEGRSSVT 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 R L I +IG I+ I A L+ ++ ++ +G ET RRL +++ YA Sbjct: 121 MKKKRWLIGFIDKSIGKRPISAISAPELLLTLRKMEKKGKYETARRLRSTCSQIFRYAIA 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 TG + +V++ A P+ + P+I ++ L+ ++ + +T+ Sbjct: 181 TGRAERDVTVDLRGALIVPKAVHRPAITDASKVGGLLRSIESFDGHPTTQIALKLVPHVF 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E A W E D +A+ W IPA + KM R H +PLS L I+ ++ + F+F Sbjct: 241 VRPGELRHAEWTEFDLDANVWTIPAEKTKMRRPHAIPLSRQTLEIIASIEHDADYSRFLF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGL 330 PS +PM+ T+NAAL+R G Sbjct: 301 PSLRSVQRPMSENTINAALRRMGY 324 >UniRef50_Q0BR52 DNA integration/recombination/inversion protein n=6 Tax=Alphaproteobacteria RepID=Q0BR52_GRABC Length = 380 Score = 280 bits (717), Expect = 6e-74, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 198/368 (53%), Gaps = 20/368 (5%) Query: 48 YRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTF 107 + SFGAYP VSL++AR RA++KV+L + DP K + + + F Sbjct: 2 KYRYGGKEKLLSFGAYPGVSLAEARLRRAKAKVVLGEGGDPGAGNKPRTQMT-------F 54 Query: 108 LLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 A +W + ++ +A + LERD FP +G + ++ I ++ V+ V+ARGA Sbjct: 55 EEAARKWHGHRLDALDAGHATRLLTRLERDAFPVLGKLGLSVITPTDVLAMVRRVEARGA 114 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTM 226 L+ RRL Q ++++ +A G + P+ ++G+ KP+ ++MP I +LP L+ + Sbjct: 115 LDVSRRLKQHVSQIYRFAIAHGWAERDPAEHLGQLLKPKPRTRHMPRIGRSELPALIRAI 174 Query: 227 RTASISMS------TRCLFMWQLLTITRPAEAAEARWDEI-DFNAS--EWKIPAARMKMN 277 + TR ++ LLT R E ARW+E D + + W++PA RMKM Sbjct: 175 DGYDGEETPRRRAVTRAALLFTLLTWVRTNETRHARWEEFEDLDGASPVWRVPAERMKMV 234 Query: 278 RDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSH 337 R+H VPL+ +A+L+ ++ S +++F KP+QP++ T+ A R G G H Sbjct: 235 REHVVPLAPAVVALLQEVRVYSLA-DYVFVGE-KPDQPISQNTMIYACYRMGYRGRQTVH 292 Query: 338 GLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 G R +AST NE + PD IE ALAHV+++EVR AYN + YL RR M++ WA +++ Sbjct: 293 GFRGLASTWANEAECYQPDWIEMALAHVERDEVRGAYNAALYLSPRRRMLEDWAGFIQSH 352 Query: 397 DSGSIVLT 404 S + V Sbjct: 353 LSAAPVAD 360 >UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP99_HAHCH Length = 416 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 110/415 (26%), Positives = 183/415 (44%), Gaps = 15/415 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSK---LWQFRYYRPLTKQRTKQSFGAY 63 L+DT+I+ AK + D L DG+GL+L I K W FRY RP TK+ K S G Y Sbjct: 3 KLSDTKIRNAK-TETDTCLSDGNGLSLRIYPKRGKIARTWVFRYRRPATKKPAKLSLGDY 61 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P +SL AR+ + L + +DPQ QKEQ + A T L + VT Sbjct: 62 PVISLRAARQQAEIMRQQLFEGLDPQYVQKEQRAENANAITTQQLFESWLTLQKSAKEVT 121 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + D + ++G + + + + + A+G E R+ + + Sbjct: 122 DRTLADHEARWRVHLEKSLGPLLAKHVIRRQIAAVLDSMVAKGIKEETRKCLCLLKMLFR 181 Query: 184 YAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 +A+ LI P + ++ +L + +ASI+ +T F Sbjct: 182 FAEERHLIKENPIEGLSAKSFKITAGAPRDRALPLSELRSFWRLLDSASITPATANAFKL 241 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +LT R E RW E+D W +P R K + HT+ L + A+ ++E M+P+SG Sbjct: 242 LILTGARRGEVTMMRWSELDLTQGMWVLPPERTKNRKAHTLYLPNLAMRLIESMRPISGH 301 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLG----GVLVSHGLRSIASTALNEE-GFPPDV 356 E++ S P++++ + L+R H LR A+TA E P V Sbjct: 302 GEYVL-SLGNGITPLSTEGLTVTLRRLSTRLESVPHFTVHDLRRSAATAWGEHLKTSPHV 360 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK---AADSGSIVLTHLSK 408 IE L H ++ + Y R+ Y+++++ + W ++V+ A D G++V H + Sbjct: 361 IEKMLNHQPRDRLVATYQRAAYIDEQKMAWKAWGEMVENHVANDFGNVVPLHARQ 415 >UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobacteriaceae RepID=B7UT12_ECO27 Length = 411 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 115/412 (27%), Positives = 179/412 (43%), Gaps = 32/412 (7%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLT--------K 53 A++ L + +K+ + Y + + DGL L I+ + S+ W Sbjct: 8 AKELSGLVVSRLKS----EGMYAVGNVDGLYLRIR-NQSRAWVLCVAMGTRINNLGRTVP 62 Query: 54 QRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ--EAKTNTFLLVA 111 +R G YP VSL++AR E + + I+P + + EQ + K TF Sbjct: 63 RRLNMGLGPYPEVSLAEARDKARELRKQIRNGINPLQEKHEQKARQEILARKKKTFAECC 122 Query: 112 ERWWNVKKTSVTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET 170 E VK + + WRS LE +P IG +++EI L+ ++P+ ET Sbjct: 123 EEVLEVKDSEMKNKKHLAQWRSTLETYAYPFIGKKAVSEITKVDLLAILEPIWLT-KNET 181 Query: 171 VRRLCQRINEVMIYAQNTGLID-AVPSVN---IGKAFEKPQK----KNMPSIRPDQLPQL 222 RL RI V+ YA+ + P+ + +P K K+ ++ +Q+ Sbjct: 182 ASRLRGRIETVIDYAKAKEYFEGDNPAAWKGMLKPLLPQPSKVQITKHHAALPYNQIGSF 241 Query: 223 MHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTV 282 M +R S + + +LT R E A W EID W IPA+RMK ++H V Sbjct: 242 MKELRERSG--VSPRALEFAILTAARSGEIRGAEWSEIDLEGKTWTIPASRMKAAKEHRV 299 Query: 283 PLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSI 342 PLSD A+A+L+ + G F+FP+ K ++ + A LKR G L HG RS Sbjct: 300 PLSDAAVALLKALPRFKGIS-FVFPATRKGQ--LSDTALLAVLKRMGYTD-LTQHGFRST 355 Query: 343 ASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E +P +VIE ALAH ++ AY R +R +M W+ Sbjct: 356 FRDWAGETTNYPREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDEWSGFC 407 >UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus taiwanensis RepID=B3R9I1_CUPTR Length = 412 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 104/405 (25%), Positives = 168/405 (41%), Gaps = 17/405 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L + I+ +K + + DG+GL L ++ SG+K + RY + R + G +P + Sbjct: 3 KLNNRLIERSKIQPKTKFIADGEGLYLRLEPSGTKTFCLRYT--VAGSRKLKVLGTFPDM 60 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 ++ ARK +E + LL KE + W ++ Sbjct: 61 DIAAARKQASEMRELLEVHDSLPSASKEVDALTSPITVAQLAT----EWEMRYCRQRYKR 116 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D L+ DI P IG + + + + + RGA R + + YA Sbjct: 117 PDKELHYLKSDIVPVIGQELVQNVTGRHVSLVIGKIVDRGARTKANRTLCVLKSLFGYAV 176 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS--ISMSTRCLFMWQLL 244 G IDA P K +K + P ++ L H + + ++ T+ L LL Sbjct: 177 EHGYIDATPVAMTKKGAGGAEKARSRVLNPKEIETLWHALDSRRRRMNWRTKALLKLILL 236 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T RP E RW+++D W +PA K +RDH V LS A++IL+M + +GG + Sbjct: 237 TAQRPGECCGMRWEDVDLANGIWFLPAELTKSDRDHVVHLSHMAVSILKMAEKETGGSVY 296 Query: 305 IFPSRIKPNQPMNS-QTVNAALKRA------GLGGVLVSHGLRSIASTALNEEGFPPDVI 357 +F S +K + + A+ R G H LR AST + G P + Sbjct: 297 VFNSVVKGRDVATTVDALTRAVARMLANGEFGAMKRFTPHDLRRTASTGMANAGVYPHIT 356 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 E L H K V YN +YL +R+ M+ W L++ G++V Sbjct: 357 EKILNHRMK-GVLAVYNHGEYLPERKAAMELWGRLIEGW-VGNLV 399 >UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=Proteobacteria RepID=A2SG96_METPP Length = 466 Score = 276 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 112/441 (25%), Positives = 188/441 (42%), Gaps = 36/441 (8%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFG 61 + + LTD ++KA KP+D Y++ D DGL + SG+ ++ Y + ++R + G Sbjct: 15 PLRARSLTDLQLKALKPRDKAYKVSDRDGLYAYVAPSGTVSLRYDYR--IGRRRETLTLG 72 Query: 62 AYPA------------------VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAK 103 Y A +SL++AR L ++K L + + P + EQ +A Sbjct: 73 RYDATAPARVPRSLDVLEYGMGLSLAEARLLLTKAKRALEQGVSPSRAKAEQKAAESDAL 132 Query: 104 TNTFLLVAERWWNVKKTSVTE------DYADDIWRSLERDIFPAIGDISITEIKAHTLVK 157 T F AER++ K ++ + +R + +G + + EI + L Sbjct: 133 T--FGKWAERYFEFKGDPKSKGEQLADSTLAMRRSTYKRALEKPLGKLMLEEITPNRLAA 190 Query: 158 AVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD 217 ++A+ + + V + Q G+ P+ + + + ++ P Sbjct: 191 LCDDIKAQRGPAVAVHAREIVLMVYRHVQRKGIEVPNPAERVQASAIARFEPRDRALSPS 250 Query: 218 QLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN 277 +L + + + + R + LLT R E A WDEI F+ W IP+ RMK Sbjct: 251 ELRLFLAALDQCATMPTLRLAVRFVLLTGVRKGEFIGATWDEIVFDTETWTIPSRRMKGG 310 Query: 278 RDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG------ 331 R H V LSD A+ IL ++ ++ P R + P++ T+N + A G Sbjct: 311 RAHVVYLSDQAMDILTTLRSCFSASRYLHPGRYDSDLPISDATLNRVIAMAIRGIQATAP 370 Query: 332 --GVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWW 389 H LR ST+LN F IE ALAHV +N + YN + Y +RR MMQ W Sbjct: 371 EFQPFTVHDLRRTFSTSLNRAKFDERWIEMALAHVPRNRIAATYNVARYAAERRIMMQAW 430 Query: 390 ADLVKAADSGSIVLTHLSKIR 410 AD++ + G + K + Sbjct: 431 ADMLDLWEKGESAKEVILKAK 451 >UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria RepID=B0SXU9_CAUSK Length = 399 Score = 275 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 108/410 (26%), Positives = 171/410 (41%), Gaps = 27/410 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R LT + K + DG GL L I G + W F Y R +RT+ Sbjct: 1 MGRSLHKLTAIQAAKLKV---PGRHSDGGGLYLSIDDGGRRRWVFIYTR--GAKRTELGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +SL++AR A + +LA +DP+ + + + TF A+ + + Sbjct: 56 GGGRDLSLANARVEAAAFRTMLADGLDPKVERAR------DDQAQTFGACADAYVEAMRP 109 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 S + W+ I + + E+ ++ +QP+ R ET RL R+ Sbjct: 110 SWRNEKHAAQWKMTLTKYAAPIRERPVKELTTQDILDVLQPLWTR-TPETAERLRGRMEN 168 Query: 181 VMIYAQNTGLIDAVPSVNIGKAF-------EKPQKKNMPSIRPDQLPQLMHTMRTASISM 233 V+ A+ GL ++ + + ++ D +P M +RT S Sbjct: 169 VLDAAKAKGLRTGENPARWRGHLNQLLPKRQRLARGHHAALAYDLIPDFMANLRTR--SA 226 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 + +LT +R E A W+E D + W IPA RMK R+H VPLS A+ I E Sbjct: 227 VAARALEFAILTASRSGEVLGATWNEFDLDKKVWVIPATRMKAGREHRVPLSARAMEIAE 286 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGF 352 G+ ++F K +P++S + L+R + HG RS +E GF Sbjct: 287 AQ--FDDGKGYVFAGP-KLGKPLSSMAMAMLLRRM--KSDITVHGFRSSFRDWASETTGF 341 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 +V E ALAH N+ AY R D ++RR +M+ WA + +V Sbjct: 342 SHEVCEMALAHTIANKAEAAYRRGDLFDKRRKLMEAWAGYCATQKADQVV 391 >UniRef50_B9R123 Site-specific recombinase, phage integrase family protein n=3 Tax=Alphaproteobacteria RepID=B9R123_9RHOB Length = 451 Score = 275 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 120/432 (27%), Positives = 188/432 (43%), Gaps = 38/432 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDAD----YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 M + + LT E+K K + + GL + + SSG K W R + +R Sbjct: 22 MPKAARELTPLEVKRLKNSGRGGNELHFVGGVSGLAIQLLSSGGKTWILRTT--VGYKRR 79 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERW 114 G YP VSL+ AR+ E+K L+ + +DP EH+K + + + + +F +R+ Sbjct: 80 DIGLGGYPDVSLAQARERARETKELIRQGVDPIEHRKSLQSQLVASQMRGLSFSDAVDRY 139 Query: 115 WNVKKTSVTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 +VK + + + W S L+ P +G + + I ++ +QP+ ET R Sbjct: 140 LSVKSAELRNEKHKEQWASTLQTYALPHLGKMLVDNITTQDILLVLQPIW-TDKTETASR 198 Query: 174 LCQRINEVMIY----AQNTGLIDAVPSVNIGKAFEKP----QKKNMPSIRPDQLPQLMHT 225 L RI V+ + TG A + N+ + P + N P+I + Sbjct: 199 LRGRIEAVLSWSTVSGHRTGENPARWAGNLKELLPSPSKIAKSGNWPAIALVEADSWFEG 258 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 +R + + + L +R E +A W EID W IP RMK+ +DH VP Sbjct: 259 LRLRDGTAA--RALEFLALCASRSGEVRKATWSEIDHKQKTWVIPGERMKVGKDHRVP-L 315 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA-------GLGGVL---- 334 L P FIFP+ P++ ++A ++R G G Sbjct: 316 SATALALLDALPKREDSPFIFPAPR--GGPLSDMALSAVMRRMHSVELDNGRPGWRDPRN 373 Query: 335 ----VSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 V HGLRS E GF D+ E AL+H +EV RAY RSD +E+RR MM WA Sbjct: 374 GHPAVPHGLRSTFRDWAAESGFARDMAEIALSHSVGSEVERAYRRSDLIERRRGMMSAWA 433 Query: 391 DLVKAADSGSIV 402 + ++ A + +IV Sbjct: 434 EFLRGATASNIV 445 >UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3_FRATN Length = 413 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 106/428 (24%), Positives = 192/428 (44%), Gaps = 44/428 (10%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ LT +++++ K DY+L DG+GL + + +GSK WQFRY + Sbjct: 1 MAKT---LTASKLQSLKATGKDYRLNDGNGLYIKVSKAGSKSWQFRY------KGKWLGI 51 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YPA+SL AR + +LA DP+ +++ N F +V+ + + K Sbjct: 52 GSYPAISLKQARDEAFKYNQMLAGGKDPKLEKEKGKYQD----NNLFSIVSAKAFETKDP 107 Query: 121 S-----VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 S +E+ + R I P++ +I +I+ + L ++ R++ Sbjct: 108 SKPYGWKSEEVYNRNLSIYNRFILPSLKTFNINDIEPYQLAGILETT----TPSNQRKIK 163 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLP----QLMHTMRTASI 231 +N + YA G++ + +I E P K I P + QL++ + Sbjct: 164 NLLNMIFTYAVGKGILKYNIARDIQAEKEDP--KGFEFINPVEDKYNFSQLLNDIYNYKG 221 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEI---DFNASEW---KIPAARMKMNRDHTVPLS 285 +T+ +L RP +W++I + + + I A MKM+RD PLS Sbjct: 222 QYNTKMALKLAVLVGFRPNNIVSMKWEDIQEANIDGKKIPFVFISADNMKMSRDFRQPLS 281 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKR-AGLGG----VLVSHGLR 340 A +L +K +GG E++F S K + + ++++ AL+ G G +HG R Sbjct: 282 KQAYKLLMEIKEYNGGFEYVFHSLSKK-KHITIESLSKALRDTLGYNGTDKPKQHTHGFR 340 Query: 341 SIASTAL----NEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 T + ++ + D I L+H +N + Y+++D+L +R M+Q WAD V Sbjct: 341 KSVRTYISSIRSKYNWCSDSIRMILSHSKENAIDNIYDKNDFLLERSQMLQLWADYVDDV 400 Query: 397 DSGSIVLT 404 + S ++ Sbjct: 401 KANSNIIN 408 >UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FR8_THICR Length = 396 Score = 273 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 100/405 (24%), Positives = 174/405 (42%), Gaps = 21/405 (5%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 L+D +I+ A L DG GL++ I +K ++FRY RP+ K+ G YP Sbjct: 2 INKLSDVQIRKAVHPSTK-SLSDGKGLSIEIMPK-AKRFKFRYQRPVNKKINNLVLGYYP 59 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 ++SL AR++ + + LL K IDP+ ++ F + + + K +E Sbjct: 60 SMSLKAAREIAQQYRELLKKGIDPKYQ--------TSSEKVDFDHIIQLYLKKGKADWSE 111 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + E + G+ +I + + ++ V G+ T +L I+ Sbjct: 112 KHFNTTKGRYENFLKNPFGNRDAAQITSFDIYNLLESVAQSGSYGTAEKLSYIISGAYSQ 171 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKK----NMPSIRPDQLPQLMHTMRTA----SISMSTR 236 A G++ P+ + K K +K + R + +L + +++ + Sbjct: 172 AAILGMVKFNPAAGVMKQVTKTKKTQQMPHFNLTRKGESERLGRFLNDIKALNKTNIAVK 231 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-DHTVPLSDGALAILEMM 295 + L R A + + D + I A MK + D VPLS A+ +LE + Sbjct: 232 TALLLSPLLFMRSGSLASLKLESYDKDNKWLLINAEDMKKDHSDFIVPLSTQAINLLETL 291 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPP 354 + + ++F SR + + +N A R+G + HGLR A+T L E GF Sbjct: 292 IAATKPKIYVFESRASKLGHIRIEAINKAKSRSGWRFDDVTIHGLRHTATTYLTEIGFDY 351 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 +V E L H VR YN++ +L++RR MMQ WAD + +G Sbjct: 352 EVTEMQLHHKLV-GVRGIYNKAMHLDKRREMMQKWADYLDNLRNG 395 >UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus RepID=C7JFF4_ACEP3 Length = 434 Score = 273 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 110/403 (27%), Positives = 195/403 (48%), Gaps = 22/403 (5%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M+R L+ ++ K D L DG GL L++ GS+LW+FR+ P+T +R + S Sbjct: 36 MSRLPPNQLSALKVSRHKSGD----LCDGGGLWLVVT-GGSRLWEFRFKSPVTGKRRQMS 90 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G+ ++SL+DAR+ A+ + + +DP ++++ + K TF VA ++ + Sbjct: 91 LGSAYSLSLADAREKAAKCRGMTENRLDPIIEREKEKAARELEKGLTFAEVAAQYIKAQT 150 Query: 120 TSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + + + +W SL + +FP G+ S+ ++ ++ A++P+ ET R+ RI Sbjct: 151 PAWKDHRSPAVWTSSLTQHVFPIFGEKSVRDVDTQDVLTALRPIWTE-KTETSGRIRGRI 209 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAF--------EKPQKKNMPSIRPDQLPQLMHTMRTAS 230 ++ YA+ + + + ++ + + ++M +++ + Sbjct: 210 ERILDYARVQQWREGENPARWRGHLSVMLPAPSKITKVQHHKAAEWKDISEIMKALQSIN 269 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + + LT R E A W EID + + W +PA +MK R+H VPLS A+ Sbjct: 270 GMAAK--AVRFCCLTAARSGEVRNAVWSEIDLSEALWVVPAEKMKAGREHRVPLSGDAVK 327 Query: 291 ILEMMKPLSG--GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 +L+ + P + +FP K +P++ V+ AL A + HGLRS Sbjct: 328 VLQEVLPHRDAVSGDLLFPG-AKRGRPLSDVAVSKALHHAAGTKEVTVHGLRSTFRDWAG 386 Query: 349 EEGF-PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 E +V EAALAH K++V AY RSD L+ RRP+M+ WA Sbjct: 387 ETKVCSREVAEAALAHAGKSKVEAAYFRSDLLDLRRPLMEEWA 429 >UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDX8_ERYLH Length = 396 Score = 273 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 116/393 (29%), Positives = 180/393 (45%), Gaps = 19/393 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT + KA K + DG+GL L++K+SG+K W R +R G V Sbjct: 14 KLTAVKAKAIKEAG---RYSDGNGLQLVVKASGAKSWILRVQH--DGKRRDIGLGPLSEV 68 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 ++AR+ E++ ++ DP + R S T F +A + + K+S Sbjct: 69 GPAEAREKAVEARKVIRGGGDPSGLKSGSGRISGRPPT--FRELATSYHDDHKSSWKNAK 126 Query: 127 ADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + W +L+ FP GD + + + ++ ++P+ ET RR+ QR+ V+ YA Sbjct: 127 HREQWLSTLDTYAFPIFGDQPVDRVDSRDVLDCLKPIW-NAKPETARRVLQRVLRVLNYA 185 Query: 186 QNTGLIDAV-PSVNIGKAFEKPQ--KKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 G + P+ +I A K + ++ S+ ++P+LM + AS + Sbjct: 186 HGMGHREHEAPTQSIRAALGKQRSQVRHHASLPYAEMPELMAKLEAASG--VGAMALRFA 243 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT R E A+W+E+D W +PA RMK R H VPLS ALAILE K L Sbjct: 244 ILTAARSGEVRGAQWNEMDLAKKTWTVPAERMKARRAHAVPLSPAALAILEDAKGLRKKP 303 Query: 303 E-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAA 360 E F+FPS ++ T+ A++ A HG R+ E P EAA Sbjct: 304 EGFVFPSSR--GIALSDMTLLKAIRAASDQN-TTVHGCRTSFRVWAAEKTSCPAAAAEAA 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 LAH N+ AY+R+DYL+ RR +M W + Sbjct: 361 LAHTIHNKAEAAYHRTDYLDIRRQLMADWGAFL 393 >UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12EX0_POLSJ Length = 410 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 101/420 (24%), Positives = 179/420 (42%), Gaps = 23/420 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +K L ++ + Y + GL L +K SG++ W R + R Sbjct: 1 MPKKAVELGALQVSRL-TQPGRYAVGGVAGLHLWVKPSGNRSWILRVL--VGAIRKDIGL 57 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVR--NSQEAKTNTFLLVAERWWNVK 118 G YP V+L+ AR ++ + + ++P E +++ + +AK TF + + + Sbjct: 58 GGYPDVTLAGARDAARRARDQILQGVNPIEQRRQAKALLMADQAKAKTFKDCSAAFIEDR 117 Query: 119 KTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 W +LE FP IG + + +I +++ ++P+ + ET R+ R Sbjct: 118 GDEWRNPKHRQQWHNTLETYAFPFIGGLFVRDISLAHVLEVLRPIW-KTKTETAARVRGR 176 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTA 229 I V+ +A G ++ + ++ ++ D L + +R Sbjct: 177 IETVLDWAAVRGYRAGDNPARWKGHLDQVLPKPSKVKKVEHHSAVGLDDLAGFIAAVRRV 236 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + + +LT R E A W E D A++W +P RMK +H VPLS A+ Sbjct: 237 PGMGA--RALEFAILTAARSGEVRGALWSEFDLKAAQWIVPPERMKAGEEHRVPLSKQAI 294 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L+ + G + +F Q ++ T++A ++R + V HG RS +E Sbjct: 295 KLLKSIPRFEG-SDVVFCGI--KGQVLSDMTLSAVMRRMEVN--AVPHGFRSTFRDWASE 349 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 FP ++ E ALAH +++V AY R D L +R MMQ WAD + + V+ K Sbjct: 350 RTNFPRELAEKALAHTIESKVEAAYRRGDLLAKRMQMMQAWADFCETPVNKGTVVPLKRK 409 >UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter RepID=A7ZG37_CAMC1 Length = 406 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 122/415 (29%), Positives = 204/415 (49%), Gaps = 31/415 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDG---LTLLIKSS---GSKLWQFRYYRPLTKQ 54 MA T D +K K+ + + DG L +L + +K + F+Y K+ Sbjct: 1 MASFTN---DLALKKFTLKNKNREWVKDDGVKFLYVLAYKTQKETTKTFYFKYQESNQKR 57 Query: 55 RTK-QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAER 113 TK G YP+++L++AR E + L + D + + KT TF VA+ Sbjct: 58 TTKQIKIGKYPSITLAEARAKALELERLRDRGED-------LQTATAKQKTITFKDVADE 110 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA-----L 168 W + +++ + I R +E+++ P +GD +ITE+K A++ +QAR A Sbjct: 111 WIDKEQSKELIAFNKQIGR-IEKNLIPYLGDKAITELKRRDYAHAIEQIQAREAKRGITH 169 Query: 169 ETVRRLCQRINEVMIYAQNTGLIDAVPS--VNIGKAFEKPQKKNMPSI-RPDQLPQLMHT 225 ET R + + +++ A N G I+ P+ + AF+ + +I P +L +L+ Sbjct: 170 ETSLRTFRLLRKILDLAVNKGYIEHNPTRDIIFNDAFKTSTNNHFKAITEPKKLKELLGA 229 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 M+ S T+ ++ + T R A +W +DF + PA MK+ +P+S Sbjct: 230 MQDYQGSFYTQQALIFGVHTFLRSANVRGLKWQYVDFENNLITFPAEAMKLREVFYMPMS 289 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST 345 +L+ M G +F+FPS I +P++ T+N A+KR G G +V HGLR+ AST Sbjct: 290 KQVKKLLKTMLEHKRG-DFVFPSGISATRPLSDSTLNQAIKRLGFGDEMVFHGLRTTAST 348 Query: 346 ALNE----EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 LNE GF DVIE L H +++ V+ Y+RS L++R +MQWW+D + + Sbjct: 349 LLNENIKNHGFSSDVIELCLDHKERSSVKAIYDRSQRLDERAKLMQWWSDYLDSL 403 >UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM9_9DELT Length = 409 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 163/392 (41%), Gaps = 20/392 (5%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 ++ +I+ +P+ Y L + +G ++ I SG+K W F Y +R + + G YPAV Sbjct: 2 KFSEAKIRNLRPQSKKYYLREANGFSVRIMPSGAKTWLFIYT--FDGKRKEMNLGHYPAV 59 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +L AR+ + L + DP E+ + +T + + + N + Sbjct: 60 TLEAARRKYRAAFDLFEQGNDPVAMHLEKKEERR--RTPFLSDLVDEYINKHAMRFKRSW 117 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A D L RD+ PA G +I ++ ++ + RG+ Q I ++ +A Sbjct: 118 AKDQ-AILNRDVVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAV 176 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 + +++ P + K + + + +++ L + A IS + L+T Sbjct: 177 DREILEISPCTGVKMPAPKMARDRV--LSEEEIRVLWSGLERAKISHEVQRAIKLILVTA 234 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E + EI W IPA R K + H V L+D AL ++ F+F Sbjct: 235 QRPGEVMGMDFSEI--EGRWWTIPADRAKNGKAHRVYLTDTALELIGE-----NTGGFVF 287 Query: 307 PSRIKPN--QPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 PS +P+ S + A +R H LR A+T + E G +VI+A L Sbjct: 288 PSPRHRENPRPIGSNAMTVAHRRNKDKIPLEDFTPHDLRRTAATFMAEMGTMDEVIDAIL 347 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 H V R YN+ Y +++ ++ W + Sbjct: 348 NHSKM-GVIRVYNQYRYDTEKQATLEAWERRL 378 >UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25017 RepID=B0U0U5_FRAP2 Length = 398 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 117/408 (28%), Positives = 188/408 (46%), Gaps = 26/408 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T+IK K + ++ D GL L + +G+K WQ R + ++R G+YP+ + Sbjct: 2 LTETKIKKIKATGKEQRVIDTLGLYLRVDKNGNKTWQLR--HTINEKRKWFGLGSYPSTN 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-VKKTSVTEDY 126 L++ARKL AE + + D + K + ++ KK S +ED+ Sbjct: 60 LNEARKLSAELRERIDNGED-------ILAKPDAKKVIYVKDLVAQYIEFQKKNSSSEDF 112 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + I P IG+ I IK + ++P+ +GA T ++ + + A+ Sbjct: 113 IKKLTNISKNHIIPKIGNRDIQTIKRKDCIDVLEPLIDKGA--TRNKVLSALKGISRLAR 170 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA-----SISMSTRCLFMW 241 + LI+ P+ +I +A + + + MP I P L+ + + +R Sbjct: 171 HNELIENDPTHDIARALPQYKAQPMPHISPLHNKSLLKELLLDLDNYTKGNYISRYALKL 230 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + RP E +WD D S IPA MKM +DH V LS A I+E +K L GG Sbjct: 231 LPYIVLRPIELVSLQWDFYDAENSRIIIPAEIMKMRKDHIVCLSRQAKQIIEELKDLQGG 290 Query: 302 REFIFPSRIKPNQ-PMNSQTVNAALKRAGLGG----VLVSHGLRSIASTALNEE----GF 352 ++ FPS K N +N +++ A++ G G HG R I STA++E F Sbjct: 291 FKYFFPSYYKDNHDHINYESLAKAIRSMGYNGIDKPKQTLHGFRHIYSTAIHELQEQYHF 350 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 IE LAH DKN+ R +YN +D L +R +MQ +AD + Sbjct: 351 SELAIELVLAHTDKNKSRASYNFADKLSERAKIMQVYADWIDNLKYAK 398 >UniRef50_B2TTV9 Site-specific recombinase, phage integrase family n=25 Tax=Proteobacteria RepID=B2TTV9_SHIB3 Length = 439 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 104/414 (25%), Positives = 169/414 (40%), Gaps = 20/414 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQ-LYDGDGLTLLIKSS-GSKLWQFRYYRPLTKQRTKQSF 60 RK LTD +I+A ++ DG+GL L + + + W+FRY L + Sbjct: 19 RKMPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFRYK--LAGKSRAMLI 76 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQV-----RNSQEAKTNTFLLVAERWW 115 G+Y +SLS AR+ E +A D +++ + E +A ++ Sbjct: 77 GSYSELSLSKARETAKELSARVALGYDVAGEKQKHKTEALAKMEAEKNAMRVSELAAEYF 136 Query: 116 NVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 ++ + D + R +++DI P IG + + ++K + ++ + RGA + Sbjct: 137 E-RQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLKGIVDRGAPTIATDVL 195 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKK-NMPSIRPDQLPQLMHTMRTASI-SM 233 + + Y ++ P A ++ + D+L QL MRTA S Sbjct: 196 RWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRDELIQLFKAMRTAKGFSR 255 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 F L R E ARW+E D + + W +P R K +PL A+ L Sbjct: 256 QNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERSKNGDPIDIPLPSPAVEWLR 315 Query: 294 MMKPLSGGREFIFPSRIKPNQ---PMNSQTVNAALK--RAGLGGV--LVSHGLRSIASTA 346 + S ++ P+R N+ + T+ AL RA + V H R A T Sbjct: 316 ELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVRAEMPDVPNFTIHDFRRTARTH 375 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 L G P V E L H K V YNR Y ++R+ + WADL+ A +SG Sbjct: 376 LAALGVDPVVAERCLNHRIK-GVEGIYNRHQYFDERKAALAQWADLLVALESGK 428 >UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD60_RHOVA Length = 427 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 98/416 (23%), Positives = 172/416 (41%), Gaps = 17/416 (4%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 TK LT ++ +P + ++ DG GL + + SG+K W RY + Q K + G Sbjct: 2 TKALTVRALENMRPGASRREIPDGIIQGLYFVHQPSGAKSWAVRYR--VGGQTRKLTLGT 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YPA+ L AR L + + +A+ DP + +K + A F+ + + + Sbjct: 60 YPAIGLKPARDLASTALAAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQ 119 Query: 123 TED--YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + R L+R+I P + +I + + + + RG R + + Sbjct: 120 KNKETHIRETERILQREIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRK 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A + I P I + + + + D++ L Sbjct: 180 MCAWAVDRSFIAVSPCHGIKAPASEKSRDRL--LSEDEMRAAWLAFEATGWPFGP--LAK 235 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 L T R E A+ RW EIDF W IPAAR K + H VPLS+ ALAIL+ + ++G Sbjct: 236 LLLATAQRRDEVADMRWSEIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAG 295 Query: 301 GREFIFPSRIKPNQPMNSQTVNAAL----KRAGLG-GVLVSHGLRSIASTALNEEGFPPD 355 +++F + K S+ A ++ G G H LR A++ + PP Sbjct: 296 VSDYVFTTTGKTPVSGFSRAKKAFDEQITRQLGEGIPGWTLHDLRRTAASGMTALKSPPH 355 Query: 356 VIEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 V++A L H V Y R Y ++R + W + S + ++++++ Sbjct: 356 VVDAVLNHKSGTIKGVSAVYMRYGYAAEKRTALDAWGHFLTTIISSNTPCSNMAQL 411 >UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A1U0R6_MARAV Length = 432 Score = 268 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 110/441 (24%), Positives = 181/441 (41%), Gaps = 43/441 (9%) Query: 1 MARKTKPLTDTEIKAA---------KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPL 51 M + K L+ E+K + + Y + GL L I SGS+ W R + Sbjct: 1 MPKIAKELSALEVKRLTCRIDPETGEATEVRYPVGGVSGLLLRITPSGSRQWILRAK--V 58 Query: 52 TKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRN--SQEAKTNTFLL 109 +R G YP +SL+ AR E K + IDP E ++ R +++ T TF Sbjct: 59 GNRRPDMGLGPYPEISLAQARDKAREMKEKIRSGIDPLEEKRTLKRALLAEQISTLTFQK 118 Query: 110 VAERWWNVKKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGAL 168 E++ +K + W SL P +G + + EI + + + P+ Sbjct: 119 AMEKYIKMKAKEFRNPRQEKQWTNSLNTYAIPHLGKLPVREIDLPHIKQVLDPIWET-KT 177 Query: 169 ETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLP 220 ET R+ RI ++ + G A ++ ++ + ++ D +P Sbjct: 178 ETANRVRARIENILGWCAIHGYRSAENPARWQGYLDEVYPSPEKIKKRGHFAALPVDDMP 237 Query: 221 QLMHTMRTASISMSTRCLFMWQLLTITRPAEA--------AEARWDEIDFNASEWKIPAA 272 + M ++ + + + + +LT +R E A W EID W +PA Sbjct: 238 EFMRDLKKRTGTAA--RALEFLILTASRTNEVIGDKRIGKAGVTWQEIDLARKVWTVPAD 295 Query: 273 RMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG 332 RMK + H VPL+D A+ +L+ M S + IFP ++ + A LKR Sbjct: 296 RMKSEKIHRVPLTDSAIELLKGMGEGSP-EDLIFPGP--KGGIPSNNFLTALLKRM--ER 350 Query: 333 VLVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 + +HG RS E + +V E ALAHV+ + R AY RS+ +++RR MM W Sbjct: 351 PITAHGFRSTFKDWARERTAYADEVSELALAHVNSDATRAAYARSELIDKRRLMMADWEQ 410 Query: 392 LV----KAADSGSIVLTHLSK 408 +SG +V K Sbjct: 411 FCMHGETKKESGKVVAIGEGK 431 >UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae RepID=A9HQA6_9RHOB Length = 398 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 106/416 (25%), Positives = 192/416 (46%), Gaps = 31/416 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ------ 54 MA + LT ++ + DG+GL L++ SG++ W R K Sbjct: 1 MA-LSGKLTKKLVENLGAG----RHGDGNGLYLVVDPSGARRWIVRVVVKGQKNKKGAPL 55 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 RT G V+++ AR+ E + + ++P+ + K ++ +E + W Sbjct: 56 RTDFGLGGADIVTINQARERALEYRRMAKTGLNPRFNAKREIPTFEEFAKQVHIDRLPTW 115 Query: 115 WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 N K + +L FP IG + I + ++ + P+ ET +RL Sbjct: 116 KNAK-------HGQQWINTLRDYAFPKIGRMPIDSVNQPEVMMCLAPIW-TAKHETAKRL 167 Query: 175 CQRINEVMIYAQNTGLIDA-VPSVNIGKAFEKPQKK----NMPSIRPDQLPQLMHTMRTA 229 QRI V+ A++ G D P I +A P+ K + ++ +P +R Sbjct: 168 AQRIKTVLDVARSKGFRDGENPVTAIKEAHALPKVKGKVNHHKAMHWRDVPAFYSDLRGR 227 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + + M+ LT +R E +W EID +A W PA RMK DH VPL+D L Sbjct: 228 NAMSAK--ALMFTCLTGSRTGEVLGTQWGEIDLDARVWTCPAIRMKTGEDHRVPLTDEML 285 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +I+E ++ + +++F + K ++P+++ ++ L+R + G + HG RS ++ Sbjct: 286 SIIEPLRAMQ--SDYVFEGQ-KRHRPLSNMSMLMLLRRMQVEG-VTVHGFRSTFRDWASD 341 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 P +V E +L+H+ ++V RAY RSD L++RR +M+ W++ V + + I ++ Sbjct: 342 VANAPREVSEMSLSHLVGSDVERAYARSDLLDRRRALMERWSNYVIGSQTNIIKMS 397 >UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1ATP4_PELPD Length = 449 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 50/448 (11%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFG 61 A K TDT I+ KP ++DY +G+G T+ + SGSK W + Y +R K + G Sbjct: 8 AMKKTTFTDTMIRKLKPTESDYTRSEGNGFTIRVMPSGSKTWLYLY--AFDGKRRKMNLG 65 Query: 62 AYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS 121 +YP V+L AR ++K + +IDP +EQ ++A T + + Sbjct: 66 SYPDVTLETARGRFEDAKRKVKNNIDPMAEAEEQAEERRKAPT--VADLVHDYIERHAKR 123 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 +A D + L R++ PA G ++ +++ ++ + R A Q I ++ Sbjct: 124 FKRSWAKD-EQILNREVVPAWGKRKAADVTKRDILRLLEEIVNRNAPAMANNTFQIIRKM 182 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM--RTASISMSTRCLF 239 +A ++ P + P+ + ++ L + A +S R Sbjct: 183 FNWAVEQDILQHTPCTGVK--LPSPKLSRDRVLSESEIKTLWENLGRPDAGMSDGVRRAL 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 L T RP E E+D W IPA R K + H V LS AL I+ + Sbjct: 241 RLILTTAQRPGEVTGLHTSELD--GCWWTIPAERAKNGKTHRVYLSGLALEIINQAIAQA 298 Query: 300 GGR----------EFIFPSRIKPN-QPMNSQTVNAAL----------------------- 325 ++FP K +PM + A+ Sbjct: 299 KKSRETPYDQEYNGYVFPCHHKSKEKPMGDTALAVAVGRALASPLTDDKGNPLFTAAGKP 358 Query: 326 ---KRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQR 382 R G+ H LR +T + GF +VI+A L H + V + YN+ Y ++ Sbjct: 359 ATENRLGI-DHFTPHDLRRTTATFMASMGFMDEVIDAVLNHAKQ-GVIKVYNQYRYDVEK 416 Query: 383 RPMMQWWADLVKAADSGSIVLTHLSKIR 410 + ++ W + +K +G V+ K + Sbjct: 417 QQALETWENKLKTILAGDKVVDLDQKRK 444 >UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=A4F5J8_9BACT Length = 390 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 115/383 (30%), Positives = 187/383 (48%), Gaps = 18/383 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD IKA KP + Y++ D DGL L + SG+ ++F Y ++ + G Y ++ Sbjct: 3 LTDKAIKALKPGEKTYKVADRDGLYLSVAPSGTMSFRFNYRY--NNRQQTVTLGKYGEIT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ ++K LA I P + ++E E N+F + +++ ++ V + Sbjct: 61 LAQAREKLLKAKADLAAGISPAKKKQEIKNTLAE---NSFSVWLDKY--TEECGVADSTK 115 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 +++ + PA+G +S+ EI + + + + + A T I V +A Sbjct: 116 KMRGYAIDNYLRPALGKMSLFEITENEVRALAEDLVKQQAPSTALLCRMIIKNVYTFASM 175 Query: 188 TG-LIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G P+ + + K ++ P ++ +++ + +S +S++ F LLT+ Sbjct: 176 HGGPKLKSPTDFVRPSSIHTFKSRTRAMSPREIGYVLNGIEQSSSDISSKSAFKLILLTL 235 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL-SGGREFI 305 R +E W EID+N W+IPA RMK R H V LS A IL ++ L + +FI Sbjct: 236 LRKSEVINGVWSEIDWNEKTWRIPAERMKTKRPHNVYLSKQAFDILVCLRTLSTCKSDFI 295 Query: 306 FPSRIKPNQPMNSQTVNAAL-------KRAGLG-GVLVSHGLRSIASTALNEEGFPPDVI 357 FP++ N+PM + T N L K+AG+ H LR AST LNE F D I Sbjct: 296 FPAKYGLNKPMATSTPNRLLELGMANAKKAGIEIEPCTIHDLRRTASTLLNEAEFNSDWI 355 Query: 358 EAALAHVDKNEVRRAYNRSDYLE 380 EA+LAHV + VR YN +DY E Sbjct: 356 EASLAHV-ASGVRAVYNVADYRE 377 >UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ50_PELPD Length = 427 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 99/422 (23%), Positives = 171/422 (40%), Gaps = 38/422 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA T+ TD I + KP D +Y +G G ++ + SG K W F Y K+ + Sbjct: 1 MATGTR-FTDKFIMSLKPADKEYWKREGQGFSIRVYPSGEKAWYFIYTFDGRKKYMRLKD 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+DAR+ +KV L IDP ++ + + T + + + Sbjct: 60 GGYPDVSLADAREAFDIAKVKLKNGIDPLAELEQARLDRK--HTPFVKEFVDEFIRIYCK 117 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +I R+L+ +I P G +T+IK LV + ++ RGA R+ + Sbjct: 118 E-NNRGWKEIERALKSEIVPRWGKRKLTDIKRRDLVLVLDEIKERGAPVMANRILAYTRK 176 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A ++ P + + + ++ ++ + + ++ H + +S S + Sbjct: 177 MFSWALERAALEVNPFLMMSRPNDETSRERV--LSEKEIKTFWHNLDECKMSDSIKRALK 234 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 L+T RP E +EID W+IPAAR K + H V L+ A + + Sbjct: 235 LILVTGQRPGEIIGMHRNEIDGE--WWEIPAARSKNKQAHRVFLTITAKQL------IGD 286 Query: 301 GREFIFPSRI----------KPNQPMNSQTVNAALKRAGLG------------GVLVSHG 338 FIF S KP +P +T+ +K+ H Sbjct: 287 ASGFIFESPANPAKPDETPPKPAKPYEVRTMTHDIKQNLPHTPHSKVIDRLKVPHFTPHD 346 Query: 339 LRSIASTALNEEGFPPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 LR A+T E D+I+ H+ K V YNR Y +++ ++ W + + Sbjct: 347 LRRTAATRWAEMEITGDMIDRLQNHITRQKQGVGHVYNRYSYAREKQQALEAWEQKLNSI 406 Query: 397 DS 398 + Sbjct: 407 IT 408 >UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR9_9PROT Length = 391 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 100/401 (24%), Positives = 175/401 (43%), Gaps = 20/401 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 TD IK+ +P +++ + G + + ++G+K + F Y + Q+ + SFG YP Sbjct: 2 KFTDRSIKSIRPTGKRFEVRETGRTGFAVRVSTTGTKTFVFIYK--INGQKKRLSFGTYP 59 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQ--EHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 A+SL++A L E+K+ L K DP + +K Q+ ++ L ++ V+KTS Sbjct: 60 AMSLNEAHLLYEEAKLELEKGNDPALIKAKKSQLEKNEVTIPELIKLYINQYAKVRKTSW 119 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 ED R L +DI P + EI + + + RGA RL + +V Sbjct: 120 EED-----ERQLNKDILPRWKNRKAIEINKSDVHAVLDTLIERGAPIGANRLLAVLKKVF 174 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 YA+ G + P I + + + + +++ H + ++ ST+ +Q Sbjct: 175 NYAKEKGYVTNNPCDEITPPATETSRDRV--LTANEIKTFWHQLDCTNMHSSTKNALKFQ 232 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 L+T+ R E A ARW++I + W IPA K + H V LS A +L K S Sbjct: 233 LITLQRRKEVALARWNDIHGD--TWVIPAGTAKNKKRHDVHLSQFAKKLLIEAKSYSKDS 290 Query: 303 EFIFPSRIKPN-QPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTALNEEGF-PPDVI 357 F+FPS + + ++ A+KR H LR A+T L + V+ Sbjct: 291 PFLFPSPCGAGSKHIRPDALSKAVKRNMETLMVQDFSPHDLRRTAATFLTKSKIANRLVL 350 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 L H V Y++ +Y +++ + W ++ + Sbjct: 351 SLMLNHSQGKSVTAVYDKYEYFTEQQKAWEAWGVKLEEIIA 391 >UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SXW8_POLSQ Length = 434 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 107/409 (26%), Positives = 181/409 (44%), Gaps = 30/409 (7%) Query: 27 DGDGLTLLIKS---SGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLA 83 + GL + + + + W FRY P +R + G+ A SL+DAR+ E + L+ Sbjct: 27 ESKGLYIQVSKGVNNFKRSWIFRYTSPTLFKRREMGLGSLEARSLADARRKTLELRQLVM 86 Query: 84 KDIDPQEHQKEQVRNSQEAKTN--TFLLVAERWWNVKKTSVTEDYADDIWR-SLERDIFP 140 IDP E + + A N TF AER +K D WR ++ +P Sbjct: 87 DGIDPTEDRCKAKSKRITAINNGITFKEAAERCIEGRKAEWKSSKHADQWRNTISTFAYP 146 Query: 141 AIGDISITEIKAHTLVKAVQPVQARG-----------ALETVRRLCQRINEVMIYAQNTG 189 IG++ + +I + K ++ ET R+ QRI + + + Sbjct: 147 EIGELRVDQINTSHIAKLLEQEIKNKNGTVEGTFWNVRTETATRVRQRIEVIFDWCKAHE 206 Query: 190 LIDAVPSVNIGKAF--------EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 I + A + +K + P++ ++ + + +R + + Sbjct: 207 YIKGDNPARLKGALGHLLPKAKKIQKKSHHPALPFQRIGEFVKDLREHNGYSA--LALEL 264 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +LT TR +E EA+W E + W IPAARMK ++H VPL+ A+ ILE +K +S Sbjct: 265 LILTATRTSEVIEAKWTEFNLETKVWVIPAARMKAGKEHRVPLNTRAMEILEHLKTISVS 324 Query: 302 REFIFP-SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEA 359 ++FP S K +++ + + +++ V HG RS E +P + +E Sbjct: 325 S-YLFPGSLHKEESHLSNMALLSMMRKMPKYSGYVPHGFRSTFRDWAAETTDYPNETVEL 383 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 ALAH KN+ AY R D LE+R +M+ W +V AA + + L+ + K Sbjct: 384 ALAHTIKNKAEAAYRRQDQLEKRTVLMEEWGAIVNAAINKNENLSTMIK 432 >UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GUV7_SPHAL Length = 403 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 114/413 (27%), Positives = 177/413 (42%), Gaps = 30/413 (7%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT +KAA YQ DGDGL L + +G+ W R R +R G+ V Sbjct: 3 KLTAVAVKAALANPGTYQ--DGDGLFLKVGKTGAASWLLRLQR--DGKRQDIGLGSAKLV 58 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDY 126 +L++AR AE + + ++ R +EA TF A ++ + + D Sbjct: 59 TLAEARAKAAELRKAVK----VEKRDVLTERKDEEAAKVTFREAATQYHSENEAGWKSDV 114 Query: 127 ADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 W SLE FP +GD++ I A ++ + P+ ET R++ RI V+ Y+ Sbjct: 115 YGRQWLASLENYAFPKLGDMTTGGITAADIISVLTPIWQE-IPETARQVRNRICAVLDYS 173 Query: 186 QNTGLIDA-----VPSVNIGKAFEKPQKK--NMPSIRPDQLPQLMHTMRTASISMSTRCL 238 G + S+ G+ + KK N ++ +P + +R +R Sbjct: 174 HAKGWRSSEAPSGNSSLKAGRGLPRQIKKPANRKAMPYVAVPPFLTALR--RKPSYSRLA 231 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 +LT R E A+WDE D + W IPA MK +R H VPLS+ ALA+L + Sbjct: 232 LDLLILTGVRSQEVRLAKWDEFDLDQRLWTIPAEHMKRSRAHIVPLSEAALAVLVKADAM 291 Query: 299 S-GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 G E +FP + M++ T+ ++ HG RS + EGFP V+ Sbjct: 292 RLEGAEVVFPGMT--GKAMSNMTLLKVMRDM--QEPFHVHGFRSSFTDWAANEGFPNAVV 347 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQ------RRPMMQWWADLVKAADSGSIVLT 404 EAALAH + V+ AY R+ YL R +M+ W + + + Sbjct: 348 EAALAHKTPDAVQAAYRRTTYLGTPDNPGARVKLMEAWGNYCAGTAGANTPIN 400 >UniRef50_B0QT04 Prophage CP4-57-like integrase n=1 Tax=Haemophilus parasuis 29755 RepID=B0QT04_HAEPR Length = 304 Score = 265 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 114/282 (40%), Positives = 169/282 (59%), Gaps = 2/282 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLT--KQRTKQ 58 MAR TKPLT+TE++ AKPKD DY L DG GL L +K++G K W F YY+P + +RT Sbjct: 1 MARITKPLTNTEVEKAKPKDKDYSLMDGQGLFLRVKANGKKFWLFNYYKPFSTPPKRTNL 60 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 GAYP +SL+ AR +R E + LLAK+IDP+ H++ V + NTF VA++W K Sbjct: 61 GIGAYPEISLAQARLIRDEWRALLAKNIDPKVHRQNIVDEEISKRENTFEAVAKKWREKK 120 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 V + W LE +F IG+++++EI ++KAV+P++ RG +T+ R+ + + Sbjct: 121 SLEVQPKTMEKNWARLENHLFSKIGNVAVSEITPKMVIKAVEPLKERGVGDTLHRVIRLL 180 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 NEV+ +A N GLI+ VN+ F +N P+IRP+ LP+ + + ++ S+ + L Sbjct: 181 NEVLNFAVNMGLIEFNKCVNVSANFSTHTAENNPTIRPELLPEFLSDLDDSNSSIQVKIL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDH 280 WQLLT+ RP EA W EIDF W IPA + + + Sbjct: 241 IKWQLLTMVRPREAVSVEWQEIDFAKKTWTIPAPKNERRQTF 282 >UniRef50_B5J7B6 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=B5J7B6_9RHOB Length = 446 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 109/431 (25%), Positives = 177/431 (41%), Gaps = 44/431 (10%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFG 61 R K L+ ++ + Y G GL L ++ SGS+ W R ++ +R + G Sbjct: 22 PRIGKSLSAAFVRTVRDPGK-YHDGGGLGLMLRVEPSGSRRWVQRIV--ISGRRREIGLG 78 Query: 62 AYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS 121 P V+L+ AR+ ++ + DP ++ TF AE K + Sbjct: 79 TPPVVTLAAAREAALDNMRTVQAGNDPVAIRRNARTFL------TFATAAEHAIAAKSSE 132 Query: 122 VTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 D WRS L+ P +G + + ++ +++ ++P+ ET RL RI Sbjct: 133 FRSDKHRKQWRSTLDTYALPILGALPVGKVNTADVLRVLEPIWTE-KTETASRLRGRIEA 191 Query: 181 VMIYAQNTGLIDAVPSVNIGKAF----EKPQKK----NMPSIRPDQLPQLMHTMRTASIS 232 ++ +A G + + KPQ+ + P++ + +R Sbjct: 192 ILSWATAAGHREGENAARWKGNLSEMLPKPQRVAKTVHHPALASSDVSVWYAALRGRDG- 250 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 + LT R E W E+D W +PA RMK +R+H VPLS A ++L Sbjct: 251 -VAARALEFLALTAARSGEVRGMTWAEVDLTTGVWTVPADRMKASREHRVPLSAPAFSLL 309 Query: 293 EMMKPLSGGRE-----FIFPSRIKPNQPMNSQTVNAALKRA-------GLGGVL------ 334 E M +F + ++ +++A ++R G G L Sbjct: 310 ESMAVAPDADPTDCGRPVFSAPR--GGVLSDMSLSAVMRRMQQAEIDVGCAGWLDRASGR 367 Query: 335 --VSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADL 392 V HGLRS E G+P D+ E ALAH + V RAY RSD LE+RR MM W+D Sbjct: 368 PAVPHGLRSTFRDWTAECGYPRDMAEMALAHDVGSAVERAYRRSDMLERRRAMMAAWSDF 427 Query: 393 VKA-ADSGSIV 402 + ++G +V Sbjct: 428 LDGRVETGDVV 438 >UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V760_9PROT Length = 384 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 105/396 (26%), Positives = 175/396 (44%), Gaps = 20/396 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LT IK AKP++ Y +YD GL + I G+K ++F+ L + G + Sbjct: 4 LTTVAIKNAKPEEKPYLIYDSKERGLHVHISVVGTKTFRFKTK--LDGKAKIIKLGDFKH 61 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 ++L AR+ + V + IDP + + E W + E Sbjct: 62 MTLEQARQRAFDLNVQIQNGIDPTVQIVPEFKTFAEVSKEFVA------WKRDEFGRAEG 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 L+ D+ PA + SI EI V ++ + AR + + + +N V+++A Sbjct: 116 TIRKYQECLDNDLLPAFANTSIKEIHTKESVAVIEKINAR-SNSLAIKNIEMLNMVVMFA 174 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 G D+ +N+ ++ K P I P L + + RC Q Sbjct: 175 IQRGYRDSYTQLNLSGLIKEKPVK--PKIMPSSLKDTFDKIDQYP-TFIMRCAITIQFHV 231 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R +E RW+EIDF +W +PA RMKM R H VPL+ + +L +K +G F+ Sbjct: 232 FLRGSEIMGGRWEEIDFEKKQWVVPADRMKMKRTHIVPLTSQTIELLTKLKSATGDSAFL 291 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FPS K + + ++ A + A L +V HG R++A T + + P ++E L+H + Sbjct: 292 FPS-SKSVEHIGRDALSKAFRAADLK--IVPHGCRTLAGTWMRNNKYLPHLVETQLSHCE 348 Query: 366 KNEVRRAYN---RSDYLEQRRPMMQWWADLVKAADS 398 N++ AY YL++RR MMQ W++ + + Sbjct: 349 SNQIAAAYQTEPHMLYLDERRGMMQEWSNHLSESAK 384 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 96/412 (23%), Positives = 168/412 (40%), Gaps = 30/412 (7%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 + D +IK+ + GDGL + +++ G W+ RY ++ + G YP Sbjct: 8 LNYMNDKQIKSFLKSKELGRKAVGDGLYIRVQTEGVAYWEVRYSVNGKRRSMVPNGGVYP 67 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 A+SL +A+ A+ K+L + IDP ++ Q + + + F + W+ + Sbjct: 68 AMSLVEAKAEAAKVKLLAKQGIDPLAERERQQEITIKTVNDLF----DDWYQCTAPRLK- 122 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + R +DI PAIG + +T++ A + + V + ++ + Sbjct: 123 -HPEIPMRMYTKDIKPAIGQLKVTDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNH 181 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTAS--ISMSTRCLFMW 241 A + P+ A +KN + +++ +R + S Sbjct: 182 ACKLDVASGNPAAAFNTADAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVAL 241 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L R E A+W E DF+ W++P R K T+PLS+ + L+ +K ++ G Sbjct: 242 LLCLGVRKGELIAAKWSEFDFDQQVWRMPKERSKTGVGITIPLSEFVIEWLKELKIIACG 301 Query: 302 REFIFPSRI--KPNQPMNSQTVNAALKR----------------AGLGGV--LVSHGLRS 341 E++FP+R K + + + T+N AL + G GV H LR Sbjct: 302 SEYVFPARKASKRREYIANDTLNHALAKLFGQKHDSNKQPFENLLGKAGVEHFTVHDLRR 361 Query: 342 IASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 T L PP + E L H K + YN DYLE+RR + A L+ Sbjct: 362 TCRTLLASLKVPPHIAERCLNHKLK-GIEGTYNHHDYLEERREALDKLAALI 412 >UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepID=Q21D10_RHOPB Length = 429 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 187/437 (42%), Gaps = 42/437 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR LT ++ DG GL L I GSK W FRY L + Sbjct: 1 MARGFGKLTVKTVEHL---SRRGMHADGGGLYLQIAEGGSKSWLFRYK--LHGRTHWHGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERWWNVK 118 G+ V L +AR+ ++ + DP + +++ ++ TF A+R+ Sbjct: 56 GSLRDVGLEEAREKATGARKVRRNGGDPIQAKRQAEAAARIEAAKAITFGEAAKRFIKAN 115 Query: 119 KTSVTEDYADDIW-----------RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 + D W + + D I D+ I I +++ ++P+ A Sbjct: 116 RAGWKNAKHADQWVMTLLGVDQKGKPSKNDYCKTIRDLPIGAIDTTLVLRIIEPIWA-SK 174 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQL 219 ET R+ RI +V+ A+ G + + + +N P++ QL Sbjct: 175 TETATRIRSRIEQVIDAAKAKGEFNGENPARWKGHLDNLLPATSKVRKVRNHPALPYRQL 234 Query: 220 PQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD 279 P M +R + + +Q+LT RP A A+WD+ID S W IPAA MK + + Sbjct: 235 PDFMRKLRERDGAAA--AALEFQILTAVRPGNAVAAKWDQIDRQTSVWTIPAALMKSDAE 292 Query: 280 HTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA----------G 329 H VPLS ALA+L+ M+ E+IFP+ +P++ ++ A + R Sbjct: 293 HRVPLSKAALAVLDRMEATKDDSEYIFPNT--KGKPLSDASMAAVIDRMNELERRWIDPK 350 Query: 330 LGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWW 389 L +V HG RS E G+ V EAALAH +EV AY R+ +L+ R MM+ W Sbjct: 351 LDREIVPHGFRSSFRDWAAEHGYDDPVAEAALAHKVSDEVVAAYRRTTFLDLRNRMMEDW 410 Query: 390 ADLV-KAADSGSIVLTH 405 AD + + SG V+ Sbjct: 411 ADYCARPSSSGDTVVAF 427 >UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas putida RepID=B0KFC6_PSEPG Length = 436 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 94/409 (22%), Positives = 183/409 (44%), Gaps = 19/409 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIK------SSGSKLWQFRYYRPLTKQRTKQSF 60 L+D I++ Y D GL L ++ S S+ W+ +Y L + Sbjct: 26 KLSDAFIRSLTTSGK-YADGDVPGLYLQVRASLKPGKSPSRHWRLKYR--LRGKENVYVI 82 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V L +AR+L ++ +A IDP + +K ++ + TF VAE W K Sbjct: 83 GRYPDVGLKEARELARAARNSVANHIDPLKAKKAKIEAQWLNEARTFAYVAEEWMKFKSA 142 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + +L+ I PAIG+ ++EIK + + ++ + + RR+ I Sbjct: 143 DLVSKSVAGFRGALQNHILPAIGERPVSEIKLEHITAIITELRYKRIMAMARRVRTIIRS 202 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCL 238 ++ +A+ G ++ +++ + + + + P+I RP L + + + ++ S Sbjct: 203 ILGFAEGRGWVERNVALSNTEELKIRHVVTSNPAIERPADLGKFLLRLDDLNLG-SVAYA 261 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM--NRDHTVPLSDGALAILEMMK 296 +L RP E + RW+++D ++W+ ++ K H VPL + AL +L + Sbjct: 262 MRLLVLLPVRPGELVKMRWEDVDLIGADWRYVVSKTKHLDKSKHIVPLPEQALVLLRELH 321 Query: 297 PLS----GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-G 351 G ++F S + P + +++ ++ +L++ + +HG R+ T +E G Sbjct: 322 KDRVVDDAGNGWVFGSPVYPGRSIDATSILKSLQKVWPEYAITAHGFRATYRTIAHEHLG 381 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 P V+E +L+H + Y R+ L QRR Q WA+ + + + Sbjct: 382 IDPIVLELSLSHRMPGALGAVYARAQLLSQRREAAQLWANYLDQLRNNT 430 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 98/422 (23%), Positives = 173/422 (40%), Gaps = 36/422 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M KPLT I+A K + ++ DG GL L+++++G K W RY + K Sbjct: 1 MP-AAKPLTVKSIEAIKAGSSRREIPDGALQGLYLIVQTTGVKSWAVRYRHA--GKPRKM 57 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 + G +PA+SLSDAR+ ++ ++++ DP + EQ L+ E Sbjct: 58 TLGGFPAISLSDAREEARKALRMVSEGRDPATEKAEQEPKRPAHMDLMPALLDEFVTRHV 117 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 Y + R +E+++ P + + ++K + + RG+ R+ + Sbjct: 118 AVKNRPSYVRESKRIVEKNLKPKWKQKLVKTVTKRDVLKLLDEIVDRGSPIMANRVRALL 177 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 ++ +A ++DA P V+I E+ + + + + L + Sbjct: 178 SKFFAWAMERDIVDASPVVSIKAPSEEKTRDRILTDEEIRFLWLAAEKLAYPFGPVVK-- 235 Query: 239 FMWQLLTITRPAEAAEARWDEIDFN--ASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 LLT R E ++A WDE++ W I R K ++H VPL+ AL I+E + Sbjct: 236 --LLLLTAQRRTEVSDALWDELELEGNNQLWVISVDRAKNKKEHFVPLTASALEIIEGLP 293 Query: 297 PLSGGRE------FIFPSRIKP--------NQPMNSQTVNAALKRAGLGGV--------- 333 + + ++F + K ++ + + A K A G Sbjct: 294 KIKPAEDEKAKPIYLFTTTGKTPVSGFSKAKTQLDGEMLAIARKEAEERGEDPEGISIEP 353 Query: 334 LVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN--EVRRAYNRSDYLEQRRPMMQWWAD 391 H LR A++ + P ++EA L H + V YNR DY E++R + WAD Sbjct: 354 WTYHDLRRTAASGMARLSVPVHIVEAVLNHRSGSIKGVAAVYNRYDYAEEKRAALTAWAD 413 Query: 392 LV 393 V Sbjct: 414 EV 415 >UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium meliloti RepID=Q92LG2_RHIME Length = 409 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 106/414 (25%), Positives = 171/414 (41%), Gaps = 30/414 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M LTD +++ K DG L L ++ +GSK + + + K++ + + Sbjct: 1 MP--INKLTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKAT--IDKKQREWTI 53 Query: 61 GAY----PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNT----FLLVAE 112 G+Y SL++ARK R E ++ + K ++ + T F + Sbjct: 54 GSYGSEEHHFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSI 113 Query: 113 RWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 + WRS +I + + I ++ ++P+ + A ET Sbjct: 114 ELIQQIEGGFRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDVLAILRPIWSTKA-ETAS 172 Query: 173 RLCQRINEVMIYAQNTGLIDA-VPSVNIGK------AFEKPQKKNMPSIRPDQLPQLMHT 225 R+ RI V+ A+ G P+ G +K Q+ + P++ LP L Sbjct: 173 RVRGRIERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQK 232 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 + SI + +LT R E A+W+E D W IPA+RMK R+H VPLS Sbjct: 233 L--TSIDTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLS 290 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST 345 D + IL+ M+ + +F+FP + P++ T++ L GL HG RS Sbjct: 291 DSCIEILKRMQKIR-HSDFVFPGTR-EHAPLSDMTLSKVLH--GLCKGYTVHGFRSTFRD 346 Query: 346 ALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 E F + EA LAH + V RAY R + LE RR +M W + S Sbjct: 347 WCGEKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFILTGRS 400 >UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SVD2_ACILW Length = 388 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 106/396 (26%), Positives = 177/396 (44%), Gaps = 17/396 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 +K L DT + A + + DY+L+D L +K++GSK WQFRY + K K GA Sbjct: 7 KKKGYLADTVLTALEVEMQDYRLWDSPNLYFFVKANGSKSWQFRYKKRNGKWGWK-GVGA 65 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YP + +AR + + + E + E + K+ Sbjct: 66 YPIIKAKEARVIASGYLKEIEAG------------TFLEVDKYKLSSLIESLLDKKQKKW 113 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQ-ARGALETVRRLCQRINEV 181 + + S+++ I+P G+ + IK + ++ +R+L E Sbjct: 114 SPKNFSKMQLSIKKHIYPEFGNRDLRTIKTMEWYEFFARLEYDLKIPVQMRKLLSFAREA 173 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 +A P + FE+ + N + +LP L+ +R+ S S ST Sbjct: 174 YDWACIYCEYKENPVREVQGFFERHKSGNFKFVDLIELPDLLSAIRSYS-SRSTAIGLEL 232 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LL RP E +A+W++ DF+ W PA MK ++H VPL D A+ +L+ +K + Sbjct: 233 LLLLFPRPGELQQAKWEQFDFHRKIWIKPAEMMKNKKEHRVPLPDQAIILLKRLKEIQTP 292 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAA 360 ++FP R P M+ T N AL G HG R +AST LN + +IE+A Sbjct: 293 SPYLFPLRNDPMMAMSVDTFNEALISLGYENKQHPHGFRHLASTTLNNKFSDKYQIIESA 352 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 L+HV + + Y+++++ ++R +MQ WAD V + Sbjct: 353 LSHVKQ-GTKGIYDKAEHFQERVDLMQGWADYVYSL 387 >UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2Y2_9BACT Length = 406 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 119/422 (28%), Positives = 190/422 (45%), Gaps = 36/422 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T I A K+ DY L+DGDGL L I + G K W R + + K G YP +S Sbjct: 2 LTNTAIAKAAAKEKDYMLFDGDGLYLRISTKGKKKWLIR--SFVGGRERKVVIGEYPVMS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR+ R + K+ + S KT TF V RW K+ +V+ D+ Sbjct: 60 LQEARRERDDRKMKARTGV------------SIRNKTVTFGDVFARWLKKKEKAVSPDHY 107 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I R +E + P + + + +I L++ +Q RG ++T RR ++ A + Sbjct: 108 KIIKRRIEMYLLPYLANRPVADISRPELLEVLQHPIERGLIDTARRTGALARSILDAAAD 167 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNM-PSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G + + ++ ++ + + +N + P ++ +L+ + R T Sbjct: 168 KGEVALNIAADLSRSLPEWEVRNFKSAFDPREVRRLLLAIDCYP-RQIVRYALRMVSYTF 226 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS----GGR 302 R +E A W EI + EW IP K R VPLS AL IL+ M+ ++ G+ Sbjct: 227 VRRSELRRATWAEIHED--EWHIPVVHAKKKRIQIVPLSRQALEILDAMRRIAQIRWKGQ 284 Query: 303 EF----IFPSRIK--PNQP-MNSQTVNAALKRA-------GLGGVLVSHGLRSIASTALN 348 F IFPS P M + ALK ++ HG R +AST L+ Sbjct: 285 PFEDKPIFPSTRNTPSGSPYMGISAMEVALKWLVAHVPAPDTPPLIDLHGFRHMASTLLH 344 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 E + + IE L+H+ +++ Y++S L RR MMQWWAD + A G + L + Sbjct: 345 EHHWDHEAIERQLSHLKRDKTEATYDKSKLLPLRRRMMQWWADYLDAVKEGRVDLEDVEF 404 Query: 409 IR 410 ++ Sbjct: 405 VK 406 >UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JEM3_OLICO Length = 390 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 114/407 (28%), Positives = 175/407 (42%), Gaps = 31/407 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR L++T+IKA DGDGL + ++ +GS+ W F Y R +QR + Sbjct: 1 MAR--NKLSETKIKAI---SKPGIYGDGDGLFIRVQKTGSRNWLFVYRR--GQQRNEIGL 53 Query: 61 GAYPA----VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 G Y VSL AR+ + LA+ DP+ + + F V E+ Sbjct: 54 GGYGQGTAPVSLPLAREKADAIRQQLARGEDPRASRNAIKPKT-------FGEVMEQLLT 106 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 K++ T + W+ R + + + +I + + P A ET RL Sbjct: 107 AKESEWTNPKHAEQWKMTLRTYAKPLHRLPVADIVMGDVKDCILPHWAE-RPETAARLRS 165 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKP-------QKKNMPSIRPDQLPQLMHTMRTA 229 RI V+ YA A G EK + + ++ PQ + +R + Sbjct: 166 RIQAVIDYAIAHEWRSAGNPARWGGLLEKVMPKRQKLSRGHHAALAYADAPQTIEALRHS 225 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 S + + + LT+ R EA + + E+D A W +PA RMK ++H VPL+ AL Sbjct: 226 SGTAA--RAVEFIALTVARSGEARYSTFAEVDVKAKTWTVPAERMKAGKEHIVPLTARAL 283 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 I+E M+ + G ++IF +P++ + AL+ A HGLRS + Sbjct: 284 QIVEAMRQRATG-DYIFGGAQDS-KPISDTAMVKALRLASPDKAATLHGLRSTFRDWAGD 341 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 FP D+ E ALAH +E RAY RS L QRR +M W + Sbjct: 342 KTKFPRDIAEMALAHAVGDETERAYRRSTALAQRRKLMDAWERYLNT 388 >UniRef50_Q7MPT5 Site-specific recombinase, phage integrase family n=14 Tax=Gammaproteobacteria RepID=Q7MPT5_VIBVY Length = 434 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 93/409 (22%), Positives = 155/409 (37%), Gaps = 32/409 (7%) Query: 7 PLTDTE-IKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LT + I +K Y DG+GL ++ GS W RY K R + + G +P Sbjct: 21 KLTAKQVIAYSKADPKKY--SDGEGLYFCVRKQGSPYWMIRYT--TAKGRREATLGQFPL 76 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL+DAR A + + IDP +++ E F W S Sbjct: 77 MSLADARIAAAYFRKEVRDGIDPLLEKQKIELPDIETVDQLFHD-----WYRTDLSRRLK 131 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + +R +DI P IG I E+ A + + ++ ++ + ++ +A Sbjct: 132 HPKIPYRVYTKDISPVIGIKCIAEVTARDVREVLERIRESNRPTIANDTLMYMKQLFRHA 191 Query: 186 QNTGLIDAVPSVNI----GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 L P+ E + + + + HT + + ++ Sbjct: 192 IKLDLTLNNPAAAFTVDDAGGVESSKDRMLSKEEIHYAFSVFHTHINSFGRDNYLACCLF 251 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +L R +E EA W E+D W +P R K ++PL A+A ++ + G Sbjct: 252 LVL-GVRKSELCEAMWREMDLTTGVWDLPKERSKTGVPISIPLPRQAIAWFNELQIRACG 310 Query: 302 REFIFPSRIKPNQP-MNSQTVNAAL---------------KRAGLGGVLVSHGLRSIAST 345 ++FP+R ++P M T+N A+ + G H LR + Sbjct: 311 SPYVFPARRASHRPHMGPDTLNRAISKLFGREPGRKKQPPNKMGKLEHFTVHDLRRTFRS 370 Query: 346 ALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 G +V E L H K V Y+R DY E+RR Q AD+V+ Sbjct: 371 LAASLGIAGNVAERCLNHKLK-GVEGIYDRHDYFEERRIAHQTVADVVE 418 >UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobiales RepID=A6U968_SINMW Length = 391 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 121/404 (29%), Positives = 185/404 (45%), Gaps = 25/404 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR LT TEIK + PK L DGDGL L SSG++ + F Y R ++ Sbjct: 1 MAR--NLLTVTEIKNS-PKPK---LRDGDGLWLHTSSSGNRHFVFIYIRHGRRREMGLGT 54 Query: 61 GAYP--AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 VSL+ AR E + +L + DP E ++ K TF A+ + Sbjct: 55 YGTGTGQVSLAAARTKAEEIRTILGRGGDPFT---EMGERQEKVKPTTFGQCADDLVDAM 111 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 ++ + WR + AI + + E+ +V+ ++P+ + A ET RL RI Sbjct: 112 ESQWRNEKHRAQWRMTLTEYAKAIRKLPVAEVTTDDVVRVLKPIWSTKA-ETASRLRGRI 170 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFE-------KPQKKNMPSIRPDQLPQLMHTMRTASI 231 +V+ +A+ GL + K ++ + ++ +P + +R AS Sbjct: 171 EKVLDHAKVRGLRTGENPARWKGHLDHILPKAGKLKRGHHAAMPYADVPAFIKKIREASG 230 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 + +LT +R E A+W E DF + W +PA RMK R+H VPL+D LA+ Sbjct: 231 --VGARALEFTILTASRTGETMGAKWAEFDFRENVWTVPAERMKGGREHRVPLTDRVLAV 288 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN-EE 350 L MK S +F+FP K N P+++ T+ +K HG RS + E Sbjct: 289 LTEMKKRSVN-DFVFPG-SKANTPISNMTMTKVMKTYE-ADAFTVHGFRSAFRDWASEET 345 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 F +V EAALAH+ +E RAY R D LE+RR +M+ W + Sbjct: 346 EFQGEVAEAALAHITGDETERAYRRGDVLEKRRKLMEAWETYCE 389 >UniRef50_B5J8B6 Site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=B5J8B6_9RHOB Length = 436 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 107/414 (25%), Positives = 184/414 (44%), Gaps = 32/414 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ------ 54 MA + LT ++ L L++ SG++ W R K Sbjct: 40 MA-LSGKLTKKLVENLGAGRHGDGGG----LYLVVDPSGARRWIVRVVVKGQKNKKGAPL 94 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 RT G V+++ AR E + + + ++P+ + + + +E + W Sbjct: 95 RTDFGLGGADIVTINQARDRALEYRRMAKQGLNPRFNAQRDIPTFEEFAQQVHIERMPTW 154 Query: 115 WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 N K + +L FP IG + + I ++ + P+ ET RRL Sbjct: 155 KNAK-------HGQQWINTLRDYAFPKIGRMPVDSIDQPEVMMCLSPIWTE-KHETARRL 206 Query: 175 CQRINEVMIYAQNTGLIDA-VPSVNIGKAFEKPQKK----NMPSIRPDQLPQLMHTMRTA 229 QRI V+ A++ G P I A P+ K + ++ +P ++T Sbjct: 207 AQRIKTVLDVARSKGFRSGENPVTAIKDAQALPKVKTKPKHHKAMHWRDVPAFYTDLKTR 266 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + + + LT +R +E RW+EIDF+A W P RMK H VPL+D L Sbjct: 267 NAMSAN--ALRFTCLTGSRTSEVLGMRWEEIDFDARLWTCPIERMKTGEVHRVPLTDEML 324 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +I+E +K L +++F + K ++P+++ ++ L+R + G + HG RS +E Sbjct: 325 SIIEPLKALK--SDYVFEGQ-KRHKPLSNMSMLMLLRRMDVEG-VTVHGFRSTFRDWASE 380 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 P ++ E +L+H ++V RAY RSD +E+RR +M+ W+ V A +SG IV Sbjct: 381 VASAPREIAEMSLSHRVGSDVERAYARSDLIEKRRALMKRWSMYV-AGESGQIV 433 >UniRef50_B9KC61 Site-specific recombinase, phage integrase family n=5 Tax=Campylobacter RepID=B9KC61_CAMLR Length = 392 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 114/409 (27%), Positives = 192/409 (46%), Gaps = 33/409 (8%) Query: 1 MARKTKPLTDTEIKAAKP--KDADYQLYD--GDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 MA+ LTD+ +K+ K + D GL + + SG KL++ R T Sbjct: 1 MAK-INKLTDSFLKSVKCDNGKKFIKFSDPSIKGLYVFVYPSGRKLFKTRQAND-----T 54 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 + G YP +SL++ R++ S L AK +N AK F ++ + Sbjct: 55 YITLGEYPLLSLAELREIAINSHKLKAKG-----------QNISNAKRLKFGVLYDEVLE 103 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + S S + IF ++ +I +IK +V ++ ++ + A T+++ Sbjct: 104 NARKSNLAAKTIQRGLSYKEGIFKSLEYKNINDIKRVDIVNILKTIEHKSA--TLQKAKI 161 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGK--AFEKP-QKKNMPSIRPD-QLPQLMHTMRTASIS 232 IN+V YA +I+ P +I F+KP Q + P++ + + + ++T+ + I Sbjct: 162 WINKVFEYALQLEIIENNPVASIKNNIVFKKPNQVIHQPTLLDESDIKEYINTLIHSDIK 221 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 S + L ++ LLT RP +A WDEIDF W I A +MKM ++H + LS A++IL Sbjct: 222 QSHKNLMLFVLLTAQRPGNVIKATWDEIDFKNEIWTISAQKMKMRKEHNIALSKQAISIL 281 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN---- 348 + + +++F K + T N KR G G+ +HG R++ + N Sbjct: 282 KNQYAIKVN-DYVFAGSSKKGCNSENITCNTN-KRLGYKGIQSAHGFRAMFRSIANEKQL 339 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 E G D+ E LAH KN + +AYNRS +E +R +MQWW D ++ Sbjct: 340 EHGVSMDIAEQCLAHEQKNAILKAYNRSKNIELKRILMQWWGDYIEKLA 388 >UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7I5J5_THIIN Length = 401 Score = 258 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 113/404 (27%), Positives = 177/404 (43%), Gaps = 28/404 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ LT E++ D +++ GL L ++ GS LW FRY + + ++QS Sbjct: 1 MAK--GQLTAQEVRKWSKVDGLHRVA--TGLYLRVR-GGSALWTFRYM--VAGKASEQSL 53 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G A++L+DA AE + + + D ++TF VA + W K Sbjct: 54 GPISALTLADALAKAAEVRAKIRRGED---FALRPSATVVPTPSDTFEEVALQLWESMKP 110 Query: 121 SVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 D W +L FP G +++EI ++ A+ P+ ET RL QRI Sbjct: 111 GWKNPKHADQWINTLRMYAFPRFGRKAVSEIGTEEVLAALTPIWQT-KHETATRLRQRIE 169 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAF--------EKPQKKNMPSIRPDQLPQLMHTMRTASI 231 V+ A+ GL +K + K+ ++ ++P M +R + Sbjct: 170 AVLSAAKARGLRAGENPAAWRGHLNALLPTISKKRRVKHFEAMDWREVPAFMAQLRQRAN 229 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 + + +LT R W EID W IPA RMK +H VPLS A+ + Sbjct: 230 MSA--WALQFTILTALRTGTVIGTPWSEIDLERRLWVIPAERMKAQVEHRVPLSRQAVEL 287 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-E 350 L+ + P G +++F KP +++ + L+ G+ L HG RS S E Sbjct: 288 LQAL-PRQEGSDWVFWGARKPT--ISNMAMLELLR--GMRPGLTVHGFRSSFSDWAAEST 342 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 FP +E ALAH+ N+V AY R D +E+RR +MQ W D + Sbjct: 343 HFPSQTVEMALAHMITNQVEAAYRRGDLIEKRRELMQAWGDYLD 386 >UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UFB2_9BURK Length = 431 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 103/399 (25%), Positives = 183/399 (45%), Gaps = 13/399 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R+ PLT+++++A +P+ A Y + DG+GL + + ++G+K+W+FRY K++ + Sbjct: 29 MPRQAVPLTESQVRALEPRAARYSVADGNGLVIEVMTTGTKVWRFRYSLN-GKRQPLATI 87 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G Y +SL AR + L+A+ I P + EAK + AE + + Sbjct: 88 GDYRMISLRVARAKAQKYAELVAQGISPVATARRD--RGAEAKADVLREAAELYMATEMA 145 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +++Y R+L++D+ PAIG + + + A +V +++RG+ + I Sbjct: 146 GKSDEYRRTTRRALDKDVLPAIGGLPVKSVTAQHVVAICDSIKSRGSPKMALHTRNVIKR 205 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + Y L A P+ + + + D++ +H + T+SI + Sbjct: 206 LYEYLIARQLATANPAQVVPARSIATFESRTRVLSGDEIGATLHAIDTSSIRRPLKIALH 265 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +LT+ R ++ E+ W+E D + W+IPAAR+K + D V L A+ +L + Sbjct: 266 LLVLTMVRKSDLVESTWEEFDLEKASWRIPAARLKQDADQLVYLPQQAVTLLRELHRARA 325 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEA 359 F+FPS ++P+ T+N A+K GL V H R AS L E + Sbjct: 326 ATRFVFPSVRGDDRPIAKSTLNQAVKALGLDVEHFVLHDFRRTASVHLRE------MARH 379 Query: 360 ALAHVDKNEVRRAYNR---SDYLEQRRPMMQWWADLVKA 395 A + R+ + + R + Q WAD V A Sbjct: 380 AQEDKSSAQTRQHARHVEAASAAAEARQIAQRWADFVDA 418 >UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KUI7_METC4 Length = 414 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 93/415 (22%), Positives = 156/415 (37%), Gaps = 21/415 (5%) Query: 8 LTDTEIKAAKP-KDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 LT ++ AKP ++ D GL L+++ +G K W RY + K + G YP Sbjct: 4 LTARAVELAKPDPGKRREVPDAALPGLYLVVQPAGGKSWAVRYR--AAGKPRKLTLGPYP 61 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 + L+DAR+ + +A+ DP ++ +T F VA + + Sbjct: 62 RLGLADAREAARTALHAVAEGRDPAGEKQAARVEVAAVQTMRFGAVAADYIE-RYAKPRN 120 Query: 125 DYADDIWRSLER--DIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + L R D + + I + A+ V ARGA RL + Sbjct: 121 RSWRETESFLTRTLDATDKWQEKDVRAIGRKDVRDALDAVVARGASIHANRLFAALRRFF 180 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 + G++DA P + P+ + +L + + + Sbjct: 181 AWTVERGILDASPMAGLKP--PSPEISRDRVLTDAELVAVWKA--AGEVGYPFGPVVQLL 236 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT R +E EA W E D + + W IP R K +R H VPL+ A+ IL + + Sbjct: 237 ILTGQRRSEVVEAEWREFDLDGATWTIPRERAKNDRAHVVPLAPQAVKILRCIPCVGTRS 296 Query: 303 EFIFPSRIKPNQPMNSQTVNAA--LKRAGLG-----GVLVSHGLRSIASTALNEEGFPPD 355 +F + + S+ + L L H LR ++ G Sbjct: 297 RLLFTTTGETAFSGVSKATDRLQGLSAKHLPEGIEVEPWRLHDLRRTFASGCARLGVAVH 356 Query: 356 VIEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 V+E AL HV + + Y R Y ++RR M+ WA + G+ + L + Sbjct: 357 VVEKALNHVSGTHSGIVGVYQRHSYGDERRCAMELWAAHLDGLVGGAAKVVKLER 411 >UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UGI0_METS4 Length = 413 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 100/413 (24%), Positives = 161/413 (38%), Gaps = 30/413 (7%) Query: 8 LTDTEIKAAKP-KDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 LT ++ KP + ++ D GL L+++ SG K W RY + +Q K + G YP Sbjct: 2 LTVQSVERYKPNPERRLEIPDATLPGLYLIVQPSGKKSWAIRYR--INRQPRKFTIGPYP 59 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 LS AR+ ++ + A+ +DP +K + EAK +VA K Sbjct: 60 LFDLSAARERARQALQMAARGLDPYREKKAAEAAAIEAKDQVSRVVATYVERHLKVKGKP 119 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 YA+ L + P G I +I ++ V + RG R+ + + Sbjct: 120 GYAEQAEGLLRNHVLPHWGHRRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNF 179 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 A LI + P + + P + + S + L I + LL Sbjct: 180 ALGRDLITSTPFLGLKPPLPNPSRDRVLSDAEVRWAWLCAE----RIGFPFGPMVQLLLL 235 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T TR E E W E+D + W IP AR K + +H VPL A+ IL + ++G + Sbjct: 236 TGTRRNETGEMVWSELD--GTVWTIPGARTKNSLEHVVPLPPAAIEILAAVPRIAGRPGY 293 Query: 305 IFPSRIKP--------NQPMNSQTVNAALKRAGLGG---------VLVSHGLRSIASTAL 347 +F + + + + A A G H LR A++ + Sbjct: 294 VFTRNGSTPASDLSAGKRRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAASGM 353 Query: 348 NEEGFPPDVIEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 G P V+EA L H + V YNR YL ++R ++ W V + + Sbjct: 354 ARLGTDPHVVEAVLNHRSGTISGVAAVYNRYAYLNEKRAALETWGKHVTSLAN 406 >UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4A7S2_9GAMM Length = 412 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 115/414 (27%), Positives = 184/414 (44%), Gaps = 30/414 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M K+ LT + + + D +GL LL+ GSK W +RY +R + Sbjct: 1 MGGKSVALTPADCDRITRRG---RHLDAEGLYLLVARGGSKNWIYRYQHE--GRRRELGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRN----------SQEAKTNTFLLV 110 G YPAVSL+ AR R ++ + DP E + Q +E TFL V Sbjct: 56 GGYPAVSLAKARMRRDAARDQRQQGHDPLEVRDRQRAQLRAQMAAETAERERAAMTFLRV 115 Query: 111 AERWWNVKKTSVTEDYADDIWR-SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALE 169 A+ + + T WR +L+ FP +G + + E+ +++ + P+ E Sbjct: 116 ADEFIDNNAAGWTNRKHGQQWRNTLKTYAFPILGVVPVGEVTTDQVLQVLTPIWTE-KTE 174 Query: 170 TVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQ 221 T +RL RI V+ YA G + + + ++ ++ + P+ Sbjct: 175 TAKRLQGRIERVLDYATTKGHREGDNPARWRGHLDNVLPRPGKVHRVEHQRALPYLEAPE 234 Query: 222 LMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHT 281 L + + L T T +E EA W EID + EW+IPA RMK ++H Sbjct: 235 LAAKLTDVDTAAGRALLLTLLCATRT--SETLEATWSEIDLDRKEWRIPAVRMKAGKEHR 292 Query: 282 VPLSDGALAILEMMKPLSGGR-EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR 340 +PL D A+A+L+ G R +++FP + K + +++ + LKR HGLR Sbjct: 293 IPLCDAAVAVLKTQSVHQGERGDWVFPGQ-KRGKCLSNMAMTNVLKRTDWLERTSVHGLR 351 Query: 341 SIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 S + E +P + E ALAH ++V+ AY R+D +EQRR MM WA + Sbjct: 352 STFRDWVGEKTRYPERMAEVALAHQLTDKVQAAYFRADLMEQRREMMNEWAAFL 405 >UniRef50_B4WZP4 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZP4_9GAMM Length = 400 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 190/400 (47%), Gaps = 12/400 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT +++ A+P DY+L+D GL LL+++ G++ W+ Y + + G P V+ Sbjct: 3 LTSADVRNAEPLQKDYKLHDDKGLYLLVETDGNRTWKLSYR--FDGRSKVITLGPCPEVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-VKKTSVTEDY 126 LS AR+LR E++ L+A IDP + R TF VA W V + V+E+ Sbjct: 61 LSFARQLRDEARELIADGIDPIS--RCVKREVFSPSVETFEAVARDWLERVYRLEVSEEQ 118 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 R +E + +IG ++E+ L + A G L+ +R+ + +A+ Sbjct: 119 FRRTKRQMENYLIASIGKRVVSEVTPEDLKSLAAALGAEGHLDRGKRVLGIGKRIYTHAR 178 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLP-QLMHTMRTASISMSTRCLFMWQLLT 245 +TG+ + + + + + + L + +T + Sbjct: 179 DTGVAGYQQTGALRRRLTGSGTEPEFLLSTREQILDLASGVLGQWSRTTTTAALKLTVWL 238 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMK---MNRDHTVPLSDGALAILEMMKPLSGGR 302 + RP+E ARW ++D +A EW+I ++ TVPL A+ +L ++P++G + Sbjct: 239 LARPSEIVNARWSDMDLDAGEWRIHRNSTGSPTGSKIITVPLPRQAVELLREIEPITGRQ 298 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 E+IFP + + + T++AALK+ + + LR++A+TAL E G+ + I++ L Sbjct: 299 EYIFPGTRDRKKHLGASTLSAALKKVTRTTPVSTDNLRTLAATALGELGYQAEQIQSQLL 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 + +E +R YL++RR M+Q WAD + G + Sbjct: 359 NQTGDE---PADRQTYLDKRREMLQAWADYLDNTAIGKVT 395 >UniRef50_B3AX37 Site-specific recombinase, phage integrase family n=7 Tax=Enterobacteriaceae RepID=B3AX37_ECO57 Length = 440 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 95/415 (22%), Positives = 164/415 (39%), Gaps = 24/415 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQ-LYDGDGLTLLIKSS-GSKLWQFRYYRPLTKQRTKQ 58 M + LTD +I+A D + DG+GL L + W+FRY ++ Sbjct: 21 MPK----LTDIQIRAWIKADERFDGKADGNGLYLCYPKNYTMPFWRFRYK--FAGKQRAM 74 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRN-----SQEAKTNTFLLVAER 113 G+Y +SLS AR+ E +A D ++E+ E +A Sbjct: 75 VIGSYAELSLSRARETAKELSARVALGYDVAAEKQERKAEALAKMEAEKNAIRVSELAAE 134 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 ++ ++ + D + R +++DI P IG + ++K + + ++ + RGA Sbjct: 135 YFE-RQILPRWKHPDILRRRIDKDINPRIGHMKAEDVKPRHIDEMLKAIVDRGAPTIATD 193 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIG-KAFEKPQKKNMPSIRPDQLPQLMHTMRTASI- 231 + + + Y +++ P + + ++L + MRTA Sbjct: 194 VLRWTRRIFDYGIKRHVLEINPCSAFEVSDAGGKESSRDRWLTREELIRFFQAMRTAKGF 253 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 S F L R E ARW+E D + + W +P R K +PL + Sbjct: 254 SRQNELTFKLLLALCVRKMELCAARWEEFDLDNAVWHLPEERSKNGDPIDIPLVPPVIEW 313 Query: 292 LEMMKPLSGGREFIFPSRIKPNQ---PMNSQTVNAALK--RAGLGGV--LVSHGLRSIAS 344 L+ ++ LS ++ P+R ++ + T+ AL RA + V H R A Sbjct: 314 LKELRVLSCNSAWVLPARKMQHRMIPHIQESTLPVALAKVRAEMPEVPDFTIHDFRRTAR 373 Query: 345 TALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 T L G P V E L H K V YNR Y ++R + W +L+ + + G Sbjct: 374 THLAALGVDPVVAERCLNHRIK-GVEGIYNRYQYFDERTSALAKWTNLLVSLERG 427 >UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ERI0_METSB Length = 400 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 93/414 (22%), Positives = 168/414 (40%), Gaps = 36/414 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 MA+ LT I A KP+ ++ DG GL +++ SG+K W +R+ + K Sbjct: 1 MAK---NLTIKGIAALKPQAKRCEVPDGHTRGLYFVVQPSGAKSWAYRF--SFEGKPKKL 55 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 + G+YPA+ LS AR + S +A +P +K + +++ + V + VK Sbjct: 56 TIGSYPAIDLSRARSIALASATKVANGRNPAAEKKVEREKARKPSDLDLVDVVVAQFVVK 115 Query: 119 K--TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 A ++ R L+R+I +TEI + ++ + R A R+ + Sbjct: 116 HVEPKTRPQSAKEMKRILKREILSRWSGRRLTEITRSDIRDLLEAIADR-APIMANRVFE 174 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 I+ ++ ++ + ++ A P + K P K+ + +L + A + Sbjct: 175 VISSLINWSISMEMLSASPIAGLRK--PSPAKRRDRILSEKELTDVWQASERAGWPYGS- 231 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + +L+ R +E ++ W EIDF W +PA R K + H +PLS + +L + Sbjct: 232 -MIKVLILSGQRRSEVSDMTWSEIDFEERSWTLPAVRTKNGKGHIIPLSPTIIDVLLTLP 290 Query: 297 PLSGGREFIFPS----------RIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 + F+F + R K M+ Q+ N H LR +T Sbjct: 291 RIGSESGFVFTTNGFSPIRNFARRKKALMMSCQSENN----------WTLHDLRRTFATG 340 Query: 347 LNEEGFPPDVIEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + V+E L H V+ Y + D+ ++R M WA V + Sbjct: 341 MARLKVELPVVEKLLNHSSGTFGGVQGVYQQYDFQSEKREAMNLWASYVNKITN 394 >UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria RepID=B0T5C0_CAUSK Length = 436 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 102/420 (24%), Positives = 172/420 (40%), Gaps = 39/420 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR + LT ++K DG GL L+++ G K W +RY L + + Sbjct: 1 MARLWERLTALQVKR---TTRPGMHPDGGGLYLMVQKGGGKSWVYRYM--LQGRAREMGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERWWNVK 118 G +SLS+AR + +++ L IDP E ++ + AK TF + + Sbjct: 56 GPAHTISLSEARAMARDARRLKFDGIDPIEQRQLARTRTTLEAAKGFTFKQASSAYIRAN 115 Query: 119 KTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K + W +L P G +++I ++ ++P+ + ET R+ R Sbjct: 116 KAGWRNEKHAQQWESTLTTYADPIFGSRGVSDIDTGMILAVLEPIWST-KPETASRVRGR 174 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTA 229 + V+ +A GL + EK + ++ ++ +L M ++ Sbjct: 175 VEAVLDWATARGLREGENPARWKGHLEKLLPAKSRVHKVEHHAALPYAELSAFMAALKDQ 234 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + + + +LT R E A W EID W IPA RMK ++H VPL+ + Sbjct: 235 PGAGA--RALEFTILTAARTGEVIGAEWSEIDLAGQVWIIPADRMKGRKEHRVPLTAPLI 292 Query: 290 AILE----------------MMKPLSGGREFIFPSRIKP--NQPMNSQTVNAALKRAGLG 331 ILE +P+ + P + +++ + A LKR Sbjct: 293 EILEGRKADYAAVIRRVLESKRQPIPDDIPPVGPLFWGTLFGKKLSNMAMLAVLKRMKRE 352 Query: 332 GVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 L +HG RS E + +++E ALAH N+V AY R D E+R+ +M+ WA Sbjct: 353 D-LTAHGFRSTFRDWAAETTEYRSEIVEMALAHTIGNKVEAAYRRGDLFEKRKLLMEDWA 411 >UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobacterales RepID=C5F036_9HELI Length = 397 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 173/401 (43%), Gaps = 22/401 (5%) Query: 9 TDTEIKAAKPKDADYQLYDG--DGLTLLIKSSG---SKLWQFRYYRPLTKQRTKQSFGAY 63 + E+K P+D + D L + + + + + F Y + + G Y Sbjct: 5 NEKELKRL-PQDKRRRHKDASVKNLYVEVNPNKYGATYTFYFCYRQSN--KVNVVYLGKY 61 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 PA+SL DAR E + L D E K + R + K + E W K+ ++ Sbjct: 62 PAISLMDARLKANELNLRL----DKNEVLKIETRREKRNKERILREIFEEW---KQIAIK 114 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 D R LE I G+ + ++ ++K+ + ET++R + ++ Sbjct: 115 GKINQDFARPLELHIINQYGNKPVADLTKQDVLKSFDKLYLEDKRETIKRTYIHLKNLIK 174 Query: 184 YAQNTGLIDAVP--SVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFM 240 YA N + A +++I + K +I D L+ + + + ++ + Sbjct: 175 YALNRDYLQATNLLTLDIDTLYGKLTPTPFRAITDLDTFRDLLLAIDSYNGNLFVKVALQ 234 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 R + +W+ +D KIPA MK + VPLSD L + +K L+ Sbjct: 235 VSPYLFLRSSTMRNLKWEYLDEKEKILKIPANIMKAKEEFLVPLSDSVLDKILAIKELTY 294 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE----EGFPPDV 356 +IFPS I + + T+N A+KR G G ++V HG RS AST L E +V Sbjct: 295 PSPYIFPSDISKGKALAENTLNYAIKRLGFGELMVYHGFRSTASTFLYENKKNHKQDSEV 354 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 IE L H ++N+V+ YNRS LE RR +MQWW+D + Sbjct: 355 IELCLDHRERNKVKAVYNRSLRLEDRRELMQWWSDYIDNLK 395 >UniRef50_A3JW30 Site-specfic recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW30_9RHOB Length = 389 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 105/400 (26%), Positives = 175/400 (43%), Gaps = 23/400 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT ++ K Y GL L +K SG W R + R G+ P + Sbjct: 4 LTAAFVRTVK-NPGRYSDRGAVGLQLYVKKSGRSYWVQRLT--VNGIRRDIGLGSPPITT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQ--KEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 L++AR++ E+K + DP + K + + ++A + + W K+ + Sbjct: 61 LAEAREVAFENKRIARAGGDPLAQKRQKAVIPSFEQAARQVVVELGPTWRGAKEAA---- 116 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 ++E +FP IG ++ +++ + + V+ + A RL RI+ V ++ Sbjct: 117 ---SFISTMECYVFPRIGGSRVSNVQSSDVRNIIMDVR-KTAPTVAARLQTRISAVFKFS 172 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPS--IRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 P+ + A KP K P + Q+ +H + + + T+ + + Sbjct: 173 IAKNWRTDNPATSSALALPKPTHKPKPRVSLPYLQVSGCIHAVNNSHAWVGTKLAIEFTI 232 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT +R E +A W EID + W P+ MK H+VPLS+ ALAILE + ++ Sbjct: 233 LTASRSGEVRKAEWCEIDGD--LWNRPSEHMKEEIAHSVPLSERALAILEKAQEINNESG 290 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALA 362 IFP+ ++ T++ +K G + HG R+ T E F +V E ALA Sbjct: 291 LIFPAPR--GGMLSDMTMSKLIKELGFAADV--HGFRTSFRTWSQEQTNFAWEVGEVALA 346 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 H + RAY RSDYLE+RR MM W+ + G +V Sbjct: 347 HSVGGKSERAYARSDYLEKRRLMMAAWSSYL-TLPRGEVV 385 >UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1 Tax=Geobacter sulfurreducens RepID=Q74H29_GEOSL Length = 439 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 170/449 (37%), Gaps = 65/449 (14%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR++ +D ++A KP++ Y + +GDG + + SG++ + + Y +R + Sbjct: 1 MARQSTKFSDKFLRALKPQEKPYDIREGDGFGVRVFPSGARSFFYMY--HFDGKRRFLNL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL+DAR+ ++ AK IDP +EQ R +EA T L+ E N K Sbjct: 59 GKYPQLSLADARQKHRDAVSQHAKGIDPLAATQEQKRERREAITVA-DLIDEYVKNWAKV 117 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 E A + R+L +D+ P G +IK + ++ + RG+ R + + + Sbjct: 118 YKVERSATEDERALSKDVLPYWGKRKAKDIKRTDAIALLERIVRRGSPGQARNILKVGRK 177 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 + +A ++A P I KA + + ++ + + ++ S T+ Sbjct: 178 MYEFAIERKYVEANPFSRISKAVPATMPRTRSRVLTESEIKYIWSAIDKSAGSDETKRAL 237 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-----------DHTVPLSDGA 288 L+T RP E EID W IP R+K + H V LS A Sbjct: 238 KLILVTAQRPGEVIGMHRREIDGE--WWTIPPERIKTEKDRTRSNSVGPQPHRVYLSPLA 295 Query: 289 LAILEMMKPLSGGREFIFPSRIK--------------------------------PNQPM 316 L + + +IF S P P+ Sbjct: 296 LEL------IGDKDGYIFESPRGGAMDSKALSHVVHAAPLVPELVRDTEGHVFAGPCGPV 349 Query: 317 NSQTVNAAL-KRAGLGGV--------LVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 ++ + L K H LR A T ++ P E L H Sbjct: 350 AAKALMQLLEKEIAYPDKEKYYGLTRWTPHDLRRTARTRMSAINIPTRHAERVLNHTLP- 408 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 +++ Y+ Y Q++ + WA ++ Sbjct: 409 GIQKTYDLYRYDPQKKAALTKWAAYLEEL 437 >UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteria RepID=B8GZR1_CAUCN Length = 517 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 113/439 (25%), Positives = 178/439 (40%), Gaps = 51/439 (11%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR LT E+K DG GL L + + GSK W +RY L + Sbjct: 86 MARLIDRLTALEVKRL---AKVGMHPDGRGLYLQVHNGGSKSWIYRYT--LKGRVRAMGL 140 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK------------EQVRNSQEAKTNTFL 108 G VSL++AR +++L + +DP + + + F Sbjct: 141 GPTHRVSLAEARAQAQAARLLRDQGLDPIAARAAATPPPEPPSPPKTREIAVAEAGLAFK 200 Query: 109 LVAERWWNVKKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 A + + W +L +P GD ++EI ++ ++P+ + A Sbjct: 201 DAAAAYIRTNSAAWRNAKHQAQWSATLATYAYPVFGDRPVSEIDTAMVLSVLEPIWSTKA 260 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQL 219 ET RL RI V+ +A G +K + ++ ++ + Sbjct: 261 -ETASRLRGRIEAVLDWASVRGHRQGENPARWKGHLDKILPAKSKIARVEHHAALPFSTI 319 Query: 220 PQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD 279 P M + T + + + +LT R E A+W EIDF A W PA R K ++ Sbjct: 320 PAFMRDLGTRPGAAA--RALEFAILTAARTGEVIGAQWSEIDFEARLWTQPAERTKTRKE 377 Query: 280 HTVPLSDGALAILEMMKP--LSGGRE-----------------FIFPSRIKPNQPMNSQT 320 H VPL D A+AIL M+ L+G RE FIF + + +++ Sbjct: 378 HRVPLCDAAMAILASMREAFLTGRREFLLLYNKPVPDDMPLEGFIFAGMRR-GKGLSNMA 436 Query: 321 VNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYL 379 + L+R G L +HG RS E G+ +V+E ALAH +V AY R D L Sbjct: 437 MLKTLERMGHPD-LTTHGFRSTFRDWAAETTGYQNEVVEMALAHAIAGKVEAAYRRGDLL 495 Query: 380 EQRRPMMQWWADLVKAADS 398 E+RR +M+ WA ++ + Sbjct: 496 EKRRDLMRDWAAYCASSTA 514 >UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacteraceae RepID=Q3J2T0_RHOS4 Length = 439 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 194/444 (43%), Gaps = 47/444 (10%) Query: 1 MARKTKPLTDTEIK-AAKPKDAD---YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 M +K + ++K AA P D + + GL L I +G+K W R + R Sbjct: 1 MPKKAREWGALDVKRAAHPGDGANVWHAVGGVAGLLLQITPTGAKSWLLRTT--VAGTRR 58 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERW 114 G+YP V L++AR+ E+K +A +DP E +K A+ TF A++W Sbjct: 59 AMGLGSYPEVGLAEARERAREAKRKIAAGVDPIEERKATRAALAAAQRRSLTFADAADKW 118 Query: 115 WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 K + E + +L FP IG +++ E+ +V+A+ + +T ++ Sbjct: 119 IKAKLSDRPEKSQKAVRATLTAYSFPEIGALTVQELTPQDVVRALNTIW-TAKPDTATKM 177 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFE----------KPQKKNMPSIRPDQLPQLMH 224 + ++ +A +G + K + N P++ +L Sbjct: 178 RGYLEAILSWATVSGYRTGDNPARWAGNLKELLPAPSVVAKGRAGNFPAVPVARLADWWE 237 Query: 225 TMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPL 284 + +T + LT R E A W E+D +A+ W +P ARMKM R+H VPL Sbjct: 238 ELGQREGMGAT--ALRFAALTAARSGEVRGALWSEVDLDAALWVVPGARMKMGREHRVPL 295 Query: 285 SDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA---------------- 328 S A+A+L + L+G + IFP ++ +V+A ++R Sbjct: 296 SGPAVALLRGLPRLAGTGDLIFPGPR--GGILSDMSVSAVMRRMQEDAETEAKMAGRPVS 353 Query: 329 --GLGGVLV-----SHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQ 381 G HGLRS E G+ D+ E ALAH+ +EV RAY RSD LE+ Sbjct: 354 AAGWRDTRTGRPAVPHGLRSSFRDWAAEVGYDRDMAEIALAHLVGSEVERAYRRSDMLER 413 Query: 382 RRPMMQWWADLVKAADSGSIVLTH 405 RR MM+ WAD++ A SG+ V+ Sbjct: 414 RRAMMERWADVL-AGRSGASVVEF 436 >UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobacteria RepID=B8IIS8_METNO Length = 420 Score = 253 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 102/415 (24%), Positives = 171/415 (41%), Gaps = 20/415 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 R+ L+ ++ + DG GL L++ +G K W F Y +R + G Sbjct: 15 REVNKLSARRVQTLT---EPGRHADGGGLYLVVDPAGGKRWVFLYRMA--GRRREMGLGP 69 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 +V L+ AR+L AE++ +A +DP + ++ + TF VAE + ++ + Sbjct: 70 VLSVPLARARELAAEARAQVAGGVDPIDARRAPPSDEPPPHRITFAEVAEVYMTDRERAW 129 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 WR ++ + + ++ ++ ++P+ ET RRL RI ++ Sbjct: 130 RNAAHRRQWRQTLEVQAASLWAMPVADVNTEAVLAVLRPIW-HSKAETARRLRGRIERIL 188 Query: 183 IYAQNTGLIDAVPSVNIGKAFE-------KPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 A+ G + K Q+ + ++ ++P + +R T Sbjct: 189 DAARVAGHRGPENPARWKGHLDVLLPRAGKLQRGHHNALPYMEVPAFVAEIRQRE--AQT 246 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 +LT R E W E+D + W +P RMK R H VPL A+ IL + Sbjct: 247 ARALELLILTAARSGEVRGMTWAEVDLVGALWTVPKERMKAKRPHRVPLCARAVEILSKL 306 Query: 296 KPLSGGRE-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN-EEGFP 353 + E IFPSR + ++ A L+RA + +HG RS E P Sbjct: 307 HLEAPDAEGLIFPSR--NDTVLSDMVFAALLRRAKYPD-ITAHGFRSSFRDWAADETDHP 363 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 +VIEAALAH+ + RAY R D L +RR +M W V S + ++ Sbjct: 364 REVIEAALAHMVGDATERAYRRGDALAKRRLLMDDWGAYVCGGASAAEPPMSATR 418 >UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G635_GEOUR Length = 437 Score = 253 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 100/423 (23%), Positives = 176/423 (41%), Gaps = 30/423 (7%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 RK P TD IK+ KP+ YQ+ +G G + + +G K W + Y +R + + G Sbjct: 13 RKPGPFTDRFIKSLKPESEMYQVREGRGFAIRVLPTGVKTWYYIYT--FNGKRRQLNLGN 70 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-KTS 121 YP SL DA K+ ES L+ +DP + + + L + + + K Sbjct: 71 YPDKSLEDAHKVYLESAALVKNGVDPMDKPVAADPPPPQVELTVRRLAVDLYLDEWSKIH 130 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 +E + + ++LE D+ PA GD +I+ V+ ++ V R A R + + + Sbjct: 131 HSERWHYNNKKALEADVLPAWGDRLAADIRRKDAVEILELVAKR-APGQARNVLKAARGM 189 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPS---IRPDQLPQLMHTMRTASISMSTRCL 238 YA + L++ P +I + P+ + M + ++ L + + S T+ Sbjct: 190 YTYAVDRELLEYNPFTDIKISRTIPKMQPMSRDRELSEKEIKHLWNAIDEGGGSDGTKRA 249 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----DHTVPLSDGALAILEM 294 L+T RP E EI W IP R+K + DH + LS A+++ Sbjct: 250 LKLILITGQRPGEVVGMHRQEI--EGKWWTIPWQRIKTRKRRQEDHRIYLSPLAMSL--- 304 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG---------GVLVSHGLRSIAST 345 + G+ FIF N M ++ +++ H LR A+T Sbjct: 305 ---IGDGKGFIFSDPSGENS-MTENALSHHVRKDIPDTVKKPYYGLPRWTPHDLRRTAAT 360 Query: 346 ALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 L+ G ++I+ L H K V YNR+ Y ++++ + W+ ++ +G T Sbjct: 361 RLSRIGASDEIIDVILNHAKK-GVSGIYNRNKYDKEKQQWLTKWSQHLEKLINGKQAATS 419 Query: 406 LSK 408 S Sbjct: 420 TSN 422 >UniRef50_C6RGV6 Phage integrase n=3 Tax=Campylobacter RepID=C6RGV6_9PROT Length = 407 Score = 253 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 100/389 (25%), Positives = 165/389 (42%), Gaps = 20/389 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA L DT+I+ A K+ DY L DG GL +LI S G K W F Y P++ ++ F Sbjct: 15 MA--IDILKDTQIRKAIKKEKDYSLTDGGGLAILITSKGVKGWVFYYIDPVSGKKCSAGF 72 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP ++L+ AR+LRAE K L+++ I P+EH+K+ Q TF V W ++K Sbjct: 73 GLYPDITLARARELRAEYKSLISQGISPKEHKKQAREQRQSDHKQTFSKVFNEWLELEKM 132 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V + I P IGD +I I + + ++ + + +T + L Q +N Sbjct: 133 RVLPKTLQTKANRINNHITPLIGDRAIKSINHGEIAQILEQI-GKDTPQTAQILHQLLNN 191 Query: 181 VMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQL-PQLMHTMRTASISMSTRC 237 + YA G NI + ++ + + ++ + +STR Sbjct: 192 IFHYATTKGYTPFNIISNIQAKAIIINKEAEHYGKLTEIEDLRAFVNKIYDYPFFLSTRN 251 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----DHTVPLSDGALAILE 293 + + L R A +W+ +DF+ IP K +PLSD ++IL Sbjct: 252 ILKFALHIPLRVAPLTLLKWEYVDFDKKLLTIPRELQKNKNKSLGAFILPLSDEVISILR 311 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-----GGVLVSHGLRSIAST--- 345 + ++F + N P++ T +K G ++ +H R I T Sbjct: 312 EQEREFKAYPYVFMNTSYKN-PIHKDTPTKTIKEFEFYDRDTGRIITAHSFRGIFKTAVY 370 Query: 346 -ALNEEGFPPDVIEAALAHVDKNEVRRAY 373 L + + I AL H+ + V +Y Sbjct: 371 NYLEQHNTSTEAINKALDHLHGDRVELSY 399 >UniRef50_A5UG79 Prophage integrase n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG79_HAEIG Length = 339 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 129/338 (38%), Positives = 195/338 (57%), Gaps = 11/338 (3%) Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 S GA+P +SL+ AR++ E + L+ ++IDP E++ ++ E K TF +A RW + Sbjct: 1 MSLGAFPDLSLAYAREIATEYRGLILRNIDPLEYRN---SSNIEEKKTTFAEMAIRWRDK 57 Query: 118 --KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 K + + +D +R +E +FP I D+ I + TL + P++ T+ ++ Sbjct: 58 RLKLGKLKPETVNDAFRRVELHLFPKIADLPIDQANYKTLEPVLSPLKNSN---TLYKIN 114 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 IN++ A++ LI P I F + KN P++ P++LP+L M+ A++ T Sbjct: 115 IAINQIFRMAEDEDLIVKNPFRKIHDEFTYVETKNHPTLAPEELPRLFEVMQGANLEKPT 174 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN-RDHTVPLSDGALAILEM 294 L WQLL+I R +EA W +ID++A IPA RMK R H+VPLS AL ILE Sbjct: 175 ALLIEWQLLSILRSSEAVSIEWADIDWDAKALHIPAERMKGGKRSHSVPLSRQALNILEQ 234 Query: 295 MKPLSGGREFIFPSRIKP-NQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-F 352 M+ +G R+++F SRI P N+PMNS N ALKR G G+LV+HGLRSIAST L+E F Sbjct: 235 MRRYNGNRKYVFCSRIAPYNRPMNSGAANVALKRMGFKGLLVAHGLRSIASTYLHELDRF 294 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 + IE L+H ++ +VR AY++S R+ +MQ W Sbjct: 295 SSEAIELCLSHENRGKVRAAYDKSKKWRSRQEIMQTWG 332 >UniRef50_D1R6D1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6D1_9CHLA Length = 464 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 96/423 (22%), Positives = 178/423 (42%), Gaps = 39/423 (9%) Query: 10 DTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQR---TKQSFGAY- 63 D + +PK+ Y + D GL L +K +GSK W F Y P K++ K+ G + Sbjct: 33 DDYCQKLQPKEKPYYVRDSQVKGLVLRVKPTGSKSWIFCYTVPCHKRKWRERKKGLGCFK 92 Query: 64 ------PAVSLSDARKLRAESKVLLA-KDIDPQEHQKEQVRN--SQEAKTNTFLLVAERW 114 VS+ AR K + DP E ++++ ++A + ERW Sbjct: 93 GGRTGVAGVSVKTARTEAERMKHEVRHNGADPVEDKRKRAAEVIREQASRVLVKDLFERW 152 Query: 115 WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 N + +D + R + +D+ P+IG+++I E++ + + + RG + + Sbjct: 153 ANTDLVN-RKDKGAEARRMMLKDVIPSIGELNIKEVRKGHITEITDQLLQRGVNRMAKVV 211 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSIRPDQLPQLMHTMRTASISM 233 I ++ +A L++ P+ I K + + D++ +L + +A ++ Sbjct: 212 FSLIRQMFRFAVTRDLLEFDPTAAISKTTIGGANVERDRVLSEDEIQELGIKLSSAGMAD 271 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 + L T R E +ARW DFN W+IP+ K +R+H + LS ++ Sbjct: 272 TATIAIWLVLGTCCRIGELLKARWSHFDFNRKLWRIPSENSKNDREHIIFLSLFTFSLFT 331 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTV--------------------NAALKRAGLGGV 333 +K ++G E+ FP+ + + +T+ NAAL G+ Sbjct: 332 QLKAITGEGEWCFPASRLDDHHVCPKTITKQITDRQRSLPNLKNRTKNNAAL--MLSRGL 389 Query: 334 LVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 H LR +T + G P+V E L H ++N V+R Y R Y + + + + + Sbjct: 390 WKPHDLRRTGATLMTALGVLPEVAERCLNHTEENRVKRIYQRHTYESEMKMAWEKLGNHL 449 Query: 394 KAA 396 + Sbjct: 450 EKL 452 >UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8P5_PROMM Length = 422 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 103/413 (24%), Positives = 189/413 (45%), Gaps = 27/413 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKS---SGSKLWQFRYYRPLTKQRTKQS-FGAY 63 LT+ E+++ K Y GD L +L++ SG K + + + + FG Sbjct: 3 LTEREVRSLSVKSKRYSRSVGDSLYVLVEPVKGSGGKSFVGKMRSNGKQIDVRIGVFGKG 62 Query: 64 PA-VSLSDARKLRAESKVLLAK-DIDPQEHQKEQVRNSQEAKTNTFL-LVAERWWNVKKT 120 P +L AR + + DP+E QK++ R + ++ L + + + KT Sbjct: 63 PGQWTLKAARDEWFRLRSWYRETGRDPRELQKDEKRQLAKQSSDQTLNELVDSYLIACKT 122 Query: 121 S--VTEDYADDIWRSLERDIFPAIG-DISITEIKAHT----------LVKAVQPVQARGA 167 +E D L +I PA+G ++ + + + ++ RG+ Sbjct: 123 KYKQSETTIKDKKNKLSNEIIPALGGSTPVSRLGWDEKSKGRTGREAVFEITDSIEKRGS 182 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDA--VPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHT 225 L R++ + + YA G ++ P+V + ++ P + D+LPQL+ Sbjct: 183 LNQARKVLGVMRHLFDYAIERGWMERGQNPAVQARSVGAGHEVQHNPCLSWDELPQLLDD 242 Query: 226 MRT--ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVP 283 + + S L+T R RWDE+D+ A+ W +P +RMK ++H VP Sbjct: 243 LNRNKGNGSQVVLAAIKLDLMTFLRVGSLVPMRWDEVDYAANLWTVPGSRMKSGKNHWVP 302 Query: 284 LSDGALAILEMMKPLSGGREFIFPSRIKPNQP-MNSQTVNAALK-RAGLGGVLVSHGLRS 341 L+D +L ++ ++G ++++F S ++P ++ +N LK R G GG +HGLRS Sbjct: 303 LTDPIKDLLAHLRKINGDQDYVFWSPRGRSKPHIDESALNQHLKVRLGYGGRQTAHGLRS 362 Query: 342 IASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 + TA E F +VI+ + H ++VR+AY++S L++R M+ W D + Sbjct: 363 LPLTAGQEVLKFSAEVIQRQMDHAVGDKVRQAYDKSQLLDERWKFMRAWCDAL 415 >UniRef50_A7MTK6 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MTK6_VIBHB Length = 290 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 102/277 (36%), Positives = 161/277 (58%), Gaps = 1/277 (0%) Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + A+ + L I+P +GD+ + EI+A + A++P++ +G LETV R +M Sbjct: 5 QKTAEGYRQKLNLHIYPKLGDVPVKEIRASMWIDAMRPLERKGKLETVVRTTALFRRIMN 64 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 +A N I P ++ F+KP++ N I +LP L+ + +++ + + LF +QL Sbjct: 65 FAVNNDYIHNNPIGSMRDVFKKPKRGNFSCIDIKELPTLLTMVVQSTMRPANKLLFEFQL 124 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 T+TR EA ARW+E F W +PA R K H +P++ ++IL+ K LS G E Sbjct: 125 HTLTRSNEATGARWEEFSFEEKVWYLPAERAKNRLMHKIPMTPEVISILKAAKSLSSGSE 184 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALA 362 ++FPSR +P++S+T+NAA KR GL G + SHG RS+ ST L E F VIEA L+ Sbjct: 185 YVFPSRTSLKKPVHSETINAAFKRLGLSGKMTSHGTRSLGSTILYERTDFESVVIEAVLS 244 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 H D++ VR AYNR+ + E+RR ++WW+ + +G Sbjct: 245 HTDRDGVRDAYNRNKFFEKRRAALEWWSKHIVGLTNG 281 >UniRef50_C6E138 Integrase family protein n=1 Tax=Geobacter sp. M21 RepID=C6E138_GEOSM Length = 433 Score = 248 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 99/443 (22%), Positives = 180/443 (40%), Gaps = 51/443 (11%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M+R TDT I+ KP +Y+ +G+G T+ + SG K W + Y + +R Sbjct: 1 MSRARIVFTDTMIRKLKPDTNEYRKSEGNGFTIRVMPSGFKSWLYLY--AINGKRRCMGL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+L AR +K ++ +DP + ++E+ ++A T L + K Sbjct: 59 GHYPDVTLETARDRFEAAKKMVKNGMDPLDAKEEEQEQHRKALTVK-QLFDDYLVRHAKL 117 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + E + R + ++ P G IK ++ + R AL + + + Sbjct: 118 NKRESSWREDERLFKVNVEPEWGKRKAEHIKKRDCIELLDKYADRPAL--CHNVMKLTRK 175 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHT-MRTASISMSTRCLF 239 + +A +++ P + E ++ + + ++ +L T + A+IS + + Sbjct: 176 LFNFAVEKDILEHTPFTGVKVPVELESRERI--LTDTEIKKLWRTELPKAAISDEVKQII 233 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 LLT R E +E+D + W IP R K + H V L+D A+ +L K ++ Sbjct: 234 KLLLLTGQRVGEVCGITVNEVD--GNWWTIPQERSKNGQTHRVYLTDTAIKLLG--KSIN 289 Query: 300 GGREFIFPSRIKPN--------QPMNSQTVNAAL-------------------------- 325 G + FPS + N + ++ V A+ Sbjct: 290 G---YYFPSPVVKNDSDGKPVFKHIDENAVAYAIRKNLKDYQPRRPIKGDRISMVQVPEE 346 Query: 326 KRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPM 385 K+ + H LR ST+L + GF ++I+A + H K V + YNR Y ++R Sbjct: 347 KKMSIAH-FTPHDLRRTFSTSLAKLGFNDEIIDAVMGH-KKQGVIKIYNRHKYDTEKRQA 404 Query: 386 MQWWADLVKAADSGSIVLTHLSK 408 + W + + S T + K Sbjct: 405 LVAWEKRLLSLTSDEGQATSVKK 427 >UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TC0_GEOMG Length = 414 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 94/414 (22%), Positives = 154/414 (37%), Gaps = 45/414 (10%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSK----LWQFRYYRPLTKQRTKQSF 60 + +D I+ KP+ Y + + G +++ SG K F Y + +R + Sbjct: 2 STQFSDKFIQNLKPEAKKYYIRESRGFAIVVHPSGIKNPKGTKTFLYIYTINGKRKELKL 61 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+L DAR E+ L DP ++ + + TF E + K Sbjct: 62 GNYPEVTLKDARIKHGEAYARLVNGEDPVT--PPVIKAEPQDENLTFGHFTELYLQWSKD 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + + + I +L +D P I IK + ++ V RG V L + + Sbjct: 120 NHSPKWHNTIKCALNKDALPVWEYTLIASIKRRDAIAFLENVARRGI--QVINLHKATSS 177 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEK--PQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 V YA I++ P + K + ++ + + T+ Sbjct: 178 VFDYALEREYIESNPMAGLKAKTIPALKPKARERFLSDSEIKHVWKAIDEGPGYDETKRA 237 Query: 239 FMWQLLTITRPAEAAEARWDEIDF-----------NASEWKIPAARMKMNRDHTVPLSDG 287 ++T RP E A EI W IPA RMK +H + L+ Sbjct: 238 LKLIMVTAQRPGEVAAMHRREIQTGVGKPRCKICKRCGWWTIPAERMKNGEEHRIYLTPT 297 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKR---------------AGLGG 332 AL + + +IFPS QP+N +++ + R GL Sbjct: 298 ALEL------IGDAEGYIFPSPQD-GQPINRNSLSQLVSRERNNKKPNGEMYPPYYGLP- 349 Query: 333 VLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMM 386 H LR A T L G P + E L+H + V R YNR DY+E+++ + Sbjct: 350 EWTPHDLRRTARTLLARVGVPEEHAEEVLSHKKEGLVDR-YNRHDYMEEKKEAL 402 >UniRef50_C3MF92 Phage integrase-like protein contains catalytic core domain n=77 Tax=Alphaproteobacteria RepID=C3MF92_RHISN Length = 402 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 105/411 (25%), Positives = 179/411 (43%), Gaps = 28/411 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR LT +K A + DG GL L + G W R + +R + Sbjct: 1 MARPLNKLTAVAVKNASAG----KHSDGGGLWLHKREDGGSQWILRV--NVHGRRREMGL 54 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+ VSL +AR+ + L+ +DP + + ++ R + +A + +K Sbjct: 55 GSASDVSLKEAREAAERWRALVRSGLDPIKER-QRQRREAARNLHCLDDIARDAFESRKA 113 Query: 121 SVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + D W LE + P +G + + +I + + P+ ET R+ R+ Sbjct: 114 ELKGDGIAGRWFSPLEIHVLPKLGKVPVVDIDQTDIRDVLAPIW-HSKAETARKALNRLA 172 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAF---EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 + +A GL + + + +A ++ + +N+P++ +P ++ S+ T Sbjct: 173 ICLKHAAALGLDVDLQATDKARALLGKQRHKIENIPAMPWQDVPGFFASLSDGSV---TH 229 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----DHTVPLSDGALAIL 292 +LT R R ++I+ + W IP MK + D VPLSD ALA++ Sbjct: 230 LALRLLILTGVRSGPLRFLRDEQINGD--VWTIPGEAMKGRKGATADFRVPLSDAALAVV 287 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EG 351 E + + F+FPS K ++ T++ ++RAG+ HG RS + E Sbjct: 288 EQARQHA-RDGFLFPSLRK--GVISDATMSRLMERAGMEAR--PHGFRSSLRDWIAEATD 342 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 P D+ E L H+ V RAY R+D+LEQRR +M WA V SG ++ Sbjct: 343 TPHDIAETTLGHIVGGAVERAYRRTDFLEQRRQLMARWARHVTG-QSGQVI 392 >UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6_CUPTR Length = 418 Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 105/419 (25%), Positives = 179/419 (42%), Gaps = 24/419 (5%) Query: 1 MA-RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MA R+ LT +I D DG L I SGS+ W F++ L + + Sbjct: 1 MATRQLHRLTALKIGKL---DVPGHYPDGGNLYFQISESGSRSWIFKFT--LRGRSREMG 55 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERWWNV 117 G +VSL+ AR A+ + LL +DP E +K ++ R + + F A + Sbjct: 56 LGPLASVSLAAARAEAAKCRDLLRDGVDPIEARKCKQRQRMLELSGPRLFKAAAADYIAK 115 Query: 118 KKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + + W ++ P +GD + +I +V+ +QP+ + ET RL Sbjct: 116 HRAGWKNEKHAQQWTNTIATYAAPILGDQDVRDIDTAMIVQVLQPIWIK-KRETAFRLRG 174 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRT 228 R+ ++ + G + +K + K+ P++ ++P M +R Sbjct: 175 RLECILDAEKALGHREGENPARWRGHLDKLLPKQNRRKKIKHHPALPWQEIPSFMKELRE 234 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 + + + +LT+ R E AR +E D W +P RMKM VP++D Sbjct: 235 QRGTAA--RMLEHLILTVVRTQEVQFARPEEFDMRYRVWTVPGERMKMELPLRVPMTDRL 292 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 + ++E P +++P R K +P+++ + L+R G G + HG RS + Sbjct: 293 VELVEAALP-GARDGWLYPGR-KKGKPLSNMAMLKLLERMGY-GHVTVHGFRSTFRDWVA 349 Query: 349 E-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHL 406 + + + E ALAH +NE AY R D LE+RR MM+ WA + I L + Sbjct: 350 DCTEYADSLAEMALAHAIQNESEAAYRRGDMLERRRKMMRDWAHYCSGQAAAVIPLGTM 408 >UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodobacter sphaeroides RepID=Q3J1E6_RHOS4 Length = 413 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 88/411 (21%), Positives = 157/411 (38%), Gaps = 28/411 (6%) Query: 7 PLTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 L+ ++ KP D ++ D GL L+++ +G K WQ RY + S GA+P Sbjct: 2 KLSAAGVEKIKPTDKRQEIPDSLCVGLYLIVQPTGKKGWQVRYRH--GGVHRRMSLGAFP 59 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +SL+ AR+ ++ + DP K + + + ++ + + Sbjct: 60 VLSLAGARERARQTLAAASAGTDPAAEVKAAKAPKLDGDRDKIKTLIGQFDKRHLSKLKS 119 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + R LER + A G+ + +I ++ + + G + T R+ + + + Sbjct: 120 GAV--VRRELERHVVSAWGERDVHQIGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFGW 177 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 ++ P+ + A ++ + + + D++ LL Sbjct: 178 CVERDILATSPAAGVKPAGKETSRARV--LTDDEIRWFWTACEAEGFPWGP--FGKVLLL 233 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS---GG 301 T R E A+ EI + W + A R K R H VPL+ A L+ ++ ++ G Sbjct: 234 TGQRLNEVAQMTDSEIRGD--LWHLTADRTKNGRAHDVPLTGAVRAALDEVERVTDEEGR 291 Query: 302 REFIFPSR--------IKPNQPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTALNEE 350 FIF + K + V A K G H LR A+T + Sbjct: 292 VRFIFTTTGRTPVSGFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMARL 351 Query: 351 GFPPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 G P V EA L HV + Y R DY +++R ++ WA V + G Sbjct: 352 GIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWARFVLSLVEG 402 >UniRef50_Q1YTS1 Putative phage integrase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTS1_9GAMM Length = 429 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 113/436 (25%), Positives = 188/436 (43%), Gaps = 45/436 (10%) Query: 1 MARKTKPLT-DTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MA +T L D IK P Y L GDGL IK SG+ + RY + + + Sbjct: 1 MANRTSKLELDAIIKGKIP--KRYPL--GDGLYFTIKHSGAMSFGIRYQ--INGKTDYKG 54 Query: 60 FGAYPAV--SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT-------NTFLLV 110 G Y V +L AR +V + + IDP+ +++ + Q AK TF Sbjct: 55 MGGYDKVHNNLGIARAKCEAYRVQIRQGIDPKIEEQQALNLKQSAKAAEDQLKDRTFAKY 114 Query: 111 AERWWNVKKTSVTEDYADDIWRS-LERDIFPAIGDISITEIKAHTLVKAVQPVQARGALE 169 A + + S T WRS LE+ FP IG+ ++++ +++ +QP+ E Sbjct: 115 AYQHIKSLEPSWTNVKTFAQWRSSLEQYAFPVIGETPVSDVSRTQVLEILQPIWF-DKTE 173 Query: 170 TVRRLCQRINEVMIYAQNTGLI-DAVPSVN-------------IGKAFEKPQKKNMPSIR 215 T R+ +RI ++ A + L + P++ + KA +++ S+ Sbjct: 174 TADRVRRRIAAILDAAISDDLRTERNPAIWRGSLHGKLPSVETLKKAKAPTEERAHASLH 233 Query: 216 PDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK 275 LP M ++R + +L +R E +A W E D W IPA RMK Sbjct: 234 YAHLPMFMESLRAQDG--IGARALEFCILNASRTTEVLDATWGEFDLEEGIWSIPARRMK 291 Query: 276 MNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVL- 334 H +PLS ++A+++ +K L +F+FP+R + ++ +++ LKR Sbjct: 292 GRERHNIPLSTQSIALIKQLKQLKM-SDFVFPNR-SNGKSLSQAGMSSVLKRMNKINDWK 349 Query: 335 -------VSHGLRSIASTALNEEGFPPDVI-EAALAHVDKNEVRRAYNRSDYLEQRRPMM 386 HG R T E+ + E ALAH K++ Y + D +++RR +M Sbjct: 350 DIHGQLITVHGFRGCFKTWTTEKTDTDWLTGEMALAHKIKDKSSATYQKGDLIDKRRRLM 409 Query: 387 QWWADLVKAADSGSIV 402 Q ++D SG +V Sbjct: 410 QKYSDYACTTPSGKVV 425 >UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KC37_9RHOB Length = 385 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 88/404 (21%), Positives = 160/404 (39%), Gaps = 27/404 (6%) Query: 1 MARKTK-PLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTK 57 M + + PLT+ I+ AKP D Y L+D GL L + +SG+K W R + + Sbjct: 1 MPKLAQQPLTELAIRKAKPADKRYDLFDASVRGLGLRVATSGTKSWFM--MRRFNGRMLR 58 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 +FG YP ++L++AR ++ + + KT+ F +V + W Sbjct: 59 TTFGRYPDLTLANARLKAPNVLADMSDGL-----------TQGQRKTDLFKVVLDEWL-- 105 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 KK + ++ + PA G + + I + + + + G+ R+ Sbjct: 106 KKDQAKNKSVHQVRVAMYKHALPAFGPMPVASITKRDVNRLIDKIVDAGSPVAANRVLAF 165 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 + + +++ P+ I +K + +++ + Sbjct: 166 TKRFFSWCKERDILELSPAEAIRP--PSKEKTRDRVLTLEEIKGFWAACDQ--MGYPWGP 221 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 +F LLT R E ++A W E+ +PA R K R H + LSD A+ I++ + Sbjct: 222 IFQLLLLTGARLREVSQASWGEVSIADGTLNLPARRTKNGRAHQIQLSDQAINIIQALPK 281 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDV 356 + G ++ IF + S+ +G+ H LR +T E G P V Sbjct: 282 VEG-QDLIFTTNGTTAVSGFSKVKKRLDIISGVAD-WRFHDLRRSFATHSTERLGISPVV 339 Query: 357 IEAALAHVDKN--EVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + L HV V Y +YLE+RR +Q W + ++ + Sbjct: 340 ADKILNHVTGQVRGVAAIYQHGEYLEERRASLQKWGNFIQGLIA 383 >UniRef50_A4AB16 Phage integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4AB16_9GAMM Length = 449 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 103/452 (22%), Positives = 187/452 (41%), Gaps = 46/452 (10%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSS--GSKLWQFRYYRPLTKQRTKQ 58 MA LT +KA +D L DG GL ++ + G QF Y K+ Sbjct: 1 MA--LNLLTTARLKAVAEEDIGTILNDGGGLRGRVRKNRAGDLTVQFEYKYRDGKKYRTS 58 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAER----- 113 +P SL++ R++ K LAK DP E +K + +Q + N Sbjct: 59 KVEQWPKRSLAEIREIYRSIKTGLAKGEDPIELRKAERLEAQLDQANRLETQRRELERLA 118 Query: 114 --------------WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAV 159 W + S + + R++++DI PA+G + + +IK L+ + Sbjct: 119 FEAANTRTLTDAIYQWEKLELSRRKRGGAEAIRAIKKDIIPALGGMPLADIKRAMLIDQL 178 Query: 160 QPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSIRPDQ 218 V RG+L L + + YA ID P + K QK+ + ++ Sbjct: 179 DRVVERGSLVMANHLFGDLKQFFTYAVARDWIDVHPLAGLTKERIGGRQKERDRYLSDEE 238 Query: 219 LPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR 278 + +L +++A++ ++T L T R E ++ARW++I+ EW+IPA K R Sbjct: 239 ITELTERLQSANLLITTEQSIWIMLSTCCRVGELSQARWEDIELEQGEWRIPARNSKNAR 298 Query: 279 DHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKR----------- 327 H + LS+ A E + ++ G + PSR + ++ ++++ ++ Sbjct: 299 SHIIYLSEFAKIQFEELHRITAGSNWCIPSRSREA-HIDQKSISKQIRDRVRKTSLKGRS 357 Query: 328 ------AGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQ 381 GG H LR +T + E G +VIE L HV+ N+++R Y R + + Sbjct: 358 NSSGTLLLSGGPWTPHDLRRTGATMMGELGVMGEVIERCLNHVEINKLKRTYQRHELRAE 417 Query: 382 RRPMMQWWADLVKAAD----SGSIVLTHLSKI 409 +R + D ++ +G++ + + Sbjct: 418 QREAWRLLGDRLELLSTVDPTGNVTVGSFKRA 449 >UniRef50_B4W6V7 Site-specific recombinase, phage integrase family protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W6V7_9CAUL Length = 416 Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 117/418 (27%), Positives = 176/418 (42%), Gaps = 32/418 (7%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K LTD E K A DG GL L +K++G++ W F Y K+R + G Y Sbjct: 2 KLNKLTDREAKTAAAG----LHSDGGGLYLNVKTTGARAWVFVYR--TGKRRREMGLGGY 55 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA------KTNTFLLVAERWWNV 117 P V L +AR E++ +A+ DP E ++ + + TF +VA++ + Sbjct: 56 PGVKLVEARAAAVEARAQIARGEDPIEARRANAPPAVDPTPIDAPAAATFKVVAQQVIDS 115 Query: 118 KKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + W RSL R P + +I ++ + P E+ +L Sbjct: 116 LSPGWRGAKTKEGWERSLLRQAAPLADKLP-ADITTQDVLDVLNPYW-TSRPESAGKLRD 173 Query: 177 RINEVMIYAQNTGLIDA-VPSVNIGK-AFEKPQKK-----NMPSIRPDQLPQLMHTMRTA 229 RI V+ A+ GL + P+ G A P+++ + ++ ++ M + Sbjct: 174 RIETVLDVAKVNGLREGENPARWRGHLALMLPKRRKLSKGHHRALPYERAAGFMAALLAE 233 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + + +LT R A W EI W IP ARMK RDH VPLS A Sbjct: 234 RAMGA--RALSFVILTGVREGVVRTATWGEISPAGDLWTIPKARMKSERDHRVPLSAAAR 291 Query: 290 AILEMMKPLSGGRE------FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIA 343 A+L + P IFP KP +P+++ V LK G+ HG RS Sbjct: 292 AVLVGVNPTGSSDGVPPAGQLIFPG-GKPGRPLSNTAVAKPLKELGVAADATIHGFRSTL 350 Query: 344 STALN-EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 E P +VIEAALAH+ +E +AY R D LE+RR +M W + D + Sbjct: 351 RDWAGDETDHPREVIEAALAHLVGDETEQAYRRRDALEKRRRLMDDWGTFLTTPDQAA 408 >UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria RepID=B4SNF6_STRM5 Length = 397 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 104/403 (25%), Positives = 175/403 (43%), Gaps = 26/403 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M K LT + DG GL L + +S +K W FRY +R + Sbjct: 1 MGLKINRLTARRVATIT---EPGYHPDGGGLYLQVTASCAKSWVFRYR--FEGKRPEMGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G + L++AR+ ++ ++ DP ++ A TF A + ++ Sbjct: 56 GPLHVIGLAEAREAAGAARKMVQSGQDPLAGRRA--AAVATASIPTFWEAATAYIAEREA 113 Query: 121 SVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 T W R+LE P +GD+ + I+ ++ ++P+ ET R+ QR+ Sbjct: 114 GWTNPKHAGQWTRTLETYAKPVLGDLRVDRIETEHVLAVLRPIWTT-KTETASRVRQRME 172 Query: 180 EVMI----YAQNTGLIDAVPSVNIGKAFEKP----QKKNMPSIRPDQLPQLMHTMRTASI 231 V+ + +G A ++ KP + +N ++ +LP M +R+ Sbjct: 173 AVLDAVTVQKKRSGENPARWRGHLAVILPKPTAVTKVENFAALPYAELPSFMAALRSRHG 232 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 + +LT R A E+D A W +P +RMK +HTVPLS ALA+ Sbjct: 233 --EAARALEFTILTAARTGMTLGATPGEVDLAAGTWTVPGSRMKAKVEHTVPLSTPALAL 290 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-E 350 R+ +FP+ + N+P++ + A LKR G G + HG RS +E Sbjct: 291 ARPRIK----RDLLFPNDLS-NEPLSENAMLALLKRMGY-GYITVHGFRSTFKDWASEMT 344 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 +P D+ EAALAH +++ + AY R +++RR +M WA+ Sbjct: 345 DYPDDLSEAALAHRIRDKAKAAYKRGTMIQKRRELMNSWAEYC 387 >UniRef50_D2QCK7 Integrase family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QCK7_9SPHI Length = 429 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 103/418 (24%), Positives = 174/418 (41%), Gaps = 25/418 (5%) Query: 1 MAR-KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + + L+ +I+ + + D L DG GL L + GSK W FRY PL+ QR KQS Sbjct: 1 MPKARLHLLSSLQIERLQTVETDQMLNDGGGLYLFNRRHGSKEWIFRYSSPLSGQRRKQS 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVR------NSQEAKTNTFLLVAER 113 G YP SL AR L + + ++++ +DP ++ + N +E + V + Sbjct: 61 LGTYPDTSLKQARALASSKRDIISRGLDPIVEMQKHRQIEITNVNKREEYGRNTVKVVFQ 120 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 W + +D D+I R+ E+D+FP IG+ I E+ + + ++ R R Sbjct: 121 AWKRAELQNRKDKGDEIERAFEKDVFPVIGNKVIGEVTRNDIKFVLERPLKRHVNRMANR 180 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKK-NMPSIRPDQLPQLMHTMRTASIS 232 L + + YA++ L P+ + K ++K + +L L + + + Sbjct: 181 LLSDLKQFFGYAEDEELTHQDPTRRLIKDRVGGKEKSRQRYLDQKELKLLAGLLPVSGLK 240 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 + L L T R E ARW +D+ + IP+ K H V LSD AL L Sbjct: 241 AEYQHLIWLLLATGCRVNEILRARWSHVDWENRFFHIPSELSKNTLKHVVFLSDFALWHL 300 Query: 293 EMMKPLSGGREFIFPSRIKPN----------------QPMNSQTVNAALKRAGLGGVLVS 336 +K + E+I P+R + + +Q VN G V Sbjct: 301 ARLKA-TQTTEWIVPNRSGTGPITRQVLTKQVTDRQQKTLGNQRVNNPQALILPNGRWVI 359 Query: 337 HGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 H LR A T + E G P +I+ L ++++ Y R+ + ++ + Sbjct: 360 HDLRRTAGTLMQEIGILPYIIKKCLNQKTEDKIIETYQRAALTDHQQEAFHKLGSYLD 417 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteob... 501 e-140 UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepI... 491 e-137 UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX 466 e-130 UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio ... 460 e-128 UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobact... 460 e-128 UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio s... 458 e-127 UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronos... 451 e-125 UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp... 451 e-125 UniRef50_Q2T016 Site-specific recombinase, phage integrase famil... 449 e-125 UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobac... 445 e-123 UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root Rep... 445 e-123 UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio... 444 e-123 UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4S... 444 e-123 UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 Re... 441 e-122 UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophil... 441 e-122 UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria... 441 e-122 UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus p... 441 e-122 UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacter... 441 e-122 UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammapro... 439 e-121 UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromon... 437 e-121 UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomo... 437 e-121 UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio R... 432 e-120 UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VM... 432 e-119 UniRef50_D0W4G5 Site-specific recombinase, phage integrase famil... 431 e-119 UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteria... 431 e-119 UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID... 426 e-118 UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepI... 425 e-117 UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfo... 423 e-117 UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammapro... 423 e-117 UniRef50_B4X5T7 Site-specific recombinase, phage integrase famil... 420 e-116 UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae R... 420 e-116 UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas flu... 419 e-115 UniRef50_C0N6F7 Site-specific recombinase, phage integrase famil... 419 e-115 UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellacea... 418 e-115 UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillu... 418 e-115 UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 417 e-115 UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella fer... 417 e-115 UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli R... 417 e-115 UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_... 417 e-115 UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria Re... 416 e-115 UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomon... 415 e-114 UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophi... 415 e-114 UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochl... 414 e-114 UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter ... 413 e-114 UniRef50_A6QCY9 Site-specific recombinase, phage integrase famil... 413 e-114 UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacte... 412 e-113 UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea... 411 e-113 UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobac... 410 e-113 UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholde... 409 e-113 UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp.... 409 e-113 UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae R... 408 e-112 UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_A... 408 e-112 UniRef50_B7I6Z3 Site-specific recombinase, phage integrase famil... 408 e-112 UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thio... 407 e-112 UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_S... 407 e-112 UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadacea... 407 e-112 UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enter... 406 e-112 UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=... 404 e-111 UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV 404 e-111 UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157... 402 e-110 UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. ... 401 e-110 UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria ... 401 e-110 UniRef50_Q4K6S7 Site-specific recombinase, phage integrase famil... 399 e-110 UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria R... 399 e-109 UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobac... 399 e-109 UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacte... 398 e-109 UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae ... 397 e-109 UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholde... 397 e-109 UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID... 397 e-109 UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria Rep... 397 e-109 UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTA... 396 e-109 UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetoba... 396 e-109 UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria ... 396 e-108 UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovoran... 395 e-108 UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholde... 395 e-108 UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingell... 393 e-108 UniRef50_B9D1P3 DNA integration/recombination/inversion protein ... 392 e-107 UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriace... 392 e-107 UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola... 391 e-107 UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillu... 391 e-107 UniRef50_B6BKY5 DNA integration/recombination/inversion protein ... 390 e-107 UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_P... 389 e-106 UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BV... 389 e-106 UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaprote... 388 e-106 UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalole... 388 e-106 UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5... 387 e-106 UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobac... 387 e-106 UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomo... 386 e-106 UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804... 386 e-106 UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=... 386 e-106 UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas inter... 384 e-105 UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID... 383 e-105 UniRef50_A4VPC8 Site-specific recombinase, phage integrase famil... 383 e-105 UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP13... 382 e-104 UniRef50_A7H0X5 DNA integration/recombination/inversion protein ... 381 e-104 UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium ... 381 e-104 UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombina... 380 e-104 UniRef50_C8NCE3 Phage integrase family site-specific recombinase... 379 e-103 UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix chol... 379 e-103 UniRef50_Q0C1T8 Site-specific recombinase, phage integrase famil... 378 e-103 UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonad... 377 e-103 UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacte... 377 e-103 UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, pha... 376 e-103 UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumann... 374 e-102 UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepI... 374 e-102 UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrop... 374 e-102 UniRef50_B9NUX0 Site-specific recombinase, phage integrase famil... 374 e-102 UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion p... 374 e-102 UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C... 373 e-102 UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Si... 373 e-102 UniRef50_B8F737 Phage integrase family site specific recombinase... 372 e-101 UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IG... 371 e-101 UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 R... 370 e-101 UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales ... 370 e-101 UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZ... 370 e-101 UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria ... 370 e-101 UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria ... 369 e-101 UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis ... 369 e-100 UniRef50_A7JZW2 Site-specific recombinase, phage integrase famil... 369 e-100 UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni C... 368 e-100 UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydroba... 367 e-100 UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root Rep... 365 1e-99 UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 365 2e-99 UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp... 365 2e-99 UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enteroba... 364 4e-99 UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butz... 364 5e-99 UniRef50_D0CDZ4 DNA integration/recombination/inversion protein ... 361 3e-98 UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 361 3e-98 UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE4... 360 4e-98 UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatu... 360 4e-98 UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcu... 360 7e-98 UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Vermineph... 355 2e-96 UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0... 354 3e-96 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 354 4e-96 UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EV... 353 7e-96 UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobact... 352 1e-95 UniRef50_A7H3V7 Putative site-specific recombinase, phage integr... 351 2e-95 UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepI... 350 5e-95 UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJ... 350 6e-95 UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphil... 349 1e-94 UniRef50_A6Q4N1 Site-specific recombinase, phage integrase famil... 348 2e-94 UniRef50_C8PFJ4 DNA integration/recombination/inversion protein ... 347 5e-94 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 344 3e-93 UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3... 343 6e-93 UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteur... 343 7e-93 UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family... 343 8e-93 UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio... 342 1e-92 UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=... 342 2e-92 UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphi... 342 2e-92 UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=... 342 2e-92 UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family... 342 2e-92 UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium ... 341 3e-92 UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO 341 4e-92 UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM40... 340 5e-92 UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacte... 340 7e-92 UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepI... 340 7e-92 UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuro... 340 8e-92 UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family... 338 2e-91 UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=... 335 1e-90 UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=... 335 2e-90 UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillu... 335 2e-90 UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP... 335 2e-90 UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresis... 335 2e-90 UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ... 334 3e-90 UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1... 334 4e-90 UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RK... 333 5e-90 UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus... 333 9e-90 UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter a... 332 1e-89 UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU 332 1e-89 UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1... 331 3e-89 UniRef50_C9M6R5 Site-specific recombinase, phage integrase famil... 331 4e-89 UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9... 330 4e-89 UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholde... 330 6e-89 UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus t... 329 1e-88 UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobac... 329 1e-88 UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QA... 329 1e-88 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 328 2e-88 UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurel... 328 2e-88 UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium ... 328 2e-88 UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria Rep... 328 3e-88 UniRef50_B2TTV9 Site-specific recombinase, phage integrase famil... 328 3e-88 UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus... 326 9e-88 UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydroba... 326 1e-87 UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integras... 326 1e-87 UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12... 325 1e-87 UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacte... 325 2e-87 UniRef50_B5J5X2 Site-specific recombinase, phage integrase famil... 324 3e-87 UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter... 324 3e-87 UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacteriu... 324 4e-87 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 323 8e-87 UniRef50_B3AX37 Site-specific recombinase, phage integrase famil... 323 1e-86 UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaprot... 322 1e-86 UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucle... 322 1e-86 UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111... 322 2e-86 UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 ... 321 2e-86 UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacteriu... 321 3e-86 UniRef50_D1Y3S1 Site-specific recombinase, phage integrase famil... 321 4e-86 UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=... 320 7e-86 UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultu... 318 2e-85 UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella si... 318 2e-85 UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepI... 317 4e-85 UniRef50_C6E138 Integrase family protein n=1 Tax=Geobacter sp. M... 317 5e-85 UniRef50_B9R123 Site-specific recombinase, phage integrase famil... 316 8e-85 UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducen... 316 9e-85 UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family... 316 1e-84 UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas put... 315 1e-84 UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria ... 315 2e-84 UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae... 315 2e-84 UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter... 315 2e-84 UniRef50_Q0BR52 DNA integration/recombination/inversion protein ... 315 2e-84 UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crun... 315 2e-84 UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium me... 314 4e-84 UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadec... 313 6e-84 UniRef50_Q7MPT5 Site-specific recombinase, phage integrase famil... 313 7e-84 UniRef50_D1R6D1 Putative uncharacterized protein n=1 Tax=Parachl... 313 7e-84 UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3... 312 1e-83 UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter l... 311 3e-83 UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia... 311 3e-83 UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltic... 311 4e-83 UniRef50_B5J7B6 Site-specific recombinase, phage integrase famil... 310 5e-83 UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodoba... 310 6e-83 UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis ... 309 1e-82 UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria... 309 1e-82 UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas inter... 307 4e-82 UniRef50_A3VAJ4 Site-specific recombinase, phage integrase famil... 307 7e-82 UniRef50_B5J8B6 Site-specific recombinase, phage integrase famil... 305 2e-81 UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella fer... 305 2e-81 UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein ... 305 2e-81 UniRef50_B5QDA8 Phage integrase family protein n=1 Tax=Salmonell... 304 4e-81 UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobial... 303 7e-81 UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8... 303 9e-81 UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp... 302 1e-80 UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirill... 300 5e-80 UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaprot... 300 6e-80 UniRef50_A1WQF8 Phage integrase family protein n=1 Tax=Vermineph... 300 9e-80 UniRef50_B9KC61 Site-specific recombinase, phage integrase famil... 299 1e-79 UniRef50_A6X585 Phage integrase family protein n=1 Tax=Ochrobact... 298 2e-79 UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovor... 298 2e-79 UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodoba... 298 2e-79 UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteri... 298 3e-79 UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 297 4e-79 UniRef50_A3JW30 Site-specfic recombinase, phage integrase family... 297 5e-79 UniRef50_A4AB16 Phage integrase n=1 Tax=Congregibacter litoralis... 297 5e-79 UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacter... 297 7e-79 UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobac... 296 8e-79 UniRef50_D2QCK7 Integrase family protein n=1 Tax=Spirosoma lingu... 296 1e-78 UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobact... 295 2e-78 UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6... 295 2e-78 UniRef50_B6JJF3 Phage integrase family protein n=2 Tax=Bradyrhiz... 294 3e-78 UniRef50_A1ANR7 Phage integrase family protein n=1 Tax=Pelobacte... 294 5e-78 Sequences not found previously or not previously below threshold: >UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteobacteria RepID=INTA_ECOLI Length = 413 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 413/413 (100%), Positives = 413/413 (100%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF Sbjct: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT Sbjct: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE Sbjct: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM Sbjct: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG Sbjct: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA Sbjct: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG Sbjct: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 >UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepID=C9NQJ4_9VIBR Length = 415 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 217/413 (52%), Positives = 296/413 (71%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ T LT T+IK++KPKD +Y L+DGDGL L IK +GSK W YYRP ++R S Sbjct: 1 MAKTTVKLTPTKIKSSKPKDKEYNLFDGDGLRLRIKPNGSKHWILNYYRPSNRKRANLSL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++ARK+ E+K LLA+ IDPQE +K + +TF+ V +W+ +KK Sbjct: 61 GKYPDLSLANARKMTLEAKELLAQGIDPQEERKRHQLEQKANHEHTFINVTTKWFEIKKD 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 VT DYA DIWRSLE IFP + D+ + +I A +++ ++P++A+G+LETV+RL QR+NE Sbjct: 121 DVTPDYAVDIWRSLELHIFPQLSDVPVRDITAPQVIELLKPIEAKGSLETVKRLAQRLNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA N GL+ A P I AF+KP+K+NM ++ P +LP+LM + ASI +TRCL Sbjct: 181 VMNYATNCGLVQANPLTGIKAAFKKPKKENMAALTPAELPELMGAIANASIKRTTRCLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRP+EA+ ARW+EID++ W IP RMK R+H +PL++ L +LE++KP+SG Sbjct: 241 WQLHTMTRPSEASGARWEEIDWDEKVWTIPPERMKKRREHRIPLTEQMLELLEVIKPISG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 REFIFPS P +P NSQT N ALKR G G LVSHGLRS+AST LNE+GF PD+IEAA Sbjct: 301 HREFIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFEPDLIEAA 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 LAH D N+VR AYNR+DYLE+RRPMM WW+ ++ A GS+ +T + +++++ Sbjct: 361 LAHADDNQVRSAYNRTDYLERRRPMMCWWSGHIEEAAKGSLSVTGMKQLKVIN 413 >UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX Length = 394 Score = 466 bits (1199), Expect = e-130, Method: Composition-based stats. Identities = 153/391 (39%), Positives = 227/391 (58%), Gaps = 2/391 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD ++K AKPKD Y+L DG G+ LLI ++GSK W+ +Y + S G YP V+ Sbjct: 3 LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR+ R+E++ LLA DP E +KE+ Q + NTF +A W K + Y Sbjct: 61 LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+I + E+DIFP IG I EIK L++A++ ++ RGALE +R++ QR EV YA Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 TG D P+ ++ A P+K + P + ++LP ++ + + S+ T+ +LT Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E ARW++IDF W+IPA MKM R H VPLS+ + + + ++P+S +F Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI 300 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 R P +P++ +++N ++ G G L HG R ST L+E+GF IE LAHVDKN Sbjct: 301 GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +R YN + YL+ RR MMQW+AD + + S Sbjct: 361 SIRGTYNHALYLDGRREMMQWYADYIDSLSS 391 >UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MWW9_VIBHB Length = 410 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 195/404 (48%), Positives = 274/404 (67%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K +PL+ T++K K + ++ + DGDGL L I +G+K W F Y P TK+R Sbjct: 1 MAKKIRPLSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+ AR+ R + L+AK IDP+ H+ Q + A +T L VA+ W+ +K+ Sbjct: 61 GKYPDVSLATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQH 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SV+ DYADDIWRSLE IFP +G + + EI A T++ ++P++A+G+LETV+R+CQR+NE Sbjct: 121 SVSSDYADDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA N G ++A P NI + F+KP+ K+M +I P L L+ +M +I + TRC F Sbjct: 181 VMTYAVNCGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +QL T+TRP+E +A W+EIDF W IP +MKM RDH +PLSD + +L+ MKP+S Sbjct: 241 FQLHTLTRPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISF 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +++FPS K MNSQ+VNAA+KRAG G LVSHG+RSI STALNE+GF D IE Sbjct: 301 EHKYVFPSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELC 360 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 LAHVDKN +R YN ++YLE+RR +MQWW++ + +A + +L Sbjct: 361 LAHVDKNTIRDIYNNAEYLEERRNVMQWWSEYIISASKNTFILA 404 >UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobacteria RepID=B7MX56_ECO81 Length = 419 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 225/413 (54%), Positives = 294/413 (71%), Gaps = 1/413 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MARKT PLT +IKAA+P +Y L DG GL LL+K SGSKLW+F YYRP K+R SF Sbjct: 7 MARKTHPLTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSF 66 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-K 119 G+ VSL+DARK R+E + L++ DPQ+H++++ + NTF VA W+ VK Sbjct: 67 GSLEDVSLADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKIS 126 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 ++ + DIWRSL++ +FP IG+ I + A V+ + P++ RG LET++R+ QR+N Sbjct: 127 QNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVN 186 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 EVM YA N+GLIDA P++N+ KAF P KK+MP+IRP+QLP+LM + ++ TR L Sbjct: 187 EVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLI 246 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 WQLLT+TRPAEA+ RWDEI+ +A +W IPA RMKM RDH +PLS A+A+LE MKP+S Sbjct: 247 EWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPIS 306 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 R ++FPS P QPMNSQT NAAL+R G GVLVSHGLR+I STA NEEGF PDVIEA Sbjct: 307 HHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEA 366 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 ALAHVD NEVRRAYNRS+Y+E+R +M+WW + V+AA +G + + IR V Sbjct: 367 ALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGEFVEAAATGVTLASGKRGIRAV 419 >UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L516_9DELT Length = 417 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 144/412 (34%), Positives = 226/412 (54%), Gaps = 10/412 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +KT PLTD I+ AK D +++DG GL L + +G KLW+F+Y + + Sbjct: 1 MPKKTIPLTDVAIRNAKAADKPVKMFDGAGLFLQVTPTGGKLWRFKY--LFDGKEKLLAL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ---EAKTNTFLLVAERWWNV 117 G +P V L AR+ R E++ L+A+ +DP E +K+ +++ NTF +VA W Sbjct: 59 GKWPDVGLKMARQRRDEARALVAQGVDPSEKRKQDRADAEGQAVENANTFAVVARDWHAK 118 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + +E +A I +E+ +FP G+I IT ++A ++ ++ ++ +G ET +RL Q Sbjct: 119 QVKVWSEGHAAKILARMEQHLFPVFGNIPITTLRAPAILPTLRDIEDKGNHETAKRLRQY 178 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTR 236 V +A +TG+ + ++ A + N P+I P + QL+ + S T Sbjct: 179 CEAVFTFAISTGIAERNVGADLRGALAPCRATNRPAIIDPKGVAQLLRAIDGYQGSPVTV 238 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNAS---EWKIPAARMKMNRDHTVPLSDGALAILE 293 L RP E +A W EID +A+ W IPA +MKM RDH VPLS A+ I+ Sbjct: 239 AALRLAPLVFVRPGELRQAEWSEIDLDAADGPRWSIPAEKMKMRRDHVVPLSKQAVDIIT 298 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGF 352 + L+G ++FP + M++ +NAAL+R G G + +HG R++AST LNE G+ Sbjct: 299 EIYSLTGQDRYLFPCNRTKGRCMSNMALNAALRRMGYEQGEMCAHGFRAMASTLLNELGW 358 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 D+IE LAH ++N +R AYNR++YL +RR MMQ WAD + +G+ V Sbjct: 359 NSDLIERQLAHAERNSIRAAYNRAEYLPERRRMMQAWADYLDMLKAGAKVTP 410 >UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR55_9DELT Length = 401 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 231/396 (58%), Gaps = 8/396 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD ++K KP Y++ D DG+ L + +G KLW+F+Y + + G YP VS Sbjct: 3 LTDVQVKGLKPGSTKYRVKDKDGMYLEVTPAGGKLWRFKYR--FNGKNKLLALGKYPDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ + ++ +A+ DP +K + + NTF + + WW KK++ T +A Sbjct: 61 LAKAREKLSIARQQIAEGKDPAYIKKIEKAEKE----NTFKAITDEWWRAKKSTWTPGHA 116 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + ++R LE D+ P + D I EI A +++ ++ +ARG +T RL Q + + I+A Sbjct: 117 EKVYRRLEIDVLPYLKDRPIKEITAREILEVLKKAEARGVTDTAYRLAQMCSNIFIFALA 176 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G + P+ +I KA K N P+I PD++ +L+ + + S + C +L Sbjct: 177 SGRAEHNPAADISKALTAHPKTNRPAITEPDEIKELLLAIDGFTGSYTVLCALKIAILVF 236 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E +A W EI+F+ + W +P+ RMKM R+H VPLS A+ IL+ + PL+G ++F Sbjct: 237 VRPGELRQASWAEINFDEALWYVPSQRMKMKREHLVPLSGQAVKILKDIHPLTGAGHYVF 296 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 PS ++PM+ T+NAAL+R G L +HG R++AST L+E G+P D+IE LAHVD Sbjct: 297 PSIRTNSRPMSENTLNAALRRLGYPQEKLCAHGFRTMASTRLHEMGWPSDIIEFQLAHVD 356 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 +N++R YNR++YL+QR MMQ WAD + +G Sbjct: 357 QNKIRGIYNRAEYLDQRTKMMQAWADYLDDLKTGKT 392 >UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ08_9PROT Length = 418 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 145/400 (36%), Positives = 224/400 (56%), Gaps = 4/400 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTDT IK AKP+ Y++ DG G+ + +K +G+K W+ Y ++ + G YP Sbjct: 1 MKLTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYR--FADKQKTLALGVYPD 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V+L+DAR R E++ LLA DP ++ Q + ++ A +N+F L+A + ++K + + Sbjct: 59 VTLADARDRRNEARKLLANGADPGAVKQSQKKQAKIAASNSFELIAREFHSLKTPMWSTN 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A D ++LER+IFP G+ I+EI A ++ A++ +++R A E R+ QR+ V YA Sbjct: 119 HAADWIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEVAARVLQRVRAVCAYA 178 Query: 186 QNTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 TG P+ I A +P+ K+ ++ +LP + + T+ +L Sbjct: 179 IATGRARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLML 238 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T R E A+W E D +A WKIPA RMK H VPL+ A+ IL + PL+G E Sbjct: 239 TFVRTGEVRGAKWCEFDLDAKLWKIPAERMKSREPHIVPLAKQAIEILGELHPLTGHGEH 298 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 +FP+R + ++ TV ++R G G + HG R+IAST LN G PDVIEA LAH Sbjct: 299 LFPNRTGNGKVISENTVLKVIERLGYKGRMTGHGFRTIASTYLNGVGMIRPDVIEAQLAH 358 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 + N R AYNR++Y+E R MMQ+WAD + A ++G + Sbjct: 359 TEANATRAAYNRANYMEYRAAMMQFWADTLDAMEAGITLP 398 >UniRef50_Q2T016 Site-specific recombinase, phage integrase family n=30 Tax=Bacteria RepID=Q2T016_BURTA Length = 438 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 144/401 (35%), Positives = 219/401 (54%), Gaps = 6/401 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++T PLTD +++ AKP + Y+L DG GL L + +GS+ W+ +Y + SF Sbjct: 41 MPKQTDPLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYR--FDGKEKLASF 98 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+ AR+ ++ LLA DP E ++E R +++F VA W+ +K Sbjct: 99 GVYPEVSLAQARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKD 158 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 TE YA+ + SLE D FP IG + +I+A +++ V+ ++ARG ET +R+ QR Sbjct: 159 GWTEVYANKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRA 218 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQ---KKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 V Y TG P+ +I + K+M ++P ++PQLM + S T+ Sbjct: 219 VFQYGIMTGRCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQL 278 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + LT TR E A WDE D A+EW+IP RMKM H VPLS AL +L ++ Sbjct: 279 ALRFMALTFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRE 338 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 L+G + +F S + +++ T+ AL R G + HG R +A+T L E G+ DV+ Sbjct: 339 LNGNQRLVFYSVQGRS-HISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVV 397 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + LAH ++N+V AY ++YL +RR MMQ WAD + + Sbjct: 398 DRQLAHAERNQVTAAYVHAEYLPERRKMMQHWADYLTQTAN 438 >UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobacillus minor 202 RepID=C8KXV2_9PAST Length = 406 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 184/403 (45%), Positives = 252/403 (62%), Gaps = 3/403 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K PL DTEIK AKP+D Y + DG GL L++ +GSK W+F YYRP++K+R K + Sbjct: 1 MAKKVHPLVDTEIKKAKPEDKPYTMTDGQGLFLIVSPTGSKSWRFNYYRPISKKRAKIAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA++LS AR LR E K LLA IDPQEH K+ + K NT +AE+W K+T Sbjct: 61 GMYPAITLSKARALRDEYKHLLANGIDPQEHCKQLELQKLQFKQNTLFAIAEKWKQKKET 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V E WR LE+ IFP +GD+ I+EI L ++PV RG T + Q +NE Sbjct: 121 EVKEKTLKPRWRMLEKYIFPELGDLPISEISPLRLSNTIRPVFDRGIANTGLVIIQMVNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 +M++A N G+I+ N+ F K K+ P+IRP++LP+ M +R +++ + + L Sbjct: 181 IMVFAVNLGIIEFNKCSNVASTFNVKKTTKHQPTIRPEKLPEFMSALRDSAVDLVVKLLI 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 + LLT+ RP EAA A+WDEI+F+ + W IPA RMKM + TVPLS A+ +L +K ++ Sbjct: 241 EFSLLTMVRPNEAANAKWDEINFDDALWHIPAERMKMKKAFTVPLSSQAIKLLNKLKQIT 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE--EGFPPDVI 357 G FIF S P +PM+S T NAA++R G G L SHGLRSIAST L+E ++I Sbjct: 301 GRSRFIFQSPRAPQKPMSSVTANAAIRRIGYNGKLTSHGLRSIASTYLSEKFIDINVEII 360 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 EA L+H KN +R AYNRS YLEQR+ +M W V+ + S Sbjct: 361 EACLSHQGKNPIRNAYNRSTYLEQRKLLMADWGQFVEESMKSS 403 >UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root RepID=A1BGX1_CHLPD Length = 419 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 146/422 (34%), Positives = 228/422 (54%), Gaps = 14/422 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++ PL+D ++ AKP + DY+L DG GL LL+ +SG KLW+F+Y ++ + Sbjct: 1 MPKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYR--FDGKQKLLAL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++ARK R E++ LLA + DP E +K + ++F LVA W+ Sbjct: 59 GQYPEISLANARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDP 118 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + +A + LE+D+FPAIG ++EI A + + ++ARGA+ET R+ + Sbjct: 119 VWSPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQ 178 Query: 181 VMIYAQNTGLIDAVPSVNIG--KAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRC 237 V YA TG ++ PS + + F K + ++ +I P +L L+ + + + Sbjct: 179 VFRYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKS 238 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 L RP E W +IDF + W IPA RMKM + H VPLS +L+IL+ + P Sbjct: 239 ALQLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHP 298 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE-EGFPPD 355 +G ++F R +PM++ ++NAAL+ G + HG R+ A T L+E GF D Sbjct: 299 ATGHGRYVFTGRGS--RPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVD 356 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG-----SIVLTHLSKIR 410 +IE LAH ++ RAYNR+ +L+ RR MMQ WAD + + +G S VL K + Sbjct: 357 LIEHQLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAGVKMPASGVLPLTRKKK 416 Query: 411 LV 412 + Sbjct: 417 AL 418 >UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2J0_9DELT Length = 420 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 139/408 (34%), Positives = 204/408 (50%), Gaps = 17/408 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ--RTKQSFGAYPA 65 LTD +++ K +D +L+DG GL L + SG K W+F+Y P + + S G YP Sbjct: 3 LTDAQVRNVKAEDKTRRLFDGGGLYLEVAPSGGKWWRFKYRFPGQGKIQEKRLSLGTYPG 62 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L +AR R E + +A+ IDP ++ A +F VA W T Sbjct: 63 VGLKEARAKRDEMRRQIAQGIDPANLRRSTR--GSGALAGSFEAVARLWHRNNSTDWAPS 120 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 ++ + R LE +FP +G+ + +I A L+ ++ ++ G ET RR+ +V YA Sbjct: 121 HSTRLIRRLEAHVFPYLGNRPVGDITAPDLMNVLERIKNSGHTETARRIQTICGQVFRYA 180 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLL 244 G + PS + K KNM +I P ++ +L+ + + RC L Sbjct: 181 VQKGFAEYDPSSALKGCLGKTTAKNMATITEPAEVGRLLQAIDEYPGTQVVRCALQLAPL 240 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD----------HTVPLSDGALAIL-E 293 R E ARWDE D EWKIP RMKM +D H VPL+ A+ IL E Sbjct: 241 FFVRSGELRNARWDEFDLVNREWKIPVERMKMRQDEKRARQGQVGHIVPLATQAVKILEE 300 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGF 352 ++PL+G +FP ++ ++ T+ AL+R G G + HGLR +AST L+ GF Sbjct: 301 ELRPLTGRCALVFPGLRSRDRAISDATLTNALRRMGYTGDEMTIHGLRHMASTLLHGLGF 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 VIE LAH D+N +R YN++DYLE+RR MMQ WAD + +G Sbjct: 361 QSLVIERQLAHKDRNRIRGVYNQADYLEERRRMMQSWADYLGQLKAGK 408 >UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4SSF4_AERS4 Length = 404 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 150/406 (36%), Positives = 237/406 (58%), Gaps = 5/406 (1%) Query: 6 KPLTDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 PLTD + AK +L D GL LL+ SG K W+ +Y + K + G Y Sbjct: 1 MPLTDITARQAKWSGKPNGDKLADEKGLFLLVNKSG-KYWKLKYRH--GGKEKKLALGVY 57 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P VSL +AR R E++ ++A+ IDP +K+ S+ N+ ++A W + + Sbjct: 58 PEVSLREARAKRDEARRVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWS 117 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 +A + SLE D+FP +G + ITE+ A +++A++ V+ RGA ET R+ QR++ +M Sbjct: 118 PGHATRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMR 177 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 YA TG P+ ++ A + ++++ P++ +LP+ + ++ +TR + Sbjct: 178 YAIQTGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLM 237 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT+TRP E ARWDE D +EW+IPAARMKM +H VPLS ALA+L+ + L+G E Sbjct: 238 LTMTRPGEVRFARWDEFDMERAEWRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHCE 297 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 +FPS K PM+ T++ A+ R G G+ HG R++AST LNEEGF PDVIE LAH Sbjct: 298 LLFPSERKLTNPMSENTLSYAMGRMGYKGIATPHGFRALASTTLNEEGFDPDVIERQLAH 357 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 ++N+VR AY+R++YL+ RR ++QW AD + +++ + +++ Sbjct: 358 AERNKVRAAYHRAEYLDDRRKLLQWLADFYDSQRGSNVLPVNFNRV 403 >UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P090_AZOSE Length = 402 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 126/402 (31%), Positives = 200/402 (49%), Gaps = 2/402 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD I+ K ++ DG GL L + +G KLW++R+ L + + GAYP VS Sbjct: 3 LTDKAIRGVKGGAKPVKMADGGGLYLEVTPAGGKLWRYRFR--LAGKENVFAIGAYPRVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DARK R E++ L+ + +P ++++ + + NTF VA+ W+ K S ++ + Sbjct: 61 LADARKARDEARDLVKQGFNPSHYRQQAKQAVIDENLNTFAPVADEWYQSKVDSWSKGHR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + L++DI P IG + I I + L ++ + ARGA Q + V A Sbjct: 121 HHVRTILDKDILPRIGKLPIRSITSPLLHDVMKKIVARGATTRAILARQIMGSVFNLAIL 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 T D P+ + + + ++ + + + + + +TR +LT Sbjct: 181 THRADTNPAEPLKRQIARCVTEHHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLTAV 240 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 RP E ARW E D + W IP RMK + H VPLS+ A+ +L+ ++P++G F+FP Sbjct: 241 RPGEVCGARWAEFDIDGQNWTIPKERMKTRKPHIVPLSNQAVDLLKELEPITGDTAFLFP 300 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 S+ Q M +Q++ A+ + G HG R ST LN G+ D IE LAH + N Sbjct: 301 SQGTKTQTMPTQSIRNAVVKLGYADKFSPHGARGTFSTMLNGRGYNSDWIERQLAHDEGN 360 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 VR +YN YL +RR M+Q WADL+ +G+ VL Sbjct: 361 RVRASYNHMQYLPERRKMLQEWADLLDELRTGAKVLPFQRSA 402 >UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophilus influenzae RepID=Q4QNN7_HAEI8 Length = 403 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 183/403 (45%), Positives = 250/403 (62%), Gaps = 2/403 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K KPL DTEIK AK + Y L DG GL L+I +GSK W+F YYRP+TK+R K S Sbjct: 1 MAKKVKPLVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA++LS AR+LR + + LLA IDPQE+ K+ + + NTF ++ +W K + Sbjct: 61 GLYPAITLSKARELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVS 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + WR+LE+ FP +GD I EI L V P+ RG T + + +NE Sbjct: 121 EIKSVTLKSRWRTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N G+I+ +N+ KAF + + P+IRP++LP+ M +R + I + + L Sbjct: 181 IMNFAVNKGIIEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + LLTITRP+EAA A+W+EIDF S W IPA RMKM + T+PLS L IL +K +SG Sbjct: 241 FSLLTITRPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE--EGFPPDVIE 358 FIF S+ P +P++S + NAA+KR G L SHGLRSIAST L+E +++E Sbjct: 301 RSRFIFQSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 A L+H KN+VR AYNRS YLEQR+P+M W D V+ SI Sbjct: 361 ACLSHQSKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMKKSI 403 >UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria RepID=A4JAY4_BURVG Length = 405 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 149/401 (37%), Positives = 227/401 (56%), Gaps = 3/401 (0%) Query: 4 KTKPLTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 KTKPLTD + + A+ +A +L+DG GL L ++SSGSK W+ +Y + +FG Sbjct: 2 KTKPLTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYR--FNGKENLLTFGD 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YPA SL+DAR R E+K LLA+ +P + + + A NTF VA W+ ++ + Sbjct: 60 YPATSLADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATW 119 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + +A+ + + L+R++FP IG I+ I A L+ V+ ++ R A ET R+ Q +V Sbjct: 120 SASHANRVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVF 179 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 YA T + PS ++ A + K+M + +LP+L+ ++ + TR + Sbjct: 180 RYAVATSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFL 239 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LT R E +A W EID EW+IPA +MKM R H VPL++ A+A+L ++ L+G R Sbjct: 240 ALTFVRTIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGHR 299 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++FP+ +P Q M+ T+ AL R G + HG R +AST LNE+GF D IE LA Sbjct: 300 RWLFPNSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLA 359 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 H +++ VR AYN ++YL +R MMQWWAD + I+ Sbjct: 360 HSEQDGVRAAYNHAEYLSERHRMMQWWADYLDKQSGAQIIP 400 >UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus parasuis SH0165 RepID=B8F555_HAEPS Length = 405 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 181/402 (45%), Positives = 246/402 (61%), Gaps = 2/402 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+K L DTEIK AK KD Y L DG GL LL+ +GSK W+F YY+P+TK+RTK + Sbjct: 1 MAKKVHQLVDTEIKKAKAKDKPYTLTDGGGLFLLVSITGSKSWRFNYYQPITKKRTKMAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+LS AR LR E K LLA DIDPQ++ K + + + NTFL +AE+W K Sbjct: 61 GMYPTVNLSKARALRDEYKKLLADDIDPQQYIKNKQQEKLQETQNTFLAIAEQWKQKKSA 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + WR LE FP +G+ISIT IK + + V P+ RG T L Q INE Sbjct: 121 EIKPATLKNHWRRLELYAFPTLGNISITMIKPLQVTELVTPLFLRGVNSTGVLLLQTINE 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N G+I+ +I F K + ++ P+IRP+ LP+ +R + + + L Sbjct: 181 IMRFAVNRGIIEFNKCADIADTFVKSKSEHHPTIRPEHLPEFFAALRNSHADLIIKSLIE 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 + LLTI RP+EAA A+W EIDF S W IPA RMKM + T+PLS A+ IL+ ++ ++G Sbjct: 241 FSLLTIARPSEAANAKWAEIDFEQSLWNIPAERMKMKQPFTIPLSIQAVKILKKLQVITG 300 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE--EGFPPDVIE 358 +IF S KP+QP+ Q N +K+ G G L SHGLRSIA+T L+E ++IE Sbjct: 301 RSLYIFQSIKKPSQPIGKQIANNTIKQMGYKGKLTSHGLRSIANTYLSEKFIDLNVEIIE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 A L+H +N+VR AYNRS YLEQR+P+M W V+ + S Sbjct: 361 ACLSHKSQNQVRNAYNRSTYLEQRKPLMNDWGQFVEESMKSS 402 >UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacteria RepID=B4RZR6_ALTMD Length = 412 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 150/412 (36%), Positives = 217/412 (52%), Gaps = 11/412 (2%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTD +IK A+ D L D GL LL+K +GSK W+ +Y ++ + G YP Sbjct: 1 MPLTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYR--FQGKQKTLAIGVYPE 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL DAR+ +E++ L DIDP ++E+ S ++ F A WWN +K +E Sbjct: 59 VSLKDAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEG 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A IW L + +G I EI +++ VQ ++ RGAL+ +R+ Q I V +A Sbjct: 119 HAARIWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS--ISMSTRCLFMWQL 243 TG++ P+ + EK + + S+ ++LPQ + + + T+ + Sbjct: 179 VQTGVLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLV 238 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 T RP E A ARWDE D W+IPA RMKM DH VPLS ALA+LE KP S E Sbjct: 239 HTFVRPGELAGARWDEFDLEEKLWRIPAHRMKMKSDHIVPLSRQALAVLENTKPFSARFE 298 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGG------VLVSHGLRSIASTALNEEGFPPDVI 357 F+FPS + M+ T+ A+ R G G HG R+ AS+ LNE GF PD I Sbjct: 299 FVFPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSILNETGFNPDAI 358 Query: 358 EAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 E L+H+++N VR AY + + YLE+R+ MMQWW+D + + + V K Sbjct: 359 ERQLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDSLKNNGNVTPIFKK 410 >UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammaproteobacteria RepID=A0KW55_SHESA Length = 411 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 176/408 (43%), Positives = 261/408 (63%), Gaps = 1/408 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R T LT + AK + Y+L DG L L ++++G K W+FRY RP T + T Sbjct: 1 MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YP VSL++AR E++ LA+ IDPQ + E + T +A+ W + K+ Sbjct: 60 GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 S+ + WR LE FP +G I+I+ + A + A++P++ +G LETV+R Q +NE Sbjct: 120 SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M ++ N+G I A P I + F K + +++ +++P +L +L+ T+ A++ ++TRCL Sbjct: 180 IMNFSVNSGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIE 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRP EAA ARW+EIDF+A W IP +RMKMNR+H +PL++ L ILE +KP+S Sbjct: 240 WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISE 299 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 +F+FPS P + + +T+N AL R GL G HGLRS+AST LNE+GF DVIEAA Sbjct: 300 QSQFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA 359 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 LAHVDKN++R AYNR+ YLE+R +M+WW++ + A GS+ +T S+ Sbjct: 360 LAHVDKNQIRSAYNRTTYLERRTKLMEWWSNHIATAAVGSLSVTAGSR 407 >UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromonadales RepID=A1SRI6_PSYIN Length = 416 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 167/413 (40%), Positives = 246/413 (59%), Gaps = 1/413 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ T PL+DT+I+ K D L DG GL L IK +GSKLWQ R+ +P+ K+ F Sbjct: 1 MAK-TTPLSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGF 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 GAYPA+SL++ARKLR + LLA+ I+P+ + +++ + NTF +V W +K + Sbjct: 60 GAYPAISLANARKLREAANELLAQGINPKAQRDSEIKEKELILNNTFEMVTAAWIKLKAS 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V D I +L I P IG ITEI A ++A++P++A+G E + R CQ +N+ Sbjct: 120 EVKPDSLKTISTTLTNHILPRIGKCPITEITAPMAIEALRPIEAKGNHEVIARACQYLNQ 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M YA N G+I + P I F + N P ++P++LPQL+ + TA+I TR L + Sbjct: 180 IMRYATNLGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIATANIKKITRNLIL 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 WQL T+TRPAE A A+W+EID+ + W IP R+K H +PL+ LAILE K +SG Sbjct: 240 WQLHTMTRPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISG 299 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 ++IFP+ PN N + N A KR G G +HGLR +A T L+++G + EA Sbjct: 300 NSDYIFPADRNPNAHANKASANMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEAC 359 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 L+H N V ++YN S YL QR +M WW++ ++ A G+I + +++VG Sbjct: 360 LSHKVGNSVSQSYNHSTYLNQRIKIMAWWSNYIEEASYGNISMAGSKGVKVVG 412 >UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomonas eutropha C91 RepID=Q0AH02_NITEC Length = 393 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 151/391 (38%), Positives = 218/391 (55%), Gaps = 4/391 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD+ I+AAKPK+ Y+L DG+GLTLLI GSK W++RY ++ + S G YP Sbjct: 1 MKLTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRY--LFNEKESMLSLGKYPE 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +L+ AR + K +L + I+P H+KE+ R + + N+F VA WW K + TE Sbjct: 59 TTLAQARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTER 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + R +E DIFP IG + + A ++ V VQ+RGAL+ +R+ +VM YA Sbjct: 119 HVAYTLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMRYA 178 Query: 186 QNTGLIDAVPSVNIGKA--FEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 GL + P+ +I A +K +K N I +LP L+ + TR Sbjct: 179 VQHGLSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQLMT 238 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT R +E RW+EI F+ +EW+IP RMKM H VPLSD A+ +L +K L+ Sbjct: 239 LTFIRTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSDPV 298 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 +FPS + + M++ T+ AL R G G + HG R +AST L+E+ F IE LAH Sbjct: 299 LLFPSERRNGKTMSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQLAH 358 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 +++EV AYN + YLEQRR MMQWW + ++ Sbjct: 359 AERDEVSAAYNHALYLEQRRKMMQWWGEYIE 389 >UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio RepID=B8J055_DESDA Length = 402 Score = 432 bits (1113), Expect = e-120, Method: Composition-based stats. Identities = 124/399 (31%), Positives = 207/399 (51%), Gaps = 8/399 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M T LT+ +I+ KP + DG+GL L +G K W+ +Y + + + SF Sbjct: 1 MP-PTNKLTEIKIRNIKPNGKIERFVDGEGLYLETSVAGGKHWRMKYR--VNGKEKRLSF 57 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +P +SL +AR++R E+K L + +DP +K+ + TF +A + +++ Sbjct: 58 GPWPDISLKEAREMRDEAKRQLRESLDPSAEKKKAKQEQA---APTFRDIALEYVEHQRS 114 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + L D++PA G I + ++ ++ ++ R A ET R+ + Sbjct: 115 VWAASHTRTVEGRLALDVYPAFGAKPIAAVTPQDILAMLRKIEERRAFETASRVLGFCSL 174 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLF 239 + YA GL++A P ++ A + K + +I P ++ LM + S+ R Sbjct: 175 IFKYAVTLGLVEADPCRDLRPALKPYAKGQLAAITKPKEVGALMRAIDDYKGSVVVRAAL 234 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 ++ LT RP E W EI+F EW IPA +MK +H VPLS AL +L + P + Sbjct: 235 LFSALTFCRPGEIRHVEWAEINFEREEWTIPAEKMKGRTEHRVPLSRQALEVLHGIMPYT 294 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGFPPDVIE 358 G +++FP+ N+P++ V +AL+ G + +HG RS+AST LNE G PD IE Sbjct: 295 GSAKYVFPTPRSNNRPLSENGVLSALRNMGYTKEQMTAHGFRSMASTLLNELGHRPDAIE 354 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 A LAH +++R YNR++Y+++RR +MQ WAD ++ Sbjct: 355 AQLAHKGADKIRATYNRAEYMKERRNLMQAWADYLEDLK 393 >UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VMW7_9GAMM Length = 419 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 118/405 (29%), Positives = 211/405 (52%), Gaps = 7/405 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ KP + + D GL L + SG + W+ +Y + + + G+YP +S Sbjct: 22 LSDAQVRKIKPLEKKKRYADEKGLYLEVTPSGGRFWRLKYR--FNGRESTLTIGSYPEIS 79 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ R E+++ L +IDP + ++++ + E+ F +A W +K + E Sbjct: 80 LAQARRARDEARIQLYSNIDPNAVKNQRLQQTDES--ILFKSLAMEWMEDRKAVIKETTY 137 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 E+D+FPA+G++ I +IK ++ + ++ARGALE +R + +A Sbjct: 138 LRDLSVFEKDLFPALGNMPIDQIKGKDVLACAKKIEARGALEMAKRSIPLTGRIFRFAIR 197 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 G+++ P+ ++ +A + + K+M + + P + M S + LT Sbjct: 198 KGIMENDPTPHLQEALKPRKVKHMARLDILEFPPFLERMDRYHGSPMIKTAIQLMTLTFV 257 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R AE WDEIDF W+IPA +MKM + H VPLS A+ ++E ++PL+G ++++F Sbjct: 258 RTAELRMMEWDEIDFETKLWRIPADKMKMAQPHIVPLSKQAIELIEQLRPLTGNKQYVFY 317 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 + +PM+S + ++ G G + HG R +AST L+E+G+ D IE LAH N Sbjct: 318 N-HSTAKPMSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRVGN 376 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 V +AYN + +L+ R MMQ W+D + + ++ + V Sbjct: 377 AVSQAYNHAQHLDYRIKMMQEWSDFIDGLR--NKIVPFPKRNEAV 419 >UniRef50_D0W4G5 Site-specific recombinase, phage integrase family n=4 Tax=Neisseria RepID=D0W4G5_NEICI Length = 428 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 138/396 (34%), Positives = 213/396 (53%), Gaps = 7/396 (1%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 L D +I+ AKP + Y+L DG GL L I +SG KLW+F + +R S G YP Sbjct: 23 KMKLNDRQIRNAKPAEKPYKLNDGKGLYLYINTSGGKLWRFDF--ACNGKRKTLSIGKYP 80 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 VSL++AR+ ++ +LA DP E ++++ + A NTF +A RW T E Sbjct: 81 TVSLAEARETAETARRMLAAGQDPSEAKQQEKEERKAAALNTFESIARRWHTDNLTRWKE 140 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 ++A + R E D+FP +G + I EI+ + + + V ARG T ++ + V Y Sbjct: 141 NHAARVLRYFETDVFPVVGAMPIQEIRVNHIKTLLDSVMARGVNNTAEKIREWAGAVFDY 200 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 A L ++ P+ + + N P++ ++L + + A I R M +L Sbjct: 201 AALLELTESNPAHVLRRYIPSVPAGNRPALPREELTEFFCRLLLADIEPQNRIALMLIML 260 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-----DHTVPLSDGALAILEMMKPLS 299 R E RWDEIDF+A W IPA RMK + HTVPL+D L +L +K ++ Sbjct: 261 VFVRNTELRGGRWDEIDFDARLWVIPAERMKHEKTAPKPPHTVPLADWTLELLAELKAIT 320 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 G ++FPSR K + ++ T+ + G G+ HG R++AS+ LNE+GF PD IE Sbjct: 321 GDTPYLFPSRTKKDGFISENTLGKIMNNMGYKGIATPHGFRALASSVLNEQGFNPDAIER 380 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 LAHV++N +R AYNR+DY+ +RR MM+W++ ++ Sbjct: 381 QLAHVEENRIRAAYNRADYMTERREMMEWYSGYLRE 416 >UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteriaceae RepID=B7N6K6_ECOLU Length = 415 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 194/400 (48%), Positives = 269/400 (67%), Gaps = 3/400 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M ++ KPLT+ EI AKP+ DY+L DG+GL LL+K+SG K W F YY P+TK+RTK S Sbjct: 1 MPKQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+L+ AR+ R + + LL + IDP++H + T VAE+W KK Sbjct: 61 GPYPVVTLAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRLQNECTLEKVAEQWLKEKKR 120 Query: 121 --SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 ++ED+A D+WRSLE +FP++G +TEI+ L + + P++ +G LET+RR+ R+ Sbjct: 121 TSDLSEDHAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL 180 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 NE+ +A + LI+ P+ N+ F+KP+K+NMP++ P +L +LM ++ ASI TRCL Sbjct: 181 NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 W+LLT RP EA ARW +ID +EW+IP MKMNR HTVPLS AL +L++M+P+ Sbjct: 241 IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV 300 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 S R ++FPS KP + M+ QT NAAL R G GG LV+HG+RSIA TA FP +V+E Sbjct: 301 SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLE 359 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +ALAH ++E+ AYNRSDYLEQRRP+MQWW + V AA Sbjct: 360 SALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARR 399 >UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4F8_HAES1 Length = 413 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 175/396 (44%), Positives = 251/396 (63%), Gaps = 2/396 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR+ LT+T+I AKPKD DY L DG GL LL+KS+GSKLW+F YY L K+R S Sbjct: 1 MARQIIQLTNTKILNAKPKDKDYTLSDGQGLYLLVKSNGSKLWRFNYYDLL-KKRKLISL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YP SL DAR R E + LLAKDI+PQ++ +Q + + NT + VA+ W +K + Sbjct: 60 GSYPETSLLDARTKRDEYRALLAKDIEPQDYIFKQKEQAIFNQCNTLIGVAKDWREMKSS 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V D D WR LE +FP +G++ I++I A +Q + E ++++ + +NE Sbjct: 120 KVEADTMKDQWRLLELHLFPHLGNMPISDITAPFTRMKLQKLADDKKFEMLKKVIRGLNE 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 +M +A N GLI P+ N+ + F + ++ PSI PD+LP+ + ++ A+I + TRCL Sbjct: 180 IMRFAVNAGLIQFNPTANLQELFPSGEVQHRPSIHPDKLPKFLESVNKANIQLQTRCLLE 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM-NRDHTVPLSDGALAILEMMKPLS 299 WQLLT+ RP+EAA W EIDF W IP RMK R H VPLS A+ IL +M+P++ Sbjct: 240 WQLLTMVRPSEAAGTMWREIDFENKTWLIPKDRMKGKKRSHLVPLSQQAINILNIMRPIT 299 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 G +F+FP M+S+T+N AL++ G G+L +HG RSIASTALNE F ++IEA Sbjct: 300 GNCDFVFPKNGDLTTNMSSETINKALRKMGYQGILCAHGFRSIASTALNENEFNVEIIEA 359 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 L+HV ++VR AY+RS Y +Q+R ++WW + V+ Sbjct: 360 LLSHVKGDKVRTAYDRSTYEKQKRQYIEWWGNFVEK 395 >UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepID=Q5E028_VIBF1 Length = 399 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 165/399 (41%), Positives = 255/399 (63%), Gaps = 2/399 (0%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR+ LTD +IK+A P ++ L DG+GL L ++ +G+K WQF++ P+T++ K + Sbjct: 1 MARQVIRLTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDPVTRKIQKIAL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL++AR E + LLA+ I+P+ ++ + ++ +T+TF++VAE+W+ KK Sbjct: 61 GPYPELSLANARSKTTEYRTLLAQKINPKSFEQSKELEAKRVQTSTFIVVAEQWFERKKE 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +V+ ++ WR+LE+ IFP + I + I A + ++P++ G TV+R+CQ +N+ Sbjct: 121 TVSPAHSYREWRTLEKYIFPHMSKIPVATITAVETIDVLRPLEKEGKYSTVKRICQSLNQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRT-ASISMSTRCLF 239 +M Y+ N GLI A P I K F K +MP+IRP+QLP + + + ++I T+ L Sbjct: 181 IMDYSVNHGLIHANPLAKIIKVFRKNTVLHMPTIRPEQLPDFLKRLHSCSTIQTKTKLLI 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +WQL T+TRP EAA RW +ID W IPA MK ++H +PL+ A+ IL ++ S Sbjct: 241 LWQLHTMTRPKEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIRLQS 300 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKR-AGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 +++FP N ++ T NAA+KR GL LV+HGLR+IASTAL+E GF +IE Sbjct: 301 KRCDYVFPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALHEYGFDSLLIE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 A L+H D+NEVR +YNRSDYLEQR+ +M WW++ + A Sbjct: 361 ACLSHADQNEVRASYNRSDYLEQRKEIMCWWSNYIDEAA 399 >UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV41_9DELT Length = 401 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 142/402 (35%), Positives = 212/402 (52%), Gaps = 8/402 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + LTDT I+ AKPK+ Y++ D GL +L+ G KLW+ +Y + + Sbjct: 1 MPK---KLTDTAIRTAKPKEKPYKMADSGGLYVLVNPGGGKLWRLKYR--FEGKERLFAI 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAVSL +AR +K ++A+ +DP ++ + A++ TF +VA W K Sbjct: 56 GTYPAVSLKEARARAVTAKEMIARGVDPCAA-RKAAKAEAIARSRTFEVVAREWHKKKLA 114 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 T ++A I R LE FP +G I E+ A + + V+ +G LET RRL Q + Sbjct: 115 GWTPNHARQIIRRLETLAFPDLGSRPIAELGAPDFLAVLGKVERQGHLETARRLAQICGQ 174 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLF 239 V YA+ G+I A P+ ++ +A + +I P ++ L+ + +S Sbjct: 175 VTRYARLAGMIVADPASHLTEALTTKPVRLHAAITEPREIGALLRAIDDYPGDVSVSFAL 234 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 R +E A W EID + +EW IPA RMKM R H VPL+ + + + ++ Sbjct: 235 KIMPYVFVRSSELRRATWAEIDLDRAEWLIPAERMKMRRPHLVPLARQVVGMFRALHAIT 294 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIE 358 G RE +FP + ++ + AL+R G G + HG RS+AST LNE G+ PDVIE Sbjct: 295 GNRELVFPGTASVTRCISDVGLLNALRRLGYGRDEMTVHGFRSMASTRLNEMGYRPDVIE 354 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 A LAH ++N VR AYNR+ Y+E+RR MMQ WAD + + G Sbjct: 355 AQLAHAERNSVRDAYNRAQYVEERRRMMQEWADYLDSLRDGE 396 >UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammaproteobacteria RepID=A7ZQ61_ECO24 Length = 436 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 192/403 (47%), Positives = 261/403 (64%), Gaps = 6/403 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKS---SGSKLWQFRYYRPLTKQRTK 57 MA+ K LTDTEIK+ KP + + L+DGDGL L I G K W FRY P+TK+RTK Sbjct: 28 MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK 87 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 S G YP ++L+ AR LR E LL IDPQ H ++ ++A +TF VA++W + Sbjct: 88 VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE 147 Query: 118 KKT--SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 K +++D+A+DIWRSLER+IF +GD I EI+ L + ++P++ RG LET+RR+ Sbjct: 148 KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII 207 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 R+NE+ YA LI+ P+ N+G+ F KP+K+NMP++ P +LP+ + + ASI + T Sbjct: 208 SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET 267 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 R L WQLLT RP EA RW +ID W IPA MKM + H VPLS AL +L++M Sbjct: 268 RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM 327 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPP 354 K +SG RE++FPS P M+ QT NAA+ R G GG LV+HG+RSIA TA E G F Sbjct: 328 KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT 387 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 DV+EAALAH K+E+ AYNR++YL +R +MQWW+D V + Sbjct: 388 DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQK 430 >UniRef50_B4X5T7 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5T7_9GAMM Length = 398 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 133/398 (33%), Positives = 203/398 (51%), Gaps = 8/398 (2%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T L+D +I+AAKP+D Y + DG+G+ L I G K W+F+Y ++ + S G YP Sbjct: 3 TNKLSDVKIRAAKPQDKLYSISDGEGMFLEISPKGGKWWRFKYR--FNGKQKRLSLGTYP 60 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT--SV 122 + SL AR R +++ LLA +DP + +K + ++ A NTF VAE W K Sbjct: 61 STSLKAARDKRQQARELLASGVDPAQQRKTEKLATETALRNTFAGVAEEWAQNKVRSEKW 120 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 T L+ + P +G I+EI L +Q Q T RL +E+ Sbjct: 121 TPTTEKKRRIWLDNGLMPYLGSRPISEITTAELWGVLQHTQKTSGY-TANRLRGMASEIF 179 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLFMW 241 +A TG D P++ + ++K+ + + PD++ +++ + +++T+ Sbjct: 180 NFAMATGRADNNPALPLQGQIAVKKEKHRLAILEPDEVGKMLRAIDGCQAAVTTKAAARL 239 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP E A W EID + W IPA +MKM H VPLS A+AIL+ ++PL+G Sbjct: 240 APLVFVRPGELRHAEWSEIDLKKALWSIPAEKMKMRESHVVPLSRQAVAILKEIQPLTGS 299 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAA 360 ++F KP +P++ T+N LK G G + HG R+IA T L+E D IE Sbjct: 300 SGYVFEG-TKPGEPISDNTLNKLLKALGYKGKMTQHGWRAIARTLLDEVLDVRVDWIEHQ 358 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 LAH ++ RAYNR+ +LE R MMQ WAD + + Sbjct: 359 LAHSVRDANGRAYNRTSHLEGRIGMMQLWADYLDKLKA 396 >UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae RepID=B9Z434_9NEIS Length = 395 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 130/395 (32%), Positives = 210/395 (53%), Gaps = 1/395 (0%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PL+D +I+ +KP D Y+L DG GL L I+ +G+K W++RY+ T + + G YP Sbjct: 1 MPLSDVKIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPT-KDGIYTIGEYPD 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL++AR R + L+ + +P +K SQ+ T +VAE W V +E Sbjct: 60 VSLAEARAERERVRALVKEGKNPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSET 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 Y + + L+RD+ G++ I E+ + L+ A+ + RGA R + Q + +A Sbjct: 120 YRKQVEKHLQRDLLDEYGELPIREVTSAQLLAAISKIDERGAPSIARLVRQWAGSIFRHA 179 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 T D+ P+ + A P ++ + D+LP + + TR Q+LT Sbjct: 180 IATLRADSDPTYPLRGALRMPPTRHNAHLSADELPGFLKALDAYKGFGLTRLAVNLQMLT 239 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 + R E A W E D +A+EW+IP +MKM H VPL A+AI+ ++PL+G R ++ Sbjct: 240 LVRTQELRLAEWAEFDLDAAEWRIPPEKMKMRDPHIVPLPKQAVAIMRELEPLTGRRRWV 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FP+ + M + T+ ++ G G HG R+ AST L+E+G+ D+IE LAH++ Sbjct: 300 FPNVRNHDTGMTNTTILRVIEILGYKGRATGHGFRATASTILHEQGWNTDIIERQLAHLE 359 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 +N+V+ AYN + YL++RR M+Q WAD + Sbjct: 360 RNKVKAAYNHAGYLKERREMLQAWADYLDLQRDKK 394 >UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K287_PSEFS Length = 401 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 214/403 (53%), Gaps = 12/403 (2%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PL DT + AKP+D Y+LYD GL L ++ +G + W+ +Y + + + G YP Sbjct: 1 MPLKDTNCRNAKPQDKPYRLYDEQGLYLEVQPNGGRYWRLKYR--FLGKEKRLALGVYPE 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L +AR+ R +++V LA DP ++ SQ +TF VA +W N++++S + Sbjct: 59 VGLQEARRKRDDARVQLASGQDPSLQRRMAKVVSQLDHQHTFESVATQWLNIRESSWDPE 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 Y + + LE + FP +G + I+ I LV+ +Q + RGA ET RR+ Q ++ +A Sbjct: 119 YTRTVRQRLELNAFPWLGKLPISSISTPMLVENLQRIIKRGARETARRVAQIYKQIFEFA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLL 244 + G+ N+ + + K+ ++ P++L L+ + + + +M C L Sbjct: 179 EAAGITPPNQIGNLSRTLPAKRVKHFAAVTDPEKLGALLKALDSYAGTMPVCCALKLAPL 238 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKM-------NRDHTVPLSDGALAILEMMKP 297 RP + W E++ +A EW IP +MK DH VPLS A+A+L +KP Sbjct: 239 LFCRPGDLRHMEWSEVNLDAGEWLIPGHKMKGLTATKQDRPDHLVPLSQQAIAVLHELKP 298 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE-EGFPPD 355 L+G + FPS ++PM++ V +AL+R + G + HG R+ A T E GF PD Sbjct: 299 LTGRHRYAFPSARGGDRPMSNNAVLSALRRMDISGDEMTGHGFRATARTIGAEVLGFRPD 358 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 ++E LAH KN + RAY+R+ +L +RR MMQ WAD + + Sbjct: 359 LLEHQLAHTVKNPLGRAYDRTSFLPERREMMQIWADFLDSIKR 401 >UniRef50_C0N6F7 Site-specific recombinase, phage integrase family protein n=2 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F7_9GAMM Length = 401 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 135/402 (33%), Positives = 211/402 (52%), Gaps = 14/402 (3%) Query: 6 KPLTDTEIKAAKP--------KDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTK 57 PLTD +IK KP + Y++ D GL + + GSK W++++Y K Sbjct: 1 MPLTDKQIKNLKPGIRPDKSETNKPYKVSDSHGLYIEVPLKGSKRWRYKFY--FEGTERK 58 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 S G YP +SL +AR+ R + + + IDP +++ R + NT+ VA W Sbjct: 59 LSLGTYPKISLKEARQKRDDIRKKIDAGIDPSYERRK-KRLNASVSGNTYEEVAREWHAR 117 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K + T+ YAD LE++ FP IGD I +I A L+ ++ V RGA+ET R+ + Sbjct: 118 NKANWTKKYADLTLSRLEQNAFPWIGDRQIDKITAPELLTVIKRVFDRGAIETAHRIRRL 177 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTR 236 N + +A G+ + P+ + AF + K+ ++ P ++ +L+ + S +TR Sbjct: 178 SNTIFKFAIANGMTETNPAAALEGAFPTQKVKHHSAVTEPKKVAELLRAIDGYSGHFATR 237 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 C L + RP A W +ID S W+I RMK R H +PLS AL ILE ++ Sbjct: 238 CALKLSALVMNRPINIRAAEWGDIDLENSVWRIHMGRMKSRRTHIIPLSRQALEILEEIR 297 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGFPPD 355 PL+G +++FP +PM+ T+ AAL+R G G + +HG R +AST L+E+G+ D Sbjct: 298 PLTGEGKYVFPCMRSKARPMSENTICAALRRMGFSGEEMSAHGFRGMASTLLHEKGYNSD 357 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 +E LAH+D + R AYN + +L+ R M+Q WAD + Sbjct: 358 WVERQLAHID-SSTRSAYNHAQHLDDRAKMLQEWADYLDELR 398 >UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellaceae RepID=B3GXJ8_ACTP7 Length = 406 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 159/400 (39%), Positives = 239/400 (59%), Gaps = 4/400 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + KPL +TE++ AK K A+Y L DG GL L +K S K W F Y P+TK+RT + Sbjct: 1 MPKIVKPLNNTEVEKAKIKPAEYSLSDGYGLYLRVKPSKVKTWIFNYQEPITKRRTNLTI 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA+S+++AR +R E + LLAK IDP+ +++EQ R E NTFL +A+ W + Sbjct: 61 GDYPAISIAEARTIREEYRALLAKGIDPKTNKEEQERQQAEQNDNTFLKLAQLWKEKRSK 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V W LE +FP +G +I +I L+KAV+P+ +G +T+ R+ N+ Sbjct: 121 EVEPLTMAKNWARLENHLFPVLGHYAIDKITPPILIKAVKPLNDKGINDTLHRILNLANQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 ++ Y G++ N+ A+ K + + P+I+P +LP+L+ + ++ T+ LF Sbjct: 181 ILNYGVTVGVLPFNACQNVSDAYHKETQTHHPAIKPSELPKLIADFQNSNRDFLTKVLFK 240 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----DHTVPLSDGALAILEMMK 296 WQLL++ RPAEA W EIDF+ + W IPA +MK R HTVPLS L ILE ++ Sbjct: 241 WQLLSMVRPAEAVSIEWAEIDFDKNLWFIPAEKMKKTRKGQFPHTVPLSSQMLKILESLR 300 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 P++G +F+FP +PN+ M+ +T+ AL++ G G+ SHGLRSIA T L ++ Sbjct: 301 PITGVNKFVFPHYSQPNKSMSKETITNALRKIGYRGIQDSHGLRSIARTYLEDQAVDFRA 360 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 E+ LAH NE +AYNR++Y+E RRP+MQ W D ++ Sbjct: 361 AESCLAHRIGNETSQAYNRAEYIELRRPLMQLWGDYCESC 400 >UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B120_SULD5 Length = 419 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 134/420 (31%), Positives = 215/420 (51%), Gaps = 20/420 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +K PLTDTE+K +K ++ Y+L DG GL LL++ +GSK W+ Y RP R S Sbjct: 1 MPKKVLPLTDTELKKSKIQEKTYRLTDGAGLYLLVEPNGSKGWRLDYTRPNGG-RNTISL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK----------EQVRNSQEAKTNTFLLV 110 G YP ++L +AR+ R E K + K +DP +K E +E K NTF V Sbjct: 60 GTYPTITLCEAREKRDELKKQIKKGVDPSLERKGVKELQREEKEADHAEEERKQNTFEKV 119 Query: 111 AERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET 170 A ++ + Y LE IFP +G+I I ++ +++ ++ ++A +ET Sbjct: 120 ARDFFESITIELVPKYHSSKLARLENHIFPYMGNIPIDQVSRLMIIEHLERLKAANKIET 179 Query: 171 VRRLCQRINEVMIYAQNTGLIDAVPSVNIGK--AFEKPQKKNMPSIR-PDQLPQLMHTMR 227 RR+ I +V YA L +I K K + ++ P+I P ++ +L+ + Sbjct: 180 ARRILNIIEQVYRYAVTHELAPHNIIADIDKRYVIGKKEVRHFPTITDPVEIGKLVRMID 239 Query: 228 TASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDG 287 +ST+ +LT RP A W+E D W+I A +MKM R H +P+ Sbjct: 240 EYPGDISTKYALKLAILTAQRPYNIRFAEWNEFDLERDVWQISAEKMKMKRPHIIPIILQ 299 Query: 288 ALAILEMMKPLSGG-REFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIAST 345 IL ++P + +++FP+ +P++ T+N AL+R G +VSHG R++ ST Sbjct: 300 IKTILRELEPFTKNRSQYLFPALTSNVRPISENTMNQALRRLGYTKEEIVSHGFRAMFST 359 Query: 346 ALN----EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 N E GF D+IE LAH ++N+ + AYNR++YL +RR +++WWA+ + Sbjct: 360 IANEHIPEHGFHSDIIERHLAHSEQNKTKGAYNRAEYLNERRGLIEWWANFLDKVRMNKP 419 >UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 Length = 439 Score = 417 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 146/421 (34%), Positives = 221/421 (52%), Gaps = 19/421 (4%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 L +++ AKPKD Y++ DG GL L + + GSK W+ +Y RP K+ + +FG +P Sbjct: 5 MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 64 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V+L+ AR R E+K LL + IDP+ QKE + TF +A W K +ED Sbjct: 65 VTLAQARAKRDEAKKLLVQGIDPKVVQKEARAENS--GAYTFEAIAREWHASNK-RWSED 121 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + + R LE IFP IG I ++K L+ ++ V A G + +RL QR+ +M YA Sbjct: 122 HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA 181 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 ID+ P+ ++ A + ++ P++ + P+ + + + TR LLT Sbjct: 182 VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVKLSLLT 241 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILE 293 R +E ARWDE DF+ S W+IPA R MKM +H VPLS A+ +L Sbjct: 242 FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLN 301 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEG 351 +K +SG +E +FP + M+ TVN+AL+ G + HG R++A AL E G Sbjct: 302 QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG 361 Query: 352 -FPPDVIEAALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 + D IE L+H ++N VR AY S++L++RR MMQWWAD + + I L + Sbjct: 362 LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLDMNRNKYISLMIIQNT 421 Query: 410 R 410 + Sbjct: 422 K 422 >UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4I9_9PROT Length = 410 Score = 417 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 141/407 (34%), Positives = 214/407 (52%), Gaps = 12/407 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ +K AKPKD Y+L DG GL LL++ +G K W+ Y ++ + G YP +S Sbjct: 3 LTELAVKNAKPKDKPYKLSDGGGLFLLVQINGGKYWRLAYR--FADKQKTLALGIYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR+ R +++ LLA D DP +KE R Q A N+F +A+ VK TE +A Sbjct: 61 LADARERREQARKLLANDTDPSAIKKETKRILQTATVNSFSALAKELHKVKAPMWTEGHA 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++E+ FP IGD + EI+ LV ++ V+A+G ET RL Q I+ YA Sbjct: 121 KQWMLNMEKYAFPVIGDRPVAEIEPLELVGIMRNVEAQGTFETRDRLLQTISSTFKYAIA 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA----SISMSTRCLFMWQL 243 G P+ ++P+ +N + D++P + +S+ F L Sbjct: 181 IGKAKYNPAEIRLALADRPKVENFACLSTDEIPAFLRAFDDYQERGKVSLIAVAAFRLLL 240 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARM------KMNRDHTVPLSDGALAILEMMKP 297 LT TR +E ++W + D +A W IPA + + H VPLSD A+A+L + P Sbjct: 241 LTATRSSEVRFSKWADFDLDAGCWIIPAEQTGRKGKHGKRKPHAVPLSDQAIAVLRDLYP 300 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 ++G E +FPSR + ++ TVN ++ G G HG RS+A T L + G +V+ Sbjct: 301 VTGHGEHVFPSRNGMGRVISENTVNKIIETMGYKGRQTGHGFRSLARTTLGDMGHRWEVL 360 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 EA L+H +N+ AY R+ Y E+RR +MQ WAD + A SG+ V+ Sbjct: 361 EAMLSHALENQTAAAYVRTTYFEERRGIMQKWADYLDAVKSGAQVIP 407 >UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli RepID=Q93UI5_ECOLX Length = 401 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 128/402 (31%), Positives = 205/402 (50%), Gaps = 7/402 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTD ++++ + DG G+ L I +SG + W+ +Y + +FG YP Sbjct: 1 MPLTDLKVRSLT---TPGRYADGGGMYLQITASGGRYWRMKYRH--GGKEKLLAFGVYPL 55 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V + +AR +K L++ DP +K +++ NTF VAE W + + Sbjct: 56 VGIKEARDKLFYAKQALSRGEDPGATKKLAKFQAEQDAANTFKAVAEDWLDHQAGRWEAI 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 SLE D++P +G + I+ I ++ V+ ++ RGA E R+ QRI + Y Sbjct: 116 TLSRTRASLEADVYPTLGSLPISSITPRQVMDVVKKIEKRGASEIATRVLQRIKSIFRYG 175 Query: 186 QNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 I+ ++ + + + ++ ++ P QLP+ + + + T + Sbjct: 176 TTHQRIERNTMADLVPSEILKPRRVQHRAALAPAQLPEFLKKLASYEGEPHTVNALHLLM 235 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT RP E ARWDEID A W+IP RMKM +H VPLS A+A +E M+PLSG R+ Sbjct: 236 LTAARPGEVRGARWDEIDLKAKLWRIPPERMKMRSEHVVPLSSEAVAAIEAMRPLSGNRD 295 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 +FPS P++P++ T N+A+ R G + +HG R++ ST NE G+ D IE LAH Sbjct: 296 LVFPSPFYPSKPLSENTFNSAMARMGYKYLATAHGFRALFSTVANESGWSADAIERQLAH 355 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 ++N+VR AY+R L +R MM WWA + +G + + Sbjct: 356 AERNQVRAAYDRGVRLPERVKMMNWWAQYLAERKAGKAISSP 397 >UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_HAES1 Length = 418 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 179/417 (42%), Positives = 270/417 (64%), Gaps = 8/417 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADY------QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ 54 M R T L + +I AAKPK + +L DG+GL LL+K++GSKLW+F YY+PLTK+ Sbjct: 1 MTRPTNLLNNRKIDAAKPKADEQGNLTDNKLQDGNGLYLLVKATGSKLWRFNYYKPLTKK 60 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 RT+ S GAYP VSL+ AR+LR + + LLA+DIDP EH++ + + NT+ VA W Sbjct: 61 RTEMSLGAYPDVSLAQARELRNQYRSLLAQDIDPNEHRQNVKQAKLDEINNTYEAVAWAW 120 Query: 115 WNVK--KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 + + K + +E Y D+ ++R + P G + I++I A +KA + Q G LE ++ Sbjct: 121 FEYRQTKKNFSEGYKKDVASLIKRCLLPHFGSLPISQITAPMALKAFKQYQDEGTLEKLK 180 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASIS 232 R Q+ NE+M +A + LI P+ NI K F+ P ++ +I+P+ LP+ M+T+ A I+ Sbjct: 181 RTIQKHNEIMNFALHRDLISFNPTANISKEFDSPTVEHFKTIQPEDLPEFMYTLNNAQIN 240 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 + TR L +WQLLT+TRP EAA+AR+++ID + W IPA MK H + LS A+A+L Sbjct: 241 LRTRYLILWQLLTMTRPNEAAKARYEDIDEKSRLWTIPAENMKRGIAHKITLSRQAMALL 300 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 +K LSGG+ ++FP+ P +N+QT NAA+KR G G LV+HGLRSIAST LNE+G+ Sbjct: 301 REIKKLSGGKTYLFPNVKYPQTHVNTQTANAAIKRMGYQGKLVAHGLRSIASTYLNEKGY 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 ++IE AL+H++ + ++ AY+R + LEQR ++Q WAD V+ G++ HL ++ Sbjct: 361 NSELIEVALSHINSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGALPQYHLKRV 417 >UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria RepID=C1D8D2_LARHH Length = 452 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 139/430 (32%), Positives = 216/430 (50%), Gaps = 34/430 (7%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA- 65 PLT IK KP+D Y+ DG GL LLI +GSK W+ Y + ++ + G Y Sbjct: 6 PLTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYR--INGKQKTLAIGVYCQF 63 Query: 66 ---------------VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLV 110 +SL+DAR ++ +LAK IDP E ++E + + +F V Sbjct: 64 ALVDDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYV 123 Query: 111 AERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALET 170 A W +A ++ LER IFP IG + EI+ ++ A++ V+A+ L+ Sbjct: 124 AREWHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDV 183 Query: 171 VRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS 230 RL Q + ++ YA TG ID P ++ A + + + P++ ++LP+L+ + A Sbjct: 184 TSRLRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAK 243 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNR 278 + TR LLT R +E ARW+EIDF+ + W IP R KM Sbjct: 244 LRPLTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRT 303 Query: 279 DHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVS 336 H VPL ALA+ + ++G E +F P +PM+ TVN ALKR G + Sbjct: 304 PHLVPLCQQALALFREVHAITGRFELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCG 363 Query: 337 HGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVK 394 HG R++A +AL+E G F + IE ++H +++ VR AY +++++L +RR MM WWAD + Sbjct: 364 HGFRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLD 423 Query: 395 AADSGSIVLT 404 A G+ + Sbjct: 424 AQREGTYIEP 433 >UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomonas RepID=A5W5R9_PSEP1 Length = 393 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 141/387 (36%), Positives = 209/387 (54%), Gaps = 3/387 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT + AKP++ Y L D GLTL + +G K W FR+ ++ + S G YP + Sbjct: 3 LTDTAARQAKPREKGYTLADSLGLTLYVAETGVKSWHFRFTWL--GKQARISLGTYPEIG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR R E++ +A+ DP+E ++E+ AK TF V E W +K +TE Sbjct: 61 LKEARARRDEAREDVAQGKDPRESRREKKVERLGAKERTFRRVYEEWLEFRKGGLTESTV 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I ++E D+ PA G I IK ++ ++ ++ RG++ T + Q I +V YA Sbjct: 121 KVISNAMELDVLPAFGLRQIDSIKRADVITLIRRIERRGSITTAVKTRQWIGQVFRYAVA 180 Query: 188 TGLIDAVPSVNIGKAFEK-PQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G+I+ P+ + EK KN P + ++P ++ + + + +C +LT Sbjct: 181 IGMIEINPTAEMHAVTEKMAPHKNRPFLAFTEMPAIIKAIEESQSGLQLQCATKLLILTA 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RPAE +A W EID + + W IPA++MKM RDH VPLS A+ +L M P+SGG +++F Sbjct: 241 CRPAEVRKAEWSEIDLDTATWSIPASKMKMRRDHVVPLSRQAVELLRSMLPISGGLKYVF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P+R +P+ L R G G HG R + ST +N G+ D IE LAH D Sbjct: 301 PNRTDAVRPIGINYAVNLLDRCGYTGRQSPHGFRHLFSTEMNSRGYNKDWIERQLAHADS 360 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 + +R YN + YLEQRR MMQ WADLV Sbjct: 361 SAIRDVYNHATYLEQRRDMMQAWADLV 387 >UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophilus RepID=Q4QL03_HAEI8 Length = 419 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 161/414 (38%), Positives = 254/414 (61%), Gaps = 10/414 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA KPL+ TEI AKPK+ DY L DG GL LL+K +GSK+W+F+YY+P++K+RT S Sbjct: 5 MAVLVKPLSITEINNAKPKEKDYSLSDGQGLFLLVKMNGSKIWRFQYYKPISKKRTLISL 64 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL DAR++R + LLAK+IDPQ+++ +Q + + + + T + + W +KK Sbjct: 65 GVYPEISLKDAREIRDLYRSLLAKNIDPQDYRLQQEQKAIQERQFTLSEMGKEWLYLKKN 124 Query: 121 -----SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 + E DI + LER +F +G SI+EI A ++ ++P++ G L+T+ R+ Sbjct: 125 EVDTGRLKEVTFIDIGKRLERHLFKVLGHYSISEISAPLAIEKLKPLERAGKLDTLHRII 184 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 +N++MIY+ N G+I+ + +IG+ F +P +N P+IRP+QLP+L ++ +++ + T Sbjct: 185 GYLNQIMIYSVNRGVINYNATADIGRVFIRPIAENNPTIRPEQLPKLFEDLQNSTLEIET 244 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN----RDHTVPLSDGALAI 291 RC LLT R + W+ +DF S IP +MK +D +PLS A+ I Sbjct: 245 RCALELLLLTAGRAGAITQLEWENVDFENSLLNIPKEKMKGRQGKVQDFILPLSKQAVTI 304 Query: 292 LEMMKPLSG-GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 L +++ L+ +F+FPS+ P QP++ +T N AL R G +L +HGLRS+ STA+NE Sbjct: 305 LRLLQKLNRCNSKFVFPSKKNPRQPISKETPNKALGRIGYRNILTAHGLRSVFSTAMNEA 364 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 F ++IE LAH + + VR YN++ Y+ QR MQWW + V+ A G ++ Sbjct: 365 EFNSEIIEVCLAHFEYSSVRGTYNKAKYMPQRIEYMQWWGNFVEEASDGKALMG 418 >UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C8U1_ACAM1 Length = 399 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 212/403 (52%), Gaps = 11/403 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA T LTD +++ AKPK Y+L DG GL L I +G K W++RY + + + S Sbjct: 1 MA--TNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYR--IQGKESTFSI 56 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YP + L +AR E++ L+A+ ++P K + Q A+ NTF VA+ W++ K Sbjct: 57 GSYPELGLGEARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNA 116 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +E Y + L RD+ P++G +TEI A ++ ++ V+ARGA + + Sbjct: 117 GWSESYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRM 176 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLF 239 V+ YA TG D ++G A K+ +I P ++ +LM + SM R Sbjct: 177 VLGYAVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAM 236 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 LT RP E +W +I++N EW+ + K DH VPL+ A+ IL+ ++ ++ Sbjct: 237 RMGALTFVRPGELRTMQWSQINWNTKEWRFQVS--KTETDHIVPLATQAIEILQTLQLIT 294 Query: 300 GG--REFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIAST-ALNEEGFPPD 355 G ++FPS + M++ V AAL+ G+ + HG R++A T E + P+ Sbjct: 295 GNGTSRYVFPSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPE 354 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +IE LAH + + RAYNR+++LE+RR MMQ WAD + + Sbjct: 355 LIEHQLAHAVRGPLGRAYNRTEFLEERREMMQAWADYLDELER 397 >UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGW9_DIAST Length = 428 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 142/425 (33%), Positives = 216/425 (50%), Gaps = 27/425 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKL-WQFRYYRPLTKQRTKQS 59 MA T L+DT I++ KP D QL DG+GL LL+ +G K W+F Y + +R S Sbjct: 1 MA--TMALSDTTIRSVKPGDPRRQLTDGNGLYLLLYVNGGKHGWRFDYK--VQGKRKTIS 56 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN------------TF 107 G YPA SLS AR ++ L+A IDP +K + ++ + TF Sbjct: 57 LGTYPATSLSLARAKANAARELVAAGIDPSADRKSKKAAEKKVHEDAKLVAAGKPLNGTF 116 Query: 108 LLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 VA W+ V+ YA+ + R LE D+FP IG + ++ A L+ ++ ++ RG Sbjct: 117 EAVAREWFEVRSPEWAAKYAEKVLRRLEADVFPHIGIRPVGDVTAPELLAVLRRIEDRGV 176 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTM 226 +ET R + +++ +A GL + ++ KP+ ++ P+I P +L +L+ Sbjct: 177 IETAHRAHESCSQIFRFAVGAGLAKGDVARDLKGLLRKPRTRHFPAILCPKRLGELLRAC 236 Query: 227 RTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRD 279 + R + + RP E ARWDEI+ N + W IP RMK Sbjct: 237 DGYVGTHVVRAALSLAPMLLLRPGELRHARWDEINLNTATWTIPGERMKREREGKLNGMP 296 Query: 280 HTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHG 338 H VPL A+ +L + P++G E +F ++PM+ TVNAAL+ G G + HG Sbjct: 297 HIVPLPRQAVQVLRELHPITGRGELVFRGERHHHRPMSENTVNAALRAMGFGADEVTGHG 356 Query: 339 LRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 R+ A T L+E G ++IEA LAH K+ + RAYNR++YL QRR MMQ WA+ ++A Sbjct: 357 FRATARTLLDERLGIASEIIEAQLAHSVKDSLGRAYNRTEYLVQRRKMMQQWANYLEALR 416 Query: 398 SGSIV 402 G+ Sbjct: 417 RGNAT 421 >UniRef50_A6QCY9 Site-specific recombinase, phage integrase family n=2 Tax=Proteobacteria RepID=A6QCY9_SULNB Length = 409 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 138/404 (34%), Positives = 214/404 (52%), Gaps = 9/404 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR T PLTD EIKAAKPK+ +Y+L+DG GL L I G K W+ +Y + + S Sbjct: 1 MARITNPLTDKEIKAAKPKEKEYKLFDGGGLYLSITPKGQKWWRLKYR--FDGKEKRISL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA---KTNTFLLVAERWWNV 117 G YP SL DAR+ R + K +AK IDP +KE+ + NTF + W + Sbjct: 59 GVYPNTSLQDARQQREDFKTQIAKGIDPSRERKEKKEAVKAEVFKSRNTFKSICLEWIEL 118 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 ++ + E R+LE+D + +GD S+ +I H L+ Q +Q RGA+ET R Sbjct: 119 QRPQMAEATLSKYERTLEKDFYAPLGDKSMNDITRHDLITIAQVIQDRGAVETAHRSLGL 178 Query: 178 INEVMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMS 234 N + YA + +I + K+ +I + ++ +LM+ + + + Sbjct: 179 CNRIWRYALQFDKVGHNIVSDISKKDVLRSYKNKSFKTITDEVRIGELMNAIDNYTGEFT 238 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 T+ LT RP A W E D W IPA +MKM ++H +PL+ A+ IL+ Sbjct: 239 TKSALRLLPLTFVRPHNIRYAEWSEFDLENGIWTIPAEKMKMKKEHKLPLAPQAVKILKE 298 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FP 353 + P + +++F S I + ++ T+N ALKR GG +VSHG R++ ST E G F Sbjct: 299 IYPYTNDAKYVFHSPISRLKAISENTLNMALKRLDFGGEIVSHGFRAMFSTLAYESGKFR 358 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 +VIE LAH + N+V++AYNR+ Y ++R +++W+AD ++ Sbjct: 359 SEVIEDLLAHQEANQVKKAYNRAAYDAEKREIVEWYADYLENVK 402 >UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacteria RepID=Q3JN19_BURP1 Length = 462 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 126/401 (31%), Positives = 207/401 (51%), Gaps = 8/401 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++ AKP+D Y+L DGDG+ LL++ +G K W+ Y ++ + G YP VS Sbjct: 60 LSDLAVRNAKPQDKPYKLTDGDGMFLLVQPNGGKYWRLAYRYL--GKQKTLALGVYPEVS 117 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ RAE++ LAK DP E +K R ++ A N+F +VA W ++ V Sbjct: 118 LALARQRRAEAREQLAKGADPGETKKADRRAARLAADNSFEVVALAWLEERRPYVEPRQH 177 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + L+ D+FP +G I +I A ++ ++ + +RGA T R+ I V +Y Sbjct: 178 ERTLVRLKNDVFPWLGKRPIADIDAPEILAVLKRIDSRGARFTAHRIRSEIGRVFVYGIK 237 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G A P+ ++ KA Q + SI P Q+ +++ S + C + Sbjct: 238 EGHCKANPAASLVKAIPPAQTTHFASITEPAQVGEMLRAFDGFSGTFPVLCALKLAPMLF 297 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E +A W D +EW+ + K +H VPL+ A+ IL+ + ++G +++F Sbjct: 298 VRPGELRKAEWSHFDLEKAEWRYLVTKTKT--EHLVPLATQAVKILKELHAVTGSGQYVF 355 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALN-EEGFPPDVIEAALAH 363 P +PM+ +NAAL+R G + HG R++A T L+ E P+VIE LAH Sbjct: 356 PGARSKQRPMSDAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAH 415 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 + + RAYNR+ ++++R MMQ WAD + G+ ++ Sbjct: 416 TVPDTLGRAYNRTKFIKERCAMMQKWADFLDQLKLGAKIIP 456 >UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea psychrophila RepID=Q6AR70_DESPS Length = 399 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 130/407 (31%), Positives = 210/407 (51%), Gaps = 18/407 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M L +++ AK +L DG GL+ + SG K W +RY L ++ Sbjct: 1 MPT----LKALQVRNAK---DPCRLSDGLGLSFEVTKSGVKRWLYRYR--LDDKQQMCVL 51 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT-------NTFLLVAER 113 G YP +SL ARK+ E++ L+ + +P ++ + + + +F +A Sbjct: 52 GRYPELSLEQARKIHREARALVREGCNPARERRRKKQEVISKEKAERDDRSKSFEYIALE 111 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 W K S + + + SL ++F A G+ + I +++ ++ ++ RG+LE VR+ Sbjct: 112 WIENNKESWSPSHQQAVLASLRNNVFSAFGNTPVDTITPPDVLRTIRAIENRGSLEIVRK 171 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMR-TASIS 232 + QR N V YA TG P+ ++ A + ++MP++ +L QL+ + I Sbjct: 172 VLQRTNAVFRYAIQTGRATYNPAADMQGALKAKTVEHMPAVFDSELAQLLQDISSNQKIH 231 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 ++T+ + LT R E ARW E++ + +EW IPA RMKM R H VPLS ALAIL Sbjct: 232 VTTKLAIQFTALTACRGGEVRNARWQEVNLDTNEWHIPAERMKMRRAHIVPLSIQALAIL 291 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EG 351 L G F+FPS ++PM+ + A + G G HG RS S+ +E G Sbjct: 292 HRAGALWGEDGFVFPSIRDRSKPMSDNAMGKAFRDMGYRGKATPHGFRSSFSSMAHEQSG 351 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 F +VIE +LAH +KN+V+ AYNR++YLEQRR ++QWW + + ++ Sbjct: 352 FASEVIEKSLAHEEKNKVKGAYNRAEYLEQRRELLQWWGEKLHRLEN 398 >UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A1WW57_HALHL Length = 412 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 136/415 (32%), Positives = 214/415 (51%), Gaps = 8/415 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M R T LTD + + AKP + +L DG GL LL+KS+G K WQFRY RP + + Sbjct: 1 MGRGTNKLTDRQCRTAKPPEGKQQLKLTDGGGLVLLVKSNGGKQWQFRYRRP-SGREATM 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV- 117 G YP V LS AR+ R E++ LLA IDP + +K Q + A T++F VA WW+ Sbjct: 60 GLGVYPDVPLSKARERRDEARALLADGIDPIDQRKAQRSAAASADTHSFEAVAREWWDAV 119 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + V +A+ R LE+ FP +G ++ I+ +++A++ ++A +ET R+ Sbjct: 120 HRHKVVASHANRNLRRLEQYAFPKLGRRPVSAIEPPDVLEALRRIEALEHVETAHRVKTL 179 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTR 236 I +V YA TG P+ ++ P+ +++P+I P +L L+ + +TR Sbjct: 180 IGQVCRYAIATGRGSRDPTADLRGMLRSPKTRHLPAITEPAELGPLLRAIDGYRGQPTTR 239 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + RP E A W D ++ W + K PL A++IL ++ Sbjct: 240 AALQLAPIVFCRPGELRAAEWQAFDLSSGTWDYQPS--KDGDPLVTPLPRQAISILRELE 297 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 P+S ++FPS P++P++ T+ AALKR GG +V+HG R+ A T L E G+ + Sbjct: 298 PISRSSRYLFPSGRTPDRPISDNTLTAALKRLDYGGRMVAHGFRAAARTILVERLGWGIE 357 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410 ++E L H ++ RAYNR+ ++EQR M+Q WAD + S + R Sbjct: 358 IVEMQLGHRVRDAHGRAYNRTQWIEQRGVMLQQWADYLDELREASDTEPTADRDR 412 >UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VQL7_POLNA Length = 413 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 135/415 (32%), Positives = 209/415 (50%), Gaps = 16/415 (3%) Query: 6 KPLTDTEIKAAKPKDADY--QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 PLTD K K A + DG G+ LL+ +G K W+ Y +R + G Y Sbjct: 1 MPLTDIFTKNTKHSGAPAGDKHTDGGGMYLLVTKAG-KYWRMNYR--FAGKRKTLALGVY 57 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 PAVSL++AR+ R +++ LLA+DIDP ++E + + A NTF VA + +K + Sbjct: 58 PAVSLAEARQGRDKARKLLAQDIDPSAAKQEDRQATATAAANTFEAVAREFHALKAGGWS 117 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 E +A R E +FP IG + ++ IKA TL+ A++ V+ +G L T + L +V Sbjct: 118 EGHATKWLRMNELYLFPHIGTLPLSTIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFR 177 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 Y TG ++ P V++ A + K+ + + P + ++ + + T Sbjct: 178 YGVQTGRCESNPGVDLKGALQPHIAKHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLS 237 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAILEMM 295 L RP W ID + IPA MK + HTVPL+ AL +L+ + Sbjct: 238 ALFFQRPGNIRAMEWAWIDLDGQMLTIPAKSMKSSKHEKANGKPHTVPLARQALDVLKSI 297 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE--EGF 352 K L+G ++FP +PM+ T+NAAL+R G V+HG R++A T + E G Sbjct: 298 KQLTGHGRYVFPGARTGERPMSDGTINAALRRLDYGNNEHVAHGFRAMARTMMAERLSGI 357 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLS 407 P D++EA L H K + AY+RS+YL QR+ MMQ WAD + +G+ V+ + Sbjct: 358 PQDMVEAQLGHGKKGPLGSAYDRSEYLPQRQQMMQTWADYLDKLRTGAEVIQFKA 412 >UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWC6_JANMA Length = 414 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 142/409 (34%), Positives = 213/409 (52%), Gaps = 10/409 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + PLTD IKAAKPK+ YQL DG+G+ L I SGSK+W+ Y + T+ +F Sbjct: 1 MPKLATPLTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTF 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAV L++AR+ RA++K + + +DP + ++ + S A NTF VA W K Sbjct: 61 GHYPAVGLAEARRKRADTKKQIVEGVDPAQARRVEKAISATAAANTFEAVARMWHQNKLE 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 A++I R LE+D+FP IG I E+KA ++ ++ ++ RGA E RR Q ++ Sbjct: 121 QWQPRTANNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLRQIEKRGAAEIARRNAQVCSQ 180 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRT--ASISMSTRCL 238 + YA G+ + P + A + K +I +LP+ + T+ A + TR L Sbjct: 181 IFRYAIACGIAENDPVPALRGALKPRIKGVHAAILVAELPEFLETLNHNKARMFPVTRIL 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR--------DHTVPLSDGALA 290 +LT R +E E W E+D +W IP RMKM + DH V L A Sbjct: 241 MQLMMLTFVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWA 300 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 L ++ +GG +++FP++ P +P+++ + AALKR G G HG RS+A L Sbjct: 301 FLRELRTYTGGNQWLFPNQRDPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTL 360 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 G IE LAH +Y+R +LE+R+ MMQ +AD + A Sbjct: 361 GNDISNIERQLAHSSGEAYGASYDRESFLEERKIMMQGYADYIDAVSRK 409 >UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae RepID=Q8VQN9_ECOLX Length = 421 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 143/418 (34%), Positives = 224/418 (53%), Gaps = 21/418 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+AAKP D Y+L DG G+ LL+ +GS+ W+ RY + + + G YP VS Sbjct: 3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALGVYPEVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS+AR R E++ L+++ IDP E ++ + +F +A RW K + ++ Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRAKK--VVPDLQLSFEHIARRWHASNK-QWAQSHS 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + +SLE +FP IG+ IT + L+ V+ +A+ E RL QRI+ VM YA Sbjct: 118 DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 +G+I P++++ A ++++ P++ +LP+L+ + + TR M LL Sbjct: 178 SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFI 237 Query: 248 RPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEMM 295 R +E ARW EID + + W IPA R KM H VPLS A+AIL + Sbjct: 238 RSSELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL 297 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG--VLVSHGLRSIASTALNEEG-F 352 + +G IF P +P++ TVN AL+ G + HG R++A +AL E G + Sbjct: 298 QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLW 357 Query: 353 PPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 D E ++H ++N VR AY +++++LE+RR M+QWWAD + A I +KI Sbjct: 358 SRDAGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI 415 >UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_ACIB5 Length = 427 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 132/406 (32%), Positives = 203/406 (50%), Gaps = 4/406 (0%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL+DT + +P+ +Y+ DG+GL +K G K W FRY + + + G Y Sbjct: 25 KRRPLSDTVLANLEPESKEYRELDGEGLYFRVKPDGKKAWLFRYKKA-DGKWSWLGIGTY 83 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P +S + ARK E +++ +P ++E+ R E TF ++A W + K + Sbjct: 84 PELSGAGARKKAREIIKDISQGDNPIITKQERKRQELEQNNATFEVLAREWLDTKANTWV 143 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA-RGALETVRRLCQRINEVM 182 +D +LE+ IF G T IK + ++ +Q +G E V R+ ++ Sbjct: 144 KDTMTRNKGALEKHIFAIFGKRLYTSIKPIEWMNHLKGIQQHQGIYEQVNRVRAMCRDIY 203 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 +A+ TG ID P + K ++ K+NM + +LP L+ + + +M R Sbjct: 204 DFAKVTGRIDYNPLEGLQKFLQQGVKQNMSHVSEQELPALLRAINSYP-TMDVRMGLQLL 262 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 + RP E EA+W E D N W IPA RMK R+H VPL A+ IL +K Sbjct: 263 AMLFCRPTELREAKWQEFDLNQGIWNIPAERMKKRREHVVPLPRQAITILNELKTYETNS 322 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 E++FPSR ++P + AL+R G G HG R IAST LN GF IEAALA Sbjct: 323 EYLFPSRSDKSKPKSDTVFIMALRRMGYEGRQTPHGFRHIASTLLNNRGFDERHIEAALA 382 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 HV K+ V YN++ YL+ R+ M+QW+A+ ++ I+ +K Sbjct: 383 HV-KDGVAGVYNKAQYLDDRKIMLQWYANHLEEIADQRIIQFKKAK 427 >UniRef50_B7I6Z3 Site-specific recombinase, phage integrase family n=3 Tax=Moraxellaceae RepID=B7I6Z3_ACIB5 Length = 414 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 132/408 (32%), Positives = 205/408 (50%), Gaps = 13/408 (3%) Query: 1 MARKTKPLTDTEIKAAKPK-DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + PLTDT+IK AK + +L DG GL LLI + +K W+F Y RP TK+R Sbjct: 1 MPKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIG 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG+YP VSL+DAR R E++ LLA++IDPQ +K + ++ NTF VA W K Sbjct: 61 FGSYPEVSLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEW--ESK 118 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 E R L+ I IG I ++ ++ + + +G LET +++ + Sbjct: 119 QDFAESTIRGHKRLLQ-VINSNIGKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKVKCG 177 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCL 238 ++M Y TG + + ++ A + P+ K++ ++ + +L++ + + T+ Sbjct: 178 QIMRYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMA 237 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKI--PAARMKMNRDHTVPLSDGALAILEMMK 296 RP E A+W +ID W+ P + K H VP+ +L +K Sbjct: 238 LKIAPYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIK 297 Query: 297 PLS----GGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNE-E 350 L+ G E++FPS +PM+ T+N AL+R G + HG R+ A T L E Sbjct: 298 ELTYDPDGESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILEEVL 357 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +P ++IE LAH K+ RAYNR+ +LE+RR MMQ WAD + Sbjct: 358 NYPIEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCDQIKA 405 >UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHC8_THIDA Length = 425 Score = 407 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 140/414 (33%), Positives = 215/414 (51%), Gaps = 11/414 (2%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 + LTDT +K AKP D Y++ D GL LL+ +G K W+ Y +R + G Y Sbjct: 15 RAVALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDYR--FLGKRKTLALGVY 71 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-KTSV 122 VSL+ AR+ R +++ +LA DP E +KE R +Q A+ N+F VA W +K K Sbjct: 72 SDVSLARARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKW 131 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 T+ AD LE +FP +G + I +KA L+ ++ V+ RG T RL + ++ Sbjct: 132 TQSTADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIF 191 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASI-SMSTRCLFM 240 Y TG + P+ ++ A KP+ + P+I + + +R A+ TR Sbjct: 192 RYGVATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAY 251 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD---HTVPLSDGALAILEMMKP 297 + LLT R E A+W+EID+ A EWK+PA RMK + HTVPLS ALA+L +K Sbjct: 252 FALLTFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKN 311 Query: 298 LSGGREFIFPSRIKPN--QPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPD 355 L+G ++FP + ++ TV L + G G HG R+ A + L+E+G+ + Sbjct: 312 LTGHSPYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSRE 371 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 +E L H + + AY RS++L +RR MMQ WAD A ++G+ ++ Sbjct: 372 AMERQLDHKETDSTVAAYARSEHLPERRNMMQAWADTCDALETGAEIILLPRTA 425 >UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_SALA4 Length = 449 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 140/421 (33%), Positives = 223/421 (52%), Gaps = 19/421 (4%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 L +I+ AKPK+ Y++ DG GL L + GSK W+ +Y RP K+ + +FG YP Sbjct: 29 KMKLNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYP 88 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 ++L++AR R +K LL++ IDP+ QK + F +A +W T +E Sbjct: 89 TITLAEARAKRDAAKKLLSQGIDPKVEQKGAQAEIE--GAYLFETIARQWHASNLT-WSE 145 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 D++ + +LE+ IFP+IG I ++ L+ ++ V G + +RL QR+N +M + Sbjct: 146 DHSHRVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRF 205 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 L+++ P+ ++ A + + P++ P ++P+ + + + TR LL Sbjct: 206 GVQNDLLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLL 265 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAIL 292 T R +E ARW E++F SEW IP R MKM +H VPLS A I Sbjct: 266 TFIRSSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIF 325 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEE 350 + + LSG E IFPS P + M+ TVN+AL+ G + HG R++A AL+E Sbjct: 326 KRLHALSGKGEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSES 385 Query: 351 G-FPPDVIEAALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 + D IE L+HV++ V+ +Y S+YLE+RR M+QWWAD + A +GSI ++ Sbjct: 386 KLWNDDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDANKNGSITPYDFAR 445 Query: 409 I 409 + Sbjct: 446 V 446 >UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadaceae RepID=B1JDS4_PSEPW Length = 402 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 214/403 (53%), Gaps = 4/403 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I+ A+P+D Y++ D GL L + ++G KLW+ RY + G YP+V+ Sbjct: 3 LTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYR--FEGKAKMLGLGTYPSVT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+ AR+ R ++ LL++ IDP ++ +Q + + EA+ T +A W++ + A Sbjct: 61 LAHARERRDAARKLLSQGIDPSAYK-QQEKAAAEAQALTLETLAREWYDYNQPRWAPATA 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + LE DIFP IG E++ LV V+ ++ R A R++ Q ++++ + Sbjct: 120 SKALQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAFNVARKVRQWLSQIFRFGLA 179 Query: 188 TGLIDAVPSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G++ P+ ++ A P+ ++ P + +LP+L+ + A +++ LLT Sbjct: 180 KGVVAGNPATDLDVVAAHAPRTRHHPHVSEAELPELLEKLEAAQCDFTSKIAIRLLLLTA 239 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E A WDE D ++ W IPAARMK R H VPL A+ +L + L+G F Sbjct: 240 VRPGELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTGTYPLAF 299 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 P R ++PM+ TVN AL G G HG R + ST+LN G+ D IE LAH D+ Sbjct: 300 PGRNDRSRPMSENTVNKALSTMGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQ 359 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 + +R YN + YLEQRR MMQ WAD V A + V+ ++ Sbjct: 360 DSIRDTYNHAHYLEQRREMMQTWADHVDALAEQTSVVKFKARA 402 >UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enterobacteriaceae RepID=INTZ_ECOLI Length = 402 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 138/410 (33%), Positives = 216/410 (52%), Gaps = 11/410 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M++ PLT I AA+P+D Y+L D GL LL+ +GSK W+FRY+ L K+ Q Sbjct: 1 MSK--TPLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYW--LNKREFLQ 56 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 + G YP ++L +AR+ ES+ L+A I+P E +++ F VAE W+ + Sbjct: 57 AIGVYPLITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATR 116 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 +E YA + +LE+D++P +G SI +I A ++ +Q + R A E R+L +RI Sbjct: 117 VGGWSESYAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQARKLRRRI 175 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 E+ +A T L+ P ++ A + + + I ++P + A S+ + Sbjct: 176 GEIFKFAVITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERA-GSVQIQTA 234 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 +LT R AE RW+ I+ + +PA MK R H VPLS A+ +L+ Sbjct: 235 IRLLILTALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTR 294 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVI 357 SG F+FP R ++P+++ + AL+R G + HG R+ STALNE G + PD I Sbjct: 295 SGYSAFVFPGRF-MDKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWI 353 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLS 407 E LAHV K +R YN++ YL+QRR MMQ +AD + + +G+ Sbjct: 354 EIQLAHVPK-GIRGVYNQAAYLKQRRAMMQDYADAIDSILAGNGNPLEPE 402 >UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=C7SIL5_ECOLX Length = 420 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 137/422 (32%), Positives = 224/422 (53%), Gaps = 22/422 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ KP D +++ D GL LL+K GS+ W +Y + + ++ + GAYPAVS Sbjct: 3 LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPAVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR+ R + +LA +I+P + + + F VA W + +++ A Sbjct: 61 LSDARQQREGVRKMLALNINPVQQRAAER--GSRTPDKVFKNVALAWHKSNRK-WSQNTA 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + SL IFP IG++ ++E+K + ++ ++ +G LE R Q ++ +M +A + Sbjct: 118 DRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVH 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS-ISMSTRCLFMWQLLTI 246 GLID P+ N+G P +++ P++ ++LP+L+ + TR + L Sbjct: 178 QGLIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRLAVLLMLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW EIDF W IPA R KM H VPLS+ ++AIL+ Sbjct: 238 IRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQ 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV--LVSHGLRSIASTALNEEG- 351 +K ++G E IFP P +PM TVN AL+ G + HG R++A +AL E G Sbjct: 298 IKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGL 357 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410 + D +E ++H ++N VR AY +++++LE R+ MMQWW+D ++A + K + Sbjct: 358 WAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNK 417 Query: 411 LV 412 + Sbjct: 418 FI 419 >UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV Length = 385 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 124/389 (31%), Positives = 198/389 (50%), Gaps = 9/389 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT +I+AAKPK+ Y+L DG+GL L + SG K+WQ RY + + + G YP ++ Sbjct: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR ++ ++ IDP + +K + N+F + + W++ KK + YA Sbjct: 60 LQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYDHKKQVWSVGYA 113 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++ + + DI P IG + I +I+ L++ ++ + RGA+E + +R EV YA Sbjct: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 TG P+ ++ A + +KKN P + DQ+P + T S S+ + T Sbjct: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG-REFIF 306 R E +W +DF I A+ MK + H VP+SD + +L + ++ EF+F Sbjct: 234 RTKELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVIELLTTLSSITKPVSEFVF 293 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 R +P+ V +K+ G G+ HG R ST +NE +P D IE LAH + Sbjct: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 VR YN + YL++RR MMQWWAD + Sbjct: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 >UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157:H7 RepID=B3A9A3_ECO57 Length = 412 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 150/412 (36%), Positives = 234/412 (56%), Gaps = 6/412 (1%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 KPLT TE+K KP++ DY +YDG GL L + +G K+W+FRY P+TK+R + G +P Sbjct: 3 VKPLTVTEVKGMKPREKDYAVYDGFGLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFP 62 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK-TSVT 123 SL++AR++R E + ++A+ +DP +K + TF VA W+ KK + + Sbjct: 63 EFSLAEAREVRDELRRMIARGVDPVTEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELR 122 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + +I + + + P G SI +I A + A+ V + AL+ ++L R+NE+M Sbjct: 123 KPTLYNIEYEVYKYLVPFFGKYSIEKITAPVAINALDAVSDKNALQ--KKLISRLNEIMN 180 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR-CLFMWQ 242 YA N G + A P + I AF + K++ ++ ++LP+ + + + ++Q Sbjct: 181 YAVNCGALKANPLLKIKTAFTGKKNKSLAALPVERLPEFLSWWDSVPHTYQIAHNALLFQ 240 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT+ RP EA +A W EIDF++ W IPA +MK +R+H VPLS A++IL M+ + Sbjct: 241 ILTMVRPGEAIKAEWSEIDFDSGLWIIPAHKMKCHREHVVPLSSQAISILRTMQEI-KRG 299 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 ++F S + PM T+ + + G++ HG RS+ ST LNEEGF PDVIEAALA Sbjct: 300 RYVFFSSRTKDAPMGRNTIKTPIAASKFKGIVTLHGFRSMWSTLLNEEGFNPDVIEAALA 359 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV-LTHLSKIRLVG 413 H +++R YNR+ YLEQR+ MMQW D A G I + +R+V Sbjct: 360 HKSGDKIRDIYNRTIYLEQRKIMMQWVGDFFDDARKGVINRSGGMKGLRVVN 411 >UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M393_9ENTR Length = 420 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 133/419 (31%), Positives = 217/419 (51%), Gaps = 20/419 (4%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PL D I+ A ++ Y+L D GL L+I +SGS+LW FR+ ++ + +FG YP Sbjct: 1 MPLNDHIIQNAISQEKPYRLADSLGLYLVISNSGSRLWYFRFR--FNGKQNRIAFGPYPQ 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 ++++DAR+ R ++ LL I P EH+K + S + T TF +A W + +E Sbjct: 59 ITIADARRKRDAARKLLTSGISPSEHRKSEKAASSK--TRTFQHIALAWHSSCLNRWSEG 116 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A+ I L+R +FP +G I +I+ L + ++ V +G + R+ Q + ++M ++ Sbjct: 117 HANKILVCLQRYVFPYVGKKDIAKIETFHLAELIKEVNNKGVHDVASRIRQYLTKIMRHS 176 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 GLI P++++ ++ P++ L +L+ + R L Sbjct: 177 VQQGLIHYNPALDLEDIITPVVVQHYPALPLRSLSELLIKIDDYKGQELIRLALELSLHV 236 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILE 293 R +E ARWDE + W IPA R KM +H VPLSD A+ ILE Sbjct: 237 FLRASELRFARWDEFNMKIHIWTIPAKRKAVDGVRFSDRGSKMKEEHLVPLSDQAMKILE 296 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEG 351 +K +SG EF+F S N+PM+ T+N AL+ G + +HG R++A +ALNE G Sbjct: 297 RIKKISGESEFVFHSIRNLNRPMSENTINKALRVIGYCTKNDVCAHGFRTMACSALNESG 356 Query: 352 -FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 + D IE ++H D+N VR AY ++++YLE+R MMQWW+D + + ++ Sbjct: 357 KWSKDAIERQMSHKDRNNVRAAYLHKAEYLEERFEMMQWWSDYLSTTREKYVAPYIFAR 415 >UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria RepID=C6XEE3_METSD Length = 406 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 142/406 (34%), Positives = 213/406 (52%), Gaps = 10/406 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTK---QRT 56 MA+ LTD + A + +L DG GL L + ++G+K W+FRY+ + + Sbjct: 1 MAK---NLTDLACRKATCEGKTLSKLSDGGGLYLWVYANGAKYWRFRYFIHVEGGKKKEM 57 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 S G YP VSL+DAR + + L+ IDP +K ++ ++ +TF +A W+ Sbjct: 58 SLSLGVYPEVSLNDARVEARKYQGLVDNGIDPATAKKAKLLQTKAEAGDTFAEIAREWYR 117 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + TE +A DI R +E ++ P I I E++A +K ++ VQ RGA RL Sbjct: 118 KMMPTWTETHARDIERRIEINLIPFIPQKPIAELEAVDFLKPLEKVQERGATHLSHRLLI 177 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS--ISMS 234 I +V YA G + +G A KN P+IRP++LP+LM + M Sbjct: 178 NIRQVYKYAIAKGKCKYDVTPGLGNALIPHVAKNQPAIRPEELPKLMTDIADYHKLGEMK 237 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 + R E RWDE+D+ A+ W++P RMKM+RDH +PL+ ILE Sbjct: 238 VQLGLQLMAHVWLRTRELTFGRWDELDYEANLWRVPGERMKMDRDHLIPLTPQVKVILER 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPP 354 ++ L+ G E+I P R P+++ T+ AL R G + HG RS+AST LNE GF Sbjct: 298 LRVLARGSEYILPGR-NHLTPVSNNTLLYALYRLGYKSRMTGHGFRSVASTILNESGFNA 356 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 D IE LAHV +N VR AYNR++Y+++RR MM WW++ + + Sbjct: 357 DAIERQLAHVPENAVRAAYNRAEYIDERRKMMLWWSEYLDKCTAPK 402 >UniRef50_Q4K6S7 Site-specific recombinase, phage integrase family n=4 Tax=Proteobacteria RepID=Q4K6S7_PSEF5 Length = 413 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 197/408 (48%), Gaps = 4/408 (0%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL DT + +P+ +Y+ DG+GL +K G K WQ RY RP G Y Sbjct: 7 KRRPLADTTLTGLEPEAKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWA-WMGLGGY 65 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK-TSV 122 P VS + AR+ AE + ++ IDP E ++ AKT TF A+ W K+ + Sbjct: 66 PEVSGALAREKAAELRKTISSGIDPLEQKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGL 125 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + I L++DI PA+GD + EI + ++AR A + IN++ Sbjct: 126 APSTLNKIRTYLDKDILPALGDKPLDEITRTDCAELQASIEARDAHNVAEKCRTWINQIF 185 Query: 183 IYAQNTGLIDAVPSVNIGK-AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 A GL + P + A + P+ + P + +L + + ++ ++ R Sbjct: 186 GRAIGLGLTENDPGSRLRDIAAQAPKTQQHPHLLEPELGEFLTALKNTPSRLTARTAAWL 245 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + T +RP A W E D + + W PAA+MKM RD PL A+A L+ + L+G Sbjct: 246 CIWTASRPGMVRLAEWKEFDLDKATWTTPAAKMKMRRDFVCPLPHQAIAALKELHCLTGR 305 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 ++FP N ++ T+N G G LV HG R AST L E G+P + +EA L Sbjct: 306 SRWLFPGVGAKNPTISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQL 365 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 AH ++ + YN++ YLEQR MMQW+AD + A + G ++ K Sbjct: 366 AHKEE-GISGVYNKAQYLEQRITMMQWYADHLDALEQGKVIQGQFGKA 412 >UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria RepID=Q5P707_AZOSE Length = 415 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 120/392 (30%), Positives = 197/392 (50%), Gaps = 3/392 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD + +A K D Y++ D GL L ++ SG+K W++R+ L ++ + G YPA+ Sbjct: 2 LTDAKCRAVKATDKTYRVADSHGLCLEVRPSGAKFWRYRFR--LADKQNMHALGEYPAMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L DAR+ R E++ L+ K I+P H+ + A +TF V W + + +Y Sbjct: 60 LQDARRARDEARELVRKGINPSHHRGLEKAERILALGSTFETVTAEWIERNRPDWSANYI 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + + D+FP IG I ++KA ++ ++ V+ R + + + V +A Sbjct: 120 RQVRARMAGDVFPEIGQYPIADLKAAHVLAMLRKVEKR-SPTQAALVKTWVGGVFRFAVV 178 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 L + P+ + +A + Q + +R D++ + + A ++ + T Sbjct: 179 EQLREDDPTFPLRRAVKPTQVNHHAILRNDEIGAFLRAIAAAPGEVTVKEAVGLMWATAC 238 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E ARW ID +A W IP RMK ++H V L+ A+ IL ++ +G E +FP Sbjct: 239 RINEVTGARWAGIDLDAGLWTIPPGRMKAKQEHVVTLTRQAVEILRRVQVHTGTLEHVFP 298 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 R +PM+ + V +RAG G HG+R ST N G+ DVIE LAH ++N Sbjct: 299 HRSDRKRPMSGEAVRDLFRRAGYAGKFTPHGVRGTFSTIANGAGWRADVIELCLAHQERN 358 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 ++RRAYN + L++RR ++QWW DL A G Sbjct: 359 QIRRAYNHAQLLDERRELLQWWGDLSDQAKRG 390 >UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobacteria RepID=B8GNQ7_THISH Length = 422 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 128/401 (31%), Positives = 205/401 (51%), Gaps = 8/401 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA L+ +++ + Y L DG L L + SGSKLW++RY L + + Sbjct: 1 MA--MNLLSARKVETIPSQKEPYWLKDGGSLFLYVTPSGSKLWRYRYR--LGGKPAIYAI 56 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL AR R ++ L+ K + P ++ + E NTF VA RW Sbjct: 57 GKYPQVSLEAARTERDRARELVKKGVHPVVEKRVNISTQLEKNENTFEPVARRWMASN-V 115 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +E YAD + R+LE D+FP +G + ++ I+ L ++ V RGA + Q ++ Sbjct: 116 QWSEGYADQVKRTLENDVFPKVGKLPVSSIRTAHLRPVIKDVAERGAPTVAILIRQLCSQ 175 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + YA L D+ P+ + ++ ++P+ ++ P + ++P+ + + A T Sbjct: 176 IFAYAAGEELCDSDPTALLKRSVKRPRVRHHPPLPWQEIPKFLSRVDDA-GYRVTVIALR 234 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 LT R AE +A W E D +++ W +PA RMKM H VPLS A+ +L+ + L+G Sbjct: 235 LMALTYVRTAELRKAHWSEFDLDSAMWTVPAGRMKMRDPHIVPLSKQAIVLLKELHTLTG 294 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 G + +FP KP M++ T+N L+R G GG SHG RS A+T L +P + ++ Sbjct: 295 GGKVLFPGFRKPGTVMSATTLNKVLERMGYGGQFSSHGFRSTATTLLGLLSYPENRVDLQ 354 Query: 361 LAHV--DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 LAH K+ R Y+ + Y+ R+ +MQ WAD++ A G Sbjct: 355 LAHSKRKKDSSRAPYDHTKYIASRKIIMQDWADILDAMARG 395 >UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacteria RepID=B0RRY6_XANCB Length = 409 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 143/409 (34%), Positives = 213/409 (52%), Gaps = 8/409 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTDT I+ AKP +L DG+GL LL++ G++ W++ Y RP+T +R SFG YP Sbjct: 1 MPLTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPE 60 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL+DAR+ AE++ L+A IDP E +K + A N+F +VA W+ ++ + Sbjct: 61 VSLADARERLAEARRLVAAKIDPGEQRKAVKAAGEAAAANSFEVVAREWFAKQQKEWSPQ 120 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA+ I R L+ DIFP IG I I A L+K ++ ++ RGA+ET R Q V YA Sbjct: 121 YAEKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYA 180 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLL 244 TG +A P+ + A + + ++ ++ + ++ R L Sbjct: 181 VRTGRAEADPTGALKGALTPWRSMPFAAATTSEEATTVLRKIDISTSRPVVRSALRLAPL 240 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 RP E RW E+D +A +W+ K R H LS A+ IL + PL+G EF Sbjct: 241 LFARPGELVRMRWTELDLDAGQWRYFV--TKTKRTHIAALSTQAIEILRDLHPLTGRGEF 298 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAALA 362 +FP P + M+ + A +R G+ HG R +AST LNE G + PD IE+AL Sbjct: 299 VFPGGRDPRKHMSGNAILVAARRCGIEKDESTIHGFRHMASTLLNEMGHWNPDAIESALT 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD--SGSIVLTHLSKI 409 H VR YN++ YL++RR MMQ WAD + + + V+ ++ Sbjct: 359 HKMP-GVRGIYNQAQYLDERRKMMQSWADNLDTLKADAANKVVPFKHRV 406 >UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JSX8_PASHA Length = 413 Score = 397 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 155/406 (38%), Positives = 216/406 (53%), Gaps = 12/406 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKS--SGSKLWQFRYYRPLTKQRTKQ 58 MAR TK L T+I+ AK KD +Y L DGDGL L +K GSK+W F Y P TK RT Sbjct: 1 MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKIWIFNYTNPQTKNRTNL 60 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-- 116 + G YP ++L++AR + + L+ K IDPQE +K + ++ +TF VAE ++N Sbjct: 61 TIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAENRVNDTFRNVAESYFNGI 120 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 K+ + + W LE IFP IGD + EIK LV V + T+++L Q Sbjct: 121 YKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALVDIYSKVADKSN--TLKKLHQ 178 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 ++ VM +A G+I++ K F P+I ++LPQL + A +S T Sbjct: 179 LVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIELEELPQLFTDLHNAKLSKQTY 238 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM----NRDHTVPLSDGALAIL 292 L W LT RP EA A W EIDF W IP +MK R H+VPLS AL IL Sbjct: 239 ALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKMKGKADKKRPHSVPLSSQALKIL 298 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 EMMK S F+FP R ++PM++ TVN+ LKR G L +HG+R+ T L+ Sbjct: 299 EMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRNGYKDRLTAHGIRAFVKTFLSSRKV 358 Query: 353 PPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 V E+ L+H+ +++ YNR D+LE+R P+MQ D + Sbjct: 359 DRHVSESILSHLLEGGDDLENTYNRYDFLEERVPVMQLLGDYCEQC 404 >UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholderia ambifaria RepID=Q0BEM8_BURCM Length = 414 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 125/401 (31%), Positives = 205/401 (51%), Gaps = 7/401 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTD +I+ AK + +L DG+GL LL+K SGSKLW+++Y + + + G YP Sbjct: 1 MPLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYR--IAGKENVFAIGEYPT 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 SL AR R +++ L+ K + P ++E + TF V++ W K+ + TE Sbjct: 59 TSLQAARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTER 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + +I R LE D +P IG+ + I AH ++ ++ V+ RG+ +L Q ++ V YA Sbjct: 119 HFGEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 T D P+ + A KP ++ + ++L L + +T ++ Sbjct: 179 VITLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTT-IAIRLLMML 237 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E ARW+EID A+EW++P ++K R H VPL A+++L ++ + G R +I Sbjct: 238 FPRTVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYI 297 Query: 306 FP--SRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 P + M+ T+N AL + H R+ AST L+E G+ +V+E L Sbjct: 298 LPILHSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQL 357 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 +H DK+ R YN + YL +RR MMQ WAD + ++ ++ Sbjct: 358 SHKDKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALT 398 >UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID=C6ALW6_AGGAN Length = 413 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 152/407 (37%), Positives = 231/407 (56%), Gaps = 9/407 (2%) Query: 1 MARKTKPLTDTEIKAAK-PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MAR K LT+T+++ K + L DG GL L I +G+K W+FRY RP+TK RTK + Sbjct: 1 MARIVKGLTNTQVERVKYTPNGKNVLNDGKGLFLEIYPTGAKKWRFRYERPITKARTKFN 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G +P+++L+ AR R E LLA+ IDPQEH K++ + Q NTFL AERW K+ Sbjct: 61 IGDHPSITLAQARVKRDEYNALLAQGIDPQEHAKQKHQALQFQLENTFLKWAERWKENKE 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA-----RGALE--TVR 172 V D WR +E + ++G I I ++ L++A+ P++A G + T++ Sbjct: 121 KKVKADTLRKDWRRIEMYLLESLGQIPIDKVLPPLLIQALTPLEAMKDRRTGTADSDTLK 180 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASIS 232 R+ + NE++ YA N G I P +++ + ++ P I P++LP L+ + + Sbjct: 181 RVIRLANEILTYAMNAGAIPFNPCLSVKDIYSFAPAESHPHIEPEELPLLLTDISESKAQ 240 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 T+ L ++QLLT+ RP+EA+ A W E D W IPA +MKM H VPLS + +L Sbjct: 241 PRTKDLILFQLLTMVRPSEASNAEWAEFDLENKVWTIPAEKMKMKHPHKVPLSSQTIRLL 300 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF 352 + ++ +G + F+F SR K N+PMNSQ+VN AL G G +HGLRSI T + E+ Sbjct: 301 QHLQSQTGHKRFVFASRNKINEPMNSQSVNKALVDMGYKGKQDAHGLRSIGRTYIGEKQM 360 Query: 353 P-PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +V+E +AH + Y+++D+ EQR P+MQ W D V+ Sbjct: 361 DGYEVLEMCIAHKVGTSTGKIYDKADFFEQRIPIMQAWGDFVEQCAE 407 >UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria RepID=Q2N8A1_ERYLH Length = 409 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 131/410 (31%), Positives = 210/410 (51%), Gaps = 10/410 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD I+ AK Y+L D GL LL++ +G KLW+ +Y + + K + G YP + Sbjct: 3 LTDVGIRKAKAGPKAYKLSDSSGLFLLVERTGGKLWRMKYR--IDGREKKLAIGRYPEIG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS----VT 123 L++AR+ R ++ LA+ DP ++ Q ++ N F +A + +K Sbjct: 61 LAEARRRRDAAREQLAQGKDPSREKQRQKARAKLGAENNFASLAAEFCEKRKHDGSRAWA 120 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 A L + +IG + I +I+ ++ AV+ ++++G LE+ +R Q V Sbjct: 121 PATAKRCE-YLLSVLNSSIGHLPIADIEPADILTAVRRIESKGKLESAKRTLQLAGSVFR 179 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNM-PSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 YA T + + P+ ++ A P + + P +L+ + T+ Sbjct: 180 YAVATARLKSDPTRDLRGALMNPTVTHYGAVLDPAGAGELLRAIDGYEGQPITKLAMQLA 239 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 RP E A W EIDF+ + W IPA++ KM +DH VPLS A+AILEM L+G Sbjct: 240 PHVFVRPGELRHAEWSEIDFDEALWTIPASKTKMRKDHLVPLSRQAIAILEMAHRLTGPD 299 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAA 360 ++FPS +PM+ T+NA L+R G + +HG R++AST LNE G + PD IE A Sbjct: 300 GYVFPSVRTRKRPMSDNTINAGLRRLGYATDEMTAHGFRAMASTLLNESGKWNPDAIEGA 359 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410 LAH D ++VR AY+R + ++R MM+WW+D + G+ V+ + R Sbjct: 360 LAHGDSDKVRAAYHRGAHWKERVKMMKWWSDYLDQLREGAEVVPIKAAKR 409 >UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQ25_BRASB Length = 407 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 154/397 (38%), Positives = 219/397 (55%), Gaps = 8/397 (2%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTDT+ + AK + +L DG GL LLI G+K W+ Y ++ + G YPA Sbjct: 1 MPLTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRLAYRWH--GKQRTLALGVYPA 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L +AR R ++K +A DIDP ++E+ R ++ A NTF VA W K + + Sbjct: 59 VGLIEARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHENWKDARSPY 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA I R LE D FPAIG SI ++ L+ ++ V+ RG ET RRL Q + ++ +A Sbjct: 119 YAAQILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRFA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 TG PSV++ A + + ++ +LP + + + S T+ L Sbjct: 179 IVTGRAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKLALKLVTL 238 Query: 245 TITRPAEAAEARWDE---IDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 T R E +W+E +D N++ W+IPA RMKM +H VPLS A+A L ++ LSGG Sbjct: 239 TFLRTTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRELRTLSGG 298 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAA 360 IFPS K + M+S T+ AL R G G +HG R++AST LNE F D IE Sbjct: 299 SPNIFPSPGKGD-CMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNRDWIERQ 357 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 L+HV++NEVRRAYN ++++ RR MMQWWAD + A Sbjct: 358 LSHVERNEVRRAYNAAEWMPDRRRMMQWWADHITALA 394 >UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetobacter RepID=C6RSU9_ACIRA Length = 426 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 122/413 (29%), Positives = 210/413 (50%), Gaps = 18/413 (4%) Query: 1 MARKTKPLTDTEIKA----AKPK-----DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPL 51 M ++ LTD++IKA K D +L DG GL LLI+ +G+ +W+F Y RP+ Sbjct: 1 MPKQVISLTDSKIKAFLRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPV 60 Query: 52 TKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVA 111 +K+R + G YPA+SL+ AR+ R + + LLA+ DPQ ++ + + TF VA Sbjct: 61 SKKRNTMTVGNYPAMSLAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVA 120 Query: 112 ERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV 171 E + K + E E+ ++ +G++ I++I L K ++ + +G +E+ Sbjct: 121 ELY--KSKQRLAEATVKRNDGIFEK-LYRDVGNMPISDITPRDLAKVIEKDENKGHIESA 177 Query: 172 RRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTAS 230 R+ + ++V +A GL + + ++ + +K + ++ P L+ + Sbjct: 178 MRIRSKASQVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDIDHYE 237 Query: 231 ISM-STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM--KMNRDHTVPLSDG 287 + + L R E A+W +I+F + W ++ K DH VPLS Sbjct: 238 SQLVHVKLALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQ 297 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTA 346 A+AIL+ + +F+FPSR ++P++ ++N AL+R G + HG R+IA T Sbjct: 298 AIAILKEALNFTNNSDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAIARTL 357 Query: 347 LNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 L+E FP D+IE LAH ++ RAYNR+ +L++RR MMQ W+D + Sbjct: 358 LDEVLEFPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDYCDELKA 410 >UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria RepID=B1Y3M2_LEPCP Length = 433 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 143/434 (32%), Positives = 211/434 (48%), Gaps = 29/434 (6%) Query: 1 MARKTKPLTDTEIKAAKPK----DADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 MA T L D I+AA + A +L DGDGL L ++ +GS W++RY + Sbjct: 1 MA-ATNNLDDKSIRAAIKRAMKAQAGERLTDGDGLRLDVQPTGSAWWRWRYR--FGGKEG 57 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN----------- 105 S G YP SLS AR R E++ LA I+P E +K+ Sbjct: 58 MLSLGTYPDTSLSAARGRRDEARERLAAGINPSEARKDDKAAQALKAEAARLAAAGLPGP 117 Query: 106 -TFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA 164 TF A W S +E +A + L D+FP IG ++ E+ L+K + ++A Sbjct: 118 GTFEHAAREWHARMAPSWSEGHAGKVLALLVNDLFPFIGTSALAELTPPELLKHARRIEA 177 Query: 165 RGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLM 223 RGA+ET R + V + G D+ P+ ++ A P ++ +I P +L +L+ Sbjct: 178 RGAVETAYRALKAAGAVFRHGVQNGYCDSDPTRDLKGAIVLPVPEHRAAITDPARLGELL 237 Query: 224 HTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-------M 276 + + R L RP E +A W E D +A+ W IPAARMK Sbjct: 238 RAIDGYQGTPVVRSALALAPLVFLRPGELRKAEWAEFDLDAAVWTIPAARMKGRLKAKLN 297 Query: 277 NRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLV 335 DH VPL+ A AIL ++PL+G +++FP+ + P++P++ V +AL+R G + Sbjct: 298 GPDHVVPLAPQAAAILRDLQPLTGAGKYVFPNPLTPDRPLSDNGVLSALRRMGFDKDEMT 357 Query: 336 SHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 HG R+ A T E P V+EA LAHV + + RAYNR+ YL+QRR MM WAD + Sbjct: 358 GHGFRATARTIAAERLKIDPVVLEAQLAHVVADALGRAYNRTQYLDQRRDMMTRWADYLD 417 Query: 395 AADSGSIVLTHLSK 408 G+ V+ SK Sbjct: 418 RLRKGAEVVDLTSK 431 >UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL52_9BACT Length = 378 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 210/393 (53%), Gaps = 21/393 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ EIK A P++ Y + D +GL L I +G K W+ R+ + K + G YP +S Sbjct: 3 LTNVEIKRATPREKRYTMRDSEGLWLEITPAGKKTWKVRFK--AQGREIKHTLGRYPDIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT-EDY 126 L +AR R E ++ L + TF +AE W+ + V + Sbjct: 61 LKEARLKRDEIRLELVN--------------HKSVPEGTFKALAEEWFERQVVPVRTHGH 106 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 A I L+R I P +GD +I A L+ ++ ++ +G +ET R+ Q + +V+ Y Sbjct: 107 ARTIRSRLDRLILPYLGDKPPADIDAPELLAILRRIEDQGHVETAHRVSQIVGQVLRYGI 166 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG + ++ A + ++ P++ P ++ LM ++ S S+ RC ++Q+ T Sbjct: 167 ATGQARHDITADLKGALIPRKPEHFPTLTDPKKIGGLMRAIQAFSGSVVVRCAMLFQIYT 226 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E +A W EID + WKIPA RMK R H VPLS A+ +LE ++PL+GG E I Sbjct: 227 AVRPGEMRKAEWKEIDGD--LWKIPAERMKKRRPHLVPLSSQAIGVLEEIRPLTGGGELI 284 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 FPS +P++ TVNAAL+R G L HG R++ ST NE +P +VIE LAHV Sbjct: 285 FPSVRSKTRPISDMTVNAALRRMGYAQNELTGHGFRAMFSTIANECQWPSNVIELQLAHV 344 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 DKN VR AYN ++ L++RR ++QWW D + Sbjct: 345 DKNSVRAAYNHAELLDKRRELLQWWGDWLDGVR 377 >UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholderiales RepID=A1WLK0_VEREI Length = 421 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 131/401 (32%), Positives = 206/401 (51%), Gaps = 14/401 (3%) Query: 8 LTDTEIKAAK-PKDA-DYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD K A P D +L D GL L + SGSK W ++Y + + + G YP Sbjct: 2 LTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYR--FDGREKRLALGVYPD 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L DAR R +++ + +DP ++ + +++ TF +VA + KK S + + Sbjct: 60 VPLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLE 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA LE+DIFP +G + + +I A L++A++ V+ARGA E L + + Y Sbjct: 120 YARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRYG 179 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 TG D + ++ A K+M + + P ++ +LM +R ++TR L Sbjct: 180 IATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSAL 239 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAILEMMKP 297 RP + W+E+D AS WKIP+ +MK R H VPL+ A+A+L ++P Sbjct: 240 LFQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQP 299 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGV-LVSHGLRSIASTALNE-EGFPPD 355 L+G ++FP+ + P +PM+ TV AL+R G + HG R++A T L E D Sbjct: 300 LTGRGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSD 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 VIE LAH + AY+R++++ QR+ MMQ WAD + A Sbjct: 360 VIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDAL 400 >UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW0_9NEIS Length = 394 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 124/397 (31%), Positives = 197/397 (49%), Gaps = 7/397 (1%) Query: 6 KPLTDTEIKAAKPKDADYQ-LYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 LTD + K P D + L DG GL L I + G + W+ +Y +++ Q G YP Sbjct: 1 MKLTDNQCKHTPPPDKGVKQLSDGGGLYLQIDAKGRRYWRIKYTY--NQKQHTQHLGIYP 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK--KTSV 122 A+ L AR R + K+LL++ I+P+ HQ++Q R Q+ TNTF VA +W K K Sbjct: 59 AMPLKAARMERDKIKLLLSQGINPKTHQEQQQRAEQKRITNTFEHVARKWHTTKAEKGDW 118 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 +A + R +E + P +G +SI +I+ ++ A+Q V+ G + T ++ + + Sbjct: 119 KPAHATRVLRQIELYLIPPLGSLSIADIEPLDILHAIQNVEHTGKIATANKVYDIAHAIF 178 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCLFMW 241 +A L + + ++ + + +L L+ + + S + L Sbjct: 179 SFAARMKLCPYNAAAELKPELQQAKATPYRHVTDTGELTALLQAIDGYTGSPQVKVLLQL 238 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP+E +W +IDF A+ + A MK H VPLS ALA+L +KP++G Sbjct: 239 APLVFARPSELRLLKWADIDFQAACYHKAAHEMKNGIAHIVPLSRQALALLSSLKPVTGH 298 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 E++F + +P++ AL R G + HG R AST L+E+ + D IE L Sbjct: 299 YEYVFHN-KAAGKPLSEAAARKALSRIGWLDKVTLHGFRHTASTLLHEQQYSSDWIERQL 357 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 AH D N R +YN + +LEQRR MMQ WAD + + Sbjct: 358 AHKDPNTTRASYNFAKHLEQRRQMMQEWADFLDSLKD 394 >UniRef50_B9D1P3 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D1P3_WOLRE Length = 395 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 126/404 (31%), Positives = 202/404 (50%), Gaps = 17/404 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + PLTD EI+ KPKD Y+ DG GL + + SG K + Y P + + + Sbjct: 1 MPKIPIPLTDREIRGLKPKDKIYKKCDGRGLYIFVDPSGRKYFALEYKSPADNKIKRLNL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +P SL+ AR+ R + + + ID S+ + F +A+RW +K Sbjct: 61 GDFPEFSLAMAREERFKLEQKVRDGID-------VKHESEINEQANFKKLAQRWLEIKAA 113 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 SV + + R LE +P + SIT+I +++ ++ ++A+G+LE ++RL +N+ Sbjct: 114 SVEPNTLNRDKRLLEMYAYPFFENRSITDITVTDVIEILKKIEAKGSLEMMKRLYSLLNQ 173 Query: 181 VMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRC 237 + A + +I F+K ++KN ++ + L ++ S + T+ Sbjct: 174 IWQSAY--YIAPNNVIASINYRFTFKKVKEKNYATLTKNADIKALWQSIDEYSGDIRTKY 231 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + +LT RP A+W+ IDF+ IPA MKM T+PLS AL +L+ K Sbjct: 232 ALKFAVLTALRPFNIRSAKWEYIDFDEGVISIPAGDMKMREAFTLPLSRQALELLKEYKG 291 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE----EGF 352 + + ++F S + M+ T+N AL+R G +VSHG R++ ST NE G Sbjct: 292 YNLDQIYLFGSLYGSARYMSENTLNVALRRMGFSKDEIVSHGFRAMFSTVCNENIDAHGL 351 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 D+IE LAH +++R AYNR+ L Q R MMQWWAD + A Sbjct: 352 NFDIIEKCLAHKGTDKIRAAYNRAQNLAQMRAMMQWWADYLDAL 395 >UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriaceae RepID=Q0P7K9_ECOLX Length = 423 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 133/408 (32%), Positives = 224/408 (54%), Gaps = 22/408 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D +I++ KP D +++ D GL LL+K GS+LW +Y + + ++ + GAYPAVS Sbjct: 3 LNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPAVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR+ R + +LA +I+P + + + + F VA W + KK +++ A Sbjct: 61 LSDARQQREGIRKMLALNINPAQQRAAER--GSRMQEKMFKSVALEWHSSKKK-WSQNTA 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D + L R +FP IG + +TE+K+ ++ ++ ++ +G LE R Q ++ +M YA + Sbjct: 118 DRVLARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMRYAVH 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS-ISMSTRCLFMWQLLTI 246 GLI+ P+ N+ P +++ P++ ++LP+L+ + + TR + L Sbjct: 178 QGLIEINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVF 237 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLSDGALAILEM 294 R +E ARW EI+F W IPA R KM H VPLS+ ++IL+ Sbjct: 238 IRSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKR 297 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALNEEG- 351 +K +SGG E +FP P +PM+ T+N AL++ G + HG R++A +AL E G Sbjct: 298 IKEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGL 357 Query: 352 FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADS 398 + D +E ++H ++N VR AY ++++++E R MMQWW+D + Sbjct: 358 WSQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSE 405 >UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola DG893 RepID=A6F4S5_9ALTE Length = 437 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 135/395 (34%), Positives = 206/395 (52%), Gaps = 8/395 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 +TDT+ + AK KD Y+L D GL L I+ SGSK W++RY L + + G YP ++ Sbjct: 2 ITDTKARKAKAKDTTYRLADSGGLALEIRPSGSKFWRYRYR--LHGKAGMYTVGEYPTIT 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 +S+AR +R +K +A P E +K ++ + + NT V + W K + Y Sbjct: 60 ISEARAIRDWAKKCVANGEAPAEVKKRELAERRAEQANTLEEVGKEWIARNKAGWSVYYH 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R LE DI+P +G I +I ++ +Q V+ R A L Q + + +A Sbjct: 120 RQVTRMLEADIWPNLGKKGIRDITPAQMLAELQRVEER-APTVAVNLKQWLAAIYRHAIA 178 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC---LFMWQLL 244 T D P+ + A +KP+ K+ PS D+ +L + +++ R L Sbjct: 179 TLRADNDPTAPLRGAIKKPKAKHKPSYNLDEFGKLCRAIWPKEGAIAYRITEIAIRLLAL 238 Query: 245 TITRPAEAAEARWDEIDFN--ASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 T+ R E ARWD+ D W IP +MK H VPLS A+ +L ++ L+G R Sbjct: 239 TMARTVEVRSARWDQFDLESEEPTWTIPGEKMKRGVTHLVPLSSQAVELLRELEGLTGNR 298 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALA 362 + FP+ +P +PM++ T+N L+R G GG+ H R+ AST LN GF D +E LA Sbjct: 299 PYCFPNLRQPTEPMSATTINRVLERLGYGGLFSGHAFRTTASTLLNNYGFDGDWVERQLA 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 H ++N+ R +YN ++YL QRR M+QWWADLV Sbjct: 359 HTEENKSRASYNHAEYLYQRRIMLQWWADLVDTLR 393 >UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY10_HALNC Length = 427 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 132/421 (31%), Positives = 207/421 (49%), Gaps = 29/421 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IKA KP+ Y++ D GL L + +G KLW+ Y +R + G YP V+ Sbjct: 3 LTDTAIKALKPESKPYKVTDEKGLYLFVTPAGGKLWRLDYR--FEGKRKTLALGGYPDVN 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQV-------------------RNSQEAKTNTFL 108 L AR R E++ L+A DP E +K + + EA +F Sbjct: 61 LKQARVYRDEARQLIANGTDPAELRKAEKTTITESRREEAEAVKIEAMIQAGEALPGSFE 120 Query: 109 LVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGAL 168 + + W N+ +E Y + + L+ +++P +G + ++ A ++K +Q ++ARG + Sbjct: 121 EIGDEWVNMYLADKSEKYRNKVINRLKAEVYPYLGRAPVADVTAPMVLKVLQRIEARGII 180 Query: 169 ETVRRLCQRINEVMIYAQNTGLID-AVPSVNIGKAF-EKPQKKNMPSIR-PDQLPQLMHT 225 E+ R+ Q I +++ YA TG + ++ + KA P+ KN + P + L+ Sbjct: 181 ESAHRVKQNIGQILRYAIATGRRELFDVTMALNKAIAPMPKDKNHAAPTEPKDIAPLLRI 240 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 M S TR R E +W +IDF EW+ A+ K ++H VPL+ Sbjct: 241 MAGYRGSPITRAALTIAPCVFVRIGELRHMQWADIDFETFEWRYTAS--KTGQEHIVPLA 298 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--GVLVSHGLRSIA 343 +A L ++PL+G ++F +PM+ TVN ALKR G+ L HG R++A Sbjct: 299 RQVVAALIELQPLTGHSRYVFTGARSDTRPMSENTVNGALKRLGIDTQTELTGHGFRAMA 358 Query: 344 STALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 T L E F P+VIE LAH ++ + RAYNR+ +LE RR MMQ WAD + V Sbjct: 359 RTVLEEVHNFRPEVIELQLAHAVRDPLGRAYNRTKHLETRRKMMQVWADYLDELRDSKNV 418 Query: 403 L 403 + Sbjct: 419 I 419 >UniRef50_B6BKY5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKY5_9PROT Length = 400 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 142/407 (34%), Positives = 209/407 (51%), Gaps = 15/407 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR KPLT+T+IK AK K+ Y L DG GL L + +G K W+FRY + K S Sbjct: 1 MARTVKPLTETQIKNAKAKEKTYILSDGAGLYLEVNINGGKWWRFRYKY--NDKIKKVSL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAK-DIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G YP +L++AR+ R E++ +LA + DP K V +E TF AE + Sbjct: 59 GVYPDTTLANARRKRDEARNILANDNRDPF--IKIVVHKKEEVVQKTFQEWAEWYITEIS 116 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 T +++ + + ++D++P IG + +IKA ++K + ++ RGA+E+ R+ IN Sbjct: 117 TELSDTHITRTVKGFKKDVYPIIGSKRMNDIKARDIIKIMHIMKERGAVESARKTFSSIN 176 Query: 180 EVMIYAQNT--GLIDAVPSVNIG--KAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMS 234 V A + ID P+ +I Q N P I P +L L+ ++ + S Sbjct: 177 RVFAKALSNFPDEIDRNPTADIKLGDILGAKQTTNYPIITEPKELATLLKAIKEYTGDTS 236 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 T T RP ARWDEIDFN +W IPA++MK ++ VPLS + +L+ Sbjct: 237 TILALTMIAHTFVRPINIRLARWDEIDFNTKQWVIPASKMKTKKELIVPLSKQVIELLKE 296 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-F 352 K +FPS PM+ + AL+R G +V+H R I ST +E+G + Sbjct: 297 AKS---DSALVFPSIRSKTSPMSDNALVGALRRMGYSREEIVAHSFRGIFSTIAHEKGIY 353 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 DVIE LAH + V +AYNR+ YLE+R MMQWW+D + S Sbjct: 354 AHDVIETQLAHTVGSSVSQAYNRAKYLEERTKMMQWWSDYLTTLPSK 400 >UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_PSEA7 Length = 395 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 132/391 (33%), Positives = 200/391 (51%), Gaps = 4/391 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +AAKPK+ Y+L D GL L +K +G K W RY L + + + G YP+VS Sbjct: 2 LTDAHCRAAKPKEQLYRLNDFRGLYLEVKPNGVKAW--RYRFKLAGKGSWFALGDYPSVS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR E++ L+ + I+P ++++ + ++ NTF VA+ W +K E Sbjct: 60 LADARDKCEEARKLVKQGINPVQNRQVERIKREQDSANTFEAVAKEWLALK--DWEEVTK 117 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 L+R +FP+IG + + +I ++ + RGA + ++ + A Sbjct: 118 RRRLDMLQRVVFPSIGKMPVRQITPAHVLDILSKTAKRGAPTVAAEAKRTMSGIFELAVA 177 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 T D P + KA + ++ ++ Q+ +L+ T+ Sbjct: 178 TLRADNDPVWPVRKALPANKTQHKTALTTAQIGKLLTDFDNHRCGYQVNFCIQLMWWTLA 237 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 RP EAAEA W E D + + W IPA RMK R+H VPL A+ +L + +SG R +FP Sbjct: 238 RPGEAAEAEWAEFDLDKALWSIPARRMKARREHLVPLPRQAVEMLRRLHAISGDRMHLFP 297 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367 R N+PM++ ++ ALK G G HG R+ ST LNE G+ PD IEA LAH + N Sbjct: 298 GRDDRNKPMSAHSIRQALKALGWSGTYSPHGTRTTGSTRLNEMGYRPDAIEAQLAHAEPN 357 Query: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 VRR YN + YL++RR MMQ WAD ++ Sbjct: 358 SVRRTYNHATYLDERREMMQAWADKLELWKR 388 >UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BVL9_9GAMM Length = 441 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 132/424 (31%), Positives = 218/424 (51%), Gaps = 22/424 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+KT PL+D++ AKP++ DY LYDG GL L I+ SGSK+W+F+Y R + + Sbjct: 1 MAKKTIPLSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRA-NGKDGLMTL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +PA+SL AR R E + LLA IDP E+ +++ ++ F +A W K Sbjct: 60 GNFPALSLKTARDKRRELETLLANGIDPIEY--SEIQKAKLDNKYNFESIAREWHTAYKN 117 Query: 121 --SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + A+ +++E +FP +G I IK L++ ++ ++ G E V++ QR+ Sbjct: 118 TGRWGTETAERALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRL 177 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFE-KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 + +A + G I++ P+ + F + K+ P + ++LP+L + + + TR Sbjct: 178 TSIFAFAMSKGFIESNPAYGLQDIFILSKKTKHHPQLPLERLPELQAKLASDTGHPITRL 237 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLS 285 + L T R +E ARW E DF + W IP R KM H +PLS Sbjct: 238 CVEFALHTFARSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKTPHLIPLS 297 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--GVLVSHGLRSIA 343 + ALAI++ + SG + +FP P+ M+ T+N L+R G + HG R +A Sbjct: 298 NQALAIIKEIYKYSGHTQNVFPKNGDPHGFMSESTINKTLRRLGYDTNTEVCGHGFRGMA 357 Query: 344 STALNEEG-FPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSGSI 401 AL + F D +E ++H ++N VR AY +++++LE+R+ M+ WW+ + SI Sbjct: 358 CAALIQSKLFQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLDVTKETSI 417 Query: 402 VLTH 405 Sbjct: 418 SPYD 421 >UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaproteobacteria RepID=Q167M4_ROSDO Length = 409 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 143/400 (35%), Positives = 212/400 (53%), Gaps = 5/400 (1%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 PL+D +I+ K +D Y++ D D L +L+K +GSKLWQ +Y L + S GA Sbjct: 12 TPKMPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYR--LDGREKTLSIGA 69 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YPAVSL ARK R ++ ++A DP E ++EQ R +EA TF + + + ++ Sbjct: 70 YPAVSLQQARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEG 129 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 D + G IT I A +++ ++ V+A+G ET RL RI V Sbjct: 130 KSKATLDKTAYHLKLANHDFGKKPITAITAPMILRTLRKVEAKGNYETAHRLRARIGSVF 189 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMW 241 YA +GL + P+ + A +P +++ +I P L+ + ++TR Sbjct: 190 RYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQVTTRIALQL 249 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 L RP E A+W E D W IPA +MKM RDH VPL+D A+ +L ++PL+G Sbjct: 250 LALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGE 309 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEA 359 E++FPS ++PM+ T+NAAL+R G G + +HG R+ ST NE G + PD IE Sbjct: 310 SEYLFPSLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIER 369 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 ALAH ++NEVRRAY R + E+R + WWA + S Sbjct: 370 ALAHEERNEVRRAYARGAHWEERVKLSDWWAGRLDDFRSS 409 >UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QA94_PSYCK Length = 413 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 121/401 (30%), Positives = 198/401 (49%), Gaps = 11/401 (2%) Query: 6 KPLTDTEIKAAKP------KDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 PLT T I +P + DG+GL L ++ +G K W Y ++ + Sbjct: 1 MPLTHTVINKLQPSSTSIDTKRPDKHSDGNGLQLWVRYTGVKSWISAYRW--QGKQQTLT 58 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G YP +SL +AR+ E K L+A ++P++H+KEQ + N F +A+ W+ +K Sbjct: 59 IGTYPVMSLQNARQRNIEIKRLIADGVNPKDHKKEQQA--SQDGLNIFDNIAQSWYAERK 116 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 T + E + + RD+ P+IG +I +I A ++ + V++RGA E RR + + Sbjct: 117 TYLAESTFTRNYSAYMRDVKPSIGQKNINDITAPDILAIGKAVESRGANEMARRTIREVG 176 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 ++ +A GL P+ ++ +A + + N I QLP+L+ + + + Sbjct: 177 QIFKHAIRNGLATHNPATDLAEAIKPHKTTNHHRITSQQLPKLLTDINAYQGDVLVKLGL 236 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 + T R E W EID+ W+IPA +MK R H VPL+ A+AILE +K L Sbjct: 237 WFLCYTFVRTNEIRFMEWSEIDYKHGLWRIPADKMKAKRLHIVPLAPQAMAILEQIKELG 296 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEA 359 +++F + +P + AL G G + HG R +AST L+E+ F + IE Sbjct: 297 FSDQYVFFN-TSTRKPYSQSAFINALWNMGYKGKMTGHGFRGLASTTLHEKEFMHEAIEL 355 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 LAH +N++ AYN + +L R MM WA+ + A +G Sbjct: 356 QLAHDRENKISAAYNGAQHLPYRIDMMHQWANFIDDAYAGK 396 >UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5EXV7_DICNV Length = 401 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 147/401 (36%), Positives = 207/401 (51%), Gaps = 17/401 (4%) Query: 5 TKPLTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 LTD I+ AK Y +L DGDGL+L I GS W FRYY + + S G Y Sbjct: 9 IMRLTDKIIQTAKKPSRGYLRLTDGDGLSLKITDRGSYFWNFRYY--INGRERNMSLGRY 66 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRN---SQEAKTNTFLLVAERWWNVKKT 120 PA+S+ AR E + L + +DP +K++ ++ + TF VA W+ +K+ Sbjct: 67 PAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRP 126 Query: 121 SVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 E +A + +LE+ +FP IG I+ I L+K ++ + R ET R+ QRI Sbjct: 127 EWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIR 184 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 V YA T + P++ + K F K PS+ +L + T + T Sbjct: 185 AVFDYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALAL 242 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT+TR E +W E +EW IPA RMKMNR H VPLSD AL IL+ ++ L Sbjct: 243 RLLILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR 300 Query: 300 -GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVI 357 + N P++ T++ A+KR G G V HG R+ ASTA+NE G + PD I Sbjct: 301 RNNSPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAI 358 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 E LAH D+N VR AYNR++YLE+R MMQWWAD ++ Sbjct: 359 ERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIR 399 >UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TYD6_MARAV Length = 412 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 200/414 (48%), Gaps = 10/414 (2%) Query: 1 MARKTKPLTDTEIKAAK--PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M R LT+T +K A +L DG GL L I+ +G + W+ +Y + Sbjct: 1 MTRAANKLTETAVKHATFSKYGKRTKLADGAGLYLDIQKAG-RYWRLKYRY--GGKEKLL 57 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV- 117 + G YP VSL +AR R E+K LLA +IDP H++ + EA TF +A W Sbjct: 58 ALGVYPDVSLKEARAKRDEAKRLLADNIDPVTHRQREKAERVEATATTFKGIALEWLEHV 117 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K +V R LE +P +G + EI+ ++ ++ ++ +G ++ RL Sbjct: 118 HKKNVGATTYPKNKRRLEMYAYPKLGRRPMAEIEPPDVLAILREIEGKGHVDNAHRLKTL 177 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTR 236 I +V YA +TG + ++ P K+ ++ PD++ ++ + T S + Sbjct: 178 IGQVFRYAVSTGRATRDVTADLRGILPAPNVKHHAAVTTPDEIADMLKKIDTYWGSPTVC 237 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 RP RW+EID++A+ W K VPL+ A+ +L+ ++ Sbjct: 238 LALKLSPYLFLRPGNLRHMRWEEIDWDAATWT--TDTTKNGEPLVVPLARQAIDLLKELQ 295 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 L+G RE++FPS +PM+ + AL R L G++ +HG R++A T L E GF + Sbjct: 296 ELNGNREWVFPSGAGKGRPMSENAITGALNRLELQGIMSAHGFRAMAKTVLTERLGFRTE 355 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 +IE +AH ++ RAYNR+ +L +R+ MMQ WAD + +T + + Sbjct: 356 IIEMQMAHRVRDVHGRAYNRTTWLPERQAMMQQWADYLDNLKKPGNNVTPIHQA 409 >UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V414_SPHWW Length = 417 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 129/402 (32%), Positives = 205/402 (50%), Gaps = 7/402 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLT +I AAK + +L DG GLTL+++ SGSK+W+ +Y ++ G +P Sbjct: 1 MPLTHIQIAAAKASNGALKLSDGRGLTLVVQPSGSKVWRLKYRYE--GKQKTLHLGHWPK 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 V +S+AR R +++ L+ + DP ++ + N+F VAE W + Sbjct: 59 VGISEARIRREDARKLIEEGTDPALVKRFGPVAAKVKIVAGNSFRAVAEEWLEKCEREGL 118 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + R L +PA+G I I+ + ++ ++A G LE+ RRL ++ + Sbjct: 119 SQVTLNKIRWLLDKAYPALGSKPIEVIRPLDALAVLKKLEAEGILESARRLRSVLSRIFR 178 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCLFMWQ 242 +A TG I+ + ++ A P+ KN+ +I + L+ + S T Sbjct: 179 FAVATGRIERDVAADLRGAIATPKGKNLAAITTAREAGVLLRAIENYSGHEITAIALECS 238 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 RP E +A W E+D + + W IP + KM R H VPLS + L + L+GG Sbjct: 239 AHLFVRPGELRQAEWPELDADEAIWAIPPEKTKMRRPHWVPLSRQMMEKLHRLHDLTGGG 298 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEG-FPPDVIEAA 360 +++FP + PM+ TVN AL+R G G + +HG R++A+T LNE G + PD IE Sbjct: 299 KYLFPCLGNDDMPMSENTVNLALRRLGFGQDQMTAHGFRAMAATLLNESGQWHPDAIERQ 358 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 LAH++ NEVRRAY R +Y +R MMQWW+D ++ +V Sbjct: 359 LAHIETNEVRRAYTRGEYWPERVRMMQWWSDHIEELRRAPLV 400 >UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRV8_BORPD Length = 402 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 136/397 (34%), Positives = 213/397 (53%), Gaps = 10/397 (2%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 + L+D +K A+PKDA Y+L DG GL LL++ +GS+LW++++ L + + G YP Sbjct: 8 RALSDRAVKNARPKDAPYKLADGGGLHLLVQPNGSRLWRYKFR--LGGKEQVFAIGRYPD 65 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQE----AKTNTFLLVAERWWNVKKTS 121 V L++AR+ ++ L+A + P +++ E AK TF V + W + Sbjct: 66 VGLAEARERHLAARRLVADGVSPTAQRRDDRARMAEDAARAKAGTFKAVLDSWKATPARA 125 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 + R ++R + P +G + EI L ++ V A E R L +N + Sbjct: 126 LAPATIRQRDREIDRYLEPKLGARPVGEITRRELADLLKTV-ATDTPEVARNLRTHMNSI 184 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 +A + GLI P+ +A ++ + P++ D+L L+ ++ ++ +T+ F Sbjct: 185 FEHAVDVGLIAGNPTPG-PRALPARKQTSHPAVAMDELGALLASIDASACQPATKAAFRL 243 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LLT R E RWDEID +A EW IPA RMK H VPLS A+ +L ++ SGG Sbjct: 244 LLLTACRKLEITSGRWDEIDLDAGEWLIPADRMKTRTAHWVPLSRQAVELLRAVRAHSGG 303 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDVIEAA 360 +++FP R KPN PM+ +N L+R G + HG RSI ST N + G DVIE Sbjct: 304 -DYVFPHRDKPNTPMSPTALNEMLRRVGYRREMTVHGTRSIFSTWANAQPGANVDVIERC 362 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 LAH +++VR AYNR Y ++RR ++Q WAD++ AA+ Sbjct: 363 LAHAPRDKVRAAYNRHAYKDERRALLQSWADVLDAAE 399 >UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=cellular organisms RepID=Q3JXH9_BURP1 Length = 414 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 132/405 (32%), Positives = 210/405 (51%), Gaps = 6/405 (1%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + + PL DT IKA KPK A Y + DG GL L + +SGSK W++RY KQ+ + Sbjct: 6 MPKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRY-SLHGKQQPVVTI 64 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPAVSL+ AR+ ++A + P ++ + +T AE W + Sbjct: 65 GEYPAVSLTAARERARRYAEIVAGGVSPVADARKDRGAVK--SLDTIHEFAEYWIEQQMM 122 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + +Y R+LE+DI+PAIG S++++ ++ ++ RGA + + Sbjct: 123 GKSAEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKR 182 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + YA L+ + P+ I F Q + P+++ +++ + +SI + Sbjct: 183 IYEYAIARQLVTSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIH 242 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +LT+ R +E EARWDE D +AS W+IPA RMK +R+H V L+ A+A+L + Sbjct: 243 LLVLTMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRT 302 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEA 359 +++FPS ++P+ T+N A++ + V H R AST L+E G P D IE Sbjct: 303 SHQYVFPSSRGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEK 362 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA-ADSGSIVL 403 ALAH K ++ YNR++Y ++RR + WAD V A D G V+ Sbjct: 363 ALAHSIK-GIKGVYNRAEYADERRRITALWADFVDAQIDEGRKVV 406 >UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7HXY0_THIIN Length = 392 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 137/402 (34%), Positives = 203/402 (50%), Gaps = 15/402 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT + AAKP++ Y+L DG GL L + +G K W+ Y L ++ +++G YPA++ Sbjct: 3 LTVKAVDAAKPQERPYKLTDGGGLYLFVAPTGLKSWRANY--ELNGKQRTRTYGRYPAMT 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE-DY 126 L+ AR+ ++K P E TF + E+W +K S++ + Sbjct: 61 LAQAREAHTQAKST------PAE---AATVTPIAKVAPTFKAITEQWLKIKLPSLSNGKH 111 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + +LER +PAIG + I +I LV+ VQ VQ G +ET R+ RI V YAQ Sbjct: 112 QGQVAGTLERFAYPAIGKLPIDQIPRTKLVEVVQAVQKGGRVETAHRVAGRIAAVFDYAQ 171 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKN-MPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + G I++ + + + + + K M SI P + L+ + TR LT Sbjct: 172 DVGYIESHGAAGLVRVLQPRKVKKPMASIPPGEAGALLAAIDGYE-EPVTRLGLQLLALT 230 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E RW E+ + + W +PA RMK H VPLS A A+LE ++ L+G R + Sbjct: 231 FVRVGEMRGMRWSELREDGTVWVVPADRMKAGLPHVVPLSQQARAVLEQLRVLTGDRNLV 290 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALAHV 364 S ++P ++ T AL R G G + +HG R++AST LNE GF DVIE LAH Sbjct: 291 LDSPLRPGHALSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHR 350 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHL 406 + + VR AYNR+ YL+QRR +MQWWAD + Sbjct: 351 ETDTVRAAYNRAQYLDQRRGLMQWWADWLDRQRESDRPPVSA 392 >UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID=B2UB26_RALPJ Length = 415 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 115/412 (27%), Positives = 201/412 (48%), Gaps = 13/412 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT T I AKPK+ Y+L DG GL +L+ GSK W+++Y L+ +R G+YP + Sbjct: 7 KLTPTRINNAKPKEQPYKLTDGGGLFVLVHPGGSKAWRYQYM--LSGKRRSVLIGSYPEI 64 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ-----EAKTNTFLLVAERWWNVKKTS 121 +SDAR AE + ++ + DP EH+++ + + F + +W + + + Sbjct: 65 GVSDARDRHAEYRAMVEQGTDPAEHRRQDKAERKAKESLQEDEGLFKAFSLKWIDERLAT 124 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 TE Y I LER ++P IG ++ ++K L++ ++ R T + I ++ Sbjct: 125 KTEGYRSQIKSRLERFVWPVIGRKALEDVKPSHLLEIIEA--RRATPNTAEGVRVIIQQI 182 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 YA L+++ P+V + P+ ++ + +L + +T Sbjct: 183 YNYAIQKLLVESNPAVPLRGVITVPKAEHHRHLSESELGAFWRALGRQGAHPATTAAARL 242 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + ++ R +E A+W E D + ++W IPA RMK R H V LS A+ +LE+M+ +SG Sbjct: 243 LVYSMCRKSEVLRAKWAEFDLDKAQWDIPAERMKSRRPHRVYLSRQAIELLEIMRAISGD 302 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAA 360 ++ PS + P+ T+N KR G HG R A+T L E GF DV+E Sbjct: 303 GVYVLPSVKIASVPLAEATLNHLFKRLDFGVPEFSPHGTRGTAATLLREHGFSRDVVELL 362 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK---AADSGSIVLTHLSKI 409 LAH ++++ +Y+ + +RR +Q+ AD + A + V++ + Sbjct: 363 LAHTERSQTAASYHHHELEAERRKALQYLADEIDRQAAISAAGNVVSLKGRA 414 >UniRef50_A4VPC8 Site-specific recombinase, phage integrase family n=6 Tax=Proteobacteria RepID=A4VPC8_PSEU5 Length = 455 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 117/404 (28%), Positives = 202/404 (50%), Gaps = 13/404 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M LTD +IK+ KP D D++L DG GL LL+K +G KLW+++Y L + + Sbjct: 53 MP--ENLLTDAKIKSVKPTDRDWKLSDGGGLFLLVKPTGCKLWRWKYR--LQGKENLFAI 108 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVR-------NSQEAKTNTFLLVAER 113 G++P VSL++AR R +++ L+ + I P +++ + + A+ ++F VA+ Sbjct: 109 GSFPQVSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRARESSFAKVAQA 168 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 + K + + + P + +++I + ++ + GA Sbjct: 169 YLTEIKPVFAYSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKTHGAWA-AIH 227 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISM 233 + ++ + +A GL++A P ++ P ++ ++ +Q+ + +R Sbjct: 228 VKGDLSAIFEFAVVRGLVEANPIPSLRGLLRAPASESKAAMTREQIQKFYQALRGYRGYP 287 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 T LT RP EAA+A W+E DF + W+ PAA+MK RDH PLS A+A+L+ Sbjct: 288 ETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARRDHISPLSTQAIAVLK 347 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFP 353 ++ ++GG ++FP R + A++ LG H R+ ST NE GF Sbjct: 348 GLQRITGGGRYLFPHRSGKGFT-TPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFR 406 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 PD IE LAHV+ N+VR YN++ L+QRR ++Q WA + A+ Sbjct: 407 PDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSTAE 450 >UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46Z79_RALEJ Length = 418 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 139/413 (33%), Positives = 199/413 (48%), Gaps = 10/413 (2%) Query: 1 MARKTKPLTDTEIKAAK-PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M ++ PL D + + AK +L DG GL L + SG+K W+ +Y RP +K + Sbjct: 1 MPKRILPLADLQCRQAKYSTAGGNRLRDGGGLYLELLPSGAKKWRMKYQRPGSKSENLLT 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG YPAV LS AR+ R E++ LA DP + EA NTF VAE W + Sbjct: 61 FGDYPAVGLSAARERREEARAQLAVGTDPALARDLAKATVAEAARNTFRAVAEEWLKHRH 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + + YA + LERD++P +G I I L+ + ++ARGA E RR Sbjct: 121 DTWSASYAQKTKQLLERDLYPDLGQHPIASITPAFLLTVARKIEARGAYEMPRRALVTAG 180 Query: 180 EVMIYAQNTGLIDAVPSVN-IGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 ++ YA TG S + + +P K+ P + QLP L+ + + T Sbjct: 181 QIFQYAIGTGRASIDASAGMVAQLKPRPPVKHYPHVADTQLPDLLQRIDRYTGRPETIAA 240 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAI 291 +LT R E A W E+D +EW +P+ RMK H VPLS +A+ Sbjct: 241 VKLAVLTFIRGGELRYAEWSELDLEKAEWHVPSGRMKGRLWHKLSGTPHVVPLSRQTIAL 300 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG 351 LE +K +G +FP + +P+ + +N G G HGLR +AST LNE G Sbjct: 301 LEDLKQYTGHYALLFPGAVSVLKPVTGEAMNKVFHSIGFKGQQTVHGLRGLASTLLNESG 360 Query: 352 -FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 F P VIEA L+H + N+ AYN + YL +RR +MQWWAD + + Sbjct: 361 LFDPRVIEAQLSHKETNKTIAAYNHAKYLPERRRVMQWWADYIDQRARATTAP 413 >UniRef50_A7H0X5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0X5_CAMC5 Length = 396 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 114/398 (28%), Positives = 191/398 (47%), Gaps = 16/398 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D++IKA KPK+ Y++ DGD L + + SG+K + + + + + + S G YPA+S Sbjct: 4 LNDSKIKALKPKEKRYKISDGDNLYIQVMPSGTKTFIYEFKSRSSGRYKRISLGQYPAIS 63 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR+ R E + LA +P K+ +F V + W+ K+ V+ A Sbjct: 64 LLMAREKRLEFQKALANGDEPMSEAKQA--------MTSFEAVFDEWFKFKQKEVSTKQA 115 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 R ER P G I I +++AV+ + ET+ R I+++ +A Sbjct: 116 FTHKRYYERFFLPKFGKDDIKTITKRQILEAVESLNKEAKFETLDRALSSISQLFRWAVM 175 Query: 188 TGLIDAVPSVNIGK--AFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLFMWQLL 244 ++ P+ I K F+ P+ + +I D + +L++ ++ + ++ LL Sbjct: 176 NEYLEHSPTYGIDKNALFKMPKVNHYAAIFDDDGIRKLVNNIKNYDGDIRVITAALFGLL 235 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 + RP A+W EI+F W+IP +MKM H VPL A+ +L K EF Sbjct: 236 SAQRPFNVRSAKWSEINFEKKIWEIPKEKMKMKEAHIVPLCSQAIKLLSSFKKYEFRSEF 295 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALN----EEGFPPDVIEA 359 +FPS P++ +V + L+ G +V HG R++ ST + E G +IE Sbjct: 296 LFPSVKSTKIPISDNSVRSMLRNLGYTNDDIVPHGFRAMFSTICHEHIKEHGLEERIIEL 355 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 L H ++N+V+ AYN + L++R +MQWW D + Sbjct: 356 CLDHAERNKVKAAYNHAKNLKERAQLMQWWGDYLARLA 393 >UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LIX3_RHOVA Length = 392 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 134/392 (34%), Positives = 202/392 (51%), Gaps = 4/392 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +I+ KP + D++L D DGL LL++ +GSKLW+ Y + + G YP ++ Sbjct: 3 LSDLKIRTTKPTERDFKLSDADGLYLLVRPNGSKLWRLNYRHL--GKNKTLAIGKYPDIA 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS AR RAE++ LLA+ +DP ++ +V ++ A NTF VAE + +E Sbjct: 61 LSTARDKRAEARRLLAEGVDPSYRKQVEVAKAKVAAANTFEAVAEEYLASLARDRSEGTV 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 L + ++P +G I E++ H +++A+Q ++ RG ++ R I +V A Sbjct: 121 RANSHILRKKVYPLLGRRPIAELRPHEILEALQSIEDRGQVDMAHRARTLIGKVFQLAAL 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLFMWQLLTI 246 + P+V + + + +N S+ +Q L+ + T S + R ++ T Sbjct: 181 SDRAPTDPTVVLRGRLKSWRVQNRASVTSEQTFAPLLRRIDTYEGSPNVRAAMLFLAHTF 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R E A W EID W+IP RMKM R H VPL+ AIL M G ++IF Sbjct: 241 VRTVELRFATWSEIDLEDGVWRIPEERMKMGRPHDVPLTASTRAILRDMAKFRRG-DYIF 299 Query: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 S + T+ A+K G G + HG RS AS+ LNE G+ DVIE LAHV+K Sbjct: 300 VSAHVGKSVLGDGTLRKAMKSIGYQGRMTPHGFRSSASSILNERGYRSDVIEMQLAHVEK 359 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 N VRRAYNR+ Y +R MMQ W++LV Sbjct: 360 NAVRRAYNRTLYWNERVSMMQDWSNLVDGWRK 391 >UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombinase phage integrase family protein n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF6377 Length = 393 Score = 380 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 116/394 (29%), Positives = 188/394 (47%), Gaps = 5/394 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLT +I+ AKP A +L D GL L + G+KLW++R+ L + + G+YP Sbjct: 1 MPLTAVKIRHAKPGPAPIKLTDSGGLFLEVTPGGNKLWRYRFR--LAGKENTYAIGSYPD 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SLSDAR R ++ L+ +P ++ +NTF +VAE W + + T Sbjct: 59 LSLSDARAERDAARELVKLGRNPAHVRQTVKAQQLSENSNTFKVVAEEWIEKRLANRTLK 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 Y D I R+ D++P IG + EI A ++ + + R A + Q I+ V Y Sbjct: 119 YRDQIRRAFVNDVYPKIGRFPLREITAAQILVIITQMDKRDATTLALMVRQWISSVFCYG 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 T D+ P+ + A + + + ++L + + T L Sbjct: 179 VVTLRADSDPAAAVRGAISRKDVNHSRPMNLEELAEYFLAVGKYGGHRGTVIALYLLPLL 238 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E A W E D + + W IP+ RMK R H VPL + A+A+L ++ L+ G + Sbjct: 239 FVRTVELRLAEWSEFDLDKAIWIIPSGRMKRKRPHMVPLPERAIALLRELRSLTAGN-LL 297 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHV 364 FP P+QP+++ T+N AL+ L G H R+ AST L E + + IE L+H Sbjct: 298 FPGMKHPSQPISATTLNRALEYMDLRG-WHCHDFRATASTHLYESQLWRSEAIEMQLSHK 356 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + ++ + AYN + Y ++R MM WW ++ + Sbjct: 357 ESDKTKAAYNHAKYWDERSKMMVWWGHRLEPLIA 390 >UniRef50_C8NCE3 Phage integrase family site-specific recombinase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCE3_9GAMM Length = 401 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 128/398 (32%), Positives = 200/398 (50%), Gaps = 7/398 (1%) Query: 8 LTDTEIKAAKPKDA-DYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT+T+ + A D + +DG GL L + S G K W+ Y P +K++ SFG YP V Sbjct: 3 LTETQCRTAAAPDKNVRKYFDGGGLCLQVTSDGKKYWRLYYRMPGSKKQQTVSFGVYPKV 62 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK--TSVTE 124 SL AR+ R E K+L+A+ IDP+ K+ ++ A NTF VA+RW + + Sbjct: 63 SLKQARQRRDEVKLLIARGIDPKLAAKQLRQDRTVALENTFADVAKRWLEHRAEVKKWGK 122 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + LER ++P IGD +TEI+ +++ +Q +QA G +ET +L +V Y Sbjct: 123 QHQRATRSMLERYMYPRIGDYPVTEIEPTQILRVLQELQAAGKIETSHKLLSATTQVFRY 182 Query: 185 AQNT-GLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQ 242 A T + P+ ++ + + I P ++ +L+ + + S R L Sbjct: 183 AMITIRICKYNPAADLSELLVTGKSVPFRHITDPGEIGRLLVALDEYTGSPQARGLARLH 242 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD-HTVPLSDGALAILEMMKPLSGG 301 L TRP E RWDEIDF W+ ++ + VP S A I+ ++ ++G Sbjct: 243 PLIFTRPTEIRLMRWDEIDFEQRLWRRSDDETVRRKNVNAVPFSRQAWEIIAGLRLVTGR 302 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAAL 361 +++F + + N+P ++ LK G +V HG R AST L+ + + +E L Sbjct: 303 TDYVFCNIHR-NKPFSAGAEGKVLKSIGYHEKIVPHGWRHTASTLLHNQDYDSIWVEKQL 361 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 H DKNEVR YN +DYLEQRR M+Q WAD + + Sbjct: 362 GHTDKNEVRGTYNHADYLEQRRKMLQEWADYLDMLKAN 399 >UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y106_LEPCP Length = 429 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 144/431 (33%), Positives = 216/431 (50%), Gaps = 27/431 (6%) Query: 1 MARKTKPLTDT----EIKAAKPKDAD-YQLYDGDGLTLL-IKSSGSKLWQFRYYRPLTKQ 54 MA +DT E+KA ++ DG GL LL + G+ W+ Y + Sbjct: 1 MATAQIK-SDTGLRAELKAIVDGKKPARRIGDGGGLYLLPLVKGGAHGWRLDYT--FNGK 57 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA------------ 102 R S G YP LS ARK AE++ L+A+ DP EH+K + Sbjct: 58 RKTLSLGTYPDTGLSLARKKAAEARTLVAEGTDPSEHRKGVKEERERQHLAGQEAAQRAA 117 Query: 103 ----KTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKA 158 + + VA W + + TE +I SL+R +FP +G + EI + Sbjct: 118 AGLAEPGSLEAVAADWLQHRAGAWTEGTRHNIAGSLKRYVFPTLGRRPVGEIAPGEIRTC 177 Query: 159 VQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIG--KAFEKPQKKNMPSIRP 216 VQ ++A GA ET R+ QR+ + YA L+ A P+ + + F K+ P++ Sbjct: 178 VQRIEASGAAETAGRVFQRLRALYRYAVAHELVAADPTYPLKPSEIFRPRDTKHRPAMSA 237 Query: 217 DQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM 276 + P + + + R + +LT RP E A W EID A+ W+IPAA MKM Sbjct: 238 QEAPAFLRKLADYGGDPTVRNALLLLVLTAVRPGELRAAEWTEIDEAAALWRIPAAHMKM 297 Query: 277 NRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVS 336 +H VPLS ALA+LE M+ L+G + IFPS P +P + T+N+AL R G G + Sbjct: 298 KAEHLVPLSVQALAVLEEMRALTGTQALIFPSPFYPGRPFSENTMNSALARMGYKGEATA 357 Query: 337 HGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 HG+R++ ST+ NE G DVIE LAH ++++VR AYNR++Y+ +RR +M WW + V + Sbjct: 358 HGMRTLFSTSANEAGHRGDVIERQLAHEERDDVRGAYNRAEYMAERRRLMTWWGERVDSM 417 Query: 397 DSGSIVLTHLS 407 G+ V+ + Sbjct: 418 RRGAEVIPFKA 428 >UniRef50_Q0C1T8 Site-specific recombinase, phage integrase family n=2 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1T8_HYPNA Length = 409 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 123/389 (31%), Positives = 200/389 (51%), Gaps = 5/389 (1%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 T PLTD +I++ KP + DG L + ++ +GSKLW+F Y ++ + G YP Sbjct: 14 TMPLTDLKIRSLKPDGKPRRYTDGGNLFIEVRPNGSKLWRFAYK--FDGKQKLMALGTYP 71 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +SL+ AR+ RAE++ LL + IDP + K Q +TF +A + + Sbjct: 72 EISLARAREKRAEARALLIEGIDPMQQAKVNKLERQALTEHTFSAIAAELLDKNRREGLA 131 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 L +GD+ +T+IK ++ ++ V++ G ET RRL I++V Y Sbjct: 132 GATLSKKSWLVGIANADLGDLPVTQIKPTHVLVPLRKVESEGNYETARRLRAVISQVFRY 191 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLFMWQL 243 A T + P+ + A P+ + P+I + L+ ++ ++ T+ Sbjct: 192 AVATARAEHDPTAGLRGALIAPKVTHRPAIVDREKFAGLIRSIWAYDGAIETKAGLQLMA 251 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 L RP E + W E D W IPAAR KM R+H PLS A+ IL+ + ++G Sbjct: 252 LLYPRPGELRLSTWGEFDLRKRTWTIPAARTKMRREHKKPLSGAAVEILKRLHAVTGHEP 311 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 ++ S++ +P++ T+N +L+R G + SHG R+ AS+ LNE G + PD IEA L Sbjct: 312 YVLVSQLSRGKPISENTLNGSLRRLGYAKEEMTSHGFRASASSLLNESGKWHPDAIEAEL 371 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 AH+ +++R+AY+R+ Y +QR M WWA Sbjct: 372 AHMGADQIRKAYHRATYWDQRVEMADWWA 400 >UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonadaceae RepID=A1W8P6_ACISJ Length = 413 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 122/414 (29%), Positives = 195/414 (47%), Gaps = 14/414 (3%) Query: 8 LTDTEIKAA--KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD + K A P + D GL L + SGSK W ++ Y + + + G+YP Sbjct: 2 LTDKQCKNAICPPDKKRARFTDSLGLYLEVSPSGSKRWFWKTY--FDGKEGRMALGSYPT 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 SL+DARK R +K+ A +DP + +K + + +TF +A W + ++ Sbjct: 60 QSLADARKARDIAKLKKADGVDPVQERKLEKLKGSRSGGDTFQAIALEWHGRQVDQWSDT 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A R LERD+FP IGD +T I+ L+ +Q ++ RGA+ET R ++ Y Sbjct: 120 HAGRTKRQLERDLFPWIGDRQMTSIEPMELLATLQKIEERGAMETADRALMLCRQIWRYW 179 Query: 186 Q-NTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 G +V + + N P+I P + +L+ M S + R + Sbjct: 180 LPTAGNTQRDITVGLKNRLTPYRGTNFPAIVEPKRFGELLRAMHVYKGSHTVRTALLLAP 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAILEMMK 296 L RP W E+D +A+ W IP+ +MK H VPL A+ +L ++ Sbjct: 240 LLYQRPGNLRAMEWAEVDLDAALWTIPSMKMKRTKTEKEQGEPHAVPLPTQAVELLRNLQ 299 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 L+G ++FP + +PM+ +V +AL G G HG R+ A T L + P Sbjct: 300 ALTGRGTYVFPGQRDHERPMSDNSVRSALYSLGFGTEQSWHGFRASARTMLVDQLDLDPL 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 IEA LAH K+ R+YNR+ YL++R +Q WA+ + G+ V+ + + Sbjct: 360 AIEANLAHAVKDSNGRSYNRTQYLKKRYDQVQMWANYLDRLRLGAEVVPLVRQA 413 >UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacteria RepID=B1Y4T5_LEPCP Length = 427 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 136/390 (34%), Positives = 199/390 (51%), Gaps = 23/390 (5%) Query: 8 LTDTEIKAAKPKDADY--QLYDGDGLTLLI------KSSGSKLWQFRYYRPLTKQRTKQS 59 LTDTE + AK + +L D GL L + SGSKLW+++Y + + Sbjct: 2 LTDTECRNAKCPEGRAFVRLADAGGLYLEVKPPGAKTPSGSKLWRWKYRH--GGKEKLLA 59 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 GAYPAVS++ AR+ +A+++ LL DP E +KE +F VA +WW K Sbjct: 60 IGAYPAVSVAGARREQAKARALLDAGTDPGEARKEAKYAKLNEHETSFEAVARQWWAGWK 119 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + TE YA+ + R LE D FP IG + + A V+ + ++ARG E RR+ + Sbjct: 120 ANKTERYAEYVLRRLELDAFPVIGAKPVAGLTAPDFVRMAKKIEARGVGELARRIMETSG 179 Query: 180 EVMIYAQNTGLIDAVPSVNIG--KAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 +VM +A GL + P+ ++ + +N + +LP LM + S+ TR Sbjct: 180 QVMRWAVAHGLTERNPTADVKPGDILKPRTVENFARVGAAELPDLMRHINAYDGSVFTRL 239 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM------KMNRDHTVPLSDGALAI 291 LT R +E A+W E D +A+EW IP R+ R H VPL+ ALA+ Sbjct: 240 ALQLMALTFVRTSELIGAQWQEFDLDAAEWTIPPDRIGRKGRQGERRAHLVPLAPQALAV 299 Query: 292 LEMMKPLSGGRE-----FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 L +++ G +FP +PM++ T+ AL+R G G + HG R IASTA Sbjct: 300 LRLLQSARGADRCRGPALLFPGERDHERPMSNNTMLKALERMGYKGKMTGHGFRGIASTA 359 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRS 376 LNE GF DVIEA L+H++ N VR AYN + Sbjct: 360 LNEMGFRFDVIEAQLSHIEGNRVRAAYNHA 389 >UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=Q48NQ4_PSE14 Length = 391 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 194/387 (50%), Gaps = 5/387 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ AKP +L D GL L + + GSKLW++R+ L + + GAYP VS Sbjct: 3 LTDLKIRQAKPGKTSSKLTDSGGLYLEVTTGGSKLWRYRFR--LAGKENTYAIGAYPEVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LSDAR R ++ L+ +P ++ + NTF +V++ W + T+ Y Sbjct: 61 LSDARTERDAARDLVKSGRNPAHVRQTEKAQQLTENRNTFKIVSQEWIEKRLAQRTQKYR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D I R+ D++P IG + + EI A +++ + + R A + Q I+ V Y Sbjct: 121 DQIERAFVNDVYPRIGRLPLREITAAQVLEIITAMDRRNATTLALMVRQWISAVFCYGVA 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 T D+ P+ + A + + + + +L + ++T T + Sbjct: 181 TLRADSDPASAVRGAIRRNEVNHSRPMSLIELREYFRAVKTYGGHRRTVIALYLLPILFV 240 Query: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307 R E A W E D +A+ W IPA RMK + H VPL + ALA+L ++ ++ G +FP Sbjct: 241 RTIELRLAEWSEFDLDAALWTIPARRMKKRKIHLVPLPESALALLRELREITAGN-LLFP 299 Query: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVDK 366 P +P+++ T+N AL+ L G H R+ AST L E + DVIE LAHV++ Sbjct: 300 GMRHPKEPISATTLNRALEYMDLKG-WHCHDFRATASTHLYESELWSSDVIEFQLAHVEQ 358 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 + + AYN + YL R+ +MQWW + + Sbjct: 359 KKSKAAYNHASYLPARKALMQWWDNYI 385 >UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8S0_ACIBT Length = 433 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 130/423 (30%), Positives = 214/423 (50%), Gaps = 21/423 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA++ +PLTDT+ + KPKD +Y DG GL L ++ +G+K W FRY +R K + Sbjct: 1 MAKQVRPLTDTKCASLKPKDKEYVEADGGGLYLRVRPTGAKSWIFRYTNRGNDKREKITL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-- 118 G YPA+SL+ AR+ + E ++A+ +DP+E + + +++ NT V W + Sbjct: 61 GPYPALSLAKAREKKHEFLRMIAEGVDPKE--QLSILLAKKNNVNTLENVVRVWLDAYAV 118 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + ++ED + R E +FP D +I +I L A+ + + + +R+ + Sbjct: 119 RKPLSEDTKNKQLRKFENHLFPKFKDKAIEQITLRDLKDALNVIYD-HSPDNAQRIRASL 177 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQL-PQLMHTMRTASISMSTRC 237 +V YA I + ++ +K + + R L PQL+ ++ S + T+ Sbjct: 178 IQVYSYAVQHSYIQTNIARDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNPLTKL 237 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAAR------------MKMNRDHTVPLS 285 + L T R +E ARW+EIDF A W+IP R KM +H VPLS Sbjct: 238 CLLLGLHTFLRSSEIRFARWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHLVPLS 297 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIAS 344 ++ ILE + SG +F+FPS ++ T N AL+R G + HG R++A Sbjct: 298 KQSIEILEKVYQYSGDCDFVFPSLNNKRIFISENTPNDALRRMGYTKEEISFHGFRALAR 357 Query: 345 TALNEEG-FPPDVIEAALAHVDKNEVRRAYNR-SDYLEQRRPMMQWWADLVKAADSGSIV 402 +AL E F D +E ++H ++NE AY ++YLE+R +MQ W+D + A ++G + Sbjct: 358 SALGEMSIFSRDALEKQMSHQERNETVGAYTHIAEYLEEREKIMQIWSDWLSAIENGDYI 417 Query: 403 LTH 405 H Sbjct: 418 SPH 420 >UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepID=Q1Q875_PSYCK Length = 452 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 116/409 (28%), Positives = 197/409 (48%), Gaps = 16/409 (3%) Query: 8 LTDTEIKAAKPKDA-----DYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 L+D +I+ KP D + D GL LL++SSG++ W Y ++ K + G Sbjct: 2 LSDAKIRKLKPTDKCTPSRPDKYSDQQGLQLLVRSSGTRTWVSAYR--FDGKQQKTTLGT 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YP + L++AR A+ K L+A I+P+ +++ +++AK TF A W ++ +V Sbjct: 60 YPQMGLAEARVANADIKALVANGINPKNKKRQDKLANEQAK--TFNDYAVEWLEERERNV 117 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV------RRLCQ 176 + + +D+ P+ I++ ++ +++R E RR Sbjct: 118 KPRTYQQDYNRMHKDVIPSFEGIALKDVTFEDCKLMADNIESRTNNEGASPREVTRRTID 177 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 + ++ A LI+ + + + + K + K+M + +LP+L+ + TR Sbjct: 178 LVGNILRRAMRERLIEVNHTDGLKELYPKAKTKHMKHVELSELPKLLQDIEGYHGHDQTR 237 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + + R E +W+ IDF W++ +K+ R H VPLSD LA+LE MK Sbjct: 238 LGMKFLAYSFCRTIELRMMKWEHIDFPNRLWRVDIDNLKIARKHVVPLSDQMLAVLEEMK 297 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 ++G E++F +QP + + +N AL G GG HG R IAST LNE G+ D Sbjct: 298 HITGQYEYVFYH-TGMHQPYSEEFINNALDILGYGGKQTGHGFRHIASTNLNELGYMGDA 356 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 IE +AH K+ +R YN + +LE+RR +MQ WAD + V+ Sbjct: 357 IEKQMAHDKKSSIRAVYNHAQHLEERRKIMQVWADFLDLLRDKGEVIDF 405 >UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L9U1_9GAMM Length = 399 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 121/393 (30%), Positives = 195/393 (49%), Gaps = 6/393 (1%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +I+ AKP + Y+L DG GL L I+ +GSKLW++ Y L ++ + G+ VS Sbjct: 3 LTDFKIRGAKPAEKPYRLSDGGGLFLEIRPNGSKLWRYAYR--LDSKQRLLAIGSLQDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR ++K + DP +K S+E+ NT AE W++ + S + + Sbjct: 61 LADARAAMRQAKSQVKLGQDPVLQRKIAKARSEESALNTVAENAEDWYSGAEKSWSASHR 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D R L++ I P IG I E+ ++K ++ + G Q ++ V +A Sbjct: 121 DRARRYLDQRILPDIGKWPIREVTPADVLKLLRKAEKAG-PHVAIVTRQTLSSVFEHAIV 179 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 DA P+ + +A +KP + + + +L+ + T + T LT Sbjct: 180 NLRADADPTHPVRRAIKKPPVMHAVAHSAATMGKLLAGLDTYPGNRVTAIAIELLALTFV 239 Query: 248 RPAEAAEARWDEIDFNAS--EWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E A+W ID+ A KI A MK R H VPL+ A+A+L ++ ++G ++ Sbjct: 240 RTKELRTAKWANIDWEAESPLLKIDAGEMKKRRKHWVPLAPRAVALLRELQEITGAGTYL 299 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVD 365 FP++ P +PM+ + VN LK G+ + H R+ AST L+E G+P V++ LAH Sbjct: 300 FPNQRDPKKPMSREAVNMGLKYLGM-DEISGHDFRATASTWLHEAGYPSAVVDMQLAHAK 358 Query: 366 KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 N+ AYN +++L R MM WAD + Sbjct: 359 TNKTGAAYNHAEFLPDRIKMMDRWADHLAKQKQ 391 >UniRef50_B9NUX0 Site-specific recombinase, phage integrase family n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NUX0_9RHOB Length = 404 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 126/399 (31%), Positives = 196/399 (49%), Gaps = 5/399 (1%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTD +K +P Y+ D GL +L+K +GSK W Y ++ S+G YP Sbjct: 1 MPLTDIALKNMQPSGRAYKRSDAHGLYILVKPNGSKHWHLHYR--FLGKQKVMSYGPYPL 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL +AR+ R + L + IDP +KE+ S+ A+ F ++A + + Sbjct: 59 ISLKEAREKRDRDRKFLIEGIDPMVVKKERKLASERAQRGRFDILAAELLEKNRVEGRAE 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 L + +++ EI ++ ++ + G LET RL I EV YA Sbjct: 119 QTLKKKAWLVEMANKDLAKLAVMEITPSDVLAVLKKQEKAGNLETASRLRTTIGEVFRYA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLL 244 GL + P++ + A + + ++ +I P++L +L+ ++ S L Sbjct: 179 IACGLTENDPTIPLKGALVQKRPRSRSAITNPERLGELLCSIENYSGYRVVALGLRLLAL 238 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 RP E A+W+E D A +W IPA RMKM + H PL A+ IL ++ +S Sbjct: 239 LHVRPGELRFAKWEEFDLEAGKWTIPAERMKMRQPHVAPLPTQAIDILRELQRISHPDGM 298 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEEG-FPPDVIEAALA 362 + PS+ + P++ T N AL+ G + +HG R+ ST NE G + PD IE ALA Sbjct: 299 VLPSQRRRIDPLSENTFNKALRMMGYSKEEMTAHGFRATFSTLANESGEWNPDAIERALA 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSI 401 HVD NEVRRAYNR+ + E+R M QWWAD ++ + Sbjct: 359 HVDSNEVRRAYNRAAFWEERVEMAQWWADGLEKLQRAAT 397 >UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0FEDC Length = 418 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 127/423 (30%), Positives = 210/423 (49%), Gaps = 24/423 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA LTDT IK AKPK Y++ D GL LLIK SG K W++ + + R + Sbjct: 1 MA-----LTDTAIKNAKPKTKAYKMSDSGGLFLLIKPSGYKSWKYDFR--INSTRGSYTI 53 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL AR+ +++ L+A+ I+P+ K Q + + E +T F +W N K Sbjct: 54 GKYPDISLKQARQEHLQARELVAQGINPK-QIKTQRKVNDELQTKRFSYYMNQWLN--KQ 110 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + E D+ + +++++ P + +I E L+K + + RGA ET RL Sbjct: 111 VLAESTFKDLKQRIDKNLIPFLDKKNINEYTTADLLKIMLSISDRGAKETAIRLANVARR 170 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKK---NMPSIRP-DQLPQLMHTMRT--ASISMS 234 V G+I+ P+ + + KP K+ N I ++L L++ + A + Sbjct: 171 VFNEVLILGIIETNPAQGLAELLPKPDKRIDNNFGHITSTEELKILLNQIDAPSARQDFA 230 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEM 294 L RP +W+ I+F+ + K+PA +K N+ VPL+ A+ IL+ Sbjct: 231 VTQALKLMPLVFLRPYNIRFLKWEYINFDENIIKLPATELKNNKPLDVPLATQAVTILKQ 290 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG--------GVLVSHGLRSIASTA 346 M+ ++G + ++F + + P++ T ALKR G + SHG R AST Sbjct: 291 MQQVTGHKTYVFVTAQGKDTPLSENTTTNALKRIINPTTNKPYGTGYMTSHGFRHTASTM 350 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHL 406 LNE G+ D+IE LAH +K+ +R YN++ ++ +R MMQ WAD + +G+ ++ Sbjct: 351 LNELGYEADIIELQLAHTNKDRIRATYNKAKWMNKRIAMMQDWADYLDGIKAGTNIVPIK 410 Query: 407 SKI 409 +I Sbjct: 411 KEI 413 >UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C3XC22_OXAFO Length = 427 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 144/431 (33%), Positives = 221/431 (51%), Gaps = 24/431 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ KPL+ +IK KPK+ Y+L+DG GL L + SGSKLW+ ++ +P + + ++ S Sbjct: 1 MAKIIKPLSPIQIKNTKPKEKAYKLFDGGGLYLEVLPSGSKLWRLKFQKP-SGKESRLSL 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQE-------AKTNTFLLVAER 113 GAYP VSL RK R E++ LLA+ IDP E +KEQ QE F +A R Sbjct: 60 GAYPDVSLEQVRKKREEARRLLAQGIDPSEDRKEQKEAKQEQDVIRAFKDDRMFERIAMR 119 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAV----QPVQARGALE 169 + KK T+DY + + R E +FPAIG +I EI+ L + + ++G Sbjct: 120 LYASKKGRTTDDYRNTMLRQFELHLFPAIGKKNIAEIEGRELFTLFKAVSEKLNSKGKPM 179 Query: 170 T--VRRLCQRINEVMIYA--QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHT 225 T R+LCQ EV A +N+ P ++ K K Q ++M I +LPQ + Sbjct: 180 TYMARKLCQWAAEVYDLANVENSSFALNNPCRSVIKFLPKHQTEHMARIGFTELPQFIQA 239 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEW-KIPAARMKMNRDHTVPL 284 + + T+ L T R A+W + D N W + P K H +PL Sbjct: 240 LEAYGGHILTKSAIWMLLYTGMRQTSIRRAQWSDFDLNKGIWNRKPEKVDKN--IHIIPL 297 Query: 285 SDGALAILEMMKPL-SGGRE-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSI 342 + A+++L+ ++ L +G E +FPS M+ + A++R G + HGLRS+ Sbjct: 298 PEQAISLLKDIQLLATGNSENLVFPSVFAGQLKMSEAAIGQAIERMGF--QMTGHGLRSV 355 Query: 343 ASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS-GSI 401 ST LNE GF P ++E L H + + AYN + +LE+R+ MMQ WA+ + + + Sbjct: 356 VSTGLNELGFTPRLVEVQLGHKKGDAIEAAYNNAQHLEERKKMMQRWANYLNSFKEPKNE 415 Query: 402 VLTHLSKIRLV 412 LT+L K ++V Sbjct: 416 KLTYLVKKKVV 426 >UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Sinorhizobium phage PBC5 RepID=Q8W6M6_9CAUD Length = 433 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 135/400 (33%), Positives = 206/400 (51%), Gaps = 17/400 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTD +IK AK D DY+L DG GL L + S+G+K W+ RY + G YP VS Sbjct: 4 LTDKQIKNAKKADKDYKLADGGGLNLFVLSTGTKSWRLRYR--FDGKEKTLVIGNYPDVS 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DAR R +K L DP +K + ++ +TF ++A W ++K + E +A Sbjct: 62 LADARGEREAAKETLKSGRDPNVVKKIEKAIGKQQAADTFEVLAREWHKLQKPTWVEKHA 121 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 D+ SL D+FP IG + I +I A T++ ++ V+ R A ET RR+ QRI+ + +Y Sbjct: 122 SDVLDSLVNDVFPIIGQMPIRDIDAPTVLGVLRLVEQRDAKETARRIRQRISAIFVYGIA 181 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G P+ + A +K P+I D+ +++ T+ LT Sbjct: 182 SGRASEDPAAVVRGAMAPMKKGRQPAITNLDKAREMLVATWKTPSHPVTKLGLRLLTLTA 241 Query: 247 TRPAEAAEARW---DEIDFNASEWKIPAARMK--------MNRDHTVPLSDGALAILEMM 295 RP W DE+D + W IPAARMK RDH +PLS A+ + ++ Sbjct: 242 VRPGTLISTPWTELDEVDESDPVWVIPAARMKLLLQHKDDETRDHLIPLSKEAMETITVL 301 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPD 355 + L+G F+ P+ ++PM+ + L R+G V HG RS ST +NE +P D Sbjct: 302 RSLTGRGPFVLPNGRHAHKPMSENALGYLLNRSGYHHKHVPHGFRSTFSTVMNER-YPAD 360 Query: 356 --VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 VI+ LAH K++V AYNR+++LE+R+ + Q W L+ Sbjct: 361 RQVIDLMLAHTPKDKVEGAYNRAEHLERRKELAQIWDGLI 400 >UniRef50_B8F737 Phage integrase family site specific recombinase n=4 Tax=Pasteurellaceae RepID=B8F737_HAEPS Length = 416 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 145/408 (35%), Positives = 225/408 (55%), Gaps = 17/408 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L T+I+ AKPKD DY L DG GL L+++ SG+K++ F YY+P TK RT + G YP + Sbjct: 4 KLVGTQIRQAKPKDKDYPLSDGGGLRLIVRKSGAKVFVFNYYKPYTKTRTNFTIGEYPEI 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK--KTSVTE 124 SL ARK A+++ LLA++IDP ++ + TF +A +W+ + K +E Sbjct: 64 SLIQARKEHAKARALLAQNIDPVRQRELDKQEQANRLELTFEKMAVKWFEDRKLKADFSE 123 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 A D W +R I P G+ I+EI + A++P++ G LET+R+ +INEVM Y Sbjct: 124 RTAKDTWALFKRHILPHFGNYPISEITPLIAINALKPLERAGKLETIRKTIAKINEVMRY 183 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM----RTASISMSTRCLFM 240 A + GLI +IGK F+KP ++M +I+PD+L + + ++ M Sbjct: 184 ALHRGLIATNNLSDIGKEFDKPTPQSMNTIQPDELAEFLQAFYQKRDKGRFGLNVFYAVM 243 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAAR-MKM---NRDHTVPLSDGALAILEMMK 296 LLT RP+E A+A+W++ID W + K R H V LS ++ +L M+ Sbjct: 244 LVLLTGGRPSEIAKAKWEDIDEKERLWAYQVQKGNKNLPEGRTHIVTLSRQSIELLNKMR 303 Query: 297 PLSG------GREFIFPS-RIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 + F+F S K ++ +T+ A+ ++ L +HG+R + ST+LNE Sbjct: 304 HFNEVVNANIQSPFVFASVASKKTGHLSIETMRKAIIKSIGEDRLTTHGIRHLFSTSLNE 363 Query: 350 EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 + F D IE AL+H D+N +R +YN+++YLEQR M+Q WAD V+ Sbjct: 364 QNFNADWIERALSHKDRNRIRGSYNKANYLEQRFDMLQHWADYVEELA 411 >UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IGA6_BORPD Length = 657 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 120/423 (28%), Positives = 206/423 (48%), Gaps = 30/423 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA L+D ++ AK Y LYD D L+L++ ++G K W FRY ++ + + Sbjct: 15 MA-----LSDLIVRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRYSWL--GKQKRMAL 67 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YPA+SL +AR R +++ L+A+ IDPQ + ++ ++ A TF V + W ++ Sbjct: 68 GGYPALSLREARAERDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRK 127 Query: 121 SVTE---DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + E I R +D+ P +G +SI +I+ L+ + ++ R A T ++ Sbjct: 128 ELKEGRQSTLSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTW 187 Query: 178 INEVMIYA--QNTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTMRTASIS-M 233 N++ YA GL + P+ ++ KP + P + +LP+ + +R + Sbjct: 188 FNQMFRYALVIAEGL-EVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGW 246 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK-----MNR---------D 279 T+ LT R E A ++ D + W IP +K M + Sbjct: 247 QTQLGVRLLFLTGVRTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPP 306 Query: 280 HTVPLSDGALAILEMMK-PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHG 338 + VPLS A+ I+ + + ++++ R + + ++ T+N A++ G G L HG Sbjct: 307 YIVPLSLQAIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHG 366 Query: 339 LRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +R STALNE G+P ++A L+H D N+V AYN + Y+E RR MMQ WAD + + Sbjct: 367 IRGTISTALNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQ 426 Query: 399 GSI 401 G + Sbjct: 427 GEV 429 >UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY9_9GAMM Length = 429 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 129/417 (30%), Positives = 193/417 (46%), Gaps = 17/417 (4%) Query: 1 MARKTKPLTDTEIKAA---KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTK 57 MA+++ LT E+K + DG GL LLI + +K W+ Y RP+T++ Sbjct: 1 MAKQSNKLTAKEVKNLSFDVSGAKKQRHPDGGGLYLLIDETEAKYWRMDYRRPVTQKYNT 60 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 + G YP +SL AR R E K +LA IDP E + + R + NTF A W ++ Sbjct: 61 LAIGTYPTISLEQARSKRDEFKKMLANGIDPAEQRNNKKREQLQTLENTFSKFAAEWLDI 120 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTL-VKAVQPVQARGALETVRRLCQ 176 +K D+ + R L RDI P IG + + E+ L + RGALE+ RR+ Sbjct: 121 RKHEGKVDH--ETIRKLNRDILPFIGKLPVAELTTEQLERDVTDALVERGALESARRIKS 178 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRT-----AS 230 IN V+ +I P+ +I +P K N ++ + +L L+ Sbjct: 179 IINMVLKLPLKRRIITYNPAPDI--ILPQPTKGNHNAVTDEKELADLLRKTWRLTKDFPR 236 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + T RP E W+ +DF A+ K N+DH VPLS A Sbjct: 237 TRIRTELAIKLSAYIYQRPGEVRTLLWESVDFENRCLSFAAS--KTNQDHIVPLSIQAYD 294 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTAL-NE 349 IL+ ++ L +++FPS ++ M++ T+ LKR G G +HG R+ A T L E Sbjct: 295 ILKELEELRTTSKYVFPSVKTSSECMSTDTLTQVLKRLGFKGKHTAHGFRATARTLLDEE 354 Query: 350 EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHL 406 + D++E LAH K+ AYNR+ +L +RR MMQ WAD + G V Sbjct: 355 IEYRTDIVEHQLAHKVKDPNGTAYNRTKFLRRRREMMQLWADYLDTLRQGGDVSKFK 411 >UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales RepID=A9I0E1_BORPD Length = 536 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 130/425 (30%), Positives = 210/425 (49%), Gaps = 23/425 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L++T+IKAAKP +Y L DGD L L ++ +G K W +RY + + K G YP V+ Sbjct: 103 LSETQIKAAKPGQKEYMLNDGDNLYLRVRITG-KAWIYRYMKDS--KPIKLGMGPYPEVT 159 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT--SVTED 125 L+ AR E+ A +DP+E +++ ++ A+ +TF L+A W K +E Sbjct: 160 LAQARTKAYEANSQRANGLDPKEVREQLAEQTRIARLHTFELLARAWHASAKKDREWSEG 219 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA + R LE IFP +G I I +V+ + + RG LET +R+ + + V YA Sbjct: 220 YAQKVIRHLEIHIFPWVGHKPIEMILPTEIVRCLHRPKDRGNLETAQRVREAVQHVYQYA 279 Query: 186 QNTGLIDA--VPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQ 242 + G ++ P+ ++ +I P QL QL+ +R+ TRC Sbjct: 280 VDVGALEPSKNFVNKNTGGLPPPRSRHFAAITEPAQLGQLLRDIRSYHGQFITRCALRLA 339 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR---------DHTVPLSDGALAILE 293 + RP + A W++I W+ P +MKM H VPL AL IL Sbjct: 340 PMMFQRPGQIRLADWEDISLEVELWRCPPEKMKMREWQKRDSRTPAHIVPLPRQALEILR 399 Query: 294 MMKPLSGGREFIFPS---RIKPNQPMNSQTVNAALKRAGL--GGVLVSHGLRSIASTALN 348 + PL+G +F S R + ++ ++ T+NAAL+ G + HG R+ A T + Sbjct: 400 ELHPLTGPTGPVFRSMSRRSEKSRYISDNTINAALRTMGYDTKEEITGHGFRATARTMIR 459 Query: 349 E-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLS 407 E G+ PDVIE LAH E+ +Y+R+ ++ QR+ M+Q WAD + + G + + + Sbjct: 460 EHLGWEPDVIERHLAHTSDEELGSSYDRAAFIAQRKAMVQQWADFLDELEVGQMPMPEDN 519 Query: 408 KIRLV 412 ++ + Sbjct: 520 ILQFI 524 >UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZI9_ACILW Length = 401 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 126/407 (30%), Positives = 198/407 (48%), Gaps = 29/407 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+ +++ AK K+ Y L D DGL+L ++ +G K W +RY T +R + G YP +S Sbjct: 3 LTEIKVRQAKSKEKIYFLADDDGLSLKVEPNGRKSWSYRYSLAGTNKRPRMKLGEYPVMS 62 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR +R E K + H+K TF + E W K + ED Sbjct: 63 LKEARSVRDEYK--FNNYENKPLHKKYIK---------TFQDICEEWLEFKIKNSFEDEP 111 Query: 128 D-----DIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + L++D++P IG + EIK + LVK ++ +++R E V++ +N++ Sbjct: 112 RCGVIQLAKKCLDQDVYPNIGLMPFIEIKRYDLVKIIKKIESRNVKEPVKKAYSYLNQIY 171 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQ-KKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 YA G + + + K + KKN P + D+L + + + + ++ Sbjct: 172 DYAVAMGYCEYNIAHGLHKILVNNKIKKNYPHLNSDELSNFLAKLNQINTDPIIKKALLF 231 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----------DHTVPLSDGALAI 291 +L T R E D + WKIPA +K R D VPLSD AL + Sbjct: 232 KLYTGVRGGELLLCEPHHFDLDKKIWKIPALHIKQYRRKVILGHDIPDFFVPLSDQALEV 291 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNEE 350 ++ S G +++F S N+P++ T+N +++ G L SHGLRS ST LNE Sbjct: 292 VKSALVWSHGEKYVFSSPRNNNKPIHFNTLNLIIRKMGYTKNELTSHGLRSTFSTILNES 351 Query: 351 G-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 G F + IEA L+H DKN+ R +YN ++Y QR MMQWW D + + Sbjct: 352 GLFQSNWIEAQLSHTDKNKTRASYNHAEYFNQRMEMMQWWGDFIDSC 398 >UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria RepID=B2I529_XYLF2 Length = 410 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 118/393 (30%), Positives = 191/393 (48%), Gaps = 9/393 (2%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTDT +KA KP+D Y + D GL++ + +G +W+FRY L + K + G YPA Sbjct: 1 MPLTDTALKALKPRDRIYSVADERGLSVEVYPTGGIVWRFRYR--LAGRYEKLTLGKYPA 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL +AR R E+ L+A P ++ + +A T AER++ ++ +D Sbjct: 59 LSLRNARLKRDEAASLVAMGTSPARQKQLAKVTAADAM--TVRDFAERFFREIQSRDRKD 116 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 R L++DI P +GD + E+ A + + + +G T ++ + + YA Sbjct: 117 S-TMPRRYLDKDILPFVGDKPMREVTAEEIRSLIWRKKEQGFDATAGQIRGVLKRLCDYA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 GL+ P + + ++ PD++ + + + I + LLT Sbjct: 176 VTCGLMPTNPVLALPMRHVYKAVSRDRALSPDEIRLFLRAVWASRIRRQFKLALHLILLT 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 + R +E ARWD + + ++W IPA K + H V LS A+ + E ++ L+GG + Sbjct: 236 MVRKSELLLARWDHVHLDQAQWHIPAEHSKTGKPHIVYLSRQAVVLFEALRVLAGGSALV 295 Query: 306 FPSRIKPNQPMNSQTVNAAL-KRAGLGGV--LVSHGLRSIASTALNEEGFPPDVIEAALA 362 P +P +N AL K G+ H LR AST L+E G+ DV+E AL Sbjct: 296 MPGSGTLTRPFAHNALNHALGKAMQWQGIHAFTIHDLRRTASTWLHEHGWASDVVEKALN 355 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 H VR YNR++Y +QRR M+Q WAD ++ Sbjct: 356 HSIG-GVRGVYNRAEYADQRRQMLQCWADFIEK 387 >UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria RepID=Q3SF40_THIDA Length = 440 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 121/436 (27%), Positives = 200/436 (45%), Gaps = 37/436 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D++++ KP D + DG GL + I +G + W +Y P T ++ G YPA S Sbjct: 3 LSDSKLRTLKPADRVFSESDGGGLYIEIMPTGKRRWGLKYRIP-TGKQETIRLGDYPAYS 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQK------------------------------EQVR 97 L+DAR R + K L + + P ++ + + Sbjct: 62 LADARTWRDDCKALAGRGLSPMALKRGDPIPEDAAPAAKELAQFFIRNWCMKAVEKAKAK 121 Query: 98 NSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVK 157 ++ +T A RW+ +I R L++D PAIG I ++ ++ Sbjct: 122 EAEAKAADTVEAFAWRWYAEI-VEPANSNPRNIKRILDKDAIPAIGSKQIADVTVTDILA 180 Query: 158 AVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD 217 ++ RGA + + + + YA P+ I F K ++ P+ Sbjct: 181 ITDKIKNRGADQMALQTRNVLKRLFAYAIAREKTTFNPAAAIEAKFIAQAKSRDVALSPE 240 Query: 218 QLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN 277 ++ +L+ + +S+ + + +L + R +E EA+W+E+D +EW IP RMK + Sbjct: 241 EIGRLLRAIYQSSMKRAHKLALHLLILCMVRKSELTEAKWEELDLEKAEWAIPGERMKKD 300 Query: 278 RDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVS 336 + H VPLS A+A+ E +K L+ G E++FPSR +P+ +N ++ V Sbjct: 301 KPHLVPLSRQAVAMFEELKGLASGSEWVFPSRSSLKKPIAHNALNTVVRALEADVRDFVI 360 Query: 337 HGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 H R AST L+E GF D IE ALAH K +R YNR+ Y +QRR M+QWWAD V + Sbjct: 361 HDFRRTASTHLHEAGFNSDWIEKALAHETK-GIRGVYNRAQYADQRRDMLQWWADFVDSQ 419 Query: 397 DS---GSIVLTHLSKI 409 G +++ K Sbjct: 420 IQDGRGKVIIGPFGKA 435 >UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UDD1_9RHOB Length = 406 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 118/403 (29%), Positives = 193/403 (47%), Gaps = 4/403 (0%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTD +I+A KP D Y++ D +GL++ + G + W+FRY + G YP+ Sbjct: 1 MPLTDAKIRALKPADTLYRVSDSNGLSIEVTPKGDRYWRFRYR--FNGKAQMMGLGRYPS 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL AR R + LL + ++P ++ + + + + ++F +A + ++T Sbjct: 59 VSLKKARSKRDHYRELLDEGLNPSLERQTRQQELAQLEQSSFGSIATEFLRKRETEGAAP 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 R+L R + P + + I EI A L++ ++ ++RG + YA Sbjct: 119 ATLKKLRALLRLLLPDLAPLPIQEITAPQLLQVLRATESRGKHVVATEARALAGRIFRYA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 TG + PS + +A P+ K +I P+ L+ + T + + Sbjct: 179 IATGRCEQDPSYMLREALVTPRVKGYAAIREPEAFGALLARIETYEGDTLIKNGLLLLAH 238 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T RP + A+W++ D A+ W+ PA R KM+R H PLS + +++ M Sbjct: 239 TFVRPGQLRLAQWEDFDLEAALWRAPADRTKMSRFHITPLSSQVVCLIKEMHRNKADDTL 298 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAG-LGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 + SR+KP P++ T N AL+ G +G V V+HG R AST LNE+ + D IE L H Sbjct: 299 VMGSRVKPGHPISDMTFNKALRSLGVMGDVHVAHGFRKSASTMLNEQEYNYDWIERQLDH 358 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHL 406 V +N +R YN + YL+ R MMQ W+D + HL Sbjct: 359 VSQNRIRGIYNAAQYLQGRTRMMQEWSDYLDRLKDDGTRANHL 401 >UniRef50_A7JZW2 Site-specific recombinase, phage integrase family protein n=2 Tax=Vibrio sp. Ex25 RepID=A7JZW2_VIBSE Length = 471 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 142/428 (33%), Positives = 220/428 (51%), Gaps = 37/428 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA LT+T+IK A D +Y L DG L L I+ +GSK W F Y TK+R K Sbjct: 24 MA--INKLTNTQIKNAAKSDKEYSLSDGGNLYLRIRKNGSKNWLFIYTDFSTKKRKKMGL 81 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW----- 115 G+YP ++L + RK+ E + + K IDP+ +++Q + TF +AE+ Sbjct: 82 GSYPNMTLDEVRKVAKELRKQMTKGIDPKLFREKQKLDRLVESQLTFKAIAEKMLLKEEI 141 Query: 116 ---------------------------NVKKTSVTEDYADDIWRSLERDIFPAIGDISIT 148 + + + + L+R+++P +G++ +T Sbjct: 142 QETTNREKLIVEERERARIKGTVFGQDEIDRITNKVRSSHRKRLFLKRNLYPKLGNLPLT 201 Query: 149 EIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQK 208 I A ++ ++P+QA+G LE V+R C N+VM +A N+ +I + +I F K + Sbjct: 202 YITAAGVISVIEPMQAKGQLENVKRACCIANQVMKFAVNSNIIKSNCLADIKDNFAKSKV 261 Query: 209 KNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWK 268 +M + P++L ++M M + TRC F Q+ T+ R E A RW +I+ W Sbjct: 262 THMLKVPPNELGEVMAIMSNNQMKPVTRCAFEMQMHTMARADELAAMRWCDINVKNKLWT 321 Query: 269 IPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQ--PMNSQTVNAALK 326 IPA K R+H VPL+D L ILE ++P+SG +FPS + ++ VN++L Sbjct: 322 IPAFYTKGKREHLVPLNDYTLGILEFIRPISGEHIHVFPSDKPNTKFPHISPYAVNSSLN 381 Query: 327 RAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPM 385 L G LVSHG R IAST LNE F D IE LAH+DKN R +YN + YL++R + Sbjct: 382 LTSLKGRLVSHGFRGIASTYLNEHKQFREDAIEMCLAHLDKNTTRASYNSALYLDERYEI 441 Query: 386 MQWWADLV 393 +Q+W+D + Sbjct: 442 LQFWSDYI 449 >UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J426_COMTE Length = 416 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 124/417 (29%), Positives = 200/417 (47%), Gaps = 14/417 (3%) Query: 8 LTDTEIKAAK--PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LTD + + A P + D GL L + +GS+ W ++Y + + + + G YP Sbjct: 2 LTDAQCRNAVCSPGAKRERFSDAGGLYLEVSPAGSRRWFWKYRK--DGKEGRLALGRYPE 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 VSL+ ARK R +++ ++ IDP + +K + + +TF VA W+ + + Sbjct: 60 VSLTAARKARDAARLQKSEGIDPAKARKLEKLVNPTGVADTFKAVALEWYEKQVPRWSPG 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A+ + R LERD+FP IG+ + +I+ L+ +Q V+ARGA+ET R +V Y Sbjct: 120 HAERMHRQLERDLFPWIGEREMAQIQPMELLAVLQKVEARGAVETADRALMLARQVWRYW 179 Query: 186 Q-NTGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQL 243 + + + N P+I P + +L+ M R + Sbjct: 180 LPTASNTQRDITEGLKARLTPYRGTNFPAIVEPQRFGELLRAMYAYKGGPFVRTALLLAP 239 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMK-------MNRDHTVPLSDGALAILEMMK 296 L RP W E+D +A+ WKIP+A+MK H VPL A+A+L + Sbjct: 240 LLYQRPGNLRMMEWAELDLDAALWKIPSAKMKRSVQEKENGEPHVVPLPKQAVAMLRELL 299 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 PLSG ++FP + ++PM+ +V AL G+G HG R+ A T L + P Sbjct: 300 PLSGRGRYVFPGQRDHDRPMSDNSVRTALYSLGVGEEQSWHGFRASARTMLVDQLDLDPL 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLV 412 IEA LAH K+ R+YNR+ YL +R +Q WAD + G+ V+ K +++ Sbjct: 360 AIEANLAHAVKDANGRSYNRTKYLAKRFDQVQQWADYLDRLREGAAVIEFPQKNKVM 416 >UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q072_9GAMM Length = 402 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 126/404 (31%), Positives = 212/404 (52%), Gaps = 9/404 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R+TKPLT TEI+ AKP+D Y+LYDG+GL L + SSG+K W +Y +P TK++ + Sbjct: 1 MPRQTKPLTTTEIEKAKPQDKPYRLYDGEGLLLNVASSGTKTWYLQYSKPFTKKKDMVNL 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP V+L+DARK + + LL+KDIDP+ H +E+ R + F V E W KK Sbjct: 61 GRYPTVNLADARKQKNYCQELLSKDIDPKTHFEEEARRKEYEHRTDFKSVFEEWLPTKKY 120 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + + + +++ IG+ + ++ ++ ++PV++ G L + ++ +++ Sbjct: 121 --APKTVEKMENYI-KEMLAVIGNKPVNQVTTEDCMRVLKPVESAGHLTKLEKMRSMMSQ 177 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTASISMSTRCLF 239 + YA TG P +++ F P+ + P+ + L +L+ ++ + +TR Sbjct: 178 TIAYAIATGRAKENPCIHLRGVFMTPETTHAPAILDEAGLTRLVQSIYSYHGHFATRKAL 237 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMK--MNRDHTVPLSDGALAILEMMKP 297 ++ ++ RP E +W +IDF + W+ + + PL A+ IL+ MK Sbjct: 238 LFAIIMFARPGEIRHLKWQDIDFEYNNWQYTPNKTRKSTGVSMMSPLPTQAVEILKEMKA 297 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG-VLVSHGLRSIASTALNEE-GFPPD 355 E +FPS ++P++ T+N AL+R G S G R+IA T L E+ + Sbjct: 298 Y-KNAELVFPSSNSTSRPLSENTLNQALRRMGFENTEQTSQGFRAIARTVLEEKFKYDYR 356 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 IE L H ++ RAYNR +L++RR MMQ WAD + + Sbjct: 357 WIELQLGHQVRDSNGRAYNRVQWLDERREMMQKWADYLFSLIKK 400 >UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root RepID=A5EUW8_DICNV Length = 399 Score = 365 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 114/396 (28%), Positives = 182/396 (45%), Gaps = 9/396 (2%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ KP + Y++ D GL ++ +GS LW+ RY L +R + + G YPAVS Sbjct: 2 LSDAKLRKLKPTEKKYKIADSHGLFAVVMPNGSILWRMRY--VLAGKRRELALGKYPAVS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS+AR++ + + + +DP E ++ T E + K + Y Sbjct: 60 LSEARQIVLLYREQIERGVDPHAQHVE---RHKKQDGVTVAEAVELLLSEKAKYCSASYL 116 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA-Q 186 + L + G ++ E+ + + G T R+ E+ Sbjct: 117 ESCRSRLSNHVLSRFGARALAEVSEDEWRALINWLDNGGKNYTAIRVQDLAGELYKTVRL 176 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TGL A P + I +K +N P I P + +L+H + + + L Sbjct: 177 KTGLKIANPILEIRGTVKKKPAQNYPRITNPARFGELLHAIDYFNGRWQVYLALKFLPLV 236 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E W E+DF + W IPA ++KM R H VPLS A+AIL + L + + Sbjct: 237 FCRQIELRRMVWQEVDFERALWCIPAEKIKMRRAHLVPLSTQAIAILRQAEQLRC-SDLV 295 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAHV 364 F P QP++ T+ +AL+ G G +V HG R A+T LNE G+ +++ LAH Sbjct: 296 FCGVRNPRQPISVNTIGSALRTLGFGHDEMVGHGFRGTAATLLNELGWDSHIVDFQLAHW 355 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 ++ V AYN ++YL QRR MMQ WAD + + Sbjct: 356 QRSSVSSAYNHAEYLTQRREMMQAWADYCDELKAKT 391 >UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SUB2_ACILW Length = 396 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 130/394 (32%), Positives = 214/394 (54%), Gaps = 17/394 (4%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 PLTDTE + A+PKD Y+L D GL+L+I + G K W R + +R +S G YP Sbjct: 17 MPLTDTECRKAQPKDKQYRLSDLHGLSLIITTKGQKYWNVRVT--VHGERKSESLGPYPD 74 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL AR+L E K + E F VAE W+N +K + + Sbjct: 75 LSLKKARELAYELK------------HRYSRSVLHEDLKPYFEEVAEDWFNNQKETWSSK 122 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + ++ SL+ +++ A+ + I +I+A +++ ++ ++ARG+LE +R R VM YA Sbjct: 123 HISNVRASLD-ELYIALANKRINQIQAPEILQIIKKIEARGSLEIAKRTLSRCGMVMKYA 181 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 G P+ ++ A + + KN+ S+ ++P+ + ++ T + +LT Sbjct: 182 IAHGYRYDNPAGDLVYALKNKRVKNLASLSASEMPEFLRRIKAYPADAQTHHAIVLIMLT 241 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R +E +ARW+E D +W IP RMK H VPL+D +A L+ ++ L+ +E + Sbjct: 242 GVRVSELLQARWEEFDLEGRKWDIPEERMKNRLSHRVPLTDMMIAELQALR-LTHNQELL 300 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAHV 364 FP R+ +PM S+++ A +KR+G G + +HG RS+ ST +NE F PD IE LAHV Sbjct: 301 FPHRLNNKEPMRSESILAVIKRSGYAGRMTTHGFRSLFSTVVNESNLFNPDAIERQLAHV 360 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +N +R AYNR+ Y ++R +MQW+ + V+ + Sbjct: 361 PQNRIRSAYNRAQYWDERVRLMQWYGEQVEGWMA 394 >UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR6_9SPHN Length = 428 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 130/410 (31%), Positives = 195/410 (47%), Gaps = 17/410 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I++ P + DG GL + + +G + W F Y ++ + G YP +S Sbjct: 2 LTDTLIQSIIPAARPIKKADGGGLNICVLPNGRREWCFSYRFHH--KQKSITGGDYPLMS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 + AR R E K L+ DP +++ Q +T TF +A W K+ ++ YA Sbjct: 60 IDRARVWREEMKAALSAGKDPANIKRQLKYEDQAERT-TFRQLAYEWMVAKRPGWSDRYA 118 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I R LE DIFP IG +S+ I ++ A++ ++ RGA E R+ +E+ + Sbjct: 119 GVIERRLEADIFPTIGKLSVRSILPRDMLGALKCIEDRGATEMAHRVRAYCSEIFRFGIP 178 Query: 188 TGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G + P ++G K + I +LP + + S + W +LT+ Sbjct: 179 DGRVLTDPCRDLGTVMRKRAAVTHRSKIPIKELPHFYAALNADTGSRLSHLALRWTILTM 238 Query: 247 TRPAEAAEARWDEIDFNAS---EWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS---- 299 R E A+W E + W+IPA RMKM +H VPL A+A+L +K L+ Sbjct: 239 VRTTETRHAQWSEFEGLGGPEPLWRIPAERMKMRVEHLVPLPPQAVALLREIKELNVYGK 298 Query: 300 ----GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPP 354 +++FP ++S + L+R G+G HG RSIAST LNE G F P Sbjct: 299 YGNERFGQYLFPVIGNQGDTISSNRMLVLLQRLGVGDKATVHGFRSIASTVLNETGLFKP 358 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 D IE LAHV VR YN + YL RR M++WWAD + A+ S + Sbjct: 359 DWIELQLAHV-PGGVRAVYNAARYLSHRRQMLEWWADYLDKAEQASAAIA 407 >UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enterobacteriaceae RepID=INTB_ECOLI Length = 396 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 130/379 (34%), Positives = 206/379 (54%), Gaps = 21/379 (5%) Query: 32 TLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEH 91 LL+ +GSK W+ +Y ++ + G YP ++L+DAR R E++ LLA +DP + Sbjct: 2 HLLVHPNGSKYWRLQYRYE--GKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDK 59 Query: 92 QKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIK 151 +K +++K TF VA W K +ED+A + +SLE ++F A+G+ +I E+K Sbjct: 60 KKNDK--VEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVLKSLEDNLFAALGERNIAELK 116 Query: 152 AHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNM 211 L+ ++ V+ G LE RL QR +M YA +GLID P+ + A +++ Sbjct: 117 TRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHR 176 Query: 212 PSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPA 271 P++ ++P+L+ + + + TR LL R +E ARW EIDF AS W IP Sbjct: 177 PALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPP 236 Query: 272 AR------------MKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQ 319 R KM H VPLS ALAIL+ +K G + IF ++PM+ Sbjct: 237 EREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSEN 296 Query: 320 TVNAALKRAGLGGV--LVSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAY-NR 375 TVN+AL+ G + HG R++A ++L E G + D +E ++H+ +N VR AY ++ Sbjct: 297 TVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHK 356 Query: 376 SDYLEQRRPMMQWWADLVK 394 +++LE+RR M+QWWAD + Sbjct: 357 AEHLEERRLMLQWWADFLD 375 >UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUF6_ARCB4 Length = 405 Score = 364 bits (934), Expect = 5e-99, Method: Composition-based stats. Identities = 130/410 (31%), Positives = 213/410 (51%), Gaps = 22/410 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ KPLTDTEIK AK K+ DY+L DG+ L L++KS+G+K ++F + TK+R SF Sbjct: 1 MAKIVKPLTDTEIKKAKAKEKDYKLSDGENLYLVVKSNGTKFFRFDF--SYTKKRKSMSF 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL +AR+LR ++K L ++I+P E + +S +TF + E+W + + Sbjct: 59 GIYPDISLKEARELREKAKEQLKQNINPIEAK-----SSNFGNISTFKYITEKWLKLMTS 113 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + L ++PAIGD I+ I+ ++ +Q +Q + E R+ I Sbjct: 114 EWKHVTYELNENRLRMHVYPAIGDKPISSIEILDILNIIQKLQEKEYFEIAERILNVIER 173 Query: 181 VMIYAQNTGLIDAVPSVNIGK--AFEKPQKKNMPSIR-PDQLPQLMHTMRT----ASISM 233 + YA G +I K F K + ++ +++ +L+ +++ + Sbjct: 174 IYKYAVTYGYTKHNIIADIDKRTVFAKKIVIHRATLTKENEIKELLKDIKSYGELYKADI 233 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 ST RP W+E++F IPA +MK N+D +PLS AL IL+ Sbjct: 234 STIYALNIAPYLALRPYNIRLLEWNEVNFEKEYLDIPANKMKTNKDFVLPLSKQALEILK 293 Query: 294 MMKPLS-GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN---- 348 +KP S +++FPS +P + T+N AL + G + SHG R++ ST + Sbjct: 294 TIKPYSFDRSKYVFPSPTSNLKPFSDATLNHALMKLGYKDKITSHGFRAMFSTIAHEKIK 353 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNR---SDYLEQRRPMMQWWADLVKA 395 E GF D+IE+ LAH + N+++ AYNR Y ++++ +MQWW D + Sbjct: 354 EHGFHSDIIESCLAHAETNKIKAAYNRESKMKYYDEKKGLMQWWTDWLNK 403 >UniRef50_D0CDZ4 DNA integration/recombination/inversion protein n=4 Tax=Acinetobacter RepID=D0CDZ4_ACIBA Length = 402 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 133/406 (32%), Positives = 201/406 (49%), Gaps = 16/406 (3%) Query: 2 ARKTKPLTDTEIKAAKPKD-ADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 R L+ ++K AKP Y+L DG L L I SGSK W F Y RP +R S Sbjct: 3 TRGINKLSALQVKKAKPDPNKMYKLSDGGNLYLRIDQSGSKYWIFNYTRPFLGKRNDLSL 62 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL DAR +R + K L+ + IDP + E Q+ NTF ++AE W + ++ Sbjct: 63 GTYPEVSLEDARTIRDKYKKLIKQGIDPAMERIETKSQKQKEAENTFRVIAELWLHKREL 122 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLV-KAVQPVQARGALETVRRLCQRIN 179 +D ++ R L D++P I +++ ++ L K + + RGAL +RL +N Sbjct: 123 EQKQD--EETIRRLNHDVYPYISELTFPQLTLEILETKVFKRIVERGALSVAKRLKSDLN 180 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ-LPQLMHTMRTA-----SISM 233 ++ A+ LI P +I KPQ N P++ +Q L +++ + + Sbjct: 181 QIFKSARKKKLIQYNPIEDIE--LPKPQAGNFPAVTEEQDLAPMLNKIWNYSKLYPRCLL 238 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 +T+ +LT RP E + + +K A++ K + H VPLSD A ++E Sbjct: 239 TTQVALKISVLTFQRPGEIRMLKKEFYYREERCFKFTASKTK--QLHIVPLSDQAFDLIE 296 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGF 352 + L E+IF R ++ T+N+ALKR G GG +HG R+ A T L+E Sbjct: 297 SIIDLHPYSEYIFVGR-DGKTVISDNTINSALKRLGYGGEQTAHGFRATARTMLDEILEQ 355 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 D IE LAH K+ AYNR+ +L RR MMQ WAD +++ S Sbjct: 356 RVDFIEHQLAHKVKDNNGTAYNRTKFLNNRREMMQEWADYLESLLS 401 >UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVD1_ACILW Length = 399 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 117/397 (29%), Positives = 190/397 (47%), Gaps = 6/397 (1%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K +PL++ + + P++ DY+ DG GL L+K SG K WQ+RY + GAY Sbjct: 7 KKRPLSEKTLSSLVPEEKDYRELDGVGLYFLVKKSGVKNWQYRYKNS-EGKWAWMGLGAY 65 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P VS AR+ E L+K + +K + +E ++ F + W + K + Sbjct: 66 PQVSAQLARQKAREFTSALSKGES-LKSKKVLLEERKELESFYFENLMREWLDTKSSKWG 124 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQAR-GALETVRRLCQRINEVM 182 E +S+E+ I P G + EI Q +Q G + +L + Sbjct: 125 EATYTKAQKSIEKHIIPVFGQGNYKEITPKEWFDFFQGLQRTLGIHTQIEKLVSYVRGCY 184 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 +A+ G I++ P + K + + NM + D+LP L+ +R + + Sbjct: 185 DWAKFKGKINSNPIEGMSKHLDAYESGNMDFVTVDELPALLKKIRN-NKKRAIGIGLELL 243 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 ++ RP E A+W++ DF + W PA K ++H VPLS + +L ++ + Sbjct: 244 MMLFPRPGELRMAKWEQFDFKKALWTKPAEMTKTRQEHQVPLSKQVITLLTELRSIQPES 303 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPD-VIEAAL 361 EF+FPSR+ N+ ++ T N AL R G G HG R +AST LN+ + VIE L Sbjct: 304 EFLFPSRLSVNKTISDMTFNLALNRLGYKGKQNPHGFRHLASTILNDAFSDQEQVIEVCL 363 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 AH K V+ Y++S +L++RR +MQWWAD + + Sbjct: 364 AHKKK-GVKGVYDKSQHLDERRVLMQWWADYLDELVN 399 >UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE42_ECOK1 Length = 418 Score = 360 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 108/403 (26%), Positives = 191/403 (47%), Gaps = 17/403 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP--A 65 LTDT++K KP+D Y++ D DGL + + +SG+ +++ Y + +R G Y Sbjct: 2 LTDTKLKNLKPQDKLYKVSDRDGLYVAVLTSGTVSFRYDYR--INGRRETLVIGQYGRDG 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL++AR+ +K LL P +++ ++ + TF + + + + + Sbjct: 60 ISLAEAREELIAAKKLLKAGQSPAAAKRDGIK--KIRGAETFAVHTDSYMKH--VILADS 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 ++RDI P +G+ + EI + + RG T + + I+ V +A Sbjct: 116 TRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + G P+ +I + K ++ P+++ T+ + + L+T Sbjct: 176 NDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLIT 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 + R E A WDEIDF W IP+ RMK +R H + L A IL ++ +GG E++ Sbjct: 236 MVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYL 295 Query: 306 FPSRIKPNQPMNSQTVNAALKRA--------GLGGVLVSHGLRSIASTALNEEGFPPDVI 357 P R +P+++ +N+ + R H +R AST L+E G+P D I Sbjct: 296 VPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWI 355 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 E ALAH ++ VR YN+++Y QR M+Q WAD++ + +G Sbjct: 356 EKALAH-EQKGVRAVYNKAEYARQRAYMLQQWADMIDSWINGE 397 >UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI75_9BACT Length = 398 Score = 360 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 113/404 (27%), Positives = 188/404 (46%), Gaps = 14/404 (3%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT +++A + DG L L + GSK W R+ + +R G +P V Sbjct: 3 KLTFGKLRAL---NEPGLYGDGGTLFLKVSPGGSKSWVQRFT--IKGKRHDVGLGGWPVV 57 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE-D 125 SL +AR+ +++ +A DP +++ S+ A TF VA +++ Sbjct: 58 SLQEARERAFDNRRAVAHGRDPLAEKQK---ASKAAAVPTFRAVARKYYEENLPRWKAGR 114 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + D + +E+ FP GD+ + + +++ + P+ E R+L R+ ++ + Sbjct: 115 HTDRWLQVVEKYAFPVFGDVPVDRVGREDVLRMLTPIW-TAKPEYARKLRHRVRLILDWC 173 Query: 186 QNTGLIDAVPS-VNIGKAFE--KPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 Q G + + IG A K++ S+ ++ Q + + + S+S + + Sbjct: 174 QAHGYVHTNIAGEQIGGALPSMPSVKEHHRSLPYAEVSQALDLIEASGASLSAKLCLRFL 233 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT RP EA A W+EI++ W IPA +MK +H VPLS A+ +LE + G Sbjct: 234 ILTAVRPGEARNATWEEINWETKTWTIPAGKMKAKAEHRVPLSREAMQVLERASRVRGES 293 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAAL 361 IFPS +K +P++ T+ L+ GL V HG RS T E P VIE L Sbjct: 294 PLIFPSSLKRAKPLSDMTLTKLLRDVGLREKTVPHGFRSSFRTWAGEQTNSPTPVIELCL 353 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 AH N + +AY RSD L++R+ +MQ W V ++V H Sbjct: 354 AHSVGNAIEKAYTRSDLLQKRQRLMQEWGRYVTGEGRANVVPLH 397 >UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcus RepID=A3ZAX6_9SYNE Length = 426 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 126/409 (30%), Positives = 190/409 (46%), Gaps = 14/409 (3%) Query: 8 LTDTEIKAAKPKDAD--YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 L+D I+A +P + +D DGL L + SGSK W+ Y R + G YPA Sbjct: 2 LSDKAIQALRPDPDRPGTKHHDRDGLYLWVARSGSKTWRKDYRW--QGARRTFTIGPYPA 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V L+DARK E + IDP+ Q RN E+ + F+ +A+ W+ S + Sbjct: 60 VRLADARKQALELNTWIKAGIDPRTQVPTQQRNQAESSSRPFVQIAQAWFEHHSASWSPR 119 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLV-KAVQPVQARGALETVRRLCQRINEVMIY 184 Y D+ L + PA+G + I I + + + P+ ARGA E RR V+ + Sbjct: 120 YCRDMREKLNHFVIPALGQLDIEAISRSDIETQLLAPILARGANEQARRCNDVTRRVIEH 179 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTAS----ISMSTRCLFM 240 A + L P+V K + + I +LP+L+ + S+ Sbjct: 180 AVDLELRQDNPAVKARKVIAATRVTHYHRISWVELPELLEVIDRFERQRLAERSSLIALR 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +LT+ RP+E EARW E+D +W IPA RMK H VPLS A + +M +P++G Sbjct: 240 LMMLTLVRPSELREARWSEVDTEGRQWIIPAERMKTRVRHIVPLSSQARHLFDMQRPITG 299 Query: 301 GREFIFPSRIKPN----QPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 + +F + + M++ ++ L+R G G HG R T E P Sbjct: 300 HTDLVFHTPNHRGSGELRVMSNGCLSMLLRRMGFQGRQTPHGFRGFGQTNCIEQLKIPRV 359 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 V E LAH D N V RAY+ ++YLE+R M+Q WADL+ + + Sbjct: 360 VTEKQLAHADGNSVSRAYDWAEYLEERSDMLQRWADLLDQVAVAAGLAP 408 >UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WP11_VEREI Length = 387 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 195/398 (48%), Gaps = 21/398 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT ++AAKP+ Y+L D GL L + +G K W+ Y R ++ +++G +P VS Sbjct: 3 LTVRAVEAAKPRHKGYKLADSVGLYLFVTPAGGKSWRANYLRE--GKQATRTYGRWPDVS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE-DY 126 L ++ + P +F +A W +K +++ + Sbjct: 61 L----AEARKAHAAARDGVVPATV-----------AVPSFETIARAWLKLKLPTLSNGKH 105 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + +LER +FP IG I I LV VQ VQ G +ET R+ RI V YAQ Sbjct: 106 QSQVANTLERFVFPKIGKRPIDTIHRPELVDVVQAVQLDGRVETAHRVAGRIAAVFDYAQ 165 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKN-MPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + GLI++ P+ ++ + + K M SI P + LM + T T Sbjct: 166 DAGLIESHPASHLVRVLHSRKVKKPMASIAPAEAGALMRAITDYD-EPVTGLGLQLLAHT 224 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R E RW E + + W IPA RMK+ H VPLS A AI+ ++ L+ REF+ Sbjct: 225 FVRVGELRAMRWSEFKEDGAVWVIPAERMKLRLPHVVPLSLQAQAIVGQLRLLNAEREFV 284 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALAHV 364 S ++P P++ T AL R G G + +HG R++AST LNE GF DVIE LAH Sbjct: 285 MDSPLRPGHPLSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHK 344 Query: 365 DKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 + + VR AYNR+ YL QRR +MQWWA + AA + S Sbjct: 345 ETDAVRAAYNRAQYLPQRRELMQWWAQWLAAAQTSSDP 382 >UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0I233_HAES1 Length = 434 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 140/411 (34%), Positives = 213/411 (51%), Gaps = 19/411 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR KPL++TEI+ AK K Y L DG+GL L ++ SGSK+W+F YY+P TK+RT+ S Sbjct: 20 MARLIKPLSNTEIEKAKIKKKAYPLRDGNGLFLSVEISGSKIWRFNYYKPYTKKRTEISI 79 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL ARK+R E LLA++IDP+ H+ + +N+Q + NTF V +W+ Sbjct: 80 GKYPEISLLQARKIRDEYLALLAQNIDPKTHRDQ-KQNTQALERNTFKYVCAKWYAEIYP 138 Query: 121 SVTE--DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + D W+ LER IFP + +I ++EI L+ + + GA T+ +L + + Sbjct: 139 TKAPNEDTRARNWQRLERHIFPKLAEIPLSEITPRLLIDVYREI---GASNTLDKLHRLV 195 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA----SISMS 234 + Y G+I+ F P KN P+I P +LP+L+ + TA + + Sbjct: 196 KATLDYGIKLGIIEGHNCNLAKDDFIAPLAKNHPAITPAELPELLKAINTAFKEGKLEFN 255 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-------DHTVPLSDG 287 T F LLT R E W ID IP+ MK R DH +PLS Sbjct: 256 TLFAFNLTLLTGLRQKELTRIEWAFIDDGNKLLIIPSENMKQTRKLREQPKDHIIPLSSQ 315 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTAL 347 + ++ ++ +G ++FP N+ + TV+ AL+ G +HGLR + + L Sbjct: 316 MIKLIGTIRQFNGSSPYLFPRVRNRNKTIGLDTVSNALRDNGYRDKQDAHGLRVVFRSYL 375 Query: 348 NEEGFPPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 ++ GF V E A+AH K +++ Y+R DYLE+R+ Q W D + Sbjct: 376 SQIGFSVVVGELAIAHNSTGKGKIQAIYDRYDYLEERKQAYQAWGDYCEKC 426 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 354 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 111/407 (27%), Positives = 178/407 (43%), Gaps = 23/407 (5%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K TDT I+ K K+ Y+ ++G G + I + K W +RY + TK + G YPA Sbjct: 2 KNFTDTYIRNLKAKEKRYEEFEGGGFGIRITPNNVKTWIYRYK--INGVTTKFTLGHYPA 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SLS+A++ E + + +DP K ++ +E NT +A W+ E Sbjct: 60 MSLSNAKRRFLELSQMRREGVDP----KTVIQAQEEQDNNTVDKLALNWYTNYI----EK 111 Query: 126 YADD---IWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + I R ++ DI P +G + +++ + A+ + RGA R I ++ Sbjct: 112 HVKRPLVIKRQIDNDIIPLLGKKKLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMF 171 Query: 183 IYAQNTGLIDAVPSVNIG-KAFEKPQKKNMPSIRPDQLPQLMHTMRT--ASISMSTRCLF 239 YA + G P+ NI + +K + +++ L + + +S TR Sbjct: 172 NYAVSRGYTQFNPASNIRSRDIGGIEKPKERVLTLEEIKALWLFLDSDLTQMSTQTRIAI 231 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 LLT R E A W EIDF AS W IPA K + H V LS A ++ +KPLS Sbjct: 232 KLLLLTGVRTVELRLASWHEIDFEASLWTIPALHSKASIIHKVHLSKLAKSLFLQLKPLS 291 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTALNE-EGFPPD 355 +++ P+ + A+KR +H LR +T L E P Sbjct: 292 -HSDYVLTGV-DGFHPITENALPRAIKRIQEKLGIPDWTAHDLRRTFATQLGETLQIDPV 349 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 VIE L H + YNR++ L QRR ++ WA ++ ++V Sbjct: 350 VIEKCLGHKMP-RIMATYNRNEMLPQRREALERWAVCIENMMQDNVV 395 >UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EVM1_ECOLX Length = 396 Score = 353 bits (907), Expect = 7e-96, Method: Composition-based stats. Identities = 116/402 (28%), Positives = 187/402 (46%), Gaps = 17/402 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA-- 65 LTDT ++ KPK+ Y++ D DGL + + +G+ +++ Y + ++ +FG Y Sbjct: 2 LTDTRLRHLKPKEKLYKVNDRDGLYVAVTPAGTISFRYNY--SINGRQETVTFGRYGVGG 59 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 ++L++AR+ E+K ++A P + ++A+ TF AE+W + E Sbjct: 60 ITLAEARERLNEAKKMVASGRSPAREKARDKARIKDAE--TFGAWAEKWLRGYQM--AES 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 D +R++ +TEI L + RGA T + + +V +A Sbjct: 116 TRDMRRSVYQRELKSKFAQQKLTEITHEDLRALTDNIVERGAPATAVHAREIVLQVYRWA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 G PS + A + ++ P ++ + M + S R LLT Sbjct: 176 IERGQKVENPSDLVRPASIAKFEPRDRALTPVEIGLMYRYMERVGTTPSIRAAVKLLLLT 235 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 + R +E A W EI+F+ + W IP RMK H V LS A+ I+ +K +G +FI Sbjct: 236 MVRKSELTNATWKEINFSEALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFAGSSDFI 295 Query: 306 FPSRIKPNQPMNSQTVNAAL--------KRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 PSR + PM+S T+N L K L H LR AST L+E G+ D I Sbjct: 296 LPSRYDSDAPMSSATLNRVLTLTYRLAQKEGDLLPKFGPHDLRRTASTLLHEAGYNTDWI 355 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 E LAH ++ VR YN+++Y EQR M+Q WA+++ S Sbjct: 356 EKCLAH-EQKGVRAVYNKAEYREQRAEMLQDWANMIDEWTSK 396 >UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobacteria RepID=A9VZC1_METEP Length = 412 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 118/402 (29%), Positives = 188/402 (46%), Gaps = 19/402 (4%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K LT +++A K + DG+GL L+++ SGSK W R + +R G Sbjct: 20 KALTTVQVRALKV---PGRYADGNGLYLVVEPSGSKRWLLR--TIVQGRRRDIGLGGAGL 74 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT-E 124 V+L++AR+ + L DP +++ TF AE+ K S Sbjct: 75 VTLAEAREKALAYRKLARDGGDPLAERRKARATV-----PTFAEAAEQVHEEHKASWKNP 129 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A +L P +G + +I+ +++A+ P+ ET RR+ QRI V+ + Sbjct: 130 KHAAQWITTLRTYANPHLGARRVDQIETPDVLRALSPIWLT-KGETARRVRQRIGTVLDW 188 Query: 185 AQNTGLID-AVPSVNIGKAFEKP--QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 A+ G P ++ K K + ++ ++ ++P + ++++ + R F + Sbjct: 189 AKAAGHRTGDNPVESVAKGLPKQGERDEHHAALPYAEVPAFVTRLQSSDHGEAARLAFEF 248 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +LT R +E A W EID + W +PAARMK R+H VPLS +L I+ K L+G Sbjct: 249 LILTAARTSEVLRAEWREIDEAEALWTVPAARMKAGREHRVPLSKRSLEIVRRAKLLAGD 308 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAA 360 FIFP R +PM++ AL+R L + +HG RS E P +V E A Sbjct: 309 SAFIFPGR-STGKPMSNMVFLMALRRMKLT--VTAHGFRSSFRDWAAEATSLPREVAEMA 365 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 LAH +N V AY R D L +RR MM+ W+ V + G Sbjct: 366 LAHTIENRVEAAYRRGDLLAKRREMMEQWSTFVASKPKGDKP 407 >UniRef50_A7H3V7 Putative site-specific recombinase, phage integrase family n=2 Tax=Campylobacter jejuni RepID=A7H3V7_CAMJD Length = 399 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 109/401 (27%), Positives = 187/401 (46%), Gaps = 19/401 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L DT+IKA K KD Y + D D L L I SG K + F Y P T + + + G YP ++ Sbjct: 2 LNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTLN 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++ARK R KV LA++ + +E TF +A +KK ++E Sbjct: 62 LANARKQRDNLKVNLAEN-----------DSIREKSEITFKELALEKMELKKLELSEKTY 110 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 L+R F G+I + +++ ++K+ + + E + +NE+ + Sbjct: 111 KSYVSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTLLNEIFRHGVI 170 Query: 188 TGLIDAVPSVNI--GKAFEKPQKKNMPSI-RPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 I + P N+ + KN ++ ++ L+ + +S + M+ LL Sbjct: 171 KEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLL 230 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T R A+W++ID W IP MKM R HT+PL+ + +L+ K +S + Sbjct: 231 TAQRSFSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGY 290 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGL-GGVLVSHGLRSIASTALNE----EGFPPDVIEA 359 +F S ++ ++ T+ + +R G HG R++ ST +E D+IE Sbjct: 291 LFYSLRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMSSDIIEL 350 Query: 360 ALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 LAHV+KN+++ AYN + L+++ +MQWW D + + Sbjct: 351 CLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAELN 391 >UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepID=Q1QLT5_NITHX Length = 416 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 139/397 (35%), Positives = 211/397 (53%), Gaps = 14/397 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT I+ AKP D +++ D GL L + ++G KLW+FRY + + G YP +S Sbjct: 7 LTDTAIRKAKPGDKPFKMADSGGLHLYVSTAGGKLWRFRYRYAD--KEKLLTIGPYPDIS 64 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L DAR R +K L DP +K + + + NTF +A W+++ K E +A Sbjct: 65 LVDARAARDAAKASLRDGRDPGVIKKLRKLANVTSTANTFEAIAREWYDLNKGQWVERHA 124 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 DD+ SLER++FP +G+I + +IKA ++ ++ ++AR A ET RR+ QR++ V +YA + Sbjct: 125 DDVLTSLEREVFPVLGNIPVADIKAPEVLAVLRGIEAR-AKETARRVRQRMSAVFVYAIS 183 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRP-DQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 +G DA P+ + KA K P+I D +++ +T+ LT+ Sbjct: 184 SGRADADPAATVQKAMAPMVKGRQPAITDLDAAREMLGKAEAEKAHPATKLALRIIALTV 243 Query: 247 TRPAEAAEARWDEI-DFNASEWKIPAARMKMN--------RDHTVPLSDGALAILEMMKP 297 RP W E D W+IPAARMK+ RDH VPLS AL +E ++ Sbjct: 244 VRPGTLITTPWSEWTDMEDGVWRIPAARMKLRLQHKDDDARDHWVPLSRQALEAVEALRT 303 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE-GFPPDV 356 L+G FP+ ++ M+ + L RAG V HG R+ S+ +NE + Sbjct: 304 LTGRGPIPFPNTRHAHRTMSENAIGYLLNRAGYHHRHVPHGWRATFSSVMNERFPADKPI 363 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 I+ LAHV K++V AYNR+ +LE+RR + Q WADL+ Sbjct: 364 IDLMLAHVPKDKVEGAYNRALHLERRRKLAQEWADLI 400 >UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJJ0_ACIJU Length = 406 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 121/405 (29%), Positives = 207/405 (51%), Gaps = 19/405 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+DT+IK KP++ Y++ D + L + ++ +G K+W+ +Y + S G YP+VS Sbjct: 2 LSDTKIKNLKPQEKMYRILDAERLYIEVRPTGKKVWRLKYTLHS--KEGTISLGEYPSVS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++ARK + E KVLL I+P + +++ + + A +NTF +AE + ++DY Sbjct: 60 LAEARKKKEEIKVLLKDGINPVQEKRKLHQENLIANSNTFKAIAEEYIVEGMKYKSKDYI 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQAR--------GALETVRRLCQRIN 179 D RS+E+DI+ AIG I E+ + ++ ++ R + I+ Sbjct: 120 DQFKRSMEKDIYKAIGHKPIREVTSADILSILKNTITRVRKLSHYGTGEAAANQNRLFIS 179 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 VM YA T + P+ + A E P+ ++ + D+ +L + + + R Sbjct: 180 LVMKYAIVTLRAENDPTYAVKNAIESPETEHARPLDKDERIRLRTRLELYGGTTTVRNAC 239 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAA--RMKMNRD------HTVPLSDGALAI 291 + + T+ R +E +W +DF + P A R K R H VP+SD A+ Sbjct: 240 LAMMYTMLRASEIRRMQWSYVDFEERLIEFPKASRRRKQERSNKKNHIHLVPMSDQLFAL 299 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG 351 L+ +S + ++F + K ++ + T+N AL G+ + +H R+ AST LNE+G Sbjct: 300 LKEQFEISQYQTYVFSAPFKNDEMLARTTLNRALVFIGM-PEVTTHDFRATASTLLNEKG 358 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 + PD I LAHV++N+ R YN + YLE RR M+Q WAD+V + Sbjct: 359 YKPDWINKQLAHVEENKTRATYNHAKYLESRRKMLQDWADIVDSW 403 >UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X2_ACICJ Length = 410 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 121/421 (28%), Positives = 187/421 (44%), Gaps = 23/421 (5%) Query: 1 MARKTKP-LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + L I A + + L+DG GL L +++ GSK W FRY ++ S Sbjct: 1 MPKTVSKRLNALAITNA---NREGNLHDGGGLYLRVRADGSKSWAFRYTMA--GRKHWMS 55 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G VSLS+AR+ + + L+ DP ++E+ + E TF VA + + Sbjct: 56 LGPLRDVSLSEAREQARQLRNLVRDGFDPLAQRRERQHLAAEQTARTFDAVAAAYVEAHR 115 Query: 120 TSVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + +A +L P IG ++EI + + + P+ A ET RL R+ Sbjct: 116 AEWSNPKHAQQWENTLATYASPIIGKRPVSEISLLDVRRVLDPIWAE-KPETASRLRGRV 174 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTAS 230 V+ YA G ++ K+ ++ +P M +R Sbjct: 175 EAVLAYATVHGWRSGDNPARWPGFLDQIYAPKAKVRAVKHHAALDYHDMPAFMAELRERE 234 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + + +LT TR EA ARWDEIDF+A+ W IPA RMKM ++H VPL+ A+ Sbjct: 235 A--VSARCLEFAILTATRSGEARGARWDEIDFDAAVWVIPAPRMKMKKEHRVPLAPRAVE 292 Query: 291 ILEMMKPLSGGRE-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L M S R+ IFP P +PM + A+ A L +HG+RS E Sbjct: 293 LLREMAGRSPRRDGLIFPG-GAPGKPMTDVALAKAV--AVLRPGFTAHGMRSSFRDWAAE 349 Query: 350 EG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 FP ++ E ALAH++K+ AY R D L +RR +M+ WA+ S + + + Sbjct: 350 MTSFPREIAEVALAHINKDRTEAAYQRGDLLAKRRQLMEAWANYCAGLVEESEKVVAMRR 409 Query: 409 I 409 Sbjct: 410 A 410 >UniRef50_A6Q4N1 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4N1_NITSB Length = 412 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 107/414 (25%), Positives = 194/414 (46%), Gaps = 22/414 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + +PL D +++ AKPK+ +Y+L DG+GL +LIK +G K+++ Y +R + Sbjct: 1 MPKSIRPLNDLQLRNAKPKEKNYKLRDGEGLYILIKPNGRKIFRLDYVYA--GKRNTYTI 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTF-LLVAERWWNVKK 119 G YP +SL+ ARK++ E K L+ IDP +++EQ R + F V ER+ K Sbjct: 59 GDYPQISLAQARKIKYEVKELIKNGIDPNRYKQEQKRIKELEANKKFTSFVIERFIQHKA 118 Query: 120 TSVTEDYA-DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPV---------QARGALE 169 V++ + + I P IG++ I E+ ++K V+ ++ G Sbjct: 119 KEVSKARLQKNYINTFANYITPFIGEVKIDEVTKQDIIKIVKNTYSTKLQKDNRSTGKTY 178 Query: 170 TVRRLCQRINEVMIYAQNTGLIDAVPS--VNIGKAFEKPQKKNMPSIRPDQLPQLMHTMR 227 R + + + + +A + P+ ++I K + ++ +++ ++ + Sbjct: 179 KAREVYRLLKSLFDFAIHNDYTQTNPAVGIDIDSLIPKHKPTRHKAVTNERIKEIYQKIC 238 Query: 228 TASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN-RDHTVPLSD 286 + + R + LT R A +WD DF+ PA MK + +PL+D Sbjct: 239 SLQ-NPYFRLPLQYIALTAVRFGNVANLKWDYKDFDKRVIIYPAEAMKTKNQPFRIPLTD 297 Query: 287 GALAILEMMKPL-SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST 345 + +++ K + S E +F S I ++P++ T+ LK HG RS T Sbjct: 298 AIVKVIQQAKAIASPYSEIVFGSPINAHKPISDNTLRKVLKIDLNEPEQDLHGFRSSFET 357 Query: 346 AL----NEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 E G + IEA L H ++V ++Y RSD+LE R+ ++ WWA+ + + Sbjct: 358 IALEHQKEHGCSFEAIEAQLHHNIGSKVTQSYLRSDFLEDRKELLNWWANYLNS 411 >UniRef50_C8PFJ4 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PFJ4_9PROT Length = 383 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 192/405 (47%), Gaps = 31/405 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + + PLT T++K KPKD Y + DG L + I SG+K + + Y + + + + Sbjct: 1 MPKLSVPLTATQLKNLKPKDKPYFVGDGSNLLIKIMPSGAKFFIYEYKQGA--KYKRVTI 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +SL++AR+ ++E K + + + TF V E W K+ Sbjct: 59 GRAGEMSLAEARQRKSELKTRV-----------------KTSDKITFREVFEEWIKT-KS 100 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 ++ I R E + PA+G + I +I ++ A+ P+ + ET +++ +N Sbjct: 101 KISPKQLFWINRRFESLLLPALGSMQIADIGRKDIIGALSPLLSDEKQETAKKVLGALNG 160 Query: 181 VMIYAQNTGLIDAVPSVNIGKA--FEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRC 237 +A +D +I KA + Q ++ + + ++ L+ ++ + + Sbjct: 161 FYKFALLHEYVDHNIIADIDKATLIGRRQIRHFAYFKDEAEIRNLIKAVKGYFGNERIKV 220 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 ++ L T R A A WDEI + WKIPA++MK +DH V LS +L + Sbjct: 221 CALFMLYTAVRGENARFATWDEIKGD--MWKIPASKMKNGKDHEVFLSSSVRRMLSDYRA 278 Query: 298 LSG-GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVL-VSHGLRSIASTALN----EEG 351 S EFIFPS +P++ TV + L+ G + HG R+ ST + E G Sbjct: 279 SSPLQSEFIFPSIKSNVRPISDNTVRSMLRNLGFSNEMITPHGFRATFSTICHEKQDEHG 338 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 DVIE LAHV+KN+V+ AYN + L+QR +MQWW+D + Sbjct: 339 QNSDVIELCLAHVEKNKVKDAYNHAKNLKQRAALMQWWSDFLDGL 383 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 101/400 (25%), Positives = 173/400 (43%), Gaps = 22/400 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D +++ +P+++ ++L DG GL LL+ SG + W RY + + + G YP +S Sbjct: 3 LSDAQLRKIRPRESRFELTDGKGLVLLVLPSGRRSWLLRYQ--FEGKPRRITLGEYPDMS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR ++ ++ + +DP + E+ + + T + +W+++ Sbjct: 61 LLQARNASEATRSIIKQGLDPALKRTEEKTAHKTS--PTVSDLLTEYWDMELKE--SPSG 116 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R +E+D+ P G + EI + V+AR A T RL + + +A Sbjct: 117 KERRRLVEKDVLPPWGKRKVAEITRRDAALLLDTVRAR-APVTGNRLQGVLVRMFNFAAE 175 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMR----TASISMSTRCLFMWQL 243 G+++ P + + K E+P + ++ L + I ++ L Sbjct: 176 RGVLEHSPLMGLRKKKEQP---RSRVLADKEIKLLWDALALDNTAMDIYRVSKLALKMIL 232 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG-GR 302 LT RP E WDEID + W IPA RMK H VPL AL I+E + S G Sbjct: 233 LTGQRPGEVCGMTWDEIDGD--TWNIPAERMKSKEPHNVPLGSMALEIIEQARRYSPRGS 290 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKR----AGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 F+F S P+ +++ A+ R G+ H LR T L E G V E Sbjct: 291 TFVFKSSHFKEGPITPHSLSKAILRHWQEMGVTERFTPHDLRRTLRTRLAEIGVDDVVGE 350 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 L H + + YNR Y +++R + W ++ + Sbjct: 351 RVLGHKLQ-GIMAVYNRHSYDKEKRQALALWERKLREIVA 389 >UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3P2_BURTA Length = 409 Score = 343 bits (881), Expect = 6e-93, Method: Composition-based stats. Identities = 113/407 (27%), Positives = 182/407 (44%), Gaps = 21/407 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M L D + ++AKP++ Y+L DG GL LL+K +G K WQFRY +P + Sbjct: 1 MPESL--LRDLQCRSAKPRERVYRLSDGGGLALLVKPNGLKYWQFRYMKP-DGREGLIQI 57 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ--EAKTNTFLLVAERWWNVK 118 G YP ++L AR R E +V + DP +K++ + A+ F A + + Sbjct: 58 GPYPRITLEAARAARNEHRVAVQGGDDPATLRKQEKARRKIDAARALNFKQCATAFIEAR 117 Query: 119 KTSV-TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + +L +P IG + +I + K ++P+ ET R+ R Sbjct: 118 SAEWVNPKHTQQWTNTLSTYAYPIIGALRPADIDTDLVRKVLEPIWLT-KNETASRVRGR 176 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTA 229 I V+ +A+ GL D ++ + K+ ++ ++ + +R Sbjct: 177 IESVLDWAKVRGLRDGENPARWSGHLDQLLAAPGKVQKPKHHAALPFTEIGAFVAELRGM 236 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + + +LT R E AR DE D +A W +PA RMK R H VPLS AL Sbjct: 237 VG--TAARALEFTILTAMRTGEVIGARHDEFDADAQLWTVPAERMKAKRAHRVPLSSSAL 294 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L+ + P S +F +P+++ + L+R G L HG RS E Sbjct: 295 ELLKTL-PTSADSPVVFEGMR-ARRPLSNMAMLQVLERMK-RGALTVHGFRSTFRDWAAE 351 Query: 350 EG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 F +V+E ALAH +++ AY R D ++RR +MQ WAD ++ Sbjct: 352 CTPFSNEVVEMALAHAIRDKTEAAYRRGDLFDKRRTLMQAWADHIEN 398 >UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JWM6_PASHA Length = 404 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 140/406 (34%), Positives = 218/406 (53%), Gaps = 11/406 (2%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS- 59 M KPL+DT +K K + D +GL +L + +K+W + Y P T +R+ ++ Sbjct: 1 MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKK-AKVWIYSYISPKTGKRSTKNR 59 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW--WNV 117 G+YP +SL++AR R E L+ + +DP EH + R ++E + + A +W W + Sbjct: 60 IGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEKQE-SIQSFAYKWADWKL 118 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K + + LE +FP ++ + + + + R +T+ R+ Sbjct: 119 SKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRLTDL-DRIMPDTLHRIAGN 177 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 + E++ YA G I+ P I KAF + P+I P++L + M ++ ++ + + Sbjct: 178 LIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEELAEFMQDLQKSNRTPQIKL 237 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-DHTVPLSDGALAILEMMK 296 L WQLL I RP EA +W +ID+ IPA RMK + H+VPL+ A+AILE MK Sbjct: 238 LVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKGGKNPHSVPLTKQAIAILEEMK 297 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAG---LGGVLVSHGLRSIASTALNEE-GF 352 +G + IF R N+P NSQTVN A+KR G+LV+HGLRSIAST L+E Sbjct: 298 KYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKYKGLLVAHGLRSIASTYLHERFTT 357 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 VIEA L+H +K+ V AY+R ++L++RR +MQ WAD V+ S Sbjct: 358 ETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQEWADFVEQCKS 403 >UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=B5JZM6_9RHOB Length = 411 Score = 343 bits (880), Expect = 8e-93, Method: Composition-based stats. Identities = 114/401 (28%), Positives = 190/401 (47%), Gaps = 20/401 (4%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 K L+ ++ A DG GL L + +SG+K W R + +RT+ G+ Sbjct: 23 KALSAAFVRTATTPGK---YNDGHGLFLKVVTSGAKRWVQRI--VVRGKRTEIGLGSASL 77 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT-E 124 VSL++AR+ E++ L DP + ++ TF + + + + + + Sbjct: 78 VSLAEARETALENRKLARAGGDPLQAKRTSEA------LLTFEEASRKVHKIHEPTWRNK 131 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A +LE FP + ++ ++E+ ++ +QP+ ET +R+ QRI VM + Sbjct: 132 KHAAQFLSTLETYTFPRMSNLKVSEVTTADVLAVLQPIWLE-KPETAKRVRQRIGTVMKW 190 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQ--KKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 A G P+ I +A K + K+ S+ D++ + +R++ +T+ Sbjct: 191 AVANGWRQDNPAGAISQALPKQKQPVKHRKSLPYDEVSGCLVAVRSSRAFNATKLALELT 250 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT R E A W EID +EW IPA RMK +++H +PLS A+ +LE K L G Sbjct: 251 VLTACRSGEVRLAEWSEIDLAKAEWTIPAQRMKASKEHRIPLSGRAVEVLEAAKALDDGT 310 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAAL 361 +FPS P++ T++ +K G + HG R+ T E +V EAAL Sbjct: 311 GLVFPSTTGN--PLSDMTLSKLVKGLGY--DVDVHGFRTSFKTWCQERTTTAREVSEAAL 366 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 AH +N+ AY RSD E+RR +M+ W+ V S +V Sbjct: 367 AHSIQNKAEAAYARSDLFEKRRKLMEQWSCFVAEPSSAVLV 407 >UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM9_9DELT Length = 409 Score = 342 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 168/412 (40%), Gaps = 21/412 (5%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 ++ +I+ +P+ Y L + +G ++ I SG+K W F Y +R + + G YPA Sbjct: 1 MKFSEAKIRNLRPQSKKYYLREANGFSVRIMPSGAKTWLFIYT--FDGKRKEMNLGHYPA 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V+L AR+ + L + DP E+ + T + + + N Sbjct: 59 VTLEAARRKYRAAFDLFEQGNDPVAMHLEKKEERRR--TPFLSDLVDEYINKHAMRFKRS 116 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 +A D L RD+ PA G +I ++ ++ + RG+ Q I ++ +A Sbjct: 117 WAKDQ-AILNRDVVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 + +++ P + P+ + +++ L + A IS + L+T Sbjct: 176 VDREILEISPCTGVK--MPAPKMARDRVLSEEEIRVLWSGLERAKISHEVQRAIKLILVT 233 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 RP E + EI W IPA R K + H V L+D AL ++ F+ Sbjct: 234 AQRPGEVMGMDFSEI--EGRWWTIPADRAKNGKAHRVYLTDTALELIGE-----NTGGFV 286 Query: 306 FPSRIKPN--QPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTALNEEGFPPDVIEAA 360 FPS +P+ S + A +R H LR A+T + E G +VI+A Sbjct: 287 FPSPRHRENPRPIGSNAMTVAHRRNKDKIPLEDFTPHDLRRTAATFMAEMGTMDEVIDAI 346 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD-SGSIVLTHLSKIRL 411 L H K V R YN+ Y +++ ++ W ++ + + ++R Sbjct: 347 LNH-SKMGVIRVYNQYRYDTEKQATLEAWERRLQRILGAEKKEQGDIIRLRA 397 >UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N3S0_9GAMM Length = 397 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 118/392 (30%), Positives = 195/392 (49%), Gaps = 15/392 (3%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGS---KLWQFRYYRPLTKQRTKQSFGAYP 64 L+D+ I++ K D + D DGL L ++ S K++ FR+ K+ + G Y Sbjct: 2 LSDSLIRSLKLGDKK-RHTDRDGLVLELRPSKKQLKKIFIFRFQW--DKKPQTITIGDYR 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +V L AR + + ++ IDP + + TF +VA++W+ K + + Sbjct: 59 SVGLGAARDIALAYRNMVNSGIDP-----RSKNVEADQEKITFEVVADQWFQKYKGTWKD 113 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + +SL RDI P IGD I +I L+ ++P + G + RL R+ + + Sbjct: 114 FARNRHSKSLSRDIIPLIGDKPIDDITKADLLFIIKPHEDLGHHDVAHRLYARLQSIFEF 173 Query: 185 AQNTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 A + L + P + + KA KP+ N P+I + ++M ++ + + + Sbjct: 174 AVGSSLTENFPFIGLKKALIPKPRVINQPAISSNNAHEMMRVIKQTNSTKIVKVYMELLA 233 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 TRP E EA+W E D SEW IPA RMKM H VPL+ L +L+ ++ ++G Sbjct: 234 HLFTRPTELREAKWSEFDLQKSEWNIPAERMKMGIPHWVPLTPHVLNLLKELRLITGFTP 293 Query: 304 FIFPSRI-KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAAL 361 ++F S K +P++ +V L AG +HG RS+AS+ L+E+G F D IEA L Sbjct: 294 YLFSSPALKKAKPISEASVRKLLHNAGFKNRHTAHGFRSLASSVLHEQGNFRSDAIEAQL 353 Query: 362 AHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 AH + VR Y R+D+ +RR +M W++ + Sbjct: 354 AHKVQ-GVRGVYLRADFKAERRELMHWYSSWL 384 >UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9F3_9SPHN Length = 443 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 122/421 (28%), Positives = 209/421 (49%), Gaps = 36/421 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT EIK AKP+ +DY+L D GL L + S+G K W++RY + + + G YP + Sbjct: 3 LTIVEIKNAKPQASDYRLADSQGLFLHVTSAGGKFWRYRYR--IGPKEKTLTLGRYPEMG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR+ E++ L+++ DP +++ EA TF +AE W ++ + A Sbjct: 61 LVAAREAHHEARKLVSEGKDPALEKQKAKIARIEAAKITFRKLAEEWLADQEPIWSVSNA 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + ERD++P G++ I +I++ +++A++ ++ARG++ET +R+ I V A+ Sbjct: 121 KRVRHRFERDLYPLFGNLPICQIESAPILRALRKIEARGSIETAKRVRGYIKSVFRRAKG 180 Query: 188 TGLIDAVPSV---NIGKAFEKPQKK-NMPSIRPD-QLPQLMHTMRTASISMSTRCLFMWQ 242 GL+D + I A + ++ P++ + + + ++ S++ + Sbjct: 181 EGLVDHAILLEIDEIKDALKPARRGSKQPALTEVPETLEFQKAVDRSTSSLTVKLASRLL 240 Query: 243 LLTITRPAEAAEARWDE---IDFNA-------SEWKIPAARMKMNRD--------HTVPL 284 LT+ R A W E ID++ W+IPA+RMK++ + H VPL Sbjct: 241 ALTLVRVGVLRTALWSEFEGIDWDNPDAIPNAPIWRIPASRMKLDVEDKGNPAFGHDVPL 300 Query: 285 SDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAG---LGGVLVSHGLRS 341 A+ +L ++PL+GG +FP+ +PM+ ++ KR G V+V HG RS Sbjct: 301 PHQAVEVLRALRPLTGGFALLFPNSKSWREPMSDAALSTMYKRMGGGRYKNVMVPHGWRS 360 Query: 342 IASTALNEEGFPPD------VIEAALAHVDKNEVRR--AYNRSDYLEQRRPMMQWWADLV 393 ST +NE + VI+ LAHV +YNRS Y + R ++Q WADL+ Sbjct: 361 SFSTIMNERAAELERDGDRMVIDLVLAHVPPGVSASEWSYNRSRYRKPRGTLIQIWADLI 420 Query: 394 K 394 Sbjct: 421 T 421 >UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8EC Length = 399 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 134/405 (33%), Positives = 204/405 (50%), Gaps = 16/405 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSS-GSKLWQFRYYRPLTK-QRTKQ 58 MA + LTD I++ K + + L + + GS W +++ P K QR K Sbjct: 1 MA--SVKLTDKIIRSLKSEQIKGDF--VENLYIKANKAAGSFSWLYKFTNPHNKAQRQKI 56 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 G YP + ARK+ E L+ + I P EH + Q + +E + TF + + + Sbjct: 57 ILGRYPRTPIDFARKIAMEYNALVKQGIHPTEH-QAQQKQQKEIEAMTFKEMTSLYREFR 115 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 SV DD +E IFP GD+ + +I + ++P++A G T+ ++C Sbjct: 116 ADSVKN--VDDAISRVEMYIFPKFGDLPLNKISLAEWHRTLKPMEA-GKNNTLLKICSTS 172 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 +++ YAQ G ID P + +F K + K+ P+I P +L + + + + + ST+ Sbjct: 173 KQILDYAQTCGYIDFNPLTTLRASFRKKKAKHNPTIEPKRLAEFIRDLFLSDVERSTKLS 232 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 +QLLT TRP E A+A+W EIDF WK+PA +MK + H + L+ ALA+LE ++ Sbjct: 233 IEFQLLTATRPNETAKAKWAEIDFKNRLWKLPADKMKTGKPHIITLNSQALALLENIRRF 292 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRA---GLGGVLVSHGLRSIASTALNEEG---F 352 +G RE+IF S ++QT N A+K VL SHGLRS+ ST LN Sbjct: 293 TGDREYIFSSSRSKTGHQSTQTANNAIKSIQGGKYHSVLTSHGLRSVFSTYLNGLHDPMI 352 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 I+A LAHV N R YN S + EQ+R +MQ W D V+ Sbjct: 353 HNVHIDACLAHVVGNGTSRTYNHSAHEEQKRYIMQKWGDYVEQCK 397 >UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family n=4 Tax=Rhodobacterales RepID=Q5LS43_SILPO Length = 406 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 187/397 (47%), Gaps = 19/397 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 R K L+ ++ + DG GL L + +G+K W R + +RT+ G+ Sbjct: 16 RAEKALSAAFVRTVT---KPGKYTDGHGLFLKVDDTGAKRWVQRI--VIRGKRTEIGMGS 70 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 VSL++A + +++ L DP + ++ TF A + + + + Sbjct: 71 ASLVSLAEASETALQNRKLARAGGDPLQAKRTAQA------LLTFEEAARKVHKIHEPTW 124 Query: 123 T-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 + +A +LE FP IG + ++E+ ++ +QP+ ET RR+ QRI V Sbjct: 125 RNKKHAAQFISTLETYTFPRIGKLKVSEVATADVLAVLQPIWLE-KPETARRVRQRIGTV 183 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKP--QKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 M +A G P+ I +A K +++ ++ D++P+ + T++ + T+ Sbjct: 184 MKWAIANGWRTDNPAEAISQALPKQIDTQQHRKALPYDKVPEFLETLKASDAGDFTKLAL 243 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT +R +E +A W E D W PA RMK ++H VPLS AL IL + L Sbjct: 244 ELVVLTASRSSEVRKAEWSEFDLEQGIWTRPAERMKSKKEHRVPLSPRALEILIEARELC 303 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIE 358 G +FP K +P++ T+ K G + HG R+ T E P DV E Sbjct: 304 TGEGLVFPG-TKIGKPLSDMTLLKLTKALGY--DVDVHGFRTSFKTWAQERTNTPRDVSE 360 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 AALAHV K++ AY RSD+ E+RR +M+ WA + + Sbjct: 361 AALAHVLKDKAEAAYARSDFFEKRRKLMERWASYISS 397 >UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QCE7_9RHIZ Length = 418 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 116/409 (28%), Positives = 183/409 (44%), Gaps = 23/409 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M + T L K DG GL L +K SG++ W FRY ++ Sbjct: 1 MPKTTHRLNAISASNIK---KPGLYPDGAGLYLRVKPSGARSWVFRYMH--DRKPRYLGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ--EAKTNTFLLVAERWWNVK 118 G+ +VSL+ AR L +++ L DP E ++ R + +A+ TF AE + Sbjct: 56 GSAASVSLATARSLAGDARRQLDLGQDPIEAKRAAERETAADKARAMTFKECAEAYMAAH 115 Query: 119 KTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + S + W +L R ++P G I++ + + +A+QP+ ET R+ R Sbjct: 116 EPSWKNAKHCEQWHSTLRRYLYPKFGGIAVALVTTEMVFEAIQPIW-HSMPETASRVRGR 174 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTA 229 I V+ +A+ G + ++ ++ D LP LM +R A Sbjct: 175 IEVVIDWAKARGAFSGENPARWRGHLANLLPKPSKVAKVEHHAAMPFDDLPALMSELRAA 234 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + T + +LT R EA A+W E D W +PA RMK +DH VPLS A+ Sbjct: 235 TG--LTSRALEFTILTAARTTEALGAQWSEFDLEKKIWTVPAVRMKAGKDHRVPLSTRAV 292 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 I++ ++ + EF+FP KP + +++ ++ L+R G L HG RS E Sbjct: 293 EIIKELETV-KRNEFVFPGE-KPGRHLSNMSMLMLLRRLK-RGELTVHGFRSTFRDWAAE 349 Query: 350 EG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 FP ++E ALAH +++V AY R D LE+RR +M W A Sbjct: 350 TTSFPNFIVEMALAHAIESKVEGAYRRGDLLEKRRALMVAWMQYCAKAK 398 >UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO Length = 436 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 117/433 (27%), Positives = 200/433 (46%), Gaps = 51/433 (11%) Query: 9 TDTEIKAAKPKDAD--YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 T ++ KP D D Y++ G GL LL++ G K W+ +Y K++ + G +P V Sbjct: 10 THKHVEHLKPSDRDEWYRVAGGTGLRLLVRKQGGKYWRLKYR--FNKKQKTLALGVFPNV 67 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK----KTSV 122 +L A+ ++K +LA +DP + + S N+ A +W + Sbjct: 68 TLKQAKDATIKAKAMLADGVDPGDTK------STNTNDNSLRFYAAKWLEYQSQATARVW 121 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 +ED+ +W+ LE I +GD IT+++ + + ++ V+A+G ET +R+ + Sbjct: 122 SEDHKARVWKRLENGILKKLGDKLITDVRKEDVRRLIENVEAKGHHETAKRIADDTQRLF 181 Query: 183 IYAQNTGLIDAVPSVNIGKAFE--KPQKKNMPSIRPDQLPQLMHTMRTAS--ISMSTRCL 238 Y + ++ + + + + + ++ LP M + + T Sbjct: 182 EYVVDQYSLEDDVDIRLLRPVKVISKPVVHREALDIKNLPFFMQDLANYTQTGRELTALA 241 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 +LT R E ARW+E D + W IPA RMKM R H VPLS AL +++ +K + Sbjct: 242 IELLILTFVRSGELRGARWEEFDLDNKVWSIPAERMKMKRPHEVPLSAKALDVIKRIKRI 301 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGL---------------------------- 330 +G E +FPS KP++PM+ T+ A+ + G Sbjct: 302 TGHYELLFPSETKPDEPMSDNTMRQAMFKMGYFPKAKDTKDGKIAKTYLKYQDNAHYPDG 361 Query: 331 --GGVLVSHGLRSIASTALNEE--GFPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPM 385 V HG R++AS+ L+E F D IE LAHV++N+V+ AY ++++Y ++R M Sbjct: 362 RLKEKAVPHGFRTMASSTLHESDQKFRSDAIERQLAHVEQNKVKDAYSHKAEYWDERVEM 421 Query: 386 MQWWADLVKAADS 398 M+WW D V Sbjct: 422 MEWWGDFVNEQRE 434 >UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWJ5_ARCB4 Length = 410 Score = 340 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 118/413 (28%), Positives = 186/413 (45%), Gaps = 23/413 (5%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 K L D ++K AKP Y L+DG GL L + + +K+W+FRY +R K SF +Y Sbjct: 3 KNNQLQDIQVKQAKPTKETYYLFDGLGLYLEVTPNNAKIWKFRYTY--NGKRKKTSFQSY 60 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P VSL ARK R LL IDP E+ KEQ Q T++F + +W ++K+ Sbjct: 61 PKVSLKQARKKRDNYNELLFDGIDPIEYYKEQKELKQIEDTSSFKNIFTQWLEMEKSKSG 120 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA-RGALETVRRLCQRINEVM 182 +E DI P IG+ I +IK + + ++ + A T +L + + Sbjct: 121 LAQYQWKKTRIENDILPFIGNKKIKDIKIQDVTNVL--IEKNKTAPVTASKLFGYLKSIY 178 Query: 183 IYAQNTGLIDAVPSVNIGK--AFEKPQKKNMPSIRPDQ-LPQLMHTMRTASISMSTRCLF 239 YA+ G I+ +I K Q + P I + L L++++ S + Sbjct: 179 SYAKTKGYIEINLLSDINKTHIISSSQVISYPKITEKENLKDLVNSIYNYQGFYSVKNAL 238 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN----RDHTVPLSDGALAILEMM 295 L R +W IDF+ I MK+ D +PL+D + IL Sbjct: 239 KLVLHLPLRAGNLCNLQWSNIDFDNKLLIISRDEMKVKDKNFDDFRMPLTDEVINILNEQ 298 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG-----VLVSHGLRSIASTAL--- 347 K +G ++FIF P+N ++ N ALK G + HG R + + Sbjct: 299 KSYTGYQKFIFLG-TNNRTPINVESPNKALKIMGFDDEVNGRKITLHGFRGTFRSLIDTL 357 Query: 348 -NEEGFPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADS 398 + F + E AL H +K++V RAY ++SDY+ Q P+M +W+D + + + Sbjct: 358 DIDSNFSFETKERALDHHEKSKVVRAYTHKSDYINQLIPLMNFWSDYILSLKN 410 >UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacter baumannii SDF RepID=B0VTB2_ACIBS Length = 388 Score = 340 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 105/405 (25%), Positives = 193/405 (47%), Gaps = 26/405 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+D ++K+ KPK++ Y + DG+GL + + +G K W Y + ++ ++ G YP + Sbjct: 2 LSDAQVKSLKPKESRYSVADGEGLNISVFPNGKKKWVLSYRQ--NGKQNQKMLGEYPVMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV-TEDY 126 +AR + K+ + A + V E W ++ K+ ++ Y Sbjct: 60 CKEARLQARQLKLE---------------YQGKVANSPPVHKVIEEWLSIMKSQWTSKKY 104 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 D + L + ++ I E++ + K ++ + A+G LET R + +V +A Sbjct: 105 YDTVEYRLA-YLTEDFKNLPINEVERKHISKKIKEIVAKGTLETASRALRLGKQVFDFAI 163 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 + D P + + + + P + ++P+ M+ + S + + T Sbjct: 164 ASDYTDRNPCTLVEDVIPEYESDSHPCLPASEMPEFFRRMQASHSSSIVKMAMLLVCYTG 223 Query: 247 TRPAEAAEARWD--EIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 TR E +ARWD E+DF W IPA RMK ++ VPL A+ + ++ + + Sbjct: 224 TRITELLKARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQIYALFKELESVKIDDGY 283 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-FPPDVIEAALAH 363 IF R KP + M S++V +KR G +V+HG RS+ ST NE F +VI+ +AH Sbjct: 284 IFKKRGKPYEYMTSESVLTMIKRMGYEDKMVTHGFRSLFSTHANESKLFRGEVIDYQIAH 343 Query: 364 VDK----NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 V+K ++ + YNR++Y ++R +M W+A+ V+ G+ + Sbjct: 344 VNKSTKADKTSKIYNRAEYWDERVELMTWYANEVEGWIKGAYLAP 388 >UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepID=B7UP04_ECO27 Length = 405 Score = 340 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 133/397 (33%), Positives = 192/397 (48%), Gaps = 18/397 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKS-SGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTDT+ + KP D GLTL S G W FRY P+T++R G YP V Sbjct: 4 LTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEV 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV-TED 125 S+++A + + LA DP E +K S++ TF A R Sbjct: 64 SIAEAARTARIMREQLAAGDDPLEIKK---AESEKVVIPTFADAARRVHAELSPGWENPK 120 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + +LE FP +G ++ I A + + ++PV + ET R+ QRI+ VM + Sbjct: 121 HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLS-ETASRVKQRIHVVMQWG 179 Query: 186 QNTGLIDAVPSVNIGKAFEKPQK---KNMPSIRPDQLPQLMH-TMRTASISMSTRCLFMW 241 G A P + + + ++ P++ QLP + ++ T TR L + Sbjct: 180 WAHGFCVANPVDVVDHLLPQKTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLM 239 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 +LT TR EA RW EIDF+ W IPA RMK H VPLS A+ ILE ++ L Sbjct: 240 VILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAMHILENIRGL--H 297 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAG----LGGVL-VSHGLRSIASTALNEEGFPPDV 356 E +FPS K Q ++ + + L++ + G + +HG RS +E+G+ D+ Sbjct: 298 DELVFPSPRK-QQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDL 356 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E ALAH KN+V AY+R+D LEQR PMMQ WAD V Sbjct: 357 AERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV 393 >UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1ATP4_PELPD Length = 449 Score = 340 bits (872), Expect = 8e-92, Method: Composition-based stats. Identities = 101/451 (22%), Positives = 172/451 (38%), Gaps = 50/451 (11%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFG 61 A K TDT I+ KP ++DY +G+G T+ + SGSK W + Y +R K + G Sbjct: 8 AMKKTTFTDTMIRKLKPTESDYTRSEGNGFTIRVMPSGSKTWLYLY--AFDGKRRKMNLG 65 Query: 62 AYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS 121 +YP V+L AR ++K + +IDP +EQ ++A T + + Sbjct: 66 SYPDVTLETARGRFEDAKRKVKNNIDPMAEAEEQAEERRKA--PTVADLVHDYIERHAKR 123 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 +A D + L R++ PA G ++ +++ ++ + R A Q I ++ Sbjct: 124 FKRSWAKD-EQILNREVVPAWGKRKAADVTKRDILRLLEEIVNRNAPAMANNTFQIIRKM 182 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTM--RTASISMSTRCLF 239 +A ++ P + P+ + ++ L + A +S R Sbjct: 183 FNWAVEQDILQHTPCTGVK--LPSPKLSRDRVLSESEIKTLWENLGRPDAGMSDGVRRAL 240 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 L T RP E E + W IPA R K + H V LS AL I+ + Sbjct: 241 RLILTTAQRPGEVTGLHTSE--LDGCWWTIPAERAKNGKTHRVYLSGLALEIINQAIAQA 298 Query: 300 GGR----------EFIFP-SRIKPNQPMNSQTVNAAL----------------------- 325 ++FP +PM + A+ Sbjct: 299 KKSRETPYDQEYNGYVFPCHHKSKEKPMGDTALAVAVGRALASPLTDDKGNPLFTAAGKP 358 Query: 326 ---KRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQR 382 R G+ H LR +T + GF +VI+A L H K V + YN+ Y ++ Sbjct: 359 ATENRLGI-DHFTPHDLRRTTATFMASMGFMDEVIDAVLNHA-KQGVIKVYNQYRYDVEK 416 Query: 383 RPMMQWWADLVKAADSGSIVLTHLSKIRLVG 413 + ++ W + +K +G V+ K + Sbjct: 417 QQALETWENKLKTILAGDKVVDLDQKRKERN 447 >UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family n=1 Tax=Citreicella sp. SE45 RepID=D0D2S4_9RHOB Length = 479 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 114/400 (28%), Positives = 192/400 (48%), Gaps = 25/400 (6%) Query: 1 MARKTKP------LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQ 54 MAR P LT +KAA +DG GL LL+K +GS+ W R + + Sbjct: 91 MARDVTPRKPEKALTAQRVKAATDPGK---YFDGHGLYLLVKPNGSRSWVQRI--VIRGK 145 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 R + G+ V+L++AR+ ++ + DP + ++E + TF A + Sbjct: 146 RREMGLGSASLVTLAEAREAALANRKVARAGGDPIQARQEALAVL------TFEEAARKV 199 Query: 115 WNVKKTSVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 + + + + +A +LE FP IG + + ++ + +++ + P+ ET RR Sbjct: 200 YEMHRPTWRNPKHASQFINTLETYAFPKIGAVKVGDVNTNDVLRVLTPIWTT-KPETARR 258 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKK--NMPSIRPDQLPQLMHTMRTASI 231 + QRI VM +A G P+ I +A K ++ + ++ ++P + T++ + Sbjct: 259 VRQRIGMVMKWAVAKGWRQDNPAEAISQALPKHDRRKAHRKAMPYAEVPGFIATVKASKA 318 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 T+ + +LT R E A W EID A+ W +PA RMK R+H VPLS AL I Sbjct: 319 GALTKLAMEFLILTAARSGEVRGASWSEIDSEAAIWTVPADRMKAKREHRVPLSPRALEI 378 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-E 350 L + +S G + +FP + +P++ T++ + G + HG R+ E Sbjct: 379 LSEARAISDGSDLVFPGSRR-GRPLSDMTLSKLTRELGFA--VDVHGFRTSFRMWAQEQT 435 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 P +V EAALAH +N+ AY RSD E+RR +M+ W+ Sbjct: 436 DAPREVAEAALAHTIRNQAEAAYARSDLFERRRSLMERWS 475 >UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=C7JAN4_ACEP3 Length = 404 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 111/404 (27%), Positives = 189/404 (46%), Gaps = 22/404 (5%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M+R + LT ++ A K L DG GL L + +K W FR+ P++ R + Sbjct: 1 MSRVSPHQLTARQVSALKGGS----LCDGGGLWL-VAQGAAKSWFFRFTSPISNTRREMG 55 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G+ +SL++ R+ E++ L+A +DP + +++ ++ TF +A+R+ Sbjct: 56 LGSVHDLSLAEVRRKATEARHLVAAGLDPIDERRKLKAQRKKESGLTFSDIAKRYVKEMA 115 Query: 120 TSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + +W SLER +FPA+G ++EI+ ++ ++P+ ET R+ RI Sbjct: 116 PGWRNARSSTVWTSSLERHVFPAMGGKLVSEIETEDVLAVLRPIWKT-TTETADRVRGRI 174 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTAS 230 ++ +A+ G D + +++P++ + ++M + A Sbjct: 175 ERILDFARTHGWRDGENPARWRGHLANILPKPSAVAKARHLPAVNRKDIGKVMAKLAQAE 234 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + + LT R E +A W EID W IPA +MK ++H VPLS GA+A Sbjct: 235 G--ISPKAVRFACLTAARSGEVRQAVWSEIDLVTKIWTIPAHKMKAGKEHRVPLSAGAIA 292 Query: 291 ILEMMKPLSGGR--EFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 +L+ + P R + +FP K +P++ ++ AL A + HGLRS Sbjct: 293 VLQEVLPFRDKRAGDLVFPG-GKRGRPLSDVVLSKALHSAAGTKDVTVHGLRSTFRDWAA 351 Query: 349 -EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 E +P +V E ALAH ++V AY R D +RR MM W D Sbjct: 352 EETDYPGEVAEMALAHTISDKVEAAYRRGDLFNKRREMMTAWND 395 >UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=Proteobacteria RepID=A2SG96_METPP Length = 466 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 111/442 (25%), Positives = 188/442 (42%), Gaps = 38/442 (8%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFG 61 + + LTD ++KA KP+D Y++ D DGL + SG+ ++ Y + ++R + G Sbjct: 15 PLRARSLTDLQLKALKPRDKAYKVSDRDGLYAYVAPSGTVSLRYDYR--IGRRRETLTLG 72 Query: 62 AYPA------------------VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAK 103 Y A +SL++AR L ++K L + + P + EQ E+ Sbjct: 73 RYDATAPARVPRSLDVLEYGMGLSLAEARLLLTKAKRALEQGVSPSRAKAEQKAA--ESD 130 Query: 104 TNTFLLVAERWWNVKKTSVTE------DYADDIWRSLERDIFPAIGDISITEIKAHTLVK 157 TF AER++ K ++ + +R + +G + + EI + L Sbjct: 131 ALTFGKWAERYFEFKGDPKSKGEQLADSTLAMRRSTYKRALEKPLGKLMLEEITPNRLAA 190 Query: 158 AVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPD 217 ++A+ + + V + Q G+ P+ + + + ++ P Sbjct: 191 LCDDIKAQRGPAVAVHAREIVLMVYRHVQRKGIEVPNPAERVQASAIARFEPRDRALSPS 250 Query: 218 QLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMN 277 +L + + + + R + LLT R E A WDEI F+ W IP+ RMK Sbjct: 251 ELRLFLAALDQCATMPTLRLAVRFVLLTGVRKGEFIGATWDEIVFDTETWTIPSRRMKGG 310 Query: 278 RDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG----- 332 R H V LSD A+ IL ++ ++ P R + P++ T+N + + G Sbjct: 311 RAHVVYLSDQAMDILTTLRSCFSASRYLHPGRYDSDLPISDATLNRVIA-MAIRGIQATA 369 Query: 333 ----VLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQW 388 H LR ST+LN F IE ALAHV +N + YN + Y +RR MMQ Sbjct: 370 PEFQPFTVHDLRRTFSTSLNRAKFDERWIEMALAHVPRNRIAATYNVARYAAERRIMMQA 429 Query: 389 WADLVKAADSGSIVLTHLSKIR 410 WAD++ + G + K + Sbjct: 430 WADMLDLWEKGESAKEVILKAK 451 >UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZM1_SULD5 Length = 416 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 114/415 (27%), Positives = 181/415 (43%), Gaps = 19/415 (4%) Query: 1 MARKTKPL-TDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + + L TD EIK KP+D Y D +GL +LI G K+W+F Y P ++ K + Sbjct: 1 MPKISTSLLTDKEIKNFKPEDKPYIKSDINGLRILIHPDGRKIWEFVYTSPTLYKKRKST 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 FG YP +L +AR R L+ + IDP + Q+E+ + K + F V W+ ++ Sbjct: 61 FGTYPKTTLKEARDKRETYLNLIKQGIDPIDAQREEKAEVKLQKESDFSNVVNLWFQSQE 120 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + + + + P + SI EIK LV+ + ++A ET +RL + Sbjct: 121 SHIVHSTYKKKRALFDTTVIPVLKHKSIAEIKHDELVQII-KIKAIQTPETAKRLLGYFH 179 Query: 180 EVMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTR 236 ++ +A G D NI K KK+ I P L QL++++ T +ST+ Sbjct: 180 DLWQFACTHGYCDFNIVPNIHAKSVLPKIVKKHYACITDPSILKQLVNSIYTYGGHISTK 239 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARM--KMNRDHTVPLSDGALAILEM 294 + L R +W +DF IP M K D +PLSD A+AIL+ Sbjct: 240 NALKFVLHVPLRAGNLVSLKWAYVDFEKHLITIPRKEMKAKSGDDFILPLSDEAIAILQE 299 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL-----GGVLVSHGLRSIAS----T 345 + +EF+F ++ T + AL+R G G H R+ T Sbjct: 300 QYLYTSHKEFVF--VADNGLHIDEVTPSRALQRMGFNNETLGNKQRLHSFRATFRSLVDT 357 Query: 346 ALNEEGFPPDVIEAALAHVDKNEVRRAY-NRSDYLEQRRPMMQWWADLVKAADSG 399 E + E L H+ + V RAY ++ Y E+ R ++ WW+ + A Sbjct: 358 HQMEHRSSYEAKEKVLDHIVGSGVERAYTQKAIYTEEMRLLLTWWSGYILAMMDS 412 >UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP99_HAHCH Length = 416 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 110/417 (26%), Positives = 186/417 (44%), Gaps = 19/417 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSK---LWQFRYYRPLTKQRTKQSFGAY 63 L+DT+I+ AK + D L DG+GL+L I K W FRY RP TK+ K S G Y Sbjct: 3 KLSDTKIRNAK-TETDTCLSDGNGLSLRIYPKRGKIARTWVFRYRRPATKKPAKLSLGDY 61 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK--TS 121 P +SL AR+ + L + +DPQ QKEQ + A T + E W ++K Sbjct: 62 PVISLRAARQQAEIMRQQLFEGLDPQYVQKEQRAEN--ANAITTQQLFESWLTLQKSAKE 119 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 VT+ D + ++G + + + + + A+G E R+ + + Sbjct: 120 VTDRTLADHEARWRVHLEKSLGPLLAKHVIRRQIAAVLDSMVAKGIKEETRKCLCLLKML 179 Query: 182 MIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 +A+ LI P + ++ +L + +ASI+ +T F Sbjct: 180 FRFAEERHLIKENPIEGLSAKSFKITAGAPRDRALPLSELRSFWRLLDSASITPATANAF 239 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 +LT R E RW E+D W +P R K + HT+ L + A+ ++E M+P+S Sbjct: 240 KLLILTGARRGEVTMMRWSELDLTQGMWVLPPERTKNRKAHTLYLPNLAMRLIESMRPIS 299 Query: 300 GGREFIFPSRIKPNQPMNSQTVNAALKRAGLG----GVLVSHGLRSIASTALNE-EGFPP 354 G E++ S P++++ + L+R H LR A+TA E P Sbjct: 300 GHGEYVL-SLGNGITPLSTEGLTVTLRRLSTRLESVPHFTVHDLRRSAATAWGEHLKTSP 358 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS---GSIVLTHLSK 408 VIE L H ++ + Y R+ Y+++++ + W ++V+ + G++V H + Sbjct: 359 HVIEKMLNHQPRDRLVATYQRAAYIDEQKMAWKAWGEMVENHVANDFGNVVPLHARQ 415 >UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresistens RepID=C6RLT7_ACIRA Length = 405 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 114/404 (28%), Positives = 188/404 (46%), Gaps = 21/404 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L D +IK K KD Y++ D GL L ++++GSK W++RY + + G YP +S Sbjct: 2 LNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPK--MLTIGPYPEIS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 LS AR E + +LAK++DP QK+ + ++ +A +TF ++ + K + ++++ Sbjct: 60 LSYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWY 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQ------PVQARGALET-VRRLCQRINE 180 ++ R ++DI P IG+ I E+ ++ + + RG E + Q E Sbjct: 120 ENRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICAE 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 VM YA T I P++ + +P + + ++ + + T+ Sbjct: 180 VMQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQNALR 239 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIP----------AARMKMNRDHTVPLSDGALA 290 L ++ R E A+ ++ + IP MK NR H VPLS L Sbjct: 240 TALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLSTQMLE 299 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350 I++ L ++FP + T+N AL GL G + H R+ AST LNE+ Sbjct: 300 IIKEQLQLYPDSIYLFPGD-DGISMLGKNTLNEALVNMGL-GHITMHDFRATASTYLNEQ 357 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 + D IE LAHVD + R +YN + +L+ RR MMQ AD + Sbjct: 358 NYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMMQHLADTID 401 >UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8T8_ACIBT Length = 425 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 110/419 (26%), Positives = 185/419 (44%), Gaps = 31/419 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L DT++K KP+D Y+ D D L + ++ SG K+W ++ L K+ ++G YP++S Sbjct: 2 LKDTQVKNLKPQDKPYRKLDADRLYIEVRPSGKKVWIHKF--SLNKKEGSITYGEYPSIS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR A + LLAK I+P H+ E R + E + TF + W K +EDY Sbjct: 60 LAEARYYHARDRALLAKGINPVAHRNETARLALETEQETFKKYGDEWKEKHKIDKSEDYK 119 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQAR-------------GALETVRRL 174 I L+ DI+P IG + ++ + ++ + R T Sbjct: 120 KLIEYGLKTDIYPVIGHLHPKDVTSKHVLLIINNTMERIRTSTRSQKLKPSTGETTAIVN 179 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMS 234 I +M GL + P+ + ++ + + + ++ +L + + + + Sbjct: 180 KTFIGMIMRSCIMKGLAEVDPTYAVKGVIKRQKINHARPLSMKEIRELKERIPLYNGAQT 239 Query: 235 TRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIP----------AARMKMNRDHTVPL 284 TR + T+ R E W +D+ P MK N+ H +PL Sbjct: 240 TRNALNFLFYTMLRTIEVRRLEWAWVDWENKTITFPERTFQEIIEGKRAMKNNKIHLLPL 299 Query: 285 SDGALAILEMMKPLSGGREFIFPSR-----IKPNQPMNSQTVNAALKRAGLGGVLVSHGL 339 SD A +IL+ ++ +F+F S KP + + T+N AL + + H Sbjct: 300 SDQAFSILKEQYTITAKCQFVFSSPMQLTLGKPEKMLGRSTLNFALDALKMND-VSPHDA 358 Query: 340 RSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 R+ AST LNE G IE L+H D ++ R YN + +L RR M+QW+AD + Sbjct: 359 RATASTYLNELGSDDRWIEKQLSHTDNDKTRATYNHAKWLRNRRSMLQWYADFLDGKAE 417 >UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR9_9PROT Length = 391 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 95/400 (23%), Positives = 169/400 (42%), Gaps = 16/400 (4%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 TD IK+ +P +++ + G + + ++G+K + F Y + Q+ + SFG Y Sbjct: 1 MKFTDRSIKSIRPTGKRFEVRETGRTGFAVRVSTTGTKTFVFIYK--INGQKKRLSFGTY 58 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 PA+SL++A L E+K+ L K DP + ++ E T + + + N V Sbjct: 59 PAMSLNEAHLLYEEAKLELEKGNDPALIK--AKKSQLEKNEVTIPELIKLYINQYAK-VR 115 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + ++ R L +DI P + EI + + + RGA RL + +V Sbjct: 116 KTSWEEDERQLNKDILPRWKNRKAIEINKSDVHAVLDTLIERGAPIGANRLLAVLKKVFN 175 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 YA+ G + P I + + +++ H + ++ ST+ +QL Sbjct: 176 YAKEKGYVTNNPCDEITP--PATETSRDRVLTANEIKTFWHQLDCTNMHSSTKNALKFQL 233 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 +T+ R E A ARW++I + W IPA K + H V LS A +L K S Sbjct: 234 ITLQRRKEVALARWNDIHGD--TWVIPAGTAKNKKRHDVHLSQFAKKLLIEAKSYSKDSP 291 Query: 304 FIFPSRIKPN-QPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTALNEEGF-PPDVIE 358 F+FPS + + ++ A+KR H LR A+T L + V+ Sbjct: 292 FLFPSPCGAGSKHIRPDALSKAVKRNMETLMVQDFSPHDLRRTAATFLTKSKIANRLVLS 351 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 L H V Y++ +Y +++ + W ++ + Sbjct: 352 LMLNHSQGKSVTAVYDKYEYFTEQQKAWEAWGVKLEEIIA 391 >UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RKK3_ACIRA Length = 426 Score = 333 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 113/428 (26%), Positives = 190/428 (44%), Gaps = 39/428 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRY----YRPLTKQ-- 54 M +K+K L+ + K + + DGL L ++ + S++W R + Sbjct: 1 MPKKSKELSALSVAKIKNT-GRHSVGGVDGLCLNVEGN-SRVWILRAVVGKRLDKDGKLK 58 Query: 55 --RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNS--QEAKTNTFLLV 110 R G YP VSL++AR E ++ + IDP H++EQ+ Q+ + TF+ Sbjct: 59 PHRRDIGIGPYPEVSLAEARAKATELRLQIRSGIDPIAHKQEQLEKLYVQKLRDKTFMEC 118 Query: 111 AERWWNVKKTSVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALE 169 A+ K + E + +LE I+P +GDISI I + + ++P+ + E Sbjct: 119 AKVVIANKTRELKNEKHIGQWTSTLETYIYPTLGDISIGTITKVDIAEVLRPIWIK-KNE 177 Query: 170 TVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFE------KPQKKNMPSIRPDQLPQLM 223 T +R+ RI + YA+ G + E K + + PS+ +Q+ + Sbjct: 178 TAKRIRGRIETIFDYAKAMGYFEGDNPAEWKGNLEPIFGNIKQESRPHPSLPYEQVAGFI 237 Query: 224 HTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVP 283 +R + + +LT R E A+W EIDF W IP RMK N++H VP Sbjct: 238 QHLRQKKG--ISPKALEFAILTACRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVP 295 Query: 284 LSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA----------GLGGV 333 LS A+ +L+ ++ + ++FIFP+ ++ ++ +KR G Sbjct: 296 LSQEAVNLLKSIQEYTQPQDFIFPAPRN-GAMLSDMSLTILIKRMHEQKLKENGLGYIDP 354 Query: 334 -----LVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQ 387 + +HG RS + +P +V E LAH +EV AY R YLE+R+ +M Sbjct: 355 KQNRVITTHGFRSTFRDWSADKTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMA 414 Query: 388 WWADLVKA 395 WA+ A Sbjct: 415 DWAEFCSA 422 >UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q013_9GAMM Length = 455 Score = 333 bits (854), Expect = 9e-90, Method: Composition-based stats. Identities = 113/428 (26%), Positives = 197/428 (46%), Gaps = 18/428 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYD--GDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M ++ +D I + K + +Y + L L+++ + +K W FRY P T + + Sbjct: 1 MEKRKPITSDRSISSHKAEAKEYLVPVKGRPKLYLMVRPNETKSWLFRYTSPNTGKSQRI 60 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 SFG YP+++L+ A + E + LL+K+IDP++++K + E TF A+ +++ Sbjct: 61 SFGIYPSITLARAHDIWQEYQDLLSKNIDPRDNRKAVKQALLENDDRTFGRFADEYFDTL 120 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAV-----QPVQARGAL-ETVR 172 KT + + L+ + + + I EI ++ + Q V+A G E Sbjct: 121 KTILKPNTLQRKLNCLKL-LKDSFAETPIDEITPPQMLSMLIDVQNQFVKADGKPTEKAE 179 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPS-IRPDQLPQLMHTMRTA-- 229 R +++ YA G P+ + KP + P+ I+PD+ +L+ + + Sbjct: 180 RCASIASDIFKYASARGFCSTDPASMVKSQLIKPVYGHRPAIIQPDKFAKLLQDIDSLKD 239 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPA----ARMKMNRDHTVPLS 285 + +T + R + RW ++DFN ++W+ + M RD VPL Sbjct: 240 KVDSNTNSSLRLLPMLFVRNGDLRRMRWADLDFNEAKWRFQPLKGEGKEHMVRDMVVPLP 299 Query: 286 DGALAILEMMKPLSGGREFIFPSRI-KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAS 344 A+ IL+ ++G EF+F S K N ++ T N LK G V HG R+ A Sbjct: 300 RQAIEILQHQYKINGHSEFVFYSPSAKKNGIISDNTANKHLKELGYQNVHCVHGFRASAK 359 Query: 345 TALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVL 403 T L E +P ++E L H+ K++ AY R ++LE R MMQ WAD + A + V Sbjct: 360 TMLQEQLKYPAVIVEMGLGHITKDQNGTAYGRFEFLEDRAEMMQTWADYLDALRNDEDVS 419 Query: 404 THLSKIRL 411 ++ L Sbjct: 420 RFKNRTSL 427 >UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FSX1_PSYA2 Length = 444 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 103/415 (24%), Positives = 178/415 (42%), Gaps = 20/415 (4%) Query: 1 MARKTKP----LTDTEIKAAKP----KDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLT 52 MA + TD++IK A D Y + GL L I+ + + ++ R+ P+T Sbjct: 32 MANQKLKDAGIKTDSQIKQAIKEHDSGDEVYTIQGYKGLNLYIRDNKTTTFRHRFTSPVT 91 Query: 53 KQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAE 112 +R + GAYP +L AR + + LLA IDP H ++ +++ TF +A+ Sbjct: 92 GKRKNFTLGAYPVFTLEQARDMYRNNLSLLAGGIDPVFHHQDAH--NKKRAMPTFSELAD 149 Query: 113 RWWNVKKTSVTEDYAD-DIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETV 171 W + S ++ + R+ IG + I IK +++A++ ++ + T Sbjct: 150 EWLQSQIASKQFEHRTIEQKRTHIAYAAAYIGRMPIDHIKTPDVLRAIKDIEKKTIP-TA 208 Query: 172 RRLCQRINEVMIYAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSI-RPDQLPQLMHTMRTA 229 +R+ + A G ID P++ + KP+ ++ +I P +L+ + + Sbjct: 209 KRVRGVCQRIFALAIGQGYIDNNPAIAVADLMLPKPKTEHHHAIIEPIAFGKLLSDIDSV 268 Query: 230 -SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHT----VPL 284 + + Q L R + RWD IDF+A W + D VPL Sbjct: 269 TDFYGHAQNILKLQALLFQRNGDMCSMRWDAIDFDAKTWTFSPQKTGNRGDMVASLVVPL 328 Query: 285 SDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAS 344 A+ L + L+ ++F + + + + Q +N L R G V HG R+ A Sbjct: 329 PTQAIEHLRALHALTSKTPYVFYNSRRKEKFEHQQQLNKFLWRLGYKDVHTPHGFRASAR 388 Query: 345 TALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 T + E G + E L H ++ RAYNR +++RR MMQ WAD + Sbjct: 389 TLMVEQLGISETLAELQLGHNVRDANGRAYNRVTMIDKRRDMMQRWADYLDQLRR 443 >UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU Length = 419 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 111/396 (28%), Positives = 178/396 (44%), Gaps = 21/396 (5%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT +K D DG GL L + ++ K W FRY L KQR + G +PA+ Sbjct: 3 KLTPKFVKDV---DQPGSYQDGRGLILRVSATLRKSWVFRYM--LAKQRHDLALGTFPAL 57 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERWWNVKKTSVTE 124 SL DAR + ++ +A+ +DP + + T TF AER+ +S ++ Sbjct: 58 SLRDARLEADKYRLDIARGVDPAAERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSK 117 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + SL + ++PAIG I E+ ++ + P+ ++ T R+ RI V+ Sbjct: 118 KHHQQWQNSLTKHVYPAIGGFRIAEVDTDDILDVLTPIWSK-IPVTANRVRNRIELVLDA 176 Query: 185 AQNTGLIDAVPSVNIGKAFEK------PQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 A+ L +K PS P + +L+ + + S Sbjct: 177 AKALKLRQGENPARWRGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGS--AARA 234 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 + +LT TR E + A+W EID+ W IPA RMK + H VPL++ L +L + + Sbjct: 235 VEFAILTATRNQEVSGAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLR--QQV 292 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN-EEGFPPDVI 357 ++IF + + P+ + L + + G +V HG RS T E +V Sbjct: 293 GKHDKWIFLNSWRTG-PIPGNAMARVLDQLQVDG-VVPHGFRSTFRTWAAEETDHQREVC 350 Query: 358 EAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 E ALAH ++V AYNR D L++RR +M+ W D + Sbjct: 351 EMALAHTLNSKVEAAYNRGDLLDKRRALMKDWGDFL 386 >UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1 Tax=Geobacter sulfurreducens RepID=Q74H29_GEOSL Length = 439 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 94/452 (20%), Positives = 168/452 (37%), Gaps = 67/452 (14%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR++ +D ++A KP++ Y + +GDG + + SG++ + + Y +R + Sbjct: 1 MARQSTKFSDKFLRALKPQEKPYDIREGDGFGVRVFPSGARSFFYMY--HFDGKRRFLNL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP +SL+DAR+ ++ AK IDP +EQ R +EA T + + + Sbjct: 59 GKYPQLSLADARQKHRDAVSQHAKGIDPLAATQEQKRERREA--ITVADLIDEYVKNWAK 116 Query: 121 SVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 E A + R+L +D+ P G +IK + ++ + RG+ R + + Sbjct: 117 VYKVERSATEDERALSKDVLPYWGKRKAKDIKRTDAIALLERIVRRGSPGQARNILKVGR 176 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 ++ +A ++A P I KA + + ++ + + ++ S T+ Sbjct: 177 KMYEFAIERKYVEANPFSRISKAVPATMPRTRSRVLTESEIKYIWSAIDKSAGSDETKRA 236 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-----------DHTVPLSDG 287 L+T RP E EID W IP R+K + H V LS Sbjct: 237 LKLILVTAQRPGEVIGMHRREIDGE--WWTIPPERIKTEKDRTRSNSVGPQPHRVYLSPL 294 Query: 288 ALAILEMMKPLSGGREFIFPSRI--------------------------------KPNQP 315 AL ++ +IF S P P Sbjct: 295 ALELI------GDKDGYIFESPRGGAMDSKALSHVVHAAPLVPELVRDTEGHVFAGPCGP 348 Query: 316 MNSQTVNAAL-KRAGLGGV--------LVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 + ++ + L K H LR A T ++ P E L H Sbjct: 349 VAAKALMQLLEKEIAYPDKEKYYGLTRWTPHDLRRTARTRMSAINIPTRHAERVLNHTLP 408 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 +++ Y+ Y Q++ + WA ++ Sbjct: 409 -GIQKTYDLYRYDPQKKAALTKWAAYLEELLR 439 >UniRef50_C9M6R5 Site-specific recombinase, phage integrase family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R5_9BACT Length = 393 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 131/407 (32%), Positives = 188/407 (46%), Gaps = 23/407 (5%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LTDT IK K + Y + DG+GL LL+ +G K+W RY+ + K+ + + G YP + Sbjct: 2 LTDTAIKRLKLGETRYLILDGNGLYLLVCPNGRKVWTVRYW--IDKKLHQLTIGDYPMMG 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L++AR R E K D + +K TF A W+ +K A Sbjct: 60 LAEARAERDEIK------NDARYEKK-----VAAPMGLTFGEFAREWYEKRKRPKLSKSA 108 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 ++ R + P + +TEI +V + + + ETVRR ++ VM YA Sbjct: 109 QALYDLRFRYLDP-LMARPLTEITREEIVDTLHKLSEQHPAETVRRTGGIVSMVMGYALA 167 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCLFMWQLLTI 246 T I PS +G K MP+ ++ LM + + S+ R T Sbjct: 168 TRKIPYDPSSQLGLELPIHVSKPMPAATHASEIGVLMRALESID-SLVLRSAIQLIAYTF 226 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 R EA ARWDEID W +PA K DH VPLS A+ IL+ ++ GG+ IF Sbjct: 227 VRSGEACLARWDEIDLKEGLWSVPAEHTKTKLDHLVPLSRQAVMILDTLRRRFGGKGHIF 286 Query: 307 PSRIKPNQPMNSQTVNAALKRA------GLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 PSR + + T++ + + V HG R+ AST LNE + DVIEA Sbjct: 287 PSR-NRGKLVIPSTLSREMVKLQSLPLEARPIPTVVHGFRATASTVLNEHQWNRDVIEAQ 345 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLS 407 L H ++N+ RRAYNR++YL R MMQW+AD + A G Sbjct: 346 LGHFERNKSRRAYNRAEYLPIRISMMQWYADYLDALRDGRPKPERPK 392 >UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7T3_LARHH Length = 416 Score = 330 bits (848), Expect = 4e-89, Method: Composition-based stats. Identities = 121/410 (29%), Positives = 186/410 (45%), Gaps = 18/410 (4%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLL-IKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LTD + +P D GL L+ +K G+ W FR+ P +K+R G YPA+ Sbjct: 4 LTDRQAANIRPTDKAKAHGGVVGLWLIPLKEKGTGRWIFRFTSPTSKKRRDLGLGKYPAI 63 Query: 67 SLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN-TFLLVAERWWNVKKTSVTED 125 ++ A +L +++L+ + IDP +H++EQ ++ A TF A + Sbjct: 64 TIKQAGELGEAARLLVLQGIDPIDHKREQEAAAEAANERITFEQAAIHTHETLSPGWSNR 123 Query: 126 YADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 +A W SL R +FP IGD + ++ + P+ ET R+ QR+ VM + Sbjct: 124 HASADWINSLRRHVFPKIGDKPVADLVRRDFAAVLLPIWL-VLPETAARVRQRMQTVMEW 182 Query: 185 AQNTGLIDAVPS-VNIGKAFEKP-----QKKNMPSIRPDQLPQLMHT-MRTASISMSTRC 237 LI A + + K ++++ P++ LP + + R Sbjct: 183 CLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAAHLGEGRPVSVARP 242 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + + +LT R E WDE+D +A W IP RMK H VPLSD A+AIL + Sbjct: 243 MLEFLILTAARSGEVRGMVWDEVDLSAKVWTIPGERMKAGATHQVPLSDRAMAILRQQRE 302 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAG-----LGGVLVSHGLRSIASTALNEEGF 352 +FP + ++ T+ L G HG RS E G+ Sbjct: 303 RHPFSAMVFPP--NRGRVVSDMTLTRYLHEVDAPSDTEGRHATVHGFRSTFKDWAIEHGY 360 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 P ++ E ALAH+ KN+V AY+RS LEQRR +MQ WAD V++ +G I Sbjct: 361 PGELSEKALAHMIKNKVEAAYHRSSQLEQRRALMQAWADYVESGRAGGIT 410 >UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholderiales RepID=A1W6C2_ACISJ Length = 459 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 101/401 (25%), Positives = 173/401 (43%), Gaps = 24/401 (5%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 + LT ++ + DG+GL L I + K W FRY R G Sbjct: 4 IEKLTALKVTRL---SKPGRYSDGNGLYLQITKALVKSWIFRYARGTG--EHFMGIGPVH 58 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQ--VRNSQEAKTNTFLLVAERWWNVKKTSV 122 V+L++AR+ ++++LL +DP H+ E + +A F + + K S Sbjct: 59 TVNLAEAREQARKARLLLRDGVDPLMHRAEALAKAKAVQASNKIFRDCMDEYIKSHKESW 118 Query: 123 T-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 E + +L P G + + I +++ ++P+ ET R+ +RI V Sbjct: 119 RNEKHQKQWEATLVEYACPVFGKMHVRLINTPLVLQVLEPIWKT-KTETASRVRERIERV 177 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTASISM 233 + +A G + ++ + ++ PS+ + + + Sbjct: 178 LAWATTQGFREGENPARWRGHLQELLPKPSKLKKVRHHPSLPYGHVGAFVRLLAREKG-- 235 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 + +LT R E A+W+EID +A W IP RMK +++H VPL A+ +LE Sbjct: 236 IAARALQFTILTACRTGEVIFAKWNEIDLDAKVWIIPKERMKAHKEHRVPLVRDAVTLLE 295 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEG-F 352 ++ L ++FP K N+PM++ + L+R + HG RS T E + Sbjct: 296 RLRGL--DPVWVFPGA-KQNRPMSNMAMANVLERMQRSD-ITVHGFRSTFRTWAAERTLY 351 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 P ++ E ALAH EV AY R+D E+RR +M+ WA+ Sbjct: 352 PKEMPEMALAHKVGTEVEEAYRRTDLFERRRALMRDWAEWC 392 >UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus taiwanensis RepID=B3R9I1_CUPTR Length = 412 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 102/403 (25%), Positives = 162/403 (40%), Gaps = 18/403 (4%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 L + I+ +K + + DG+GL L ++ SG+K + RY + R + G +P + Sbjct: 3 KLNNRLIERSKIQPKTKFIADGEGLYLRLEPSGTKTFCLRYT--VAGSRKLKVLGTFPDM 60 Query: 67 SLSDARKLRAESKVLLAKDID-PQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 ++ ARK +E + LL P T +A W ++ Sbjct: 61 DIAAARKQASEMRELLEVHDSLPSA----SKEVDALTSPITVAQLATEW-EMRYCRQRYK 115 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 D L+ DI P IG + + + + + RGA R + + YA Sbjct: 116 RPDKELHYLKSDIVPVIGQELVQNVTGRHVSLVIGKIVDRGARTKANRTLCVLKSLFGYA 175 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMR--TASISMSTRCLFMWQL 243 G IDA P K +K + P ++ L H + ++ T+ L L Sbjct: 176 VEHGYIDATPVAMTKKGAGGAEKARSRVLNPKEIETLWHALDSRRRRMNWRTKALLKLIL 235 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 LT RP E RW+++D W +PA K +RDH V LS A++IL+M + +GG Sbjct: 236 LTAQRPGECCGMRWEDVDLANGIWFLPAELTKSDRDHVVHLSHMAVSILKMAEKETGGSV 295 Query: 304 FIFPS-RIKPNQPMNSQTVNAALKRA------GLGGVLVSHGLRSIASTALNEEGFPPDV 356 ++F S + + A+ R G H LR AST + G P + Sbjct: 296 YVFNSVVKGRDVATTVDALTRAVARMLANGEFGAMKRFTPHDLRRTASTGMANAGVYPHI 355 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 E L H K V YN +YL +R+ M+ W L++ Sbjct: 356 TEKILNHRMK-GVLAVYNHGEYLPERKAAMELWGRLIEGWVGN 397 >UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobacteriaceae RepID=B7UT12_ECO27 Length = 411 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 110/412 (26%), Positives = 173/412 (41%), Gaps = 29/412 (7%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRY----YRPLTKQ----R 55 + K L+ + K + Y + + DGL L I+ + S+ W + R Sbjct: 7 RAKELSGLVVSRLK-SEGMYAVGNVDGLYLRIR-NQSRAWVLCVAMGTRINNLGRTVPRR 64 Query: 56 TKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ--EAKTNTFLLVAER 113 G YP VSL++AR E + + I+P + + EQ + K TF E Sbjct: 65 LNMGLGPYPEVSLAEARDKARELRKQIRNGINPLQEKHEQKARQEILARKKKTFAECCEE 124 Query: 114 WWNVKKTSVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 VK + + + + +LE +P IG +++EI L+ ++P+ ET Sbjct: 125 VLEVKDSEMKNKKHLAQWRSTLETYAYPFIGKKAVSEITKVDLLAILEPIWLT-KNETAS 183 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMH 224 RL RI V+ YA+ + + K+ ++ +Q+ M Sbjct: 184 RLRGRIETVIDYAKAKEYFEGDNPAAWKGMLKPLLPQPSKVQITKHHAALPYNQIGSFMK 243 Query: 225 TMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPL 284 +R S + + +LT R E A W EID W IPA+RMK ++H VPL Sbjct: 244 ELRERSG--VSPRALEFAILTAARSGEIRGAEWSEIDLEGKTWTIPASRMKAAKEHRVPL 301 Query: 285 SDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAS 344 SD A+A+L+ + G F+FP+ K ++ + A LKR G L HG RS Sbjct: 302 SDAAVALLKALPRFKGIS-FVFPATRKGQ--LSDTALLAVLKRMGYTD-LTQHGFRSTFR 357 Query: 345 TALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 E +P +VIE ALAH ++ AY R +R +M W+ A Sbjct: 358 DWAGETTNYPREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDEWSGFCLA 409 >UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QAC1_PSYCK Length = 448 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 110/424 (25%), Positives = 195/424 (45%), Gaps = 17/424 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYD--GDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M RK +D I + KP+D Y + L L+++ + +K W +RYY P +++ Sbjct: 1 MERKAIS-SDRSISSHKPEDKKYFVAVKNHPKLFLMVRPTETKSWMYRYYPPSNPKQSII 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 S G YP++S + A ++ E + LL+K IDP+ H+++ ++ N+F A +++ Sbjct: 60 SIGIYPSISYARACEVWREYEDLLSKGIDPKIHREDIKKSFISKTKNSFNHFAWEYFDTL 119 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARG------ALETVR 172 + S + LE I IG+ I+EI + +++ + +QA+ + Sbjct: 120 EQSQKGNTLIRKKGRLEL-ICSYIGNEPISEIGSPRMLEVLLDIQAKSLNKDDKPTDKAE 178 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASI 231 R ++V +YA G + P+ I K + P++ P L +L+ + T Sbjct: 179 RCAGIASDVFVYANARGFCSSNPAALIKSQLAKSSYGHRPAVTKPKDLAKLLRAIETIEG 238 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPA----ARMKMNRDHTVPLSDG 287 +T L R + W ++D A W++ ++ M +D VPL Sbjct: 239 DPNTINSLRLLALLFVRNGDLRRMCWIDLDLEAGRWRLKPLKGQGKVNMVKDMVVPLPRQ 298 Query: 288 ALAILEMMKPLSGGREFIFPSRI-KPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTA 346 A+AIL + ++G +++F S+ K +Q ++ T N LK G + +HG R+ A T Sbjct: 299 AVAILREQQKINGHTKYVFFSQTAKKHQIISDATANKRLKDLGYKDIHCAHGFRATAKTI 358 Query: 347 LNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 L E +P ++E AL H K+ AY R +Y++ R MMQ WAD + A G Sbjct: 359 LQEQLKYPLVLVEMALGHTTKDPNGTAYGRFEYIDDRSDMMQKWADYLDALREGRDTAKF 418 Query: 406 LSKI 409 + Sbjct: 419 KADA 422 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 94/429 (21%), Positives = 168/429 (39%), Gaps = 34/429 (7%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ--SFGA 62 + D +IK+ + GDGL + +++ G W+ RY + +R + G Sbjct: 8 LNYMNDKQIKSFLKSKELGRKAVGDGLYIRVQTEGVAYWEVRY--SVNGKRRSMVPNGGV 65 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YPA+SL +A+ A+ K+L + IDP ++ Q + + T + + W+ + Sbjct: 66 YPAMSLVEAKAEAAKVKLLAKQGIDPLAERERQQEITIK----TVNDLFDDWYQCTAPRL 121 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + + R +DI PAIG + +T++ A + + V + ++ Sbjct: 122 K--HPEIPMRMYTKDIKPAIGQLKVTDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLF 179 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTAS--ISMSTRCLF 239 +A + P+ A +K + +++ +R + S Sbjct: 180 NHACKLDVASGNPAAAFNTADAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAV 239 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS 299 L R E A+W E DF+ W++P R K T+PLS+ + L+ +K ++ Sbjct: 240 ALLLCLGVRKGELIAAKWSEFDFDQQVWRMPKERSKTGVGITIPLSEFVIEWLKELKIIA 299 Query: 300 GGREFIFPSRI--KPNQPMNSQTVNAALKRAGLG------------------GVLVSHGL 339 G E++FP+R K + + + T+N AL + H L Sbjct: 300 CGSEYVFPARKASKRREYIANDTLNHALAKLFGQKHDSNKQPFENLLGKAGVEHFTVHDL 359 Query: 340 RSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 R T L PP + E L H K + YN DYLE+RR + A L+ + Sbjct: 360 RRTCRTLLASLKVPPHIAERCLNHKLK-GIEGTYNHHDYLEERREALDKLAALISPIINN 418 Query: 400 SIVLTHLSK 408 + K Sbjct: 419 QTNVISFIK 427 >UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurellaceae RepID=A6VNS1_ACTSZ Length = 427 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 133/421 (31%), Positives = 217/421 (51%), Gaps = 24/421 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA K L+ +I AAKPKD Y L DG GL L IK +G+K W F Y +P K+RT ++ Sbjct: 1 MALLVKHLSAAQINAAKPKDKIYYLSDGLGLRLAIKPNGTKTWLFNYTKPYIKKRTDKTI 60 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-- 118 G YP+VSL+DAR E + LLAK+IDP +++ E+ + + +NTF VA W + Sbjct: 61 GQYPSVSLADARAKAHEFRELLAKNIDPHQNEIEKEKQERLPMSNTFSHVANEWLVYREK 120 Query: 119 ----KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 + +E D R + D +GD S E+K + + + RG +++ Sbjct: 121 IGMERKDYSEKTKTDTIRRV-NDAIEILGDTSFKELKLQHGLALLDAHRTRGQYTEMKKR 179 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKP-QKKNMPSIRPDQLPQLMHTMRTASISM 233 + + YA+ G D +G+ P + K+ +I +LP+ + +R A+I Sbjct: 180 LFVLKSIAEYAERFGYWDRNEWRYLGEDLPSPDKNKHFAAIHYKELPEFLFELRKANIHY 239 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNAS-----EWKIPAAR-MKMNRDHTVPLSDG 287 S+ +W LL +TR +E A++ +I N + + + K RDH +PLS Sbjct: 240 SSLLAILWGLLNVTRASETVGAKFSDISENENLPGELVLTVQVNKGGKGARDHLIPLSRQ 299 Query: 288 ALAILEMMKPLSGGREFIFPSRIKPNQ--PMNSQTVNAALKRAG---LGGVLVSHGLRSI 342 A +L ++ + +++FP+ K + +N QT N +K G G++ +HG+R++ Sbjct: 300 AGKLLTFIRK-NSTSDYLFPAAYKRGRLVHINPQTPNDVIKSMGAGKYKGIMTNHGMRTL 358 Query: 343 ASTALN----EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 S+ N E G P++IE L+H++ ++VR AYNR++YL R +Q WAD V+ Sbjct: 359 FSSYCNDNRLELGLDPEIIEICLSHLNGDKVRNAYNRAEYLPYRLKTLQAWADYVELCAK 418 Query: 399 G 399 G Sbjct: 419 G 419 >UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD60_RHOVA Length = 427 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 102/416 (24%), Positives = 171/416 (41%), Gaps = 17/416 (4%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 TK LT ++ +P + ++ DG GL + + SG+K W RY + Q K + G Sbjct: 2 TKALTVRALENMRPGASRREIPDGIIQGLYFVHQPSGAKSWAVRYR--VGGQTRKLTLGT 59 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTF-LLVAERWWNVK-KT 120 YPA+ L AR L + + +A+ DP + +K + A F VA + K Sbjct: 60 YPAIGLKPARDLASTALAAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQ 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 E + + R L+R+I P + +I + + + + RG R + + Sbjct: 120 KNKETHIRETERILQREIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRK 179 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A + I P I +K + D++ L Sbjct: 180 MCAWAVDRSFIAVSPCHGIK--APASEKSRDRLLSEDEMRAAWLAFEA--TGWPFGPLAK 235 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 L T R E A+ RW EIDF W IPAAR K + H VPLS+ ALAIL+ + ++G Sbjct: 236 LLLATAQRRDEVADMRWSEIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAG 295 Query: 301 GREFIFPSRIKPNQPMNSQTVN----AALKRAGLG-GVLVSHGLRSIASTALNEEGFPPD 355 +++F + K S+ ++ G G H LR A++ + PP Sbjct: 296 VSDYVFTTTGKTPVSGFSRAKKAFDEQITRQLGEGIPGWTLHDLRRTAASGMTALKSPPH 355 Query: 356 VIEAALAHVDKN--EVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKI 409 V++A L H V Y R Y ++R + W + S + ++++++ Sbjct: 356 VVDAVLNHKSGTIKGVSAVYMRYGYAAEKRTALDAWGHFLTTIISSNTPCSNMAQL 411 >UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria RepID=D1D4Y4_NEIGO Length = 406 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 127/411 (30%), Positives = 202/411 (49%), Gaps = 27/411 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ PL+ ++K AKP+D Y+L DG GL L + +G + W+ + + ++ S Sbjct: 9 MAKIITPLSANQVKNAKPRDKLYKLSDGGGLALWVYPTGRRSWKLSFMQ--DGRQQTISL 66 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP SL++AR+ R E + A + + F VA W+ Sbjct: 67 GRYPDFSLAEAREWREEVRRKRAHGENVVNKKVRADFA--------FEKVARDWFVRWSK 118 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +E YA + R+ ER +FPAIG++ I +++ +V ++ ++ARG ++T+R+ + Sbjct: 119 GRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKM 178 Query: 181 VMIYAQNTGLIDAVPSVNI-GKAFEKPQKKNMPSIRPDQLPQLMHTMRTA---------- 229 V +A +G++D P I FE+ + KNM ++ P +LP+L+ + Sbjct: 179 VFAFAVGSGMMDINPVAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRV 238 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 I TR W LLT+TR EAA W E+D W+IPA R K R H VPLS Sbjct: 239 HIHPVTRFCIYWLLLTMTRIREAALMEWSELDGE--VWRIPAERKKERRGHDVPLSRAMR 296 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L+ + L+ F+F S +N ++ + A++R+GL +HGLRS+A T L E Sbjct: 297 WVLDQARGLNVNGRFVFESV-NFQGHINKESPHVAMRRSGLDT--TAHGLRSLARTYLRE 353 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 DV E LAH + AYNRS+ E+R+ + W + V Sbjct: 354 VLKVYNDVAEKLLAHSLGTRTQTAYNRSELWEERKDAPERWGNDVLRLADN 404 >UniRef50_B2TTV9 Site-specific recombinase, phage integrase family n=25 Tax=Proteobacteria RepID=B2TTV9_SHIB3 Length = 439 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 98/414 (23%), Positives = 161/414 (38%), Gaps = 20/414 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQ-LYDGDGLTLLIK-SSGSKLWQFRYYRPLTKQRTKQSF 60 RK LTD +I+A ++ DG+GL L + + + W+FRY L + Sbjct: 19 RKMPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFRYK--LAGKSRAMLI 76 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNS-----QEAKTNTFLLVAERWW 115 G+Y +SLS AR+ E +A D +++ + E +A ++ Sbjct: 77 GSYSELSLSKARETAKELSARVALGYDVAGEKQKHKTEALAKMEAEKNAMRVSELAAEYF 136 Query: 116 NVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 ++ + D + R +++DI P IG + + ++K + ++ + RGA + Sbjct: 137 E-RQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLKGIVDRGAPTIATDVL 195 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSIRPDQLPQLMHTMRTASI-SM 233 + + Y ++ P A + + D+L QL MRTA S Sbjct: 196 RWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRDELIQLFKAMRTAKGFSR 255 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 F L R E ARW+E D + + W +P R K +PL A+ L Sbjct: 256 QNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERSKNGDPIDIPLPSPAVEWLR 315 Query: 294 MMKPLSGGREFIFPSRIKPNQPMN-------SQTVNAALKRAGLGGVLVSHGLRSIASTA 346 + S ++ P+R N+ + + H R A T Sbjct: 316 ELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVRAEMPDVPNFTIHDFRRTARTH 375 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 L G P V E L H K V YNR Y ++R+ + WADL+ A +SG Sbjct: 376 LAALGVDPVVAERCLNHRIK-GVEGIYNRHQYFDERKAALAQWADLLVALESGK 428 >UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus RepID=C7JFF4_ACEP3 Length = 434 Score = 326 bits (837), Expect = 9e-88, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 195/408 (47%), Gaps = 22/408 (5%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M+R L+ ++ K D L DG GL L++ GS+LW+FR+ P+T +R + S Sbjct: 36 MSRLPPNQLSALKVSRHKSGD----LCDGGGLWLVVT-GGSRLWEFRFKSPVTGKRRQMS 90 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK 119 G+ ++SL+DAR+ A+ + + +DP ++++ + K TF VA ++ + Sbjct: 91 LGSAYSLSLADAREKAAKCRGMTENRLDPIIEREKEKAARELEKGLTFAEVAAQYIKAQT 150 Query: 120 TSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 + + + +W SL + +FP G+ S+ ++ ++ A++P+ ET R+ RI Sbjct: 151 PAWKDHRSPAVWTSSLTQHVFPIFGEKSVRDVDTQDVLTALRPIWTE-KTETSGRIRGRI 209 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAF--------EKPQKKNMPSIRPDQLPQLMHTMRTAS 230 ++ YA+ + + + ++ + + ++M +++ + Sbjct: 210 ERILDYARVQQWREGENPARWRGHLSVMLPAPSKITKVQHHKAAEWKDISEIMKALQSIN 269 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + LT R E A W EID + + W +PA +MK R+H VPLS A+ Sbjct: 270 GM--AAKAVRFCCLTAARSGEVRNAVWSEIDLSEALWVVPAEKMKAGREHRVPLSGDAVK 327 Query: 291 ILEMMKPLSGG--REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 +L+ + P + +FP K +P++ V+ AL A + HGLRS Sbjct: 328 VLQEVLPHRDAVSGDLLFPGA-KRGRPLSDVAVSKALHHAAGTKEVTVHGLRSTFRDWAG 386 Query: 349 EEGF-PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 E +V EAALAH K++V AY RSD L+ RRP+M+ WA + Sbjct: 387 ETKVCSREVAEAALAHAGKSKVEAAYFRSDLLDLRRPLMEEWAAQCRE 434 >UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUK8_9GAMM Length = 446 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 105/434 (24%), Positives = 182/434 (41%), Gaps = 31/434 (7%) Query: 10 DTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLS 69 D IKA KD Y + GL L I+ +G ++ RY P T +R + G+YPA SL+ Sbjct: 13 DKFIKAGVSKDTSYPIAGFKGLELRIRPNGKAEFRHRYTHPYTGKRPYMTLGSYPAFSLA 72 Query: 70 DARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADD 129 A++ ++ LLA+ IDP H++++ A NTF VA+ W N + + A Sbjct: 73 QAKQAYNDNMALLAQTIDPLTHKEQENAKQAYALDNTFEAVAKDWLNEQTNNPDYVRAKQ 132 Query: 130 IWRSLERDIFPAI---GDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + E + P I G + I I +++ ++ +Q + R+ + +A Sbjct: 133 TIVNWEYQLKPLIATFGKMPIGSITTPQVLRLLREIQKTHI-QKGNRVKAIAGRIFAHAV 191 Query: 187 NTGLIDAVPSVNI--GKAFEKPQKKNMPSI-RPDQLPQLMHTMRTA-SISMSTRCLFMWQ 242 GLI+ P + + +A + + + P++ P + +L+ + + + + + Sbjct: 192 INGLIEHNPVLQLAGARALKPTRSDHRPALITPAEFAELLKEIDNITNAKLFQKEILQLL 251 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDH----TVPLSDGALAILEMMKPL 298 LT R + +W +I A W + K D VPL+ +AILE M + Sbjct: 252 ALTFVRIGDVCAMKWADIHLEAKMWVFEPQKGKNRHDMVDCLVVPLAPQTIAILERMHEI 311 Query: 299 SGGREFIF-PSRIKPNQPMNSQTVNAALKR--------------AGLGGVLVSHGLRSIA 343 +GG E++F + K Q + Q +N L G V HG R+ A Sbjct: 312 TGGMEYVFYTGKRKKGQHADPQQINRILNDPSMNKAGMGKNYCGKGYLNVHSPHGFRASA 371 Query: 344 STALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG--- 399 T L E G+ + E + YNR + + +R MM WA+ + SG Sbjct: 372 KTLLMERLGYNHLITEIQSGRSMPDVYGNTYNRMEAINERIKMMNDWANYLDQLKSGKMD 431 Query: 400 SIVLTHLSKIRLVG 413 +I+ + + Sbjct: 432 NILFVDFKNAKAIN 445 >UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F7C9 Length = 374 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 111/394 (28%), Positives = 188/394 (47%), Gaps = 28/394 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T+I K + D DGL L + SGSK W++RY T T ++ G+YP +S Sbjct: 2 LTNTKIHRLKTPTKLERHLDSDGLYLEVTKSGSKNWRYRYKNH-TGSWTMKALGSYPKIS 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L AR L + E K +F A W V K + Sbjct: 61 LEKARALLDDL------------------EVVAEYKCISFKETASEWL-VYKGYTSYKNK 101 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 + R +E + P +G+++I IK ++ ++ ++A+G LE RR+ ++++ Y Sbjct: 102 HLVHRRIENYLLPKLGNMTIANIKPKDILPILKQIEAKGHLELARRVQNILSQIFKYGVQ 161 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSI-RPDQLPQLMHTMRTA-SISMSTRCLFMWQLLT 245 + P+ + ++P ++MP+I + +L+ T+ +A ++ S + Sbjct: 162 NLYCETNPAQPLQGCTKQPSVRHMPAIVEQSEFARLLATIDSASNLMPSVKLCLQLAPHV 221 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFI 305 R A+ + IDF+ W IP KM R+H +PL++ + +L+ + G E++ Sbjct: 222 FLRSQSIRMAKPEHIDFDRKLWVIPKD--KMGREHWIPLTEPVIEMLQTAIAQTNG-EYL 278 Query: 306 FPSRIKPNQPMNSQTVNAALKRAGLGGV-LVSHGLRSIASTALNEE-GFPPDVIEAALAH 363 F + IKPN P++ T+N AL+ G+ V HG RS ST E P D+IE L H Sbjct: 279 F-NGIKPNSPLSENTLNHALRSLGVDKQTHVFHGFRSSFSTLAREHCRLPGDLIELQLGH 337 Query: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAAD 397 ++ N+V+ AY+RS LE+RR +M W+ + Sbjct: 338 IEGNQVKAAYDRSQRLEERRELMDKWSKYLAELA 371 >UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12EX0_POLSJ Length = 410 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 101/420 (24%), Positives = 177/420 (42%), Gaps = 23/420 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M +K L ++ + Y + GL L +K SG++ W R + R Sbjct: 1 MPKKAVELGALQVSRLT-QPGRYAVGGVAGLHLWVKPSGNRSWILR--VLVGAIRKDIGL 57 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVR--NSQEAKTNTFLLVAERWWNVK 118 G YP V+L+ AR ++ + + ++P E +++ + +AK TF + + + Sbjct: 58 GGYPDVTLAGARDAARRARDQILQGVNPIEQRRQAKALLMADQAKAKTFKDCSAAFIEDR 117 Query: 119 KTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 W +LE FP IG + + +I +++ ++P+ ET R+ R Sbjct: 118 GDEWRNPKHRQQWHNTLETYAFPFIGGLFVRDISLAHVLEVLRPIWKT-KTETAARVRGR 176 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTA 229 I V+ +A G ++ + ++ ++ D L + +R Sbjct: 177 IETVLDWAAVRGYRAGDNPARWKGHLDQVLPKPSKVKKVEHHSAVGLDDLAGFIAAVRRV 236 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + +LT R E A W E D A++W +P RMK +H VPLS A+ Sbjct: 237 PGM--GARALEFAILTAARSGEVRGALWSEFDLKAAQWIVPPERMKAGEEHRVPLSKQAI 294 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 +L+ + G + +F Q ++ T++A ++R + V HG RS +E Sbjct: 295 KLLKSIPRFEG-SDVVFCGI--KGQVLSDMTLSAVMRRMEVN--AVPHGFRSTFRDWASE 349 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 FP ++ E ALAH +++V AY R D L +R MMQ WAD + + V+ K Sbjct: 350 RTNFPRELAEKALAHTIESKVEAAYRRGDLLAKRMQMMQAWADFCETPVNKGTVVPLKRK 409 >UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ50_PELPD Length = 427 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 99/424 (23%), Positives = 168/424 (39%), Gaps = 40/424 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA T+ TD I + KP D +Y +G G ++ + SG K W F Y K+ + Sbjct: 1 MATGTR-FTDKFIMSLKPADKEYWKREGQGFSIRVYPSGEKAWYFIYTFDGRKKYMRLKD 59 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G YP VSL+DAR+ +KV L IDP ++ + + T + + + Sbjct: 60 GGYPDVSLADAREAFDIAKVKLKNGIDPLAELEQARLDRK--HTPFVKEFVDEFIRIYCK 117 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +I R+L+ +I P G +T+IK LV + ++ RGA R+ + Sbjct: 118 EN-NRGWKEIERALKSEIVPRWGKRKLTDIKRRDLVLVLDEIKERGAPVMANRILAYTRK 176 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + +A ++ P + + + + + ++ H + +S S + Sbjct: 177 MFSWALERAALEVNPFLMMSR--PNDETSRERVLSEKEIKTFWHNLDECKMSDSIKRALK 234 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 L+T RP E +EID W+IPAAR K + H V L+ A ++ Sbjct: 235 LILVTGQRPGEIIGMHRNEIDGE--WWEIPAARSKNKQAHRVFLTITAKQLI------GD 286 Query: 301 GREFIFPSRI----------KPNQPMNSQTV-------------NAALKRAGLGGVLVSH 337 FIF S KP +P +T+ + + R + H Sbjct: 287 ASGFIFESPANPAKPDETPPKPAKPYEVRTMTHDIKQNLPHTPHSKVIDRLKV-PHFTPH 345 Query: 338 GLRSIASTALNEEGFPPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 LR A+T E D+I+ H+ K V YNR Y +++ ++ W + + Sbjct: 346 DLRRTAATRWAEMEITGDMIDRLQNHITRQKQGVGHVYNRYSYAREKQQALEAWEQKLNS 405 Query: 396 ADSG 399 + Sbjct: 406 IITS 409 >UniRef50_B5J5X2 Site-specific recombinase, phage integrase family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J5X2_9RHOB Length = 383 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 112/374 (29%), Positives = 179/374 (47%), Gaps = 10/374 (2%) Query: 32 TLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDP--- 88 L + SG K+++ Y + + G YPA SL+DAR + ++ L DP Sbjct: 2 FLEVLPSGRKVFRLAYRLAGN--QRTKLIGDYPATSLADARLKASAFRLDLNS-SDPEIV 58 Query: 89 -QEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISI 147 + Q +++ +T T+ VA+ + +++ S A+G+ + Sbjct: 59 EVATRPRQTVTTKKRQTTTWKEVADGYLMMRQQSNPAPKTLRKLNYQIGVTVDALGNPRV 118 Query: 148 TEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQ 207 EI A ++ V P+ + G +ET + R +++ YA GL+ P+ A K + Sbjct: 119 DEITAQDILDVVNPIASSGRVETAHEIRARFSQIFRYAGARGLVTHDPAAFTIDAMIKRR 178 Query: 208 KKNMPSIR-PDQLPQLMHTMRTAS-ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNAS 265 + I P + +L+H + + + M R E RWDEID+++ Sbjct: 179 RGEFAGITDPAAVGKLLHAIESYREANPIVGAALMLSAYLFPRNTELRGMRWDEIDWDSL 238 Query: 266 EWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAAL 325 W++P RMKMNRDH VPL A+ +L ++ G E + PS P + ++ T NAAL Sbjct: 239 RWEVPGQRMKMNRDHIVPLPSQAIDLLRFLQKYDFGSELVLPSPRDPKRMVSDMTFNAAL 298 Query: 326 KRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRP 384 +R G V HG R+ AST LNE G+ D IE LAHV N+VR +YN++ YL+ R Sbjct: 299 RRMGFKSDRHVHHGFRTTASTNLNEMGWNYDWIERQLAHVPANKVRSSYNKAQYLDGRTE 358 Query: 385 MMQWWADLVKAADS 398 MM+ +AD + A Sbjct: 359 MMRAYADWLDARRQ 372 >UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter RepID=A7ZG37_CAMC1 Length = 406 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 120/417 (28%), Positives = 201/417 (48%), Gaps = 31/417 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDG---LTLLIKSS---GSKLWQFRYYRPLTKQ 54 MA T D +K K+ + + DG L +L + +K + F+Y K+ Sbjct: 1 MASFTN---DLALKKFTLKNKNREWVKDDGVKFLYVLAYKTQKETTKTFYFKYQESNQKR 57 Query: 55 R-TKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAER 113 + G YP+++L++AR E + L + D + + KT TF VA+ Sbjct: 58 TTKQIKIGKYPSITLAEARAKALELERLRDRGED-------LQTATAKQKTITFKDVADE 110 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA-----L 168 W + K+ S + +E+++ P +GD +ITE+K A++ +QAR A Sbjct: 111 WID-KEQSKELIAFNKQIGRIEKNLIPYLGDKAITELKRRDYAHAIEQIQAREAKRGITH 169 Query: 169 ETVRRLCQRINEVMIYAQNTGLIDAVPSVNI--GKAFEKPQKKNMPSIR-PDQLPQLMHT 225 ET R + + +++ A N G I+ P+ +I AF+ + +I P +L +L+ Sbjct: 170 ETSLRTFRLLRKILDLAVNKGYIEHNPTRDIIFNDAFKTSTNNHFKAITEPKKLKELLGA 229 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 M+ S T+ ++ + T R A +W +DF + PA MK+ +P+S Sbjct: 230 MQDYQGSFYTQQALIFGVHTFLRSANVRGLKWQYVDFENNLITFPAEAMKLREVFYMPMS 289 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST 345 +L+ M +F+FPS I +P++ T+N A+KR G G +V HGLR+ AST Sbjct: 290 KQVKKLLKTMLE-HKRGDFVFPSGISATRPLSDSTLNQAIKRLGFGDEMVFHGLRTTAST 348 Query: 346 ALNE----EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 LNE GF DVIE L H +++ V+ Y+RS L++R +MQWW+D + + Sbjct: 349 LLNENIKNHGFSSDVIELCLDHKERSSVKAIYDRSQRLDERAKLMQWWSDYLDSLVK 405 >UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KUI7_METC4 Length = 414 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 94/419 (22%), Positives = 156/419 (37%), Gaps = 29/419 (6%) Query: 8 LTDTEIKAAKP-KDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 LT ++ AKP ++ D GL L+++ +G K W RY + K + G YP Sbjct: 4 LTARAVELAKPDPGKRREVPDAALPGLYLVVQPAGGKSWAVRYR--AAGKPRKLTLGPYP 61 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 + L+DAR+ + +A+ DP ++ +T F VA + Sbjct: 62 RLGLADAREAARTALHAVAEGRDPAGEKQAARVEVAAVQTMRFGAVAADYIERYAKP-RN 120 Query: 125 DYADDIWRSLER--DIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 + L R D + + I + A+ V ARGA RL + Sbjct: 121 RSWRETESFLTRTLDATDKWQEKDVRAIGRKDVRDALDAVVARGASIHANRLFAALRRFF 180 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 + G++DA P + P+ + +L + + + Sbjct: 181 AWTVERGILDASPMAGLKP--PSPEISRDRVLTDAELVAVWKA--AGEVGYPFGPVVQLL 236 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT R +E EA W E D + + W IP R K +R H VPL+ A+ IL + + Sbjct: 237 ILTGQRRSEVVEAEWREFDLDGATWTIPRERAKNDRAHVVPLAPQAVKILRCIPCVGTRS 296 Query: 303 EFIFPSRIKPNQPMNSQTVNAALKRA----------GLG-GVLVSHGLRSIASTALNEEG 351 +F + + V+ A R G+ H LR ++ G Sbjct: 297 RLLFTTTGETAF----SGVSKATDRLQGLSAKHLPEGIEVEPWRLHDLRRTFASGCARLG 352 Query: 352 FPPDVIEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 V+E AL HV + + Y R Y ++RR M+ WA + G+ + L + Sbjct: 353 VAVHVVEKALNHVSGTHSGIVGVYQRHSYGDERRCAMELWAAHLDGLVGGAAKVVKLER 411 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 323 bits (828), Expect = 8e-87, Method: Composition-based stats. Identities = 98/425 (23%), Positives = 177/425 (41%), Gaps = 36/425 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 M KPLT I+A K + ++ DG GL L+++++G K W RY + K Sbjct: 1 MP-AAKPLTVKSIEAIKAGSSRREIPDGALQGLYLIVQTTGVKSWAVRYRHA--GKPRKM 57 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 + G +PA+SLSDAR+ ++ ++++ DP + EQ L+ E Sbjct: 58 TLGGFPAISLSDAREEARKALRMVSEGRDPATEKAEQEPKRPAHMDLMPALLDEFVTRHV 117 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 Y + R +E+++ P + + ++K + + RG+ R+ + Sbjct: 118 AVKNRPSYVRESKRIVEKNLKPKWKQKLVKTVTKRDVLKLLDEIVDRGSPIMANRVRALL 177 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238 ++ +A ++DA P V+I +K + +++ L + ++ + Sbjct: 178 SKFFAWAMERDIVDASPVVSIK--APSEEKTRDRILTDEEIRFLW--LAAEKLAYPFGPV 233 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNAS--EWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 LLT R E ++A WDE++ + W I R K ++H VPL+ AL I+E + Sbjct: 234 VKLLLLTAQRRTEVSDALWDELELEGNNQLWVISVDRAKNKKEHFVPLTASALEIIEGLP 293 Query: 297 PLSGGRE------FIFPSRIKP--------NQPMNSQTVNAALKRAGLGGV--------- 333 + + ++F + K ++ + + A K A G Sbjct: 294 KIKPAEDEKAKPIYLFTTTGKTPVSGFSKAKTQLDGEMLAIARKEAEERGEDPEGISIEP 353 Query: 334 LVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN--EVRRAYNRSDYLEQRRPMMQWWAD 391 H LR A++ + P ++EA L H + V YNR DY E++R + WAD Sbjct: 354 WTYHDLRRTAASGMARLSVPVHIVEAVLNHRSGSIKGVAAVYNRYDYAEEKRAALTAWAD 413 Query: 392 LVKAA 396 V Sbjct: 414 EVLRL 418 >UniRef50_B3AX37 Site-specific recombinase, phage integrase family n=7 Tax=Enterobacteriaceae RepID=B3AX37_ECO57 Length = 440 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 90/428 (21%), Positives = 163/428 (38%), Gaps = 25/428 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQ-LYDGDGLTLLIKSSGSK-LWQFRYYRPLTKQRTKQ 58 M LTD +I+A D + DG+GL L + + W+FRY ++ Sbjct: 21 MP----KLTDIQIRAWIKADERFDGKADGNGLYLCYPKNYTMPFWRFRYK--FAGKQRAM 74 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNS-----QEAKTNTFLLVAER 113 G+Y +SLS AR+ E +A D ++E+ + E +A Sbjct: 75 VIGSYAELSLSRARETAKELSARVALGYDVAAEKQERKAEALAKMEAEKNAIRVSELAAE 134 Query: 114 WWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 ++ ++ + D + R +++DI P IG + ++K + + ++ + RGA Sbjct: 135 YFE-RQILPRWKHPDILRRRIDKDINPRIGHMKAEDVKPRHIDEMLKAIVDRGAPTIATD 193 Query: 174 LCQRINEVMIYAQNTGLIDAVPSVNIG-KAFEKPQKKNMPSIRPDQLPQLMHTMRTASI- 231 + + + Y +++ P + + ++L + MRTA Sbjct: 194 VLRWTRRIFDYGIKRHVLEINPCSAFEVSDAGGKESSRDRWLTREELIRFFQAMRTAKGF 253 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 S F L R E ARW+E D + + W +P R K +PL + Sbjct: 254 SRQNELTFKLLLALCVRKMELCAARWEEFDLDNAVWHLPEERSKNGDPIDIPLVPPVIEW 313 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMN-------SQTVNAALKRAGLGGVLVSHGLRSIAS 344 L+ ++ LS ++ P+R ++ + + H R A Sbjct: 314 LKELRVLSCNSAWVLPARKMQHRMIPHIQESTLPVALAKVRAEMPEVPDFTIHDFRRTAR 373 Query: 345 TALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS-IVL 403 T L G P V E L H K V YNR Y ++R + W +L+ + + G + Sbjct: 374 THLAALGVDPVVAERCLNHRIK-GVEGIYNRYQYFDERTSALAKWTNLLVSLERGERYNV 432 Query: 404 THLSKIRL 411 T + + + Sbjct: 433 TPIRRAKA 440 >UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A1U0R6_MARAV Length = 432 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 110/441 (24%), Positives = 178/441 (40%), Gaps = 43/441 (9%) Query: 1 MARKTKPLTDTEIKAAK---------PKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPL 51 M + K L+ E+K + Y + GL L I SGS+ W R + Sbjct: 1 MPKIAKELSALEVKRLTCRIDPETGEATEVRYPVGGVSGLLLRITPSGSRQWILR--AKV 58 Query: 52 TKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRN--SQEAKTNTFLL 109 +R G YP +SL+ AR E K + IDP E ++ R +++ T TF Sbjct: 59 GNRRPDMGLGPYPEISLAQARDKAREMKEKIRSGIDPLEEKRTLKRALLAEQISTLTFQK 118 Query: 110 VAERWWNVKKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGAL 168 E++ +K + W SL P +G + + EI + + + P+ Sbjct: 119 AMEKYIKMKAKEFRNPRQEKQWTNSLNTYAIPHLGKLPVREIDLPHIKQVLDPIWET-KT 177 Query: 169 ETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF--------EKPQKKNMPSIRPDQLP 220 ET R+ RI ++ + G A + ++ + ++ D +P Sbjct: 178 ETANRVRARIENILGWCAIHGYRSAENPARWQGYLDEVYPSPEKIKKRGHFAALPVDDMP 237 Query: 221 QLMHTMRTASISMSTRCLFMWQLLTITRPAEA--------AEARWDEIDFNASEWKIPAA 272 + M ++ + + + +LT +R E A W EID W +PA Sbjct: 238 EFMRDLKKRTG--TAARALEFLILTASRTNEVIGDKRIGKAGVTWQEIDLARKVWTVPAD 295 Query: 273 RMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG 332 RMK + H VPL+D A+ +L+ M S + IFP ++ + A LKR Sbjct: 296 RMKSEKIHRVPLTDSAIELLKGMGEGSPE-DLIFPGP--KGGIPSNNFLTALLKRM--ER 350 Query: 333 VLVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 + +HG RS E + +V E ALAHV+ + R AY RS+ +++RR MM W Sbjct: 351 PITAHGFRSTFKDWARERTAYADEVSELALAHVNSDATRAAYARSELIDKRRLMMADWEQ 410 Query: 392 LV----KAADSGSIVLTHLSK 408 +SG +V K Sbjct: 411 FCMHGETKKESGKVVAIGEGK 431 >UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SXW8_POLSQ Length = 434 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 107/417 (25%), Positives = 184/417 (44%), Gaps = 32/417 (7%) Query: 21 ADYQLYD--GDGLTLLIKS---SGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLR 75 + D GL + + + + W FRY P +R + G+ A SL+DAR+ Sbjct: 19 SPGYHADPESKGLYIQVSKGVNNFKRSWIFRYTSPTLFKRREMGLGSLEARSLADARRKT 78 Query: 76 AESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERWWNVKKTSVTEDYADDIWR- 132 E + L+ IDP E + + A N TF AER +K D WR Sbjct: 79 LELRQLVMDGIDPTEDRCKAKSKRITAINNGITFKEAAERCIEGRKAEWKSSKHADQWRN 138 Query: 133 SLERDIFPAIGDISITEIKAHTLVKAVQP-VQARGAL----------ETVRRLCQRINEV 181 ++ +P IG++ + +I + K ++ ++ + ET R+ QRI + Sbjct: 139 TISTFAYPEIGELRVDQINTSHIAKLLEQEIKNKNGTVEGTFWNVRTETATRVRQRIEVI 198 Query: 182 MIYAQNTGLIDAVPSVNIGKAF--------EKPQKKNMPSIRPDQLPQLMHTMRTASISM 233 + + I + A + +K + P++ ++ + + +R + Sbjct: 199 FDWCKAHEYIKGDNPARLKGALGHLLPKAKKIQKKSHHPALPFQRIGEFVKDLREHNG-- 256 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 + +LT TR +E EA+W E + W IPAARMK ++H VPL+ A+ ILE Sbjct: 257 YSALALELLILTATRTSEVIEAKWTEFNLETKVWVIPAARMKAGKEHRVPLNTRAMEILE 316 Query: 294 MMKPLSGGREFIFPSR-IKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EG 351 +K +S ++FP K +++ + + +++ V HG RS E Sbjct: 317 HLKTISVSS-YLFPGSLHKEESHLSNMALLSMMRKMPKYSGYVPHGFRSTFRDWAAETTD 375 Query: 352 FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 +P + +E ALAH KN+ AY R D LE+R +M+ W +V AA + + L+ + K Sbjct: 376 YPNETVELALAHTIKNKAEAAYRRQDQLEKRTVLMEEWGAIVNAAINKNENLSTMIK 432 >UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UI65_ECO1A Length = 352 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 96/277 (34%), Positives = 145/277 (52%), Gaps = 2/277 (0%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 L +I AKPK+ Y+L DG GL LL+K +G K W+ +Y + + + G YP Sbjct: 1 MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYR--VAGKEKLLALGVYPE 58 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 V+L+DAR R ++K +A IDP E ++E+ + NTF +A W + K + Sbjct: 59 VTLADARAKREDAKRGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAG 118 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 YA DI + +D+FP IG I EIK L+ ++ ++ RGA E +++ QR EV YA Sbjct: 119 YASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYA 178 Query: 186 QNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLT 245 TG + P+ ++ A + + + P + +LP + + S S ++T Sbjct: 179 IVTGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIIT 238 Query: 246 ITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTV 282 R E A WDEIDFN + W+IPA+RMKM R H V Sbjct: 239 GLRTGELRGALWDEIDFNKAIWEIPASRMKMRRPHIV 275 >UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCI3_9SPHN Length = 325 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 3/324 (0%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L+ IKAAK +D Y+L D DGL L + +G++ W+ Y ++ +FG +PAV Sbjct: 3 LSAVAIKAAKSRDKPYKLADRDGLYLEVSPTGARSWRMNYRYL--GKQKTLTFGRWPAVG 60 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L+DARK ++ +LA+ DP E K + + A ++F VAE + + Sbjct: 61 LADARKKCDAAREVLARGDDPGEQAKLERIAASVASASSFEAVAEEYLAKIEKEGRSSVT 120 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 R L I +IG I+ I A L+ ++ ++ +G ET RRL +++ YA Sbjct: 121 MKKKRWLIGFIDKSIGKRPISAISAPELLLTLRKMEKKGKYETARRLRSTCSQIFRYAIA 180 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPD-QLPQLMHTMRTASISMSTRCLFMWQLLTI 246 TG + +V++ A P+ + P+I ++ L+ ++ + +T+ Sbjct: 181 TGRAERDVTVDLRGALIVPKAVHRPAITDASKVGGLLRSIESFDGHPTTQIALKLVPHVF 240 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIF 306 RP E A W E D +A+ W IPA + KM R H +PLS L I+ ++ + F+F Sbjct: 241 VRPGELRHAEWTEFDLDANVWTIPAEKTKMRRPHAIPLSRQTLEIIASIEHDADYSRFLF 300 Query: 307 PSRIKPNQPMNSQTVNAALKRAGL 330 PS +PM+ T+NAAL+R G Sbjct: 301 PSLRSVQRPMSENTINAALRRMGY 324 >UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UGI0_METS4 Length = 413 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 96/415 (23%), Positives = 158/415 (38%), Gaps = 34/415 (8%) Query: 8 LTDTEIKAAKP-KDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 LT ++ KP + ++ D GL L+++ SG K W RY + +Q K + G YP Sbjct: 2 LTVQSVERYKPNPERRLEIPDATLPGLYLIVQPSGKKSWAIRYR--INRQPRKFTIGPYP 59 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 LS AR+ ++ + A+ +DP +K + EAK +VA K Sbjct: 60 LFDLSAARERARQALQMAARGLDPYREKKAAEAAAIEAKDQVSRVVATYVERHLKVKGKP 119 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 YA+ L + P G I +I ++ V + RG R+ + + Sbjct: 120 GYAEQAEGLLRNHVLPHWGHRRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNF 179 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 A LI + P + + P + ++ + I + LL Sbjct: 180 ALGRDLITSTPFLGLKPPLPNPS--RDRVLSDAEVR--WAWLCAERIGFPFGPMVQLLLL 235 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 T TR E E W E + + W IP AR K + +H VPL A+ IL + ++G + Sbjct: 236 TGTRRNETGEMVWSE--LDGTVWTIPGARTKNSLEHVVPLPPAAIEILAAVPRIAGRPGY 293 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGL-------------------GGVLVSHGLRSIAST 345 +F + P + + A + H LR A++ Sbjct: 294 VFT--RNGSTPASDLSAGKRRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAAS 351 Query: 346 ALNEEGFPPDVIEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 + G P V+EA L H + V YNR YL ++R ++ W V + + Sbjct: 352 GMARLGTDPHVVEAVLNHRSGTISGVAAVYNRYAYLNEKRAALETWGKHVTSLAN 406 >UniRef50_D1Y3S1 Site-specific recombinase, phage integrase family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S1_9BACT Length = 433 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 133/428 (31%), Positives = 209/428 (48%), Gaps = 36/428 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 L T I+ + KDA Y L DG GL L + +G K+W +RY ++ K + G YPA+ Sbjct: 3 LNITAIERSTGKDAPYLLNDGGGLYLKVCPNGRKVWLYRYRDE-GERERKVTLGEYPALD 61 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV-KKTSVTEDY 126 ++ AR+ + ++ + + P Q+ TF VA RW+ KK + Y Sbjct: 62 MAAARERKEATRARILRGEAP-----------QDTALLTFEQVARRWYEKQKKRGLAPRY 110 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + I + LE + P +G + +I+ LV V+ V RG +E+ R+ ++++ YA+ Sbjct: 111 LETIRQRLECYLIPPLGARPLEQIQRAELVAVVEGVAKRGIVESSHRVGVILSQIYQYAE 170 Query: 187 NTGLID---AVPSVNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISMSTRCLFMWQ 242 + G++ A+ + ++ + K + ++ ++ P+ + Q+M +R +R + Sbjct: 171 DAGILPGGGALAAASLSRVLPKTKTEHFATVSKPEDVRQVMECIRDYRGFAVSR-CLEFI 229 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LT R EA ARW EID A W IPA MK H VPLS ALA+LE MKPLS Sbjct: 230 ALTFVRSGEARRARWREIDLEARLWTIPAEHMKRRIAHKVPLSRQALALLEEMKPLSCSG 289 Query: 303 E--FIF----PSRIKPNQPMNSQTVNA----ALKR------AGLG--GVLVSHGLRSIAS 344 IF R + + ++ ALKR AGL + HGLRS+AS Sbjct: 290 PESLIFVSGLTGRSSSSGILTDMSLLRPFREALKRNPERAAAGLKPFPKMTVHGLRSMAS 349 Query: 345 TALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT 404 T LNEE ++IE L+H+D + +R YN S+ L+ RR +MQ+WAD + + + Sbjct: 350 TILNEERQGGELIEIQLSHLDADRIRLIYNNSELLDDRRALMQFWADWLDNCTRNAPESS 409 Query: 405 HLSKIRLV 412 V Sbjct: 410 APKSAERV 417 >UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=Q8DF52_VIBVU Length = 452 Score = 320 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 153/440 (34%), Positives = 231/440 (52%), Gaps = 51/440 (11%) Query: 1 MARKTKPLT-DTEIKAAKPKDADYQLYDGDGLTLLIK----SSGSKLWQFRYYRPLTKQR 55 MAR+ T D + + + + DGD L L ++ K WQF Y+ PLTK+R Sbjct: 2 MARRNPDKTYDKA--SLQDGKKEQLISDGDNLYLRLRLGKNKKTKKSWQFNYHHPLTKKR 59 Query: 56 TKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW 115 K + G YPA++L DARK LL K+IDPQE+++ N+ + F VAE+W+ Sbjct: 60 IKLTIGNYPALTLKDARKKAENYLELLEKNIDPQEYERTGGINAIDPDKRLFKDVAEKWF 119 Query: 116 NVK--------------------KTSVTED--------------YADDIWRSLERDIFPA 141 K K E Y+ DI L+ I PA Sbjct: 120 EEKILAEDKKKRQEKIDDANKRAKDEGREKASEQELEAVLRDIRYSKDIRGRLDNHILPA 179 Query: 142 IGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGK 201 +G+I IT+++ + +A+QP A+G + ++CQ + VM YA+ G + + P ++ + Sbjct: 180 LGNIPITKMETYLAQEALQPSYAKGIN--MDKICQISSRVMGYAKKLGYMKSNPLSDLSE 237 Query: 202 AFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEID 261 F +K+ PSI+P+ L +LM M +I+ TR F Q+ T+ R +E A+ RWDE+D Sbjct: 238 VFVNKRKQKQPSIKPEGLSELMKAMGERNITKVTRAGFEMQMHTLARASEIAKMRWDEVD 297 Query: 262 FNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPS-RIKPNQPMNSQT 320 F + KIP+ RMK +H +PL+ +LE +KP S E++FP+ MN Q+ Sbjct: 298 FENNLIKIPSYRMKRLNEHFIPLTKYTRGLLEYLKPFSSHLEYVFPADPRSSRPHMNQQS 357 Query: 321 VNAALKRAGLGGVLVSHGLRSIASTALNEE-------GFPPDVIEAALAHVDKNEVRRAY 373 +NA LKRAG G LVSHG R + ST LN+ F DVIEA LAH D +++R Y Sbjct: 358 INANLKRAGFKGELVSHGFRHMGSTFLNDSKKYGANEKFDADVIEACLAHCDNDKIREIY 417 Query: 374 NRSDYLEQRRPMMQWWADLV 393 N ++Y+E RR ++++W D + Sbjct: 418 NSAEYIEMRREILEFWGDYI 437 >UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=A4F5J8_9BACT Length = 390 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 117/390 (30%), Positives = 188/390 (48%), Gaps = 23/390 (5%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA LTD IKA KP + Y++ D DGL L + SG+ ++F Y ++ + Sbjct: 1 MA-----LTDKAIKALKPGEKTYKVADRDGLYLSVAPSGTMSFRFNYRY--NNRQQTVTL 53 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G Y ++L+ AR+ ++K LA I P + ++E E N+F + +++ + Sbjct: 54 GKYGEITLAQAREKLLKAKADLAAGISPAKKKQEIKNTLAE---NSFSVWLDKYTE--EC 108 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 V + +++ + PA+G +S+ EI + + + + + A T I Sbjct: 109 GVADSTKKMRGYAIDNYLRPALGKMSLFEITENEVRALAEDLVKQQAPSTALLCRMIIKN 168 Query: 181 VMIYAQNTGLID-AVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLF 239 V +A G P+ + + K ++ P ++ +++ + +S +S++ F Sbjct: 169 VYTFASMHGGPKLKSPTDFVRPSSIHTFKSRTRAMSPREIGYVLNGIEQSSSDISSKSAF 228 Query: 240 MWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL- 298 LLT+ R +E W EID+N W+IPA RMK R H V LS A IL ++ L Sbjct: 229 KLILLTLLRKSEVINGVWSEIDWNEKTWRIPAERMKTKRPHNVYLSKQAFDILVCLRTLS 288 Query: 299 SGGREFIFPSRIKPNQPMNSQTVNAAL-------KRAGLG-GVLVSHGLRSIASTALNEE 350 + +FIFP++ N+PM + T N L K+AG+ H LR AST LNE Sbjct: 289 TCKSDFIFPAKYGLNKPMATSTPNRLLELGMANAKKAGIEIEPCTIHDLRRTASTLLNEA 348 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLE 380 F D IEA+LAHV + VR YN +DY E Sbjct: 349 EFNSDWIEASLAHV-ASGVRAVYNVADYRE 377 >UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ERI0_METSB Length = 400 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 88/405 (21%), Positives = 163/405 (40%), Gaps = 16/405 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTKQ 58 MA+ LT I A KP+ ++ DG GL +++ SG+K W Y + K Sbjct: 1 MAK---NLTIKGIAALKPQAKRCEVPDGHTRGLYFVVQPSGAKSWA--YRFSFEGKPKKL 55 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 + G+YPA+ LS AR + S +A +P +K + +++ + V + VK Sbjct: 56 TIGSYPAIDLSRARSIALASATKVANGRNPAAEKKVEREKARKPSDLDLVDVVVAQFVVK 115 Query: 119 --KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + A ++ R L+R+I +TEI + ++ + R A R+ + Sbjct: 116 HVEPKTRPQSAKEMKRILKREILSRWSGRRLTEITRSDIRDLLEAIADR-APIMANRVFE 174 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 I+ ++ ++ + ++ A P + K P K+ + +L + + Sbjct: 175 VISSLINWSISMEMLSASPIAGLRK--PSPAKRRDRILSEKELTDVWQA--SERAGWPYG 230 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMK 296 + +L+ R +E ++ W EIDF W +PA R K + H +PLS + +L + Sbjct: 231 SMIKVLILSGQRRSEVSDMTWSEIDFEERSWTLPAVRTKNGKGHIIPLSPTIIDVLLTLP 290 Query: 297 PLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 + F+F + ++ A + H LR +T + V Sbjct: 291 RIGSESGFVFTTNGFSPIRNFARRKKALMMSCQSENNWTLHDLRRTFATGMARLKVELPV 350 Query: 357 IEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 +E L H V+ Y + D+ ++R M WA V + Sbjct: 351 VEKLLNHSSGTFGGVQGVYQQYDFQSEKREAMNLWASYVNKITNK 395 >UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepID=Q21D10_RHOPB Length = 429 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 185/437 (42%), Gaps = 42/437 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR LT ++ DG GL L I GSK W FRY L + Sbjct: 1 MARGFGKLTVKTVEHL---SRRGMHADGGGLYLQIAEGGSKSWLFRYK--LHGRTHWHGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERWWNVK 118 G+ V L +AR+ ++ + DP + +++ ++ TF A+R+ Sbjct: 56 GSLRDVGLEEAREKATGARKVRRNGGDPIQAKRQAEAAARIEAAKAITFGEAAKRFIKAN 115 Query: 119 KTSVTEDYADDIW-----------RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 + D W + + D I D+ I I +++ ++P+ A Sbjct: 116 RAGWKNAKHADQWVMTLLGVDQKGKPSKNDYCKTIRDLPIGAIDTTLVLRIIEPIWA-SK 174 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQL 219 ET R+ RI +V+ A+ G + + + +N P++ QL Sbjct: 175 TETATRIRSRIEQVIDAAKAKGEFNGENPARWKGHLDNLLPATSKVRKVRNHPALPYRQL 234 Query: 220 PQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD 279 P M +R + +Q+LT RP A A+WD+ID S W IPAA MK + + Sbjct: 235 PDFMRKLRERDG--AAAAALEFQILTAVRPGNAVAAKWDQIDRQTSVWTIPAALMKSDAE 292 Query: 280 HTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA----------G 329 H VPLS ALA+L+ M+ E+IFP+ +P++ ++ A + R Sbjct: 293 HRVPLSKAALAVLDRMEATKDDSEYIFPNT--KGKPLSDASMAAVIDRMNELERRWIDPK 350 Query: 330 LGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWW 389 L +V HG RS E G+ V EAALAH +EV AY R+ +L+ R MM+ W Sbjct: 351 LDREIVPHGFRSSFRDWAAEHGYDDPVAEAALAHKVSDEVVAAYRRTTFLDLRNRMMEDW 410 Query: 390 ADLVKA-ADSGSIVLTH 405 AD + SG V+ Sbjct: 411 ADYCARPSSSGDTVVAF 427 >UniRef50_C6E138 Integrase family protein n=1 Tax=Geobacter sp. M21 RepID=C6E138_GEOSM Length = 433 Score = 317 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 96/443 (21%), Positives = 179/443 (40%), Gaps = 51/443 (11%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M+R TDT I+ KP +Y+ +G+G T+ + SG K W + Y + +R Sbjct: 1 MSRARIVFTDTMIRKLKPDTNEYRKSEGNGFTIRVMPSGFKSWLYLY--AINGKRRCMGL 58 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-K 119 G YP V+L AR +K ++ +DP + ++E+ ++A T + + + K Sbjct: 59 GHYPDVTLETARDRFEAAKKMVKNGMDPLDAKEEEQEQHRKA--LTVKQLFDDYLVRHAK 116 Query: 120 TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + E + R + ++ P G IK ++ + R + + Sbjct: 117 LNKRESSWREDERLFKVNVEPEWGKRKAEHIKKRDCIELLDKYADR--PALCHNVMKLTR 174 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMH-TMRTASISMSTRCL 238 ++ +A +++ P + E ++ + + ++ +L + A+IS + + Sbjct: 175 KLFNFAVEKDILEHTPFTGVKVPVELESRERI--LTDTEIKKLWRTELPKAAISDEVKQI 232 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298 LLT R E +E+D + W IP R K + H V L+D A+ +L K + Sbjct: 233 IKLLLLTGQRVGEVCGITVNEVD--GNWWTIPQERSKNGQTHRVYLTDTAIKLLG--KSI 288 Query: 299 SGGREFIFPSRIKPN--------QPMNSQTVNAALK--------RAGLGG---------- 332 +G + FPS + N + ++ V A++ R + G Sbjct: 289 NG---YYFPSPVVKNDSDGKPVFKHIDENAVAYAIRKNLKDYQPRRPIKGDRISMVQVPE 345 Query: 333 -------VLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPM 385 H LR ST+L + GF ++I+A + H K V + YNR Y ++R Sbjct: 346 EKKMSIAHFTPHDLRRTFSTSLAKLGFNDEIIDAVMGHK-KQGVIKIYNRHKYDTEKRQA 404 Query: 386 MQWWADLVKAADSGSIVLTHLSK 408 + W + + S T + K Sbjct: 405 LVAWEKRLLSLTSDEGQATSVKK 427 >UniRef50_B9R123 Site-specific recombinase, phage integrase family protein n=3 Tax=Alphaproteobacteria RepID=B9R123_9RHOB Length = 451 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 117/432 (27%), Positives = 186/432 (43%), Gaps = 38/432 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDAD----YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 M + + LT E+K K + + GL + + SSG K W R +R Sbjct: 22 MPKAARELTPLEVKRLKNSGRGGNELHFVGGVSGLAIQLLSSGGKTWILRTTVGY--KRR 79 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERW 114 G YP VSL+ AR+ E+K L+ + +DP EH+K + + + + +F +R+ Sbjct: 80 DIGLGGYPDVSLAQARERARETKELIRQGVDPIEHRKSLQSQLVASQMRGLSFSDAVDRY 139 Query: 115 WNVKKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 +VK + + + W +L+ P +G + + I ++ +QP+ ET R Sbjct: 140 LSVKSAELRNEKHKEQWASTLQTYALPHLGKMLVDNITTQDILLVLQPIW-TDKTETASR 198 Query: 174 LCQRINEVMIYAQNTGLIDA-VPSV---NIGKAFEKP----QKKNMPSIRPDQLPQLMHT 225 L RI V+ ++ +G P+ N+ + P + N P+I + Sbjct: 199 LRGRIEAVLSWSTVSGHRTGENPARWAGNLKELLPSPSKIAKSGNWPAIALVEADSWFEG 258 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 +R + + L +R E +A W EID W IP RMK+ +DH VP Sbjct: 259 LRLRDG--TAARALEFLALCASRSGEVRKATWSEIDHKQKTWVIPGERMKVGKDHRVP-L 315 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA----------GLGGVL- 334 L P FIFP+ P++ ++A ++R G Sbjct: 316 SATALALLDALPKREDSPFIFPAPR--GGPLSDMALSAVMRRMHSVELDNGRPGWRDPRN 373 Query: 335 ----VSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 V HGLRS E GF D+ E AL+H +EV RAY RSD +E+RR MM WA Sbjct: 374 GHPAVPHGLRSTFRDWAAESGFARDMAEIALSHSVGSEVERAYRRSDLIERRRGMMSAWA 433 Query: 391 DLVKAADSGSIV 402 + ++ A + +IV Sbjct: 434 EFLRGATASNIV 445 >UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TC0_GEOMG Length = 414 Score = 316 bits (811), Expect = 9e-85, Method: Composition-based stats. Identities = 91/425 (21%), Positives = 156/425 (36%), Gaps = 47/425 (11%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSG------SKLWQFRYYRPLTKQRTKQ 58 + +D I+ KP+ Y + + G +++ SG +K + + Y + +R + Sbjct: 2 STQFSDKFIQNLKPEAKKYYIRESRGFAIVVHPSGIKNPKGTKTFLYIYT--INGKRKEL 59 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK 118 G YP V+L DAR E+ L DP ++ + + TF E + Sbjct: 60 KLGNYPEVTLKDARIKHGEAYARLVNGEDPVT--PPVIKAEPQDENLTFGHFTELYLQWS 117 Query: 119 KTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178 K + + + + I +L +D P I IK + ++ V RG V L + Sbjct: 118 KDNHSPKWHNTIKCALNKDALPVWEYTLIASIKRRDAIAFLENVARRGI--QVINLHKAT 175 Query: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEK--PQKKNMPSIRPDQLPQLMHTMRTASISMSTR 236 + V YA I++ P + K + ++ + + T+ Sbjct: 176 SSVFDYALEREYIESNPMAGLKAKTIPALKPKARERFLSDSEIKHVWKAIDEGPGYDETK 235 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDF-----------NASEWKIPAARMKMNRDHTVPLS 285 ++T RP E A EI W IPA RMK +H + L+ Sbjct: 236 RALKLIMVTAQRPGEVAAMHRREIQTGVGKPRCKICKRCGWWTIPAERMKNGEEHRIYLT 295 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-------------- 331 AL ++ + +IFPS QP+N +++ + R Sbjct: 296 PTALELIGDAE------GYIFPSPQD-GQPINRNSLSQLVSRERNNKKPNGEMYPPYYGL 348 Query: 332 GVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 H LR A T L G P + E L+H + V R YNR DY+E+++ + Sbjct: 349 PEWTPHDLRRTARTLLARVGVPEEHAEEVLSHKKEGLVDR-YNRHDYMEEKKEALIKLEA 407 Query: 392 LVKAA 396 + Sbjct: 408 ELMKL 412 >UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDX8_ERYLH Length = 396 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 115/398 (28%), Positives = 180/398 (45%), Gaps = 19/398 (4%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFG 61 A LT + KA K + DG+GL L++K+SG+K W R +R G Sbjct: 9 AIIMGKLTAVKAKAIK---EAGRYSDGNGLQLVVKASGAKSWILRVQH--DGKRRDIGLG 63 Query: 62 AYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS 121 V ++AR+ E++ ++ DP + + TF +A + + K+S Sbjct: 64 PLSEVGPAEAREKAVEARKVIRGGGDPSGLK--SGSGRISGRPPTFRELATSYHDDHKSS 121 Query: 122 VTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 + W +L+ FP GD + + + ++ ++P+ ET RR+ QR+ Sbjct: 122 WKNAKHREQWLSTLDTYAFPIFGDQPVDRVDSRDVLDCLKPIWNA-KPETARRVLQRVLR 180 Query: 181 VMIYAQNTGLIDAV-PSVNIGKAFEKPQ--KKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 V+ YA G + P+ +I A K + ++ S+ ++P+LM + AS Sbjct: 181 VLNYAHGMGHREHEAPTQSIRAALGKQRSQVRHHASLPYAEMPELMAKLEAASG--VGAM 238 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + +LT R E A+W+E+D W +PA RMK R H VPLS ALAILE K Sbjct: 239 ALRFAILTAARSGEVRGAQWNEMDLAKKTWTVPAERMKARRAHAVPLSPAALAILEDAKG 298 Query: 298 LSGGRE-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPD 355 L E F+FPS ++ T+ A++ A HG R+ E P Sbjct: 299 LRKKPEGFVFPSSR--GIALSDMTLLKAIRAASDQNT-TVHGCRTSFRVWAAEKTSCPAA 355 Query: 356 VIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 EAALAH N+ AY+R+DYL+ RR +M W + Sbjct: 356 AAEAALAHTIHNKAEAAYHRTDYLDIRRQLMADWGAFL 393 >UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas putida RepID=B0KFC6_PSEPG Length = 436 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 94/414 (22%), Positives = 181/414 (43%), Gaps = 19/414 (4%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIK------SSGSKLWQFRYYRPLTKQR 55 + L+D I++ Y D GL L ++ S S+ W+ +Y L + Sbjct: 21 PPFRQKLSDAFIRSLTTSGK-YADGDVPGLYLQVRASLKPGKSPSRHWRLKYR--LRGKE 77 Query: 56 TKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWW 115 G YP V L +AR+L ++ +A IDP + +K ++ + TF VAE W Sbjct: 78 NVYVIGRYPDVGLKEARELARAARNSVANHIDPLKAKKAKIEAQWLNEARTFAYVAEEWM 137 Query: 116 NVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 K + +L+ I PAIG+ ++EIK + + ++ + + RR+ Sbjct: 138 KFKSADLVSKSVAGFRGALQNHILPAIGERPVSEIKLEHITAIITELRYKRIMAMARRVR 197 Query: 176 QRINEVMIYAQNTGLIDAVPS-VNIGKAFEKPQKKNMPSIR-PDQLPQLMHTMRTASISM 233 I ++ +A+ G ++ + N + + + P+I P L + + + ++ Sbjct: 198 TIIRSILGFAEGRGWVERNVALSNTEELKIRHVVTSNPAIERPADLGKFLLRLDDLNLG- 256 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM--NRDHTVPLSDGALAI 291 S +L RP E + RW+++D ++W+ ++ K H VPL + AL + Sbjct: 257 SVAYAMRLLVLLPVRPGELVKMRWEDVDLIGADWRYVVSKTKHLDKSKHIVPLPEQALVL 316 Query: 292 LEMMKPLS----GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTAL 347 L + G ++F S + P + +++ ++ +L++ + +HG R+ T Sbjct: 317 LRELHKDRVVDDAGNGWVFGSPVYPGRSIDATSILKSLQKVWPEYAITAHGFRATYRTIA 376 Query: 348 NE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 +E G P V+E +L+H + Y R+ L QRR Q WA+ + + + Sbjct: 377 HEHLGIDPIVLELSLSHRMPGALGAVYARAQLLSQRREAAQLWANYLDQLRNNT 430 >UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria RepID=B0SXU9_CAUSK Length = 399 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 109/410 (26%), Positives = 172/410 (41%), Gaps = 27/410 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R LT + K + DG GL L I G + W F Y R +RT+ Sbjct: 1 MGRSLHKLTAIQAAKLKV---PGRHSDGGGLYLSIDDGGRRRWVFIYTRGA--KRTELGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G +SL++AR A + +LA +DP+ + + TF A+ + + Sbjct: 56 GGGRDLSLANARVEAAAFRTMLADGLDPKVERARDDQAQ------TFGACADAYVEAMRP 109 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 S + W+ I + + E+ ++ +QP+ R ET RL R+ Sbjct: 110 SWRNEKHAAQWKMTLTKYAAPIRERPVKELTTQDILDVLQPLWTR-TPETAERLRGRMEN 168 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEK--PQKK-----NMPSIRPDQLPQLMHTMRTASISM 233 V+ A+ GL + P+++ + ++ D +P M +RT S Sbjct: 169 VLDAAKAKGLRTGENPARWRGHLNQLLPKRQRLARGHHAALAYDLIPDFMANLRTR--SA 226 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 + +LT +R E A W+E D + W IPA RMK R+H VPLS A+ I E Sbjct: 227 VAARALEFAILTASRSGEVLGATWNEFDLDKKVWVIPATRMKAGREHRVPLSARAMEIAE 286 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGF 352 G+ ++F K +P++S + L+R + HG RS +E GF Sbjct: 287 A--QFDDGKGYVFAGP-KLGKPLSSMAMAMLLRRM--KSDITVHGFRSSFRDWASETTGF 341 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 +V E ALAH N+ AY R D ++RR +M+ WA + +V Sbjct: 342 SHEVCEMALAHTIANKAEAAYRRGDLFDKRRKLMEAWAGYCATQKADQVV 391 >UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae RepID=A9HQA6_9RHOB Length = 398 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 189/406 (46%), Gaps = 33/406 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPL--TKQ---- 54 MA + LT ++ + DG+GL L++ SG++ W R K+ Sbjct: 1 MA-LSGKLTKKLVENLGAG----RHGDGNGLYLVVDPSGARRWIVRVVVKGQKNKKGAPL 55 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 RT G V+++ AR+ E + + ++P+ + K ++ TF A++ Sbjct: 56 RTDFGLGGADIVTINQARERALEYRRMAKTGLNPRFNAKREIP--------TFEEFAKQV 107 Query: 115 WNVKKTSVTE-DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 + + + +L FP IG + I + ++ + P+ ET +R Sbjct: 108 HIDRLPTWKNAKHGQQWINTLRDYAFPKIGRMPIDSVNQPEVMMCLAPIW-TAKHETAKR 166 Query: 174 LCQRINEVMIYAQNTGLIDA-VPSVNIGKAFEKPQKK----NMPSIRPDQLPQLMHTMRT 228 L QRI V+ A++ G D P I +A P+ K + ++ +P +R Sbjct: 167 LAQRIKTVLDVARSKGFRDGENPVTAIKEAHALPKVKGKVNHHKAMHWRDVPAFYSDLRG 226 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 + + M+ LT +R E +W EID +A W PA RMK DH VPL+D Sbjct: 227 RNAM--SAKALMFTCLTGSRTGEVLGTQWGEIDLDARVWTCPAIRMKTGEDHRVPLTDEM 284 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 L+I+E ++ + +++F + K ++P+++ ++ L+R + G + HG RS + Sbjct: 285 LSIIEPLRAMQ--SDYVFEGQ-KRHRPLSNMSMLMLLRRMQVEG-VTVHGFRSTFRDWAS 340 Query: 349 E-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 + P +V E +L+H+ ++V RAY RSD L++RR +M+ W++ V Sbjct: 341 DVANAPREVSEMSLSHLVGSDVERAYARSDLLDRRRALMERWSNYV 386 >UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G635_GEOUR Length = 437 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 99/423 (23%), Positives = 175/423 (41%), Gaps = 30/423 (7%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 RK P TD IK+ KP+ YQ+ +G G + + +G K W + Y +R + + G Sbjct: 13 RKPGPFTDRFIKSLKPESEMYQVREGRGFAIRVLPTGVKTWYYIYT--FNGKRRQLNLGN 70 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVK-KTS 121 YP SL DA K+ ES L+ +DP + + + L + + + K Sbjct: 71 YPDKSLEDAHKVYLESAALVKNGVDPMDKPVAADPPPPQVELTVRRLAVDLYLDEWSKIH 130 Query: 122 VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEV 181 +E + + ++LE D+ PA GD +I+ V+ ++ V R A R + + + Sbjct: 131 HSERWHYNNKKALEADVLPAWGDRLAADIRRKDAVEILELVAKR-APGQARNVLKAARGM 189 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKK---NMPSIRPDQLPQLMHTMRTASISMSTRCL 238 YA + L++ P +I + P+ + + ++ L + + S T+ Sbjct: 190 YTYAVDRELLEYNPFTDIKISRTIPKMQPMSRDRELSEKEIKHLWNAIDEGGGSDGTKRA 249 Query: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR----DHTVPLSDGALAILEM 294 L+T RP E EI W IP R+K + DH + LS A++++ Sbjct: 250 LKLILITGQRPGEVVGMHRQEI--EGKWWTIPWQRIKTRKRRQEDHRIYLSPLAMSLI-- 305 Query: 295 MKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG---------GVLVSHGLRSIAST 345 G+ FIF N M ++ +++ H LR A+T Sbjct: 306 ----GDGKGFIFSDPSGENS-MTENALSHHVRKDIPDTVKKPYYGLPRWTPHDLRRTAAT 360 Query: 346 ALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTH 405 L+ G ++I+ L H K V YNR+ Y ++++ + W+ ++ +G T Sbjct: 361 RLSRIGASDEIIDVILNHAKK-GVSGIYNRNKYDKEKQQWLTKWSQHLEKLINGKQAATS 419 Query: 406 LSK 408 S Sbjct: 420 TSN 422 >UniRef50_Q0BR52 DNA integration/recombination/inversion protein n=6 Tax=Alphaproteobacteria RepID=Q0BR52_GRABC Length = 380 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 198/373 (53%), Gaps = 22/373 (5%) Query: 45 FRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKT 104 +Y + SFGAYP VSL++AR RA++KV+L + DP ++ Sbjct: 1 MKYRY--GGKEKLLSFGAYPGVSLAEARLRRAKAKVVLGEGGDPGA-------GNKPRTQ 51 Query: 105 NTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQA 164 TF A +W + ++ +A + LERD FP +G + ++ I ++ V+ V+A Sbjct: 52 MTFEEAARKWHGHRLDALDAGHATRLLTRLERDAFPVLGKLGLSVITPTDVLAMVRRVEA 111 Query: 165 RGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAF-EKPQKKNMPSIRPDQLPQLM 223 RGAL+ RRL Q ++++ +A G + P+ ++G+ KP+ ++MP I +LP L+ Sbjct: 112 RGALDVSRRLKQHVSQIYRFAIAHGWAERDPAEHLGQLLKPKPRTRHMPRIGRSELPALI 171 Query: 224 HTMRTASI------SMSTRCLFMWQLLTITRPAEAAEARWDEI-DFNAS--EWKIPAARM 274 + TR ++ LLT R E ARW+E D + + W++PA RM Sbjct: 172 RAIDGYDGEETPRRRAVTRAALLFTLLTWVRTNETRHARWEEFEDLDGASPVWRVPAERM 231 Query: 275 KMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVL 334 KM R+H VPL+ +A+L+ ++ S +++F KP+QP++ T+ A R G G Sbjct: 232 KMVREHVVPLAPAVVALLQEVRVYSLA-DYVFVGE-KPDQPISQNTMIYACYRMGYRGRQ 289 Query: 335 VSHGLRSIASTALNEEG-FPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 HG R +AST NE + PD IE ALAHV+++EVR AYN + YL RR M++ WA + Sbjct: 290 TVHGFRGLASTWANEAECYQPDWIEMALAHVERDEVRGAYNAALYLSPRRRMLEDWAGFI 349 Query: 394 KAADSGSIVLTHL 406 ++ S + V Sbjct: 350 QSHLSAAPVADEA 362 >UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FR8_THICR Length = 396 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 98/405 (24%), Positives = 179/405 (44%), Gaps = 21/405 (5%) Query: 5 TKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 L+D +I+ A L DG GL++ I +K ++FRY RP+ K+ G YP Sbjct: 2 INKLSDVQIRKAVHPSTK-SLSDGKGLSIEIMPK-AKRFKFRYQRPVNKKINNLVLGYYP 59 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 ++SL AR++ + + LL K IDP+ ++ F + + + K +E Sbjct: 60 SMSLKAAREIAQQYRELLKKGIDPKYQ--------TSSEKVDFDHIIQLYLKKGKADWSE 111 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + E + G+ +I + + ++ V G+ T +L I+ Sbjct: 112 KHFNTTKGRYENFLKNPFGNRDAAQITSFDIYNLLESVAQSGSYGTAEKLSYIISGAYSQ 171 Query: 185 AQNTGLIDAVPSVNI-GKAFEKPQKKNMPSI------RPDQLPQLMHTMRTAS-ISMSTR 236 A G++ P+ + + + + + MP ++L + ++ ++ + +++ + Sbjct: 172 AAILGMVKFNPAAGVMKQVTKTKKTQQMPHFNLTRKGESERLGRFLNDIKALNKTNIAVK 231 Query: 237 CLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR-DHTVPLSDGALAILEMM 295 + L R A + + D + I A MK + D VPLS A+ +LE + Sbjct: 232 TALLLSPLLFMRSGSLASLKLESYDKDNKWLLINAEDMKKDHSDFIVPLSTQAINLLETL 291 Query: 296 KPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPP 354 + + ++F SR + + +N A R+G + HGLR A+T L E GF Sbjct: 292 IAATKPKIYVFESRASKLGHIRIEAINKAKSRSGWRFDDVTIHGLRHTATTYLTEIGFDY 351 Query: 355 DVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 +V E L H VR YN++ +L++RR MMQ WAD + +G Sbjct: 352 EVTEMQLHHKLV-GVRGIYNKAMHLDKRREMMQKWADYLDNLRNG 395 >UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium meliloti RepID=Q92LG2_RHIME Length = 409 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 102/414 (24%), Positives = 167/414 (40%), Gaps = 30/414 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M LTD +++ K DG L L ++ +GSK + + + K++ + + Sbjct: 1 MP--INKLTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKAT--IDKKQREWTI 53 Query: 61 GAYP----AVSLSDARKLRAESKVLLAKDI--DP--QEHQKEQVRNSQEAKTNTFLLVAE 112 G+Y SL++ARK R E ++ +P + + S F + Sbjct: 54 GSYGSEEHHFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSI 113 Query: 113 RWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 + WRS +I + + I ++ ++P+ + ET Sbjct: 114 ELIQQIEGGFRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDVLAILRPIWST-KAETAS 172 Query: 173 RLCQRINEVMIYAQNTGLIDA-VPSVN---IGKAFEKPQ---KKNMPSIRPDQLPQLMHT 225 R+ RI V+ A+ G P+ + K Q + + P++ LP L Sbjct: 173 RVRGRIERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQK 232 Query: 226 MRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLS 285 + + + +LT R E A+W+E D W IPA+RMK R+H VPLS Sbjct: 233 LTSIDT--IASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLS 290 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIAST 345 D + IL+ M+ + +F+FP + P++ T++ L GL HG RS Sbjct: 291 DSCIEILKRMQKIR-HSDFVFPGTR-EHAPLSDMTLSKVLH--GLCKGYTVHGFRSTFRD 346 Query: 346 ALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 E F + EA LAH + V RAY R + LE RR +M W + S Sbjct: 347 WCGEKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFILTGRS 400 >UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KC37_9RHOB Length = 385 Score = 313 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 159/407 (39%), Gaps = 33/407 (8%) Query: 1 MARKTK-PLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTK 57 M + + PLT+ I+ AKP D Y L+D GL L + +SG+K W R + + Sbjct: 1 MPKLAQQPLTELAIRKAKPADKRYDLFDASVRGLGLRVATSGTKSWFMM--RRFNGRMLR 58 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 +FG YP ++L++AR ++ + + KT+ F +V + W Sbjct: 59 TTFGRYPDLTLANARLKAPNVLADMSDGL-----------TQGQRKTDLFKVVLDEWL-- 105 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 KK + ++ + PA G + + I + + + + G+ R+ Sbjct: 106 KKDQAKNKSVHQVRVAMYKHALPAFGPMPVASITKRDVNRLIDKIVDAGSPVAANRVLAF 165 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 + + +++ P+ I +K + +++ + Sbjct: 166 TKRFFSWCKERDILELSPAEAIRP--PSKEKTRDRVLTLEEIKGFWAACDQ--MGYPWGP 221 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 +F LLT R E ++A W E+ +PA R K R H + LSD A+ I++ + Sbjct: 222 IFQLLLLTGARLREVSQASWGEVSIADGTLNLPARRTKNGRAHQIQLSDQAINIIQALPK 281 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGG---VLVSHGLRSIASTALNE-EGFP 353 + G + IF ++ + KR + H LR +T E G Sbjct: 282 VEGQ-DLIFT--TNGTTAVSG--FSKVKKRLDIISGVADWRFHDLRRSFATHSTERLGIS 336 Query: 354 PDVIEAALAHVDKN--EVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 P V + L HV V Y +YLE+RR +Q W + ++ + Sbjct: 337 PVVADKILNHVTGQVRGVAAIYQHGEYLEERRASLQKWGNFIQGLIA 383 >UniRef50_Q7MPT5 Site-specific recombinase, phage integrase family n=14 Tax=Gammaproteobacteria RepID=Q7MPT5_VIBVY Length = 434 Score = 313 bits (803), Expect = 7e-84, Method: Composition-based stats. Identities = 89/412 (21%), Positives = 151/412 (36%), Gaps = 30/412 (7%) Query: 7 PLTDTE-IKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LT + I +K Y DG+GL ++ GS W RY R + + G +P Sbjct: 21 KLTAKQVIAYSKADPKKY--SDGEGLYFCVRKQGSPYWMIRYTTAKG--RREATLGQFPL 76 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +SL+DAR A + + IDP +++ E F + + Sbjct: 77 MSLADARIAAAYFRKEVRDGIDPLLEKQKIELPDIETVDQLFHDWYRTDLSRRL-----K 131 Query: 126 YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYA 185 + +R +DI P IG I E+ A + + ++ ++ + ++ +A Sbjct: 132 HPKIPYRVYTKDISPVIGIKCIAEVTARDVREVLERIRESNRPTIANDTLMYMKQLFRHA 191 Query: 186 QNTGLIDAVPSVNIG-KAFEKPQKKNMPSIRPDQLPQLMHTMRTA--SISMSTRCLFMWQ 242 L P+ + + +++ T S Sbjct: 192 IKLDLTLNNPAAAFTVDDAGGVESSKDRMLSKEEIHYAFSVFHTHINSFGRDNYLACCLF 251 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 L+ R +E EA W E+D W +P R K ++PL A+A ++ + G Sbjct: 252 LVLGVRKSELCEAMWREMDLTTGVWDLPKERSKTGVPISIPLPRQAIAWFNELQIRACGS 311 Query: 303 EFIFPSRIKPNQP-MNSQTVNAAL---------------KRAGLGGVLVSHGLRSIASTA 346 ++FP+R ++P M T+N A+ + G H LR + Sbjct: 312 PYVFPARRASHRPHMGPDTLNRAISKLFGREPGRKKQPPNKMGKLEHFTVHDLRRTFRSL 371 Query: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADS 398 G +V E L H K V Y+R DY E+RR Q AD+V+ + Sbjct: 372 AASLGIAGNVAERCLNHKLK-GVEGIYDRHDYFEERRIAHQTVADVVEPLVN 422 >UniRef50_D1R6D1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6D1_9CHLA Length = 464 Score = 313 bits (803), Expect = 7e-84, Method: Composition-based stats. Identities = 92/421 (21%), Positives = 174/421 (41%), Gaps = 35/421 (8%) Query: 10 DTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQ---RTKQSFGAY- 63 D + +PK+ Y + D GL L +K +GSK W F Y P K+ K+ G + Sbjct: 33 DDYCQKLQPKEKPYYVRDSQVKGLVLRVKPTGSKSWIFCYTVPCHKRKWRERKKGLGCFK 92 Query: 64 ------PAVSLSDARKLRAESKVLLA-KDIDPQEHQKEQVRN--SQEAKTNTFLLVAERW 114 VS+ AR K + DP E ++++ ++A + ERW Sbjct: 93 GGRTGVAGVSVKTARTEAERMKHEVRHNGADPVEDKRKRAAEVIREQASRVLVKDLFERW 152 Query: 115 WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 N + +D + R + +D+ P+IG+++I E++ + + + RG + + Sbjct: 153 ANTDLVN-RKDKGAEARRMMLKDVIPSIGELNIKEVRKGHITEITDQLLQRGVNRMAKVV 211 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKA-FEKPQKKNMPSIRPDQLPQLMHTMRTASISM 233 I ++ +A L++ P+ I K + + D++ +L + +A ++ Sbjct: 212 FSLIRQMFRFAVTRDLLEFDPTAAISKTTIGGANVERDRVLSEDEIQELGIKLSSAGMAD 271 Query: 234 STRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILE 293 + L T R E +ARW DFN W+IP+ K +R+H + LS ++ Sbjct: 272 TATIAIWLVLGTCCRIGELLKARWSHFDFNRKLWRIPSENSKNDREHIIFLSLFTFSLFT 331 Query: 294 MMKPLSGGREFIFPSRIKPNQPMNSQTVNAAL------------------KRAGLGGVLV 335 +K ++G E+ FP+ + + +T+ + G+ Sbjct: 332 QLKAITGEGEWCFPASRLDDHHVCPKTITKQITDRQRSLPNLKNRTKNNAALMLSRGLWK 391 Query: 336 SHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 H LR +T + G P+V E L H ++N V+R Y R Y + + + + ++ Sbjct: 392 PHDLRRTGATLMTALGVLPEVAERCLNHTEENRVKRIYQRHTYESEMKMAWEKLGNHLEK 451 Query: 396 A 396 Sbjct: 452 L 452 >UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3_FRATN Length = 413 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 104/427 (24%), Positives = 190/427 (44%), Gaps = 44/427 (10%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ LT +++++ K DY+L DG+GL + + +GSK WQFRY + Sbjct: 1 MAKT---LTASKLQSLKATGKDYRLNDGNGLYIKVSKAGSKSWQFRY------KGKWLGI 51 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+YPA+SL AR + +LA DP+ +++ N F +V+ + + K Sbjct: 52 GSYPAISLKQARDEAFKYNQMLAGGKDPKLEKEKGKYQ----DNNLFSIVSAKAFETKDP 107 Query: 121 S-----VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLC 175 S +E+ + R I P++ +I +I+ + L ++ R++ Sbjct: 108 SKPYGWKSEEVYNRNLSIYNRFILPSLKTFNINDIEPYQLAGILE----TTTPSNQRKIK 163 Query: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ----LPQLMHTMRTASI 231 +N + YA G++ + +I E P+ I P + QL++ + Sbjct: 164 NLLNMIFTYAVGKGILKYNIARDIQAEKEDPKG--FEFINPVEDKYNFSQLLNDIYNYKG 221 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEI---DFNASEW---KIPAARMKMNRDHTVPLS 285 +T+ +L RP +W++I + + + I A MKM+RD PLS Sbjct: 222 QYNTKMALKLAVLVGFRPNNIVSMKWEDIQEANIDGKKIPFVFISADNMKMSRDFRQPLS 281 Query: 286 DGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKR-AGL----GGVLVSHGLR 340 A +L +K +GG E++F S K + + ++++ AL+ G +HG R Sbjct: 282 KQAYKLLMEIKEYNGGFEYVFHSLSKK-KHITIESLSKALRDTLGYNGTDKPKQHTHGFR 340 Query: 341 SIASTALNEE----GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 T ++ + D I L+H +N + Y+++D+L +R M+Q WAD V Sbjct: 341 KSVRTYISSIRSKYNWCSDSIRMILSHSKENAIDNIYDKNDFLLERSQMLQLWADYVDDV 400 Query: 397 DSGSIVL 403 + S ++ Sbjct: 401 KANSNII 407 >UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4A7S2_9GAMM Length = 412 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 114/414 (27%), Positives = 182/414 (43%), Gaps = 30/414 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M K+ LT + + D +GL LL+ GSK W +RY +R + Sbjct: 1 MGGKSVALTPADCDRIT---RRGRHLDAEGLYLLVARGGSKNWIYRYQHE--GRRRELGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVR----------NSQEAKTNTFLLV 110 G YPAVSL+ AR R ++ + DP E + Q +E TFL V Sbjct: 56 GGYPAVSLAKARMRRDAARDQRQQGHDPLEVRDRQRAQLRAQMAAETAERERAAMTFLRV 115 Query: 111 AERWWNVKKTSVTEDYADDIWR-SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALE 169 A+ + + T WR +L+ FP +G + + E+ +++ + P+ E Sbjct: 116 ADEFIDNNAAGWTNRKHGQQWRNTLKTYAFPILGVVPVGEVTTDQVLQVLTPIWTE-KTE 174 Query: 170 TVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQ 221 T +RL RI V+ YA G + + + ++ ++ + P+ Sbjct: 175 TAKRLQGRIERVLDYATTKGHREGDNPARWRGHLDNVLPRPGKVHRVEHQRALPYLEAPE 234 Query: 222 LMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHT 281 L + + L TR +E EA W EID + EW+IPA RMK ++H Sbjct: 235 LAAKLTDVDTAAGRALLLTLLC--ATRTSETLEATWSEIDLDRKEWRIPAVRMKAGKEHR 292 Query: 282 VPLSDGALAILEMMKPLSG-GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR 340 +PL D A+A+L+ G +++FP + K + +++ + LKR HGLR Sbjct: 293 IPLCDAAVAVLKTQSVHQGERGDWVFPGQ-KRGKCLSNMAMTNVLKRTDWLERTSVHGLR 351 Query: 341 SIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 S + E +P + E ALAH ++V+ AY R+D +EQRR MM WA + Sbjct: 352 STFRDWVGEKTRYPERMAEVALAHQLTDKVQAAYFRADLMEQRREMMNEWAAFL 405 >UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25017 RepID=B0U0U5_FRAP2 Length = 398 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 116/408 (28%), Positives = 187/408 (45%), Gaps = 26/408 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T+IK K + ++ D GL L + +G+K WQ R + ++R G+YP+ + Sbjct: 2 LTETKIKKIKATGKEQRVIDTLGLYLRVDKNGNKTWQLR--HTINEKRKWFGLGSYPSTN 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN-VKKTSVTEDY 126 L++ARKL AE + + D + K + ++ KK S +ED+ Sbjct: 60 LNEARKLSAELRERIDNGED-------ILAKPDAKKVIYVKDLVAQYIEFQKKNSSSEDF 112 Query: 127 ADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQ 186 + + I P IG+ I IK + ++P+ +GA T ++ + + A+ Sbjct: 113 IKKLTNISKNHIIPKIGNRDIQTIKRKDCIDVLEPLIDKGA--TRNKVLSALKGISRLAR 170 Query: 187 NTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTA-----SISMSTRCLFMW 241 + LI+ P+ +I +A + + + MP I P L+ + + +R Sbjct: 171 HNELIENDPTHDIARALPQYKAQPMPHISPLHNKSLLKELLLDLDNYTKGNYISRYALKL 230 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 + RP E +WD D S IPA MKM +DH V LS A I+E +K L GG Sbjct: 231 LPYIVLRPIELVSLQWDFYDAENSRIIIPAEIMKMRKDHIVCLSRQAKQIIEELKDLQGG 290 Query: 302 REFIFPSRIKPNQ-PMNSQTVNAALKRAGL----GGVLVSHGLRSIASTALNEE----GF 352 ++ FPS K N +N +++ A++ G HG R I STA++E F Sbjct: 291 FKYFFPSYYKDNHDHINYESLAKAIRSMGYNGIDKPKQTLHGFRHIYSTAIHELQEQYHF 350 Query: 353 PPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 IE LAH DKN+ R +YN +D L +R +MQ +AD + Sbjct: 351 SELAIELVLAHTDKNKSRASYNFADKLSERAKIMQVYADWIDNLKYAK 398 >UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJP3_HIRBI Length = 395 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 125/408 (30%), Positives = 190/408 (46%), Gaps = 30/408 (7%) Query: 1 MARKT-KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M T L+D + K AK + DG GL L +K +G++ W F Y +R Sbjct: 1 MPDLTSNKLSDLKCKRAKTG----RHSDGGGLYLNVKQTGARNWLFIYRW--GDKRPSIG 54 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKD--IDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 G YP+VSLS+ARK A + L + DP+ ++ V N+ E + F A R + Sbjct: 55 LGGYPSVSLSEARKQAAMCRDWLNQTPRKDPK--KEWMVLNAPEVRIEPFGPFALRHIDA 112 Query: 118 KKTSVTE-DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 K + +LER P + EI+ ++K ++P+ A ET RR+ Sbjct: 113 IKGDFRNAKHIAQWRSTLERYAEPIWA-KPLNEIEVDHVLKCLEPIWAT-KNETARRVRG 170 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFE------KPQKKNMPSIRPDQLPQLMHTMRTAS 230 RI V+ A+ G+ + + + +P++K++ ++ DQ+ T+R S Sbjct: 171 RIEAVLESARVRGMREDPNPASWNGQLKHVLGRKRPKQKHLAALEYDQMHAFWQTLRQKS 230 Query: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290 + +LT R E A W+EID A W IPA RMK + H VPLS ALA Sbjct: 231 G--IGALALQFTILTAARSGEVRGATWNEIDIEAGIWSIPAERMKAEKPHMVPLSQAALA 288 Query: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGL----GGVLVSHGLRSIASTA 346 I++ + G E IF +P++ T+ AL+ L G + +HG RS S Sbjct: 289 IIDHISKARQG-ELIFMGMR-AGKPISDMTMTKALRDMKLTNSQGEAVTAHGFRSTFSDW 346 Query: 347 L-NEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 NE FP ++IE +LAH +V AY R +E+RR +M+ WA V Sbjct: 347 ARNETDFPRELIEESLAHSLG-KVEAAYRRGQAIERRRALMEAWALYV 393 >UniRef50_B5J7B6 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=B5J7B6_9RHOB Length = 446 Score = 310 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 101/439 (23%), Positives = 174/439 (39%), Gaps = 43/439 (9%) Query: 2 ARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFG 61 R K L+ ++ + Y G GL L ++ SGS+ W R ++ +R + G Sbjct: 22 PRIGKSLSAAFVRTVRDPGK-YHDGGGLGLMLRVEPSGSRRWVQRI--VISGRRREIGLG 78 Query: 62 AYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTS 121 P V+L+ AR+ ++ + DP ++ TF AE K + Sbjct: 79 TPPVVTLAAAREAALDNMRTVQAGNDPVAIRRNAR------TFLTFATAAEHAIAAKSSE 132 Query: 122 -VTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 ++ + +L+ P +G + + ++ +++ ++P+ ET RL RI Sbjct: 133 FRSDKHRKQWRSTLDTYALPILGALPVGKVNTADVLRVLEPIWTE-KTETASRLRGRIEA 191 Query: 181 VMIYAQNTGLIDAVPSVNIGKAF----EKP----QKKNMPSIRPDQLPQLMHTMRTASIS 232 ++ +A G + + KP + + P++ + +R Sbjct: 192 ILSWATAAGHREGENAARWKGNLSEMLPKPQRVAKTVHHPALASSDVSVWYAALRGRDG- 250 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 + LT R E W E+D W +PA RMK +R+H VPLS A ++L Sbjct: 251 -VAARALEFLALTAARSGEVRGMTWAEVDLTTGVWTVPADRMKASREHRVPLSAPAFSLL 309 Query: 293 EMMKPLSGGRE-----FIFPSRIKPNQPMNSQTVNAALKRA---------------GLGG 332 E M +F + ++ +++A ++R G Sbjct: 310 ESMAVAPDADPTDCGRPVFSAPR--GGVLSDMSLSAVMRRMQQAEIDVGCAGWLDRASGR 367 Query: 333 VLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADL 392 V HGLRS E G+P D+ E ALAH + V RAY RSD LE+RR MM W+D Sbjct: 368 PAVPHGLRSTFRDWTAECGYPRDMAEMALAHDVGSAVERAYRRSDMLERRRAMMAAWSDF 427 Query: 393 VKAADSGSIVLTHLSKIRL 411 + V++ + + Sbjct: 428 LDGRVETGDVVSFAVRESV 446 >UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodobacter sphaeroides RepID=Q3J1E6_RHOS4 Length = 413 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 88/413 (21%), Positives = 154/413 (37%), Gaps = 28/413 (6%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 L+ ++ KP D ++ D GL L+++ +G K WQ RY + S GA+ Sbjct: 1 MKLSAAGVEKIKPTDKRQEIPDSLCVGLYLIVQPTGKKGWQVRYRH--GGVHRRMSLGAF 58 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P +SL+ AR+ ++ + DP K + + + ++ + + Sbjct: 59 PVLSLAGARERARQTLAAASAGTDPAAEVKAAKAPKLDGDRDKIKTLIGQFDKRHLSKLK 118 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 + R LER + A G+ + +I ++ + + G + T R+ + + Sbjct: 119 --SGAVVRRELERHVVSAWGERDVHQIGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFG 176 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 + ++ P+ + A + + D++ L Sbjct: 177 WCVERDILATSPAAGVKPA--GKETSRARVLTDDEIRWFWTACEAEGFPWG--PFGKVLL 232 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS---G 300 LT R E A+ EI + W + A R K R H VPL+ A L+ ++ ++ G Sbjct: 233 LTGQRLNEVAQMTDSEIRGD--LWHLTADRTKNGRAHDVPLTGAVRAALDEVERVTDEEG 290 Query: 301 GREFIFPSRI--------KPNQPMNSQTVNAALKRAGLG---GVLVSHGLRSIASTALNE 349 FIF + K + V A K G H LR A+T + Sbjct: 291 RVRFIFTTTGRTPVSGFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMAR 350 Query: 350 EGFPPDVIEAALAHVD--KNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 G P V EA L HV + Y R DY +++R ++ WA V + G Sbjct: 351 LGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWARFVLSLVEGE 403 >UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GUV7_SPHAL Length = 403 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 115/415 (27%), Positives = 178/415 (42%), Gaps = 32/415 (7%) Query: 7 PLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV 66 LT +KAA YQ DGDGL L + +G+ W R R +R G+ V Sbjct: 3 KLTAVAVKAALANPGTYQ--DGDGLFLKVGKTGAASWLLRLQR--DGKRQDIGLGSAKLV 58 Query: 67 SLSDARKLRAESKVLLA-KDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTED 125 +L++AR AE + + + D +K +EA TF A ++ + + D Sbjct: 59 TLAEARAKAAELRKAVKVEKRDVLTERK-----DEEAAKVTFREAATQYHSENEAGWKSD 113 Query: 126 -YADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 Y SLE FP +GD++ I A ++ + P+ ET R++ RI V+ Y Sbjct: 114 VYGRQWLASLENYAFPKLGDMTTGGITAADIISVLTPIWQE-IPETARQVRNRICAVLDY 172 Query: 185 AQNTGLIDA-----VPSVNIGKAFEKPQKK--NMPSIRPDQLPQLMHTMRTASISMSTRC 237 + G + S+ G+ + KK N ++ +P + +R +R Sbjct: 173 SHAKGWRSSEAPSGNSSLKAGRGLPRQIKKPANRKAMPYVAVPPFLTALRRKPS--YSRL 230 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 +LT R E A+WDE D + W IPA MK +R H VPLS+ ALA+L Sbjct: 231 ALDLLILTGVRSQEVRLAKWDEFDLDQRLWTIPAEHMKRSRAHIVPLSEAALAVLVKADA 290 Query: 298 LS-GGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDV 356 + G E +FP + M++ T+ ++ HG RS + EGFP V Sbjct: 291 MRLEGAEVVFPGMT--GKAMSNMTLLKVMRDM--QEPFHVHGFRSSFTDWAANEGFPNAV 346 Query: 357 IEAALAHVDKNEVRRAYNRSDYL------EQRRPMMQWWADLVKAADSGSIVLTH 405 +EAALAH + V+ AY R+ YL R +M+ W + + + Sbjct: 347 VEAALAHKTPDAVQAAYRRTTYLGTPDNPGARVKLMEAWGNYCAGTAGANTPINE 401 >UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria RepID=B0T5C0_CAUSK Length = 436 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 103/420 (24%), Positives = 172/420 (40%), Gaps = 39/420 (9%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR + LT ++K DG GL L+++ G K W +RY L + + Sbjct: 1 MARLWERLTALQVKR---TTRPGMHPDGGGLYLMVQKGGGKSWVYRYM--LQGRAREMGL 55 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERWWNVK 118 G +SLS+AR + +++ L IDP E ++ + AK TF + + Sbjct: 56 GPAHTISLSEARAMARDARRLKFDGIDPIEQRQLARTRTTLEAAKGFTFKQASSAYIRAN 115 Query: 119 KTSVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 K E +A +L P G +++I ++ ++P+ + ET R+ R Sbjct: 116 KAGWRNEKHAQQWESTLTTYADPIFGSRGVSDIDTGMILAVLEPIWST-KPETASRVRGR 174 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRTA 229 + V+ +A GL + EK + ++ ++ +L M ++ Sbjct: 175 VEAVLDWATARGLREGENPARWKGHLEKLLPAKSRVHKVEHHAALPYAELSAFMAALKDQ 234 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 + + +LT R E A W EID W IPA RMK ++H VPL+ + Sbjct: 235 PG--AGARALEFTILTAARTGEVIGAEWSEIDLAGQVWIIPADRMKGRKEHRVPLTAPLI 292 Query: 290 AILE----------------MMKPLSGGREFIFPSRIKP--NQPMNSQTVNAALKRAGLG 331 ILE +P+ + P + +++ + A LKR Sbjct: 293 EILEGRKADYAAVIRRVLESKRQPIPDDIPPVGPLFWGTLFGKKLSNMAMLAVLKRMK-R 351 Query: 332 GVLVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390 L +HG RS E + +++E ALAH N+V AY R D E+R+ +M+ WA Sbjct: 352 EDLTAHGFRSTFRDWAAETTEYRSEIVEMALAHTIGNKVEAAYRRGDLFEKRKLLMEDWA 411 >UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7I5J5_THIIN Length = 401 Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 113/404 (27%), Positives = 178/404 (44%), Gaps = 28/404 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA+ LT E++ D +++ GL L ++ GS LW FRY + + ++QS Sbjct: 1 MAK--GQLTAQEVRKWSKVDGLHRVA--TGLYLRVR-GGSALWTFRYM--VAGKASEQSL 53 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G A++L+DA AE + + + D ++TF VA + W K Sbjct: 54 GPISALTLADALAKAAEVRAKIRRGEDFAL---RPSATVVPTPSDTFEEVALQLWESMKP 110 Query: 121 SVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 +AD +L FP G +++EI ++ A+ P+ ET RL QRI Sbjct: 111 GWKNPKHADQWINTLRMYAFPRFGRKAVSEIGTEEVLAALTPIWQT-KHETATRLRQRIE 169 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAF--------EKPQKKNMPSIRPDQLPQLMHTMRTASI 231 V+ A+ GL +K + K+ ++ ++P M +R + Sbjct: 170 AVLSAAKARGLRAGENPAAWRGHLNALLPTISKKRRVKHFEAMDWREVPAFMAQLRQRAN 229 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 + + +LT R W EID W IPA RMK +H VPLS A+ + Sbjct: 230 M--SAWALQFTILTALRTGTVIGTPWSEIDLERRLWVIPAERMKAQVEHRVPLSRQAVEL 287 Query: 292 LEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-E 350 L+ + P G +++F KP +++ + L+ G+ L HG RS S E Sbjct: 288 LQAL-PRQEGSDWVFWGARKPT--ISNMAMLELLR--GMRPGLTVHGFRSSFSDWAAEST 342 Query: 351 GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 FP +E ALAH+ N+V AY R D +E+RR +MQ W D + Sbjct: 343 HFPSQTVEMALAHMITNQVEAAYRRGDLIEKRRELMQAWGDYLD 386 >UniRef50_A3VAJ4 Site-specific recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VAJ4_9RHOB Length = 392 Score = 307 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 147/398 (36%), Gaps = 22/398 (5%) Query: 8 LTDTEIKAAKP-KDADYQLYD--GDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYP 64 LT + A P Y++ D +GL + + ++G+K++ R + G YP Sbjct: 11 LTTKSLDAMPPATTKRYEVRDQKVNGLHVRVSTTGAKVFYTLVRP--NGSRRRIKIGPYP 68 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 VSL+DAR+ E + E+ EA +T + ++ + T+ Sbjct: 69 VVSLADARRRAMEIARDVELGE------FEKTPEVPEASADTLGEMIPKFIELHAKPNTK 122 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 D L F + D I +I+ + K + + A G R I ++M + Sbjct: 123 D-WKRTESVL--HKFDGLKDRPIDQIRRQDVSKVLDGIIANGTPTRANRALSAIKKLMNW 179 Query: 185 AQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLL 244 G I+ P + + + + ++ + L+ Sbjct: 180 CVMRGDIETSPVALLRP--PTREVQRDRVLSDAEIRAIWQHSDAED--YPFGPFLKLLLI 235 Query: 245 TITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREF 304 + R +E A RW E++ + W++PA R+K R H VPL A+ IL + +F Sbjct: 236 SGQRRSEVAGMRWSELNLDEGIWELPANRVKNARLHIVPLPVQAVDILRGLHRF-LDSDF 294 Query: 305 IFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 +F + + + G H R AST + + G P VI+A H Sbjct: 295 VFTTTGRSAISGFGRLKERVDTALPEGTPDWRFHDFRRTASTGMAKLGVMPHVIDAVTNH 354 Query: 364 VDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 + V YNR Y ++R + WA + G Sbjct: 355 KSGVVSGVGATYNRYTYFNEKREALAQWAAHIDEILRG 392 >UniRef50_B5J8B6 Site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=B5J8B6_9RHOB Length = 436 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 106/415 (25%), Positives = 186/415 (44%), Gaps = 34/415 (8%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPL--TKQ---- 54 MA + LT ++ L L++ SG++ W R K+ Sbjct: 40 MA-LSGKLTKKLVENLGAGRHGDGGG----LYLVVDPSGARRWIVRVVVKGQKNKKGAPL 94 Query: 55 RTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW 114 RT G V+++ AR E + + + ++P+ + + + TF A++ Sbjct: 95 RTDFGLGGADIVTINQARDRALEYRRMAKQGLNPRFNAQRDIP--------TFEEFAQQV 146 Query: 115 WNVKKTSVTE-DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRR 173 + + + +L FP IG + + I ++ + P+ ET RR Sbjct: 147 HIERMPTWKNAKHGQQWINTLRDYAFPKIGRMPVDSIDQPEVMMCLSPIWTE-KHETARR 205 Query: 174 LCQRINEVMIYAQNTGLIDA-VPSVNIGKAFEKPQKK----NMPSIRPDQLPQLMHTMRT 228 L QRI V+ A++ G P I A P+ K + ++ +P ++T Sbjct: 206 LAQRIKTVLDVARSKGFRSGENPVTAIKDAQALPKVKTKPKHHKAMHWRDVPAFYTDLKT 265 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 + + + LT +R +E RW+EIDF+A W P RMK H VPL+D Sbjct: 266 RNAM--SANALRFTCLTGSRTSEVLGMRWEEIDFDARLWTCPIERMKTGEVHRVPLTDEM 323 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 L+I+E +K L +++F + K ++P+++ ++ L+R + G + HG RS + Sbjct: 324 LSIIEPLKAL--KSDYVFEGQ-KRHKPLSNMSMLMLLRRMDVEG-VTVHGFRSTFRDWAS 379 Query: 349 E-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 E P ++ E +L+H ++V RAY RSD +E+RR +M+ W+ V A +SG IV Sbjct: 380 EVASAPREIAEMSLSHRVGSDVERAYARSDLIEKRRALMKRWSMYV-AGESGQIV 433 >UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V760_9PROT Length = 384 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 107/398 (26%), Positives = 179/398 (44%), Gaps = 24/398 (6%) Query: 8 LTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 LT IK AKP++ Y +YD GL + I G+K ++F+ L + G + Sbjct: 4 LTTVAIKNAKPEEKPYLIYDSKERGLHVHISVVGTKTFRFK--TKLDGKAKIIKLGDFKH 61 Query: 66 VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW--WNVKKTSVT 123 ++L AR+ + V + IDP + TF V++ + W + Sbjct: 62 MTLEQARQRAFDLNVQIQNGIDPTVQ--------IVPEFKTFAEVSKEFVAWKRDEFGRA 113 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 E L+ D+ PA + SI EI V ++ + AR + + + +N V++ Sbjct: 114 EGTIRKYQECLDNDLLPAFANTSIKEIHTKESVAVIEKINAR-SNSLAIKNIEMLNMVVM 172 Query: 184 YAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQL 243 +A G D+ +N+ ++ K P I P L + + RC Q Sbjct: 173 FAIQRGYRDSYTQLNLSGLIKEKPVK--PKIMPSSLKDTFDKIDQYP-TFIMRCAITIQF 229 Query: 244 LTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRE 303 R +E RW+EIDF +W +PA RMKM R H VPL+ + +L +K +G Sbjct: 230 HVFLRGSEIMGGRWEEIDFEKKQWVVPADRMKMKRTHIVPLTSQTIELLTKLKSATGDSA 289 Query: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 F+FPS K + + ++ A + A L +V HG R++A T + + P ++E L+H Sbjct: 290 FLFPS-SKSVEHIGRDALSKAFRAADLK--IVPHGCRTLAGTWMRNNKYLPHLVETQLSH 346 Query: 364 VDKNEVRRAYN---RSDYLEQRRPMMQWWADLVKAADS 398 + N++ AY YL++RR MMQ W++ + + Sbjct: 347 CESNQIAAAYQTEPHMLYLDERRGMMQEWSNHLSESAK 384 >UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2Y2_9BACT Length = 406 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 117/422 (27%), Positives = 189/422 (44%), Gaps = 36/422 (8%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 LT+T I A K+ DY L+DGDGL L I + G K W R + + K G YP +S Sbjct: 2 LTNTAIAKAAAKEKDYMLFDGDGLYLRISTKGKKKWLIR--SFVGGRERKVVIGEYPVMS 59 Query: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 L +AR+ R + K+ + S KT TF V RW K+ +V+ D+ Sbjct: 60 LQEARRERDDRKMKARTGV------------SIRNKTVTFGDVFARWLKKKEKAVSPDHY 107 Query: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 I R +E + P + + + +I L++ +Q RG ++T RR ++ A + Sbjct: 108 KIIKRRIEMYLLPYLANRPVADISRPELLEVLQHPIERGLIDTARRTGALARSILDAAAD 167 Query: 188 TGLIDAVPSVNIGKAFEKPQKKNMP-SIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTI 246 G + + ++ ++ + + +N + P ++ +L+ + R T Sbjct: 168 KGEVALNIAADLSRSLPEWEVRNFKSAFDPREVRRLLLAIDCYP-RQIVRYALRMVSYTF 226 Query: 247 TRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLS----GGR 302 R +E A W EI + W IP K R VPLS AL IL+ M+ ++ G+ Sbjct: 227 VRRSELRRATWAEIHEDE--WHIPVVHAKKKRIQIVPLSRQALEILDAMRRIAQIRWKGQ 284 Query: 303 EF----IFPSRIK---PNQPMNSQTVNAALKRA-------GLGGVLVSHGLRSIASTALN 348 F IFPS + M + ALK ++ HG R +AST L+ Sbjct: 285 PFEDKPIFPSTRNTPSGSPYMGISAMEVALKWLVAHVPAPDTPPLIDLHGFRHMASTLLH 344 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 E + + IE L+H+ +++ Y++S L RR MMQWWAD + A G + L + Sbjct: 345 EHHWDHEAIERQLSHLKRDKTEATYDKSKLLPLRRRMMQWWADYLDAVKEGRVDLEDVEF 404 Query: 409 IR 410 ++ Sbjct: 405 VK 406 >UniRef50_B5QDA8 Phage integrase family protein n=1 Tax=Salmonella enterica subsp. enterica serovar Virchow str. SL491 RepID=B5QDA8_SALVI Length = 403 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 79/409 (19%), Positives = 159/409 (38%), Gaps = 13/409 (3%) Query: 6 KPLTDTEIKAA--KPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 PL DT+++ KP D ++ DG GL++ I G +Q+RY + + G Y Sbjct: 1 MPLNDTKLRRIDGKPYDGPVEIPDGGGLSVRISPKGLITFQYRYR--FNGKPVRLKLGVY 58 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 ++S+ +AR K L++ +P ++K + E+ + W + Sbjct: 59 GSMSIKEARDAVEVCKKWLSEGKNPAVYRKLDKKKKTESPDI--ATLVNEWLDTPSAKDL 116 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMI 183 Y + R L+ + G + + ++ K + G+ + ++ +V+ Sbjct: 117 VKY-EYWKRMLKLHVTDLYGQLIVDDMDPTHWEKIFLAITKSGSPVQAGNVLVKMKQVIK 175 Query: 184 YAQNTGLIDAVPSVNIG-KAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 YA I + + + K + + ++ + + +S + + Sbjct: 176 YALRRKRITSNSLMLLELTDVGKLPEDGERFLNDVEIGKFWLAIDKTRMSWQNKMVMRLL 235 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 LLT R E AR + D W IP K + LS+ ++ L+ + + G Sbjct: 236 LLTGCRGVELRLARKVDFDLEGRVWVIPKENSKTRKRFVRGLSELSVECLKQVFEVYPGN 295 Query: 303 EFIF-PSRIKPNQPMNSQTVNAA---LKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358 +F P+ ++ ++PM + T+ + ++ +H LR T + E G P V E Sbjct: 296 SIVFPPATLQEDRPMAAGTIISLAEQVETMMDCPHWSAHDLRRTCKTKMAELGVAPHVSE 355 Query: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLS 407 L H + Y++ DY+ +++ WA V S L+ + Sbjct: 356 KILGHKLTGML-AVYDQYDYIPEQQEAADKWAQKVLDCASAISPLSLQN 403 >UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobiales RepID=A6U968_SINMW Length = 391 Score = 303 bits (777), Expect = 7e-81, Method: Composition-based stats. Identities = 122/406 (30%), Positives = 185/406 (45%), Gaps = 29/406 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR LT TEIK PK L DGDGL L SSG++ + F Y R +R + Sbjct: 1 MAR--NLLTVTEIKN-SPKPK---LRDGDGLWLHTSSSGNRHFVFIYIRH--GRRREMGL 52 Query: 61 GAYP----AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 G Y VSL+ AR E + +L + DP E+ + TF A+ + Sbjct: 53 GTYGTGTGQVSLAAARTKAEEIRTILGRGGDPFTEMGERQEKVKPT---TFGQCADDLVD 109 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 ++ + WR + AI + + E+ +V+ ++P+ + ET RL Sbjct: 110 AMESQWRNEKHRAQWRMTLTEYAKAIRKLPVAEVTTDDVVRVLKPIWST-KAETASRLRG 168 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFE-------KPQKKNMPSIRPDQLPQLMHTMRTA 229 RI +V+ +A+ GL + K ++ + ++ +P + +R A Sbjct: 169 RIEKVLDHAKVRGLRTGENPARWKGHLDHILPKAGKLKRGHHAAMPYADVPAFIKKIREA 228 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 S + +LT +R E A+W E DF + W +PA RMK R+H VPL+D L Sbjct: 229 SG--VGARALEFTILTASRTGETMGAKWAEFDFRENVWTVPAERMKGGREHRVPLTDRVL 286 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN- 348 A+L MK S +F+FP K N P+++ T+ +K HG RS + Sbjct: 287 AVLTEMKKRSVN-DFVFPG-SKANTPISNMTMTKVMKTY-EADAFTVHGFRSAFRDWASE 343 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 E F +V EAALAH+ +E RAY R D LE+RR +M+ W + Sbjct: 344 ETEFQGEVAEAALAHITGDETERAYRRGDVLEKRRKLMEAWETYCE 389 >UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8P5_PROMM Length = 422 Score = 303 bits (776), Expect = 9e-81, Method: Composition-based stats. Identities = 99/415 (23%), Positives = 188/415 (45%), Gaps = 31/415 (7%) Query: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKS---SGSKLWQFRYYRPLTKQRTKQSFGAYP 64 LT+ E+++ K Y GD L +L++ SG K + + ++ G + Sbjct: 3 LTEREVRSLSVKSKRYSRSVGDSLYVLVEPVKGSGGKSFVGKMRS--NGKQIDVRIGVFG 60 Query: 65 A----VSLSDARKLRAESKVLLAK-DIDPQE-HQKEQVRNSQEAKTNTFLLVAERWWNVK 118 +L AR + + DP+E + E+ + ++++ T + + + Sbjct: 61 KGPGQWTLKAARDEWFRLRSWYRETGRDPRELQKDEKRQLAKQSSDQTLNELVDSYLIAC 120 Query: 119 KTS--VTEDYADDIWRSLERDIFPAIG-DISITEIK----------AHTLVKAVQPVQAR 165 KT +E D L +I PA+G ++ + + + ++ R Sbjct: 121 KTKYKQSETTIKDKKNKLSNEIIPALGGSTPVSRLGWDEKSKGRTGREAVFEITDSIEKR 180 Query: 166 GALETVRRLCQRINEVMIYAQNTGLIDA--VPSVNIGKAFEKPQKKNMPSIRPDQLPQLM 223 G+L R++ + + YA G ++ P+V + ++ P + D+LPQL+ Sbjct: 181 GSLNQARKVLGVMRHLFDYAIERGWMERGQNPAVQARSVGAGHEVQHNPCLSWDELPQLL 240 Query: 224 HTMRT--ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHT 281 + + S L+T R RWDE+D+ A+ W +P +RMK ++H Sbjct: 241 DDLNRNKGNGSQVVLAAIKLDLMTFLRVGSLVPMRWDEVDYAANLWTVPGSRMKSGKNHW 300 Query: 282 VPLSDGALAILEMMKPLSGGREFIFPSRIKPNQP-MNSQTVNAALK-RAGLGGVLVSHGL 339 VPL+D +L ++ ++G ++++F S ++P ++ +N LK R G GG +HGL Sbjct: 301 VPLTDPIKDLLAHLRKINGDQDYVFWSPRGRSKPHIDESALNQHLKVRLGYGGRQTAHGL 360 Query: 340 RSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 RS+ TA E F +VI+ + H ++VR+AY++S L++R M+ W D + Sbjct: 361 RSLPLTAGQEVLKFSAEVIQRQMDHAVGDKVRQAYDKSQLLDERWKFMRAWCDAL 415 >UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UFB2_9BURK Length = 431 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 103/399 (25%), Positives = 182/399 (45%), Gaps = 13/399 (3%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 M R+ PLT+++++A +P+ A Y + DG+GL + + ++G+K+W+FRY K++ + Sbjct: 29 MPRQAVPLTESQVRALEPRAARYSVADGNGLVIEVMTTGTKVWRFRY-SLNGKRQPLATI 87 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G Y +SL AR + L+A+ I P + EAK + AE + + Sbjct: 88 GDYRMISLRVARAKAQKYAELVAQGISPVATARRDR--GAEAKADVLREAAELYMATEMA 145 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 +++Y R+L++D+ PAIG + + + A +V +++RG+ + I Sbjct: 146 GKSDEYRRTTRRALDKDVLPAIGGLPVKSVTAQHVVAICDSIKSRGSPKMALHTRNVIKR 205 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 + Y L A P+ + + + D++ +H + T+SI + Sbjct: 206 LYEYLIARQLATANPAQVVPARSIATFESRTRVLSGDEIGATLHAIDTSSIRRPLKIALH 265 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300 +LT+ R ++ E+ W+E D + W+IPAAR+K + D V L A+ +L + Sbjct: 266 LLVLTMVRKSDLVESTWEEFDLEKASWRIPAARLKQDADQLVYLPQQAVTLLRELHRARA 325 Query: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLG-GVLVSHGLRSIASTALNEEGFPPDVIEA 359 F+FPS ++P+ T+N A+K GL V H R AS L E Sbjct: 326 ATRFVFPSVRGDDRPIAKSTLNQAVKALGLDVEHFVLHDFRRTASVHLREM------ARH 379 Query: 360 ALAHVDKNEVRRAYNR---SDYLEQRRPMMQWWADLVKA 395 A + R+ + + R + Q WAD V A Sbjct: 380 AQEDKSSAQTRQHARHVEAASAAAEARQIAQRWADFVDA 418 >UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003841F3 Length = 394 Score = 300 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 79/400 (19%), Positives = 147/400 (36%), Gaps = 23/400 (5%) Query: 7 PLTDTEIKAAKPKDAD---YQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAY 63 +TD K D + D G L + + G+K + Y + ++ + + G+Y Sbjct: 4 RITDAIAKRVSAGDRPQVFFWDADVKGFGLRVTNRGAKSFILDYR--IGGRQRRITIGSY 61 Query: 64 PAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVT 123 P S++ AR K + DP + T + +R+ Sbjct: 62 PDWSVAAARTEAGNLKREVDLGNDPMGERHADRAA------PTMRDLWDRYKRDHLPRKA 115 Query: 124 EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPV-QARGALETVRRLCQRINEVM 182 D E+ + P +G + ++ + + + +RG R+ + + Sbjct: 116 ARSQADETMMWEKLVLPTLGKHKVGDVTHTDIEALHRDITVSRGTPVRANRVIEVVRRAF 175 Query: 183 IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQ 242 A I+ P+ P++K + P++L +L + TA + Sbjct: 176 NLAIRWEWIEKNPASG---QLRNPEEKRQRYLSPEELSRLSAAL-TAHHEPVSADAIRML 231 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 +LT R +E A W+ D +A W P+A K ++H VP+S AL +L+ ++ + Sbjct: 232 MLTGARKSEVLGATWEMFDLDAGVWTKPSAHTKQRKEHRVPVSANALTLLKRIRE-TAEG 290 Query: 303 EFIFPSRIKPNQPMNS--QTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360 ++FP +QP+ ++ A K A + G H LR ++ L G +I A Sbjct: 291 PYVFPG-KGGDQPLTDVKRSWAAVCKAADITGA-RIHDLRHSFASLLVSGGASLPIIGAM 348 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 L H +R + D E R + A Sbjct: 349 LGHTQVQTTQRYAHLYD--EPLRAAADHVGKTIDMAGEKK 386 >UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaproteobacteria RepID=A6X006_OCHA4 Length = 426 Score = 300 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 74/419 (17%), Positives = 154/419 (36%), Gaps = 35/419 (8%) Query: 4 KTKPLTDTEIKAAKPKDADYQLYDGD--GLTLLIKSSGSKLWQFRYY-RPLTKQRTKQSF 60 + LT + I +P D D +D + G + + K++ + + T K + Sbjct: 3 QPVKLTKSYIDNLRPTDKDAIYWDSELKGFGVKVTPKNRKVFLVMHRPKGHTGAAKKYTI 62 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G Y ++ AR E +K D ++ + + + + + Sbjct: 63 GTYGEWTVQQARDRAREVLTEGSKGNDVGAIERVERQRKSSDI---LTDLVDEFLKKHAA 119 Query: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180 D+ R LER++ G SI + H ++ ++ ++ RGA R+ I + Sbjct: 120 Q--NKTHDETKRILERELLSKHGKKSIHVVTKHDILSVLEGIRDRGAPYMANRVLAAIRK 177 Query: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240 M + + +I P+ I + + D+ + ++ + + Sbjct: 178 FMNWCVSRDIIAISPANGIS--LPTREVSRDRVLTADETRAALMAAKS--VGYPYGNIVE 233 Query: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL-- 298 LT R E + RW E++ + + W IPA R+K + H V LS ALA+L + Sbjct: 234 LLFLTAQRRDEVGDMRWSELNLDKATWTIPAERVKNGKAHDVHLSKDALALLHSIPRFVS 293 Query: 299 --SGGREFIFPSRIK-------PNQPMNSQTVNAALKRAGLG----------GVLVSHGL 339 + + +F + ++ + + L++ H + Sbjct: 294 ADNVESDLVFTTTGNTPFSGYSKSKTTLDKKMLEVLQKMAEDKGVNPELVKLTPWRLHDI 353 Query: 340 RSIASTALNEEGFPPDVIEAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 R +T L++ G V +A L H + V Y ++ ++++R+ + W D + Sbjct: 354 RRTVTTELSKLGVAIHVADAILNHKSGVISGVAAVYQKNAFIQERQDALNKWCDHLNKI 412 >UniRef50_A1WQF8 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WQF8_VEREI Length = 419 Score = 300 bits (768), Expect = 9e-80, Method: Composition-based stats. Identities = 93/410 (22%), Positives = 158/410 (38%), Gaps = 26/410 (6%) Query: 9 TDTEIKAAKPKDADYQLYDGDGLTLLIKSSGS----KLWQFRYYRPLTKQRTKQSFGAYP 64 TD ++A G GLT + ++G+ W RY ++ G YP Sbjct: 8 TDKTLRAWLNT-GPVDRGIGGGLTFVATAAGALKGQASWILRYR--FGGGAREKVLGRYP 64 Query: 65 AVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTE 124 +SL DAR+ +++ + + +D ++ + + E L A W + + T Sbjct: 65 DLSLKDAREATRQNRARIQQGVDVAAEKRAERLKAHEQVAVAALAQA---WYDRHIAKTY 121 Query: 125 DYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIY 184 + + + R + R I PAIG + +TE++ + K + + G + + + + Sbjct: 122 KHPEVVLRVIRRHIEPAIGKLGVTEVRPLHIDKVLTRILDAGTPTVANDALRHLFRMFHF 181 Query: 185 AQNTGLIDAVPSVNIG-KAFEKPQKKNMPSIRPDQLPQLMHTM-RTASISMSTRCLFMWQ 242 A IDA P + + ++L M T + Sbjct: 182 AVKRRWIDANPVSGFEISDAGGFEVSRQRWLNREELAAFAKAMQDTPNFGRQNELAVWLL 241 Query: 243 LLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR 302 L R E ARW E D W + +R KMN+ +PL+ L LE ++ S Sbjct: 242 LALCVRKMELLSARWTEFDLERGVWSLHPSRTKMNQSIDIPLAAPVLRWLEEVQVFSCNS 301 Query: 303 EFIFP-----------SRIKPNQPMNSQTVNAALKRAGLGG--VLVSHGLRSIASTALNE 349 E++FP R ++ T+N AL R L H +R A T + Sbjct: 302 EYLFPPRRLIHMKGGVPRRNRFGHISPDTLNVALLRLPLDDIEHFTVHDMRRTARTHMAA 361 Query: 350 EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 G V E AL H ++ V YN+ DY ++R+ + WA L++ S Sbjct: 362 LGVDRFVAERALNHKVRD-VEGVYNQYDYFDERKVALDRWAQLLEKVSSS 410 >UniRef50_B9KC61 Site-specific recombinase, phage integrase family n=5 Tax=Campylobacter RepID=B9KC61_CAMLR Length = 392 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 105/411 (25%), Positives = 185/411 (45%), Gaps = 33/411 (8%) Query: 1 MARKTKPLTDTEIKAAKP--KDADYQLYD--GDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 MA+ LTD+ +K+ K + D GL + + SG K F+ + T Sbjct: 1 MAKI-NKLTDSFLKSVKCDNGKKFIKFSDPSIKGLYVFVYPSGRK--LFKTRQAND---T 54 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 + G YP +SL++ R++ S L AK + ++ + F ++ + Sbjct: 55 YITLGEYPLLSLAELREIAINSHKLKAKGQNISNAKRLK-----------FGVLYDEVLE 103 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + S S + IF ++ +I +IK +V ++ ++ + A T+++ Sbjct: 104 NARKSNLAAKTIQRGLSYKEGIFKSLEYKNINDIKRVDIVNILKTIEHKSA--TLQKAKI 161 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGK---AFEKPQKKNMPSI-RPDQLPQLMHTMRTASIS 232 IN+V YA +I+ P +I + Q + P++ + + ++T+ + I Sbjct: 162 WINKVFEYALQLEIIENNPVASIKNNIVFKKPNQVIHQPTLLDESDIKEYINTLIHSDIK 221 Query: 233 MSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAIL 292 S + L ++ LLT RP +A WDEIDF W I A +MKM ++H + LS A++IL Sbjct: 222 QSHKNLMLFVLLTAQRPGNVIKATWDEIDFKNEIWTISAQKMKMRKEHNIALSKQAISIL 281 Query: 293 EMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN---- 348 + + +++F K + KR G G+ +HG R++ + N Sbjct: 282 KNQYAIKVN-DYVFAGSSKKG-CNSENITCNTNKRLGYKGIQSAHGFRAMFRSIANEKQL 339 Query: 349 EEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSG 399 E G D+ E LAH KN + +AYNRS +E +R +MQWW D ++ Sbjct: 340 EHGVSMDIAEQCLAHEQKNAILKAYNRSKNIELKRILMQWWGDYIEKLAGK 390 >UniRef50_A6X585 Phage integrase family protein n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6X585_OCHA4 Length = 444 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 107/458 (23%), Positives = 184/458 (40%), Gaps = 62/458 (13%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQL--YDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 M + LTD IKAAK + +L +D GL + + + G K + F Y + +R Sbjct: 1 MPKLE--LTDKTIKAAKVSEGTRKLDLFDTLARGLCIRVGAGGVKTFYFVY-SDASGKRV 57 Query: 57 KQSFGAYPA----VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAE 112 G Y +L+ ARK E + +A DP ++ + T + E Sbjct: 58 WNKLGEYGEHTGQFTLAAARKQAKELRGYVAGGNDPAAEKRSERAAL------TVFDMVE 111 Query: 113 RWWNVKKTSVTEDYADDIWRSLERDI--------------------FPAIGDISITEIKA 152 + + + D+I R L +++ IG++ ++++ Sbjct: 112 NYLT--RAVASRRSVDEIARRLRKNVSGKDSEGNPLVDDKGKSTASEGVIGNVKLSDLHR 169 Query: 153 HTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMP 212 L K + ++ RGA RL + I ++ +A+ G +D + N+ K E ++ Sbjct: 170 RDLTKCIDALKDRGAHVEANRLFEDIRAMVRWARGRGDLDENLTENMRKPTETAPRER-- 227 Query: 213 SIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAA 272 + D++ + + A + STR + L+T R E + +E+ +A+ W IP Sbjct: 228 WLTEDEIKIVWKALPDADMRESTRRIIRLCLITGQRVGEVSGMTREELSDDATLWTIPGE 287 Query: 273 RMKMNRDHTVPLSDGALAIL-------EMMKPLSGGR--EFIFPSRIKPNQPMNSQTVNA 323 R K + H VPLS A+ I+ E + G + IFPS + P + ++ Sbjct: 288 RAKNKQQHKVPLSSLAMQIILEQQADVEALAARKGRDVPDEIFPSP-GFHGPAGADSIPK 346 Query: 324 ALKRAGLGGV------LVSHGLRSIASTALNEEGFPPDVIEAALAHVD---KNEVRRAYN 374 ALKR + G H LR +T + G P VI L H+ Y Sbjct: 347 ALKRLDVNGNVLGVPAWTPHDLRRTCATHMEMLGVSPHVIGHCLNHISTTKATVTTAVYA 406 Query: 375 RSDYLEQRRPMMQWWADLVKAADSGS--IVLTHLSKIR 410 R DY +++ + W+D + A SGS VL + Sbjct: 407 RYDYAKEKAEALSLWSDRLTAITSGSGAKVLPMRKNAK 444 >UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JEM3_OLICO Length = 390 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 115/407 (28%), Positives = 174/407 (42%), Gaps = 31/407 (7%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR L++T+IKA DGDGL + ++ +GS+ W F Y R +QR + Sbjct: 1 MAR--NKLSETKIKAI---SKPGIYGDGDGLFIRVQKTGSRNWLFVYRR--GQQRNEIGL 53 Query: 61 GAYPA----VSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWN 116 G Y VSL AR+ + LA+ DP+ + TF V E+ Sbjct: 54 GGYGQGTAPVSLPLAREKADAIRQQLARGEDPRASRNAIKPK-------TFGEVMEQLLT 106 Query: 117 VKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 K++ T + W+ R + + + +I + + P A ET RL Sbjct: 107 AKESEWTNPKHAEQWKMTLRTYAKPLHRLPVADIVMGDVKDCILPHWAE-RPETAARLRS 165 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEKP-------QKKNMPSIRPDQLPQLMHTMRTA 229 RI V+ YA A G EK + + ++ PQ + +R + Sbjct: 166 RIQAVIDYAIAHEWRSAGNPARWGGLLEKVMPKRQKLSRGHHAALAYADAPQTIEALRHS 225 Query: 230 SISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGAL 289 S + + LT+ R EA + + E+D A W +PA RMK ++H VPL+ AL Sbjct: 226 SG--TAARAVEFIALTVARSGEARYSTFAEVDVKAKTWTVPAERMKAGKEHIVPLTARAL 283 Query: 290 AILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE 349 I+E M+ + G ++IF +P++ + AL+ A HGLRS + Sbjct: 284 QIVEAMRQRATG-DYIFGGAQDS-KPISDTAMVKALRLASPDKAATLHGLRSTFRDWAGD 341 Query: 350 -EGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 FP D+ E ALAH +E RAY RS L QRR +M W + Sbjct: 342 KTKFPRDIAEMALAHAVGDETERAYRRSTALAQRRKLMDAWERYLNT 388 >UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodobacteraceae RepID=A3V8A4_9RHOB Length = 386 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 163/406 (40%), Gaps = 27/406 (6%) Query: 1 MARK-TKPLTDTEIKAAKPKDADYQLYDG--DGLTLLIKSSGSKLWQFRYYRPLTKQRTK 57 M + T LTDT I++ +PKD Y ++D G + + +SG+ W +R + Sbjct: 1 MPKLSTVRLTDTFIRSLRPKDQRYDVFDASQPGFGVRVATSGALSWVLLTRE--NGRRKR 58 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 + G YPA+SLS AR+ + + + ++ TF E W+ Sbjct: 59 ITLGGYPAISLSKAREAARLALSEIQEGT-----------FGRKNAPATFETAVEEWYA- 106 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + + + +++ + P +G + +IK L++ + V RG L R+ Sbjct: 107 -REQRAKKSFRQVEQAMRLHVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAF 165 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 I +A L+ + P+ + + + D+L + T + Sbjct: 166 ITRFFNFAIERDLLMSSPAAAL--PRPAVEISRDRVLSRDELCAVWETAEQ--MGFPFGR 221 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + +LT R E A RW E+D + + W I R K + H V LS ALA+L + P Sbjct: 222 ITQLLILTAQRRDEVAGMRWSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTI-P 280 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN-EEGFPPDV 356 G + IF + + S+ A R+ + H LR A+T + E P V Sbjct: 281 RQNGVDLIFTTTGRSAVSGFSKAKAALDARSHVSD-WRFHDLRRSAATFMAEELRITPVV 339 Query: 357 IEAALAHVDKN--EVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400 ++ L HV V Y R ++L R + W LV+ + + Sbjct: 340 VDRILNHVSGTVRGVTAVYLRGEHLADREAALAAWGQLVENLVNSN 385 >UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteria RepID=B8GZR1_CAUCN Length = 517 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 112/436 (25%), Positives = 174/436 (39%), Gaps = 51/436 (11%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MAR LT E+K DG GL L + + GSK W +RY L + Sbjct: 86 MARLIDRLTALEVKRL---AKVGMHPDGRGLYLQVHNGGSKSWIYRYT--LKGRVRAMGL 140 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK------------EQVRNSQEAKTNTFL 108 G VSL++AR +++L + +DP + + + F Sbjct: 141 GPTHRVSLAEARAQAQAARLLRDQGLDPIAARAAATPPPEPPSPPKTREIAVAEAGLAFK 200 Query: 109 LVAERWWNVKKTSVTEDYADDIWR-SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGA 167 A + + W +L +P GD ++EI ++ ++P+ + Sbjct: 201 DAAAAYIRTNSAAWRNAKHQAQWSATLATYAYPVFGDRPVSEIDTAMVLSVLEPIWST-K 259 Query: 168 LETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQL 219 ET RL RI V+ +A G +K + ++ ++ + Sbjct: 260 AETASRLRGRIEAVLDWASVRGHRQGENPARWKGHLDKILPAKSKIARVEHHAALPFSTI 319 Query: 220 PQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD 279 P M + T + + +LT R E A+W EIDF A W PA R K ++ Sbjct: 320 PAFMRDLGTRPG--AAARALEFAILTAARTGEVIGAQWSEIDFEARLWTQPAERTKTRKE 377 Query: 280 HTVPLSDGALAILEMMKP--LSGGRE-----------------FIFPSRIKPNQPMNSQT 320 H VPL D A+AIL M+ L+G RE FIF + + +++ Sbjct: 378 HRVPLCDAAMAILASMREAFLTGRREFLLLYNKPVPDDMPLEGFIFAGMRR-GKGLSNMA 436 Query: 321 VNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDVIEAALAHVDKNEVRRAYNRSDYL 379 + L+R G L +HG RS E G+ +V+E ALAH +V AY R D L Sbjct: 437 MLKTLERMGHPD-LTTHGFRSTFRDWAAETTGYQNEVVEMALAHAIAGKVEAAYRRGDLL 495 Query: 380 EQRRPMMQWWADLVKA 395 E+RR +M+ WA + Sbjct: 496 EKRRDLMRDWAAYCAS 511 >UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SVD2_ACILW Length = 388 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 105/396 (26%), Positives = 177/396 (44%), Gaps = 17/396 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 +K L DT + A + + DY+L+D L +K++GSK WQFRY + + + GA Sbjct: 7 KKKGYLADTVLTALEVEMQDYRLWDSPNLYFFVKANGSKSWQFRYKKR-NGKWGWKGVGA 65 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 YP + +AR + + + E + E + K+ Sbjct: 66 YPIIKAKEARVIASGYLKEIEAG------------TFLEVDKYKLSSLIESLLDKKQKKW 113 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQ-ARGALETVRRLCQRINEV 181 + + S+++ I+P G+ + IK + ++ +R+L E Sbjct: 114 SPKNFSKMQLSIKKHIYPEFGNRDLRTIKTMEWYEFFARLEYDLKIPVQMRKLLSFAREA 173 Query: 182 MIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMW 241 +A P + FE+ + N + +LP L+ +R+ S S ST Sbjct: 174 YDWACIYCEYKENPVREVQGFFERHKSGNFKFVDLIELPDLLSAIRSYS-SRSTAIGLEL 232 Query: 242 QLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGG 301 LL RP E +A+W++ DF+ W PA MK ++H VPL D A+ +L+ +K + Sbjct: 233 LLLLFPRPGELQQAKWEQFDFHRKIWIKPAEMMKNKKEHRVPLPDQAIILLKRLKEIQTP 292 Query: 302 REFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPD-VIEAA 360 ++FP R P M+ T N AL G HG R +AST LN + +IE+A Sbjct: 293 SPYLFPLRNDPMMAMSVDTFNEALISLGYENKQHPHGFRHLASTTLNNKFSDKYQIIESA 352 Query: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396 L+HV K + Y+++++ ++R +MQ WAD V + Sbjct: 353 LSHV-KQGTKGIYDKAEHFQERVDLMQGWADYVYSL 387 >UniRef50_A3JW30 Site-specfic recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW30_9RHOB Length = 389 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 174/406 (42%), Gaps = 26/406 (6%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60 MA LT ++ K Y GL L +K SG W R + R Sbjct: 2 MA-----LTAAFVRTVK-NPGRYSDRGAVGLQLYVKKSGRSYWVQRLT--VNGIRRDIGL 53 Query: 61 GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120 G+ P +L++AR++ E+K + DP +++ +A +F A + Sbjct: 54 GSPPITTLAEAREVAFENKRIARAGGDPLAQKRQ------KAVIPSFEQAARQVVVELGP 107 Query: 121 SVT-EDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRIN 179 + A ++E +FP IG ++ +++ + + V+ A RL RI+ Sbjct: 108 TWRGAKEAASFISTMECYVFPRIGGSRVSNVQSSDVRNIIMDVRKT-APTVAARLQTRIS 166 Query: 180 EVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPS--IRPDQLPQLMHTMRTASISMSTRC 237 V ++ P+ + A KP K P + Q+ +H + + + T+ Sbjct: 167 AVFKFSIAKNWRTDNPATSSALALPKPTHKPKPRVSLPYLQVSGCIHAVNNSHAWVGTKL 226 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + +LT +R E +A W EID + W P+ MK H+VPLS+ ALAILE + Sbjct: 227 AIEFTILTASRSGEVRKAEWCEIDGD--LWNRPSEHMKEEIAHSVPLSERALAILEKAQE 284 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNE-EGFPPDV 356 ++ IFP+ ++ T++ +K G + HG R+ T E F +V Sbjct: 285 INNESGLIFPAPR--GGMLSDMTMSKLIKELGFAADV--HGFRTSFRTWSQEQTNFAWEV 340 Query: 357 IEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIV 402 E ALAH + RAY RSDYLE+RR MM W+ + G +V Sbjct: 341 GEVALAHSVGGKSERAYARSDYLEKRRLMMAAWSSYLT-LPRGEVV 385 >UniRef50_A4AB16 Phage integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4AB16_9GAMM Length = 449 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 102/452 (22%), Positives = 187/452 (41%), Gaps = 46/452 (10%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSS--GSKLWQFRYYRPLTKQRTKQ 58 MA LT +KA +D L DG GL ++ + G QF Y K+ Sbjct: 1 MA--LNLLTTARLKAVAEEDIGTILNDGGGLRGRVRKNRAGDLTVQFEYKYRDGKKYRTS 58 Query: 59 SFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERW---- 114 +P SL++ R++ K LAK DP E +K + +Q + N Sbjct: 59 KVEQWPKRSLAEIREIYRSIKTGLAKGEDPIELRKAERLEAQLDQANRLETQRRELERLA 118 Query: 115 ---------------WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAV 159 W + S + + R++++DI PA+G + + +IK L+ + Sbjct: 119 FEAANTRTLTDAIYQWEKLELSRRKRGGAEAIRAIKKDIIPALGGMPLADIKRAMLIDQL 178 Query: 160 QPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNI-GKAFEKPQKKNMPSIRPDQ 218 V RG+L L + + YA ID P + + QK+ + ++ Sbjct: 179 DRVVERGSLVMANHLFGDLKQFFTYAVARDWIDVHPLAGLTKERIGGRQKERDRYLSDEE 238 Query: 219 LPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNR 278 + +L +++A++ ++T L T R E ++ARW++I+ EW+IPA K R Sbjct: 239 ITELTERLQSANLLITTEQSIWIMLSTCCRVGELSQARWEDIELEQGEWRIPARNSKNAR 298 Query: 279 DHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKR----------- 327 H + LS+ A E + ++ G + PSR + ++ ++++ ++ Sbjct: 299 SHIIYLSEFAKIQFEELHRITAGSNWCIPSRSREA-HIDQKSISKQIRDRVRKTSLKGRS 357 Query: 328 ------AGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQ 381 GG H LR +T + E G +VIE L HV+ N+++R Y R + + Sbjct: 358 NSSGTLLLSGGPWTPHDLRRTGATMMGELGVMGEVIERCLNHVEINKLKRTYQRHELRAE 417 Query: 382 RRPMMQWWADLVKAA----DSGSIVLTHLSKI 409 +R + D ++ +G++ + + Sbjct: 418 QREAWRLLGDRLELLSTVDPTGNVTVGSFKRA 449 >UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacteraceae RepID=Q3J2T0_RHOS4 Length = 439 Score = 297 bits (760), Expect = 7e-79, Method: Composition-based stats. Identities = 118/444 (26%), Positives = 191/444 (43%), Gaps = 47/444 (10%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLY----DGDGLTLLIKSSGSKLWQFRYYRPLTKQRT 56 M +K + ++K A ++ GL L I +G+K W R + R Sbjct: 1 MPKKAREWGALDVKRAAHPGDGANVWHAVGGVAGLLLQITPTGAKSWLLRTT--VAGTRR 58 Query: 57 KQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN--TFLLVAERW 114 G+YP V L++AR+ E+K +A +DP E +K A+ TF A++W Sbjct: 59 AMGLGSYPEVGLAEARERAREAKRKIAAGVDPIEERKATRAALAAAQRRSLTFADAADKW 118 Query: 115 WNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRL 174 K + E + +L FP IG +++ E+ +V+A+ + +T ++ Sbjct: 119 IKAKLSDRPEKSQKAVRATLTAYSFPEIGALTVQELTPQDVVRALNTIW-TAKPDTATKM 177 Query: 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFE----------KPQKKNMPSIRPDQLPQLMH 224 + ++ +A +G + K + N P++ +L Sbjct: 178 RGYLEAILSWATVSGYRTGDNPARWAGNLKELLPAPSVVAKGRAGNFPAVPVARLADWWE 237 Query: 225 TMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPL 284 + +T + LT R E A W E+D +A+ W +P ARMKM R+H VPL Sbjct: 238 ELGQREGMGAT--ALRFAALTAARSGEVRGALWSEVDLDAALWVVPGARMKMGREHRVPL 295 Query: 285 SDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRA---------------- 328 S A+A+L + L+G + IFP ++ +V+A ++R Sbjct: 296 SGPAVALLRGLPRLAGTGDLIFPGPR--GGILSDMSVSAVMRRMQEDAETEAKMAGRPVS 353 Query: 329 --GLGGVLV-----SHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQ 381 G HGLRS E G+ D+ E ALAH+ +EV RAY RSD LE+ Sbjct: 354 AAGWRDTRTGRPAVPHGLRSSFRDWAAEVGYDRDMAEIALAHLVGSEVERAYRRSDMLER 413 Query: 382 RRPMMQWWADLVKAADSGSIVLTH 405 RR MM+ WAD++ A SG+ V+ Sbjct: 414 RRAMMERWADVL-AGRSGASVVEF 436 >UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TXN0_MARAV Length = 396 Score = 296 bits (759), Expect = 8e-79, Method: Composition-based stats. Identities = 92/391 (23%), Positives = 157/391 (40%), Gaps = 32/391 (8%) Query: 28 GDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDID 87 G GL + I G+K W +R+ ++ S G YP SL +AR + ++ LLAK I+ Sbjct: 6 GGGLAIRISIRGTKTWFYRFR--FRGKQDAVSLGRYPTTSLLEARDVHGDACALLAKGIN 63 Query: 88 PQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYAD--------DIWRSLERDIF 139 P++ KE + +++ T + + W V ++ + + + Sbjct: 64 PKKAFKESKKVAEQTWTG--QELFDDWIRVYSSTPSTRTKRTPSEQVVRQTTWRWNKYLR 121 Query: 140 PAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNI 199 +G I I I + V + E R+ +N + A GLID P + Sbjct: 122 RTLGQILIPTITKQVAASLISAVSELNSREQARKCLTILNGMFGLAVAKGLIDENPCYGL 181 Query: 200 --GKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARW 257 K + P ++ + + +S+ S R LLT R E +A+W Sbjct: 182 QPSKLGASKGSPRSRVLTPSEMKRFWEALEDSSLDTSVRAALKAILLTGLRRGEICQAKW 241 Query: 258 DEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMN 317 +IDFN + W +P K R HTVP+S +L+ + ++F S P QP+ Sbjct: 242 SDIDFNTNVWNLPPEITKSRRKHTVPISTALKNLLQSL---DMDGTYVFRSTRAPWQPIG 298 Query: 318 SQTVNAALKRA-GLG-------------GVLVSHGLRSIASTALNE-EGFPPDVIEAALA 362 S ++ A+ R G+ H LR +T L E PP VI L Sbjct: 299 SNSLTTAIARLQGIKTQQVNEKAPLFGLERFSVHDLRRTVATGLGEYCETPPHVIRRILN 358 Query: 363 HVDKNEVRRAYNRSDYLEQRRPMMQWWADLV 393 H+ + + Y R+ +++ ++ W+ V Sbjct: 359 HLSDDRLEDIYQRATLFDEQAKALERWSTWV 389 >UniRef50_D2QCK7 Integrase family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QCK7_9SPHI Length = 429 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 104/419 (24%), Positives = 173/419 (41%), Gaps = 27/419 (6%) Query: 1 MAR-KTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 M + + L+ +I+ + + D L DG GL L + GSK W FRY PL+ QR KQS Sbjct: 1 MPKARLHLLSSLQIERLQTVETDQMLNDGGGLYLFNRRHGSKEWIFRYSSPLSGQRRKQS 60 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVR-------NSQEAKTNTFLLVAE 112 G YP SL AR L + + ++++ +DP ++ + +E NT +V + Sbjct: 61 LGTYPDTSLKQARALASSKRDIISRGLDPIVEMQKHRQIEITNVNKREEYGRNTVKVVFQ 120 Query: 113 RWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 W + +D D+I R+ E+D+FP IG+ I E+ + + ++ R Sbjct: 121 AW-KRAELQNRKDKGDEIERAFEKDVFPVIGNKVIGEVTRNDIKFVLERPLKRHVNRMAN 179 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVN-IGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASI 231 RL + + YA++ L P+ I +K + +L L + + + Sbjct: 180 RLLSDLKQFFGYAEDEELTHQDPTRRLIKDRVGGKEKSRQRYLDQKELKLLAGLLPVSGL 239 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291 + L L T R E ARW +D+ + IP+ K H V LSD AL Sbjct: 240 KAEYQHLIWLLLATGCRVNEILRARWSHVDWENRFFHIPSELSKNTLKHVVFLSDFALWH 299 Query: 292 LEMMKPLSGGREFIFPSRIKPN----------------QPMNSQTVNAALKRAGLGGVLV 335 L +K + E+I P+R + + +Q VN G V Sbjct: 300 LARLKA-TQTTEWIVPNRSGTGPITRQVLTKQVTDRQQKTLGNQRVNNPQALILPNGRWV 358 Query: 336 SHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVK 394 H LR A T + E G P +I+ L ++++ Y R+ + ++ + Sbjct: 359 IHDLRRTAGTLMQEIGILPYIIKKCLNQKTEDKIIETYQRAALTDHQQEAFHKLGSYLD 417 >UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobacteria RepID=B8IIS8_METNO Length = 420 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 102/415 (24%), Positives = 170/415 (40%), Gaps = 20/415 (4%) Query: 3 RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGA 62 R+ L+ ++ + DG GL L++ +G K W F Y +R + G Sbjct: 15 REVNKLSARRVQTLT---EPGRHADGGGLYLVVDPAGGKRWVFLYRMA--GRRREMGLGP 69 Query: 63 YPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122 +V L+ AR+L AE++ +A +DP + ++ + TF VAE + ++ + Sbjct: 70 VLSVPLARARELAAEARAQVAGGVDPIDARRAPPSDEPPPHRITFAEVAEVYMTDRERAW 129 Query: 123 TEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM 182 WR ++ + + ++ ++ ++P+ ET RRL RI ++ Sbjct: 130 RNAAHRRQWRQTLEVQAASLWAMPVADVNTEAVLAVLRPIW-HSKAETARRLRGRIERIL 188 Query: 183 IYAQNTGLIDAVPSVNIGKAFE-------KPQKKNMPSIRPDQLPQLMHTMRTASISMST 235 A+ G + K Q+ + ++ ++P + +R T Sbjct: 189 DAARVAGHRGPENPARWKGHLDVLLPRAGKLQRGHHNALPYMEVPAFVAEIRQREA--QT 246 Query: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM 295 +LT R E W E+D + W +P RMK R H VPL A+ IL + Sbjct: 247 ARALELLILTAARSGEVRGMTWAEVDLVGALWTVPKERMKAKRPHRVPLCARAVEILSKL 306 Query: 296 KPLSGGRE-FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN-EEGFP 353 + E IFPSR ++ A L+RA + +HG RS E P Sbjct: 307 HLEAPDAEGLIFPSRND--TVLSDMVFAALLRRAKYPD-ITAHGFRSSFRDWAADETDHP 363 Query: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSK 408 +VIEAALAH+ + RAY R D L +RR +M W V S + ++ Sbjct: 364 REVIEAALAHMVGDATERAYRRGDALAKRRLLMDDWGAYVCGGASAAEPPMSATR 418 >UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6_CUPTR Length = 418 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 24/419 (5%) Query: 1 MA-RKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQS 59 MA R+ LT +I D DG L I SGS+ W F++ L + + Sbjct: 1 MATRQLHRLTALKIGKL---DVPGHYPDGGNLYFQISESGSRSWIFKFT--LRGRSREMG 55 Query: 60 FGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQK--EQVRNSQEAKTNTFLLVAERWWNV 117 G +VSL+ AR A+ + LL +DP E +K ++ R + + F A + Sbjct: 56 LGPLASVSLAAARAEAAKCRDLLRDGVDPIEARKCKQRQRMLELSGPRLFKAAAADYIAK 115 Query: 118 KKTSVTEDYADDIW-RSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQ 176 + + W ++ P +GD + +I +V+ +QP+ + ET RL Sbjct: 116 HRAGWKNEKHAQQWTNTIATYAAPILGDQDVRDIDTAMIVQVLQPIWIK-KRETAFRLRG 174 Query: 177 RINEVMIYAQNTGLIDAVPSVNIGKAFEK--------PQKKNMPSIRPDQLPQLMHTMRT 228 R+ ++ + G + +K + K+ P++ ++P M +R Sbjct: 175 RLECILDAEKALGHREGENPARWRGHLDKLLPKQNRRKKIKHHPALPWQEIPSFMKELRE 234 Query: 229 ASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGA 288 + + +LT+ R E AR +E D W +P RMKM VP++D Sbjct: 235 QRG--TAARMLEHLILTVVRTQEVQFARPEEFDMRYRVWTVPGERMKMELPLRVPMTDRL 292 Query: 289 LAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALN 348 + ++E P +++P R K +P+++ + L+R G G + HG RS + Sbjct: 293 VELVEAALP-GARDGWLYPGR-KKGKPLSNMAMLKLLERMGY-GHVTVHGFRSTFRDWVA 349 Query: 349 EE-GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHL 406 + + + E ALAH +NE AY R D LE+RR MM+ WA + I L + Sbjct: 350 DCTEYADSLAEMALAHAIQNESEAAYRRGDMLERRRKMMRDWAHYCSGQAAAVIPLGTM 408 >UniRef50_B6JJF3 Phage integrase family protein n=2 Tax=Bradyrhizobiaceae RepID=B6JJF3_OLICO Length = 414 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 84/416 (20%), Positives = 150/416 (36%), Gaps = 20/416 (4%) Query: 1 MARKTKPLTDTEIKAAKPKDADYQLYD--GDGLTLLIKSSGSKLWQFRYYRPLTKQR-TK 57 M + LT + I A D +D G + + G K++ Y + R K Sbjct: 14 MPQ--VKLTKSAIDALPTPSHDLVYWDLGCPGFGVKVTPKGRKVFVVMYRTAGSGSRLRK 71 Query: 58 QSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNV 117 + G Y V+L+ AR + + D + R + + E + Sbjct: 72 YTIGPYGRVTLNQARVAAQKVFAAKLEGRDLAAEKAASRRRI---VADRVEDLLEAFIAQ 128 Query: 118 KKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177 + A +I R L R++ G SI EI ++ V ++ RGA ++ + Sbjct: 129 HVSQ--NRSAREISRMLRREVGAVWGSRSIHEISKRDVIAIVNSIEQRGAPIAANKMLKT 186 Query: 178 INEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRC 237 I + L+D P+ + Q + D+L +++ R Sbjct: 187 IKTFFRWCVGRALLDRSPADGV--PLPAKQVARDRVLSDDELVRVILAARQLGG--PYGN 242 Query: 238 LFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKP 297 + LT R E A WDEI+ W++P+ R K + H + LSD A+A+L Sbjct: 243 IVEMLALTGQRREEVARCTWDEINLTTRTWRLPSERTKNGKAHEIYLSDQAVAVLARA-- 300 Query: 298 LSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVI 357 + G +F+F S+ + + H LR + + G P V Sbjct: 301 -TTGTKFVF-SKTGAFAFQGFGPAKDEIDKLSDVTGWRLHDLRRTCVSGMARLGVAPHVA 358 Query: 358 EAALAHVDK--NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRL 411 + L H + V Y R D+L +R+ ++ W V + +++ + Sbjct: 359 DKILNHQTGTISGVAAVYQRHDFLAERKAALELWGAHVATIIDDARLVSARDRRAA 414 >UniRef50_A1ANR7 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ANR7_PELPD Length = 453 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 106/465 (22%), Positives = 187/465 (40%), Gaps = 74/465 (15%) Query: 6 KPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA 65 TDT I+ KPK+ YQ+ +GDG + + SG +++ F Y + +R + + G YPA Sbjct: 1 MKFTDTGIRNLKPKEKMYQVREGDGFGVRVLPSGLRIFVFIYT--IAGKRRQMNLGDYPA 58 Query: 66 VSLSDARKLRAESKVLLAKDI-DPQEH------------QKEQVRNSQEAKTNTFLLVAE 112 VSLS+AR+ A+++ +L+++ DPQEH ++ + +E + T + Sbjct: 59 VSLSEARERAADARKVLSRERTDPQEHGFSWHYSPERERREMAAKEKEELENPTVKQLIT 118 Query: 113 RWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVR 172 R+ + R LE+D+ P GD ++ +++ + +Q RG Sbjct: 119 RYIERYAMKNK-KSWQEDKRILEKDVLPLWGDRKAKDVIRRDVIQLLDGMQGRGDGIITN 177 Query: 173 RLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKK-NMPSIRPDQLPQLMHTMRTASI 231 + I + Y LI P K E P K ++ ++ + I Sbjct: 178 -TFKIIRRMFRYGVKQELIPTTPCYGFEKGDELPTTKSKERTLTETEIKAFWGGIDRCMI 236 Query: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRD----HTVPLSDG 287 S R + LLT RP E A EI W+ K+ ++ + L+D Sbjct: 237 SEDVRRILKLTLLTGQRPGEVASMHSSEIS--GRWWEFSPKETKITKEVPRKQRIYLTDM 294 Query: 288 ALAILEMMKPLSGGREFIFPSRIKP--------NQPMNSQTVNAALKRAGLG-------- 331 L+++ +IFPS + P+ + V AL+R L Sbjct: 295 TLSLIRE------KEGYIFPSPKIRTNVNEQPIDTPITERAVAYALRRNLLTHTVKPKPA 348 Query: 332 -------------------------GVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 H LR +T L+E GF ++++A LAH+ K Sbjct: 349 TWKKSSHQSKDKKKFIIPDDKKLDIEKFCPHDLRRTCATILSEIGFSDEIVDAVLAHLKK 408 Query: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS--IVLTHLSKI 409 E+ + YN++ Y ++R+ ++ W +K+ +G V+ K Sbjct: 409 GEI-KTYNKNKYDKERQKALEAWERKLKSIITGQKDNVVPLTHKA 452 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.170 0.516 Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,683,002,143 Number of Sequences: 3077464 Number of extensions: 127145107 Number of successful extensions: 436425 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 4496 Number of HSP's successfully gapped in prelim test: 6249 Number of HSP's that attempted gapping in prelim test: 410090 Number of HSP's gapped (non-prelim): 12152 length of query: 413 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 282 effective length of database: 637,248,572 effective search space: 179704097304 effective search space used: 179704097304 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 95 (40.9 bits)