08/01/2012 13:05:46 : INFO  : Run start: Sun Jan  8 13:05:45 GMT 2012
08/01/2012 13:05:52 : INFO  : Initialised job
08/01/2012 13:05:55 : INFO  : Renaming log file 'phyre2_20120108_130544.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/ae557d4cf7366f43/phyre_20120108_130544.log'
08/01/2012 13:05:57 : INFO  : Initialised job:
Sequence
>batch____
MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQ
LFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTL
PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA
RWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL
SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVW
TLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT
GQGSLGLLMTLMGLLIVLCWLPLATRMSHQGQPV

08/01/2012 13:05:58 : INFO  : Checked sequence
08/01/2012 13:06:02 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 13:06:04 : INFO  : PSI-BLAST 3 iterations
08/01/2012 13:09:34 : INFO  : PSI-BLAST 5 iterations
08/01/2012 13:15:40 : INFO  : Finished PSI-BLAST
08/01/2012 13:15:43 : INFO  : Running Buildali to generate a3m file
08/01/2012 14:54:20 : INFO  : Converting to HMM
08/01/2012 14:55:41 : INFO  : Calibrating HMM
08/01/2012 14:56:00 : INFO  : Searching HMM database
08/01/2012 15:03:40 : INFO  : Finished buildali
08/01/2012 15:03:42 : INFO  : Predicting secondary structure
08/01/2012 15:03:54 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 15:03:56 : INFO  : Predicting Disordered regions
08/01/2012 15:04:02 : INFO  : Predicted Disorder (Disopred)
08/01/2012 15:04:05 : INFO  : Running memsat_svm check
08/01/2012 15:04:33 : INFO  : Globular protein
08/01/2012 15:04:35 : INFO  : Predicted Transmembrane (memsat_svm) ID 'ae557d4cf7366f43'
08/01/2012 15:04:37 : INFO  : Initialising fold library search
08/01/2012 15:04:42 : INFO  : Initialised search input
08/01/2012 15:04:46 : INFO  : Building Ensemble models
08/01/2012 15:04:51 : INFO  : Building hh.c2gfpA_.model.1.pdb
08/01/2012 15:05:14 : INFO  : Building c2gfpA_.1.pdb
08/01/2012 15:05:37 : INFO  : Building d1pw4a_.2.pdb
08/01/2012 15:05:59 : INFO  : Building c3o7pA_.3.pdb
08/01/2012 15:06:19 : INFO  : Building d1pv7a_.4.pdb
08/01/2012 15:06:41 : INFO  : Building c2xutC_.5.pdb
08/01/2012 15:07:02 : INFO  : Building c2g9pA_.6.pdb
08/01/2012 15:07:24 : INFO  : Building c3rkoN_.7.pdb
08/01/2012 15:07:47 : INFO  : Building d3proc1.8.pdb
08/01/2012 15:08:09 : INFO  : Building c3b9yA_.9.pdb
08/01/2012 15:08:34 : INFO  : Building c3lrcC_.10.pdb
08/01/2012 15:08:55 : INFO  : Building d3cx5c2.11.pdb
08/01/2012 15:09:17 : INFO  : Building c2inpD_.12.pdb
08/01/2012 15:09:39 : INFO  : Building d1uxca_.13.pdb
08/01/2012 15:10:00 : INFO  : Building c2jplA_.14.pdb
08/01/2012 15:10:21 : INFO  : Building c1hn3A_.15.pdb
08/01/2012 15:10:44 : INFO  : Building d1bw6a_.16.pdb
08/01/2012 15:11:05 : INFO  : Building c4proD_.17.pdb
08/01/2012 15:11:27 : INFO  : Building d1h3na1.18.pdb
08/01/2012 15:11:49 : INFO  : Building c3mkuA_.19.pdb
08/01/2012 15:12:13 : INFO  : Building d2hoea1.20.pdb
08/01/2012 15:13:06 : INFO  : Finished HH model building
08/01/2012 15:13:09 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 15:14:20 : INFO  : html domain output complete ID 'ae557d4cf7366f43'
08/01/2012 15:45:50 : INFO  : Run end  : Sun Jan  8 15:45:48 GMT 2012
