BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (173 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P23484 Probable RNA polymerase sigma factor fecI n=27 T... 354 5e-97 UniRef50_C4XCZ5 RNA polymerase sigma factor n=9 Tax=Enterobacter... 313 1e-84 UniRef50_A9BUB1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 8e-41 UniRef50_C1DFE8 ECF sigma factor, FecI family n=5 Tax=Gammaprote... 168 8e-41 UniRef50_A6T181 RNA polymerase sigma-70 factor, ECF subfamily n=... 167 2e-40 UniRef50_A6T3U0 RNA polymerase sigma-70 factor, ECF subfamily n=... 167 2e-40 UniRef50_Q39ER9 Sigma-24 (FecI-like) n=6 Tax=Proteobacteria RepI... 161 9e-39 UniRef50_A9BWH7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 157 2e-37 UniRef50_A6SX54 Uncharacterized conserved protein n=3 Tax=Proteo... 156 2e-37 UniRef50_C6DJA9 RNA polymerase sigma factor n=6 Tax=Enterobacter... 156 3e-37 UniRef50_B3PJT4 RNA polymerase sigma factor, sigma-70 family n=1... 154 8e-37 UniRef50_Q4KKE1 RNA polymerase sigma-70 factor, ECF subfamily n=... 153 3e-36 UniRef50_B0KIQ2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 152 3e-36 UniRef50_Q48ML0 RNA polymerase sigma-70 family protein n=19 Tax=... 152 4e-36 UniRef50_Q2L2C6 RNA polymerase ECF-family sigma factor (Fragment... 151 1e-35 UniRef50_A5W6M8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 150 2e-35 UniRef50_A6SVZ7 RNA polymerase sigma-70 factor, ECF subfamily n=... 149 3e-35 UniRef50_Q52208 PupI protein n=1 Tax=Pseudomonas putida RepID=Q5... 149 4e-35 UniRef50_C1DDL3 Sigma factor, FecI family n=3 Tax=Proteobacteria... 149 5e-35 UniRef50_B0KPG3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 148 7e-35 UniRef50_D0J502 RNA polymerase, sigma-24 subunit, ECF subfamily ... 147 1e-34 UniRef50_A6SZL5 RNA polymerase sigma-70 factor, ECF subfamily n=... 146 2e-34 UniRef50_D0J6Z4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 146 2e-34 UniRef50_C6XBX6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 146 2e-34 UniRef50_A9C155 RNA polymerase, sigma-24 subunit, ECF subfamily ... 146 4e-34 UniRef50_Q6FBE7 Alternative RNAP sigma factor required for fecA ... 146 4e-34 UniRef50_C3JY07 Putative RNA polymerase sigma factor n=1 Tax=Pse... 145 4e-34 UniRef50_A6SZM0 RNA polymerase sigma-70 factor, ECF subfamily n=... 145 4e-34 UniRef50_B1JF11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 145 5e-34 UniRef50_A4XVR2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 145 6e-34 UniRef50_Q82VL0 Probable sigma-70 factor, ECF subfamily n=2 Tax=... 144 8e-34 UniRef50_Q88IB3 RNA polymerase sigma-70 factor, putative n=2 Tax... 143 3e-33 UniRef50_A6SXC6 RNA polymerase sigma-70 factor, ECF subfamily n=... 143 3e-33 UniRef50_C3K1F8 Putative iron-related RNA polymerase sigma facto... 141 7e-33 UniRef50_C6DBT2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 140 1e-32 UniRef50_B7X446 Transcriptional regulator, LuxR family n=1 Tax=C... 140 2e-32 UniRef50_Q1GXU3 Sigma-24 (FecI-like) n=1 Tax=Methylobacillus fla... 138 7e-32 UniRef50_B0KJM4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 138 7e-32 UniRef50_B9P6N4 Predicted protein n=8 Tax=cellular organisms Rep... 136 3e-31 UniRef50_Q1LG57 Sigma-24 (FecI-like) n=2 Tax=Burkholderiaceae Re... 135 5e-31 UniRef50_B4SLV1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 135 8e-31 UniRef50_B3PJT7 Probable fecI Specialized sigma subunits of RNA ... 134 2e-30 UniRef50_B0KPE9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 132 4e-30 UniRef50_B1KAJ1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 132 4e-30 UniRef50_Q88Q31 RNA polymerase sigma-70 factor, ECF subfamily n=... 132 5e-30 UniRef50_A5VWU6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 131 8e-30 UniRef50_Q4KBG5 RNA polymerase sigma-70 factor, ECF subfamily n=... 130 2e-29 UniRef50_D1ST93 RNA polymerase, sigma-24 subunit, ECF subfamily ... 130 2e-29 UniRef50_Q4KDP7 RNA polymerase sigma-70 factor, ECF subfamily n=... 129 4e-29 UniRef50_A6VD05 Probable sigma-70 factor, ECF subfamily n=9 Tax=... 128 9e-29 UniRef50_C6X947 RNA polymerase, sigma-24 subunit, ECF subfamily ... 127 1e-28 UniRef50_A1BCE5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 127 1e-28 UniRef50_B7VA10 Probable sigma-70 factor, ECF subfamily n=6 Tax=... 127 2e-28 UniRef50_Q2L0R0 RNA polymerase sigma factor n=1 Tax=Bordetella a... 126 2e-28 UniRef50_B0KLJ1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 123 2e-27 UniRef50_A9IDD4 RNA polymerase sigma factor n=6 Tax=Proteobacter... 122 4e-27 UniRef50_C6DKM4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 120 1e-26 UniRef50_A6W1Y2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 120 2e-26 UniRef50_A6T0J3 RNA polymerase sigma-70 factor, ECF subfamily n=... 119 4e-26 UniRef50_Q13G71 Sigma-24 (FecI) n=3 Tax=Burkholderiaceae RepID=Q... 118 7e-26 UniRef50_C6CDZ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 116 3e-25 UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma su... 116 3e-25 UniRef50_Q1IAL3 Putative RNA polymerase sigma-70 factor n=1 Tax=... 115 6e-25 UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acineto... 113 3e-24 UniRef50_C6X945 RNA polymerase, sigma-24 subunit, ECF subfamily ... 113 3e-24 UniRef50_C4SII1 DNA-directed RNA polymerase specialized sigma su... 112 4e-24 UniRef50_Q6FD19 Putative RNA polymerase sigma factor n=1 Tax=Aci... 112 4e-24 UniRef50_A4STR8 RNA polymerase sigma factor FecI n=3 Tax=Gammapr... 112 5e-24 UniRef50_Q3K822 Putative RNA polymerase sigma factor n=1 Tax=Pse... 112 7e-24 UniRef50_D0S2J0 Putative uncharacterized protein n=1 Tax=Acineto... 108 6e-23 UniRef50_D0KIJ0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 107 1e-22 UniRef50_B1ZHY5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 104 1e-21 UniRef50_B6IXY1 RNA polymerase sigma-70 factor. ECF family prote... 103 3e-21 UniRef50_B4RFZ0 RNA polymerase sigma-70 factor, ECF subfamily n=... 100 3e-20 UniRef50_B7UW20 Probable sigma-70 factor, ECF subfamily n=12 Tax... 94 2e-18 UniRef50_B7KZS3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 90 3e-17 UniRef50_Q82WW6 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 86 7e-16 UniRef50_Q4K9A6 RNA polymerase sigma-70 factor, ECF subfamily n=... 85 1e-15 UniRef50_D1P6G0 RNA polymerase sigma factor, sigma-70 family n=4... 84 2e-15 UniRef50_Q7W4H7 ECF-family sigma factor n=2 Tax=Bordetella RepID... 84 2e-15 UniRef50_B7S233 RNA polymerase sigma factor, sigma-70 family n=1... 83 3e-15 UniRef50_B4EXQ8 ECF-family sigma factor n=7 Tax=Enterobacteriace... 82 6e-15 UniRef50_Q4K9E5 RNA polymerase sigma-70 factor, ECF subfamily n=... 82 8e-15 UniRef50_Q82V82 Putative sigma-70 factor, ECF subfamily n=1 Tax=... 82 9e-15 UniRef50_B1ZXK0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 81 2e-14 UniRef50_D0XYL3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 80 2e-14 UniRef50_Q4KBX1 RNA polymerase sigma-70 factor, ECF subfamily n=... 80 2e-14 UniRef50_B2PU08 Putative uncharacterized protein n=1 Tax=Provide... 80 3e-14 UniRef50_Q1GQ36 RNA polymerase, sigma-24 subunit, ECF subfamily ... 79 6e-14 UniRef50_Q07HV8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 79 9e-14 UniRef50_A8ICQ0 RNA polymerase sigma-70 factor n=1 Tax=Azorhizob... 77 2e-13 UniRef50_B0KMD3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 76 4e-13 UniRef50_A4YQ88 Putative sigma-70 factor, ECF subfamily n=1 Tax=... 76 4e-13 UniRef50_Q2IRT3 Sigma-24 (FecI-like) n=2 Tax=Bradyrhizobiaceae R... 76 5e-13 UniRef50_C5CUF5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 76 6e-13 UniRef50_B8EQK9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 75 8e-13 UniRef50_B3PLR0 RNA polymerase sigma factor, sigma-70 family n=1... 75 1e-12 UniRef50_Q1G4X3 BhoD n=1 Tax=Bordetella holmesii RepID=Q1G4X3_9BORD 74 1e-12 UniRef50_C4TZ61 Sigma factor, ECF subfamily n=1 Tax=Yersinia kri... 74 2e-12 UniRef50_B0T5W0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 74 2e-12 UniRef50_Q47F03 Sigma-70 region 2 n=1 Tax=Dechloromonas aromatic... 74 2e-12 UniRef50_B4WBG5 RNA polymerase sigma factor, sigma-70 family n=1... 74 2e-12 UniRef50_Q79AD4 HasI protein n=2 Tax=Gammaproteobacteria RepID=Q... 74 2e-12 UniRef50_Q82WW0 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 74 2e-12 UniRef50_A8EX51 Sigma factor, ECF family n=1 Tax=Arcobacter butz... 73 3e-12 UniRef50_Q4KGY1 RNA polymerase sigma-70 factor, ECF subfamily n=... 73 4e-12 UniRef50_Q21KS5 Sigma-70, region 4 type 2 n=1 Tax=Saccharophagus... 73 4e-12 UniRef50_B0T3U5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 72 5e-12 UniRef50_Q82W77 Putative sigma-70 factor, ECF subfamily n=1 Tax=... 72 7e-12 UniRef50_B4SMM8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 72 8e-12 UniRef50_C3Q8S3 RNA polymerase ECF-type sigma factor n=8 Tax=Bac... 72 8e-12 UniRef50_C1DIP0 RNA polymerase sigma factor, FecI family n=1 Tax... 71 1e-11 UniRef50_Q3SNK8 Fec I like protein n=2 Tax=Nitrobacter RepID=Q3S... 71 1e-11 UniRef50_A5W6B0 Anti-FecI sigma factor, FecR n=3 Tax=Pseudomonas... 71 1e-11 UniRef50_A5FID8 ECF subfamily RNA polymerase sigma-24 subunit n=... 71 2e-11 UniRef50_UPI000174534D RNA polymerase, sigma-24 subunit, ECF sub... 71 2e-11 UniRef50_B0T8M9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 70 2e-11 UniRef50_A9BM34 RNA polymerase, sigma-24 subunit, ECF subfamily ... 70 2e-11 UniRef50_B3QGA7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 70 2e-11 UniRef50_C5AHS8 Putative transmembrane sensor n=1 Tax=Burkholder... 70 3e-11 UniRef50_C6XUM3 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 70 3e-11 UniRef50_D0J7U7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 70 3e-11 UniRef50_C2G377 RNA polymerase ECF family sigma factor n=2 Tax=S... 70 4e-11 UniRef50_A3PQS7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 69 6e-11 UniRef50_Q1I5S0 Putative RNA polymerase sigma-70 factor, ECF sub... 69 7e-11 UniRef50_A6GRF7 Sigma factor, ECF subfamily protein n=1 Tax=Limn... 69 9e-11 UniRef50_B0KF86 RNA polymerase, sigma-24 subunit, ECF subfamily ... 68 1e-10 UniRef50_B8H127 RNA polymerase ECF-type sigma factor n=2 Tax=Cau... 68 1e-10 UniRef50_B1M943 RNA polymerase, sigma-24 subunit, ECF subfamily ... 68 1e-10 UniRef50_C5SMT0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 68 1e-10 UniRef50_A6EA47 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 68 1e-10 UniRef50_C1DGX2 RNA polymerase sigma factor, ECF subfamily n=1 T... 68 2e-10 UniRef50_Q47X53 RNA polymerase sigma factor, sigma-70 family n=2... 68 2e-10 UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 67 2e-10 UniRef50_A7M626 RNA polymerase sigma factor n=5 Tax=Bacteroides ... 67 2e-10 UniRef50_B4W7I6 RNA polymerase sigma factor, sigma-70 family n=1... 67 2e-10 UniRef50_C1DNR4 ECF sigma factor, FecI family n=14 Tax=Pseudomon... 67 2e-10 UniRef50_B4SKC9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 67 2e-10 UniRef50_Q2RW11 Sigma-24 (FecI) n=1 Tax=Rhodospirillum rubrum AT... 67 2e-10 UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 67 4e-10 UniRef50_C7PFD0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 66 5e-10 UniRef50_B9B7A9 RNA polymerase sigma factor n=1 Tax=Burkholderia... 66 5e-10 UniRef50_Q212Z7 Sigma-24 (FecI-like) n=1 Tax=Rhodopseudomonas pa... 66 5e-10 UniRef50_B8KN82 Sigma-70, region 4 type 2 n=1 Tax=gamma proteoba... 66 6e-10 UniRef50_A6V552 RNA polymerase sigma factor, sigma-70 family n=2... 65 7e-10 UniRef50_A6E6E9 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 65 7e-10 UniRef50_D0XPS7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 65 7e-10 UniRef50_Q21I31 Sigma-70, region 4 type 2 n=2 Tax=Gammaproteobac... 65 7e-10 UniRef50_Q3SQY2 Fec I like protein n=3 Tax=Rhizobiales RepID=Q3S... 65 8e-10 UniRef50_Q82VA5 Sigma factor, ECF subfamily n=3 Tax=Proteobacter... 65 9e-10 UniRef50_Q7M8T6 PUTATIVE RNA POLYMERASE SIGMA FACTOR n=1 Tax=Wol... 65 1e-09 UniRef50_C6IQT2 RNA polymerase sigma factor n=3 Tax=Bacteroides ... 65 1e-09 UniRef50_B0SYA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 65 1e-09 UniRef50_C6XYK7 RNA polymerase sigma factor, sigma-70 family n=1... 65 1e-09 UniRef50_A1BAQ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 64 1e-09 UniRef50_B0T9D2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 64 2e-09 UniRef50_Q4KAM1 RNA polymerase sigma-70 family protein n=1 Tax=P... 64 2e-09 UniRef50_Q07KX7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 64 2e-09 UniRef50_A7LTC1 Putative uncharacterized protein n=3 Tax=Bactero... 64 2e-09 UniRef50_Q1YUE0 Putative RNA polymerase sigma factor n=1 Tax=gam... 64 2e-09 UniRef50_B4WD82 RNA polymerase sigma factor, sigma-70 family n=1... 64 2e-09 UniRef50_D2LKP5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 64 2e-09 UniRef50_B0T7R4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 64 3e-09 UniRef50_Q4K5N5 RNA polymerase sigma-70 factor, ECF subfamily n=... 64 3e-09 UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor... 63 3e-09 UniRef50_C1DIF0 RNA polymerase sigma factor, FecI family n=1 Tax... 63 4e-09 UniRef50_UPI0001B512A7 ECF subfamily RNA polymerase sigma-24 fac... 63 4e-09 UniRef50_D2BF54 RNA polymerase sigma factor n=10 Tax=Actinomycet... 63 4e-09 UniRef50_Q217A1 Sigma-24 (FecI-like) n=3 Tax=Bradyrhizobiaceae R... 63 5e-09 UniRef50_D2K2C6 RNA polymerase sigma factor n=1 Tax=Mycobacteriu... 63 5e-09 UniRef50_A8EWQ6 Sigma factor, ECF family n=2 Tax=Arcobacter butz... 62 5e-09 UniRef50_Q1IGG5 Putative RNA polymerase sigma-70 factor, ECF sub... 62 5e-09 UniRef50_A5FNM7 ECF subfamily RNA polymerase sigma-24 subunit n=... 62 6e-09 UniRef50_Q2RUF6 Sigma-24 (FecI) n=2 Tax=Proteobacteria RepID=Q2R... 62 6e-09 UniRef50_Q1QYP9 Sigma-24 (FecI-like) n=1 Tax=Chromohalobacter sa... 62 6e-09 UniRef50_B5CYT2 Putative uncharacterized protein n=1 Tax=Bactero... 62 7e-09 UniRef50_Q3ABF5 RNA polymerase sigma factor n=3 Tax=Clostridia R... 62 7e-09 UniRef50_Q2S652 Possible sigma-70 factor, ECF subfamily, putativ... 62 8e-09 UniRef50_A4BY85 RNA polymerase ECF-type sigma factor n=1 Tax=Pol... 62 8e-09 UniRef50_A3WYG2 RNA polymerase sigma-70 factor, ECF subfamily pr... 62 8e-09 UniRef50_B0SXJ0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 62 9e-09 UniRef50_C3K3P3 Putative ECF-sigma factor n=1 Tax=Pseudomonas fl... 62 9e-09 UniRef50_Q1N724 RNA polymerase sigma-70 factor, ECF subfamily pr... 62 9e-09 UniRef50_D0XYI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 62 1e-08 UniRef50_B1ZTK0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 62 1e-08 UniRef50_Q1I538 Putative RNA polymerase sigma-70 factor, ECF sub... 62 1e-08 UniRef50_D0XW70 RNA polymerase, sigma-24 subunit, ECF subfamily ... 62 1e-08 UniRef50_B0T5U0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 61 1e-08 UniRef50_A4XWB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 61 1e-08 UniRef50_Q1H1L6 Sigma-24 (FecI-like) n=2 Tax=Methylophilaceae Re... 61 1e-08 UniRef50_A8UKN6 RNA polymerase ECF-type sigma factor n=3 Tax=Fla... 61 1e-08 UniRef50_A8EUT3 Sigma factor, ECF family n=2 Tax=Campylobacteral... 61 1e-08 UniRef50_C5SQB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 61 2e-08 UniRef50_B0SXL1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 61 2e-08 UniRef50_A4VQR4 PpiC-type peptidyl-prolyl cis-trans isomerase n=... 60 2e-08 UniRef50_Q2IY00 Sigma-24 (FecI-like) n=1 Tax=Rhodopseudomonas pa... 60 3e-08 UniRef50_B1ZVB3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 60 3e-08 UniRef50_C9KVM7 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 60 3e-08 UniRef50_Q2RRP8 Sigma-24 (FecI) n=1 Tax=Rhodospirillum rubrum AT... 60 3e-08 UniRef50_B4REQ6 RNA polymerase sigma-70 factor,ECF subfamily n=1... 60 3e-08 UniRef50_A9BM45 RNA polymerase, sigma-24 subunit, ECF subfamily ... 60 4e-08 UniRef50_D0J1W9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 60 4e-08 UniRef50_Q1NGV5 Probable sigma-70 factor, ECF subfamily protein ... 60 4e-08 UniRef50_Q39RW4 Sigma-24 (FecI-like) n=1 Tax=Geobacter metallire... 60 4e-08 UniRef50_A6LGM3 RNA polymerase sigma factor n=2 Tax=Parabacteroi... 60 4e-08 UniRef50_B0T4N8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 59 5e-08 UniRef50_C4XM95 RNA polymerase ECF-type sigma factor n=1 Tax=Des... 59 5e-08 UniRef50_C7PKU4 Transcriptional regulator, LuxR family n=1 Tax=C... 59 5e-08 UniRef50_C5SN44 RNA polymerase, sigma-24 subunit, ECF subfamily ... 59 5e-08 UniRef50_Q82VN0 Possible sigma-70 factor, ECF subfamily n=1 Tax=... 59 6e-08 UniRef50_C5SKW0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 59 7e-08 UniRef50_B1ZTN9 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 59 7e-08 UniRef50_Q7UQU8 RNA polymerase sigma-70 factor (ECF subfamily) n... 59 8e-08 UniRef50_Q2Y7Y7 Sigma-24 (FecI-like) n=1 Tax=Nitrosospira multif... 59 8e-08 UniRef50_A6EFD9 Putative RNA polymerase ECF-type sigma factor n=... 59 8e-08 UniRef50_B8HG32 RNA polymerase, sigma-24 subunit, ECF subfamily ... 59 9e-08 UniRef50_B4WB57 RNA polymerase sigma factor, sigma-70 family n=1... 59 9e-08 UniRef50_Q0C430 RNA polymerase sigma-70 factor, ECF family n=1 T... 59 9e-08 UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistip... 58 1e-07 UniRef50_A9FAK3 Putative RNA polymerase sigma factor n=1 Tax=Sor... 58 1e-07 UniRef50_Q0C5P2 RNA polymerase sigma-70 factor, ECF family n=1 T... 58 1e-07 UniRef50_A1B2I3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 58 1e-07 UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 58 1e-07 UniRef50_A6KXC2 RNA polymerase ECF-type sigma factor n=6 Tax=Bac... 58 1e-07 UniRef50_C3REX9 RNA polymerase ECF-type sigma factor n=2 Tax=Bac... 58 1e-07 UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family prote... 58 1e-07 UniRef50_B5GQI4 RNA polymerase ECF-subfamily sigma factor n=4 Ta... 58 1e-07 UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 58 2e-07 UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacter... 58 2e-07 UniRef50_Q3BMR0 RNA polymerase ECF-type sigma factor, FecI famil... 57 2e-07 UniRef50_D0THQ1 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 57 2e-07 UniRef50_A7A9W6 Putative uncharacterized protein n=1 Tax=Parabac... 57 2e-07 UniRef50_C6Y1F4 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 57 2e-07 UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2... 57 2e-07 UniRef50_C7PUM1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 57 2e-07 UniRef50_A7IJ28 RNA polymerase, sigma-24 subunit, ECF subfamily ... 57 2e-07 UniRef50_Q04XI2 RNA polymerase sigma subunit n=4 Tax=Leptospira ... 57 2e-07 UniRef50_A4ABH4 RNA polymerase ECF-type sigma factor n=2 Tax=unc... 57 2e-07 UniRef50_B6IY15 RNA polymerase sigma-70 factor, ECF family prote... 57 2e-07 UniRef50_A5V579 RNA polymerase, sigma-24 subunit, ECF subfamily ... 57 2e-07 UniRef50_Q3SU83 Sigma 24, ECF subfamily n=3 Tax=Nitrobacter RepI... 57 3e-07 UniRef50_B8H2U3 RNA polymerase ECF-type sigma factor n=3 Tax=Cau... 57 3e-07 UniRef50_C7PNV1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 57 3e-07 UniRef50_C8ZVX9 RNA polymerase sigma-70 subunit n=1 Tax=Enteroco... 57 3e-07 UniRef50_D1C6H5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 57 3e-07 UniRef50_B0A679 Putative uncharacterized protein n=1 Tax=Clostri... 57 3e-07 UniRef50_Q15VP4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 57 3e-07 UniRef50_A8TM19 Sigma-24 (FecI-like) protein n=1 Tax=alpha prote... 57 3e-07 UniRef50_D2QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 57 3e-07 UniRef50_B6ITM9 RNA polymerase sigma-70 factor, ECF family prote... 57 3e-07 >UniRef50_P23484 Probable RNA polymerase sigma factor fecI n=27 Tax=Enterobacteriaceae RepID=FECI_ECOLI Length = 173 Score = 354 bits (909), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD Sbjct: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG Sbjct: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL Sbjct: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 >UniRef50_C4XCZ5 RNA polymerase sigma factor n=9 Tax=Enterobacteriaceae RepID=C4XCZ5_KLEPN Length = 173 Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 154/173 (89%), Positives = 161/173 (93%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MSD ATT ASLT ESLYG+HH WLKSWLTRKLQSAFDADDIAQDTFLRVM + TLSTIRD Sbjct: 1 MSDSATTIASLTLESLYGSHHDWLKSWLTRKLQSAFDADDIAQDTFLRVMGNNTLSTIRD 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PRSFLCTIAKRVMVDLFRRN+LEKAYLEMLALMPE APSPEE ESQLETLQL+D MLDG Sbjct: 61 PRSFLCTIAKRVMVDLFRRNSLEKAYLEMLALMPERLAPSPEEHESQLETLQLIDRMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L GKTREAFLLSQLDGLTYSEIA KLGVS+SSVKKYVAKA+EHCLLFRLE+GL Sbjct: 121 LKGKTREAFLLSQLDGLTYSEIALKLGVSVSSVKKYVAKAIEHCLLFRLEHGL 173 >UniRef50_A9BUB1 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Proteobacteria RepID=A9BUB1_DELAS Length = 187 Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 108/156 (69%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 +LY HHGWL+ WL RKL + F+A DIA DTF+ V+ S I PR FL T+A+ ++ Sbjct: 31 HTLYVEHHGWLQGWLRRKLGNVFEASDIAHDTFVNVITSGMAGRIEQPRPFLATVARHLV 90 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 + RR LE+AYL+ LAL+P APSPEER LE+LQ +D LD L K REAFLL+ Sbjct: 91 IRQHRRRLLERAYLDTLALLPAELAPSPEERLIALESLQAVDQALDALAPKVREAFLLAH 150 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L+GL+Y++IA +LGVS++SVK+Y+A+ E C + L Sbjct: 151 LEGLSYADIATRLGVSMTSVKRYLAQGYERCFVLAL 186 >UniRef50_C1DFE8 ECF sigma factor, FecI family n=5 Tax=Gammaproteobacteria RepID=C1DFE8_AZOVD Length = 175 Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 83/158 (52%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY HH WL WL R++ + A D+AQDTF+R ++ +L +R+PR +L T+AKRV++D Sbjct: 19 LYQNHHTWLVGWLRRRMDCSHSAADLAQDTFVR-LIGGSLPELREPRHYLVTVAKRVLID 77 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 FRR LE+ YL+ LA PE SPE R +ETL LD+ML GL K R+AFL+SQL Sbjct: 78 HFRRRTLERTYLDALARQPEAEEVSPEVRLQIVETLLALDAMLLGLGHKPRQAFLMSQLL 137 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 G+ Y+EIA +LGVS+SSV KY+A+A E CLLF L+ L Sbjct: 138 GMNYAEIAERLGVSVSSVTKYIARATEQCLLFALDADL 175 >UniRef50_A6T181 RNA polymerase sigma-70 factor, ECF subfamily n=69 Tax=Proteobacteria RepID=A6T181_JANMA Length = 181 Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 107/149 (71%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY HHGWL +WL ++L ++FDA D+A DTFLRV+ + IR+PR+ L TIA+ ++ + Sbjct: 27 LYTEHHGWLHAWLRKRLGNSFDAADLAHDTFLRVLTKDVPLAIREPRALLTTIAQGMVAN 86 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 L+RR +E+AYL+ LA++PE A SPE R LETL +D +LDGL R+ FLLSQLD Sbjct: 87 LYRRRQIEQAYLDALAVLPESHAISPEARAIMLETLVEIDRLLDGLAPLVRKVFLLSQLD 146 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 GL +EIA +L +SI +VK+Y+AKAV C Sbjct: 147 GLGQAEIAERLAISIPTVKRYIAKAVAQC 175 >UniRef50_A6T3U0 RNA polymerase sigma-70 factor, ECF subfamily n=10 Tax=Proteobacteria RepID=A6T3U0_JANMA Length = 184 Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 117/160 (73%), Gaps = 3/160 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST---IRDPRSFLCTIA 69 +LY HHGWL WL +KL A +A DIAQDTFLR++ ++ + +R+PR++L T+A Sbjct: 25 IHTLYSNHHGWLFGWLRKKLGCAHNAADIAQDTFLRILTAQDKRSDLDLREPRAYLTTVA 84 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 RV+++ +RR +LE+AYLE LAL+P+ AP+PE+R LETL +D+MLD L K R AF Sbjct: 85 GRVLLNHYRRLSLERAYLEALALVPDMYAPAPEDRLIILETLHEIDAMLDALPHKARTAF 144 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 LL+Q +GL+Y+EI+ +L VS+ +VK+Y+A+A E C++ L Sbjct: 145 LLAQFEGLSYAEISVRLDVSVRTVKRYMAQAFEECIMLDL 184 >UniRef50_Q39ER9 Sigma-24 (FecI-like) n=6 Tax=Proteobacteria RepID=Q39ER9_BURS3 Length = 172 Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 78/152 (51%), Positives = 102/152 (67%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 F +LY HHGWL+ WL +KL +A DA D+A DT+LRV+ S T D R +L IA + Sbjct: 12 FRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDSRRYLTQIANGL 71 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 ++DL+RR +E AYL+ + +PE APSPE R +E L +D+MLD L R A LL Sbjct: 72 VIDLYRRRHIESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRLPANARTALLLC 131 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +LDGLTY EIA +LGVS+SSV+KYVA A+ C Sbjct: 132 KLDGLTYREIAAQLGVSVSSVEKYVASALRAC 163 >UniRef50_A9BWH7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Proteobacteria RepID=A9BWH7_DELAS Length = 182 Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/163 (47%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRS 63 A++ + + SLY HH WL+S L ++L + DA D+AQDTF+R++ S IR+PR Sbjct: 17 ASSAPAFSVHSLYQNHHPWLESLLRKRLGNRDDAADLAQDTFVRLLRSPLPQQDIREPRR 76 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L TIA+ ++ DLFRR LE++YL+ LA +P+ APSPEE+ +TL +D ML GL Sbjct: 77 YLATIARGLVADLFRRRTLEQSYLDYLAQLPQSLAPSPEEQAIVQQTLLDVDRMLQGLPP 136 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 K REAF+L+Q + L+Y EIA +LGVS+ +V Y+ +A+EHC L Sbjct: 137 KVREAFVLAQFEELSYPEIAQRLGVSLRTVSNYLTRAMEHCCL 179 >UniRef50_A6SX54 Uncharacterized conserved protein n=3 Tax=Proteobacteria RepID=A6SX54_JANMA Length = 169 Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/150 (50%), Positives = 105/150 (70%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 +LY HHGWL L RKL + +ADD+AQDTF R++ + + IR+PR++L TIA R+ Sbjct: 12 NLYSHHHGWLVGLLRRKLGNVDNADDLAQDTFTRLLTARSEELIREPRAYLTTIASRLTA 71 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 FRR ALE+AYL+ LA MPE PSPE R +E L + +LDGL+ + RE FLL+QL Sbjct: 72 QYFRRLALERAYLDALAGMPEETVPSPETRMLVVEALTEISRVLDGLSPRVREIFLLAQL 131 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 DGLTY+EIA + +S+++V+K + +A +HC Sbjct: 132 DGLTYAEIATQFDMSVNAVQKSMIRAFQHC 161 >UniRef50_C6DJA9 RNA polymerase sigma factor n=6 Tax=Enterobacteriaceae RepID=C6DJA9_PECCP Length = 170 Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/166 (46%), Positives = 108/166 (65%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 M +AT + + + LY HH WL +WL KL A A+D+AQDTFL V+++ L TIR Sbjct: 1 MVRKATASVNDFAQQLYFDHHRWLYNWLRHKLDCAQHAEDLAQDTFLSVLMNPELLTIRQ 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR FL T+A+R++ + +RR +E AYL++L+ P+ PSPE R LE L+ LD+ LDG Sbjct: 61 PRPFLATVARRLVANHYRRKKIEDAYLDVLSSQPDACMPSPETRLLTLEILEQLDAALDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L REAFLL+ L G+ YS+IA +L VS SSVK+Y+ +A C Sbjct: 121 LPAPVREAFLLAHLHGMRYSDIAERLRVSSSSVKQYLQRANLQCFF 166 >UniRef50_B3PJT4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJT4_CELJU Length = 172 Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 74/154 (48%), Positives = 105/154 (68%), Gaps = 2/154 (1%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST--IRDPRSFLCTIAKR 71 ESLY HH WLK WL R+L +D+A DTF+R++ S L+ IR+PRS+L TIA Sbjct: 14 ESLYSDHHHWLKRWLRRRLDCPVQVEDLAHDTFVRILKSHQLAAAPIREPRSYLSTIAGA 73 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +++D FRR +E+AYLE LA + + PSPEE+ L+ L +D++LDGL + R+ FL+ Sbjct: 74 LLIDFFRRRTVERAYLEALAGLAQDEWPSPEEQAEILDVLIRIDALLDGLKPRVRKVFLM 133 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 SQLDG+TY++IA +L VS+ +VK +A A HC Sbjct: 134 SQLDGMTYADIAARLDVSLRTVKSDMATAFGHCF 167 >UniRef50_Q4KKE1 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas RepID=Q4KKE1_PSEF5 Length = 179 Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/161 (45%), Positives = 109/161 (67%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 +ATT + LY HHGWL+ WL ++L A D+AQDTFLR+++S ++ RS Sbjct: 12 QATTDGNAQLHRLYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESRS 71 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L IA+ ++VD +RR +E+AYLE +A +PE PS E R LETL +D+MLD + Sbjct: 72 YLAQIARNLVVDQWRRARIERAYLESIAHLPEPQTPSLESRALILETLMQIDAMLDRMPD 131 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 K R+AF++SQ +GL Y++IA +L VS+SSV+KY+ +A++ C Sbjct: 132 KVRQAFVMSQFEGLGYAQIAERLEVSVSSVQKYMTRAIQAC 172 >UniRef50_B0KIQ2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KIQ2_PSEPG Length = 176 Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 8/175 (4%) Query: 7 TTASLTFES----LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM----VSETLSTI 58 +T + F S LY WL +WL ++ + A D+ QD F+RVM + L + Sbjct: 2 STPDVAFTSQVSQLYRAQSKWLHNWLKPRVNCSHLAADLVQDVFVRVMSAADAAVKLEAV 61 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 R+P+ +L TIA+R+M+D RR LE+A+L++LA PE SPE+R + L+TL LD+ML Sbjct: 62 REPKGYLATIARRLMIDHLRRVHLERAWLQVLAEQPEALDISPEQRLALLQTLFELDAML 121 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L K REAFLLSQ+DG+ Y +IA +LG+S SV++YVAKA EHC+++ L GL Sbjct: 122 ASLGPKVREAFLLSQIDGMPYKQIAAQLGISEVSVRRYVAKAAEHCMIYSLGLGL 176 >UniRef50_Q48ML0 RNA polymerase sigma-70 family protein n=19 Tax=Proteobacteria RepID=Q48ML0_PSE14 Length = 198 Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/153 (49%), Positives = 105/153 (68%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 T ESLY H+ WL +WL R+L A D+AQDTF++V+ + I +PR+FL TIAKR Sbjct: 42 TVESLYRAHNTWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTQQIVEPRAFLTTIAKR 101 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 V+ + +RR LE AY + LA +PE APS EER LETL LD +LDGL + AFL+ Sbjct: 102 VLCNHYRRQDLEHAYYQALAELPECVAPSEEERAIILETLVELDQLLDGLPVLVKRAFLM 161 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 SQ+DGL++ +IA +LG+SI++VK+++ KA C Sbjct: 162 SQVDGLSHGQIAAELGISIATVKRHLNKAALRC 194 >UniRef50_Q2L2C6 RNA polymerase ECF-family sigma factor (Fragment) n=4 Tax=Bordetella RepID=Q2L2C6_BORA1 Length = 169 Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 105/156 (67%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 A+ + + LY H WL WL RKL + A+D+AQD F+R++ + R+FL TI Sbjct: 8 ANASVDGLYRQHRSWLMGWLRRKLGGSDHAEDMAQDVFIRIIQGRKQVDVVQARAFLTTI 67 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+ +++D +RR ALE AY + LA +P+ P PE R +++L +LD ML GL+ + REA Sbjct: 68 ARGMLIDHWRRAALEAAYRDYLASLPQVSEPGPEARIEVMQSLAVLDRMLAGLSPRAREA 127 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 F+LSQ+DGLTY EIA +LGVS+SSV++Y+ KA+ C Sbjct: 128 FMLSQIDGLTYPEIAVRLGVSVSSVQQYMVKAMSAC 163 >UniRef50_A5W6M8 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Pseudomonadaceae RepID=A5W6M8_PSEP1 Length = 166 Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/154 (49%), Positives = 100/154 (64%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 LY ++ WLK WL +L +A DA D+A DTFLRVM + IR+PRS+L IA+ + Sbjct: 9 LHQLYSENNSWLKGWLRARLGNAADASDLAHDTFLRVMTARNPLPIREPRSYLSAIARAL 68 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 ++D RR +EKAYL+ LAL PE SPE R S +E L +DS+LD L KTR FL Sbjct: 69 LIDKARRRIIEKAYLQALALRPEPVEVSPEVRLSIIEMLVAVDSLLDELGAKTRAIFLAV 128 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 QL+GLTY A + GVSI++VK ++ KA+ CLL Sbjct: 129 QLEGLTYGAAAERFGVSITTVKNHLIKAMTRCLL 162 >UniRef50_A6SVZ7 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SVZ7_JANMA Length = 178 Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 105/156 (67%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T ++S + LY HHGWLK+WL +K +A D+A DT++RV+ + I PR+FL Sbjct: 13 TASSSDSLTRLYSDHHGWLKAWLRKKTGCPHNAADLAHDTYMRVIETRNAVEIDTPRAFL 72 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 TIAKRV+ FR +E+AYL+ +A +PE PS E + +ETL +D +LDGL K Sbjct: 73 TTIAKRVLASYFRHLEVERAYLDSIADLPEPLVPSLETQAIVIETLLEIDRILDGLPAKV 132 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 R AFL +Q+DG+ Y+EIA +L VS+SSVK+Y+A+A+ Sbjct: 133 RTAFLWAQIDGMPYAEIAERLDVSLSSVKQYMARAI 168 >UniRef50_Q52208 PupI protein n=1 Tax=Pseudomonas putida RepID=Q52208_PSEPU Length = 173 Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 102/152 (67%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H WL WL ++L + A D+AQDTF+R++ E + + PR+FL +A+ V+ + Sbjct: 15 LYRQQHSWLTRWLRQRLNCSQSAADLAQDTFIRLLNKEQVPQLHAPRTFLAKVAQSVLCN 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 +RR LE+AYLE LA++PE PS E + LETL LD+ LDGL REAFLLSQ+D Sbjct: 75 HYRRQKLERAYLEALAMLPEPVVPSLETQAILLETLIALDAALDGLERPVREAFLLSQVD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 GL ++EIA +L VS+++VK+Y+ KA C++ Sbjct: 135 GLGHTEIAQRLAVSVTTVKRYIIKAGALCIML 166 >UniRef50_C1DDL3 Sigma factor, FecI family n=3 Tax=Proteobacteria RepID=C1DDL3_AZOVD Length = 170 Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 109/160 (68%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T+ + +LY +H WL+ WL+R+LQ DA D+ QDTFLR + S L I++PR+FL Sbjct: 4 TSDPNALLATLYRENHRWLRGWLSRRLQCPQDAADLTQDTFLRALNSRQLEQIQEPRAFL 63 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 T+AKR++ +L+RR LE++YL+ LA +PE APS E+ E ++ +D +LDGL + Sbjct: 64 GTLAKRLLCNLWRRRQLERSYLDALAQLPERFAPSEEDIALVREAIEAIDRLLDGLPLRA 123 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 R AFLL++LDGL IA +LGVS+++V++ + +A HCL Sbjct: 124 RRAFLLNRLDGLGQQAIAERLGVSLATVERDLRRAYIHCL 163 >UniRef50_B0KPG3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Pseudomonadaceae RepID=B0KPG3_PSEPG Length = 168 Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 72/157 (45%), Positives = 109/157 (69%), Gaps = 4/157 (2%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS----TIRDPRSFLCTIAK 70 +Y H+GWLK WL R+L + A D+AQDTFLR++ ++ + +++ PR++L T+++ Sbjct: 8 QVYVEHNGWLKQWLYRRLGCSAQAADLAQDTFLRILQAQQKAGAKLSLQRPRAYLATVSR 67 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 R++ D FRR +LE+AYLEML +PE A S EE+ S ETLQ LD++LD R FL Sbjct: 68 RLVYDHFRRQSLERAYLEMLEQLPELFALSAEEQWSMRETLQQLDALLDTFKPVVRSVFL 127 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L QL+GLTY E+A +LG+ +VK+++A A++ C+LF Sbjct: 128 LVQLEGLTYIEVARRLGIGERTVKRHMANALQACILF 164 >UniRef50_D0J502 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Comamonas testosteroni RepID=D0J502_COMTE Length = 174 Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS---ETLST 57 M A + AS S+Y H+ WL SWL RKL + DA DIAQDTF R+ + + + Sbjct: 1 MPTHANSIASEALGSMYTLHNRWLISWLQRKLGNRCDAADIAQDTFTRIWTTARTQAIED 60 Query: 58 IRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSM 117 IR+PR++L +A+R+M++ R +LE+AYL L L+PE A S E R LETL+ LD++ Sbjct: 61 IREPRAYLTIVARRLMINHLERRSLEQAYLASLHLLPEATALSAEARAILLETLEELDAL 120 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L L K R AFLLSQL+GL Y EIA ++ VS+ +V +Y+A+ CL Sbjct: 121 LGELPTKVRTAFLLSQLEGLAYEEIATQMQVSVRTVTRYMAQGFRQCL 168 >UniRef50_A6SZL5 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Proteobacteria RepID=A6SZL5_JANMA Length = 178 Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/157 (45%), Positives = 105/157 (66%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 +S E LY H WL + L R+L S DA+D+ +TF +V+ ++ + I++PR+FL TI Sbjct: 18 SSSVIEKLYAEHQSWLLARLQRRLPSRADAEDVTSETFAQVVENKNPADIQEPRAFLTTI 77 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 AKRV+ L+RR LEKAYL+ L LMPE SPEER +E ++ +D LD L + A Sbjct: 78 AKRVLFHLWRRQDLEKAYLQSLMLMPEASVLSPEERAVLIEAIEQIDRALDSLPLPVKTA 137 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 FL S+LD LTY EIA +LGVS++++++Y+ +A+ CL Sbjct: 138 FLYSRLDRLTYPEIALRLGVSVATIERYMKRALLQCL 174 >UniRef50_D0J6Z4 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=cellular organisms RepID=D0J6Z4_COMTE Length = 146 Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 98/142 (69%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALE 83 ++ WL RK+ +AFDA D+ QDTF+R++ + PR++L T+AK V+V+ RR ALE Sbjct: 1 MQGWLRRKVGNAFDAADLTQDTFVRILGVREPPRLESPRAYLTTVAKGVLVNWCRRQALE 60 Query: 84 KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIA 143 +AYLE LAL+PE APSPE R LE L +D+MLD L R FLLSQL+ + Y +IA Sbjct: 61 RAYLEALALLPEPEAPSPEHRALVLEALHEIDAMLDALPPLVRRTFLLSQLEDMKYDDIA 120 Query: 144 HKLGVSISSVKKYVAKAVEHCL 165 +LGVS++SVK+Y+A A CL Sbjct: 121 SQLGVSLTSVKRYMALAFRQCL 142 >UniRef50_C6XBX6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBX6_METSD Length = 171 Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/153 (47%), Positives = 97/153 (63%), Gaps = 1/153 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTIAKRV 72 LY HHGWL WL R+L A D+AQDTF+RV+ + + +PR+FL IA + Sbjct: 10 HKLYNIHHGWLVEWLRRRLGCVHHAHDLAQDTFVRVLDKPLVIQGVHEPRAFLSRIAHGL 69 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 MVD FRR A+E+AYLE L +P S EER +E L +D+M GLN R AFLLS Sbjct: 70 MVDQFRRRAIEQAYLEALQHLPTRHMESAEERMMNIEALMRIDAMFAGLNPNIRTAFLLS 129 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 +L G+TY +IA ++ VS+ SV+ Y+AKA+ H L Sbjct: 130 RLHGMTYPDIAREMNVSLRSVEGYMAKAIGHLL 162 >UniRef50_A9C155 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Proteobacteria RepID=A9C155_DELAS Length = 159 Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 3/158 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS---ETLSTIRDPRSFLCTIAKRV 72 +Y H+ WL +WL R+L + DA D+AQDTF R+ S + + I++PR++L T+A+R+ Sbjct: 1 MYAQHNHWLVAWLQRRLDNRCDAADLAQDTFTRIWASARTQAIEDIQEPRAYLTTVARRL 60 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +V+ R +LE+AYL L L+P PS E R LETLQ LD++LD L K R AFL+S Sbjct: 61 LVNHLERRSLEQAYLASLHLLPPATVPSVEARAMLLETLQELDALLDALPAKVRMAFLMS 120 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 QL+G++Y +IA + +S+ +V +Y+A+ CLL LE Sbjct: 121 QLEGMSYEDIAAHMQLSVRTVTRYMAQGFRQCLLAMLE 158 >UniRef50_Q6FBE7 Alternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FBE7_ACIAD Length = 161 Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 67/150 (44%), Positives = 103/150 (68%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY HH W+ +WL R+L ++ DA D+AQDTF+RV+ ++L I PR++L T+AK +M++ Sbjct: 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 F R +E+AYLE+LA PE PSPE+R +ETL + +LD L + R+ FL +QL+ Sbjct: 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + Y +IA + +S+S+VK+++ KA HCL Sbjct: 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCL 151 >UniRef50_C3JY07 Putative RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3JY07_PSEFS Length = 180 Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 98/154 (63%), Gaps = 1/154 (0%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 T ++Y HHGWL WL +KL + A D+A D F+RV++ I++PR+FL T A R Sbjct: 16 TLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQNIKEPRAFLATTAGR 75 Query: 72 VMVDLFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 +++D RR +EKAYLE L + + G P P L+ L+ + ML GL REAFL Sbjct: 76 LLIDGARRRRIEKAYLEALVIQCADAGMPDPAAIHVALQALERIAEMLAGLPANAREAFL 135 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 LS+LDGLTYSEIA +L VS S+VK Y++ A+ HC Sbjct: 136 LSRLDGLTYSEIATRLDVSSSTVKNYISSALVHC 169 >UniRef50_A6SZM0 RNA polymerase sigma-70 factor, ECF subfamily n=4 Tax=Proteobacteria RepID=A6SZM0_JANMA Length = 186 Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 109/162 (67%), Gaps = 4/162 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAKR 71 +SLY H+GWL WL +KL A D AQDTF R++ V L+T++ PR++L T A R Sbjct: 22 LDSLYSEHYGWLYGWLRKKLACPHSAADFAQDTFFRLLSVPFELTTLQTPRAYLTTTATR 81 Query: 72 VMVDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 +M+D RR +E+AYLE LAL+ E + SPE+ +ETL L+ ML+ L K R+AF+ Sbjct: 82 LMIDETRRRKVEQAYLEALALLQDEVYSVSPEQHLETVETLTLIARMLEDLPEKPRQAFM 141 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 LS+LD L+Y EIA +LGVS S VK+Y+A+A+ HC +++ Y Sbjct: 142 LSRLDNLSYPEIAMRLGVSASMVKQYIARAMVHC--YQIAYA 181 >UniRef50_B1JF11 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida W619 RepID=B1JF11_PSEPW Length = 171 Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 72/157 (45%), Positives = 108/157 (68%), Gaps = 2/157 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY +HH WL+ WL ++ A D+AQDTF+R++ + +S I++PR++L +IA+ +M+D Sbjct: 15 LYQSHHAWLRGWLRSRVGCQEHAADLAQDTFVRLLRARQVSPIKEPRAYLSSIARGLMID 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 FRR ALE+AY E LA +P G PS E R L+ L+ LD L L + R+AFLL+QLD Sbjct: 75 QFRRRALERAYQESLAHVPAGEVPSEEHRLVILDALERLDRALHQLRPRARQAFLLAQLD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 GL+ ++IA +LGVS ++V++ +AKA+ C +RL Y Sbjct: 135 GLSIAQIALRLGVSRATVERDLAKALGVC--YRLRYA 169 >UniRef50_A4XVR2 RNA polymerase, sigma-24 subunit, ECF subfamily n=25 Tax=Pseudomonadaceae RepID=A4XVR2_PSEMY Length = 174 Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 102/151 (67%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H WL WL + L A+D++QDTF+R++ L + R+PR+ L TIA+ +++D Sbjct: 17 LYRDHRDWLFGWLRKSLNCTQRAEDLSQDTFVRLLGRPDLHSPREPRALLTTIARGLLID 76 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 FRR+ALE+AYLE LAL PE PSPEE+ LE L +D +L L+ K R AFL ++LD Sbjct: 77 QFRRSALERAYLEELALAPEALQPSPEEQALALEQLSEIDRLLGHLSSKARAAFLYNRLD 136 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 GL ++EIA +LGVS S V++Y+A+ + C + Sbjct: 137 GLGHAEIAERLGVSPSRVRQYLAQGLRQCYI 167 >UniRef50_Q82VL0 Probable sigma-70 factor, ECF subfamily n=2 Tax=Proteobacteria RepID=Q82VL0_NITEU Length = 178 Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 77/165 (46%), Positives = 106/165 (64%), Gaps = 2/165 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI--RDPR 62 AT A+ LY HHGWL WL KL +A DA D+A DTFLRVM S+ + +PR Sbjct: 13 ATDLAAHRIHVLYTDHHGWLYGWLRCKLGNACDAADLAHDTFLRVMASQRMPVHLGEEPR 72 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 + L IAK +++D +RR +E+AYLE LA +PE PSPE R LE L +++ML GL Sbjct: 73 ALLTHIAKGLVIDHWRRQDVERAYLEALAHLPETEIPSPETRLLILEALCRIETMLRGLP 132 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +TR+ FLL+QLDGLTY +IA + G S+ ++K+++ A CL+ Sbjct: 133 VRTRDIFLLAQLDGLTYRQIADQTGFSLITIKRHMRTAFVACLML 177 >UniRef50_Q88IB3 RNA polymerase sigma-70 factor, putative n=2 Tax=Pseudomonas RepID=Q88IB3_PSEPK Length = 168 Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 1/162 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRS 63 A + +L ++LY HHGWL+ WL RKL +A DA D+A DTF+R++ + +PR+ Sbjct: 4 AEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRA 63 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 L IAK ++VD +RR +E+AYLE +A +P+ PSPE R LETL +D+ML + Sbjct: 64 LLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPA 123 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + R+ FLLSQLDGLTY++IA +L VS+ ++K+ + A CL Sbjct: 124 RVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACL 165 >UniRef50_A6SXC6 RNA polymerase sigma-70 factor, ECF subfamily n=8 Tax=Proteobacteria RepID=A6SXC6_JANMA Length = 190 Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKR 71 +LY HHGWL WL +KL AF A+D+A DTFLR++V L + DPR++L IA+ Sbjct: 26 MHTLYSNHHGWLHGWLRKKLGCAFQAEDLAHDTFLRLIVRPRQLDSAYDPRAYLTKIAQG 85 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++VDL+RR +E+A+L LA PE PS E + +ETL +D +L L K R A LL Sbjct: 86 LVVDLWRRQEIERAWLATLAAHPESVVPSAEHQAIIIETLIEVDRLLAQLPEKPRRALLL 145 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + L +TY+EIA L VS VKKY+A+A+ HCLL Sbjct: 146 AHLHDMTYAEIAQVLDVSERMVKKYMAQAMLHCLL 180 >UniRef50_C3K1F8 Putative iron-related RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K1F8_PSEFS Length = 172 Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 70/167 (41%), Positives = 107/167 (64%), Gaps = 3/167 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MS + T A +++Y HH WL WL KL +A DA D+A DTF+R++ + I + Sbjct: 5 MSPSSHTAA---VQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQIVE 61 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR +L TIA+ +++D +RR+A+E+AY + LA PE A S E++ LETL +D L Sbjct: 62 PRDYLATIARGLVIDRYRRHAIEQAYKQTLAERPEANAISEEDKAIILETLVAVDKALSA 121 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L + R F+LSQ++GLTY +IA +L VS+++VKK++ +A+ C L Sbjct: 122 LGERARRIFMLSQIEGLTYQQIADQLQVSLTTVKKHMIRALTECSLI 168 >UniRef50_C6DBT2 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Pectobacterium RepID=C6DBT2_PECCP Length = 173 Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/151 (45%), Positives = 104/151 (68%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 ++ + + WL L R++ +A+D+A + FLR+ L+ +++PR+ L T+AKRV+ + Sbjct: 15 IFRSDYRWLTEKLRRRIAYGCEAEDVASEAFLRLASLPNLANVQEPRAMLTTLAKRVLYE 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 +RR LEKAYL LA PE PSPEE++ +E L +D LDGL+ K R+AFL SQLD Sbjct: 75 NWRRRDLEKAYLTALASKPEFHHPSPEEQQLLMEALLTIDQALDGLSIKARQAFLFSQLD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 G+TY++IA +L VS+S V+KY+AKA+ +C L Sbjct: 135 GMTYADIAVQLDVSVSMVRKYIAKALTNCYL 165 >UniRef50_B7X446 Transcriptional regulator, LuxR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X446_COMTE Length = 187 Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 103/156 (66%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 + L+ HH WL S L +L++ +A D+A +TFLRV+ + I +PR+FL TIAKR++ Sbjct: 18 QQLFTGHHAWLLSRLKARLRNTAEAQDVASETFLRVVAAPNPVPIDEPRAFLTTIAKRLL 77 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 L+RR LE+AYL+ ++ P APSPEER LETL + LDGL+ K R+ FLLSQ Sbjct: 78 FTLWRRRELEQAYLQAMSESPPEQAPSPEERALLLETLDTIAHALDGLSLKARQTFLLSQ 137 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 LDGLTY IA +L +S S+V++++ +A + +L Sbjct: 138 LDGLTYHAIAEQLDISHSTVRRHMTEAFRRIAIAQL 173 >UniRef50_Q1GXU3 Sigma-24 (FecI-like) n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXU3_METFK Length = 179 Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 68/171 (39%), Positives = 107/171 (62%), Gaps = 2/171 (1%) Query: 1 MSDRATTTASLT-FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTI 58 + D T ++ E LY H GWL +WL KL + A D+ QDTF+RVM + + ++ + Sbjct: 8 IQDECKTEMTICHVEQLYSHHRGWLHNWLRGKLGCSEQAADLVQDTFIRVMAARSNIANL 67 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 PR++L +IA+ +++D +RR LE+AYL ++L+PE PSPE+ E L+ +D +L Sbjct: 68 DQPRAYLSSIARNLVIDHWRRKELEQAYLAAISLLPEQEVPSPEQSLLVFEALEQVDKVL 127 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L TR+ FLLSQLDG+TY+ IA +L S+ ++K+++ KA C+ L Sbjct: 128 QSLPPATRQVFLLSQLDGMTYAAIAEQLDCSVPTIKRHMHKAFFACMQVEL 178 >UniRef50_B0KJM4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KJM4_PSEPG Length = 170 Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 E+LY H GWL + L R+L +A DA D+ QDTF R++ S+T+ +PR++L +A Sbjct: 14 NVEALYNGHQGWLHARLRRRLGNAVDAADLVQDTFARILASKTV-VFDEPRAYLSCVAGG 72 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ + +R +LE+AYL+ L +PE PSPE R LETL +D+MLD L R AFLL Sbjct: 73 ILANWCQRKSLERAYLKALEHLPEPEVPSPEARLLILETLHEIDAMLDTLPPLVRRAFLL 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 SQL G+ Y+ IA +LGVS+ ++K+Y+ +A CL Sbjct: 133 SQLGGMKYAAIAEQLGVSLITIKRYMKQAFLQCL 166 >UniRef50_B9P6N4 Predicted protein n=8 Tax=cellular organisms RepID=B9P6N4_POPTR Length = 188 Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET--LSTIRDPRSFLCTIAK 70 +LY HHGWL+ WL R+L +A DA D+AQDTF+R++ + L +R+PR++L T+A+ Sbjct: 30 ISALYVGHHGWLQGWLRRRLGNACDAADLAQDTFIRLLTAPAGDLPALREPRAYLATVAR 89 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 R++++ RR +LE+A+L+ LA +P APSPE++ L+ LQ +D+MLDGL K R F+ Sbjct: 90 RLLINHLRRQSLEQAWLQALAALPAPQAPSPEQQLLILQALQEVDAMLDGLPPKVRAVFI 149 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 LSQ++GLTY+ IA +LG+ + SVK+Y+A+A+ C+L Sbjct: 150 LSQVEGLTYAAIAEQLGMGLRSVKRYMAQAMAECILL 186 >UniRef50_Q1LG57 Sigma-24 (FecI-like) n=2 Tax=Burkholderiaceae RepID=Q1LG57_RALME Length = 169 Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 97/152 (63%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 ++LY HH WL WL RK+ + D+A DTF+R++ E I +PR+FL T+A+RV Sbjct: 11 IQALYSCHHRWLLGWLHRKIGCWHRSADLAHDTFMRLLAREEALAIAEPRAFLTTVAQRV 70 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 + + +RR LE+AYLE LA P APS EER LETL + LDGL + AFL++ Sbjct: 71 LANQWRREKLEQAYLEALASRPAALAPSEEERAILLETLNDIAERLDGLPVVVKRAFLMA 130 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 QL+G + +EIA L +S+++VK+Y+ +A C Sbjct: 131 QLEGQSQAEIASALRISVTTVKRYLVRAGTKC 162 >UniRef50_B4SLV1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Stenotrophomonas RepID=B4SLV1_STRM5 Length = 174 Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 98/160 (61%), Gaps = 1/160 (0%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFL 65 +S Y HHGWL WL R+ +A A D+ QDTF+R++ S +R PR++L Sbjct: 7 AASSTALAGFYREHHGWLLGWLRRRTHNADCAADLTQDTFVRLLGRRVDPSELRLPRAYL 66 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 TIA ++V+ ++R LE+AYL LA PE PS EER L+ L + ML GL + Sbjct: 67 STIAHALLVNHWQRADLERAYLTALAAQPEPVHPSAEERTQALQLLHAIADMLSGLAERP 126 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 R AFL+++L GL Y+EI +LGVS VKKY+A+A+ HCL Sbjct: 127 RRAFLMARLSGLGYAEIGQQLGVSERMVKKYMAQAMLHCL 166 >UniRef50_B3PJT7 Probable fecI Specialized sigma subunits of RNA n=2 Tax=Proteobacteria RepID=B3PJT7_CELJU Length = 170 Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/150 (43%), Positives = 98/150 (65%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY HHGWL +WL R++ + +A D+AQDT++R++ S + R +L IAK +++D Sbjct: 12 LYSDHHGWLYAWLRRRMGCSHNAADLAQDTYVRLLNSGRFPSQDQARPYLLQIAKGLVID 71 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 RR +E+AYL+ LA PE APSPEE +E L +DS L L RE FLLS+ + Sbjct: 72 RHRRRLIEQAYLDALASQPETLAPSPEETALVVEVLVRIDSALARLKPVVRETFLLSRFE 131 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 GLTY EIA +L +++++V+KY+ A++ C+ Sbjct: 132 GLTYREIALRLDIAVATVRKYMLMAIQSCM 161 >UniRef50_B0KPE9 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Proteobacteria RepID=B0KPE9_PSEPG Length = 175 Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 3/163 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRS 63 A + + E LY HHGWL SWL RKL+ + A D+AQDTF+R++ S + L +R+PR+ Sbjct: 4 ADSPSPYPLEQLYSEHHGWLFSWLRRKLRCSHSAADLAQDTFVRILASRDALLGMREPRA 63 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGL 121 +L T A+R+++D RR +E+AYL LAL E G PE LE L+ + +L+GL Sbjct: 64 YLSTTARRLLIDQARRRQIEEAYLSELALTAELLEGHQPPENILITLEALEQIAFLLEGL 123 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 + REAF+ LD LT +IA +L +S V+KY+A+A+ HC Sbjct: 124 HVNAREAFVGYYLDELTQPQIAQRLQISPRMVRKYLAQALIHC 166 >UniRef50_B1KAJ1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KAJ1_BURCC Length = 183 Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 104/167 (62%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + D T + + S + + WLKS L R++ S DA+D+A +F + + L+ +RD Sbjct: 16 VDDERTRSRAAWLTSEFRASYAWLKSKLQRRVGSPADAEDLASSSFAELAGMQDLTAVRD 75 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 R+FL IA+R+ +++RR LE+AYLE LA E PS E + L L+D L+G Sbjct: 76 ARAFLTVIAQRLTYEMWRRRDLERAYLETLAHREEAVTPSAESMAEVTQALLLVDQALNG 135 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L+ + AF++SQ+DGLT++EIA +LGVS+S V+KY+A+A+ C L Sbjct: 136 LSPNAKSAFIMSQIDGLTHAEIAERLGVSVSMVRKYIAQALTQCYLM 182 >UniRef50_Q88Q31 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas putida KT2440 RepID=Q88Q31_PSEPK Length = 178 Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 1/167 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRS 63 + E LY +HHGW++ WL RKL +A DA ++AQD F+R++ + R+ Sbjct: 6 SAPAPGFDLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHARA 65 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L +++ VD +RR +E+AYLE+LA PE APS E + LETL+ L +M + + Sbjct: 66 YLGRMSRNACVDFWRRRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQ 125 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + EAF ++QL G+ EIA +LGVS SV Y+A+A+ CLL E Sbjct: 126 RVAEAFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQCLLLEAE 172 >UniRef50_A5VWU6 RNA polymerase, sigma-24 subunit, ECF subfamily n=14 Tax=Pseudomonas RepID=A5VWU6_PSEP1 Length = 173 Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 75/170 (44%), Positives = 113/170 (66%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 M ++ ++ + ++LY HHGWL +WL KL +A DA D+AQDTF+R++ + Sbjct: 1 MPAPSSMPSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNA 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR+FL T+A+ +++D +RR L +AYLE LA +PE APS E RE LE L+ + MLDG Sbjct: 61 PRAFLRTVARGLVIDHWRREELHRAYLEALAHVPEALAPSVETRELLLELLERIARMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L K R AFLL+Q +GL + IA ++G+S+ +V++Y+A A+ HC + R E Sbjct: 121 LKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYVLRYE 170 >UniRef50_Q4KBG5 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonadaceae RepID=Q4KBG5_PSEF5 Length = 177 Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 5/162 (3%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD---PRSFLCTI 68 + SLY HH WL L R+L A+DA D+A D F+RV+ + +RD RS+L T+ Sbjct: 11 SVHSLYDAHHRWLYELLRRRLNHAWDAADLAHDIFVRVL--KRPPVLRDEVHQRSYLATV 68 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+ + +D +RR LE+A+L+ LA P+ PS E++ +ETL +D+ML L K R A Sbjct: 69 ARGLCIDHWRRRQLEQAWLQALAARPQAVQPSAEQQAIIVETLYEVDAMLSRLPAKVRSA 128 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 F+L+QL G Y IA +LGVS VKKY+A+A+ HC L E Sbjct: 129 FILAQLHGRPYQAIADELGVSERMVKKYLAQALLHCALLEAE 170 >UniRef50_D1ST93 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1ST93_9BURK Length = 171 Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/152 (42%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKRVM 73 +LY HHGWL +WL RKL A D+A DTFLR++ + T L T+R+PR++L T A+R++ Sbjct: 14 ALYCEHHGWLLAWLRRKLGCGHQAADVAHDTFLRILGTPTVLPTLREPRAYLVTTARRLL 73 Query: 74 VDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +D RR +E+AYL+ LA++ G PS E+ ++ L +++ L L+ + ++AFLL Sbjct: 74 IDEARRRVIEQAYLDALAVVAGTDGGPSTEQVVETIQALVRIEAALQDLSARAQQAFLLH 133 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L+GL ++E+A LGVS V+KY+ +A+ C Sbjct: 134 YLEGLPHAEVAAALGVSTRMVQKYLVQALVCC 165 >UniRef50_Q4KDP7 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas RepID=Q4KDP7_PSEF5 Length = 171 Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 94/153 (61%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 LY H WLK+WL +L + A D+AQDTFLR++ I+ PRSFL +A+ V+ Sbjct: 12 QLYRQQHQWLKNWLRLRLNCSHSAADLAQDTFLRLLAKPEPVQIQAPRSFLAKVAQSVLS 71 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 + +RR LE+AYLE L +P P E + LETL LD++L+ R+AFL QL Sbjct: 72 NHYRRQKLERAYLEALQHVPAHVVPDLETQAILLETLMQLDAVLERQEPAVRQAFLWWQL 131 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +GL + +IA +L VS+++VK+Y+ KA C+L Sbjct: 132 EGLGHEQIAERLQVSVTTVKRYIIKAGAQCILL 164 >UniRef50_A6VD05 Probable sigma-70 factor, ECF subfamily n=9 Tax=Proteobacteria RepID=A6VD05_PSEA7 Length = 178 Score = 128 bits (321), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFD--ADDIAQDTFLRVMVSETLS---TIRDPRSFLC 66 + +LY +H WL+ WL +L+S ADD+AQDTFLR++ S + IR PR++L Sbjct: 14 SVATLYLENHAWLRGWLAYRLRSWGREVADDLAQDTFLRILASHDAAQREAIRQPRAYLT 73 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 IA V+V RR +LE A+LE LA +PE PSPE++ +ETL +D++LD L + + Sbjct: 74 RIATCVLVSWRRRQSLELAWLEALATLPEPLQPSPEQQSVIVETLHEIDALLDTLRPRVK 133 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 +AFL++ LDG+ +IA L V++ +VKKY+ + CL Sbjct: 134 QAFLMATLDGMRQKDIAEALDVALPTVKKYIHQGFLTCL 172 >UniRef50_C6X947 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X947_METSD Length = 174 Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 E LY HH WL+ WL +KL A A DIAQDTFLR+M S L +++PR+FL A R++ Sbjct: 14 EMLYTQHHSWLQGWLRKKLGCAHGAADIAQDTFLRLMASRDLLLLQEPRAFLTRTATRLL 73 Query: 74 VDLFRRNALEKAYLEMLAL-MPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +D R +E YLE LA + + AP P + + L L S+L+ L K REAFL++ Sbjct: 74 IDDARHKKIEALYLEELAAQLEQAHAPDPAKILEAVRALAYLVSVLETLPQKPREAFLMA 133 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 QL+ L + EIA +L VS V+KY+ +A+ HC Sbjct: 134 QLEELGHDEIARRLSVSTRMVRKYLVQALVHC 165 >UniRef50_A1BCE5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCE5_PARDP Length = 166 Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/153 (41%), Positives = 92/153 (60%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 +LY HHGWL WL RKL + DA D+A DTFLR++ S PR+ L IAK + Sbjct: 11 LHALYADHHGWLHGWLRRKLGDSGDAADLAHDTFLRLLASRRSRLGERPRALLTHIAKGL 70 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 + D +RR +E+AYL+ +A +P P EER +E L +D+ML L TRE FLL+ Sbjct: 71 LADHWRRQRVERAYLDTIAHLPAVQVPPAEERLLVIEALTRIDAMLGRLPAFTREVFLLA 130 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 Q DGLT +I+ + + +V++++ KA+ C+ Sbjct: 131 QFDGLTLQQISERTQAPVITVRRHIRKALLACM 163 >UniRef50_B7VA10 Probable sigma-70 factor, ECF subfamily n=6 Tax=Pseudomonas RepID=B7VA10_PSEA8 Length = 169 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 102/162 (62%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D + + L+ ++ WL L+ + + A+D+A + FL+V + ++IR PR Sbjct: 2 DSQGSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPR 61 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +FL TIA+R+M + +RR LE+AYL++LA PE PSP E+ +E+LQ +D +LDGL+ Sbjct: 62 AFLATIAQRLMYESWRRKDLERAYLQILAEAPEAVQPSPHEQWMLIESLQAIDRLLDGLS 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 G+ R FL+SQL+GLTY +I +LG+S+ + + + A+ C Sbjct: 122 GQARAVFLMSQLEGLTYVQIGERLGLSLGRIHQLMKDALHCC 163 >UniRef50_Q2L0R0 RNA polymerase sigma factor n=1 Tax=Bordetella avium 197N RepID=Q2L0R0_BORA1 Length = 163 Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTI 68 S +++ H+ WL W R+L A +A D+A DTFLRV+ E +S +R PR++L I Sbjct: 2 SNPLQAVCEDHYVWLCQWWRRRLDHADEAADLAHDTFLRVLRKPEEISCLRQPRAYLTPI 61 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+ ++ D +RR +LE+A+LE LA +P +P+ + LQ LD ML L + RE Sbjct: 62 ARGLLNDHWRRRSLERAWLEALAQLPPEYEIAPDMLLQMQQALQHLDDMLAALAPRAREV 121 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 F+LSQL+GL+Y++IA + G++ +VK+Y+A++ EHCL Sbjct: 122 FVLSQLEGLSYAKIAAQTGLNERTVKRYMAQSFEHCL 158 >UniRef50_B0KLJ1 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Pseudomonas putida GB-1 RepID=B0KLJ1_PSEPG Length = 168 Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRS 63 +T+T L F + HH WL + ++L++ DA+D A +TF +++ + +I+ PR+ Sbjct: 3 STSTRKLGF--FFSDHHRWLLQHIHKRLRNHADAEDTAAETFCQMLGARVDPDSIQQPRA 60 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L IA+R++ D RR LE AYLE LA +PE APS EE+ +E L +D LDGL Sbjct: 61 YLTIIARRLIFDRHRRRQLEHAYLEHLARLPEAVAPSAEEQLLLIEALVTIDQALDGLPA 120 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + FL SQLDG+ Y++IA KL +S SV +Y+ +A+ C L ++ Sbjct: 121 VVKATFLYSQLDGMHYADIAAKLQISERSVSRYMKQALRQCYLCEVQ 167 >UniRef50_A9IDD4 RNA polymerase sigma factor n=6 Tax=Proteobacteria RepID=A9IDD4_BORPD Length = 200 Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 3/160 (1%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP---RSFL 65 +S ++LY HH WL++WL R+L +A DA D+A + FLR+++ P R++L Sbjct: 24 SSPPIDTLYADHHAWLRAWLQRRLGNAADAADLAHEAFLRLILKPASRGFGSPLEARAYL 83 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 +A+ + ++L+RR +E+A+L+ LA P APS E + LE LQ + +L L GK Sbjct: 84 RAMAQGMCINLWRRREIEQAWLDTLAAQPPAYAPSAERQAMVLEALQEIAELLHSLPGKA 143 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 +AFL+S + G+T +++ +LGVS V+KYVA+A+ C+ Sbjct: 144 AQAFLMSAVCGMTAADVGGELGVSSRMVRKYVAQAMLRCM 183 >UniRef50_C6DKM4 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Proteobacteria RepID=C6DKM4_PECCP Length = 180 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 1/167 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRS 63 A S LY HHGWL+ L ++L + DA D+AQD F+R+++ + R+ Sbjct: 4 ANIDTSADMHQLYCQHHGWLQGLLRKRLGNLCDAADLAQDVFVRLLLKPRQFDSHAGARA 63 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L +A+ + VDL+R+ +E+ +L LA PE A S E+ LETL +D+ML L Sbjct: 64 YLSVMAQGMCVDLWRKREIERVWLASLAEQPEPVALSAEDSNIILETLYQVDAMLRALPE 123 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 K R AF+++Q+ G Y +IA LGVS VKKY+A+A+ HC+L E Sbjct: 124 KVRAAFIMAQVQGRPYRDIAEALGVSERMVKKYMAQAMLHCVLLEAE 170 >UniRef50_A6W1Y2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1Y2_MARMS Length = 172 Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKRVMV 74 LY H WL W+ +L A DIAQDTF+R++ + S + + R+FL TIAK + + Sbjct: 14 LYAEHSSWLTGWIRSRLGCHELAADIAQDTFVRLLKRPKYFSNMGEARAFLSTIAKGLYI 73 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 D +RR +E+A+LE LA E PS E S +E L LD+M+ L K +LSQL Sbjct: 74 DHWRRKQVEQAWLESLAHCDEEFVPSAEHSASMIELLCELDAMIAKLPKKVANTLILSQL 133 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 GLTY EIA +L VS VK+Y+A+A+ CLLF+ Sbjct: 134 HGLTYREIAERLSVSERMVKRYMAQAMLQCLLFK 167 >UniRef50_A6T0J3 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. Marseille RepID=A6T0J3_JANMA Length = 126 Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 57/112 (50%), Positives = 79/112 (70%) Query: 54 TLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQL 113 T + +R+PR++L T+A +MVDLFRR +LE+AYL+ LA +PE SPEER LE L Sbjct: 11 TAADVREPRAYLRTVANGLMVDLFRRRSLEQAYLDALATLPEASVASPEERMLVLEALHS 70 Query: 114 LDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 LD+MLD L K R FL+SQL+GLTY+ IA +LG+S+ +VK+++ CL Sbjct: 71 LDAMLDTLPAKVRTVFLMSQLEGLTYAAIAEQLGISLRTVKRHMQLGFAQCL 122 >UniRef50_Q13G71 Sigma-24 (FecI) n=3 Tax=Burkholderiaceae RepID=Q13G71_BURXL Length = 178 Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 61/145 (42%), Positives = 94/145 (64%) Query: 21 HGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN 80 + WLKS L RK+ F A+D++ + F+++ + IR+PR+ L TI++R++ D +RR Sbjct: 30 YDWLKSRLWRKVGCPFVAEDLSSEAFVQLAEVPDIRAIREPRALLTTISQRLVFDFWRRR 89 Query: 81 ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYS 140 LE+AYL LA PE A S +E ++ L +D L GL K ++AF+ SQLDG+TY+ Sbjct: 90 DLEQAYLRELAYAPEAVACSEQETHEMVQLLIEIDRRLSGLPEKVQQAFMYSQLDGMTYA 149 Query: 141 EIAHKLGVSISSVKKYVAKAVEHCL 165 EIA L VS+S V +Y+ KA++H + Sbjct: 150 EIASLLDVSVSMVGQYMTKALKHLM 174 >UniRef50_C6CDZ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDZ4_DICDC Length = 179 Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 5 ATTTASLT-FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPR 62 A TAS + + LY HHGWL+ L ++L + DA D+A D F++++ + R Sbjct: 3 AVNTASPSDLQQLYQQHHGWLQGLLCKRLGNLCDAADLAHDIFVQLLTRPRHFDSHEGAR 62 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 ++L +A+ + VDL+RR +LE+A+ + L + A S E+ LETL +D+ML L Sbjct: 63 AYLSVMAQGLCVDLWRRRSLEQAWRQSLNDCEQVHALSAEQHTIILETLYQVDAMLRQLP 122 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R AF+LSQ+ G TY++IA LGVS VKKY+A+A+ HC+L E+ Sbjct: 123 DNVRVAFILSQIQGQTYAQIAITLGVSERMVKKYMAQAMLHCILLEAEH 171 >UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma subunit n=5 Tax=Acinetobacter RepID=B2HV64_ACIBC Length = 178 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 MS A SL + LY +H WL WL +KL + A D+ QDTF++++ + + L I+ Sbjct: 1 MSPIAVNKTSLLVDQLYRSHQSWLHQWLRQKLGNTDQAADLVQDTFIKLLQTRDELFGIK 60 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSM 117 +PR++L +IAK +++D RR +E+AYL+ L+ M SPE++ ++ + L Sbjct: 61 EPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQMEYMLDAVASPEDQMQIIQAINQLCKA 120 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L+G+ K ++AF+L L+G T+ EIA +L VS ++KY+A + C Sbjct: 121 LEGVCEKAQQAFILHYLEGYTHKEIAERLNVSTKMIQKYLASCLIQC 167 >UniRef50_Q1IAL3 Putative RNA polymerase sigma-70 factor n=1 Tax=Pseudomonas entomophila L48 RepID=Q1IAL3_PSEE4 Length = 175 Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 92/165 (55%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D+ + E LY HHGWL + L RKL +A DA D+A D L ++ + +D R Sbjct: 2 DKGSFALRQQLEQLYVDHHGWLCNLLRRKLGNACDAADLAHDICLILLNKGCVPAAQDCR 61 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 L IA ++DL+RR LE YL+ L E APS E R LE L +D+ L + Sbjct: 62 RHLAQIANGKVIDLYRRRQLEARYLDELMQRDEALAPSEEIRALALEALVEVDAALQRQS 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +R A LL +L+G+ + EIA +L VS+SSV+KY+A A+ C F Sbjct: 122 ANSRRALLLHKLNGMAHREIATELKVSVSSVEKYIASALRSCSPF 166 >UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNT9_9GAMM Length = 189 Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 100/163 (61%), Gaps = 3/163 (1%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIA 69 + + LY H GWL WL +K+ S+ A D+ QDTF++++ + + L +++P+++L +IA Sbjct: 22 ILVDELYRNHSGWLHHWLRKKIGSSEQAADLVQDTFIKILQTRDELLGVKEPKAYLTSIA 81 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 K +++D RR +E+AYL+ L+ M SPEE+ ++ + L L+ ++ K ++ Sbjct: 82 KNLLIDQVRRKRIEQAYLDGLSEMEYMLDAVISPEEQVQIIQAIHQLCKALEAVSEKAQQ 141 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 AF+L L+G T+ E A KLGVS ++KY+A + C R++ Sbjct: 142 AFILHYLEGYTHKETAEKLGVSTKMIQKYLASCLVQCYQTRMD 184 >UniRef50_C6X945 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Betaproteobacteria RepID=C6X945_METSD Length = 175 Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 95/151 (62%), Gaps = 2/151 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H GWL WL +KL A DI+ DTF R++ + L IR+PR++L A R+M++ Sbjct: 16 LYRHHQGWLMGWLRKKLGCPHHAADISHDTFSRLLALDNLPDIREPRAYLLVTANRLMIN 75 Query: 76 LFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETL-QLLDSMLDGLNGKTREAFLLSQ 133 FR+ +E+ L+ +AL+ + + SPE S + L Q+L + + L+ K R A LL++ Sbjct: 76 EFRKRQVEQETLQAVALLNADDSSHSPETICSARQLLAQVLLMLSEELDEKARRALLLAR 135 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +DGL Y EIA + VS SSVK+Y+++A+ HC Sbjct: 136 VDGLGYREIAATMQVSESSVKQYLSRALVHC 166 >UniRef50_C4SII1 DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=2 Tax=Yersinia RepID=C4SII1_YERMO Length = 172 Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 8/157 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 + + Y H GWL+ WL +K+ A D+ DTF++++ S IR PR++L A V Sbjct: 8 WSTFYLAHQGWLRGWLRKKVGCHHSAADLTHDTFIKLLTMADPSVIRQPRAYLMVTANHV 67 Query: 73 MVDLFRRNALEKAYLEMLALMP-EGGAPSPEERE--SQL--ETLQLLDSMLDGLNGKTRE 127 M+D FR+ LE+ L LA M E S EER SQL + +Q+L S L+ + Sbjct: 68 MIDQFRKRKLEQDALVALAQMAEETHEQSAEERAAVSQLVAQAVQILASELEDHVCR--- 124 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 AFL+++++G +YSEIA LGVS SSVK+Y+AKA+ HC Sbjct: 125 AFLMARVEGYSYSEIAEVLGVSESSVKQYLAKALIHC 161 >UniRef50_Q6FD19 Putative RNA polymerase sigma factor n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FD19_ACIAD Length = 171 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 92/149 (61%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H+GWL WL +KL SA +A+D+ QDTF +++ S+ L I+ P+++L T AKR+++D Sbjct: 15 LYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILID 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 R +E++YLE LA SPE+ ++ L L +LDGL + + AFL+ +D Sbjct: 75 RARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHYID 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 GL+ +IA +L V+ ++ + K + HC Sbjct: 135 GLSLVDIATRLKVTSRTIHYDLVKTLSHC 163 >UniRef50_A4STR8 RNA polymerase sigma factor FecI n=3 Tax=Gammaproteobacteria RepID=A4STR8_AERS4 Length = 172 Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 93/162 (57%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 +R + +++LY +HGWL L RKL +++DA D+A D +L ++ + + R Sbjct: 2 EREACSLQEQWQTLYRDNHGWLCRLLRRKLGNSYDAADLAHDIYLHLINKGHIPAASESR 61 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +L IAK ++DL+RR +LE YLE P PS E R E L +D L Sbjct: 62 RYLMQIAKGKLIDLYRRRSLEARYLERQTQQPALREPSEETRALMREALGAVDMALQRKP 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 K R+A LLS+L+G+ Y +IA +L VS+SSV+KY+A ++ C Sbjct: 122 PKIRQALLLSRLNGMGYQDIATELQVSVSSVEKYIALGLQTC 163 >UniRef50_Q3K822 Putative RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3K822_PSEPF Length = 181 Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 93/151 (61%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 +L+ H+ WL + L R+ A A+DIA +TF +++ + L+ IR+PR+ L TIA+R++ Sbjct: 13 NTLFRDHYQWLCTRLRRQSNDAATAEDIAAETFAQLLETPGLTAIREPRALLTTIAQRLL 72 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 + +RR LE+ +L L PSPEE ++L+ LD L L GK R FLL++ Sbjct: 73 YERWRRGDLERRHLHQLQQGDLDHPPSPEELADLSQSLKHLDRTLQRLPGKVRSTFLLAR 132 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +DGLTY +IA +LG+S SV +Y+ ++ C Sbjct: 133 IDGLTYPQIAAELGISQRSVSQYMTRSQALC 163 >UniRef50_D0S2J0 Putative uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2J0_ACICA Length = 173 Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 92/154 (59%), Gaps = 1/154 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTIAKR 71 F +Y + L SW KLQ ++D++Q+ F R + SE + I++P+++L IAK Sbjct: 16 FSQIYRSQQTTLLSWFKHKLQHHHQSEDLSQEVFYRALKSEYSFKQIKEPQAWLMGIAKH 75 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 V++D +RR +E YL+ L +PE PS E ETL + +L+ L +T + FL+ Sbjct: 76 VIIDHWRRQHIENLYLDALQHLPEEYYPSAEHEVYIQETLYQVHLILEKLPTRTAQVFLM 135 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 SQLDG+TY EI+ K+ +S ++VK+ + +A C+ Sbjct: 136 SQLDGMTYREISEKINISEATVKRDMKQAFLACI 169 >UniRef50_D0KIJ0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KIJ0_PECWW Length = 173 Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 2/153 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 + Y TH GWL+ WL +K+ ADD+ DTFL+++ S IR P+++L A V Sbjct: 8 WSDFYQTHQGWLRGWLCKKMGCIHQADDLTHDTFLKLLTLADPSAIRQPKAYLMVTANHV 67 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETL--QLLDSMLDGLNGKTREAFL 130 M+D FR+ LE+ L LAL+ +G E + L L + L+ K + AF+ Sbjct: 68 MIDQFRKRKLEQDALSALALLVDGEEEQSAEYRVAISQLVATALHILTHELDEKVQRAFI 127 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 +++++G Y IA L VS SSVK+Y+AKA+ H Sbjct: 128 MARVEGYDYRTIAETLHVSESSVKQYLAKAMVH 160 >UniRef50_B1ZHY5 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Methylobacterium RepID=B1ZHY5_METPB Length = 172 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 90/150 (60%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 T + L+ H WL WL R+ + ++D+A D F ++ L + PR+ + TIA+R Sbjct: 12 TLDRLFRMHSSWLTGWLNRQRWTVHSSEDLASDVFCALLAIPNLDAVSQPRAMMTTIARR 71 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ D RR+ L ++Y L +PE S EER ++ LQ +++ML L+ K R AFL Sbjct: 72 LIYDARRRDDLRRSYESELMALPEALEISAEERLILIQALQAVEAMLSTLSYKARIAFLR 131 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 SQ+ G Y+EIA +LGVS+S V+KYVA+ + Sbjct: 132 SQMQGTPYAEIADELGVSVSMVRKYVAQGL 161 >UniRef50_B6IXY1 RNA polymerase sigma-70 factor. ECF family protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IXY1_RHOCS Length = 170 Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 86/152 (56%), Gaps = 5/152 (3%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H GWL WL R+ + A D+A DTF R++ + +PR FL T+A+R++VD Sbjct: 13 LYAAHGGWLCDWLRRRTRCPERASDLAHDTFCRLLERGRSALPLEPRPFLATVARRLLVD 72 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD---GLNGKTREAFLLS 132 RR +E+AYL++ A + G E E QLL +L L TR AFLL Sbjct: 73 DIRRREVERAYLDVCA--AQAGDADLLTPERIAEATQLLAGILQLLWELPDLTRRAFLLR 130 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +L+G ++EIA LGVS +VK+++A A HC Sbjct: 131 RLEGQGHAEIAAVLGVSERTVKRHIAAAYAHC 162 >UniRef50_B4RFZ0 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RFZ0_PHEZH Length = 183 Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 10/153 (6%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 ++ Y H GWL ++L R+ SA DA+D+AQ+TF+R ++ T+R+PR FL +A RV Sbjct: 36 LDAAYRDHAGWLVAFLRRRF-SARDAEDLAQETFVRAAGAQV--TLRNPRGFLARVALRV 92 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 + D RR A + PE AP P Q E + LL ++ L K RE FLLS Sbjct: 93 VQDDARRQAARPTF------APEDAAPDPATDPDQAEAV-LLKEVVLSLPPKLREVFLLS 145 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + GLTY EIA + +S+ +V+ + +A+ C+ Sbjct: 146 RFHGLTYEEIARRCNLSVKTVEARMTRALAMCV 178 >UniRef50_B7UW20 Probable sigma-70 factor, ECF subfamily n=12 Tax=Bacteria RepID=B7UW20_PSEA8 Length = 175 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 5/153 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y HG L +L + L S+ DA D+AQDTF + + ++ PR+FL IA+ ++ D Sbjct: 13 YQAFHGELLRFLRKHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72 Query: 77 FRRNALEKAYLEMLALMPE-----GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +RR L+ A E G A P ER Q + L L + L L + REAF+L Sbjct: 73 WRRQQSRGQDLDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVL 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 + DGL+ E+A ++G+S+S V+K++A A+ HC Sbjct: 133 HKFDGLSQVEVAERMGISLSMVEKHIASALLHC 165 >UniRef50_B7KZS3 RNA polymerase, sigma-24 subunit, ECF subfamily n=7 Tax=Rhizobiales RepID=B7KZS3_METC4 Length = 180 Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 8/172 (4%) Query: 5 ATTTASLTFESLYGTHHGW-LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 A A ++ ++LY H G L+ +L R L + DA D +Q+T+LR++ + + ++I P + Sbjct: 9 AGGAAGVSIDALY-RHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRTSIEHPSA 67 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEM-----LALMPEGGAPSPEERESQLETLQLLDSML 118 L IA V + + R LE+ LA + +G A PE + + L+ L + + Sbjct: 68 LLFRIATNVALRMRNRGRLERILFAAKCEAELAEIADGYA-LPERQTIARQELKRLAAAI 126 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 D L + RE FLLS+LDGL EIA +LG+S + V+K++ KA+ HC RL+ Sbjct: 127 DALPPRCREVFLLSRLDGLANGEIAQRLGISRNMVEKHIIKALLHCRRSRLD 178 >UniRef50_Q82WW6 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WW6_NITEU Length = 166 Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 12/164 (7%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCT 67 T + + + L+ G L ++L RKL S +A DI Q+ +LR + +S+I +PR+FL T Sbjct: 2 TITYSGDELFLQLRGDLLNYLCRKL-SKDEAADILQEIYLR-WRRQDISSIENPRAFLFT 59 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGG------APSPEERESQLETLQLLDSMLDGL 121 +A ++ D RR A + Y + + + A +ER Q+E LQ LD L Sbjct: 60 VALNLIRDQARRQAHVQTYANTMQHLFQDKPADYDLAQHCDERR-QIEYLQ---QALDQL 115 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 R AFLL +LDGLT++EIA ++G+S SV +Y+ A EHCL Sbjct: 116 PENVRHAFLLFRLDGLTFAEIALQMGISSKSVARYIQHASEHCL 159 >UniRef50_Q4K9A6 RNA polymerase sigma-70 factor, ECF subfamily n=19 Tax=Pseudomonas RepID=Q4K9A6_PSEF5 Length = 177 Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 +L ++ L +L KL + A+D+ D ++RV+ + + I PR+FL A +++ Sbjct: 17 ALLENYYRELMCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVI 76 Query: 75 DLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 D RRNAL ++ LE+L PSP+ + L++L L L RE+FLL + Sbjct: 77 DGHRRNALRQSEPLEVLDNEERYFNPSPQTSLDHGQRLEMLQRALAELPRLCRESFLLRK 136 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L+GL++ +IA +LG+S S V+K++ A++HC Sbjct: 137 LEGLSHPQIAEQLGISRSLVEKHIVNAMKHC 167 >UniRef50_D1P6G0 RNA polymerase sigma factor, sigma-70 family n=4 Tax=Providencia RepID=D1P6G0_9ENTR Length = 178 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 5/161 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y + H L + +L ++ DADD++QD F + + +++ R++L IA V++D Sbjct: 15 YQSTHSQLVRFFRNRLGNSNDADDLSQDVFTLWLNRKAEDPVKESRAYLFKIASNVLIDH 74 Query: 77 FRRNALEKAYLEMLALMP-----EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +RRN + + + E A P E + + L +D L + REAFLL Sbjct: 75 WRRNQQQNQSATSIDDVAHEHSFEQTAADPSEILEHQQRITQLSEAIDLLPPRRREAFLL 134 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + DGL+ SEIA ++ +SIS V+K++A A+ HC + + G Sbjct: 135 YRFDGLSQSEIAERMEISISMVEKHIAAALVHCKKYLEDQG 175 >UniRef50_Q7W4H7 ECF-family sigma factor n=2 Tax=Bordetella RepID=Q7W4H7_BORPA Length = 162 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 1/139 (0%) Query: 27 WLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFR-RNALEKA 85 +L RKL ++ DA D+AQ+ + RV+ I PR+FL A + DL+R R + Sbjct: 11 FLARKLGNSHDAADVAQEAYARVLDRNGSCAIVQPRAFLFRAALNLCTDLYRNRRGSQVM 70 Query: 86 YLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHK 145 L+ A AP +ER + + L L+ L L R+AFL+ Q++G+++ EIA+ Sbjct: 71 PLDAAAEAVRCEAPLQDERLYRRQQLARLERALQELPPACRQAFLMRQVEGMSHDEIANS 130 Query: 146 LGVSISSVKKYVAKAVEHC 164 LG+S+ V K++ +A+ HC Sbjct: 131 LGISVDMVHKHLTRALRHC 149 >UniRef50_B7S233 RNA polymerase sigma factor, sigma-70 family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S233_9GAMM Length = 182 Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 8/156 (5%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 L H L+ +L RKL ++ DA ++AQ+ ++R+ E + + R+FL +A + VD Sbjct: 12 LVAEHGVPLEKYLARKLDNSEDAAELAQEAYMRLHRLEQPENLDNARAFLFQVATNLAVD 71 Query: 76 LFRRNALEKAYLEMLALMPEGGAP--------SPEERESQLETLQLLDSMLDGLNGKTRE 127 RR L +L+ G P SPE+ E L ++ ++ L K ++ Sbjct: 72 QLRRRQLHFKFLKSEKSQSVDGEPMDYNAAGASPEQILDAREKLDTINRAIEELPFKVKQ 131 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 AFLL + GL+YS IA ++ VS+SSV+KY+ A++H Sbjct: 132 AFLLHRQSGLSYSAIARQMDVSVSSVEKYILHALKH 167 >UniRef50_B4EXQ8 ECF-family sigma factor n=7 Tax=Enterobacteriaceae RepID=B4EXQ8_PROMH Length = 182 Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 5/153 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y + +G L + ++ + DADD++QD F + + + +++ R+FL IA V++D Sbjct: 15 YQSTYGQLVRFFQKRTGNHHDADDLSQDVFTLWLNRKEQTPVQEQRAFLFKIANHVLIDH 74 Query: 77 FRRNALEKA-YLEML----ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +R+N +K Y E A+ P + L LL +D L + REAF+L Sbjct: 75 WRKNQKQKNIYQEDYQLEDAVQTYTTELDPGHVLEHQQRLDLLTQAIDTLPPRRREAFIL 134 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 + DGL+ SEIA ++ +SIS V+K++A A+ HC Sbjct: 135 YRFDGLSQSEIAEQMEISISMVEKHIAAALLHC 167 >UniRef50_Q4K9E5 RNA polymerase sigma-70 factor, ECF subfamily n=8 Tax=Proteobacteria RepID=Q4K9E5_PSEF5 Length = 181 Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 13/169 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + R TA + H+ L TR+L++ A+D+A DTF+RV+ S+ +T++ Sbjct: 10 LPQRPAMTAKPPRRPGFFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESDA-ATVQQ 68 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEM---LALMPEGGAPSPEERESQLETLQLLDSM 117 PR++L A+ + VD FRR A E L++ P G E + +QL DS+ Sbjct: 69 PRAYLHQTARNIAVDAFRREDRRGALEEQGVHLSVSPSGDP------EHFMHAIQLADSI 122 Query: 118 ---LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 L L R+ F+ +++GLT +EIA +LG+S + V+KY+ + + H Sbjct: 123 ERALGELPVNCRKVFVWQKIEGLTQAEIAERLGLSKNMVEKYMIRTLRH 171 >UniRef50_Q82V82 Putative sigma-70 factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82V82_NITEU Length = 170 Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 3/144 (2%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET---LSTIRDPRSFLCTIAKRV 72 LY HH WL SWL +L +A DA D+A D FLR+++ + + R++L T+A+ + Sbjct: 24 LYSDHHDWLYSWLRHRLGNAADAADLAHDAFLRLIIKPAPRGFANFGEARAYLRTMAQGM 83 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 ++L+ R +E+A+L+ LA PE APSPE + LE L + +ML L K AFL++ Sbjct: 84 CINLWHRREIERAWLDTLAAWPEALAPSPERQVMVLEALHEIGTMLLDLPPKAARAFLMA 143 Query: 133 QLDGLTYSEIAHKLGVSISSVKKY 156 +T E+A LGVS V+KY Sbjct: 144 AACQMTDKEVAEALGVSSRMVRKY 167 >UniRef50_B1ZXK0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXK0_OPITP Length = 186 Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 8/150 (5%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H L+++L D DD+ Q+T+ R+ V +T IR R+F+ T A+ V +DLFRR Sbjct: 19 HEPALRAYLQSHFPLLQDPDDVIQETYKRLWVEQTAGRIRHVRAFMFTAARNVALDLFRR 78 Query: 80 NALEKAYLEMLALMPE-----GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 K E L PE APS E SQ + L++L + L + R+ LL L Sbjct: 79 T--RKIQFEPLT-HPEVIDVVKEAPSTAEALSQQQELEILAQAVQKLPDRCRQVMLLRYL 135 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 G +Y EI+ L +S +VK ++AK ++ C Sbjct: 136 KGCSYKEISALLDISPETVKTHLAKGIQQC 165 >UniRef50_D0XYL3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XYL3_9CAUL Length = 201 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 83/144 (57%), Gaps = 2/144 (1%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H L++WL R+ + + DDI Q+T+ + E++ I + R+++ +AK V++ RR Sbjct: 19 HEPALRAWLARRPLAGLEVDDIVQETYAILAALESVDHILNGRTYMFEVAKSVVLRSLRR 78 Query: 80 NALE--KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGL 137 + + +A E AL P PSPE + + L + ++ GL K REAF L ++ GL Sbjct: 79 SRIVAFEALAEAEALEPPSDEPSPETVAADRQELSRIAGLIAGLPAKCREAFTLRKVHGL 138 Query: 138 TYSEIAHKLGVSISSVKKYVAKAV 161 + E+A ++GVS ++V+K+V K + Sbjct: 139 SQREVARRMGVSENTVEKHVGKGI 162 >UniRef50_Q4KBX1 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KBX1_PSEF5 Length = 230 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRD 60 +DR + + + H+ L +LTR++ A D+AQ+T+L+++ V + + Sbjct: 56 ADRPPMLPTPSLLRSFQEHYDDLLKFLTRRMSDRQRAADVAQETYLKLLKVDPQTVEVHN 115 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEG--GAPSPEERESQLETLQLLDSML 118 R F+ +A + +D RR A L E AP+PE E L +LD L Sbjct: 116 DRGFIFRVAGNLAIDTLRREQRLAANLSDGQEHAEAVDPAPAPEAVLLAKERLAVLDEAL 175 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L+ R+A LL++L+GLT ++IA +LGVS S V KY+ +A+ HC Sbjct: 176 AQLSDNARQALLLNRLEGLTQAQIALRLGVSESMVAKYIGQALRHC 221 >UniRef50_B2PU08 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PU08_PROST Length = 176 Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 12/130 (9%) Query: 38 ADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGG 97 A++I QD F+ + + T++ PR+F+ T+A+R + + +RR +E Y +L Sbjct: 41 ANEILQDVFVHTIETYRCQTLQFPRAFMYTLAQRNIANFYRRQRIEAEYQRLLV------ 94 Query: 98 APSPE-ERESQL---ETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSV 153 P PE E+QL E LQLL L L +A+LL+Q +G+TY +IA +L VS +S+ Sbjct: 95 EPEPEWNLETQLVVEEQLQLLSEQLAKLPENMEQAYLLAQFEGMTYQQIATQLKVSPNSI 154 Query: 154 KKY--VAKAV 161 K Y VA+ V Sbjct: 155 KYYLQVARKV 164 >UniRef50_Q1GQ36 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sphingopyxis alaskensis RepID=Q1GQ36_SPHAL Length = 202 Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 E++Y TH L +L RK +A D+ Q+ F R SE + +P FL IA+ + Sbjct: 43 LETVYRTHRSSLFHFLRRKA-GPEEASDLVQEVFARAAGSEQRHQLVNPGGFLRRIAQNL 101 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLET---LQLLDSMLDGLNGKTREAF 129 ++D RR + A + +L E A +P +E LE L+L + +D + KTR F Sbjct: 102 LIDRARRR--KSAPKALFSLREESDAVTPATQEWNLEAADLLELYEKAVDAMPPKTRRVF 159 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 L+ ++D L+Y EI +LG+SI++V+ ++ KA+ Sbjct: 160 LMHRVDELSYREIHEQLGISIATVEYHMMKAL 191 >UniRef50_Q07HV8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07HV8_RHOP5 Length = 171 Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 4/163 (2%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T A +L+ + LK+ LTR+L SA A D Q+T+LR+ +E++ ++ P S+L Sbjct: 2 TENALAIIRNLFVDRYDDLKARLTRRLGSADLAGDAMQETWLRLARTESVGVVQSPNSYL 61 Query: 66 CTIAKRVMVDLFR---RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 IA D R R L +E L +P+ APSPE+ L+ +++D L Sbjct: 62 FRIALNAAEDRSRTERRQRLLPVEIESLLELPDP-APSPEQITLGRSGLEAFKAIVDELP 120 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + RE FL +++ + EIA +LGVS V K + A+EHCL Sbjct: 121 ERRREIFLAARVGNVPRQEIAERLGVSRQLVTKELRLALEHCL 163 >UniRef50_A8ICQ0 RNA polymerase sigma-70 factor n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8ICQ0_AZOC5 Length = 216 Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 7/171 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET----LS 56 +SD+ +T S ++++ +H L + RKL A D+ QD F+R + ++ + Sbjct: 37 ISDQPSTAVS-DLDAIFRLYHRELNRFAYRKLGDREAAADVVQDAFVRYLSADAQRADTA 95 Query: 57 TIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLL 114 + PR FL I +M+D RR + + + + AP P+ E +L+ Sbjct: 96 RLDSPRFFLWRIVGNLMIDTIRRKRRQGIHATWDEITEDVVDPAPLPDRLLETREEFRLV 155 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L+ L+ R+A LL++++GLT+++IA +LGVS S V KY+ A+ C+ Sbjct: 156 KEALETLSPNCRQALLLNRVEGLTHAQIAGRLGVSPSMVSKYIMSALRRCM 206 >UniRef50_B0KMD3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMD3_PSEPG Length = 165 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 E + H G L+++L R+L++ A D+ Q+T+LR++ + + + RS L IA+ + Sbjct: 6 LELAFKAHAGELRAFLYRQLRNTDTAADLVQETYLRMLRQPPRAPVLNLRSLLFRIARNL 65 Query: 73 MVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 ++D R + E +A + E G +P P + L L+ L L + +E FL Sbjct: 66 VIDHTRSRGTRGQHDEGMAYLYEVTGESPEPFAEVAARRELALMAEALQRLPPRCQEIFL 125 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 L +L+G+ + +A +LGVS+S+V+K +A A++ Sbjct: 126 LCRLEGMAHKAVAEQLGVSVSTVEKQLAIALD 157 >UniRef50_A4YQ88 Putative sigma-70 factor, ECF subfamily n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YQ88_BRASO Length = 250 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 3/155 (1%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 T L ++ + LTR+L SA A ++ Q+T+L++ + I+ P+++L IA Sbjct: 8 TLRDLMLANYSVIDQQLTRRLGSADLASEVLQETYLKIESMHSTDEIKSPKAYLFRIALN 67 Query: 72 VMVDLFRRNA--LEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 + D R A L +++L +P+ PSPE + + LL L L + R+ Sbjct: 68 IANDHRRAQARRLTTEEVDVLLDIPDD-RPSPEREIEERSDIALLRRALADLPERRRQVL 126 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +LS+++GL + EIA ++GV++ +V+ + +AVEHC Sbjct: 127 MLSRIEGLPHREIAQRMGVTVRTVESDLKQAVEHC 161 >UniRef50_Q2IRT3 Sigma-24 (FecI-like) n=2 Tax=Bradyrhizobiaceae RepID=Q2IRT3_RHOP2 Length = 166 Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 +++GT G L+ + R A A+D+ +TF+++M + RD + T A+ + Sbjct: 9 NIFGTEQGHLQRLVRRITGDAHTAEDVVHETFIKLMNRDVGQ--RDV-GLVVTTARNLAR 65 Query: 75 DLFRRNALEKAYLEMLA---LMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 D R + +Y E ++ L P G PE+ + L L L L +T+ FLL Sbjct: 66 DAMRAERVRTSYAESVSREQLQP--GVVGPEDAVASRMDLDALLRSLQTLPRRTQRIFLL 123 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 S++DG+TY +IA KLGVS+S+V+K + A+E C +R Sbjct: 124 SRVDGMTYPQIARKLGVSVSTVEKEMISALEFCRNWR 160 >UniRef50_C5CUF5 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Comamonadaceae RepID=C5CUF5_VARPS Length = 181 Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D A + T ++ + L R +++A ADD+ QD +L++ + P Sbjct: 7 DSALHLSEPTLAEVFIANRAQLLRVARRIVRTAELADDVVQDAYLKITDGPCVRKADRPI 66 Query: 63 SFLCTIAKRVMVDLFRRNALEKAY------LEMLALMPEGGAPSPEERESQLETLQLLDS 116 + C + + V +D RR+ +E Y +E L + GAP+P+ + + +Q +D Sbjct: 67 GYCCQVVRNVALDCCRRHTVEANYRTFDVDVEALDV---AGAPTPDRLMRERQAIQAIDK 123 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 +L L +TR F L +L+GLT EIA +LG ++ V +A+A + Sbjct: 124 VLAELPARTRLVFELYRLEGLTQREIAQRLGCALGLVNGLIAEAAQ 169 >UniRef50_B8EQK9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylocella silvestris BL2 RepID=B8EQK9_METSB Length = 171 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 7/153 (4%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 L+ H L++ + R+++ A DI QD F V+ S T + L A+ +D Sbjct: 11 LFARHRAKLEAIVVRRIRDRDAAADIVQDVFANVLASGTKGSQDADTRVLFAAARNAAID 70 Query: 76 LFRRNALEKAYLEMLA-LMPEGGAPSPEERESQLETLQL---LDSMLDGLNGKTREAFLL 131 R + +L+ ++PE P+P +++LE+ Q LD L+ L + R+ FL+ Sbjct: 71 ---RGLMTARRTRLLSSVLPEQIMPAPPSADAELESRQAIAALDRALEELTPRARQIFLM 127 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 ++ G + EIA +LG+S+S+V+K +A+A+ HC Sbjct: 128 HRVYGASNMEIARRLGISVSAVEKQLARALRHC 160 >UniRef50_B3PLR0 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PLR0_CELJU Length = 172 Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCT 67 A FE ++ HH L+ +L R++ A D+ QDTF+R + E I+ R++L Sbjct: 4 ADCRFEDVFKEHHKELEQFLRRQVNDPDMAADLVQDTFIRFKPLYEKPPGIQKVRAYLFR 63 Query: 68 IAKRVMVDLFRRNAL---EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 IA+ +++D FRR + + ++L +P A PE R + + L+ + + +D L + Sbjct: 64 IARNLVIDHFRREQIRCTDSVPEDILDEIPTEVA-GPEVRAASQQRLENIRAAVDQLPPR 122 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 R+ F++S++ G+T +EI L +S +V + KA++ Sbjct: 123 CRDVFIMSRVQGMTLAEIGLALNISPKTVFSHFTKALQ 160 >UniRef50_Q1G4X3 BhoD n=1 Tax=Bordetella holmesii RepID=Q1G4X3_9BORD Length = 164 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 86/152 (56%), Gaps = 3/152 (1%) Query: 18 GTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST-IRDPRSFLCTIAKRVMVDL 76 TH+ L +L+R+ S A D AQ+T+L++ + +S I + R+++ +A + +D+ Sbjct: 8 ATHYRELVDFLSRRTGSRDSAQDCAQETWLKLAGMQAVSAPISNVRAYVFQVAANLAIDM 67 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERE--SQLETLQLLDSMLDGLNGKTREAFLLSQL 134 RR E +E A GA SP+ E + + + L++ + +TR+ FLL ++ Sbjct: 68 QRRQTAENRNIERYAQFQLPGATSPDTAEIAALRQVIARLEAAILAQPLRTRQIFLLHKI 127 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 DG +Y++IA LGVS+ +++K++ + + C L Sbjct: 128 DGQSYADIAQALGVSLKTIEKHMTRVLLACRL 159 >UniRef50_C4TZ61 Sigma factor, ECF subfamily n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TZ61_YERKR Length = 179 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 13/157 (8%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 FE Y L ++ RKL++ A+D+AQ+TF+R + IR RS L IA+ + Sbjct: 4 FEKYYTE----LYRFINRKLRNRDHAEDLAQETFIRALTVPL--PIRSHRSLLYRIARNL 57 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPS---PEE--RESQLETLQLLDSMLDGLNGKTRE 127 ++D +RR A + APS P E ESQ L + ++ L + RE Sbjct: 58 LIDHYRRPDTHIHEPSEEADESDFAAPSYLQPYELIEESQYNAL--MTQTIEALPPRCRE 115 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 AF+L + DGL+ E+A ++G+SI+ V+K++ +A+ C Sbjct: 116 AFILHRFDGLSQKEVASQMGISINMVEKHIIRAMLAC 152 >UniRef50_B0T5W0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0T5W0_CAUSK Length = 178 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 7/151 (4%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y H WL + LTR+ S ADDIAQDT+LRV + IR P+S L IA + + Sbjct: 32 YLRHRAWLTAALTRRYGSDA-ADDIAQDTWLRVRGYVPPAPIRRPKSMLMRIALNLASN- 89 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 RR A +A + P+ E + + + ML L K R+ F L+ ++ Sbjct: 90 HRRKAAREAPTD-----PQDWTFDRRSTEGDQDAAVIFEQMLLALPPKLRDVFYLTHVEQ 144 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 TY+EIA LG+S+ +V+K + +AV C F Sbjct: 145 KTYAEIAALLGISLGAVEKRMRQAVAQCADF 175 >UniRef50_Q47F03 Sigma-70 region 2 n=1 Tax=Dechloromonas aromatica RCB RepID=Q47F03_DECAR Length = 165 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 +LY H G L+ +L R+L A ++A +TF+R +V+ + + + R+FL IA + + Sbjct: 7 TLYIEHIGELRRFLVRRLACIEVAAELAHETFVRYLVAVPTAPVANQRAFLFRIAGNLAI 66 Query: 75 DLFRRNAL---EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 D R + L + LE + +P P PE + L L +D L K RE F+ Sbjct: 67 DYLRSHRLSTPQTVDLESCSDLP-SDEPGPERYAIARQQLDCLRRAIDELPAKCREVFVR 125 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 + DG++ +A + GV++++++K++ +A+ Sbjct: 126 HKFDGISQKALASEYGVTVNAIEKHLVRAL 155 >UniRef50_B4WBG5 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBG5_9CAUL Length = 163 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 9/157 (5%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 A+ + LY + GWL L ++ +A D+ Q+T+LR + + IR P++ L + Sbjct: 11 AAASLNGLYRRYSGWLGKRLRGRV-GVDEAADVVQETYLR-LAPYLIEDIRHPKALLLRV 68 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A ++ D RR AL ++ + +P +R L Q+L +M R+ Sbjct: 69 ALNLVRDERRRMALRDRAMQGAIPIWVTAVDAPVDR---LHLKQVLLTM----PPLYRDV 121 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 F+LS+ DG+TY EIA G+S+++V++ +AKAVEHC+ Sbjct: 122 FVLSRFDGMTYPEIALAHGISLATVERRMAKAVEHCM 158 >UniRef50_Q79AD4 HasI protein n=2 Tax=Gammaproteobacteria RepID=Q79AD4_SERMA Length = 166 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 94/161 (58%), Gaps = 5/161 (3%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 ++L+ H L+++L KL+ A D+AQ++F R+ I D ++L AK + Sbjct: 6 LQALFLRHMRPLQAYLNAKLRDPQLAADLAQESFTRLTEQYPQGNILDIEAYLYKTAKNL 65 Query: 73 MVDLFR---RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 M+D R R E ++LA P G P+ E+R + LQLL L + +T++ F Sbjct: 66 MLDHLRQQQRRQTEAVEDDILAQYP-SGEPALEQRAIDSQLLQLLQQALADMPPRTQQIF 124 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L++LDGLT +++A +LGVS+S+V+K++A A+E L+ R+E Sbjct: 125 RLNRLDGLTQAQVAAQLGVSLSTVEKHLASALER-LMARME 164 >UniRef50_Q82WW0 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WW0_NITEU Length = 199 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 4/168 (2%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 + T S T + L+ L ++L RK+ +A D+ Q+ +LR + +S+I +PR+FL Sbjct: 33 SMTTSCTNDELFLQLRNDLLNFLYRKVGRD-EAADMVQEVYLR-WRKQDVSSIENPRAFL 90 Query: 66 CTIAKRVMVDLFRRNA-LEKAYLEMLALMPEGGAPS-PEERESQLETLQLLDSMLDGLNG 123 T+A ++ D R+ ++K E+ G A P R L L L+ L Sbjct: 91 FTVALNLIRDSSRQQIRVDKHTTEIQNFFEIGNAADDPARRYDGQRQLASLLHALNQLPE 150 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 AFLL + DG+T+++IA +LGVS +V++Y+ +A EHCL EY Sbjct: 151 PVGHAFLLFRYDGMTHAQIAKQLGVSSKTVERYIQRAGEHCLAILAEY 198 >UniRef50_A8EX51 Sigma factor, ECF family n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EX51_ARCB4 Length = 159 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 10/134 (7%) Query: 33 QSAFDAD---DIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEM 89 ++ FD D D+ Q+TF R + S L+ I + R+ L IAK VM DL++ EK + Sbjct: 14 KNIFDKDLAHDVTQETFARAIKSADLNQIENERALLYRIAKNVMFDLYK----EKNKINK 69 Query: 90 LALMPE---GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKL 146 ++ E + + EE + E + LL LD L K R+AF L +DG T E+A + Sbjct: 70 ISFDEEEYTDNSNTTEENIIKDEEVMLLMKSLDNLPKKRRQAFTLHIVDGYTREEVAELM 129 Query: 147 GVSISSVKKYVAKA 160 G+S+++V++++++A Sbjct: 130 GISLNAVEQHISRA 143 >UniRef50_Q4KGY1 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas fluorescens RepID=Q4KGY1_PSEF5 Length = 253 Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 11/147 (7%) Query: 27 WLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNAL---- 82 +L ++ +A DA D+ QD F + + + + PR+FL +A+ ++ D +RR + Sbjct: 95 FLRKRTDNASDAADMTQDVFTQWLDYRDRAQVEQPRAFLFQMARNLLRDHWRRQQVRSRA 154 Query: 83 -----EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGL 137 + L+ L E P P +L+ L+ L +L L+ + REA +L + +GL Sbjct: 155 HQDGHHEQSLDNEPLADEQHEPLPAA--QRLQRLEQLKEVLAQLSPRRREALMLHRFEGL 212 Query: 138 TYSEIAHKLGVSISSVKKYVAKAVEHC 164 + ++IA ++G+S+S V+K++A A+ HC Sbjct: 213 SQTQIAERMGISVSMVEKHIAFALLHC 239 >UniRef50_Q21KS5 Sigma-70, region 4 type 2 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21KS5_SACD2 Length = 168 Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 6/152 (3%) Query: 15 SLYGTHHGWLKSWLTRKLQ-SAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 SLY + L + K + + DA+DI QD F V+ ++ + TI +P+++L A + Sbjct: 9 SLYEKYRSDLGGLIATKFKKNQHDAEDIVQDAFYNVLRAKNIDTIDNPKAYLYQAASNLA 68 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAP--SPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ R+N + Y+ A M + +PE L++L++ +D L K + FL+ Sbjct: 69 LNRIRKNNYHRDYI---ASMDDTAVDMLTPERNVLAQHDLKMLETAMDKLPKKYQTTFLM 125 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 S++ +Y EIA L ++ S+V+K++ K ++H Sbjct: 126 SRMHSKSYKEIAADLNIAESTVEKHIIKTLKH 157 >UniRef50_B0T3U5 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Caulobacter RepID=B0T3U5_CAUSK Length = 194 Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 RA A L E L H L++WL R +A D DDI Q+T+ R+ + I PRS Sbjct: 5 RARVVAWLGREIL--PHEADLRAWLRRSFAAAGDVDDIIQETYCRLAALTHIDHIDQPRS 62 Query: 64 FLCTIAKRVMVDLFRRNALEK--AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 +L A+ V ++ RR + + E+ +L E PS E S L+ + S++ GL Sbjct: 63 YLFQAARNVALEQIRRARVVRIETVAEIESLNLEHDTPSVERVISGRRELERVRSLIAGL 122 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVS 149 + R F + +++G++ EIA +LGVS Sbjct: 123 PERCRRIFEMRKIEGVSQREIARRLGVS 150 >UniRef50_Q82W77 Putative sigma-70 factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82W77_NITEU Length = 169 Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 11/150 (7%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H+ L + TRK S D +D D +++ S +STI PRS+L + + + D +R+ Sbjct: 14 HYNELIRFWTRKTGSRGDVEDATHDVITKLLES-NVSTISSPRSYLHSSIRNRLTDSYRQ 72 Query: 80 NALEKAYLEMLAL--MPEGGAP-SPEERESQLETLQLLDSMLDGLNG---KTREAFLLSQ 133 N + L+++ + +PE P P + + T+QLL ++ + L K R+ F+ + Sbjct: 73 NKI----LDLVPIHDLPEDSHPLQPNDPVTHTCTMQLLTALKEALQELPLKCRQVFIWHR 128 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 L+G + +EIA KL +S++ V+KY+ +A H Sbjct: 129 LEGYSQTEIAEKLDISVNMVEKYMIRATRH 158 >UniRef50_B4SMM8 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Stenotrophomonas RepID=B4SMM8_STRM5 Length = 169 Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 10/163 (6%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 +T L H+ L + + RKL DADD+ Q+T+LRV+ + + R++ Sbjct: 2 STPVEPTDVAHLCAAHYRPLHAHVRRKLPQHSDADDVVQETWLRVVKVAASGLLNNGRAY 61 Query: 65 LCTIAKRVMVDLFRRN------ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 L +A ++ D +R+ AL+ A L +A AP PE+R E L+ LD+++ Sbjct: 62 LYRVAHNLIADHYRQRQRRREEALDDAQLHAIA----DPAPLPEQRLLDAEQLRHLDAII 117 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 L ++R+ FLL++++ + +EI +LG+S + ++ +A+ Sbjct: 118 AALPPRSRQVFLLARVEQMALAEIGRQLGISRQTAHGHLLRAL 160 >UniRef50_C3Q8S3 RNA polymerase ECF-type sigma factor n=8 Tax=Bacteroides RepID=C3Q8S3_9BACE Length = 181 Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 87/156 (55%), Gaps = 4/156 (2%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCTIA 69 L F+ + + +K++ + L+S DA+DIAQD F+++ L R+ S+L T+ Sbjct: 11 LRFKKFFDLNFPKVKTFAWQLLKSEEDAEDIAQDIFVKLWEKPDLWLEREKLDSYLYTVV 70 Query: 70 KRVMVDLFRRNALEKAYLEMLA---LMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 + + + + A+E YL++ A M E G P+P++ E + L+ + + R Sbjct: 71 RNHIYNFLKHKAVEYDYLDVAAEKMRMAELGLPTPDDEFCAHELELFVQMALERMPEQRR 130 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 FL+S+ +G+T EIA KL VS+ +V++++ KA++ Sbjct: 131 RVFLMSREEGMTSPEIAEKLNVSVRTVEQHIYKALQ 166 >UniRef50_C1DIP0 RNA polymerase sigma factor, FecI family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DIP0_AZOVD Length = 234 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 1/161 (0%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 T A + ++ L +LT +L+ A D+ D ++R++ S ++ P+++L Sbjct: 50 TVACFKLGGIMEKYYQQLVRYLTTRLRDRHLAADVVHDAYVRILEGGHGSLVKYPQAYLY 109 Query: 67 TIAKRVMVDLFRRNALEKA-YLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 A + +D RR + ++ LE + SP++ + L++ L+ L+ Sbjct: 110 RTAINIAIDTHRRETVRRSESLEDIEPHAAEQFLSPQDSLYLRQRATLVERALNELSENC 169 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 R+AFL+ +LDGL ++EIA ++G+S V+K++ A+ HC + Sbjct: 170 RKAFLMRKLDGLGHTEIAARMGISKDMVEKHIVNAMRHCRI 210 >UniRef50_Q3SNK8 Fec I like protein n=2 Tax=Nitrobacter RepID=Q3SNK8_NITWN Length = 172 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 15/163 (9%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 + L T G L+ + R+ ++ DA D Q+TFLR++ S S I +P+++L A+ + Sbjct: 6 VQELQQTEEGRLRRFFQRRFRNRADAADATQETFLRLLASAQRSLIENPQAYLFRTARNI 65 Query: 73 MVD---LFRRNAL-------EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 VD L +R A EKA L + APSPE E L L + L GL Sbjct: 66 AVDQERLQQRRAQVECPITDEKAVLNIPC-----DAPSPEMALIDKERLHLFEQALIGLP 120 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + R+ LL +++G +Y IA LGVS ++V V A+ HC+ Sbjct: 121 ERPRKVLLLRRIEGWSYPAIAQHLGVSPNTVYNDVRLAMGHCM 163 >UniRef50_A5W6B0 Anti-FecI sigma factor, FecR n=3 Tax=Pseudomonas putida RepID=A5W6B0_PSEP1 Length = 374 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 17/158 (10%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLR-VMVSETLSTIRDPRSFLCTIAKRVMVD 75 + H+ L +LTR++ A D+AQ+T+L+ V + E + RSF+ +A + +D Sbjct: 13 FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVVHARSFIFRVAGNLAID 72 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPE---------ERESQLETLQLLDSMLDGLNGKTR 126 RR + +A + + E E LQ+LD L L R Sbjct: 73 ALRRE-------QRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNAR 125 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +A LL++++GLT ++A +LGVS S V KY+ +A+ HC Sbjct: 126 QALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163 >UniRef50_A5FID8 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FID8_FLAJ1 Length = 203 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIA 69 + + L T+H L + +++ + A+DI Q+ F++V T L +SFL + Sbjct: 22 MAYTYLIDTYHHKLCVYANSLVKNVYSAEDIVQNVFIKVWEQRTRLKPEHSLKSFLYKMT 81 Query: 70 KRVMVDLFRRN----ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 +DL+R+N +LEK+Y + L G E+ E+ L ++ + L K Sbjct: 82 YNEFIDLYRKNQSLFSLEKSYYDAL-----NGIVQEEDSEAFQRVLNAVNKEIQNLPPKC 136 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 +E F+LS+ +GLT EIA L VSI +V+ + KA Sbjct: 137 KEVFILSKKEGLTNIEIAEHLDVSIKTVEAQITKA 171 >UniRef50_UPI000174534D RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174534D Length = 185 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 6/146 (4%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALE 83 L+S+ ++ +A D+ Q+ F RV+ + + + PRS L IA+ +++D R A Sbjct: 32 LQSFFQGQVGCTHEAKDLTQEAFTRVLSWQPKAQVTQPRSLLFRIARNLLIDRSRSRAKS 91 Query: 84 KAYL-----EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLT 138 E LA P+ +P++ + E L+ + + L + RE F+LS+ GL+ Sbjct: 92 HEISGPLTDEQLAATPDQST-APDQHLAARENLRKVQVTIATLPDRCREVFILSRFGGLS 150 Query: 139 YSEIAHKLGVSISSVKKYVAKAVEHC 164 Y EIA +L ++ S+V+K++ +A+ C Sbjct: 151 YPEIAERLAIAPSTVEKHMIRALTAC 176 >UniRef50_B0T8M9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0T8M9_CAUSK Length = 167 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 SL ESL + W + L R+ ADD+AQ+ +LR E +R P++FL +A Sbjct: 15 SLAVESLCRRYDTWFRGVLRRRYGD--QADDLAQEAYLRTAAHEAGGKVRHPKAFLLNVA 72 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 + D RR E AY P + +E L+ + L L + R+ Sbjct: 73 NNLATDRRRRELRENAYASYRGAFPTQSTAATQEMAVTLKQIML------ALPPELRDCL 126 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 ++S++ G T+ EIA +LG++ +VK V +A Sbjct: 127 IMSRVHGQTHGEIALQLGLTQRTVKDRVRRA 157 >UniRef50_A9BM34 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BM34_DELAS Length = 199 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 13/157 (8%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV----------SETL--STIRDPRSFLCT 67 H+G L+ LTR L+ A DIAQ +F RV V +ETL + I PR+ L Sbjct: 11 HYGDLRRQLTRDLRDPHYAADIAQSSFERVYVHALGLRSGKKAETLPDAGIESPRALLFR 70 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +A+ + +D R+ + + ++ + APS E +Q + L + L+GL + RE Sbjct: 71 VARNLCIDDARKRKTAQEWTRQ-QMVVQHSAPSSETLAAQRQILNRVVQALEGLPPRRRE 129 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 F+L + G T +EIA +L ++ +V K++ +A C Sbjct: 130 VFILFRAHGYTRAEIADQLNITEMAVAKHMVRATLDC 166 >UniRef50_B3QGA7 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Rhodopseudomonas palustris RepID=B3QGA7_RHOPT Length = 173 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 4/155 (2%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 S++G G LK + R +A A+D+ +TF+++M + T RD + T A+ + Sbjct: 16 SIFGAEQGQLKRMVRRITGNAHTAEDVVHETFIKLMNRKV--TERDI-GLVVTTARNLAC 72 Query: 75 DLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 D R + +Y ++ + G PE+ + L L L L +T+ FLLS+ Sbjct: 73 DTIRAERVRASYASNVSSEQLQAGVVDPEDAVASRLDLDALLRALQTLPVRTQRIFLLSK 132 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 +DG+TY +IA L +S+S+V+K + A+E C +R Sbjct: 133 VDGMTYPQIARSLNISVSTVEKEMISALEFCRTWR 167 >UniRef50_C5AHS8 Putative transmembrane sensor n=1 Tax=Burkholderia glumae BGR1 RepID=C5AHS8_BURGB Length = 490 Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 62/111 (55%) Query: 21 HGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN 80 +GWLK+ L R++ S DA+D+A +F + + IR+PR++L IA+R+ +++RR Sbjct: 24 YGWLKAKLQRRVGSPADAEDLAASSFEALAGVDDPPGIREPRAWLTVIAQRLTFEMWRRR 83 Query: 81 ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 LE+AY L APS E + L L+D LDGL K + F L Sbjct: 84 DLERAYQNALLNAEAPLAPSAESIVEISQALFLIDQALDGLPPKGEKCFYL 134 >UniRef50_C6XUM3 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUM3_PEDHD Length = 191 Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIA 69 + F +Y G L ++ +++ DA DI Q+ F + V L I+ + +L Sbjct: 30 IAFTEIYNRFAGILYVFVRKRIGDKDDAQDILQELFTDLWVKRELVNIKGEITPYLYAAV 89 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEE--RESQLETLQLLDSMLDGLNGKTRE 127 + M+D RNA +K Y++ + + + RE QL L ++ +D L K RE Sbjct: 90 RYKMIDFIERNATQKRYIDAIENFKDQETVMTDHLVREKQLAAL--IEKQIDQLPKKMRE 147 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 FLLS+ LTY+EIA +L +S +++ + A++ + RL+ GL Sbjct: 148 VFLLSRNANLTYNEIAQELDLSKQTIRAHAKNAIK---ILRLKLGL 190 >UniRef50_D0J7U7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Comamonas testosteroni RepID=D0J7U7_COMTE Length = 155 Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 1/151 (0%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIRDPRSFLCTIAKRVMV 74 + ++ L S+ R L S A D+ Q+++ RV ++ +RD R+ L K +++ Sbjct: 1 MVAHYYAELVSFFARSLNSRDAAADVVQESYARVFAMQSRELAVRDLRALLFRTGKNIVI 60 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 D RR A E LE LA++ APS E + + L LL L + K RE F+L ++ Sbjct: 61 DDARRRAAEARMLETLAVVGADEAPSAERQVQGRQQLVLLSRRLQAMPRKRREVFVLVRI 120 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 G +++E A + +S ++++K+V +AV C+ Sbjct: 121 YGFSHAEAAVHMNISEAAIEKHVVRAVCDCM 151 >UniRef50_C2G377 RNA polymerase ECF family sigma factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2G377_9SPHI Length = 202 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 32 LQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEML 90 ++S A+DI Q+ F++V + L I++ +++L TIA+ +D R+ L LE + Sbjct: 41 VKSQEQAEDITQEIFVKVWNRRKDLEEIKNIKAYLYTIARNTTLDHLRKKVLVTENLEQM 100 Query: 91 ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSI 150 A +P +R E ++ + L K +E F++S++DGL++ EIA +L +S+ Sbjct: 101 IHYFTDHALTPVQRIEYKELEDIISKGIATLPSKVKEVFVMSRIDGLSHEEIAARLDISV 160 Query: 151 SSVKKYVAKAVEHCLLF 167 +S K YV +A++ L+ Sbjct: 161 TSSKTYVVRALKLLRLY 177 >UniRef50_A3PQS7 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Alphaproteobacteria RepID=A3PQS7_RHOS1 Length = 173 Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALE 83 L LTR+ + DA D+ QD +LR+ + + + P +++ + + + +D R + Sbjct: 21 LSRHLTRRPGTLCDAQDVMQDAWLRLAKVQDVEEMSSPAAYVGQVVRNLAIDRLRAQRVR 80 Query: 84 KAYLEMLALMPEGGA-PSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEI 142 + + + + PS E + L L+ ++ L + R+ FLL + DGL++SEI Sbjct: 81 ERHFSAAEVHDQPADLPSAERIVDFRQRLARLEEIVAELPPRQRQVFLLHKFDGLSHSEI 140 Query: 143 AHKLGVSISSVKKYVAKAVEHC 164 A +LG+S S+V+K + KA+ C Sbjct: 141 AARLGISRSAVEKLIMKALAQC 162 >UniRef50_Q1I5S0 Putative RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas entomophila L48 RepID=Q1I5S0_PSEE4 Length = 198 Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%) Query: 19 THHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFR 78 H+ L+ +L +L++ DA DIAQ +F + S + + R+ L A+ + +D +R Sbjct: 43 AHYSDLRRYLCGRLRNPDDAADIAQSSFAQAYAHALNSPVINARALLFQAARNLCIDQYR 102 Query: 79 RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLT 138 R + E A LE E PS E+ E LQLL + ++ + RE F+ +L G + Sbjct: 103 RRSTELAALEDWLARAELLTPSVEDIMIAREQLQLLIARIERMPRLRREVFVRVRLHGHS 162 Query: 139 YSEIAHKLGVSISSVKKYVAKAV 161 + E+ LG+S SV+ ++A+AV Sbjct: 163 HREVCEALGLSAKSVELHIARAV 185 >UniRef50_A6GRF7 Sigma factor, ECF subfamily protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GRF7_9BURK Length = 167 Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLR-VMVSETLSTIRDPRSFLCTIAKRVMV 74 ++ H+ LK +L +L+ A D AQ+ F R V + + + DPR+ L IA ++ Sbjct: 1 MFEKHYRELKHFLLNRLRDHDLAADAAQECFSRAVAMQREGAAVLDPRALLFKIANNWLI 60 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPS------PEERESQLETLQLLDSMLDGLNGKTREA 128 D R+++ L + G P+ PE+ S + L L ++++ L + REA Sbjct: 61 DEHRKHSNRPELLSLEEEQENGYFPTAAQPIHPEQIASANQQLDKLLAIINDLPPRCREA 120 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 F+L + DGL+Y EIA ++ +S +V+ + A+ C+ LEYG Sbjct: 121 FILFKFDGLSYQEIAQRMDISPRTVEMQLRIAMAACIK-GLEYG 163 >UniRef50_B0KF86 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KF86_PSEPG Length = 163 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 E L+ H L +L RK + A DI Q+TFLR+ + + + ++L +A + Sbjct: 2 LEQLFNEHATALHRYLLRKNCTPSLAADIVQETFLRLAQMDGVERLLATPAYLFRVAHNL 61 Query: 73 MVDLFRRNALEKAYLEMLALMPEG---GAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 M+D RR K Y A + +G A SPE++ L+ L + L+ L +TR F Sbjct: 62 MIDHHRRYG-SKRYEAEPASIFDGLIDEASSPEDQALGALELERLHATLELLPERTRNVF 120 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 LL +++G+T+ E A L +S SSV+K++A A+ Sbjct: 121 LLCRVEGMTHKEAAEYLRISTSSVQKHLASAL 152 >UniRef50_B8H127 RNA polymerase ECF-type sigma factor n=2 Tax=Caulobacter vibrioides RepID=B8H127_CAUCN Length = 205 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 8/148 (5%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y H WL + L R+ DADDIAQDT+LRV +R PRS L IA + Sbjct: 60 YLRHLDWLTALLARRYPQ--DADDIAQDTWLRVHDYRPPRPVRSPRSLLARIALNLAASR 117 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 FR+++ E + P+ + ++ E L + M+ L K R+ F+L+ + G Sbjct: 118 FRKSSRE------IPTDPDHAPLAGRVIDASQEQAVLFEQMMLALPPKLRDVFVLNHVRG 171 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHC 164 LTY EIA G+S+ +V+K + +A+ C Sbjct: 172 LTYREIAQLRGISVKAVEKRMTQAIARC 199 >UniRef50_B1M943 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M943_METRJ Length = 181 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 8/158 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKR 71 F LY ++ L +LT ++ DA D+ Q+TF+R++ S T IR+ R+FL +A Sbjct: 15 FGLLYRSYQTALLRFLTNRVGRE-DAPDLVQETFVRMVQSGTDPGVIRNDRAFLFHVAGN 73 Query: 72 VMVD----LFRRNAL-EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 V+ D RRN L ++ L +P+ A ++++E Q L L + + Sbjct: 74 VVADHGRATRRRNRLLTPDEVDALLSVPDESARPDRAAQARIEG-QHLARALAEMPPRRA 132 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 EAF LS+L+GL++ IA +LGVS+ +V+ + A++HC Sbjct: 133 EAFRLSRLNGLSHQAIASRLGVSVRTVEGEIRMALDHC 170 >UniRef50_C5SMT0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SMT0_9CAUL Length = 189 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 80/146 (54%), Gaps = 6/146 (4%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H ++ WL+R S + DD+ Q+ + R++ + + I DPR++L IA+ +M++ R+ Sbjct: 18 HEAGMRQWLSRAGLSPSERDDLVQEVYYRLLRQTSYAHITDPRAYLYRIARNLMLEQIRK 77 Query: 80 NALEKAYLEMLALMPEGG----APSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 N + + + + E G +P+PE+ S L + + ++ L + + F L ++ Sbjct: 78 NRV--VSITTVQNLDELGRADLSPTPEQAVSARRELSRVMAFIETLPARCKAVFELRKVH 135 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAV 161 GL+ +E A +LG+S + V+K A+ + Sbjct: 136 GLSQAETAARLGLSENVVEKETARGL 161 >UniRef50_A6EA47 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EA47_9SPHI Length = 201 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIA----QDTFLRVMVS-ETLSTIRDPRSFLCT 67 F +LY + S L K+ + D+IA QD F+++ E L + +SFL T Sbjct: 27 FTTLYRNY----SSRLFAKINHLVNDDEIAKELLQDVFMKLWSQREKLDPTKSIKSFLFT 82 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 IA ++ D FR+ A +K Y + EE E+LQL+ +D L + R+ Sbjct: 83 IAVNLVYDHFRKLAKDKKYARSILQTAVDYYSHTEEEMHSKESLQLIRQAIDQLPPQRRQ 142 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 FL+ ++DG +Y ++A++L +S S+V+ ++ K Sbjct: 143 IFLMCKIDGKSYEQVANQLSISPSTVRDHIVKG 175 >UniRef50_C1DGX2 RNA polymerase sigma factor, ECF subfamily n=1 Tax=Azotobacter vinelandii DJ RepID=C1DGX2_AZOVD Length = 172 Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLR---VMVSETLSTIRDPRSFLCTIA 69 + L+ +H L+ R+L A D+AQD F+R ++ I +P+ FL I Sbjct: 5 LDRLFRLYHRELRQLAYRRLGDPETAADLAQDAFVRYAGLIRKHPRQAIANPQYFLWRIL 64 Query: 70 KRVMVDLFRRNAL--EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 + +++DL R A E+ L+ P PE + LQLL + L R+ Sbjct: 65 RNLIIDLRRGQARRGEQTSLDEAESELHDQRPGPERLLELRQQLQLLHRAFEELPPACRD 124 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 A LL++++GL+++ IA +LGVS S V KY+ +A+ HC+ Sbjct: 125 ALLLNRVEGLSHAAIAERLGVSPSMVCKYIMRALRHCI 162 >UniRef50_Q47X53 RNA polymerase sigma factor, sigma-70 family n=2 Tax=Alteromonadales RepID=Q47X53_COLP3 Length = 185 Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY HH L + K + +A+D+ Q+ F++++ + +++L IA + +D Sbjct: 29 LYQDHHLRLIHRVMAKGLAKREAEDVVQEAFVKLLGLDNQEISSYIQAYLYRIALNLAID 88 Query: 76 LFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 R NA ++ LE + + + SPE + + L+ + + L K R+AF+L + Sbjct: 89 KLRSNA--RSPLESMHEQEDYSDESTSPERKNESQQLLRKMSESIKTLPLKCRQAFILYK 146 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + G++Y++IA L VS S V+KYV +AV HC Sbjct: 147 IKGMSYADIASTLEVSESMVRKYVLRAVRHCF 178 >UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSK7_DYAFD Length = 192 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 6/150 (4%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAK 70 F L+ +H WL + R +S A+++ D FL++ ++ E LS I + +L I+K Sbjct: 24 AFSRLFDHYHQWLGMHIYRITRSEQIAEELVHDVFLKIWLNRELLSGIENFSVYLFVISK 83 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 ++ ++ A+E++ L E G PE+ + L+D +D L + R+ ++ Sbjct: 84 NAALNALKKIAVERSRFTDL---DEAGDIMPEQPDDY--RYALIDEAIDRLPPQQRQVYM 138 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 LS+ L+YSEIA ++G+S +VKKY+ A Sbjct: 139 LSRHQRLSYSEIALRMGLSRETVKKYLQIA 168 >UniRef50_A7M626 RNA polymerase sigma factor n=5 Tax=Bacteroides RepID=A7M626_BACOV Length = 198 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 18/160 (11%) Query: 13 FESLYGTHHGWLKSWLTRKLQSA--FDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIA 69 FE LY + G L +++ R L S + A+++ Q TF+R+ V E + SFLCTIA Sbjct: 22 FERLYNMYSGKLYNFIMR-LSSGNQYMAEEVVQATFIRIWEVHEKVDPASSFISFLCTIA 80 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLET-------LQLLDSMLDGLN 122 K +++++++R +E Y E L S +R+SQ E + +DS+ + L Sbjct: 81 KNLLMNMYQRQTVEYVYNEYL-------MKSSVDRDSQTEENIDLRFLNEYIDSLAEELP 133 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + ++ F+LS+ T EIA +G+S S+V ++ AV+ Sbjct: 134 AQRKKIFILSKRQNYTNKEIAEIMGISESTVATQLSLAVK 173 >UniRef50_B4W7I6 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7I6_9CAUL Length = 159 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 38 ADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE-- 95 A+DIAQ +LRV + I+D R++L +A + D RR E P Sbjct: 21 AEDIAQTLWLRVQRIADPAAIQDKRAYLYRLALNLASDQMRRRKRGAVLFEGQIEDPGVI 80 Query: 96 GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKK 155 AP+ E R + L LL +D L + RE FLL +++ L+ +E+A +LG++ ++V K Sbjct: 81 DAAPTTEARIMHRQRLDLLAEAIDELPPRCREVFLLRRIEELSPAEVAERLGITPNAVAK 140 Query: 156 YVAKAVEHC 164 +V A+ HC Sbjct: 141 HVRHALHHC 149 >UniRef50_C1DNR4 ECF sigma factor, FecI family n=14 Tax=Pseudomonadaceae RepID=C1DNR4_AZOVD Length = 194 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALE 83 +++ ++R++ A D+ QD FLR + + +P ++L A+ + +D R Sbjct: 35 MEALVSRRVGCRATAADLIQDLFLRFW-KRPMRQLDEPGTYLLRSARNLAIDHLRGEGKR 93 Query: 84 KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIA 143 L+ L +G S E + L+L+++ L GL +TR FLL+++ G TY EIA Sbjct: 94 NRSLDSLGPEHDGATASLETALQAGDELRLVEAALRGLPERTRHIFLLNRIHGRTYGEIA 153 Query: 144 HKLGVSISSVKKYVAKAVEHC 164 +G+S S+V+K++ +A++ C Sbjct: 154 RAMGLSQSAVEKHMMRALDTC 174 >UniRef50_B4SKC9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Stenotrophomonas maltophilia R551-3 RepID=B4SKC9_STRM5 Length = 174 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H+ L +L R+ +S A ++ D +R++ R P + L IA VD R Sbjct: 21 HYEELVDYLHRRFRSPGLAREVVHDVCVRLLERPAAHDARQPIALLRRIAHDAAVDRCRA 80 Query: 80 NALEKAYLEMLALMPEGGA--PSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGL 137 L + ++E A +PEG P PE + + LQ L + ++ + + ++ F+L ++ L Sbjct: 81 EDLRRHWVEPRAELPEGACERPGPERQAQGQQALQRLTTSIERMPCRRQQVFILHKIHEL 140 Query: 138 TYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +E+A ++G+ + +V++++ A+ C L Sbjct: 141 PQAEVAQRMGIGLKAVERHLRLAMADCRLH 170 >UniRef50_Q2RW11 Sigma-24 (FecI) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RW11_RHORT Length = 171 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAKRVM 73 SLY +H G L ++ + L A+D+ Q+ +LR + +R P ++L + + Sbjct: 10 SLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAYLYRVVRNTA 69 Query: 74 VDLFRRNALEKAYLEMLALM--PEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 VD RR + E+ E ++ P+ APSPEE + L+L+ + L L + R AF L Sbjct: 70 VDCLRRLSAEERRNEAGEILSDPDRQAPSPEEIALGRDHLRLVAAALSELPERNRRAFEL 129 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + +GL++ +IA L VS ++ + A+ H + Sbjct: 130 QRFEGLSFQQIAQHLEVSPATAHRLARDAMVHVM 163 >UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WV3_NITEU Length = 197 Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 91/167 (54%), Gaps = 10/167 (5%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 S +T S+ +LY H L+++L R A ++ Q+TF+R+M +T ++I++ Sbjct: 26 SPLSTMNPSVILANLYLRHFSELRAFLFRHTGCREIAAELTQETFIRIMGYQTDTSIQNA 85 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLAL--MPEGGAPSPEERESQ--LETLQLLDSM 117 R+ L IA + +D R + E +++ +P+ P+ E + + QLL+ + Sbjct: 86 RALLYRIAGNLAIDHHRTCV---KFPESVSIDDLPQHELPATELTDPARLVAARQLLEKL 142 Query: 118 ---LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 +D L + AF+L + DG +++EIA KLG++ ++V+K + +A+ Sbjct: 143 CIAIDALPPQCHRAFVLHKFDGYSHAEIAEKLGITRNAVEKLLIRAL 189 >UniRef50_C7PFD0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PFD0_CHIPD Length = 193 Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 1/144 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKR 71 F LY H + +++ SA DA+DI Q+TFL + S E L I +P S++ IA+ Sbjct: 21 FRQLYDRHSRQVAAFIFHLTHSAVDAEDILQETFLTLWTSREQLPAIVNPASYIFIIARN 80 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +D R+ A ++ ++ + A + + E+ QL+++ L L+ + R F L Sbjct: 81 KTLDHLRKIARQQKLVDHVWANISATADALDLELDARESQQLINTALSRLSEQQRTIFRL 140 Query: 132 SQLDGLTYSEIAHKLGVSISSVKK 155 S+ DGL ++ IA KL +S S VK Sbjct: 141 SRQDGLDHATIADKLHLSKSRVKN 164 >UniRef50_B9B7A9 RNA polymerase sigma factor n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7A9_9BURK Length = 164 Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 10/148 (6%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNA-L 82 L+ +L+R+L S+ DA D+AQ +F + + ++ P + + +++ + +D RR L Sbjct: 15 LRRYLSRRL-SSDDAADLAQASFEAALRYVRENEVQSPVALMFHVSQNLQIDAARRQRFL 73 Query: 83 EKAYLEMLALMPEG------GAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 + E + EG +PE ETL+ + LDGL + REAF+L +L G Sbjct: 74 PQQLCEEVG--DEGVDRLMRSDVTPEREYIARETLEQITQALDGLPPRCREAFVLCKLHG 131 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L+Y E A ++ +S + +KKY+ +A++ C Sbjct: 132 LSYEEAAREMDISPTVIKKYLVQALKAC 159 >UniRef50_Q212Z7 Sigma-24 (FecI-like) n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q212Z7_RHOPB Length = 183 Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 L T + L LTR+ SA A D+ Q+T+LR+ + +R P+++L IA + Sbjct: 9 LRDLLLTDYRQLDRQLTRRFGSADFASDVLQETYLRLEAMTDMVAVRSPKAYLLRIALNI 68 Query: 73 MVDLFR----RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 D R R +++A + L +P+ + E + E + LL + L + R Sbjct: 69 ANDRLRAESRRLTVDEA--DCLLDIPDDRPDAARVTEDRSEII-LLRRAIAELPDRRRHV 125 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 LLS+++G+ + EIA +LGV++ +V+ + +AV HC Sbjct: 126 LLLSRVEGVAHREIAKRLGVTVRTVETDLKQAVAHC 161 >UniRef50_B8KN82 Sigma-70, region 4 type 2 n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KN82_9GAMM Length = 196 Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD- 75 Y + L+ +L+R L D +D++Q+ +LR +E +R P++FL +A+ + ++ Sbjct: 16 YVANADHLRRFLSRFLFDFRDIEDLSQEVYLRASKAEKNGPVRSPKAFLFRVARNLALNE 75 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSP-EERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 L R++ ++E + + + +P +E++ + L L + R AFL+ ++ Sbjct: 76 LSRKSRRLTDFIEDVTVGGDVASPHTLDEQQHGEQRFALFCRAASRLPAQCRRAFLMRKV 135 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 G ++ EIA +LGVS S+V+K++A + C F Sbjct: 136 YGYSHREIAEQLGVSTSTVEKHIATGLYRCNQF 168 >UniRef50_A6V552 RNA polymerase sigma factor, sigma-70 family n=28 Tax=Pseudomonadaceae RepID=A6V552_PSEA7 Length = 187 Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 38 ADDIAQDTFLRVMVSETL-STIRDPRSFLCTIAKRVMVDLFRRNALEKAYL----EMLAL 92 A+D+ QD F R+ + + S+ + S+L I + + +D +R+ ALE+ Y E L + Sbjct: 39 AEDVVQDAFFRLQSAPQITSSFKAQLSYLFQIVRNLAIDHYRKQALEQKYSGPEEEGLNV 98 Query: 93 MPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISS 152 + +G SPE TL+ + L L G+TR AF + +L G+ +IA +LGVS + Sbjct: 99 VIQGA--SPEASHINYATLEHIADALTELPGRTRYAFEMYRLHGVPQKDIAKELGVSPTL 156 Query: 153 VKKYVAKAVEHC 164 V + A+ HC Sbjct: 157 VNFMIRDALVHC 168 >UniRef50_A6E6E9 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6E9_9SPHI Length = 204 Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMV 74 LY + L ++ R +S F A+D+ DTF+++ S E L + S+L IAKR ++ Sbjct: 27 LYHRYSNRLTYYVQRTSKSPFLAEDVVHDTFIKIWQSREQLDPSKPFESYLFVIAKRTLL 86 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 +L +R E + L + S E+ + E+ +L+++ ++ L+G+ ++ F+ ++ Sbjct: 87 NLLKRARHETSILAEIKKYAIIEDESTEKFLAYQESNRLINAAIETLSGQVKKTFIYCRV 146 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVE 162 ++Y + A L ++ S+V K+++KA++ Sbjct: 147 QDMSYKQAAEALNITESTVNKHMSKALQ 174 >UniRef50_D0XPS7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Caulobacteraceae RepID=D0XPS7_9CAUL Length = 174 Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 8/154 (5%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 +Y L +L +L S D +D+ QD +L+++ + + +PR+FL +A +++D Sbjct: 12 VYLEQRDALARFLRARLGSDTDIEDLLQDLYLKIVSLDPDYAVTEPRAFLYRLASNLLLD 71 Query: 76 LFR---RNALEKAYLEMLALMPEGG-----APSPEERESQLETLQLLDSMLDGLNGKTRE 127 R R + +A EG +PS E + L+ L + LD L +TR Sbjct: 72 RARSGRRARVRDTAWRQVAHHSEGAEDVNDSPSAETAVMDRQRLRGLLTTLDTLPERTRS 131 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 F + + DGL+Y+E+A LG+S SSV+K++ +A+ Sbjct: 132 IFRMHKFDGLSYAEVAATLGISRSSVEKHMMEAL 165 >UniRef50_Q21I31 Sigma-70, region 4 type 2 n=2 Tax=Gammaproteobacteria RepID=Q21I31_SACD2 Length = 185 Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 11/162 (6%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 +S+Y + L ++R + D +DI Q+T++RV + STI PRSF+ A+ Sbjct: 6 NVQSIYLSIQKALSRAVSR-IVPPHDVEDIVQETYVRVCQVKQPSTITHPRSFMLKTARN 64 Query: 72 VMVDLFRR------NALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 + +D +R ++L++ + LA + P R + + L + L + Sbjct: 65 LALDYIKRADNKLTDSLDEDTQDNLASYKDD----PYRRAAGEQDFALFCEAVRQLPVQC 120 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 R+ F+L ++ G + EIA +LG+S S+V+K++A+ ++ C F Sbjct: 121 RKVFVLKKVYGYSQQEIAKELGISQSTVEKHIAQGLKRCANF 162 >UniRef50_Q3SQY2 Fec I like protein n=3 Tax=Rhizobiales RepID=Q3SQY2_NITWN Length = 176 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 4/168 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 M ATT + S Y H L + L ++ S A+D Q+T+LR+ + + I+ Sbjct: 1 MDTAATTQSDDDLMSAYLRHWKALCAHLRKRTGSQELAEDALQETWLRLAGMKGDAAAIQ 60 Query: 60 DPRSFLCTIAKRVMVDLFRR---NALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDS 116 D +F+ +A + +DL RR +A+ E L PSPE + L+LL Sbjct: 61 DHHAFILRVAGNIAIDLVRRERRHAVHCVSDETLLAAVADNMPSPEVCVIDRDQLRLLAL 120 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L L K R A LLS+ DGL++ EI +L VS S V KY+ +A+ HC Sbjct: 121 ALARLPAKPRAALLLSRCDGLSHREIGARLKVSESMVAKYLGQALRHC 168 >UniRef50_Q82VA5 Sigma factor, ECF subfamily n=3 Tax=Proteobacteria RepID=Q82VA5_NITEU Length = 175 Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 84/151 (55%), Gaps = 7/151 (4%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTIAKRVMVDLFR 78 ++ L ++ R L+ A D+ Q+ + R +V++ + + I DPR+ L + +++D R Sbjct: 7 YYKELLNFCARTLKDRDAAADLVQEAYTRFLVAQRSGAAIADPRALLFRTTRNLLIDQHR 66 Query: 79 RNALEKAYLEMLALMPEGG--AP---SPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 R + + +L + L+ E AP PEE + Q L + ++ L + REAF+L++ Sbjct: 67 RAEV-RMHLSLDTLLEEEQPLAPRHLQPEEVLAFSRYAQALYAAIESLPRRCREAFILNR 125 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 DGL++ E+A K+G+S + V +++ + V C Sbjct: 126 FDGLSHQEVAEKMGISRNMVAQHIIRGVLVC 156 >UniRef50_Q7M8T6 PUTATIVE RNA POLYMERASE SIGMA FACTOR n=1 Tax=Wolinella succinogenes RepID=Q7M8T6_WOLSU Length = 157 Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 74/131 (56%), Gaps = 11/131 (8%) Query: 38 ADDIAQDTFLRVMVSETLST-IRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEG 96 A D+ Q+ + RV+ + I PR+ L AK + VD +RRN ++ L+ E Sbjct: 23 ASDVVQEAYARVLSLQAKEIPIAKPRALLYKTAKNIAVDEYRRNRRQEN------LLHEQ 76 Query: 97 GAPSPEERESQLETLQLLDSML---DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSV 153 +E + + E+ +L +++L D L + +EAF+L +L+G + +E+A K+G+S + V Sbjct: 77 ARACVQEWQGE-ESFELQETLLRAIDSLPPRCKEAFVLHKLEGFSQAEVAEKMGISKNMV 135 Query: 154 KKYVAKAVEHC 164 +K++ KA+ C Sbjct: 136 EKHIIKALLEC 146 >UniRef50_C6IQT2 RNA polymerase sigma factor n=3 Tax=Bacteroides RepID=C6IQT2_9BACE Length = 195 Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 13 FESLYGTHHGWLKSWLTR-KLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAK 70 FE LY + G L +++ R + + A+++ Q F+RV V E + SFLCTIAK Sbjct: 22 FERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWEVRERVEPESSFISFLCTIAK 81 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETL---QLLDSMLDGLNGKTRE 127 +++++++R +E Y E L G + E ++ + +DS+ + L + ++ Sbjct: 82 NLLMNMYQRQTVEYVYNEYL---KNTGVDRDSQTEESIDLRFLNEYIDSLAEELPAQRKK 138 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 F+LS+ T EIA +G+S S+V ++ AV+ Sbjct: 139 IFILSKRQNYTNKEIAEMMGISESTVATQLSLAVK 173 >UniRef50_B0SYA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0SYA8_CAUSK Length = 165 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 8/155 (5%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LYG L +L+S +A+D+ QD FL+V L D + L +A +M+D Sbjct: 4 LYGEKRANLVRVFAARLRSVSEAEDLIQDLFLKVEAVGELEVEGDGSALLFRMANNLMLD 63 Query: 76 LFRRNALEKAY------LEMLALMPEGGA--PSPEERESQLETLQLLDSMLDGLNGKTRE 127 R A L+ +AL + A PSPEE + + L ++ + L+ L + Sbjct: 64 RLRSQTRACARDEGWRSLQGVALGDQQVADMPSPEEVVAGRQRLNVMMATLETLPPQVAR 123 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 AF L +L+GL+++E A +GVS SS++K+V+ A++ Sbjct: 124 AFKLHKLEGLSHAETAAAMGVSRSSIEKHVSAALK 158 >UniRef50_C6XYK7 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XYK7_PEDHD Length = 195 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 1/151 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKR 71 F +Y + + ++ + L+S+ +DDI Q+ FL++ + E LSTI ++ TIAKR Sbjct: 21 FTIIYERYRLRVYLFIKKYLKSSQLSDDICQNVFLKIWENKEELSTINSFNAYAFTIAKR 80 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +D +R A+E+ + ++ EE + E L +D+ L L +T+E F L Sbjct: 81 QCLDFLKRAAVEQTAMNLILQAYPLDNNITEENQQYNEYLNFIDNTLLRLPPQTQEVFKL 140 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + +Y E A LG+S ++KK++ ++++ Sbjct: 141 CRQQYKSYDEAAAILGISRHAIKKHMVRSMK 171 >UniRef50_A1BAQ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAQ3_PARDP Length = 170 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMV 74 L+ TH G + S+L R L+ A+D+ QD FLR + ++ + R +L IA+ + V Sbjct: 9 LFCTHRGDVSSYLARMLRDPDLAEDLTQDAFLRCCTALQSGGRPENLRGYLYRIARNIAV 68 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSP--EERESQLETLQLLDSMLDGLNGKTREAFLLS 132 D R + + ++ P P E R E L++ L L KT+ F+L Sbjct: 69 DHLRLQKRRRTDMPGDHVLAAIADPRPGQECRMIDRERLKVFLRALAALPDKTQRIFVLH 128 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 ++ L+Y E+A + +S SSV+K++A+A+ Sbjct: 129 RIQRLSYREVAQDMELSESSVQKHLARAL 157 >UniRef50_B0T9D2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0T9D2_CAUSK Length = 183 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 TTA L + L+ L + R+L DA D+AQ+TFLR + +P ++L Sbjct: 20 TTADL--DGLFRIEGPQLLRYFARRL-GPEDAKDLAQETFLRFASLAAPQALDNPAAYLQ 76 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPS---PEERESQLETLQLLDSMLDGLNG 123 IA+ ++ D + NA L L PE A + P + +TL+ ++ L L Sbjct: 77 RIARNLLRDRAK-NATAARERTHLTLEPELHAANDGDPHQALVARQTLERYEAALMKLKP 135 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 KTRE +L +LDG++Y IA + +S+S ++K + KA+ H Sbjct: 136 KTREIYLRHRLDGVSYELIAQEWNMSVSGIEKQMMKAMAHI 176 >UniRef50_Q4KAM1 RNA polymerase sigma-70 family protein n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KAM1_PSEF5 Length = 172 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAKRVMV 74 LY +H L + + A+++ Q+ +LR +++ + +P +L I + + Sbjct: 14 LYLSHRTALVDYSAPIVGCRAQAEEVVQEAWLRFCGQADSAAQPSNPVGYLYRIVRNLSF 73 Query: 75 DLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 DL RR+ LE + + L+ E PSPE + + L+LL L L +TR AF + Sbjct: 74 DLLRRSTLENRHPDGADLLNELPSSTPSPEHQALHSDQLRLLQDALALLPERTRRAFHMH 133 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +L LT+ EIA +L +S S + V A+ HC Sbjct: 134 RLQHLTFQEIAAELKISSSLAHQLVRDALTHC 165 >UniRef50_Q07KX7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07KX7_RHOP5 Length = 171 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 6/153 (3%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNA-- 81 +K LT +L S+ A D QDT+LR+ +T+ + +P +++ +A D R NA Sbjct: 20 IKRRLTLRLGSSDLAGDALQDTWLRINHIDTVGVVNNPGNYIFGVAMNAARDRMR-NANS 78 Query: 82 --LEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTY 139 L A ++ L + + AP+P L++L+++L L + R+ L ++LD Sbjct: 79 RHLNAAEIDSLLEIADD-APAPAHVVEMKSELRMLETILQELPARQRDILLAARLDQTPR 137 Query: 140 SEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 EIA ++G+S+ V+K + +A E+CL R G Sbjct: 138 REIARRMGISLRLVEKELQRAQEYCLACRGRIG 170 >UniRef50_A7LTC1 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=A7LTC1_BACOV Length = 191 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 16/172 (9%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM--VSETLSTIRDPRSFLCTIAKR 71 E L H LK+++ R++ S DA+DI QD F +++ VS TL+ I S+L + + Sbjct: 12 ERLIEEHQPQLKAFIHRRVSSKEDAEDILQDVFYQLVKAVSNTLNPIEQVTSWLYRVTRN 71 Query: 72 VMVDLFRRNALEK----AYLEMLALMPEGG---------APSPEERESQLETLQLLDSML 118 +++ ++ + E+ AY E +++ E APSPE + Q L++ L Sbjct: 72 TIINKGKKKSEEEWPVSAYAEEESVLSEFSEVLFANDDLAPSPETEYMRSLVWQELEAAL 131 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L + R F L +L+GL+ E+A G S ++V AV+H L RLE Sbjct: 132 GELPAEQRTVFELMELEGLSVKEVAEATGASANTVLSRKHYAVKH-LRKRLE 182 >UniRef50_Q1YUE0 Putative RNA polymerase sigma factor n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YUE0_9GAMM Length = 176 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 8/157 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFD-ADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 +Y H L ++ K+ D A DI Q F RV + I++PR+ L + Sbjct: 10 IHEVYSRHRAELCRYVINKVNVTNDEAQDIVQAAFARV-IEMDFEQIKNPRALLYKTSYN 68 Query: 72 VMVDLFRRNALEKAYLEML----ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 + +D R + + + +++ + A M E SP+ L+++ L G+ K R Sbjct: 69 IAIDQVRHSGVRQRHVQAVVDADAKMVE--ELSPDRIHDGKRQLRIVVKALWGMPKKRRR 126 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 ++S+ DGL+Y+EI+ +G+S + V+K+V KA+ C Sbjct: 127 LMVMSRFDGLSYAEISRTVGLSETVVRKHVTKALLEC 163 >UniRef50_B4WD82 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WD82_9CAUL Length = 167 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 7/152 (4%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLF----RR 79 L +L RK Q+ DA+D+ Q+ F+R + + D R L IA+ + D + R+ Sbjct: 14 LIGYLQRKGQTIEDAEDVVQEAFVRFHRAGHDLSGADARPLLFVIARNLQTDRWKSAGRK 73 Query: 80 NALEKAYLEMLALMPEG---GAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 + L P AP+ ++ E L ++ L +TR+AFLL++ +G Sbjct: 74 GVRGTDDIHALDAGPRAVASDAPAADQHLIGRENLAAAARIIRALPPRTRDAFLLNRFEG 133 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 TYS+IA +LGVS+S V+K++A+A+ + R Sbjct: 134 QTYSQIAKRLGVSVSMVEKHIAEALRQLKISR 165 >UniRef50_D2LKP5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LKP5_RHOVA Length = 168 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 4/150 (2%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 +LY LK L R+ SA ADD QD F+R++ + + I+D R+++ +A+ V Sbjct: 10 ALYSNEQARLKRKLQRRGLSASSADDAVQDAFVRLL-RLSGADIQDKRAYINRVAETVAS 68 Query: 75 DLFRRNALEKAYLEMLALMPEG---GAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 + R A ++ A + + AP + + E + L++ + L + RE LL Sbjct: 69 NTMRGTRRGAAVIDPRAEVDDNVADAAPLADAKIISQEQIAALEAAISELPARCREVLLL 128 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 + +GL+Y+EIA LG++ ++V ++ KA+ Sbjct: 129 HKYEGLSYAEIAAHLGIAKNTVMVHMVKAL 158 >UniRef50_B0T7R4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0T7R4_CAUSK Length = 162 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 8/143 (5%) Query: 27 WLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAY 86 +L R+ QS DA+DI Q+ F R + L D R L IAK ++ D +++ E+A Sbjct: 11 FLQRRGQSLEDAEDIVQEAFARFHRAGHLIGQADSRPLLFAIAKNLLKDHWKQAGRERAR 70 Query: 87 LEMLALMPEGGA--------PSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLT 138 L A P+ + R + L + + + L + R+AFLL + + L+ Sbjct: 71 TLWLDTDDTTAAWENAPSEDPAADRRSIARQDLAGVAAAIRQLPPRCRDAFLLHRFEDLS 130 Query: 139 YSEIAHKLGVSISSVKKYVAKAV 161 Y +IA +LGVS+S V+K++A+A+ Sbjct: 131 YRQIADRLGVSVSMVEKHLAEAL 153 >UniRef50_Q4K5N5 RNA polymerase sigma-70 factor, ECF subfamily n=9 Tax=Pseudomonas RepID=Q4K5N5_PSEF5 Length = 170 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 88/158 (55%), Gaps = 4/158 (2%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAK 70 + + L+ H L+ +L RK++ A D+ Q++FLR+ I + + +L A Sbjct: 1 MDLKGLFLKHAAALRGYLARKIRDPQLAADLVQESFLRLAEHTRGERIDNSQGYLYRTAN 60 Query: 71 RVMVDLFRRNALEKAYL---EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +++D R+ A K E+LA + + A + +Q + L ++++ L +T+E Sbjct: 61 NLLIDHVRQEARRKTETVPHEVLADIEDEAAGLEAQAMAQQQRKALKQAIME-LPPRTQE 119 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 F L++++G+T++E+A L +S SSV+K++++A+ + + Sbjct: 120 IFRLNRIEGMTHAEVARHLNISDSSVQKHLSRALAYVM 157 >UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8D0 Length = 187 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 9/154 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF---LCTIA 69 FESL H L + R L DA+D+ QDT V ++L+ + +P +F + +A Sbjct: 25 FESLVDRHETKLLRFCLRTLGDRQDAEDVVQDTL--VQAWKSLNALSEPAAFGTWIYRLA 82 Query: 70 KRVMVDLFRRNALEKAYLEM---LALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 D+ RR + + +++ P+G A + E++ LQ S+L L+ + R Sbjct: 83 SNKCTDMLRRRMARPSDAQDPDDMSIHPDGRASVEKSVEART-ALQHFSSVLQTLSSEQR 141 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 A++L Q++GL+Y+E+A LG+S SV+ + +A Sbjct: 142 VAWVLHQMEGLSYAEVAATLGISEGSVRGRIHRA 175 >UniRef50_C1DIF0 RNA polymerase sigma factor, FecI family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DIF0_AZOVD Length = 188 Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 S + H L +L ++ S A+D+ Q+T+LR+ I +PR++L IA + Sbjct: 32 SAFIEHRDALLGYLRQRFGSPSLAEDLVQETWLRLARHTPERDIVNPRAYLFRIATNLGT 91 Query: 75 DLFRRNALE---KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 D R + +A E +A +P E +S + +LL+ ++D L + RE F+L Sbjct: 92 DHLRHQNMGVEIQAEDEEIAQVPAQAVDPAREVQSHDDLERLLE-IIDNLPPRCREIFIL 150 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 +++GL++++IA +L +S S+V + KA L RLE + Sbjct: 151 CRVEGLSHAQIAERLNISKSTVVSQMVKA-----LARLEQAM 187 >UniRef50_UPI0001B512A7 ECF subfamily RNA polymerase sigma-24 factor n=2 Tax=Streptomyces RepID=UPI0001B512A7 Length = 195 Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR----DPRSFLCT 67 F L H ++++L R SA +ADD+ QDTFLR + +T S R PR++L T Sbjct: 20 FTELVRVHASAVRAFLFRVSGSAAEADDLGQDTFLRAYSALQTYSPERRRKLKPRAWLMT 79 Query: 68 IAKRVMVDLFR---RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 IA V + R R+ + E +P PEER + +L + L L K Sbjct: 80 IAANVWRNHVRTSVRHPVSATRAEDACDTWVDESPGPEERAATSADRTVLVNALTELPEK 139 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 R A ++ + G++YS++A G + +VK V++ + Sbjct: 140 HRVAVVMRHVIGMSYSDMAEAQGCPVGTVKAQVSRGI 176 >UniRef50_D2BF54 RNA polymerase sigma factor n=10 Tax=Actinomycetales RepID=D2BF54_STRRD Length = 200 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 32 LQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEML 90 L + A+D+ Q+TFLRV+ S + R++L +IA+RV+VD FR A ++ Sbjct: 57 LAGSHSAEDLTQETFLRVLGSLPRFAGRSSARTWLLSIARRVVVDRFRSAAARPVVADLS 116 Query: 91 ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSI 150 P + + + L D +L + + REAF+L+QL GL Y+E A +G I Sbjct: 117 DWQAAAERCQPRGLPGREDGVALAD-LLAKVPRERREAFVLTQLVGLPYAEAAAMIGCPI 175 Query: 151 SSVKKYVAKA 160 +V+ VA+A Sbjct: 176 GTVRSRVARA 185 >UniRef50_Q217A1 Sigma-24 (FecI-like) n=3 Tax=Bradyrhizobiaceae RepID=Q217A1_RHOPB Length = 171 Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 30 RKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAY--- 86 R ++ A A+D+A +T+LR + I +FL A+ + +D RR L ++ Sbjct: 22 RIVRDAQAAEDVAHETYLRARKAIEAGPIDHIEAFLHQTARNLAIDHLRRKKLRGSFERN 81 Query: 87 --LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAH 144 + + PSPE+ Q E L+LLD L L + + ++LS++ Y IA Sbjct: 82 DHPDTTVMNVPANVPSPEDALIQRERLKLLDQALAQLPKRAQSVWILSRVRKWPYPRIAE 141 Query: 145 KLGVSISSVKKYVAKAVEHC 164 LGVS ++V + AV HC Sbjct: 142 HLGVSQNTVFNDLKLAVGHC 161 >UniRef50_D2K2C6 RNA polymerase sigma factor n=1 Tax=Mycobacterium chubuense RepID=D2K2C6_9MYCO Length = 235 Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 32 LQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMVDLFRRNALEK---AYL 87 L + ADD+ Q+TFLR + S + S R++L +IA+RV+VD RR+ A Sbjct: 66 LSNVGTADDLTQETFLRAIGSLPSFSGRSSARTWLFSIARRVVVDQIRRDRCRPRTCAAT 125 Query: 88 EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLG 147 ++ + + E + L +LDGL+ + R+A LL+Q+ GLTY+E A G Sbjct: 126 HFSNVVELSRFRGNRQAVAGFEDIVELRILLDGLDVERRQALLLTQVLGLTYAEAATVCG 185 Query: 148 VSISSVKKYVAKAVEHCL 165 + +++ VA+A E L Sbjct: 186 CPVGTIRSRVARAREQLL 203 >UniRef50_A8EWQ6 Sigma factor, ECF family n=2 Tax=Arcobacter butzleri RM4018 RepID=A8EWQ6_ARCB4 Length = 159 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 10/127 (7%) Query: 38 ADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNAL--EKAYLEMLALMPE 95 A DIAQ+TF+RVM E S + RSFL A+ +++D R+N +LE +P+ Sbjct: 22 AKDIAQETFVRVM--ELDSNKQINRSFLYKTARNIVIDELRKNKKFSHVEFLEETYSIPK 79 Query: 96 GGAPSPEERESQLETLQLLDSM--LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSV 153 P E +E Q + M ++ L +++EAF+ +DG + EIA +G+S ++V Sbjct: 80 YEQPD----EIVIEDNQYKNLMKIVNTLPSRSKEAFIFHAIDGYSRKEIAEIMGISQNAV 135 Query: 154 KKYVAKA 160 +K++ +A Sbjct: 136 EKHITRA 142 >UniRef50_Q1IGG5 Putative RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas entomophila L48 RepID=Q1IGG5_PSEE4 Length = 175 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 L+ H L++++ R+ +A A D+ Q++FLR+ I + +FL TIA ++ D Sbjct: 11 LFTEHKKALEAFVARRTGNAQVAADLTQESFLRLARLPADKQIDNLPAFLFTIASNLVRD 70 Query: 76 ----LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 + RR L+ A A+ E AP +E+ + + L+ + + L TR FLL Sbjct: 71 HQRQVIRRERLD-AGEPSEAIASE--APGADEQLASQQEQALMQAAIQALPEATRHIFLL 127 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +DG TY EI +LGV+ SV+ + +A+ C F Sbjct: 128 YHVDGCTYREIGERLGVTPRSVEYQLRRALLDCRAF 163 >UniRef50_A5FNM7 ECF subfamily RNA polymerase sigma-24 subunit n=7 Tax=Bacteroidetes RepID=A5FNM7_FLAJ1 Length = 171 Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 +++ T + F S + +H L+++L K + A+DI Q+ F+++ + + + Sbjct: 5 NQSDTCDEIIFSSFFKSHAKALRNFLLYKFGNIEQAEDITQEAFVKLWQNCASVPLEKAK 64 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPE----ERESQLETLQLLDSML 118 S++ TIA ++ + Y + + + SPE E++ Q + L+ + Sbjct: 65 SYIYTIANNSSLNQIAHQKVVLKYEKNFTGLDKTN-ESPEYILEEKQFQAKLLK----AI 119 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYV 157 + LN K R AFL+ ++DG YSEIA +L +S+ +V+K + Sbjct: 120 ENLNEKQRTAFLMHRIDGKKYSEIAAELNISVKAVEKRI 158 >UniRef50_Q2RUF6 Sigma-24 (FecI) n=2 Tax=Proteobacteria RepID=Q2RUF6_RHORT Length = 173 Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 5/149 (3%) Query: 19 THHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFR 78 T++ LK+++ R+ S A D+ QDT++R +E ++ + R++L +A + +D R Sbjct: 16 TYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAE-IAMPDNVRAYLYRMAANLAIDHLR 74 Query: 79 RNALEKAYL---EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 R+ L +L +P P+ + + + L +L + L K R FLL + Sbjct: 75 RDGARARGLCEETLLEDIP-SAEPAVDRVVAARQELAILSRAVAELPEKCRIVFLLYRGR 133 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 GLT ++A +LG+S +V+K++A+A+ HC Sbjct: 134 GLTMKQVAARLGISEKAVEKHIARAMVHC 162 >UniRef50_Q1QYP9 Sigma-24 (FecI-like) n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYP9_CHRSD Length = 178 Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 2/155 (1%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 T + L+ H L +L KL + A D+ QD +LR+ + + +PR++L IA+ Sbjct: 18 TLDRLFMEHSRELVGYLAGKLDTPELAADLCQDVYLRLQRARLTQPLANPRAYLFRIARN 77 Query: 72 VMVDLFR--RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 +++D R R E LE PE Q + L + + L R+A Sbjct: 78 LLIDHQRQARARPETIPLEDTTTGLACARHCPEADVCQAQRLACVRTCLRRQPRHVRQAL 137 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L +L+GL EIA +LGVS +Y+ +A+ C Sbjct: 138 LWHRLEGLPQREIAARLGVSERMAGRYIEQALRAC 172 >UniRef50_B5CYT2 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CYT2_9BACE Length = 187 Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR--SFLCTIAK 70 F+S + H+ L + DA+DI Q+ F+ V ++ L + + +++ T + Sbjct: 11 FKSRFQEHYSRLCRIAYGYVSDQDDAEDIVQELFISVW-NKRLDDMPEKEFAAYMTTSVR 69 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQ-LLDSMLDGLNGKTREAF 129 V R+ + ++ P + P+E + +TLQ +++S LD L + RE F Sbjct: 70 NSCVSFLRKRRDDTVSIDAY---PASASCMPDEGPEEGKTLQDIMESALDTLPARCREVF 126 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 LL++L GL Y EIA KL VS +V+ + KAV+ ++ E+G Sbjct: 127 LLAKLHGLKYREIAEKLEVSEKTVENQMTKAVKLLRMYVAEHG 169 >UniRef50_Q3ABF5 RNA polymerase sigma factor n=3 Tax=Clostridia RepID=Q3ABF5_CARHZ Length = 186 Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKR 71 FE + LK+++ +++ D +DI Q+ +++ + + L+ +S++ IAK Sbjct: 8 FEDFSKEFYQLLKNFIKKQVSQESDVEDILQEVMIKIYKNIDKLNDSSKLQSWIYQIAKN 67 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++D +R+ + + L SP E E Q L +M+D L R+A LL Sbjct: 68 TIIDYYRKQSKSIFLHDNLVFYS-----SPVESTFNKEIAQCLKNMIDHLPDPYRQAILL 122 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 ++ G T +++ KLG+S+S VK V +A Sbjct: 123 TEYHGFTQKKVSEKLGLSVSGVKSRVQRA 151 >UniRef50_Q2S652 Possible sigma-70 factor, ECF subfamily, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S652_SALRD Length = 194 Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 19/178 (10%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRD 60 SDR A F+++Y +++S + SA A D+AQDTF+R+ E+LS + Sbjct: 17 SDREAYAA--LFDAMYEPVFRYVRSITS----SAEAAQDVAQDTFIRLWEARESLSPSQS 70 Query: 61 PRSFLCTIAKRVMVDLFR----RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDS 116 ++L IA+ + R R+ E A + A P SP + Q + QL D Sbjct: 71 LEAYLYRIARNRAYNHERNRRTRDEKEPAVRDKTAAQPA----SPARPDDQADADQLEDR 126 Query: 117 M---LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + + L G+ REA +L++ +GL++ E A +G+S +V ++ +A++H L R+ Y Sbjct: 127 LWQWIGELTGRQREALVLTRFEGLSHEEAADVMGISPRTVNNHIVRALKH-LRGRVNY 183 >UniRef50_A4BY85 RNA polymerase ECF-type sigma factor n=1 Tax=Polaribacter irgensii 23-P RepID=A4BY85_9FLAO Length = 204 Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 11/130 (8%) Query: 38 ADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTIAKRVMVDLFRRNA----LEKAYLEMLAL 92 A DI Q+ F++V ++ ++T +S+L ++ +R+N LEK YLE + L Sbjct: 46 AQDIVQNVFVKVWSNKKNINTSFSIKSYLYKSVYNEFINQYRKNKPVFFLEKKYLESVDL 105 Query: 93 MPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISS 152 + E +E QL LQL+D + L K RE FLL++ +GLT+ EI+ L +SI + Sbjct: 106 VVENS----DENLDQL--LQLVDKEIRDLPPKCREIFLLNKKEGLTHIEISEHLNISIKT 159 Query: 153 VKKYVAKAVE 162 ++ ++ +A + Sbjct: 160 IEGHMTRAFK 169 >UniRef50_A3WYG2 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYG2_9BRAD Length = 166 Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 F LY G L+ ++R + A DI D FLR+ + + ++L A+ Sbjct: 8 FVELYLAESGRLQRRISRIVGCRTTASDIVHDIFLRLW-KRKQDGMNEASAYLSQSARNA 66 Query: 73 MVDLFRRNALEKAYLEMLA-----LMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +D R + Y+E +MP SP + + + L+ +D ++ L ++R Sbjct: 67 AIDHLRSERIRAQYIERTVPEQRFVMPS----SPHDIVAARDHLRYIDDVIRALPERSRH 122 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 FLL+++ G Y EIA LG+S +V+K++ +A++ Sbjct: 123 IFLLNRIHGRNYGEIARTLGISTGAVEKHMIRALK 157 >UniRef50_B0SXJ0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0SXJ0_CAUSK Length = 190 Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 3/142 (2%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFR--RNA 81 L+++ +R+ D DD+ Q+ LR+ + + + + +L +A V++D R R Sbjct: 27 LRAFFSRRA-PMNDVDDLVQEVLLRIQKRQPEAIVNNVEGYLFEVAANVLIDKGRADRTR 85 Query: 82 LEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSE 141 A+ E + SPE E + + L+ L +TR F+L + + ++Y Sbjct: 86 CRSAHTEFQEIHHPVDEMSPERVLQAREQMARALAALNELPERTRRVFVLVRFEEMSYKL 145 Query: 142 IAHKLGVSISSVKKYVAKAVEH 163 +A +LGVS+S+V+K+V KA+ H Sbjct: 146 VAQRLGVSVSAVEKHVMKALRH 167 >UniRef50_C3K3P3 Putative ECF-sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K3P3_PSEFS Length = 177 Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 3/154 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 L+ L++++TR+ SA A D+ Q++FLR+ ++ I + +FL TIA ++ D Sbjct: 11 LFAEQKKALEAFVTRRTGSAQVAADLTQESFLRLARLDSGEKIDNLPAFLFTIASNLVRD 70 Query: 76 LFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 +R A+ + L+ E G P +E+ + + QL+ + L TR+ FLL Sbjct: 71 -HQRQAIRRERLDAGEPSEELPCGNPGADEQLAAYQQEQLMQDAILALPEATRQIFLLYH 129 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +D L+Y EI +L ++ SV+ + +A+ C + Sbjct: 130 VDELSYREIGERLSITPRSVEYQLRRALIECRAY 163 >UniRef50_Q1N724 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N724_9SPHN Length = 201 Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 81/153 (52%), Gaps = 9/153 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 F+++ L+ L R L S + +D+ + R +E + R++L TIA+ + Sbjct: 11 FKTVILPQEAALRGRLRRILPSTHELEDMVAEVLARAYATENWENVTTGRAYLFTIARNL 70 Query: 73 MVDLFRRNALEK----AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 ++D RRN + A LE+L GG + E + E L+ ++ +++ L + R Sbjct: 71 VIDTARRNKVVSFETIADLELL-----GGENNIEAQLHAREALRQVEVIVESLPPQCRRV 125 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 F+L ++ + EIA ++ +S+S+V+K++AKA+ Sbjct: 126 FILRRIHEKSMLEIAEEMSLSVSTVEKHLAKAI 158 >UniRef50_D0XYI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XYI5_9CAUL Length = 225 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H +++WL R + D DD+ Q+ + R+ ++++ I R++ IA+ + ++ RR Sbjct: 52 HEADVRAWLRRSGSAPEDVDDVVQEAYCRLAGLDSVAHITSGRAYFFRIARNISIEKIRR 111 Query: 80 NALEK--AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGL 137 + + E+ AL PSPE + L + +++ L + R+ F L ++ GL Sbjct: 112 ARIVRIDCITEIDALHVVDDEPSPERVVASRRELSRVRRLIEDLPERCRQIFTLRRIHGL 171 Query: 138 TYSEIAHKLGVSISSVKKYVAK 159 + +IA +LGV+ + V+ A+ Sbjct: 172 SQKDIAARLGVTENVVETQAAR 193 >UniRef50_B1ZTK0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZTK0_OPITP Length = 189 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN--- 80 L+ +L R L + DA D+A D + R+ + I PR+FL T A+R+ ++ +R Sbjct: 20 LRRYLARMLGNRSDAQDLAHDAYARIYAAFEGERIDAPRAFLFTTARRLALNQLQRRRIA 79 Query: 81 ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYS 140 + + +++ L P G P E + L++ + L R LL +++GL+++ Sbjct: 80 PVREVDGKLIELAPAQG-PGVERVVMARQEWARLETAIAALPPGCRSVLLLCKVEGLSHA 138 Query: 141 EIAHKLGVSISSVKK 155 EI +LG+++S+V+K Sbjct: 139 EIGARLGIAVSTVEK 153 >UniRef50_Q1I538 Putative RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas entomophila L48 RepID=Q1I538_PSEE4 Length = 160 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 12/147 (8%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRV-----MVSETLSTIRDPRSFLCTIAKRVMVDLFR 78 +++ ++R++ A D+ QD FLR + E L T +L A + +D R Sbjct: 1 MEALVSRRIGCRATASDLVQDLFLRFWRRPEVKVEALDT------YLLRSAGNLAIDYLR 54 Query: 79 RNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGL 137 E L + E G+ +PE+ + LQ ++S L L +TR+ FLL+++ G Sbjct: 55 SEGSRGRAAEGLQINDDEPGSQAPEQALEVVHDLQRIESALRALPERTRQIFLLNRIHGC 114 Query: 138 TYSEIAHKLGVSISSVKKYVAKAVEHC 164 TY EIA + +S S+V+K++ +A+E C Sbjct: 115 TYGEIAKAMQLSQSAVEKHMMRALEAC 141 >UniRef50_D0XW70 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XW70_9CAUL Length = 200 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALE 83 L+S+L R+L S+ + DD+ QD L++ + IR P+ + + + +VDL+RRN Sbjct: 26 LRSYLARRLDSS-EIDDVIQDVMLKLHTRDGRWDIRFPKRYFYQVVRTTLVDLYRRNR-S 83 Query: 84 KAYLEMLALMPEGGAPSPEERESQLETLQLLDSM------LDGLNGKTREAFLLSQLDGL 137 + L PE P + S + LQ M L L +TRE L +++G Sbjct: 84 RCVQHHCELSPET---HPRDELSPIRILQARQEMAAAREALAQLPDRTREILLAVRVEGQ 140 Query: 138 TYSEIAHKLGVSISSVKKYVAKAV 161 + +A + G+S S+V+K++ + + Sbjct: 141 SLKAVAARHGISTSAVEKHITRGL 164 >UniRef50_B0T5U0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0T5U0_CAUSK Length = 187 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 29/165 (17%) Query: 21 HGWLKSWLTRKLQSAFD---ADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLF 77 H + + +T L+ D A+D+ Q+ LR + + I P F+ TIA ++ D Sbjct: 24 HAYRRPLMTYFLRHTGDYAEAEDLTQEALLRALRAGAGEAIETPDGFVFTIASNLLRDRA 83 Query: 78 RRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLL------DSMLDG----------- 120 R+ +A ++L P G E+ E LQL D +L G Sbjct: 84 RKRITRQAD-RHVSLYPPGDG------ETAAEPLQLATEDFPADRVLMGKEKLRRTLDAL 136 Query: 121 --LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 L +TRE F+L +++ L +EIA +LG+S+S+V+K+V +AV H Sbjct: 137 AELPDRTREIFILFRVERLRQTEIAARLGISVSAVEKHVVRAVAH 181 >UniRef50_A4XWB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas mendocina ymp RepID=A4XWB2_PSEMY Length = 210 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKRVMVD 75 Y L + TR L A+D+ QD FL++ S LS + P +L + + + +D Sbjct: 43 YQAQRHALLNLATRVLGCRSRAEDVLQDAFLKLWEGSLNLSRVDAPERYLTRLVRNLSID 102 Query: 76 LFRRNALEK---AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 RR LE+ A E+ L P +P + Q QLLD++ + L + R F LS Sbjct: 103 HLRRLQLEQRHGAAGELADLQPSEISPE-QAVGGQQAVRQLLDALAE-LTPRMRRVFTLS 160 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 QLDGLT E+A +LG S + + + + HC Sbjct: 161 QLDGLTQREVATQLGASPALISLILRDTLGHC 192 >UniRef50_Q1H1L6 Sigma-24 (FecI-like) n=2 Tax=Methylophilaceae RepID=Q1H1L6_METFK Length = 171 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 4/128 (3%) Query: 38 ADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNA----LEKAYLEMLALM 93 A D+ D +R +S + P ++L TI + ++VD ++ + L + + Sbjct: 33 ACDVLHDALIRFAISSNAGRMEQPHAYLRTIVRNLLVDGYKDQSRFLPLVDEEIGASYEL 92 Query: 94 PEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSV 153 + APS E + L +L +++D + + +E F+L +++GL EIA KLG+S++ V Sbjct: 93 EQPVAPSTEHLLDMQQRLSILLNIIDHMPARCKEVFVLFRIEGLAQQEIAEKLGISVNMV 152 Query: 154 KKYVAKAV 161 +K++ +A+ Sbjct: 153 QKHIMRAM 160 >UniRef50_A8UKN6 RNA polymerase ECF-type sigma factor n=3 Tax=Flavobacteriales RepID=A8UKN6_9FLAO Length = 170 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 5/170 (2%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D S TFE++Y T+ ++ +L K Q A+DI QD F+++ + + + Sbjct: 4 DNRNICHSKTFETIYKTYAKDIRRFLFFKTQDIDKAEDILQDVFIKLWDNCSKVDYNKVK 63 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 S++ +IA + ++ + + + + + E SPE + E ++ L+ + L+ Sbjct: 64 SYMYSIANNMFLNEIKHQKVVQNFSKYNK--KESTNESPEFIMLEKEFMEKLEDTIASLS 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 K RE FL+++++ Y +IA +L +S+ +V+K + +A+ ++ R E G Sbjct: 122 EKQREVFLMNRIEKKKYKDIALQLDISVKAVEKRMHQAL---VIMRKEIG 168 >UniRef50_A8EUT3 Sigma factor, ECF family n=2 Tax=Campylobacterales RepID=A8EUT3_ARCB4 Length = 157 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 75/137 (54%), Gaps = 7/137 (5%) Query: 27 WLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAY 86 ++ K+ + +A DI Q+T+ +V+ + I + R+ L +AK +++D R+N K Y Sbjct: 11 YIKDKIPNKDNAQDIVQETYEKVISIKNSKEIENERALLYKVAKNIIIDRLRKN---KNY 67 Query: 87 LEMLALMPEG---GAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIA 143 E ++ E + +PE+ + +L L L K +EAF+L L+G T EIA Sbjct: 68 KE-ISYEEENFISQSKAPEDLAIEQNQQDILMKELKKLPPKRKEAFVLHILEGYTKEEIA 126 Query: 144 HKLGVSISSVKKYVAKA 160 + + +S +V+K++++A Sbjct: 127 NIMNISYLAVEKHISRA 143 >UniRef50_C5SQB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SQB2_9CAUL Length = 177 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 87/161 (54%), Gaps = 3/161 (1%) Query: 5 ATTTASLT-FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 ATT ++ F++L L + TR+ S+ DA+++ Q+ F+R++ + L + + Sbjct: 7 ATTNPTVAHFDTLVRRLRNPLMRFFTRRTGSSADAEELVQELFVRLLRRQDLLALENVDG 66 Query: 64 FLCTIAKRVMVDLFRRNALEKA--YLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 ++ A ++ D RR+ + + + ++ L APS E+ + L L LD L Sbjct: 67 YVFETAANLIRDKARRDIVRASDRHDDVTGLSLATDAPSAEDSLVSRQRLARLIKALDTL 126 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + + +L + + ++Y+EI KLG+S+S+V+K++ +A++ Sbjct: 127 PPRAQAIVMLRRFEEMSYAEIGKKLGISVSAVEKHMVRAMD 167 >UniRef50_B0SXL1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. K31 RepID=B0SXL1_CAUSK Length = 180 Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 19 THHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD--L 76 TH L+ + +R+ A +A+D+ QD FL V + S I + +L T+A V+V Sbjct: 26 THGARLRRYFSRRAPRA-EAEDLVQDVFLHVQAARLDSPIVEVERYLFTVAHNVLVSHAR 84 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 RR A + G SPE S + + ++++ L +TR AF L++ + Sbjct: 85 RRRGGSVDAQRTLWEFSEAAGGLSPERILSARQDYARVMAVIERLPPRTRLAFRLNRFEE 144 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEH 163 L+Y IA ++G++ SVK+ + +A H Sbjct: 145 LSYGAIAERMGITKDSVKELLRRAHAH 171 >UniRef50_A4VQR4 PpiC-type peptidyl-prolyl cis-trans isomerase n=4 Tax=Gammaproteobacteria RepID=A4VQR4_PSEU5 Length = 392 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 74/144 (51%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y H L + LTR A+D+AQD +L++ ++ +P+++L IA ++ D Sbjct: 15 YVHHRQRLVAHLTRLGGCRALAEDLAQDAWLKLAQVMPEQSLDNPKAYLFRIATNLLRDA 74 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 R AL A E + E P L+ + LD L + R+ F L++L+G Sbjct: 75 LRHRALVGAGDEAPLELIEAVQADPCGLVEHQCALRCVLRQLDDLPPRCRQVFELARLEG 134 Query: 137 LTYSEIAHKLGVSISSVKKYVAKA 160 L+ +EIA +LG+S+++V +AKA Sbjct: 135 LSQAEIAERLGISVNTVIAQLAKA 158 >UniRef50_Q2IY00 Sigma-24 (FecI-like) n=1 Tax=Rhodopseudomonas palustris HaA2 RepID=Q2IY00_RHOP2 Length = 193 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 9/134 (6%) Query: 38 ADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGG 97 ADD QDT++R+ SE + +R+P ++L A ++L R + E+ AL+ Sbjct: 56 ADDALQDTYVRLNGSEVVGEVRNPVAYLLRAAFNNALNLRRAETRRLSADEVDALL-HIA 114 Query: 98 APSPE-----ERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISS 152 +P+ E S +E L+ ++ L + RE L +++DGL+ EIA +LG+S+S Sbjct: 115 DDAPDVLRIIEGRSDIERLK---RIMTELTPRQREILLAARVDGLSRHEIADRLGISVSL 171 Query: 153 VKKYVAKAVEHCLL 166 V+K + +A E C+L Sbjct: 172 VEKELRRAQEFCML 185 >UniRef50_B1ZVB3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVB3_OPITP Length = 203 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 6/158 (3%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H L+S+L + D DD+ Q+++ R++ + + ++FL T A+ +DLFRR Sbjct: 37 HESSLRSYLRGLFPTLTDVDDVVQESYARLIRARQAGRVTYAKAFLFTTARNAALDLFRR 96 Query: 80 NAL----EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 + L L+++ E P + E L LL + L + R+ L L Sbjct: 97 RKVVAIDAVGDLSDLSVLEER--PDAADAADHQERLDLLAEAVRLLPDRCRQVVTLRLLY 154 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 GL++ EIA +L +S +VK +AKA+ C F +GL Sbjct: 155 GLSHKEIAAELRISEHTVKAQLAKAMRRCTHFFEVHGL 192 >UniRef50_C9KVM7 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KVM7_9BACE Length = 183 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCTIAKR 71 FE Y ++ +K++ +S DA+DIAQ+ FL++ L ++ S+L T+ + Sbjct: 12 FERFYAANYPRVKNFAKLLTKSEEDAEDIAQNIFLKLWTRPELWQEQETMTSYLYTVTRN 71 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPE-----ERESQLETLQLLDSMLDGLNGKTR 126 + +LF+ +E+ Y + + G E E E L L+ LD L K R Sbjct: 72 EIFNLFKHQKVEQEYEDKIMKAQLIGDLCDEDTSLLENLYYKEVLLLVKMTLDQLPPKRR 131 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 + F +S+ +GL++ EIA KL + + +V+ ++ K + Sbjct: 132 QIFEMSRFEGLSHKEIAEKLQIPLRTVEDHIYKTL 166 >UniRef50_Q2RRP8 Sigma-24 (FecI) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RRP8_RHORT Length = 179 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 25/168 (14%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST---------IRDPRSFLC 66 L+ H L + T + + A+D+ Q+ +LR + T + P +L Sbjct: 10 LFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTALERPVGYLY 69 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGA---------PSPEERESQLETLQLLDSM 117 I + + VDL RR L+ A M +GGA PSPE+ + L+ + Sbjct: 70 KIVRNLAVDLSRR-------LKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVAQA 122 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L L +TR AF L + + T++EI +LG+S + V +A+ HCL Sbjct: 123 LASLPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHSLVHEALAHCL 170 >UniRef50_B4REQ6 RNA polymerase sigma-70 factor,ECF subfamily n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4REQ6_PHEZH Length = 272 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 SD A + L+ H WL+S+L R+ + A+D+ Q+ F R + I +P Sbjct: 116 SDAAEIVTATDAGLLFRQHRSWLQSFLARRFGAEL-AEDLVQEAFSRC--ARVSGAISNP 172 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 R+ L T+A+R D FRR E+A + PEGG QLE + L+ ++ L Sbjct: 173 RALLATLARRAAADQFRR---ERAPETVGVAEPEGGY-----LPDQLERV-LVQQLVREL 223 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 K RE +LL ++ GLTY+E A + G+S+ V+ + +A Sbjct: 224 PPKVREVYLLVRVVGLTYAEAAERCGISVKRVEARMTEA 262 >UniRef50_A9BM45 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BM45_DELAS Length = 174 Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 9/155 (5%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 + E ++ G L R L++ ADD QDT+LRV + + I P ++ Sbjct: 9 SLEEVFIASRGQLVRVARRILRNPELADDAVQDTYLRVAEMRSDAEIAKPAAYWTRAVCN 68 Query: 72 VMVDLFRRNALEKAY------LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 + +D RR E +Y +E L + P+ +P ESQ ++L+D LD + KT Sbjct: 69 MALDYLRRQERENSYRTHGVDVETLEI-PDSRSPERLLFESQ--AIRLIDQALDEVPPKT 125 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 RE F L ++ GLT +IA + ++ V +A A Sbjct: 126 RETFELYRIKGLTQRQIAEHMECALGLVNARIADA 160 >UniRef50_D0J1W9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J1W9_COMTE Length = 152 Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 5/146 (3%) Query: 30 RKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEK-AYL 87 RK++ A D+AQ+++ RV+ + + I +P + L +A R +D+ RR + + + Sbjct: 2 RKVRDRDTAADLAQESYARVLSMQQKGQVILEPGALLRQVALRAKIDMDRRAEVRQHQNI 61 Query: 88 EMLALMPEGGAP---SPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAH 144 + L + +P PE + +++Q ++GL + R+AF + D L EIA Sbjct: 62 DSLEERDQPASPLHLQPEHVYASSQSIQAYLDTIEGLPPRCRDAFCMYIFDELPNKEIAE 121 Query: 145 KLGVSISSVKKYVAKAVEHCLLFRLE 170 ++GVS+S V +Y+++ C R+E Sbjct: 122 RMGVSLSMVNQYISRGKLACAARRME 147 >UniRef50_Q1NGV5 Probable sigma-70 factor, ECF subfamily protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGV5_9SPHN Length = 188 Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 6/159 (3%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 T +F Y L + TRKL + DAD+ +Q+T R + + ++ PR++L Sbjct: 20 TGERFSFTDFYRREKPRLMRFFTRKLGNRADADEFSQETLTRFVRAAPHPSLGSPRAYLT 79 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEG----GAPSPEERESQLETLQLLDSMLDGLN 122 IA ++ D R + + L L+ +G + P + L ++L L Sbjct: 80 RIATNLLRDHAERGSTRLS--RQLTLLEDGVNAISSLDPHRDVQSRQELARWTAILQQLP 137 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 +T E FLL++++G +Y +IA LG + V+K++ KA+ Sbjct: 138 PRTLEIFLLNRVEGCSYRQIASDLGEPLWVVQKHMLKAI 176 >UniRef50_Q39RW4 Sigma-24 (FecI-like) n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39RW4_GEOMG Length = 206 Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 10/152 (6%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP---RSFLCTI 68 T E ++ +H L++++ ++ ADD Q+ FL++ L +++D +S+L I Sbjct: 27 TSEQIWQEYHLRLRAFIKSRIADDAVADDTLQNVFLKMHAG--LPSLKDGTKLQSWLYQI 84 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+ ++DL+R LA PE +P E+ Q E L M+ L REA Sbjct: 85 ARNAIIDLYRSQKASTGIPVSLA-HPES---NPGEKAVQ-ELSDCLQPMIQRLPEIYREA 139 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 +LS+L+GLT E+A LG S+S K V + Sbjct: 140 IILSELEGLTQREVAEVLGTSLSGAKSRVQRG 171 >UniRef50_A6LGM3 RNA polymerase sigma factor n=2 Tax=Parabacteroides RepID=A6LGM3_PARD8 Length = 193 Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 90/167 (53%), Gaps = 6/167 (3%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTIA 69 L F+S+Y ++ + +++ L + +A+D+ Q+ F+R+ +L ++ S++ TIA Sbjct: 17 LAFQSVYESYSAHIYNFIYSLLYNRLEAEDLTQEVFVRIWEKRGSLDIDKNFDSYIFTIA 76 Query: 70 KRVMVDLFRRNALEKAYLEMLAL---MPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 + ++ D + ++L A L M +L E P EE + Q +DS++D L R Sbjct: 77 RNLVYDEW--DSLFHAELYMKSLEADWDERDTPKVEEDITVNSIGQYIDSLIDKLPVSRR 134 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 E FLLS+ + L+ EIA +L +S +V+ + ++++ + E G+ Sbjct: 135 EIFLLSRKEHLSTKEIAQRLSISERTVEAQIYRSLQFLRKYLAEEGI 181 >UniRef50_B0T4N8 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Caulobacter RepID=B0T4N8_CAUSK Length = 197 Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 6/165 (3%) Query: 2 SDRATTTASLT---FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI 58 SD A A+L F++L + L S+ R+ DA+D+ Q+ F+R+ Sbjct: 21 SDAAEPRAALDAPRFDTLVSRYRRPLLSFFQRRSVGIEDAEDLTQEVFMRLSRRFARLHW 80 Query: 59 RDPRSFLCTIAKRVMVDLFR--RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDS 116 +P + T+A ++D R R+ ++E+ +P+ PS E + E L+ L + Sbjct: 81 GNPDGLVFTVAANALIDHERHERSRQRDRHVEVDPGLPDE-EPSAETALAGRERLRGLVA 139 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 LD L+ R AF+L + + LT +E A +LG+S+S+V+K++ A+ Sbjct: 140 ALDTLSPSVRAAFVLCRFENLTQAEAAARLGLSVSTVEKHMMTAL 184 >UniRef50_C4XM95 RNA polymerase ECF-type sigma factor n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XM95_DESMR Length = 189 Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 18/168 (10%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 E ++ H L++++ R++ DDI QD F + + + PR +L + + Sbjct: 5 LEIMWIAHRDELRAFIARRVPCQAAVDDILQDVFCKTLSHLAQGHVTQPRGWLFAVTRTT 64 Query: 73 MVDLFR--RNALE-KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 + D +R R +E + L + P GAP L M+D L K R Sbjct: 65 IADHYRSRRPTVELPSSLASASPDPSVGAPR--------AMGACLKPMIDALPEKMRAPL 116 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKA-------VEHCLLFRLE 170 +++ +G+ E+A +LG+S+++VK V +A +E C L+ Sbjct: 117 VMADYEGMRQREVASRLGISLAAVKSRVLRARLQMRRMIEECCQLELD 164 >UniRef50_C7PKU4 Transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PKU4_CHIPD Length = 226 Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 ++ R + FE LY T+H L + L+S A+D + F++V V E L ++ Sbjct: 40 LAARLRNSDHTAFEELYATYHQLLYGTAYKYLKSDTAAEDAVHEAFVKVWVHREELDPVQ 99 Query: 60 DPRSFLCTIAKRVMVDLFR--RNALEKAYLEMLALMPEGGAPSPEERESQL---ETLQLL 114 R+FL K +++L R + +L K Y E+L A + ES + + +++ Sbjct: 100 GVRNFLFKCLKFHVLNLIRDHKRSLSKQY-ELLY----NAAADHRDTESTVILNDYRKVV 154 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVK-KY--VAKAVEHCL 165 + ++ L+ + ++ F L +GL+ E+A KLG+SI++VK +Y +KA+ H L Sbjct: 155 ERAVESLSAQKKKIFRLRSYEGLSNEEVAEKLGLSINTVKFQYAQASKALRHVL 208 >UniRef50_C5SN44 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SN44_9CAUL Length = 159 Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 30 RKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEM 89 RK S DA+DI Q + RV E +R + L T A R+ D RR A E Sbjct: 17 RKGISPQDAEDIVQSAYTRVHAFEQREIVRSQEALLITAAVRLAYDERRRQD-RAAMFEK 75 Query: 90 LALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLG 147 + +P AP P+E + L LD L +TR L +LDGLTY +IA G Sbjct: 76 VDEVPSVADDAPLPDEILRAQQRTARLKEGLDRLPERTRRILLSRRLDGLTYKQIAQIEG 135 Query: 148 VSISSVKKYVAKA 160 + ++++K VA+A Sbjct: 136 STEAAIEKQVARA 148 >UniRef50_Q82VN0 Possible sigma-70 factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82VN0_NITEU Length = 157 Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 63/107 (58%), Gaps = 2/107 (1%) Query: 58 IRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLAL--MPEGGAPSPEERESQLETLQLLD 115 I + R+ L IA+ +++D +RR ++ + +L P A P+ + + LQ + Sbjct: 24 ITESRALLYRIARNLVIDRYRRGQVQGWTTDNHSLENFPAQRACEPDALVASSQVLQAVL 83 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + +D L + REAF+L + DGL++SE+A +G+S +V++++ A++ Sbjct: 84 TTIDALPLRCREAFILHRFDGLSHSEVAEHMGISRKAVEQHIQHAMQ 130 >UniRef50_C5SKW0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKW0_9CAUL Length = 174 Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T TA L+ +Y L +LTR A+D+ QD +LR+M I +P +FL Sbjct: 2 TPTARLS--EIYFAKRDVLLRYLTRLCGDEASAEDVLQDLYLRLMRGGIEGEIEEPLAFL 59 Query: 66 CTIAKRVMVDLFRRNALEKAYLEML-ALMPE--GGAPSPEERESQLETLQLLDSML---D 119 +A + ++ R A E AL P+ G A + + E+ + Q L ++L D Sbjct: 60 FRMANNLWLNRRRTLTRRDAREEAWQALNPQMTGEADAAPDAEAVVGGRQALRAVLNDID 119 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L +TR+ F + +L+GL+ +E+A +L +SISSV+K+++ A++H L Sbjct: 120 ALPPRTRDIFRMHKLEGLSQTEVARRLEISISSVEKHLSSALKHLL 165 >UniRef50_B1ZTN9 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZTN9_OPITP Length = 164 Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 10/150 (6%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKR 71 E+LY H L ++ ++ A A+D+ QDTF+R + S L T PR++L IA+ Sbjct: 8 LEALYRDHSRALIAYFRQQRALAPQAEDLLQDTFVRAIRSLGRLCTSVSPRAYLFGIARH 67 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 V +D R + L E AP+ +++LE L++ + L RE LL Sbjct: 68 VSLDALRSPRPPEPLLR------EPDAPASPAEDARLEFLRV---AIARLPAAQRETLLL 118 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 L+Y EIA L + I +V+ + AV Sbjct: 119 KLQHDLSYEEIAEVLAIPIGTVRSRLHHAV 148 >UniRef50_Q7UQU8 RNA polymerase sigma-70 factor (ECF subfamily) n=1 Tax=Rhodopirellula baltica RepID=Q7UQU8_RHOBA Length = 206 Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 14/142 (9%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP---RSFLCTIAKRVMVDLFRRN 80 L+++L R++ +A A+D+ Q+TF+R+ L+ + D RS++ IA+ ++VD +R Sbjct: 36 LRTFLLRRVSAAQVAEDLLQETFVRIHTK--LNEVDDQQRIRSWVFQIARNLVVDHYRSK 93 Query: 81 ALEKAYLEMLALMPEGGAPSPEERESQLETLQL--LDSMLDGLNGKTREAFLLSQLDGLT 138 + E A L G ERE LE + + L ML L + REA L ++ GL+ Sbjct: 94 SREAAALADEIAA--NG-----EREESLEDVVIGWLPKMLAQLPEEQREAVELYEIQGLS 146 Query: 139 YSEIAHKLGVSISSVKKYVAKA 160 EIA+KLG+S+S K V + Sbjct: 147 QQEIANKLGLSLSGAKSRVQRG 168 >UniRef50_Q2Y7Y7 Sigma-24 (FecI-like) n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y7Y7_NITMU Length = 169 Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 10/155 (6%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 ++ H L+ + L + A+D+ QD +L+V + + ++ P ++L + + + +D Sbjct: 12 VFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAYLFQMVRNLAID 71 Query: 76 LFRRNALEKAYLEMLALMPEGG--APS----PEERESQLETLQLLDSMLDGLNGKTREAF 129 RR + E E + G PS PE E L+L+ + L +TR AF Sbjct: 72 HHRRISFELNLFEG----EDNGLHVPSHIGMPEATVISREHLKLVAKAISELPERTRRAF 127 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L +L+G T+ IA +L +S S V + +A++HC Sbjct: 128 ELHRLEGQTHRAIAAELAISTSLVNILIHEALDHC 162 >UniRef50_A6EFD9 Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EFD9_9SPHI Length = 189 Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIA 69 L +E +Y + L + R LQ +A D+ QD F + +TL ++L + Sbjct: 22 LAYEEIYHRYWALLFNHGRRILQDDEEAKDLVQDAFAVLWKDGKTLVLKTSLSAYLYAVI 81 Query: 70 KRVMVDLFRRNALEKAYLEMLA-LMPEGGAPSPE-ERESQLETLQLLDSMLDGLNGKTRE 127 + + DL R ++ YLE L + E S RE QLE + ++ + L K RE Sbjct: 82 RYKVFDLIDRQKVKNGYLESLEHFIAENNYSSDHLVREKQLEVI--IEKEIAALPAKMRE 139 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 F LS+ L+Y EIA KL +S ++VKK + A++ Sbjct: 140 IFELSRKANLSYLEIAQKLNISDNTVKKQINNALK 174 >UniRef50_B8HG32 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Arthrobacter RepID=B8HG32_ARTCA Length = 189 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 21/173 (12%) Query: 1 MSDRATTTASLTFESL---YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST 57 ++ RA + FE+L YG H +++ R S DADD+ Q+ V + L + Sbjct: 13 LAGRAADGDTAAFEALARRYGPH---MRACARRLTGSYADADDVVQEAL--VQAWKQLES 67 Query: 58 IRDP---RSFLCTIAKRVMVDLFRR-------NALEKAYLEMLALMPEGGAPSPEERESQ 107 +R+P + +L +A +D RR +ALE++ L P AP PE Sbjct: 68 LREPAAVKGWLLRLAGSRSIDYLRRRRNHTSLSALEES---GAGLEPAATAPGPESSAVA 124 Query: 108 LETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 + L + L L + R ++L + +G +Y +IA L +S +SV+ +A+A Sbjct: 125 SSGTEALKAALSRLPEEQRRCWVLKEFNGQSYEQIAQTLNISPASVRGRLARA 177 >UniRef50_B4WB57 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WB57_9CAUL Length = 167 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 L + L++++ ++ + DADDI+Q+ + RV+ + ++DP ++ +A ++ D Sbjct: 11 LLAKNAVRLRAFVRSRVHNDADADDISQEAYARVLARSRATPLKDPVAYAFRVALNLLSD 70 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 R A + E + APSP E + L L + RE F+L Q Sbjct: 71 QRRPGAPD--VNEPIDDAAASDAPSPFEVLDMKQRADLFTRALQRMPRLRREVFVLRQSA 128 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKA 160 L+Y EIA +L +S+ + +K+ ++A Sbjct: 129 DLSYPEIAARLNISVEAAQKHFSRA 153 >UniRef50_Q0C430 RNA polymerase sigma-70 factor, ECF family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C430_HYPNA Length = 222 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T++A ++ T + L + ++++ DA+DI Q FL + + R L Sbjct: 32 TSSAVSPLTYIFRTQYRQLLRFCRIRVRNDADAEDIVQGAFLAARRAYPDKGTDELRPLL 91 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPE----GGAPSPEERESQLETLQLLDSMLDGL 121 T+ + + R ++ E + + E +P+PE++ E L + ++++ G+ Sbjct: 92 FTLVRNTALSHLRAPWSKRHQGEDIGAIGEQLACPASPNPEKQLMDAERLAIAEAVVSGM 151 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 + + + A L + +GL+Y EIA +L +S ++VKK+VA+AV Sbjct: 152 SARRQAALRLHRYEGLSYEEIARRLSISSTAVKKHVARAV 191 >UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY18_9BACT Length = 187 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 7/161 (4%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF---LC 66 ++ FE L+ + + ++ + DADD+ Q+TF++V ++ + +F + Sbjct: 23 NIAFEYLFERYKEAIHRLFIQRTNNPLDADDLLQETFIKVYIN--IHRYNPAYTFGQWVY 80 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 TIA+ VD RR E ++ P P+PEE + + ++ L + + R Sbjct: 81 TIARNTFVDFIRRRQ-EDLPIDDKFTAPPSNNPTPEENIIRKQQRTQIERYLQAMPPRYR 139 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH-CLL 166 + ++ + +Y EIA KL + + +VK + +A E C L Sbjct: 140 QLIVMRFFEEYSYEEIAMKLELPLGTVKTQIHRAREQMCRL 180 >UniRef50_A9FAK3 Putative RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FAK3_SORC5 Length = 207 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS---- 63 ASL F+++Y H ++ L R S DD QD F V+V L +PRS Sbjct: 39 PASLDFDAVYDEHADFVWRNLRRLGVSEASLDDAFQDVF--VVVHRRLGEF-EPRSSVKA 95 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L I RV D RR K LE L AP P ER Q+E L+L+D++L L+ Sbjct: 96 WLFAILCRVARD-HRRLVRRKGGLEELPGGVADRAPGPAERLEQVEALKLVDALLAELDD 154 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSV 153 R ++++++ L+ EIA L + +++V Sbjct: 155 DKRAVLVMAEIEELSAPEIAAALDLKLNTV 184 >UniRef50_Q0C5P2 RNA polymerase sigma-70 factor, ECF family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5P2_HYPNA Length = 171 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 12/159 (7%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAF-----DADDIAQDTFLRVMVSETLSTIR 59 A + +L FE LY ++ W L R+L+ AF + +D+AQ F R +R Sbjct: 2 AGRSNTLAFEELYRSY--WKD--LCRQLRRAFGSGPPEPEDVAQAAFARFAELGDPEQVR 57 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLA---LMPEGGAPSPEERESQLETLQLLDS 116 +PR+ L A+ +++D RRN AY + + SPE +E L+++ Sbjct: 58 NPRALLLVTARNIILDHKRRNGRHMAYARTIQAELINAPHNDISPERALIDMERLEIVKR 117 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKK 155 +D L K + L + G TY +I + G S V + Sbjct: 118 AIDTLPHKQKVVLSLHRHHGYTYQQIVAETGWSYGDVYR 156 >UniRef50_A1B2I3 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Rhodobacteraceae RepID=A1B2I3_PARDP Length = 175 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIAKRVMV 74 LY L+ + R++ + A D+ D FLR E +R +P +F+ A+ V + Sbjct: 19 LYLDEGARLERQIARRIGNRSIARDLVHDVFLRFW--ERAGELRGNPAAFVTRSARNVAI 76 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDS------MLDGLNGKTREA 128 D RR + A+ A+ P PSP R+ + L S ++ L TR Sbjct: 77 DHLRREKVRNAH--AAAIEP----PSPP-RDPAFDALSARQSGDAVRKAIEALPETTRRL 129 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 FL+++ GL++ EIA G+S +V K++AKAV C Sbjct: 130 FLMNRAQGLSFHEIAAICGMSERNVAKHMAKAVACC 165 >UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Comamonadaceae RepID=A1W8K1_ACISJ Length = 222 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFL-------RVMVSETLS 56 RA F L + + +L R +S DA ++AQ+TFL R LS Sbjct: 53 RAQRGEVAAFSELVARYQDRIYRFLFRMTRSQEDARELAQETFLNAYQALPRWQPDAQLS 112 Query: 57 TIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE---GGAPSPEERESQLETLQL 113 T +L IA+ +DL RR A A++E+ + E P+PE + ++ Sbjct: 113 T------WLFRIARNQALDLLRR-AQRVAFVELDETLSEQMPADTPTPEAALQARQRIEA 165 Query: 114 LDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 L+ L L+ + RE LL ++ + Y +IA LG+S+ +VK +A+A Sbjct: 166 LEGALQRLSVEHREILLLRDIEDMAYEDIAEVLGISLGTVKSRIARA 212 >UniRef50_A6KXC2 RNA polymerase ECF-type sigma factor n=6 Tax=Bacteroides RepID=A6KXC2_BACV8 Length = 200 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF---LCT 67 + F L+ + + + ++ A+DI QD FL V E IR +SF L T Sbjct: 21 IAFSHLFSFYKSQVLYYCVHFVKDKEIAEDITQDIFLTVW--EKKEDIRIEQSFSAFLYT 78 Query: 68 IAKRVMVDLFR----RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 IA+ + D+FR R+ L + +E + S EE+ + +L+ L+ L+ Sbjct: 79 IARNRIYDIFRSLSARSVLYEKLMEQAIDYVDDVEKSLEEKNIK----ELIAQALEQLSP 134 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + RE F LS+ GL++ EIA +LG+S+ +V+ ++ A+E Sbjct: 135 RQREIFELSRNRGLSHKEIAEQLGLSVYTVQDHIKNALE 173 >UniRef50_C3REX9 RNA polymerase ECF-type sigma factor n=2 Tax=Bacteroides RepID=C3REX9_9BACE Length = 173 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 68/133 (51%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y + ++K++++ ++ ++A+D+ Q+ F+R++ + + FL TIA+ ++ D Sbjct: 16 YTEYGSFIKNYISYRIPHKYEAEDLTQEVFIRLLDYKQFINPETIKPFLLTIARNLITDN 75 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 R + Y + + G + E+ E L++S + L K R + LS DG Sbjct: 76 IRLYYKIENYTSKIYETIKSGIENTEQTILANELAALINSRMKHLPDKRRTTYHLSLYDG 135 Query: 137 LTYSEIAHKLGVS 149 L+ SEIA +L +S Sbjct: 136 LSVSEIAERLHIS 148 >UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F885_ACIC5 Length = 236 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 13/164 (7%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDP-RSFLCT 67 S + L THH + + R S+ DA+D+ QD FL+V + + T R ++++ T Sbjct: 57 SGAWTELVQTHHRRVYALCYRFTGSSSDAEDLTQDVFLKVYGNLRSFDTERGSFQTWITT 116 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGG-----------APSPEERESQLETLQLLDS 116 + + ++VD FRR+ ++A M E P P +R Q + +L+ Sbjct: 117 LTRNLLVDHFRRSKQQRATSSMDEGWDEADDLPLTQRLAQPGPDPHDRAVQRQLEKLVQE 176 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 L ++ + REA +L L L Y EIA L V +VK +++ Sbjct: 177 ALVKISPELREAVILRDLQDLDYKEIAQILRVPEGTVKSRISRG 220 >UniRef50_B5GQI4 RNA polymerase ECF-subfamily sigma factor n=4 Tax=Streptomyces RepID=B5GQI4_STRCL Length = 212 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 3/152 (1%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFL---RVMVSETLSTIRDPRSFLCTI 68 FE+LY + WL++ L + DD Q+ FL R+ +RD +L I Sbjct: 8 AFEALYRRYAPWLRARLGYRCADITQLDDAVQEAFLSVWRICARGHPPEVRDCAGWLWRI 67 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+R ++D R + + ++LA + G PS EE+ + + L L + R Sbjct: 68 AERRLIDAARTHRSQGRLHQLLAGLRRPGVPSAEEQALEAGEFSGAHTALRRLPEELRAV 127 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 + +DGLT + A +LG+ + +VK +A Sbjct: 128 VQATVIDGLTTRQAADRLGLPVGTVKTRAMRA 159 >UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QRQ4_CHLT3 Length = 188 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 7/133 (5%) Query: 27 WLTRK-LQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC---TIAKRVMVDLFRRNAL 82 W+ R+ L+S DADD+AQ+ F+++ L + F IA ++ R + Sbjct: 36 WVCRRMLKSHDDADDVAQNVFVKIY--HALDKFNEASQFFTWAYRIAANESINYMRSQKV 93 Query: 83 EKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSE 141 +A L+ L P G P+E + E +L++ + L K R+ F++ + L+Y E Sbjct: 94 RQAVGLDTLMSEPAGKESHPDEHLEKTEQSKLIEEAIARLPEKQRKVFVMRYYEELSYEE 153 Query: 142 IAHKLGVSISSVK 154 IA LG S+ +K Sbjct: 154 IAESLGTSVGGLK 166 >UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacteria RepID=A7HRP1_PARL1 Length = 218 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 13/138 (9%) Query: 30 RKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-----RSFLCTIAKRVMVDLFRRNALEK 84 R L S DA+D+AQ+ FLRV T + +P ++L +A + +D R+N + Sbjct: 64 RMLGSQADAEDVAQEVFLRVW---TNAGKWEPGRAQFSTWLHRVATNLCLDRLRKN---R 117 Query: 85 AYLEMLALMPEGGA--PSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEI 142 E + +PE + P P+ R Q E + +++ L L + R A +LS GLT E Sbjct: 118 GGTEDIDAIPEPASEEPGPDRRLEQSELAERVEAALQALPERQRAAIVLSHYQGLTNIEA 177 Query: 143 AHKLGVSISSVKKYVAKA 160 A LG+++ +V+ +++A Sbjct: 178 AEILGITVEAVESLLSRA 195 >UniRef50_Q3BMR0 RNA polymerase ECF-type sigma factor, FecI family n=3 Tax=Xanthomonadaceae RepID=Q3BMR0_XANC5 Length = 175 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 15/162 (9%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS--ETLSTIRDPRSFLCTIA 69 + L+ H L+ + R+ + DA+D+ Q+T+LR++ + + I +P ++L T+A Sbjct: 8 AWARLFTEHGPVLRGFFVRRGANE-DAEDLVQETYLRLLRAHQQPGQAIANPEAYLYTVA 66 Query: 70 KRVMVDLFRRNALEKAY-------LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 V+L R A+ + +E A G E+ + + Q L ++L GL Sbjct: 67 ----VNLAREQAVRRKQAPLRIEDMERFAQRLVAG-DDVEDSAQRQQRQQRLQTVLAGLP 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 + R ++ DGL+Y +IA +LGVS VKKYV + + C Sbjct: 122 ERVRAVLVMQYRDGLSYKQIAERLGVSSHMVKKYVVRGLSAC 163 >UniRef50_D0THQ1 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0THQ1_9BACE Length = 194 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSF 64 T L F L+ ++ L + R + +DI QD F + + + +++ RS+ Sbjct: 20 TEDNRLAFHRLFELYYPALCMYAKRFITDKETREDIVQDVFFAIWENRSRISVKTSARSY 79 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L T A+ ++ +RN E+ Y ++ A S EE + E LL LD L Sbjct: 80 LVTCARNHCLNYLQRNH-ERYYESLIQEQIPIYAESSEELYTWEELQTLLRQALDKLPEN 138 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 R AF ++ + +Y EIA ++ +SI +V++Y KA E Sbjct: 139 YRLAFEKNRFENKSYGEIAEEMQISIRTVERYKNKATE 176 >UniRef50_A7A9W6 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7A9W6_9PORP Length = 184 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 82/153 (53%), Gaps = 8/153 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKR 71 F+ LY + LK +LT +++ +A D+ QD F ++ + ET+S + +++L +A+ Sbjct: 21 FDMLYIQYSPRLKHFLTGFIKNRDEASDMTQDIFYKIWTNRETISKVDSFKAYLFRMARN 80 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEE---RESQLETLQLLDSMLDGLNGKTREA 128 ++ D + + +E+ Y + EE RE L L+D ++ + + R Sbjct: 81 MIYDYYEHSLIEENYQQKEQRRSTYDDLIEEELYARELSL----LIDIAVEKMPPQRRNI 136 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 F++S+ DGL+ EIA +L +S +V+ ++ +A+ Sbjct: 137 FIMSRKDGLSNEEIAQRLNISKRTVENHMTQAL 169 >UniRef50_C6Y1F4 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y1F4_PEDHD Length = 208 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCTIAK 70 +F LY L + + R ++ A +I QD F++V L P ++L IAK Sbjct: 34 SFHELYNRFSVQLYANILRMVRDQDLAQEILQDVFVKVWEKRELIDPEKPFNAYLFRIAK 93 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQL---ETLQLLDSMLDGLNGKTRE 127 + D FR+ A+EK ++ M G + E +L E+ QL + +D L+ + ++ Sbjct: 94 NTVYDHFRKIAMEK---KLETHMLSNGTETYSHIEEELIYKESSQLFLNAIDKLSPQRKQ 150 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 F L +L+G +Y E+++ L +S S+V ++ K+ Sbjct: 151 VFTLCKLEGKSYHEVSNLLSISTSTVSDHLLKS 183 >UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ1_DESAH Length = 190 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 15/136 (11%) Query: 37 DADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL---FRRNALEKAYLE----M 89 DA D+ QD F+ V ++L + R + L T R+ V F + KA E M Sbjct: 42 DARDVTQDVFM--AVYKSLGSFRQE-AKLSTWVYRIAVTRSLNFVKKRKRKARFEQVRDM 98 Query: 90 LALMPEGGAPS-----PEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAH 144 L E G S PE+ Q E Q+L LD L + AF LSQ DG+ Y+EIA Sbjct: 99 LTFKEEAGLESASVTTPEKELEQQEEFQVLQQALDSLPKNQKIAFTLSQYDGVKYAEIAA 158 Query: 145 KLGVSISSVKKYVAKA 160 + +ISSV+ + +A Sbjct: 159 IMDTTISSVESLIFRA 174 >UniRef50_C7PUM1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUM1_CHIPD Length = 198 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 10/155 (6%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKR 71 F L+ + LK + A +++A + L+V + +ST++D S+L T+ + Sbjct: 22 FRPLFEHYFPRLKRYAAGFSGDAVTGEELAMNVLLKVWQQKARISTVKDFDSYLFTMMRH 81 Query: 72 VMVDLFR-RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLD---SMLDGLNGKTRE 127 ++ + R R + ++ E A P+PE + +LL LD L + RE Sbjct: 82 EVISMIRQRKTITDSFTESTA-----ETPAPENINDTISYRELLRRYRQCLDKLPPRRRE 136 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 AF+L++ G++Y+EIA L VSI +V+ ++A +++ Sbjct: 137 AFILNREKGMSYAEIAAALNVSIFTVQNHIASSLK 171 >UniRef50_A7IJ28 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IJ28_XANP2 Length = 260 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 17/161 (10%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 F++L H L R +QS A+D+ +D +++ E + P FL + + + Sbjct: 39 FDTLLA-HRARLVRMAFRIVQSRHLAEDVVEDVAVKLCEGEGVIAADHPAPFLYRLVRNL 97 Query: 73 MVDLFRR---------NALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +D RR +A E A++ M P ER Q E L+++ LD L Sbjct: 98 AIDRARRLKRERSLAGSAEEAAHVAMPCA-------CPLERLEQREMLEVVIRALDTLPP 150 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +TR AFL ++DG+ +IA LGVS + V V A + C Sbjct: 151 RTRLAFLRHRIDGMPQKDIAEHLGVSRTLVNFMVRDATKVC 191 >UniRef50_Q04XI2 RNA polymerase sigma subunit n=4 Tax=Leptospira RepID=Q04XI2_LEPBL Length = 199 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 11/160 (6%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF---LCTI 68 +FE L + G + S + + ++ +A+D QD FL+ E+LST + F L I Sbjct: 27 SFEILMNRYQGLIYSQVIKAFRNETEAEDFTQDIFLKAF--ESLSTFQGRSQFSTWLFVI 84 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMP---EGGAPSPEERESQL---ETLQLLDSMLDGLN 122 A+ ++ +RR E + L+ L L E + E+E++L E + + S+++ L Sbjct: 85 ARNEIIRRYRREHPEISGLDTLLLTESEVEKKNETSSEQETKLLKQEISEKIRSLVESLP 144 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 R+ +L + ++Y EI+ KL + ++++K Y+ + E Sbjct: 145 ELYRKPIMLHYFENMSYKEISQKLNLKMNTLKSYIFRGKE 184 >UniRef50_A4ABH4 RNA polymerase ECF-type sigma factor n=2 Tax=unclassified Gammaproteobacteria RepID=A4ABH4_9GAMM Length = 182 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 14/149 (9%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR--SFLCTIAK 70 F L TH L + R L ADD+ Q+TFLR+ R ++L IA Sbjct: 21 FGELLKTHQQPLVRYARRMLSDPGAADDVVQETFLRLWTRAGSYKSSSARLTTWLHNIAH 80 Query: 71 RVMVDLFRRNAL-----EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 + VD FRRNA +++ LE+ PEG A S ++ + + L+GL + Sbjct: 81 NLCVDSFRRNARLSFTDDESQLEVTTAGPEGDAES-------TDSAHRVRTALEGLPERQ 133 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVK 154 R A L+ GL+ E A L VS+ +++ Sbjct: 134 RSALLMCHYQGLSNREAATVLDVSVDALE 162 >UniRef50_B6IY15 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IY15_RHOCS Length = 167 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 T ++L+ T L + ++L SA DA+D QDT+L+ +++ P + L Sbjct: 2 TQPPAPIDALFQTRRRALYALAFQRLGSAADAEDAVQDTYLKCR-DVAWGSVQSPEAMLT 60 Query: 67 TIAKRVMVDLFRRNA----LEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 I V+ D+ RR L A +P AP PEE L+ + +D L Sbjct: 61 RIHLNVIHDIRRRRRRSVELADADGSEAVCIP-AAAPDPEETLLARRRLRAAQAGIDALP 119 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 R F L ++DGL++++I+ G+S +V+K++ +A++ Sbjct: 120 PVCRRVFTLCRIDGLSHADISAVTGLSRPAVEKHIVRAMQ 159 >UniRef50_A5V579 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V579_SPHWW Length = 216 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 2/151 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAF-DADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 LY H + ++ R S D D+AQ F + + + I +PR+FL A+ +++ Sbjct: 56 LYRHHRDTIVRYVRRAFGSGPPDPADVAQAAFEKFLAIDGRDDIANPRAFLIASARNLVL 115 Query: 75 DLFRRNALEKAYL-EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 D RR + Y + A E SPE E ++L+ + ++ + R+ ++S+ Sbjct: 116 DQRRRLKVRSDYASDARATADETDDFSPERVLVAKEQWRILEDAIQKMDARRRDILVMSR 175 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 + GL+ +EIA ++ S + VK +A+A+ C Sbjct: 176 IHGLSSAEIARRMNCSATLVKMLLAQALVLC 206 >UniRef50_Q3SU83 Sigma 24, ECF subfamily n=3 Tax=Nitrobacter RepID=Q3SU83_NITWN Length = 165 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 12/160 (7%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET--LSTIRDPRSFLCTIAK 70 + L+ H + +L R+ +A A DI QDTFLRV+ S T +P+++L +++ Sbjct: 5 LQKLFIRHAREIDRFLRRRGHNAETAADITQDTFLRVLASPPGEARTNHNPKAYLYQVSR 64 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGA-----PSPEERESQLETLQLLDSMLDGLNGKT 125 + ++ RR +L + + E GA PS E+ + L L L +T Sbjct: 65 SLSINHLRRESLIQT-----TDLDEAGAIADPTPSAEKIIYSRQCLAQTRKALAELPERT 119 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 R AF + +L T E+A +LGVS S K + H L Sbjct: 120 RMAFEMHRLCDKTIQEVADELGVSTSRAWKLIRNGYRHLL 159 >UniRef50_B8H2U3 RNA polymerase ECF-type sigma factor n=3 Tax=Caulobacter RepID=B8H2U3_CAUCN Length = 201 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Query: 37 DADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNAL--EKAYLEMLALMP 94 D +D+ + F R + +T + +P +F I + +D RR + A + + P Sbjct: 42 DPEDLVHEAFARAIACKTWREVGNPGAFATRILRNCALDALRRRKVLTITAVADFDRIEP 101 Query: 95 EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVK 154 APS E L+LL + L + R F L ++ L+ EIA +LG+S+S+V+ Sbjct: 102 LDEAPSAHAVLESREELRLLADAIAELPTQCRRVFTLRKVYSLSPDEIAVRLGLSVSTVE 161 Query: 155 KYVAKAVEHC 164 K++ K + +C Sbjct: 162 KHLVKGLRYC 171 >UniRef50_C7PNV1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PNV1_CHIPD Length = 223 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 E+L+ T+ ++ + R +QS A+D+AQD F+++ +++L A + Sbjct: 48 EALFRTYFSFVCKTIYRIVQSNATAEDLAQDVFIKIWNRRAELHQVYFKAYLHRAAINMA 107 Query: 74 VDLFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +D +N ++ M M P AP+ + S +T + + +D L K RE F+LS Sbjct: 108 LDYLDKNKRRGVHMPMEEYMEPVQAAPAGQ---SLHQTTRHIQQAIDKLPEKCREIFILS 164 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + + L+Y EIA L +S+ +V+ + A++ Sbjct: 165 RYEELSYREIATTLNISVKTVENQMMTALK 194 >UniRef50_C8ZVX9 RNA polymerase sigma-70 subunit n=1 Tax=Enterococcus gallinarum EG2 RepID=C8ZVX9_ENTGA Length = 154 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 14/151 (9%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 E +Y ++ ++ + +++ + A+D+ QD F++V ++ + D +L TIAK + Sbjct: 3 EEIYQIYYEKIQHYFQKRVGDEYQAEDLTQDVFVKVFLALPKTKPDDFERWLFTIAKFTL 62 Query: 74 VDLFRRNALEKAYL----EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 D +RR K YL E+ LM E P E + LE + L ++ L K R Sbjct: 63 YDFYRR----KRYLLVAEEVDTLMQE----IPIEDQDSLEKEEAL-RHVNQLPNKLRHPL 113 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 +L+ + G +Y EIA L +++S+VK V +A Sbjct: 114 ILA-IRGYSYQEIAEILNLTLSTVKSRVFQA 143 >UniRef50_D1C6H5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6H5_SPHTD Length = 182 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 2/163 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 M+D A +T FE L H + +++ R ++ +A D+ Q+TFLR + L Sbjct: 1 MTDSAGSTRGTVFEDLVTRHQAEIYAYIYRMVRHDGEAQDLCQETFLRAFRAFSGLQGTP 60 Query: 60 DPRSFLCTIAKRVMVD-LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 + R++L IA ++ L RR E+A + P P + + L +++ + Sbjct: 61 NYRAWLYRIATNTTLNALRRRRTGERAAATLTRAQPVAVDGDPAGDLDRRDLLDRIEAAI 120 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 L K R A + GL Y+EIA LG+S + + V +AV Sbjct: 121 AALPVKQRLALTQRRFQGLGYAEIAESLGMSEDAARANVYQAV 163 >UniRef50_B0A679 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A679_9CLOT Length = 181 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 10/158 (6%) Query: 10 SLTFESLYGTHHGWLKSWLTRK-LQSAFDADDIAQDTFLRVMVS----ETLSTIRDPRSF 64 + FE +YG + + W+ + L D +++ QD+F++++ + E +++ + +SF Sbjct: 14 KIKFEDIYGKYKKMM-FWIANQILNDERDIEEVVQDSFIKIIRNLDKIEKINS-KKTKSF 71 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 + I K +D++R+N K +E L PS E +E ++E L ++ + L Sbjct: 72 ISIIVKNTAIDVYRKNLSNKVEVE---LDDNFIFPSDELKEVEIEGLNNIEIAIMKLTEI 128 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 +E FLL L +EIA L + S+V+ +A+ E Sbjct: 129 YKEVFLLKYSHELENNEIAKLLNIKESTVRVRLARGKE 166 >UniRef50_Q15VP4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15VP4_PSEA6 Length = 189 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 5 ATTTASLTFESLYGTHHGWLKSWL-TRKLQSAFDADDIAQDTFLRVM----VSETLSTIR 59 A SL + LY + L+ ++ R + D +D+ Q+ + R++ + + LS Sbjct: 15 ARDENSLLVKQLYDEYGSALRRFIRVRSRLNDSDCEDVMQEVYERLLKLDDLPQKLSGRM 74 Query: 60 DP-RSFLCTIAKRVMVDLFRRNAL--EKAYLEMLALMPEGGAPSPEERESQLETLQLLDS 116 D R++L IA +++D RR + + A++ SPE + L+ +++ Sbjct: 75 DTVRNYLFQIATHILIDRDRRAKVRCKDAHVSEQDTAIFTSLFSPERALQNRKQLREIET 134 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 L + ++AF+L++++G++Y EI+ LGVS+S+V+KY++ A+ Sbjct: 135 ALAEIKTSHKQAFMLNRVEGMSYREISDALGVSVSTVEKYISAAL 179 >UniRef50_A8TM19 Sigma-24 (FecI-like) protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM19_9PROT Length = 300 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 8/148 (5%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H L+ R L S DADD+ QD +LR ++ + IR+P ++L TI R+ +D R Sbjct: 11 HRPRLRGLAYRMLGSVADADDVLQDAYLRWHGADD-TVIREPLAWLTTIVSRLCIDRLRA 69 Query: 80 NALEK-AYLEMLALMP--EGGAPS---PEERESQLETLQL-LDSMLDGLNGKTREAFLLS 132 E+ AY+ P + APS P+ R+ Q + L + +L+ L+ R AFLL Sbjct: 70 VKTEREAYVGPWLPEPWLDHPAPSKTRPDARQDQADDLSVAFLLLLERLSPDERAAFLLH 129 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKA 160 + + Y EIA L S ++ ++ V +A Sbjct: 130 DVFEIGYPEIAGTLNRSEAACRQMVHRA 157 >UniRef50_D2QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRQ4_9SPHI Length = 193 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 12/155 (7%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 F +LY H L + RKL+ A D+AQ+ FLR+ I + ++L T K + Sbjct: 23 FRTLYERHWYDLFTLAKRKLRDEAMASDMAQELFLRLWQKRRTLLINNVGAYLTTSLKHL 82 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQL------LDSMLDGLNGKTR 126 +VD R + Y P P + + L ++Q L+ L+ L KTR Sbjct: 83 IVDHVRTQLQGEQYASHFIHTP------PTDTLNTLHSVQFSQLTESLNQALEQLPDKTR 136 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 E F+L++ + LT EI+ +LG+S +++ +++++V Sbjct: 137 EVFVLNRFEQLTIREISARLGLSEKAIEYHLSRSV 171 >UniRef50_B6ITM9 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Rhodospirillum centenum SW RepID=B6ITM9_RHOCS Length = 201 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 37 DADDIAQDTFLRVMVSETLST-IRDPRSFLCTIAKRVMVDLFRRNA--LEKAYLEMLALM 93 D +D Q+ + RV+ + I+ R L A V +D FRR+ L ++++L+ Sbjct: 57 DIEDHIQEVYCRVLATAAQQKKIQSWRGILLRTASTVWIDQFRRDRARLRDHHVDLLSEN 116 Query: 94 PEGGAPS--PEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSIS 151 PS PE+ + TL+ +++ L L R+AF+L++ +G ++ +IA +LG+ Sbjct: 117 DAHADPSASPEDVAAARRTLRDVEAALMELEPICRQAFMLARYEGFSHRDIAERLGIPTV 176 Query: 152 SVKKYVAKAVEH 163 SV ++V +A+ H Sbjct: 177 SVGRHVERALAH 188 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P23484 Probable RNA polymerase sigma factor fecI n=27 T... 258 4e-68 UniRef50_C4XCZ5 RNA polymerase sigma factor n=9 Tax=Enterobacter... 245 5e-64 UniRef50_Q1GXU3 Sigma-24 (FecI-like) n=1 Tax=Methylobacillus fla... 198 6e-50 UniRef50_A9BWH7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 196 3e-49 UniRef50_Q4KKE1 RNA polymerase sigma-70 factor, ECF subfamily n=... 192 4e-48 UniRef50_Q48ML0 RNA polymerase sigma-70 family protein n=19 Tax=... 190 2e-47 UniRef50_Q39ER9 Sigma-24 (FecI-like) n=6 Tax=Proteobacteria RepI... 187 1e-46 UniRef50_A6T3U0 RNA polymerase sigma-70 factor, ECF subfamily n=... 187 2e-46 UniRef50_Q6FBE7 Alternative RNAP sigma factor required for fecA ... 184 9e-46 UniRef50_Q2L2C6 RNA polymerase ECF-family sigma factor (Fragment... 184 1e-45 UniRef50_A6SZM0 RNA polymerase sigma-70 factor, ECF subfamily n=... 183 1e-45 UniRef50_A6SVZ7 RNA polymerase sigma-70 factor, ECF subfamily n=... 182 4e-45 UniRef50_B0KIQ2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 182 6e-45 UniRef50_B3PJT4 RNA polymerase sigma factor, sigma-70 family n=1... 181 7e-45 UniRef50_A6T181 RNA polymerase sigma-70 factor, ECF subfamily n=... 180 2e-44 UniRef50_C3K1F8 Putative iron-related RNA polymerase sigma facto... 180 2e-44 UniRef50_C6DJA9 RNA polymerase sigma factor n=6 Tax=Enterobacter... 180 2e-44 UniRef50_Q82VL0 Probable sigma-70 factor, ECF subfamily n=2 Tax=... 180 2e-44 UniRef50_A6SXC6 RNA polymerase sigma-70 factor, ECF subfamily n=... 179 3e-44 UniRef50_A6SX54 Uncharacterized conserved protein n=3 Tax=Proteo... 178 5e-44 UniRef50_B3PJT7 Probable fecI Specialized sigma subunits of RNA ... 178 7e-44 UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma su... 178 8e-44 UniRef50_Q88Q31 RNA polymerase sigma-70 factor, ECF subfamily n=... 178 9e-44 UniRef50_Q88IB3 RNA polymerase sigma-70 factor, putative n=2 Tax... 177 9e-44 UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acineto... 177 1e-43 UniRef50_A6W1Y2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 177 2e-43 UniRef50_C1DDL3 Sigma factor, FecI family n=3 Tax=Proteobacteria... 176 3e-43 UniRef50_A9BUB1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 4e-43 UniRef50_C3JY07 Putative RNA polymerase sigma factor n=1 Tax=Pse... 175 4e-43 UniRef50_D0J502 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 5e-43 UniRef50_A6SZL5 RNA polymerase sigma-70 factor, ECF subfamily n=... 175 6e-43 UniRef50_C1DFE8 ECF sigma factor, FecI family n=5 Tax=Gammaprote... 174 1e-42 UniRef50_A4XVR2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 174 1e-42 UniRef50_C6DKM4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 174 1e-42 UniRef50_B4SLV1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 5e-42 UniRef50_B0KPG3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 5e-42 UniRef50_B9P6N4 Predicted protein n=8 Tax=cellular organisms Rep... 171 9e-42 UniRef50_B1JF11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 2e-41 UniRef50_C6CDZ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 2e-41 UniRef50_B0KJM4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 2e-41 UniRef50_B7UW20 Probable sigma-70 factor, ECF subfamily n=12 Tax... 169 4e-41 UniRef50_A5W6M8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 169 4e-41 UniRef50_D0J6Z4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 4e-41 UniRef50_C6XBX6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 7e-41 UniRef50_Q4KBG5 RNA polymerase sigma-70 factor, ECF subfamily n=... 167 2e-40 UniRef50_D1P6G0 RNA polymerase sigma factor, sigma-70 family n=4... 167 2e-40 UniRef50_D1ST93 RNA polymerase, sigma-24 subunit, ECF subfamily ... 166 3e-40 UniRef50_A9C155 RNA polymerase, sigma-24 subunit, ECF subfamily ... 166 3e-40 UniRef50_Q6FD19 Putative RNA polymerase sigma factor n=1 Tax=Aci... 165 4e-40 UniRef50_A1BCE5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 165 4e-40 UniRef50_B4EXQ8 ECF-family sigma factor n=7 Tax=Enterobacteriace... 165 7e-40 UniRef50_Q52208 PupI protein n=1 Tax=Pseudomonas putida RepID=Q5... 164 8e-40 UniRef50_B3PLR0 RNA polymerase sigma factor, sigma-70 family n=1... 163 2e-39 UniRef50_A6EA47 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 163 2e-39 UniRef50_D0S2J0 Putative uncharacterized protein n=1 Tax=Acineto... 163 2e-39 UniRef50_B1KAJ1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 163 2e-39 UniRef50_B0KPE9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 162 4e-39 UniRef50_C4SII1 DNA-directed RNA polymerase specialized sigma su... 162 4e-39 UniRef50_Q2L0R0 RNA polymerase sigma factor n=1 Tax=Bordetella a... 162 4e-39 UniRef50_Q4KDP7 RNA polymerase sigma-70 factor, ECF subfamily n=... 162 5e-39 UniRef50_C4TZ61 Sigma factor, ECF subfamily n=1 Tax=Yersinia kri... 162 6e-39 UniRef50_B7VA10 Probable sigma-70 factor, ECF subfamily n=6 Tax=... 161 1e-38 UniRef50_Q4K9A6 RNA polymerase sigma-70 factor, ECF subfamily n=... 160 1e-38 UniRef50_C2G377 RNA polymerase ECF family sigma factor n=2 Tax=S... 160 1e-38 UniRef50_B7X446 Transcriptional regulator, LuxR family n=1 Tax=C... 160 2e-38 UniRef50_A9IDD4 RNA polymerase sigma factor n=6 Tax=Proteobacter... 159 3e-38 UniRef50_A5VWU6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 6e-38 UniRef50_A5FNM7 ECF subfamily RNA polymerase sigma-24 subunit n=... 158 6e-38 UniRef50_A4STR8 RNA polymerase sigma factor FecI n=3 Tax=Gammapr... 158 7e-38 UniRef50_C6X945 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 8e-38 UniRef50_C1DIP0 RNA polymerase sigma factor, FecI family n=1 Tax... 158 8e-38 UniRef50_C6W4E3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 1e-37 UniRef50_A8UKN6 RNA polymerase ECF-type sigma factor n=3 Tax=Fla... 157 1e-37 UniRef50_Q1LG57 Sigma-24 (FecI-like) n=2 Tax=Burkholderiaceae Re... 157 1e-37 UniRef50_A6VD05 Probable sigma-70 factor, ECF subfamily n=9 Tax=... 157 2e-37 UniRef50_C6XVW4 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 157 2e-37 UniRef50_D0TET6 RNA polymerase sigma factor n=2 Tax=Bacteroides ... 156 2e-37 UniRef50_C6X947 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 4e-37 UniRef50_B7KZS3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 155 7e-37 UniRef50_D0TT72 Putative uncharacterized protein n=3 Tax=Bactero... 155 8e-37 UniRef50_B0KLJ1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 154 1e-36 UniRef50_D1W083 RNA polymerase sigma-70 factor n=2 Tax=Prevotell... 153 2e-36 UniRef50_Q4KBX1 RNA polymerase sigma-70 factor, ECF subfamily n=... 153 2e-36 UniRef50_C3Q8S3 RNA polymerase ECF-type sigma factor n=8 Tax=Bac... 153 2e-36 UniRef50_C7PNV1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 153 2e-36 UniRef50_B5CYT2 Putative uncharacterized protein n=1 Tax=Bactero... 153 2e-36 UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 153 2e-36 UniRef50_A6KXC2 RNA polymerase ECF-type sigma factor n=6 Tax=Bac... 153 2e-36 UniRef50_C6DBT2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 153 2e-36 UniRef50_A7A9W6 Putative uncharacterized protein n=1 Tax=Parabac... 153 2e-36 UniRef50_C6Y3R1 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 153 2e-36 UniRef50_D2QTW1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 153 2e-36 UniRef50_Q2RUF6 Sigma-24 (FecI) n=2 Tax=Proteobacteria RepID=Q2R... 153 2e-36 UniRef50_A6EHU0 Putative ECF-type RNA polymerase sigma factor n=... 153 3e-36 UniRef50_C1DIF0 RNA polymerase sigma factor, FecI family n=1 Tax... 152 4e-36 UniRef50_Q7W4H7 ECF-family sigma factor n=2 Tax=Bordetella RepID... 152 4e-36 UniRef50_UPI000174534D RNA polymerase, sigma-24 subunit, ECF sub... 152 4e-36 UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinom... 152 5e-36 UniRef50_C5PSA3 RNA polymerase sigma factor n=1 Tax=Sphingobacte... 152 5e-36 UniRef50_C3QHX8 RNA polymerase ECF-type sigma factor n=7 Tax=Bac... 152 5e-36 UniRef50_A6EEU5 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 152 6e-36 UniRef50_A8ICQ0 RNA polymerase sigma-70 factor n=1 Tax=Azorhizob... 152 7e-36 UniRef50_B0KMD3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 151 8e-36 UniRef50_C7PJ73 RNA polymerase, sigma-24 subunit, ECF subfamily ... 151 1e-35 UniRef50_B7S233 RNA polymerase sigma factor, sigma-70 family n=1... 151 1e-35 UniRef50_Q13G71 Sigma-24 (FecI) n=3 Tax=Burkholderiaceae RepID=Q... 151 1e-35 UniRef50_Q3K822 Putative RNA polymerase sigma factor n=1 Tax=Pse... 150 2e-35 UniRef50_A4BY85 RNA polymerase ECF-type sigma factor n=1 Tax=Pol... 150 2e-35 UniRef50_D0MD44 RNA polymerase, sigma-24 subunit, ECF subfamily ... 150 2e-35 UniRef50_Q21KS5 Sigma-70, region 4 type 2 n=1 Tax=Saccharophagus... 150 2e-35 UniRef50_A6LGM3 RNA polymerase sigma factor n=2 Tax=Parabacteroi... 150 3e-35 UniRef50_Q4K9E5 RNA polymerase sigma-70 factor, ECF subfamily n=... 150 3e-35 UniRef50_Q1GQ36 RNA polymerase, sigma-24 subunit, ECF subfamily ... 149 3e-35 UniRef50_Q4KGY1 RNA polymerase sigma-70 factor, ECF subfamily n=... 149 3e-35 UniRef50_Q82WW0 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 149 3e-35 UniRef50_C9KVM7 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 149 4e-35 UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 149 4e-35 UniRef50_Q21I31 Sigma-70, region 4 type 2 n=2 Tax=Gammaproteobac... 149 5e-35 UniRef50_D0KIJ0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 148 6e-35 UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Coryneb... 148 6e-35 UniRef50_B6IXY1 RNA polymerase sigma-70 factor. ECF family prote... 148 8e-35 UniRef50_C6Y1G9 RNA polymerase sigma factor, sigma-70 family n=1... 148 8e-35 UniRef50_D0TF22 Putative uncharacterized protein n=1 Tax=Bactero... 148 8e-35 UniRef50_C5SQB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 148 9e-35 UniRef50_D1PZC2 DNA-directed RNA polymerase sigma subunit RpoE n... 147 1e-34 UniRef50_A4YQ88 Putative sigma-70 factor, ECF subfamily n=1 Tax=... 147 1e-34 UniRef50_C6W1C1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 147 1e-34 UniRef50_C6W0L2 Transcriptional regulator, LuxR family n=1 Tax=D... 147 1e-34 UniRef50_C6Y1F4 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 147 2e-34 UniRef50_C6XUX4 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 147 2e-34 UniRef50_C6XVT4 RNA polymerase sigma-70 factor n=3 Tax=Pedobacte... 147 2e-34 UniRef50_C1DNR4 ECF sigma factor, FecI family n=14 Tax=Pseudomon... 147 2e-34 UniRef50_Q8EN30 RNA polymerase ECF-type sigma factor n=1 Tax=Oce... 146 3e-34 UniRef50_A6GRF7 Sigma factor, ECF subfamily protein n=1 Tax=Limn... 146 3e-34 UniRef50_Q4K5N5 RNA polymerase sigma-70 factor, ECF subfamily n=... 146 3e-34 UniRef50_Q1IAL3 Putative RNA polymerase sigma-70 factor n=1 Tax=... 146 3e-34 UniRef50_C6XYS8 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 145 4e-34 UniRef50_A3PQS7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 145 4e-34 UniRef50_B8KN82 Sigma-70, region 4 type 2 n=1 Tax=gamma proteoba... 145 5e-34 UniRef50_C6XY37 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 145 5e-34 UniRef50_A5FKM6 ECF subfamily RNA polymerase sigma-24 subunit n=... 145 5e-34 UniRef50_A5FID8 ECF subfamily RNA polymerase sigma-24 subunit n=... 145 6e-34 UniRef50_A7M626 RNA polymerase sigma factor n=5 Tax=Bacteroides ... 145 7e-34 UniRef50_UPI0001BC8451 putative RNA polymerase sigma factor n=1 ... 145 7e-34 UniRef50_C6XT34 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 144 9e-34 UniRef50_A3WYG2 RNA polymerase sigma-70 factor, ECF subfamily pr... 144 1e-33 UniRef50_D1VYX9 RNA polymerase sigma-70 factor n=1 Tax=Prevotell... 144 1e-33 UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacter... 143 1e-33 UniRef50_A6E6E9 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 143 2e-33 UniRef50_C6IQT2 RNA polymerase sigma factor n=3 Tax=Bacteroides ... 143 2e-33 UniRef50_A7LZK7 Putative uncharacterized protein n=5 Tax=Bactero... 143 2e-33 UniRef50_Q47F03 Sigma-70 region 2 n=1 Tax=Dechloromonas aromatic... 143 2e-33 UniRef50_C9KS81 RNA polymerase sigma factor n=1 Tax=Bacteroides ... 143 2e-33 UniRef50_A4VQR4 PpiC-type peptidyl-prolyl cis-trans isomerase n=... 143 2e-33 UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex de... 143 2e-33 UniRef50_C3QRM6 RNA polymerase ECF-type sigma factor n=10 Tax=Ba... 143 3e-33 UniRef50_B0NPF8 Putative uncharacterized protein n=4 Tax=Bactero... 143 3e-33 UniRef50_Q2S652 Possible sigma-70 factor, ECF subfamily, putativ... 143 3e-33 UniRef50_C5PUA0 RNA polymerase ECF family sigma factor n=1 Tax=S... 142 3e-33 UniRef50_C2FYM2 RNA polymerase ECF family sigma factor n=2 Tax=S... 142 4e-33 UniRef50_B3PGM9 PsbS n=2 Tax=Pseudomonadaceae RepID=B3PGM9_CELJU 142 4e-33 UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family prote... 142 5e-33 UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobact... 142 6e-33 UniRef50_C9L3N5 RNA polymerase ECF-type sigma factor n=2 Tax=Bac... 142 6e-33 UniRef50_Q2RW11 Sigma-24 (FecI) n=1 Tax=Rhodospirillum rubrum AT... 142 7e-33 UniRef50_Q82WW6 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 142 7e-33 UniRef50_B0T4N8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 142 7e-33 UniRef50_C6I4J3 RNA polymerase ECF-type sigma factor n=5 Tax=Bac... 141 7e-33 UniRef50_C2FS22 RNA polymerase sigma-70 factor, ECF subfamily pr... 141 7e-33 UniRef50_C3QVX7 RNA polymerase ECF-type sigma factor n=4 Tax=Bac... 141 8e-33 UniRef50_C6W0P8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 141 8e-33 UniRef50_A5W6B0 Anti-FecI sigma factor, FecR n=3 Tax=Pseudomonas... 141 9e-33 UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistip... 141 1e-32 UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=... 141 1e-32 UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma su... 141 1e-32 UniRef50_Q1IGG5 Putative RNA polymerase sigma-70 factor, ECF sub... 140 1e-32 UniRef50_D0TR41 RNA polymerase sigma-W factor n=4 Tax=Bacteroide... 140 1e-32 UniRef50_C6IHS3 RNA polymerase ECF-type sigma factor n=2 Tax=Bac... 140 1e-32 UniRef50_A6EEG5 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 140 1e-32 UniRef50_B0KF86 RNA polymerase, sigma-24 subunit, ECF subfamily ... 140 2e-32 UniRef50_D0THQ1 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 140 2e-32 UniRef50_C6XUM3 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 140 2e-32 UniRef50_C6XYK7 RNA polymerase sigma factor, sigma-70 family n=1... 140 2e-32 UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor... 140 2e-32 UniRef50_Q82WV0 Possible sigma-70 factor, ECF subfamily n=1 Tax=... 140 2e-32 UniRef50_Q82W77 Putative sigma-70 factor, ECF subfamily n=1 Tax=... 140 2e-32 UniRef50_Q2Y7Y7 Sigma-24 (FecI-like) n=1 Tax=Nitrosospira multif... 139 3e-32 UniRef50_A6EFD9 Putative RNA polymerase ECF-type sigma factor n=... 139 3e-32 UniRef50_Q82VA5 Sigma factor, ECF subfamily n=3 Tax=Proteobacter... 139 3e-32 UniRef50_B4RFZ0 RNA polymerase sigma-70 factor, ECF subfamily n=... 139 4e-32 UniRef50_A7LSQ3 Putative uncharacterized protein n=1 Tax=Bactero... 139 4e-32 UniRef50_Q1G4X3 BhoD n=1 Tax=Bordetella holmesii RepID=Q1G4X3_9BORD 139 4e-32 UniRef50_Q4KAM1 RNA polymerase sigma-70 family protein n=1 Tax=P... 139 4e-32 UniRef50_A1BAQ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 139 4e-32 UniRef50_C1DGX2 RNA polymerase sigma factor, ECF subfamily n=1 T... 138 5e-32 UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 138 5e-32 UniRef50_Q0AEC0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 138 6e-32 UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacte... 138 6e-32 UniRef50_Q2RRS3 Sigma-24 (FecI) n=3 Tax=Alphaproteobacteria RepI... 138 7e-32 UniRef50_B1ZTK0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 138 7e-32 UniRef50_C7PU34 RNA polymerase, sigma-24 subunit, ECF subfamily ... 138 7e-32 UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus S... 138 7e-32 UniRef50_A4ABA6 RNA polymerase sigma-70 factor, ECF subfamily pr... 138 8e-32 UniRef50_B4W7I6 RNA polymerase sigma factor, sigma-70 family n=1... 138 1e-31 UniRef50_B5JK98 RNA polymerase sigma factor, sigma-70 family n=1... 138 1e-31 UniRef50_B4WBG5 RNA polymerase sigma factor, sigma-70 family n=1... 137 1e-31 UniRef50_A6LGK0 RNA polymerase sigma factor n=3 Tax=Parabacteroi... 137 1e-31 UniRef50_C3K3P3 Putative ECF-sigma factor n=1 Tax=Pseudomonas fl... 137 1e-31 UniRef50_Q7M8T6 PUTATIVE RNA POLYMERASE SIGMA FACTOR n=1 Tax=Wol... 137 1e-31 UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 137 1e-31 UniRef50_C7PFD0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 137 2e-31 UniRef50_Q1I5S0 Putative RNA polymerase sigma-70 factor, ECF sub... 137 2e-31 UniRef50_B1ZXK0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 137 2e-31 UniRef50_C6ITD4 RNA polymerase ECF-type sigma factor n=7 Tax=Bac... 137 2e-31 UniRef50_Q8A5P0 RNA polymerase ECF-type sigma factor n=9 Tax=Bac... 137 2e-31 Sequences not found previously or not previously below threshold: UniRef50_A3HXR4 Putative RNA polymerase ECF-type sigma factor n=... 165 7e-40 UniRef50_C7PH14 RNA polymerase, sigma-24 subunit, ECF subfamily ... 155 5e-37 UniRef50_A1ZW95 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 153 2e-36 UniRef50_Q2S0C7 RNA polymerase ECF-type sigma factor, putative n... 148 6e-35 UniRef50_D2QFM1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 147 2e-34 UniRef50_C2BYK0 RNA polymerase sigma factor n=1 Tax=Listeria gra... 145 5e-34 UniRef50_C6Y2W3 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 143 2e-33 UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 143 2e-33 UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 143 2e-33 UniRef50_A5FAI1 ECF subfamily RNA polymerase sigma-24 subunit n=... 143 2e-33 UniRef50_C3QAU5 RNA polymerase ECF-type sigma factor n=4 Tax=Bac... 143 3e-33 UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrired... 142 4e-33 UniRef50_C9KS29 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 142 4e-33 UniRef50_C6VZZ8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 142 5e-33 UniRef50_C4KZA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 142 6e-33 UniRef50_C6XU89 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 142 6e-33 UniRef50_C2G4M9 RNA polymerase ECF family sigma factor n=2 Tax=S... 142 6e-33 UniRef50_A6E873 RNA polymerase sigma-70 factor, ECF subfamily pr... 142 7e-33 UniRef50_A7ALM4 Putative uncharacterized protein n=1 Tax=Parabac... 141 9e-33 UniRef50_A1ZZ70 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 141 1e-32 UniRef50_A6EIK6 RNA polymerase ECF-type sigma factor, putative n... 141 1e-32 UniRef50_C7PNP3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 140 1e-32 UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily ... 140 1e-32 UniRef50_C6Y0D6 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 140 2e-32 UniRef50_A7AI75 Putative uncharacterized protein n=2 Tax=Parabac... 140 2e-32 UniRef50_C6XVX9 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 140 2e-32 UniRef50_C8WQW1 RNA polymerase sigma factor n=2 Tax=Alicyclobaci... 140 2e-32 UniRef50_A9DTH0 Putative RNA polymerase sigma factor n=2 Tax=Fla... 140 3e-32 UniRef50_C7PPV6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 139 4e-32 UniRef50_A6LIX1 RNA polymerase ECF-type sigma factor n=8 Tax=Bac... 138 6e-32 UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacill... 138 7e-32 UniRef50_A6LGK6 RNA polymerase ECF-type sigma factor n=5 Tax=Bac... 138 8e-32 UniRef50_D2QQH7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 137 1e-31 UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizob... 137 1e-31 UniRef50_A6E7V9 RNA polymerase sigma factor (Possible RNA polyme... 137 2e-31 >UniRef50_P23484 Probable RNA polymerase sigma factor fecI n=27 Tax=Enterobacteriaceae RepID=FECI_ECOLI Length = 173 Score = 258 bits (661), Expect = 4e-68, Method: Composition-based stats. Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD Sbjct: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG Sbjct: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL Sbjct: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 >UniRef50_C4XCZ5 RNA polymerase sigma factor n=9 Tax=Enterobacteriaceae RepID=C4XCZ5_KLEPN Length = 173 Score = 245 bits (626), Expect = 5e-64, Method: Composition-based stats. Identities = 154/173 (89%), Positives = 161/173 (93%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MSD ATT ASLT ESLYG+HH WLKSWLTRKLQSAFDADDIAQDTFLRVM + TLSTIRD Sbjct: 1 MSDSATTIASLTLESLYGSHHDWLKSWLTRKLQSAFDADDIAQDTFLRVMGNNTLSTIRD 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PRSFLCTIAKRVMVDLFRRN+LEKAYLEMLALMPE APSPEE ESQLETLQL+D MLDG Sbjct: 61 PRSFLCTIAKRVMVDLFRRNSLEKAYLEMLALMPERLAPSPEEHESQLETLQLIDRMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L GKTREAFLLSQLDGLTYSEIA KLGVS+SSVKKYVAKA+EHCLLFRLE+GL Sbjct: 121 LKGKTREAFLLSQLDGLTYSEIALKLGVSVSSVKKYVAKAIEHCLLFRLEHGL 173 >UniRef50_Q1GXU3 Sigma-24 (FecI-like) n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXU3_METFK Length = 179 Score = 198 bits (505), Expect = 6e-50, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKRV 72 E LY H GWL +WL KL + A D+ QDTF+RVM + + ++ + PR++L +IA+ + Sbjct: 22 EQLYSHHRGWLHNWLRGKLGCSEQAADLVQDTFIRVMAARSNIANLDQPRAYLSSIARNL 81 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 ++D +RR LE+AYL ++L+PE PSPE+ E L+ +D +L L TR+ FLLS Sbjct: 82 VIDHWRRKELEQAYLAAISLLPEQEVPSPEQSLLVFEALEQVDKVLQSLPPATRQVFLLS 141 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 QLDG+TY+ IA +L S+ ++K+++ KA C+ L Sbjct: 142 QLDGMTYAAIAEQLDCSVPTIKRHMHKAFFACMQVEL 178 >UniRef50_A9BWH7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Proteobacteria RepID=A9BWH7_DELAS Length = 182 Score = 196 bits (499), Expect = 3e-49, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRS 63 A++ + + SLY HH WL+S L ++L + DA D+AQDTF+R++ S IR+PR Sbjct: 17 ASSAPAFSVHSLYQNHHPWLESLLRKRLGNRDDAADLAQDTFVRLLRSPLPQQDIREPRR 76 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L TIA+ ++ DLFRR LE++YL+ LA +P+ APSPEE+ +TL +D ML GL Sbjct: 77 YLATIARGLVADLFRRRTLEQSYLDYLAQLPQSLAPSPEEQAIVQQTLLDVDRMLQGLPP 136 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 K REAF+L+Q + L+Y EIA +LGVS+ +V Y+ +A+EHC L Sbjct: 137 KVREAFVLAQFEELSYPEIAQRLGVSLRTVSNYLTRAMEHCCL 179 >UniRef50_Q4KKE1 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas RepID=Q4KKE1_PSEF5 Length = 179 Score = 192 bits (489), Expect = 4e-48, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 109/163 (66%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 +ATT + LY HHGWL+ WL ++L A D+AQDTFLR+++S ++ RS Sbjct: 12 QATTDGNAQLHRLYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESRS 71 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L IA+ ++VD +RR +E+AYLE +A +PE PS E R LETL +D+MLD + Sbjct: 72 YLAQIARNLVVDQWRRARIERAYLESIAHLPEPQTPSLESRALILETLMQIDAMLDRMPD 131 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 K R+AF++SQ +GL Y++IA +L VS+SSV+KY+ +A++ C Sbjct: 132 KVRQAFVMSQFEGLGYAQIAERLEVSVSSVQKYMTRAIQACYQ 174 >UniRef50_Q48ML0 RNA polymerase sigma-70 family protein n=19 Tax=Proteobacteria RepID=Q48ML0_PSE14 Length = 198 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 77/161 (47%), Positives = 108/161 (67%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A + + T ESLY H+ WL +WL R+L A D+AQDTF++V+ + I +PR+F Sbjct: 35 AHSALNHTVESLYRAHNTWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTQQIVEPRAF 94 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIAKRV+ + +RR LE AY + LA +PE APS EER LETL LD +LDGL Sbjct: 95 LTTIAKRVLCNHYRRQDLEHAYYQALAELPECVAPSEEERAIILETLVELDQLLDGLPVL 154 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + AFL+SQ+DGL++ +IA +LG+SI++VK+++ KA C Sbjct: 155 VKRAFLMSQVDGLSHGQIAAELGISIATVKRHLNKAALRCY 195 >UniRef50_Q39ER9 Sigma-24 (FecI-like) n=6 Tax=Proteobacteria RepID=Q39ER9_BURS3 Length = 172 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 102/154 (66%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 F +LY HHGWL+ WL +KL +A DA D+A DT+LRV+ S T D R +L IA + Sbjct: 12 FRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDSRRYLTQIANGL 71 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 ++DL+RR +E AYL+ + +PE APSPE R +E L +D+MLD L R A LL Sbjct: 72 VIDLYRRRHIESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRLPANARTALLLC 131 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 +LDGLTY EIA +LGVS+SSV+KYVA A+ C Sbjct: 132 KLDGLTYREIAAQLGVSVSSVEKYVASALRACYA 165 >UniRef50_A6T3U0 RNA polymerase sigma-70 factor, ECF subfamily n=10 Tax=Proteobacteria RepID=A6T3U0_JANMA Length = 184 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 116/160 (72%), Gaps = 3/160 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS---ETLSTIRDPRSFLCTIA 69 +LY HHGWL WL +KL A +A DIAQDTFLR++ + + +R+PR++L T+A Sbjct: 25 IHTLYSNHHGWLFGWLRKKLGCAHNAADIAQDTFLRILTAQDKRSDLDLREPRAYLTTVA 84 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 RV+++ +RR +LE+AYLE LAL+P+ AP+PE+R LETL +D+MLD L K R AF Sbjct: 85 GRVLLNHYRRLSLERAYLEALALVPDMYAPAPEDRLIILETLHEIDAMLDALPHKARTAF 144 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 LL+Q +GL+Y+EI+ +L VS+ +VK+Y+A+A E C++ L Sbjct: 145 LLAQFEGLSYAEISVRLDVSVRTVKRYMAQAFEECIMLDL 184 >UniRef50_Q6FBE7 Alternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FBE7_ACIAD Length = 161 Score = 184 bits (469), Expect = 9e-46, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 105/155 (67%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY HH W+ +WL R+L ++ DA D+AQDTF+RV+ ++L I PR++L T+AK +M++ Sbjct: 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 F R +E+AYLE+LA PE PSPE+R +ETL + +LD L + R+ FL +QL+ Sbjct: 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + Y +IA + +S+S+VK+++ KA HCL L+ Sbjct: 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156 >UniRef50_Q2L2C6 RNA polymerase ECF-family sigma factor (Fragment) n=4 Tax=Bordetella RepID=Q2L2C6_BORA1 Length = 169 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 105/157 (66%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 A+ + + LY H WL WL RKL + A+D+AQD F+R++ + R+FL TI Sbjct: 8 ANASVDGLYRQHRSWLMGWLRRKLGGSDHAEDMAQDVFIRIIQGRKQVDVVQARAFLTTI 67 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+ +++D +RR ALE AY + LA +P+ P PE R +++L +LD ML GL+ + REA Sbjct: 68 ARGMLIDHWRRAALEAAYRDYLASLPQVSEPGPEARIEVMQSLAVLDRMLAGLSPRAREA 127 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 F+LSQ+DGLTY EIA +LGVS+SSV++Y+ KA+ C Sbjct: 128 FMLSQIDGLTYPEIAVRLGVSVSSVQQYMVKAMSACY 164 >UniRef50_A6SZM0 RNA polymerase sigma-70 factor, ECF subfamily n=4 Tax=Proteobacteria RepID=A6SZM0_JANMA Length = 186 Score = 183 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 2/168 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 M +SLY H+GWL WL +KL A D AQDTF R++ L+T++ Sbjct: 10 MPPATHHNQHDALDSLYSEHYGWLYGWLRKKLACPHSAADFAQDTFFRLLSVPFELTTLQ 69 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSML 118 PR++L T A R+M+D RR +E+AYLE LAL+ E + SPE+ +ETL L+ ML Sbjct: 70 TPRAYLTTTATRLMIDETRRRKVEQAYLEALALLQDEVYSVSPEQHLETVETLTLIARML 129 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + L K R+AF+LS+LD L+Y EIA +LGVS S VK+Y+A+A+ HC Sbjct: 130 EDLPEKPRQAFMLSRLDNLSYPEIAMRLGVSASMVKQYIARAMVHCYQ 177 >UniRef50_A6SVZ7 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SVZ7_JANMA Length = 178 Score = 182 bits (463), Expect = 4e-45, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 105/160 (65%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T ++S + LY HHGWLK+WL +K +A D+A DT++RV+ + I PR+FL Sbjct: 13 TASSSDSLTRLYSDHHGWLKAWLRKKTGCPHNAADLAHDTYMRVIETRNAVEIDTPRAFL 72 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 TIAKRV+ FR +E+AYL+ +A +PE PS E + +ETL +D +LDGL K Sbjct: 73 TTIAKRVLASYFRHLEVERAYLDSIADLPEPLVPSLETQAIVIETLLEIDRILDGLPAKV 132 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 R AFL +Q+DG+ Y+EIA +L VS+SSVK+Y+A+A+ Sbjct: 133 RTAFLWAQIDGMPYAEIAERLDVSLSSVKQYMARAIRQIY 172 >UniRef50_B0KIQ2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KIQ2_PSEPG Length = 176 Score = 182 bits (462), Expect = 6e-45, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 112/175 (64%), Gaps = 8/175 (4%) Query: 7 TTASLTFE----SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET----LSTI 58 +T + F LY WL +WL ++ + A D+ QD F+RVM + L + Sbjct: 2 STPDVAFTSQVSQLYRAQSKWLHNWLKPRVNCSHLAADLVQDVFVRVMSAADAAVKLEAV 61 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 R+P+ +L TIA+R+M+D RR LE+A+L++LA PE SPE+R + L+TL LD+ML Sbjct: 62 REPKGYLATIARRLMIDHLRRVHLERAWLQVLAEQPEALDISPEQRLALLQTLFELDAML 121 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L K REAFLLSQ+DG+ Y +IA +LG+S SV++YVAKA EHC+++ L GL Sbjct: 122 ASLGPKVREAFLLSQIDGMPYKQIAAQLGISEVSVRRYVAKAAEHCMIYSLGLGL 176 >UniRef50_B3PJT4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJT4_CELJU Length = 172 Score = 181 bits (461), Expect = 7e-45, Method: Composition-based stats. Identities = 76/166 (45%), Positives = 110/166 (66%), Gaps = 2/166 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS--TI 58 MS + ++ ESLY HH WLK WL R+L +D+A DTF+R++ S L+ I Sbjct: 1 MSAMPSQSSHSFTESLYSDHHHWLKRWLRRRLDCPVQVEDLAHDTFVRILKSHQLAAAPI 60 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 R+PRS+L TIA +++D FRR +E+AYLE LA + + PSPEE+ L+ L +D++L Sbjct: 61 REPRSYLSTIAGALLIDFFRRRTVERAYLEALAGLAQDEWPSPEEQAEILDVLIRIDALL 120 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 DGL + R+ FL+SQLDG+TY++IA +L VS+ +VK +A A HC Sbjct: 121 DGLKPRVRKVFLMSQLDGMTYADIAARLDVSLRTVKSDMATAFGHC 166 >UniRef50_A6T181 RNA polymerase sigma-70 factor, ECF subfamily n=69 Tax=Proteobacteria RepID=A6T181_JANMA Length = 181 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 80/165 (48%), Positives = 110/165 (66%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A + LY HHGWL +WL ++L ++FDA D+A DTFLRV+ + IR+PR+ Sbjct: 16 ADSVQQQQVHLLYTEHHGWLHAWLRKRLGNSFDAADLAHDTFLRVLTKDVPLAIREPRAL 75 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA+ ++ +L+RR +E+AYL+ LA++PE A SPE R LETL +D +LDGL Sbjct: 76 LTTIAQGMVANLYRRRQIEQAYLDALAVLPESHAISPEARAIMLETLVEIDRLLDGLAPL 135 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 R+ FLLSQLDGL +EIA +L +SI +VK+Y+AKAV C L Sbjct: 136 VRKVFLLSQLDGLGQAEIAERLAISIPTVKRYIAKAVAQCCFTEL 180 >UniRef50_C3K1F8 Putative iron-related RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K1F8_PSEFS Length = 172 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 105/160 (65%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 ++ + +++Y HH WL WL KL +A DA D+A DTF+R++ + I +PR +L Sbjct: 8 SSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQIVEPRDYLA 67 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 TIA+ +++D +RR+A+E+AY + LA PE A S E++ LETL +D L L + R Sbjct: 68 TIARGLVIDRYRRHAIEQAYKQTLAERPEANAISEEDKAIILETLVAVDKALSALGERAR 127 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 F+LSQ++GLTY +IA +L VS+++VKK++ +A+ C L Sbjct: 128 RIFMLSQIEGLTYQQIADQLQVSLTTVKKHMIRALTECSL 167 >UniRef50_C6DJA9 RNA polymerase sigma factor n=6 Tax=Enterobacteriaceae RepID=C6DJA9_PECCP Length = 170 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 78/164 (47%), Positives = 108/164 (65%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 M +AT + + + LY HH WL +WL KL A A+D+AQDTFL V+++ L TIR Sbjct: 1 MVRKATASVNDFAQQLYFDHHRWLYNWLRHKLDCAQHAEDLAQDTFLSVLMNPELLTIRQ 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR FL T+A+R++ + +RR +E AYL++L+ P+ PSPE R LE L+ LD+ LDG Sbjct: 61 PRPFLATVARRLVANHYRRKKIEDAYLDVLSSQPDACMPSPETRLLTLEILEQLDAALDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L REAFLL+ L G+ YS+IA +L VS SSVK+Y+ +A C Sbjct: 121 LPAPVREAFLLAHLHGMRYSDIAERLRVSSSSVKQYLQRANLQC 164 >UniRef50_Q82VL0 Probable sigma-70 factor, ECF subfamily n=2 Tax=Proteobacteria RepID=Q82VL0_NITEU Length = 178 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 77/165 (46%), Positives = 106/165 (64%), Gaps = 2/165 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI--RDPR 62 AT A+ LY HHGWL WL KL +A DA D+A DTFLRVM S+ + +PR Sbjct: 13 ATDLAAHRIHVLYTDHHGWLYGWLRCKLGNACDAADLAHDTFLRVMASQRMPVHLGEEPR 72 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 + L IAK +++D +RR +E+AYLE LA +PE PSPE R LE L +++ML GL Sbjct: 73 ALLTHIAKGLVIDHWRRQDVERAYLEALAHLPETEIPSPETRLLILEALCRIETMLRGLP 132 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +TR+ FLL+QLDGLTY +IA + G S+ ++K+++ A CL+ Sbjct: 133 VRTRDIFLLAQLDGLTYRQIADQTGFSLITIKRHMRTAFVACLML 177 >UniRef50_A6SXC6 RNA polymerase sigma-70 factor, ECF subfamily n=8 Tax=Proteobacteria RepID=A6SXC6_JANMA Length = 190 Score = 179 bits (455), Expect = 3e-44, Method: Composition-based stats. Identities = 74/154 (48%), Positives = 100/154 (64%), Gaps = 1/154 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRV 72 +LY HHGWL WL +KL AF A+D+A DTFLR++V L + DPR++L IA+ + Sbjct: 27 HTLYSNHHGWLHGWLRKKLGCAFQAEDLAHDTFLRLIVRPRQLDSAYDPRAYLTKIAQGL 86 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +VDL+RR +E+A+L LA PE PS E + +ETL +D +L L K R A LL+ Sbjct: 87 VVDLWRRQEIERAWLATLAAHPESVVPSAEHQAIIIETLIEVDRLLAQLPEKPRRALLLA 146 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L +TY+EIA L VS VKKY+A+A+ HCLL Sbjct: 147 HLHDMTYAEIAQVLDVSERMVKKYMAQAMLHCLL 180 >UniRef50_A6SX54 Uncharacterized conserved protein n=3 Tax=Proteobacteria RepID=A6SX54_JANMA Length = 169 Score = 178 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 108/161 (67%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 + + S +LY HHGWL L RKL + +ADD+AQDTF R++ + + IR+PR++ Sbjct: 2 SVASHSDAVANLYSHHHGWLVGLLRRKLGNVDNADDLAQDTFTRLLTARSEELIREPRAY 61 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA R+ FRR ALE+AYL+ LA MPE PSPE R +E L + +LDGL+ + Sbjct: 62 LTTIASRLTAQYFRRLALERAYLDALAGMPEETVPSPETRMLVVEALTEISRVLDGLSPR 121 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 RE FLL+QLDGLTY+EIA + +S+++V+K + +A +HC Sbjct: 122 VREIFLLAQLDGLTYAEIATQFDMSVNAVQKSMIRAFQHCY 162 >UniRef50_B3PJT7 Probable fecI Specialized sigma subunits of RNA n=2 Tax=Proteobacteria RepID=B3PJT7_CELJU Length = 170 Score = 178 bits (453), Expect = 7e-44, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 99/159 (62%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 T LY HHGWL +WL R++ + +A D+AQDT++R++ S + R +L Sbjct: 3 THPDTGLTRLYSDHHGWLYAWLRRRMGCSHNAADLAQDTYVRLLNSGRFPSQDQARPYLL 62 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 IAK +++D RR +E+AYL+ LA PE APSPEE +E L +DS L L R Sbjct: 63 QIAKGLVIDRHRRRLIEQAYLDALASQPETLAPSPEETALVVEVLVRIDSALARLKPVVR 122 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 E FLLS+ +GLTY EIA +L +++++V+KY+ A++ C+ Sbjct: 123 ETFLLSRFEGLTYREIALRLDIAVATVRKYMLMAIQSCM 161 >UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma subunit n=5 Tax=Acinetobacter RepID=B2HV64_ACIBC Length = 178 Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 3/173 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 MS A SL + LY +H WL WL +KL + A D+ QDTF++++ + L I+ Sbjct: 1 MSPIAVNKTSLLVDQLYRSHQSWLHQWLRQKLGNTDQAADLVQDTFIKLLQTRDELFGIK 60 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSM 117 +PR++L +IAK +++D RR +E+AYL+ L+ M SPE++ ++ + L Sbjct: 61 EPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQMEYMLDAVASPEDQMQIIQAINQLCKA 120 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L+G+ K ++AF+L L+G T+ EIA +L VS ++KY+A + C R + Sbjct: 121 LEGVCEKAQQAFILHYLEGYTHKEIAERLNVSTKMIQKYLASCLIQCYQNRQD 173 >UniRef50_Q88Q31 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas putida KT2440 RepID=Q88Q31_PSEPK Length = 178 Score = 178 bits (452), Expect = 9e-44, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 1/167 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRS 63 + E LY +HHGW++ WL RKL +A DA ++AQD F+R++ + R+ Sbjct: 6 SAPAPGFDLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHARA 65 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L +++ VD +RR +E+AYLE+LA PE APS E + LETL+ L +M + + Sbjct: 66 YLGRMSRNACVDFWRRRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQ 125 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + EAF ++QL G+ EIA +LGVS SV Y+A+A+ CLL E Sbjct: 126 RVAEAFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQCLLLEAE 172 >UniRef50_Q88IB3 RNA polymerase sigma-70 factor, putative n=2 Tax=Pseudomonas RepID=Q88IB3_PSEPK Length = 168 Score = 177 bits (451), Expect = 9e-44, Method: Composition-based stats. Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 1/162 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD-PRS 63 A + +L ++LY HHGWL+ WL RKL +A DA D+A DTF+R++ + + PR+ Sbjct: 4 AEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRA 63 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 L IAK ++VD +RR +E+AYLE +A +P+ PSPE R LETL +D+ML + Sbjct: 64 LLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPA 123 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + R+ FLLSQLDGLTY++IA +L VS+ ++K+ + A CL Sbjct: 124 RVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACL 165 >UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNT9_9GAMM Length = 189 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCT 67 + + LY H GWL WL +K+ S+ A D+ QDTF++++ + L +++P+++L + Sbjct: 20 NPILVDELYRNHSGWLHHWLRKKIGSSEQAADLVQDTFIKILQTRDELLGVKEPKAYLTS 79 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKT 125 IAK +++D RR +E+AYL+ L+ M SPEE+ ++ + L L+ ++ K Sbjct: 80 IAKNLLIDQVRRKRIEQAYLDGLSEMEYMLDAVISPEEQVQIIQAIHQLCKALEAVSEKA 139 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 ++AF+L L+G T+ E A KLGVS ++KY+A + C R++ Sbjct: 140 QQAFILHYLEGYTHKETAEKLGVSTKMIQKYLASCLVQCYQTRMD 184 >UniRef50_A6W1Y2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1Y2_MARMS Length = 172 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 1/160 (0%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKRVM 73 LY H WL W+ +L A DIAQDTF+R++ S + + R+FL TIAK + Sbjct: 13 ELYAEHSSWLTGWIRSRLGCHELAADIAQDTFVRLLKRPKYFSNMGEARAFLSTIAKGLY 72 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 +D +RR +E+A+LE LA E PS E S +E L LD+M+ L K +LSQ Sbjct: 73 IDHWRRKQVEQAWLESLAHCDEEFVPSAEHSASMIELLCELDAMIAKLPKKVANTLILSQ 132 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L GLTY EIA +L VS VK+Y+A+A+ CLLF+ + L Sbjct: 133 LHGLTYREIAERLSVSERMVKRYMAQAMLQCLLFKSDRSL 172 >UniRef50_C1DDL3 Sigma factor, FecI family n=3 Tax=Proteobacteria RepID=C1DDL3_AZOVD Length = 170 Score = 176 bits (447), Expect = 3e-43, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 110/167 (65%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T+ + +LY +H WL+ WL+R+LQ DA D+ QDTFLR + S L I++PR+FL Sbjct: 4 TSDPNALLATLYRENHRWLRGWLSRRLQCPQDAADLTQDTFLRALNSRQLEQIQEPRAFL 63 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 T+AKR++ +L+RR LE++YL+ LA +PE APS E+ E ++ +D +LDGL + Sbjct: 64 GTLAKRLLCNLWRRRQLERSYLDALAQLPERFAPSEEDIALVREAIEAIDRLLDGLPLRA 123 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 R AFLL++LDGL IA +LGVS+++V++ + +A HCL E Sbjct: 124 RRAFLLNRLDGLGQQAIAERLGVSLATVERDLRRAYIHCLTRDPEQP 170 >UniRef50_A9BUB1 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Proteobacteria RepID=A9BUB1_DELAS Length = 187 Score = 175 bits (446), Expect = 4e-43, Method: Composition-based stats. Identities = 80/163 (49%), Positives = 109/163 (66%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 + +LY HHGWL+ WL RKL + F+A DIA DTF+ V+ S I PR FL Sbjct: 24 RAPADPVHTLYVEHHGWLQGWLRRKLGNVFEASDIAHDTFVNVITSGMAGRIEQPRPFLA 83 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 T+A+ +++ RR LE+AYL+ LAL+P APSPEER LE+LQ +D LD L K R Sbjct: 84 TVARHLVIRQHRRRLLERAYLDTLALLPAELAPSPEERLIALESLQAVDQALDALAPKVR 143 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 EAFLL+ L+GL+Y++IA +LGVS++SVK+Y+A+ E C + L Sbjct: 144 EAFLLAHLEGLSYADIATRLGVSMTSVKRYLAQGYERCFVLAL 186 >UniRef50_C3JY07 Putative RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3JY07_PSEFS Length = 180 Score = 175 bits (446), Expect = 4e-43, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 T ++Y HHGWL WL +KL + A D+A D F+RV++ I++PR+FL T A R Sbjct: 16 TLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQNIKEPRAFLATTAGR 75 Query: 72 VMVDLFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 +++D RR +EKAYLE L + + G P P L+ L+ + ML GL REAFL Sbjct: 76 LLIDGARRRRIEKAYLEALVIQCADAGMPDPAAIHVALQALERIAEMLAGLPANAREAFL 135 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 LS+LDGLTYSEIA +L VS S+VK Y++ A+ HC Sbjct: 136 LSRLDGLTYSEIATRLDVSSSTVKNYISSALVHCY 170 >UniRef50_D0J502 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Comamonas testosteroni RepID=D0J502_COMTE Length = 174 Score = 175 bits (445), Expect = 5e-43, Method: Composition-based stats. Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 3/173 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM---VSETLST 57 M A + AS S+Y H+ WL SWL RKL + DA DIAQDTF R+ ++ + Sbjct: 1 MPTHANSIASEALGSMYTLHNRWLISWLQRKLGNRCDAADIAQDTFTRIWTTARTQAIED 60 Query: 58 IRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSM 117 IR+PR++L +A+R+M++ R +LE+AYL L L+PE A S E R LETL+ LD++ Sbjct: 61 IREPRAYLTIVARRLMINHLERRSLEQAYLASLHLLPEATALSAEARAILLETLEELDAL 120 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L L K R AFLLSQL+GL Y EIA ++ VS+ +V +Y+A+ CL L+ Sbjct: 121 LGELPTKVRTAFLLSQLEGLAYEEIATQMQVSVRTVTRYMAQGFRQCLRVMLD 173 >UniRef50_A6SZL5 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Proteobacteria RepID=A6SZL5_JANMA Length = 178 Score = 175 bits (444), Expect = 6e-43, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 106/160 (66%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCT 67 +S E LY H WL + L R+L S DA+D+ +TF +V+ ++ + I++PR+FL T Sbjct: 17 PSSSVIEKLYAEHQSWLLARLQRRLPSRADAEDVTSETFAQVVENKNPADIQEPRAFLTT 76 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 IAKRV+ L+RR LEKAYL+ L LMPE SPEER +E ++ +D LD L + Sbjct: 77 IAKRVLFHLWRRQDLEKAYLQSLMLMPEASVLSPEERAVLIEAIEQIDRALDSLPLPVKT 136 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 AFL S+LD LTY EIA +LGVS++++++Y+ +A+ CL + Sbjct: 137 AFLYSRLDRLTYPEIALRLGVSVATIERYMKRALLQCLQW 176 >UniRef50_C1DFE8 ECF sigma factor, FecI family n=5 Tax=Gammaproteobacteria RepID=C1DFE8_AZOVD Length = 175 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 87/176 (49%), Positives = 114/176 (64%), Gaps = 4/176 (2%) Query: 1 MSDR---ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST 57 MSD A LY HH WL WL R++ + A D+AQDTF+R++ +L Sbjct: 1 MSDAIRDAAEPPHRAVGLLYQNHHTWLVGWLRRRMDCSHSAADLAQDTFVRLIG-GSLPE 59 Query: 58 IRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSM 117 +R+PR +L T+AKRV++D FRR LE+ YL+ LA PE SPE R +ETL LD+M Sbjct: 60 LREPRHYLVTVAKRVLIDHFRRRTLERTYLDALARQPEAEEVSPEVRLQIVETLLALDAM 119 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L GL K R+AFL+SQL G+ Y+EIA +LGVS+SSV KY+A+A E CLLF L+ L Sbjct: 120 LLGLGHKPRQAFLMSQLLGMNYAEIAERLGVSVSSVTKYIARATEQCLLFALDADL 175 >UniRef50_A4XVR2 RNA polymerase, sigma-24 subunit, ECF subfamily n=25 Tax=Pseudomonadaceae RepID=A4XVR2_PSEMY Length = 174 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 102/151 (67%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H WL WL + L A+D++QDTF+R++ L + R+PR+ L TIA+ +++D Sbjct: 17 LYRDHRDWLFGWLRKSLNCTQRAEDLSQDTFVRLLGRPDLHSPREPRALLTTIARGLLID 76 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 FRR+ALE+AYLE LAL PE PSPEE+ LE L +D +L L+ K R AFL ++LD Sbjct: 77 QFRRSALERAYLEELALAPEALQPSPEEQALALEQLSEIDRLLGHLSSKARAAFLYNRLD 136 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 GL ++EIA +LGVS S V++Y+A+ + C + Sbjct: 137 GLGHAEIAERLGVSPSRVRQYLAQGLRQCYI 167 >UniRef50_C6DKM4 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Proteobacteria RepID=C6DKM4_PECCP Length = 180 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 1/169 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPR 62 A S LY HHGWL+ L ++L + DA D+AQD F+R+++ + R Sbjct: 3 SANIDTSADMHQLYCQHHGWLQGLLRKRLGNLCDAADLAQDVFVRLLLKPRQFDSHAGAR 62 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 ++L +A+ + VDL+R+ +E+ +L LA PE A S E+ LETL +D+ML L Sbjct: 63 AYLSVMAQGMCVDLWRKREIERVWLASLAEQPEPVALSAEDSNIILETLYQVDAMLRALP 122 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 K R AF+++Q+ G Y +IA LGVS VKKY+A+A+ HC+L E Sbjct: 123 EKVRAAFIMAQVQGRPYRDIAEALGVSERMVKKYMAQAMLHCVLLEAEI 171 >UniRef50_B4SLV1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Stenotrophomonas RepID=B4SLV1_STRM5 Length = 174 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 99/168 (58%), Gaps = 1/168 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 M +S Y HHGWL WL R+ +A A D+ QDTF+R++ S +R Sbjct: 1 MPMAVPAASSTALAGFYREHHGWLLGWLRRRTHNADCAADLTQDTFVRLLGRRVDPSELR 60 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 PR++L TIA ++V+ ++R LE+AYL LA PE PS EER L+ L + ML Sbjct: 61 LPRAYLSTIAHALLVNHWQRADLERAYLTALAAQPEPVHPSAEERTQALQLLHAIADMLS 120 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 GL + R AFL+++L GL Y+EI +LGVS VKKY+A+A+ HCL Sbjct: 121 GLAERPRRAFLMARLSGLGYAEIGQQLGVSERMVKKYMAQAMLHCLRL 168 >UniRef50_B0KPG3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Pseudomonadaceae RepID=B0KPG3_PSEPG Length = 168 Score = 172 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 72/164 (43%), Positives = 111/164 (67%), Gaps = 4/164 (2%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS----TIRDPRSFLCT 67 +Y H+GWLK WL R+L + A D+AQDTFLR++ ++ + +++ PR++L T Sbjct: 5 DLSQVYVEHNGWLKQWLYRRLGCSAQAADLAQDTFLRILQAQQKAGAKLSLQRPRAYLAT 64 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +++R++ D FRR +LE+AYLEML +PE A S EE+ S ETLQ LD++LD R Sbjct: 65 VSRRLVYDHFRRQSLERAYLEMLEQLPELFALSAEEQWSMRETLQQLDALLDTFKPVVRS 124 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 FLL QL+GLTY E+A +LG+ +VK+++A A++ C+LF ++ Sbjct: 125 VFLLVQLEGLTYIEVARRLGIGERTVKRHMANALQACILFEEDF 168 >UniRef50_B9P6N4 Predicted protein n=8 Tax=cellular organisms RepID=B9P6N4_POPTR Length = 188 Score = 171 bits (434), Expect = 9e-42, Method: Composition-based stats. Identities = 74/155 (47%), Positives = 115/155 (74%), Gaps = 2/155 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE--TLSTIRDPRSFLCTIAKRV 72 +LY HHGWL+ WL R+L +A DA D+AQDTF+R++ + L +R+PR++L T+A+R+ Sbjct: 32 ALYVGHHGWLQGWLRRRLGNACDAADLAQDTFIRLLTAPAGDLPALREPRAYLATVARRL 91 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +++ RR +LE+A+L+ LA +P APSPE++ L+ LQ +D+MLDGL K R F+LS Sbjct: 92 LINHLRRQSLEQAWLQALAALPAPQAPSPEQQLLILQALQEVDAMLDGLPPKVRAVFILS 151 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 Q++GLTY+ IA +LG+ + SVK+Y+A+A+ C+L Sbjct: 152 QVEGLTYAAIAEQLGMGLRSVKRYMAQAMAECILL 186 >UniRef50_B1JF11 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida W619 RepID=B1JF11_PSEPW Length = 171 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 70/153 (45%), Positives = 105/153 (68%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY +HH WL+ WL ++ A D+AQDTF+R++ + +S I++PR++L +IA+ +M+D Sbjct: 15 LYQSHHAWLRGWLRSRVGCQEHAADLAQDTFVRLLRARQVSPIKEPRAYLSSIARGLMID 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 FRR ALE+AY E LA +P G PS E R L+ L+ LD L L + R+AFLL+QLD Sbjct: 75 QFRRRALERAYQESLAHVPAGEVPSEEHRLVILDALERLDRALHQLRPRARQAFLLAQLD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 GL+ ++IA +LGVS ++V++ +AKA+ C R Sbjct: 135 GLSIAQIALRLGVSRATVERDLAKALGVCYRLR 167 >UniRef50_C6CDZ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDZ4_DICDC Length = 179 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 1/166 (0%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFL 65 T + + LY HHGWL+ L ++L + DA D+A D F++++ + R++L Sbjct: 6 TASPSDLQQLYQQHHGWLQGLLCKRLGNLCDAADLAHDIFVQLLTRPRHFDSHEGARAYL 65 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 +A+ + VDL+RR +LE+A+ + L + A S E+ LETL +D+ML L Sbjct: 66 SVMAQGLCVDLWRRRSLEQAWRQSLNDCEQVHALSAEQHTIILETLYQVDAMLRQLPDNV 125 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R AF+LSQ+ G TY++IA LGVS VKKY+A+A+ HC+L E+ Sbjct: 126 RVAFILSQIQGQTYAQIAITLGVSERMVKKYMAQAMLHCILLEAEH 171 >UniRef50_B0KJM4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KJM4_PSEPG Length = 170 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 E+LY H GWL + L R+L +A DA D+ QDTF R++ S+T+ +PR++L +A ++ Sbjct: 16 EALYNGHQGWLHARLRRRLGNAVDAADLVQDTFARILASKTV-VFDEPRAYLSCVAGGIL 74 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 + +R +LE+AYL+ L +PE PSPE R LETL +D+MLD L R AFLLSQ Sbjct: 75 ANWCQRKSLERAYLKALEHLPEPEVPSPEARLLILETLHEIDAMLDTLPPLVRRAFLLSQ 134 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L G+ Y+ IA +LGVS+ ++K+Y+ +A CL Sbjct: 135 LGGMKYAAIAEQLGVSLITIKRYMKQAFLQCLRL 168 >UniRef50_B7UW20 Probable sigma-70 factor, ECF subfamily n=12 Tax=Bacteria RepID=B7UW20_PSEA8 Length = 175 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 6/161 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y HG L +L + L S+ DA D+AQDTF + + ++ PR+FL IA+ ++ D Sbjct: 13 YQAFHGELLRFLRKHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPE-----ERESQLETLQLLDSMLDGLNGKTREAFLL 131 +RR L+ A E A E ER Q + L L + L L + REAF+L Sbjct: 73 WRRQQSRGQDLDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVL 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + DGL+ E+A ++G+S+S V+K++A A+ HC RL G Sbjct: 133 HKFDGLSQVEVAERMGISLSMVEKHIASALLHC-KRRLGQG 172 >UniRef50_A5W6M8 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Pseudomonadaceae RepID=A5W6M8_PSEP1 Length = 166 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 77/161 (47%), Positives = 101/161 (62%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T LY ++ WLK WL +L +A DA D+A DTFLRVM + IR+PRS+L Sbjct: 2 ATLDPQALHQLYSENNSWLKGWLRARLGNAADASDLAHDTFLRVMTARNPLPIREPRSYL 61 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 IA+ +++D RR +EKAYL+ LAL PE SPE R S +E L +DS+LD L KT Sbjct: 62 SAIARALLIDKARRRIIEKAYLQALALRPEPVEVSPEVRLSIIEMLVAVDSLLDELGAKT 121 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 R FL QL+GLTY A + GVSI++VK ++ KA+ CLL Sbjct: 122 RAIFLAVQLEGLTYGAAAERFGVSITTVKNHLIKAMTRCLL 162 >UniRef50_D0J6Z4 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=cellular organisms RepID=D0J6Z4_COMTE Length = 146 Score = 168 bits (428), Expect = 4e-41, Method: Composition-based stats. Identities = 72/144 (50%), Positives = 98/144 (68%) Query: 24 LKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALE 83 ++ WL RK+ +AFDA D+ QDTF+R++ + PR++L T+AK V+V+ RR ALE Sbjct: 1 MQGWLRRKVGNAFDAADLTQDTFVRILGVREPPRLESPRAYLTTVAKGVLVNWCRRQALE 60 Query: 84 KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIA 143 +AYLE LAL+PE APSPE R LE L +D+MLD L R FLLSQL+ + Y +IA Sbjct: 61 RAYLEALALLPEPEAPSPEHRALVLEALHEIDAMLDALPPLVRRTFLLSQLEDMKYDDIA 120 Query: 144 HKLGVSISSVKKYVAKAVEHCLLF 167 +LGVS++SVK+Y+A A CL Sbjct: 121 SQLGVSLTSVKRYMALAFRQCLAL 144 >UniRef50_C6XBX6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBX6_METSD Length = 171 Score = 168 bits (427), Expect = 7e-41, Method: Composition-based stats. Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 1/162 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSF 64 ++ LY HHGWL WL R+L A D+AQDTF+RV+ + + +PR+F Sbjct: 2 SSAPHHEVHKLYNIHHGWLVEWLRRRLGCVHHAHDLAQDTFVRVLDKPLVIQGVHEPRAF 61 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L IA +MVD FRR A+E+AYLE L +P S EER +E L +D+M GLN Sbjct: 62 LSRIAHGLMVDQFRRRAIEQAYLEALQHLPTRHMESAEERMMNIEALMRIDAMFAGLNPN 121 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 R AFLLS+L G+TY +IA ++ VS+ SV+ Y+AKA+ H L Sbjct: 122 IRTAFLLSRLHGMTYPDIAREMNVSLRSVEGYMAKAIGHLLA 163 >UniRef50_Q4KBG5 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonadaceae RepID=Q4KBG5_PSEF5 Length = 177 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 70/164 (42%), Positives = 98/164 (59%), Gaps = 1/164 (0%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLC 66 + + SLY HH WL L R+L A+DA D+A D F+RV+ L RS+L Sbjct: 7 ASPDSVHSLYDAHHRWLYELLRRRLNHAWDAADLAHDIFVRVLKRPPVLRDEVHQRSYLA 66 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 T+A+ + +D +RR LE+A+L+ LA P+ PS E++ +ETL +D+ML L K R Sbjct: 67 TVARGLCIDHWRRRQLEQAWLQALAARPQAVQPSAEQQAIIVETLYEVDAMLSRLPAKVR 126 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 AF+L+QL G Y IA +LGVS VKKY+A+A+ HC L E Sbjct: 127 SAFILAQLHGRPYQAIADELGVSERMVKKYLAQALLHCALLEAE 170 >UniRef50_D1P6G0 RNA polymerase sigma factor, sigma-70 family n=4 Tax=Providencia RepID=D1P6G0_9ENTR Length = 178 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 5/161 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y + H L + +L ++ DADD++QD F + + +++ R++L IA V++D Sbjct: 15 YQSTHSQLVRFFRNRLGNSNDADDLSQDVFTLWLNRKAEDPVKESRAYLFKIASNVLIDH 74 Query: 77 FRRNALEKAYLEMLALMP-----EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +RRN + + + E A P E + + L +D L + REAFLL Sbjct: 75 WRRNQQQNQSATSIDDVAHEHSFEQTAADPSEILEHQQRITQLSEAIDLLPPRRREAFLL 134 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + DGL+ SEIA ++ +SIS V+K++A A+ HC + + G Sbjct: 135 YRFDGLSQSEIAERMEISISMVEKHIAAALVHCKKYLEDQG 175 >UniRef50_D1ST93 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1ST93_9BURK Length = 171 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 64/152 (42%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKRVM 73 +LY HHGWL +WL RKL A D+A DTFLR++ + T L T+R+PR++L T A+R++ Sbjct: 14 ALYCEHHGWLLAWLRRKLGCGHQAADVAHDTFLRILGTPTVLPTLREPRAYLVTTARRLL 73 Query: 74 VDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +D RR +E+AYL+ LA++ G PS E+ ++ L +++ L L+ + ++AFLL Sbjct: 74 IDEARRRVIEQAYLDALAVVAGTDGGPSTEQVVETIQALVRIEAALQDLSARAQQAFLLH 133 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L+GL ++E+A LGVS V+KY+ +A+ C Sbjct: 134 YLEGLPHAEVAAALGVSTRMVQKYLVQALVCC 165 >UniRef50_A9C155 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Proteobacteria RepID=A9C155_DELAS Length = 159 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 3/158 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS---ETLSTIRDPRSFLCTIAKRV 72 +Y H+ WL +WL R+L + DA D+AQDTF R+ S + + I++PR++L T+A+R+ Sbjct: 1 MYAQHNHWLVAWLQRRLDNRCDAADLAQDTFTRIWASARTQAIEDIQEPRAYLTTVARRL 60 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +V+ R +LE+AYL L L+P PS E R LETLQ LD++LD L K R AFL+S Sbjct: 61 LVNHLERRSLEQAYLASLHLLPPATVPSVEARAMLLETLQELDALLDALPAKVRMAFLMS 120 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 QL+G++Y +IA + +S+ +V +Y+A+ CLL LE Sbjct: 121 QLEGMSYEDIAAHMQLSVRTVTRYMAQGFRQCLLAMLE 158 >UniRef50_Q6FD19 Putative RNA polymerase sigma factor n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FD19_ACIAD Length = 171 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 92/151 (60%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 LY H+GWL WL +KL SA +A+D+ QDTF +++ S+ L I+ P+++L T AKR+++ Sbjct: 14 ELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILI 73 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 D R +E++YLE LA SPE+ ++ L L +LDGL + + AFL+ + Sbjct: 74 DRARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHYI 133 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 DGL+ +IA +L V+ ++ + K + HC Sbjct: 134 DGLSLVDIATRLKVTSRTIHYDLVKTLSHCY 164 >UniRef50_A1BCE5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCE5_PARDP Length = 166 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 93/162 (57%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 A +LY HHGWL WL RKL + DA D+A DTFLR++ S PR+ Sbjct: 2 SAGGNPRCELHALYADHHGWLHGWLRRKLGDSGDAADLAHDTFLRLLASRRSRLGERPRA 61 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 L IAK ++ D +RR +E+AYL+ +A +P P EER +E L +D+ML L Sbjct: 62 LLTHIAKGLLADHWRRQRVERAYLDTIAHLPAVQVPPAEERLLVIEALTRIDAMLGRLPA 121 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 TRE FLL+Q DGLT +I+ + + +V++++ KA+ C+ Sbjct: 122 FTREVFLLAQFDGLTLQQISERTQAPVITVRRHIRKALLACM 163 >UniRef50_B4EXQ8 ECF-family sigma factor n=7 Tax=Enterobacteriaceae RepID=B4EXQ8_PROMH Length = 182 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 5/156 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y + +G L + ++ + DADD++QD F + + + +++ R+FL IA V++D Sbjct: 15 YQSTYGQLVRFFQKRTGNHHDADDLSQDVFTLWLNRKEQTPVQEQRAFLFKIANHVLIDH 74 Query: 77 FRRNALEKAYLEMLALMPEGG-----APSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +R+N +K + + + P + L LL +D L + REAF+L Sbjct: 75 WRKNQKQKNIYQEDYQLEDAVQTYTTELDPGHVLEHQQRLDLLTQAIDTLPPRRREAFIL 134 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + DGL+ SEIA ++ +SIS V+K++A A+ HC + Sbjct: 135 YRFDGLSQSEIAEQMEISISMVEKHIAAALLHCKRY 170 >UniRef50_A3HXR4 Putative RNA polymerase ECF-type sigma factor n=1 Tax=Algoriphagus sp. PR1 RepID=A3HXR4_9SPHI Length = 193 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 1/167 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD-PRSF 64 + E L+ ++ L + L +A+++ Q F++ I+ +S+ Sbjct: 13 KSGDEKALEMLFKEYYQPLCRYANSYLPDPDEAEEVVQSCFIKFWEKREKIDIQSSVKSY 72 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L I + ++ + +++ Y EM+ E + + +E+ E + + + L + Sbjct: 73 LYQIIRNACLNEIKHQRVKRNYSEMVIQKGEDFSGASDEKTIHDELEDKIRNAIQKLPQQ 132 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R F +S+ + L Y EIA +L +SI +V+ + KA++ + EY Sbjct: 133 CRVIFTMSRFEELKYQEIADQLNISIKTVENQMGKALKMMRIQLQEY 179 >UniRef50_Q52208 PupI protein n=1 Tax=Pseudomonas putida RepID=Q52208_PSEPU Length = 173 Score = 164 bits (417), Expect = 8e-40, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 102/152 (67%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H WL WL ++L + A D+AQDTF+R++ E + + PR+FL +A+ V+ + Sbjct: 15 LYRQQHSWLTRWLRQRLNCSQSAADLAQDTFIRLLNKEQVPQLHAPRTFLAKVAQSVLCN 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 +RR LE+AYLE LA++PE PS E + LETL LD+ LDGL REAFLLSQ+D Sbjct: 75 HYRRQKLERAYLEALAMLPEPVVPSLETQAILLETLIALDAALDGLERPVREAFLLSQVD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 GL ++EIA +L VS+++VK+Y+ KA C++ Sbjct: 135 GLGHTEIAQRLAVSVTTVKRYIIKAGALCIML 166 >UniRef50_B3PLR0 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PLR0_CELJU Length = 172 Score = 163 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 4/163 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAKR 71 FE ++ HH L+ +L R++ A D+ QDTF+R + E I+ R++L IA+ Sbjct: 8 FEDVFKEHHKELEQFLRRQVNDPDMAADLVQDTFIRFKPLYEKPPGIQKVRAYLFRIARN 67 Query: 72 VMVDLFRRNALE--KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 +++D FRR + + E + PE R + + L+ + + +D L + R+ F Sbjct: 68 LVIDHFRREQIRCTDSVPEDILDEIPTEVAGPEVRAASQQRLENIRAAVDQLPPRCRDVF 127 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 ++S++ G+T +EI L +S +V + KA+ L +L+ G Sbjct: 128 IMSRVQGMTLAEIGLALNISPKTVFSHFTKAL-QLLKSQLDEG 169 >UniRef50_A6EA47 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EA47_9SPHI Length = 201 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 1/166 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSF 64 + F +LY + L + + + A ++ QD F+++ E L + +SF Sbjct: 20 ASGDQHAFTTLYRNYSSRLFAKINHLVNDDEIAKELLQDVFMKLWSQREKLDPTKSIKSF 79 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA ++ D FR+ A +K Y + EE E+LQL+ +D L + Sbjct: 80 LFTIAVNLVYDHFRKLAKDKKYARSILQTAVDYYSHTEEEMHSKESLQLIRQAIDQLPPQ 139 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 R+ FL+ ++DG +Y ++A++L +S S+V+ ++ K + + L+ Sbjct: 140 RRQIFLMCKIDGKSYEQVANQLSISPSTVRDHIVKGNKIVRDYLLK 185 >UniRef50_D0S2J0 Putative uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2J0_ACICA Length = 173 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTI 68 + F +Y + L SW KLQ ++D++Q+ F R + SE + I++P+++L I Sbjct: 13 QVWFSQIYRSQQTTLLSWFKHKLQHHHQSEDLSQEVFYRALKSEYSFKQIKEPQAWLMGI 72 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 AK V++D +RR +E YL+ L +PE PS E ETL + +L+ L +T + Sbjct: 73 AKHVIIDHWRRQHIENLYLDALQHLPEEYYPSAEHEVYIQETLYQVHLILEKLPTRTAQV 132 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 FL+SQLDG+TY EI+ K+ +S ++VK+ + +A C+ Sbjct: 133 FLMSQLDGMTYREISEKINISEATVKRDMKQAFLACIDL 171 >UniRef50_B1KAJ1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KAJ1_BURCC Length = 183 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 104/167 (62%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + D T + + S + + WLKS L R++ S DA+D+A +F + + L+ +RD Sbjct: 16 VDDERTRSRAAWLTSEFRASYAWLKSKLQRRVGSPADAEDLASSSFAELAGMQDLTAVRD 75 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 R+FL IA+R+ +++RR LE+AYLE LA E PS E + L L+D L+G Sbjct: 76 ARAFLTVIAQRLTYEMWRRRDLERAYLETLAHREEAVTPSAESMAEVTQALLLVDQALNG 135 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L+ + AF++SQ+DGLT++EIA +LGVS+S V+KY+A+A+ C L Sbjct: 136 LSPNAKSAFIMSQIDGLTHAEIAERLGVSVSMVRKYIAQALTQCYLM 182 >UniRef50_B0KPE9 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Proteobacteria RepID=B0KPE9_PSEPG Length = 175 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 71/163 (43%), Positives = 102/163 (62%), Gaps = 3/163 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRS 63 A + + E LY HHGWL SWL RKL+ + A D+AQDTF+R++ S L +R+PR+ Sbjct: 4 ADSPSPYPLEQLYSEHHGWLFSWLRRKLRCSHSAADLAQDTFVRILASRDALLGMREPRA 63 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGL 121 +L T A+R+++D RR +E+AYL LAL E G PE LE L+ + +L+GL Sbjct: 64 YLSTTARRLLIDQARRRQIEEAYLSELALTAELLEGHQPPENILITLEALEQIAFLLEGL 123 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 + REAF+ LD LT +IA +L +S V+KY+A+A+ HC Sbjct: 124 HVNAREAFVGYYLDELTQPQIAQRLQISPRMVRKYLAQALIHC 166 >UniRef50_C4SII1 DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=2 Tax=Yersinia RepID=C4SII1_YERMO Length = 172 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 2/154 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 + + Y H GWL+ WL +K+ A D+ DTF++++ S IR PR++L A V Sbjct: 8 WSTFYLAHQGWLRGWLRKKVGCHHSAADLTHDTFIKLLTMADPSVIRQPRAYLMVTANHV 67 Query: 73 MVDLFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSMLD-GLNGKTREAFL 130 M+D FR+ LE+ L LA M E S EER + + + +L L AFL Sbjct: 68 MIDQFRKRKLEQDALVALAQMAEETHEQSAEERAAVSQLVAQAVQILASELEDHVCRAFL 127 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +++++G +YSEIA LGVS SSVK+Y+AKA+ HC Sbjct: 128 MARVEGYSYSEIAEVLGVSESSVKQYLAKALIHC 161 >UniRef50_Q2L0R0 RNA polymerase sigma factor n=1 Tax=Bordetella avium 197N RepID=Q2L0R0_BORA1 Length = 163 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKR 71 +++ H+ WL W R+L A +A D+A DTFLRV+ E +S +R PR++L IA+ Sbjct: 5 LQAVCEDHYVWLCQWWRRRLDHADEAADLAHDTFLRVLRKPEEISCLRQPRAYLTPIARG 64 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ D +RR +LE+A+LE LA +P +P+ + LQ LD ML L + RE F+L Sbjct: 65 LLNDHWRRRSLERAWLEALAQLPPEYEIAPDMLLQMQQALQHLDDMLAALAPRAREVFVL 124 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 SQL+GL+Y++IA + G++ +VK+Y+A++ EHCL Sbjct: 125 SQLEGLSYAKIAAQTGLNERTVKRYMAQSFEHCLTL 160 >UniRef50_Q4KDP7 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas RepID=Q4KDP7_PSEF5 Length = 171 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 96/168 (57%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 + LY H WLK+WL +L + A D+AQDTFLR++ I+ PRSF Sbjct: 2 PAPAQASDLTQLYRQQHQWLKNWLRLRLNCSHSAADLAQDTFLRLLAKPEPVQIQAPRSF 61 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L +A+ V+ + +RR LE+AYLE L +P P E + LETL LD++L+ Sbjct: 62 LAKVAQSVLSNHYRRQKLERAYLEALQHVPAHVVPDLETQAILLETLMQLDAVLERQEPA 121 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 R+AFL QL+GL + +IA +L VS+++VK+Y+ KA C+L G Sbjct: 122 VRQAFLWWQLEGLGHEQIAERLQVSVTTVKRYIIKAGAQCILLDDSLG 169 >UniRef50_C4TZ61 Sigma factor, ECF subfamily n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TZ61_YERKR Length = 179 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 5/153 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 + ++ L ++ RKL++ A+D+AQ+TF+R + IR RS L IA+ +++D Sbjct: 4 FEKYYTELYRFINRKLRNRDHAEDLAQETFIRALTVP--LPIRSHRSLLYRIARNLLIDH 61 Query: 77 FRRNALEKAYLEMLALMPEGGAPS---PEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 +RR A + APS P E + + L+ ++ L + REAF+L + Sbjct: 62 YRRPDTHIHEPSEEADESDFAAPSYLQPYELIEESQYNALMTQTIEALPPRCREAFILHR 121 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 DGL+ E+A ++G+SI+ V+K++ +A+ C + Sbjct: 122 FDGLSQKEVASQMGISINMVEKHIIRAMLACRV 154 >UniRef50_B7VA10 Probable sigma-70 factor, ECF subfamily n=6 Tax=Pseudomonas RepID=B7VA10_PSEA8 Length = 169 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 102/164 (62%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D + + L+ ++ WL L+ + + A+D+A + FL+V + ++IR PR Sbjct: 2 DSQGSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPR 61 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +FL TIA+R+M + +RR LE+AYL++LA PE PSP E+ +E+LQ +D +LDGL+ Sbjct: 62 AFLATIAQRLMYESWRRKDLERAYLQILAEAPEAVQPSPHEQWMLIESLQAIDRLLDGLS 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 G+ R FL+SQL+GLTY +I +LG+S+ + + + A+ C Sbjct: 122 GQARAVFLMSQLEGLTYVQIGERLGLSLGRIHQLMKDALHCCYR 165 >UniRef50_Q4K9A6 RNA polymerase sigma-70 factor, ECF subfamily n=19 Tax=Pseudomonas RepID=Q4K9A6_PSEF5 Length = 177 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 +L ++ L +L KL + A+D+ D ++RV+ + + I PR+FL A +++ Sbjct: 17 ALLENYYRELMCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVI 76 Query: 75 DLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 D RRNAL ++ LE+L PSP+ + L++L L L RE+FLL + Sbjct: 77 DGHRRNALRQSEPLEVLDNEERYFNPSPQTSLDHGQRLEMLQRALAELPRLCRESFLLRK 136 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L+GL++ +IA +LG+S S V+K++ A++HC Sbjct: 137 LEGLSHPQIAEQLGISRSLVEKHIVNAMKHCR 168 >UniRef50_C2G377 RNA polymerase ECF family sigma factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2G377_9SPHI Length = 202 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 87/163 (53%), Gaps = 1/163 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSF 64 + + +E L+ + + + + ++S A+DI Q+ F++V + L I++ +++ Sbjct: 15 SEGSQNAYELLFSRYWTHVFAVVRLLVKSQEQAEDITQEIFVKVWNRRKDLEEIKNIKAY 74 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA+ +D R+ L LE + A +P +R E ++ + L K Sbjct: 75 LYTIARNTTLDHLRKKVLVTENLEQMIHYFTDHALTPVQRIEYKELEDIISKGIATLPSK 134 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +E F++S++DGL++ EIA +L +S++S K YV +A++ L+ Sbjct: 135 VKEVFVMSRIDGLSHEEIAARLDISVTSSKTYVVRALKLLRLY 177 >UniRef50_B7X446 Transcriptional regulator, LuxR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X446_COMTE Length = 187 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 106/168 (63%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 + R + + L+ HH WL S L +L++ +A D+A +TFLRV+ + I +P Sbjct: 6 TPRPSLDPMQQAQQLFTGHHAWLLSRLKARLRNTAEAQDVASETFLRVVAAPNPVPIDEP 65 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 R+FL TIAKR++ L+RR LE+AYL+ ++ P APSPEER LETL + LDGL Sbjct: 66 RAFLTTIAKRLLFTLWRRRELEQAYLQAMSESPPEQAPSPEERALLLETLDTIAHALDGL 125 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 + K R+ FLLSQLDGLTY IA +L +S S+V++++ +A + +L Sbjct: 126 SLKARQTFLLSQLDGLTYHAIAEQLDISHSTVRRHMTEAFRRIAIAQL 173 >UniRef50_A9IDD4 RNA polymerase sigma factor n=6 Tax=Proteobacteria RepID=A9IDD4_BORPD Length = 200 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 3/160 (1%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP---RSFL 65 +S ++LY HH WL++WL R+L +A DA D+A + FLR+++ P R++L Sbjct: 24 SSPPIDTLYADHHAWLRAWLQRRLGNAADAADLAHEAFLRLILKPASRGFGSPLEARAYL 83 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 +A+ + ++L+RR +E+A+L+ LA P APS E + LE LQ + +L L GK Sbjct: 84 RAMAQGMCINLWRRREIEQAWLDTLAAQPPAYAPSAERQAMVLEALQEIAELLHSLPGKA 143 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 +AFL+S + G+T +++ +LGVS V+KYVA+A+ C+ Sbjct: 144 AQAFLMSAVCGMTAADVGGELGVSSRMVRKYVAQAMLRCM 183 >UniRef50_A5VWU6 RNA polymerase, sigma-24 subunit, ECF subfamily n=14 Tax=Pseudomonas RepID=A5VWU6_PSEP1 Length = 173 Score = 158 bits (401), Expect = 6e-38, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 113/170 (66%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 M ++ ++ + ++LY HHGWL +WL KL +A DA D+AQDTF+R++ + Sbjct: 1 MPAPSSMPSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNA 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR+FL T+A+ +++D +RR L +AYLE LA +PE APS E RE LE L+ + MLDG Sbjct: 61 PRAFLRTVARGLVIDHWRREELHRAYLEALAHVPEALAPSVETRELLLELLERIARMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L K R AFLL+Q +GL + IA ++G+S+ +V++Y+A A+ HC + R E Sbjct: 121 LKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYVLRYE 170 >UniRef50_A5FNM7 ECF subfamily RNA polymerase sigma-24 subunit n=7 Tax=Bacteroidetes RepID=A5FNM7_FLAJ1 Length = 171 Score = 158 bits (401), Expect = 6e-38, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 4/171 (2%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 +++ T + F S + +H L+++L K + A+DI Q+ F+++ + + + Sbjct: 5 NQSDTCDEIIFSSFFKSHAKALRNFLLYKFGNIEQAEDITQEAFVKLWQNCASVPLEKAK 64 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 S++ TIA ++ + Y + + + SPE + + L ++ LN Sbjct: 65 SYIYTIANNSSLNQIAHQKVVLKYEKNFTGLDKTNE-SPEYILEEKQFQAKLLKAIENLN 123 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 K R AFL+ ++DG YSEIA +L +S+ +V+K + A+ L R E L Sbjct: 124 EKQRTAFLMHRIDGKKYSEIAAELNISVKAVEKRIHLAL---LSLRKEIDL 171 >UniRef50_A4STR8 RNA polymerase sigma factor FecI n=3 Tax=Gammaproteobacteria RepID=A4STR8_AERS4 Length = 172 Score = 158 bits (401), Expect = 7e-38, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 95/170 (55%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 +R + +++LY +HGWL L RKL +++DA D+A D +L ++ + + R Sbjct: 2 EREACSLQEQWQTLYRDNHGWLCRLLRRKLGNSYDAADLAHDIYLHLINKGHIPAASESR 61 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +L IAK ++DL+RR +LE YLE P PS E R E L +D L Sbjct: 62 RYLMQIAKGKLIDLYRRRSLEARYLERQTQQPALREPSEETRALMREALGAVDMALQRKP 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 K R+A LLS+L+G+ Y +IA +L VS+SSV+KY+A ++ C + G Sbjct: 122 PKIRQALLLSRLNGMGYQDIATELQVSVSSVEKYIALGLQTCHQCESDAG 171 >UniRef50_C6X945 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Betaproteobacteria RepID=C6X945_METSD Length = 175 Score = 158 bits (400), Expect = 8e-38, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 94/151 (62%), Gaps = 2/151 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H GWL WL +KL A DI+ DTF R++ + L IR+PR++L A R+M++ Sbjct: 16 LYRHHQGWLMGWLRKKLGCPHHAADISHDTFSRLLALDNLPDIREPRAYLLVTANRLMIN 75 Query: 76 LFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSML-DGLNGKTREAFLLSQ 133 FR+ +E+ L+ +AL+ + + SPE S + L + ML + L+ K R A LL++ Sbjct: 76 EFRKRQVEQETLQAVALLNADDSSHSPETICSARQLLAQVLLMLSEELDEKARRALLLAR 135 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +DGL Y EIA + VS SSVK+Y+++A+ HC Sbjct: 136 VDGLGYREIAATMQVSESSVKQYLSRALVHC 166 >UniRef50_C1DIP0 RNA polymerase sigma factor, FecI family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DIP0_AZOVD Length = 234 Score = 158 bits (400), Expect = 8e-38, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 1/166 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T A + ++ L +LT +L+ A D+ D ++R++ S ++ P+++L Sbjct: 49 KTVACFKLGGIMEKYYQQLVRYLTTRLRDRHLAADVVHDAYVRILEGGHGSLVKYPQAYL 108 Query: 66 CTIAKRVMVDLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 A + +D RR + ++ LE + SP++ + L++ L+ L+ Sbjct: 109 YRTAINIAIDTHRRETVRRSESLEDIEPHAAEQFLSPQDSLYLRQRATLVERALNELSEN 168 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 R+AFL+ +LDGL ++EIA ++G+S V+K++ A+ HC + E Sbjct: 169 CRKAFLMRKLDGLGHTEIAARMGISKDMVEKHIVNAMRHCRIRVRE 214 >UniRef50_C6W4E3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W4E3_DYAFD Length = 206 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 1/167 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSF 64 FE + T++ L ++ L+ +++++ Q FL + I +S+ Sbjct: 22 RRGDEQAFEQTFRTYYQRLCNYACTMLKDEEESEEVVQTVFLTIWEKREDLEITLSLKSY 81 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L ++ F+ + +A+ + G S E E + ++ + L + Sbjct: 82 LYRAVHNHCLNRFKHATVREAHKDYTMYFSSGSYDSVTEVIHAGELEERIERAVSTLPEQ 141 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 ++AF LS+ + L Y EIA +LG+SI +V+ + KA++ +Y Sbjct: 142 CQKAFRLSRFEELKYQEIADQLGISIKTVENQIGKALKILRAELADY 188 >UniRef50_A8UKN6 RNA polymerase ECF-type sigma factor n=3 Tax=Flavobacteriales RepID=A8UKN6_9FLAO Length = 170 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 5/170 (2%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D S TFE++Y T+ ++ +L K Q A+DI QD F+++ + + + Sbjct: 4 DNRNICHSKTFETIYKTYAKDIRRFLFFKTQDIDKAEDILQDVFIKLWDNCSKVDYNKVK 63 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 S++ +IA + ++ + + + + + E SPE + E ++ L+ + L+ Sbjct: 64 SYMYSIANNMFLNEIKHQKVVQNFSKY--NKKESTNESPEFIMLEKEFMEKLEDTIASLS 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 K RE FL+++++ Y +IA +L +S+ +V+K + +A+ ++ R E G Sbjct: 122 EKQREVFLMNRIEKKKYKDIALQLDISVKAVEKRMHQAL---VIMRKEIG 168 >UniRef50_Q1LG57 Sigma-24 (FecI-like) n=2 Tax=Burkholderiaceae RepID=Q1LG57_RALME Length = 169 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 98/161 (60%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A ++LY HH WL WL RK+ + D+A DTF+R++ E I +PR+F Sbjct: 3 ADAGPHHDIQALYSCHHRWLLGWLHRKIGCWHRSADLAHDTFMRLLAREEALAIAEPRAF 62 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L T+A+RV+ + +RR LE+AYLE LA P APS EER LETL + LDGL Sbjct: 63 LTTVAQRVLANQWRREKLEQAYLEALASRPAALAPSEEERAILLETLNDIAERLDGLPVV 122 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + AFL++QL+G + +EIA L +S+++VK+Y+ +A C Sbjct: 123 VKRAFLMAQLEGQSQAEIASALRISVTTVKRYLVRAGTKCY 163 >UniRef50_A6VD05 Probable sigma-70 factor, ECF subfamily n=9 Tax=Proteobacteria RepID=A6VD05_PSEA7 Length = 178 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 5/169 (2%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQS--AFDADDIAQDTFLRVMVSET---LSTIRDP 61 + + +LY +H WL+ WL +L+S ADD+AQDTFLR++ S IR P Sbjct: 9 SADRGSVATLYLENHAWLRGWLAYRLRSWGREVADDLAQDTFLRILASHDAAQREAIRQP 68 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 R++L IA V+V RR +LE A+LE LA +PE PSPE++ +ETL +D++LD L Sbjct: 69 RAYLTRIATCVLVSWRRRQSLELAWLEALATLPEPLQPSPEQQSVIVETLHEIDALLDTL 128 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + ++AFL++ LDG+ +IA L V++ +VKKY+ + CL + Sbjct: 129 RPRVKQAFLMATLDGMRQKDIAEALDVALPTVKKYIHQGFLTCLSLMPD 177 >UniRef50_C6XVW4 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVW4_PEDHD Length = 202 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 85/169 (50%), Gaps = 1/169 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPR 62 R T F +Y + + + + AD++ Q+ F+R+ E + + + Sbjct: 15 RLKTGDETAFNGIYEAYSKPMYLKILSMTKDKDVADELLQELFIRLWDNKEKIIPGKSFQ 74 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 S+L TI + ++ + FR+ A + + +E + L + EE E+ LL + +D L+ Sbjct: 75 SYLYTITRNLVYNYFRKVASDNSLIEQMLLRGTDHYLNAEEVLLSKESAALLKNAIDQLS 134 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + + F L ++DG +Y E++ LG+S+++V ++ K+++ + +++ Sbjct: 135 PQRKMVFELCKIDGKSYDEVSKLLGISVATVNSHITKSMQLIKAYLIKH 183 >UniRef50_D0TET6 RNA polymerase sigma factor n=2 Tax=Bacteroides RepID=D0TET6_9BACE Length = 395 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 1/161 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSF 64 FE+L+ ++ + ++ L A+D+ Q+ FL++ ET+ ++ ++ Sbjct: 12 KNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDAY 71 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA+ ++ L + E L EER + ++S+++ L Sbjct: 72 LFTIARNLVYKETENRLLSEKLTESLQRQLSDADSLTEERIDAESLREYINSLIEELPPS 131 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 RE F LS+ + L+Y EIA +L +S +V+ V +A+ Sbjct: 132 RREIFRLSRHEHLSYREIAERLSISEKTVETQVNRALRFLR 172 >UniRef50_C6X947 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X947_METSD Length = 174 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 68/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 E LY HH WL+ WL +KL A A DIAQDTFLR+M S L +++PR+FL A R++ Sbjct: 14 EMLYTQHHSWLQGWLRKKLGCAHGAADIAQDTFLRLMASRDLLLLQEPRAFLTRTATRLL 73 Query: 74 VDLFRRNALEKAYLEML-ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +D R +E YLE L A + + AP P + + L L S+L+ L K REAFL++ Sbjct: 74 IDDARHKKIEALYLEELAAQLEQAHAPDPAKILEAVRALAYLVSVLETLPQKPREAFLMA 133 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 QL+ L + EIA +L VS V+KY+ +A+ HC Sbjct: 134 QLEELGHDEIARRLSVSTRMVRKYLVQALVHC 165 >UniRef50_C7PH14 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PH14_CHIPD Length = 188 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 2/166 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 + + F +Y ++ L ++ + ++S ++I Q+TF R+ + + + Sbjct: 14 QIGEGNEIAFRKVYYHYYRQLYGFVLKAVKSDPVTEEIVQETFARLWENRAALGEKGYSA 73 Query: 64 -FLCTIAKRVMVDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGL 121 +L +A + D R+ A E Y +L+ P E A + + +++ LL +D L Sbjct: 74 PWLFRVAANLSFDYMRKAAHEAKYFNLLSASPGEPSANNVADYIEGVQSNHLLHEAIDSL 133 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + R F LS+L GL++ EI+ L +S ++VK + A++ F Sbjct: 134 PPQRRTIFRLSRLKGLSHQEISQHLNISENTVKNQLVTALKAVRQF 179 >UniRef50_B7KZS3 RNA polymerase, sigma-24 subunit, ECF subfamily n=7 Tax=Rhizobiales RepID=B7KZS3_METC4 Length = 180 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 4/170 (2%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A A ++ ++LY L+ +L R L + DA D +Q+T+LR++ + + ++I P + Sbjct: 9 AGGAAGVSIDALYRHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRTSIEHPSAL 68 Query: 65 LCTIAKRVMVDLFRRNALEKAYL----EMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 L IA V + + R LE+ E G PE + + L+ L + +D Sbjct: 69 LFRIATNVALRMRNRGRLERILFAAKCEAELAEIADGYALPERQTIARQELKRLAAAIDA 128 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L + RE FLLS+LDGL EIA +LG+S + V+K++ KA+ HC RL+ Sbjct: 129 LPPRCREVFLLSRLDGLANGEIAQRLGISRNMVEKHIIKALLHCRRSRLD 178 >UniRef50_D0TT72 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=D0TT72_9BACE Length = 206 Score = 155 bits (392), Expect = 8e-37, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 8/170 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + D + FE L+ T++ L+ + R ++ A DI Q+ FLR L + Sbjct: 10 LLDEIKKGNNQAFEYLFKTYYPRLRGYAIRFVEDEETARDIIQECFLRFWEKRALLSAVS 69 Query: 61 PRSFLCTIAKRVMVDLFRRNA-LEKAYLEMLALMP-------EGGAPSPEERESQLETLQ 112 S L + + ++ + + +EK +E LA + A E + E + Sbjct: 70 VTSLLFAMVRNGCLNYLKHLSIVEKHQIEYLASVDGEERLYYSDFALDAEHKLLYDELQE 129 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 ++ ++ L ++RE FL+S+ GL EIA KL +S ++V+K++AKA++ Sbjct: 130 QINIVIGQLPERSREIFLMSRFKGLKNREIADKLQISTTAVEKHIAKALQ 179 >UniRef50_B0KLJ1 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Pseudomonas putida GB-1 RepID=B0KLJ1_PSEPG Length = 168 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRS 63 +T+T L F + HH WL + ++L++ DA+D A +TF +++ + +I+ PR+ Sbjct: 3 STSTRKLGF--FFSDHHRWLLQHIHKRLRNHADAEDTAAETFCQMLGARVDPDSIQQPRA 60 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L IA+R++ D RR LE AYLE LA +PE APS EE+ +E L +D LDGL Sbjct: 61 YLTIIARRLIFDRHRRRQLEHAYLEHLARLPEAVAPSAEEQLLLIEALVTIDQALDGLPA 120 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + FL SQLDG+ Y++IA KL +S SV +Y+ +A+ C L ++ Sbjct: 121 VVKATFLYSQLDGMHYADIAAKLQISERSVSRYMKQALRQCYLCEVQ 167 >UniRef50_D1W083 RNA polymerase sigma-70 factor n=2 Tax=Prevotella RepID=D1W083_9BACT Length = 195 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 81/162 (50%), Gaps = 2/162 (1%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRSFL 65 T +F+ ++ ++ +K+++ + +A+DIAQD FL++ + I + ++L Sbjct: 25 TENDYSFDVIFKLYYPKVKNFVYGFVGVESEAEDIAQDIFLKLWMKRNSIQIMTNFEAYL 84 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 T+A+ ++ + +++ L+ L E+ E +L++ + + + Sbjct: 85 YTMARNCTLNALKSSSIRHK-LQSLTDADVVADTGVEDIIYSEELHELINRVTSQMPDQR 143 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 R F +S+LDG++ EI H+L +S +V+ ++++A+ Sbjct: 144 RRIFTMSRLDGMSNEEIGHRLNISKRTVETHISQALAQIRRL 185 >UniRef50_Q4KBX1 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KBX1_PSEF5 Length = 230 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 3/173 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIRD 60 +DR + + + H+ L +LTR++ A D+AQ+T+L+++ + + + + Sbjct: 56 ADRPPMLPTPSLLRSFQEHYDDLLKFLTRRMSDRQRAADVAQETYLKLLKVDPQTVEVHN 115 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSML 118 R F+ +A + +D RR A L E AP+PE E L +LD L Sbjct: 116 DRGFIFRVAGNLAIDTLRREQRLAANLSDGQEHAEAVDPAPAPEAVLLAKERLAVLDEAL 175 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L+ R+A LL++L+GLT ++IA +LGVS S V KY+ +A+ HC + + Sbjct: 176 AQLSDNARQALLLNRLEGLTQAQIALRLGVSESMVAKYIGQALRHCRDWLKVH 228 >UniRef50_C3Q8S3 RNA polymerase ECF-type sigma factor n=8 Tax=Bacteroides RepID=C3Q8S3_9BACE Length = 181 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 87/156 (55%), Gaps = 4/156 (2%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD-PRSFLCTIA 69 L F+ + + +K++ + L+S DA+DIAQD F+++ L R+ S+L T+ Sbjct: 11 LRFKKFFDLNFPKVKTFAWQLLKSEEDAEDIAQDIFVKLWEKPDLWLEREKLDSYLYTVV 70 Query: 70 KRVMVDLFRRNALEKAYLEMLAL---MPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 + + + + A+E YL++ A M E G P+P++ E + L+ + + R Sbjct: 71 RNHIYNFLKHKAVEYDYLDVAAEKMRMAELGLPTPDDEFCAHELELFVQMALERMPEQRR 130 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 FL+S+ +G+T EIA KL VS+ +V++++ KA++ Sbjct: 131 RVFLMSREEGMTSPEIAEKLNVSVRTVEQHIYKALQ 166 >UniRef50_C7PNV1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PNV1_CHIPD Length = 223 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 3/169 (1%) Query: 4 RATTTASLTF-ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 + F E+L+ T+ ++ + R +QS A+D+AQD F+++ + Sbjct: 37 QLLMENEDAFMEALFRTYFSFVCKTIYRIVQSNATAEDLAQDVFIKIWNRRAELHQVYFK 96 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 ++L A + +D +N ++ M M A + +T + + +D L Sbjct: 97 AYLHRAAINMALDYLDKNKRRGVHMPMEEYMEPVQAAPAGQSLH--QTTRHIQQAIDKLP 154 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 K RE F+LS+ + L+Y EIA L +S+ +V+ + A++ + +Y Sbjct: 155 EKCREIFILSRYEELSYREIATTLNISVKTVENQMMTALKKLRVSLQDY 203 >UniRef50_B5CYT2 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CYT2_9BACE Length = 187 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIRDPRSFLCTIAKR 71 F+S + H+ L + DA+DI Q+ F+ V ++ +++ T + Sbjct: 11 FKSRFQEHYSRLCRIAYGYVSDQDDAEDIVQELFISVWNKRLDDMPEKEFAAYMTTSVRN 70 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQ-LLDSMLDGLNGKTREAFL 130 V R+ + ++ P + P+E + +TLQ +++S LD L + RE FL Sbjct: 71 SCVSFLRKRRDDTVSIDA---YPASASCMPDEGPEEGKTLQDIMESALDTLPARCREVFL 127 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L++L GL Y EIA KL VS +V+ + KAV+ ++ E+G Sbjct: 128 LAKLHGLKYREIAEKLEVSEKTVENQMTKAVKLLRMYVAEHG 169 >UniRef50_A1ZW95 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZW95_9SPHI Length = 204 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 3/169 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSF 64 + L+ T + L + R + + +DI QD FL++ I+ +++ Sbjct: 18 KEGNEKVIQILFDTFYVSLCKTVNRIVHNTTITEDIVQDVFLKIWQKRGDLNIQISLKAY 77 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGA--PSPEERESQLETLQLLDSMLDGLN 122 L +A + R+ + + A E+ E ++ ++ L Sbjct: 78 LHKMAINAALSHLRKKYNTSSIDDASPQQISKHAFKEVATEKMEFKELELQVNEAINELP 137 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 K RE F+LS+ + L+Y EIA ++G+S +V+ ++KA++H Y Sbjct: 138 PKCREVFILSRYEELSYKEIAQQMGISPKTVENQMSKALKHLRKKLAAY 186 >UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WV3_NITEU Length = 197 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 4/169 (2%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 S +T S+ +LY H L+++L R A ++ Q+TF+R+M +T ++I++ Sbjct: 26 SPLSTMNPSVILANLYLRHFSELRAFLFRHTGCREIAAELTQETFIRIMGYQTDTSIQNA 85 Query: 62 RSFLCTIAKRVMVDLFRR--NALEKAYLEML--ALMPEGGAPSPEERESQLETLQLLDSM 117 R+ L IA + +D R E ++ L +P P + + L+ L Sbjct: 86 RALLYRIAGNLAIDHHRTCVKFPESVSIDDLPQHELPATELTDPARLVAARQLLEKLCIA 145 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 +D L + AF+L + DG +++EIA KLG++ ++V+K + +A+ Sbjct: 146 IDALPPQCHRAFVLHKFDGYSHAEIAEKLGITRNAVEKLLIRALIRLRQ 194 >UniRef50_A6KXC2 RNA polymerase ECF-type sigma factor n=6 Tax=Bacteroides RepID=A6KXC2_BACV8 Length = 200 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 1/162 (0%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFL 65 + F L+ + + + ++ A+DI QD FL V + I +FL Sbjct: 17 NGDKIAFSHLFSFYKSQVLYYCVHFVKDKEIAEDITQDIFLTVWEKKEDIRIEQSFSAFL 76 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 TIA+ + D+FR + E L E+ + +L+ L+ L+ + Sbjct: 77 YTIARNRIYDIFRSLSARSVLYEKLMEQAIDYVDDVEKSLEEKNIKELIAQALEQLSPRQ 136 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 RE F LS+ GL++ EIA +LG+S+ +V+ ++ A+E + Sbjct: 137 REIFELSRNRGLSHKEIAEQLGLSVYTVQDHIKNALEKIRAY 178 >UniRef50_C6DBT2 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Pectobacterium RepID=C6DBT2_PECCP Length = 173 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 104/151 (68%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 ++ + + WL L R++ +A+D+A + FLR+ L+ +++PR+ L T+AKRV+ + Sbjct: 15 IFRSDYRWLTEKLRRRIAYGCEAEDVASEAFLRLASLPNLANVQEPRAMLTTLAKRVLYE 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 +RR LEKAYL LA PE PSPEE++ +E L +D LDGL+ K R+AFL SQLD Sbjct: 75 NWRRRDLEKAYLTALASKPEFHHPSPEEQQLLMEALLTIDQALDGLSIKARQAFLFSQLD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 G+TY++IA +L VS+S V+KY+AKA+ +C L Sbjct: 135 GMTYADIAVQLDVSVSMVRKYIAKALTNCYL 165 >UniRef50_A7A9W6 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7A9W6_9PORP Length = 184 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 80/164 (48%), Gaps = 2/164 (1%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDP 61 + F+ LY + LK +LT +++ +A D+ QD F ++ ET+S + Sbjct: 11 EELGKGDHKAFDMLYIQYSPRLKHFLTGFIKNRDEASDMTQDIFYKIWTNRETISKVDSF 70 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 +++L +A+ ++ D + + +E+ Y + EE E L+D ++ + Sbjct: 71 KAYLFRMARNMIYDYYEHSLIEENYQQK-EQRRSTYDDLIEEELYARELSLLIDIAVEKM 129 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + R F++S+ DGL+ EIA +L +S +V+ ++ +A+ Sbjct: 130 PPQRRNIFIMSRKDGLSNEEIAQRLNISKRTVENHMTQALAELR 173 >UniRef50_C6Y3R1 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y3R1_PEDHD Length = 194 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 1/163 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + D + F +Y + + + L DA D+AQ+ F + T Sbjct: 12 LLDCLKSGDQQAFAEIYNRYWKVMYFHALKMLGDEDDAKDLAQELFATLWTKGTNLPFNS 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L A+ +++L ++ + + YL L+ E E+ + E L +++ + Sbjct: 72 NLSGYLYITARNKIINLIQQKKVRRDYLSALSAFAEEAGNGTVEQIDEKELLLIVEKEIQ 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 L K R+ F LS+ L++ EIA +LG+S +VKK + A+ Sbjct: 132 NLPVKMRQVFELSRKQFLSHKEIATQLGISDKTVKKQIGYAIR 174 >UniRef50_D2QTW1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QTW1_9SPHI Length = 227 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 7/164 (4%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCTIAKRV 72 E L+ +H L S R + S A+D+ D F + ++ I R +L + Sbjct: 55 ELLFRRYHQALCSHAVRFVYSKETAEDLVSDVFCKFWKTKAYENITSSYRYYLFRSVRNE 114 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPS---PEERESQLETLQLLDSMLDGLNGKTREAF 129 + R LE L+ L P + S P++ E L ++ +++ L + R+ F Sbjct: 115 AYNYLR---LEFQILDDLDTAPVLESASGQRPDQVLQFEEVLHRIEELVESLPPQCRKVF 171 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 LLS+ DG Y +IA +LG+SI +V+ ++ KA+ E+ L Sbjct: 172 LLSRFDGRKYQDIATELGISIKTVEVHIGKALGTVRKGLKEHWL 215 >UniRef50_Q2RUF6 Sigma-24 (FecI) n=2 Tax=Proteobacteria RepID=Q2RUF6_RHORT Length = 173 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 3/163 (1%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 + T++ LK+++ R+ S A D+ QDT++R +E ++ + R++L +A Sbjct: 9 SLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAE-IAMPDNVRAYLYRMAAN 67 Query: 72 VMVDLFRRNALEKAYL--EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 + +D RR+ L E L P+ + + + L +L + L K R F Sbjct: 68 LAIDHLRRDGARARGLCEETLLEDIPSAEPAVDRVVAARQELAILSRAVAELPEKCRIVF 127 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 LL + GLT ++A +LG+S +V+K++A+A+ HC ++ G Sbjct: 128 LLYRGRGLTMKQVAARLGISEKAVEKHIARAMVHCRKRMIDAG 170 >UniRef50_A6EHU0 Putative ECF-type RNA polymerase sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHU0_9SPHI Length = 197 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 1/163 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 ++ F +Y + + + + + L+ +A D+ Q+ F + + +L Sbjct: 15 LTALLKEADEQAFTEIYNRNWKLIYAHVYKMLRDEDEAKDVVQEVFGNLWIKAASLKNTL 74 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L T A+ + DL +N + YL +A + + +++L+ + Sbjct: 75 NISGYLYTAARNKVFDLIEKNKVRSDYLGEIASFVSDPLNEKVDHIDEKRIMEILEREIQ 134 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 L K +E F LS+ + L++ EIA KL +S +VKK V A++ Sbjct: 135 KLPPKMKEIFELSRKENLSHKEIAGKLNISEQTVKKQVQNALK 177 >UniRef50_C1DIF0 RNA polymerase sigma factor, FecI family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DIF0_AZOVD Length = 188 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 + H L +L ++ S A+D+ Q+T+LR+ I +PR++L IA + D Sbjct: 34 FIEHRDALLGYLRQRFGSPSLAEDLVQETWLRLARHTPERDIVNPRAYLFRIATNLGTDH 93 Query: 77 FRRN--ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 R +E + A P + L+ L ++D L + RE F+L ++ Sbjct: 94 LRHQNMGVEIQAEDEEIAQVPAQAVDPAREVQSHDDLERLLEIIDNLPPRCREIFILCRV 153 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 +GL++++IA +L +S S+V + KA+ Sbjct: 154 EGLSHAQIAERLNISKSTVVSQMVKALARL 183 >UniRef50_Q7W4H7 ECF-family sigma factor n=2 Tax=Bordetella RepID=Q7W4H7_BORPA Length = 162 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 1/149 (0%) Query: 18 GTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLF 77 ++ L +L RKL ++ DA D+AQ+ + RV+ I PR+FL A + DL+ Sbjct: 2 EQYYTELLRFLARKLGNSHDAADVAQEAYARVLDRNGSCAIVQPRAFLFRAALNLCTDLY 61 Query: 78 R-RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 R R + L+ A AP +ER + + L L+ L L R+AFL+ Q++G Sbjct: 62 RNRRGSQVMPLDAAAEAVRCEAPLQDERLYRRQQLARLERALQELPPACRQAFLMRQVEG 121 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 +++ EIA+ LG+S+ V K++ +A+ HC Sbjct: 122 MSHDEIANSLGISVDMVHKHLTRALRHCR 150 >UniRef50_UPI000174534D RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174534D Length = 185 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 21 HGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN 80 + L+S+ ++ +A D+ Q+ F RV+ + + + PRS L IA+ +++D R Sbjct: 29 YERLQSFFQGQVGCTHEAKDLTQEAFTRVLSWQPKAQVTQPRSLLFRIARNLLIDRSRSR 88 Query: 81 ALEKAYLEMLALMPEGGAPS----PEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 A L P P++ + E L+ + + L + RE F+LS+ G Sbjct: 89 AKSHEISGPLTDEQLAATPDQSTAPDQHLAARENLRKVQVTIATLPDRCREVFILSRFGG 148 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L+Y EIA +L ++ S+V+K++ +A+ C Sbjct: 149 LSYPEIAERLAIAPSTVEKHMIRALTACRAC 179 >UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinomycetales RepID=A0QCH1_MYCA1 Length = 424 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 1/167 (0%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 TA +++ L H + R + DA+D+ Q+TF+RV S +L Sbjct: 75 KTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLH 134 Query: 67 TIAKRVMVDLFRRN-ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 I + +D+ RR + L P+PEE L + LD L + Sbjct: 135 RITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLGPDLQAALDSLPPEF 194 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 R A +L ++GL+Y EI LGV + +V+ + + + + + Sbjct: 195 RAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241 >UniRef50_C5PSA3 RNA polymerase sigma factor n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PSA3_9SPHI Length = 198 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 1/156 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSF 64 FE LY + + L +S D+ Q+TF+ V + L + +S+ Sbjct: 17 KNGDRHAFEQLYHFYKNHITGHLFYIFKSEELTQDVTQETFITVWENRFQLHADKSFKSY 76 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA DL R+ L+K + ++ + + E + + L +L L + Sbjct: 77 LYTIATNKAYDLLRKANLDKQLYDKVSSFIDSSSDEIYETLFVKQRSEQLHQILAQLPSQ 136 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 R F +++LDG +Y EIA LG+S +V ++ +A Sbjct: 137 QRLVFQMAKLDGYSYEEIARALGISQHTVNTHIKRA 172 >UniRef50_C3QHX8 RNA polymerase ECF-type sigma factor n=7 Tax=Bacteroides RepID=C3QHX8_9BACE Length = 184 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 10/176 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 M+ +++F LY ++ L + + S DA++I QD F + E+++ I Sbjct: 1 MNTNLKKHTTMSFSELYLIYYPKLVRFAKEFVMSEEDAENITQDVFTDLWEKRESMNHIE 60 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP---------SPEERESQLET 110 + ++L + + +D + E+ Y+E + E + + + Sbjct: 61 NMNAYLFRLVRNKCLDYLKHKVFEQKYVENVKASFEIELNLKLQSLDRFDVYDISERNQM 120 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 +L+ ++ L + R+ FLLS+++GL Y EI+ +LG+S+++V+ + A++ Sbjct: 121 EKLIRDAINSLPKRCRDIFLLSRMEGLKYREISERLGISVNTVECQMGIALKKLRA 176 >UniRef50_A6EEU5 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEU5_9SPHI Length = 196 Score = 152 bits (384), Expect = 6e-36, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 1/163 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS-F 64 F ++ + L ++ R L++ A+++ DT + V ++ P + + Sbjct: 15 KAGDESAFRKIFDLNFRKLYTFSFRLLKNKEQAEEVVHDTLMNVWMNRDRINPDFPIAPY 74 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TI +R+ ++ R+ A + ++ L L E + EE + + + ++ L L + Sbjct: 75 LYTITRRLALNALRQIATSQKAIDQLWLNMEKVSNDTEESILKEDLQRFTEAALVNLPPQ 134 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 ++ F +S+ DGL Y EIA KL +S ++VK ++ A++ + Sbjct: 135 QQQIFRMSRFDGLNYDEIAEKLNISRNTVKNHLVAALKTLRIH 177 >UniRef50_A8ICQ0 RNA polymerase sigma-70 factor n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8ICQ0_AZOC5 Length = 216 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 7/171 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE----TLS 56 +SD+ +T S ++++ +H L + RKL A D+ QD F+R + ++ + Sbjct: 37 ISDQPSTAVS-DLDAIFRLYHRELNRFAYRKLGDREAAADVVQDAFVRYLSADAQRADTA 95 Query: 57 TIRDPRSFLCTIAKRVMVDLFRRNALEKAYL--EMLALMPEGGAPSPEERESQLETLQLL 114 + PR FL I +M+D RR + + + + AP P+ E +L+ Sbjct: 96 RLDSPRFFLWRIVGNLMIDTIRRKRRQGIHATWDEITEDVVDPAPLPDRLLETREEFRLV 155 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L+ L+ R+A LL++++GLT+++IA +LGVS S V KY+ A+ C+ Sbjct: 156 KEALETLSPNCRQALLLNRVEGLTHAQIAGRLGVSPSMVSKYIMSALRRCM 206 >UniRef50_B0KMD3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMD3_PSEPG Length = 165 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 83/151 (54%), Gaps = 2/151 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 E + H G L+++L R+L++ A D+ Q+T+LR++ + + + RS L IA+ + Sbjct: 6 LELAFKAHAGELRAFLYRQLRNTDTAADLVQETYLRMLRQPPRAPVLNLRSLLFRIARNL 65 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPE--ERESQLETLQLLDSMLDGLNGKTREAFL 130 ++D R + E +A + E SPE + L L+ L L + +E FL Sbjct: 66 VIDHTRSRGTRGQHDEGMAYLYEVTGESPEPFAEVAARRELALMAEALQRLPPRCQEIFL 125 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 L +L+G+ + +A +LGVS+S+V+K +A A+ Sbjct: 126 LCRLEGMAHKAVAEQLGVSVSTVEKQLAIAL 156 >UniRef50_C7PJ73 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJ73_CHIPD Length = 196 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 1/173 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + ++ F+++Y + + L + L S A ++ Q+ F+ V T + R Sbjct: 11 LLEKMAAGDRDAFQAIYYHYAPRIYGKLLKLLHSEDLATELLQEVFIVVWQKHTVIDPNR 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 RS+L IA + +DLFR+ L L EER Q E LL +D Sbjct: 71 SFRSYLFKIADNLAIDLFRKANRSTQLLNRLLEASIDHYTHTEERLEQKENAFLLQQAVD 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L + + F L +L+G ++ E++ LG+S S+V ++ KA + ++ Sbjct: 131 ALPPQRKLVFTLCKLEGKSHDEVSLLLGISPSTVNNHIVKATRFLREYLADHP 183 >UniRef50_B7S233 RNA polymerase sigma factor, sigma-70 family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S233_9GAMM Length = 182 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 L H L+ +L RKL ++ DA ++AQ+ ++R+ E + + R+FL +A + V Sbjct: 11 DLVAEHGVPLEKYLARKLDNSEDAAELAQEAYMRLHRLEQPENLDNARAFLFQVATNLAV 70 Query: 75 DLFRRNALEKAYLEMLALMPEGGAP--------SPEERESQLETLQLLDSMLDGLNGKTR 126 D RR L +L+ G P SPE+ E L ++ ++ L K + Sbjct: 71 DQLRRRQLHFKFLKSEKSQSVDGEPMDYNAAGASPEQILDAREKLDTINRAIEELPFKVK 130 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 +AFLL + GL+YS IA ++ VS+SSV+KY+ A++H Sbjct: 131 QAFLLHRQSGLSYSAIARQMDVSVSSVEKYILHALKH 167 >UniRef50_Q13G71 Sigma-24 (FecI) n=3 Tax=Burkholderiaceae RepID=Q13G71_BURXL Length = 178 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 95/149 (63%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 + + WLKS L RK+ F A+D++ + F+++ + IR+PR+ L TI++R++ D Sbjct: 26 FRRSYDWLKSRLWRKVGCPFVAEDLSSEAFVQLAEVPDIRAIREPRALLTTISQRLVFDF 85 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 +RR LE+AYL LA PE A S +E ++ L +D L GL K ++AF+ SQLDG Sbjct: 86 WRRRDLEQAYLRELAYAPEAVACSEQETHEMVQLLIEIDRRLSGLPEKVQQAFMYSQLDG 145 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 +TY+EIA L VS+S V +Y+ KA++H + Sbjct: 146 MTYAEIASLLDVSVSMVGQYMTKALKHLM 174 >UniRef50_Q3K822 Putative RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3K822_PSEPF Length = 181 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 96/160 (60%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A ++ +L+ H+ WL + L R+ A A+DIA +TF +++ + L+ IR+PR+ Sbjct: 4 ADSSHRNHVNTLFRDHYQWLCTRLRRQSNDAATAEDIAAETFAQLLETPGLTAIREPRAL 63 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA+R++ + +RR LE+ +L L PSPEE ++L+ LD L L GK Sbjct: 64 LTTIAQRLLYERWRRGDLERRHLHQLQQGDLDHPPSPEELADLSQSLKHLDRTLQRLPGK 123 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 R FLL+++DGLTY +IA +LG+S SV +Y+ ++ C Sbjct: 124 VRSTFLLARIDGLTYPQIAAELGISQRSVSQYMTRSQALC 163 >UniRef50_A4BY85 RNA polymerase ECF-type sigma factor n=1 Tax=Polaribacter irgensii 23-P RepID=A4BY85_9FLAO Length = 204 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 ++++ + ++ L + + L + A DI Q+ F++V ++ ++T Sbjct: 9 LAEQMKLGNAKAYDFLMHSFYQKLCGYAYTLSHDHAAAQDIVQNVFVKVWSNKKNINTSF 68 Query: 60 DPRSFLCTIAKRVMVDLFRRNA----LEKAYLEMLALMPEGGAPSPEERESQLETLQLLD 115 +S+L ++ +R+N LEK YLE + L+ E + + + LQL+D Sbjct: 69 SIKSYLYKSVYNEFINQYRKNKPVFFLEKKYLESVDLVVENSDENLD------QLLQLVD 122 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + L K RE FLL++ +GLT+ EI+ L +SI +++ ++ +A + Sbjct: 123 KEIRDLPPKCREIFLLNKKEGLTHIEISEHLNISIKTIEGHMTRAFK 169 >UniRef50_D0MD44 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD44_RHOM4 Length = 173 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 1/168 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 M + F + ++ L + R LQ + +D+ Q F+R E Sbjct: 1 MPLEPAHSRYRFFRQFFLQYYAELCDFAQRFLQDPDEVEDLVQGAFVRAWEREIDWDDTE 60 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 R +L + ++ +++ LE +PSPE+ E ++ L Sbjct: 61 RARLYLYRSVRNAALNYLAHQKMKRRRLEQFHEQAARWSPSPEQAVQAAELTAAIERALA 120 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L R FLLS+ GL+Y EIA +G+S+ +V+ + +A+ + Sbjct: 121 QLPETRRTIFLLSRYHGLSYREIAEVMGISVKTVETQMGRALRFLSQY 168 >UniRef50_Q21KS5 Sigma-70, region 4 type 2 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21KS5_SACD2 Length = 168 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 7 TTASLTFESLYGTHHGWLKSW-LTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 +A+ SLY + L T+ ++ DA+DI QD F V+ ++ + TI +P+++L Sbjct: 1 MSATDKLISLYEKYRSDLGGLIATKFKKNQHDAEDIVQDAFYNVLRAKNIDTIDNPKAYL 60 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 A + ++ R+N + Y+ + +PE L++L++ +D L K Sbjct: 61 YQAASNLALNRIRKNNYHRDYIASMDDTAVD-MLTPERNVLAQHDLKMLETAMDKLPKKY 119 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + FL+S++ +Y EIA L ++ S+V+K++ K ++H E Sbjct: 120 QTTFLMSRMHSKSYKEIAADLNIAESTVEKHIIKTLKHLRSHLDE 164 >UniRef50_A6LGM3 RNA polymerase sigma factor n=2 Tax=Parabacteroides RepID=A6LGM3_PARD8 Length = 193 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 88/172 (51%), Gaps = 2/172 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPR 62 R L F+S+Y ++ + +++ L + +A+D+ Q+ F+R+ I ++ Sbjct: 10 RLQEGNMLAFQSVYESYSAHIYNFIYSLLYNRLEAEDLTQEVFVRIWEKRGSLDIDKNFD 69 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEML-ALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 S++ TIA+ ++ D + + Y++ L A E P EE + Q +DS++D L Sbjct: 70 SYIFTIARNLVYDEWDSLFHAELYMKSLEADWDERDTPKVEEDITVNSIGQYIDSLIDKL 129 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 RE FLLS+ + L+ EIA +L +S +V+ + ++++ + E G+ Sbjct: 130 PVSRREIFLLSRKEHLSTKEIAQRLSISERTVEAQIYRSLQFLRKYLAEEGI 181 >UniRef50_Q4K9E5 RNA polymerase sigma-70 factor, ECF subfamily n=8 Tax=Proteobacteria RepID=Q4K9E5_PSEF5 Length = 181 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 1/165 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + R TA + H+ L TR+L++ A+D+A DTF+RV+ S+ +T++ Sbjct: 10 LPQRPAMTAKPPRRPGFFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESDA-ATVQQ 68 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR++L A+ + VD FRR A E + + PE ++ ++ L Sbjct: 69 PRAYLHQTARNIAVDAFRREDRRGALEEQGVHLSVSPSGDPEHFMHAIQLADSIERALGE 128 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L R+ F+ +++GLT +EIA +LG+S + V+KY+ + + H Sbjct: 129 LPVNCRKVFVWQKIEGLTQAEIAERLGLSKNMVEKYMIRTLRHLR 173 >UniRef50_Q1GQ36 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sphingopyxis alaskensis RepID=Q1GQ36_SPHAL Length = 202 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 2/160 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 E++Y TH L +L RK +A D+ Q+ F R SE + +P FL Sbjct: 36 RPATGQDLETVYRTHRSSLFHFLRRKAG-PEEASDLVQEVFARAAGSEQRHQLVNPGGFL 94 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEER-ESQLETLQLLDSMLDGLNGK 124 IA+ +++D RR L L + P+ +E + L+L + +D + K Sbjct: 95 RRIAQNLLIDRARRRKSAPKALFSLREESDAVTPATQEWNLEAADLLELYEKAVDAMPPK 154 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 TR FL+ ++D L+Y EI +LG+SI++V+ ++ KA+ Sbjct: 155 TRRVFLMHRVDELSYREIHEQLGISIATVEYHMMKALGRI 194 >UniRef50_Q4KGY1 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas fluorescens RepID=Q4KGY1_PSEF5 Length = 253 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 84/154 (54%), Gaps = 7/154 (4%) Query: 21 HGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN 80 + + +L ++ +A DA D+ QD F + + + + PR+FL +A+ ++ D +RR Sbjct: 89 YADILHFLRKRTDNASDAADMTQDVFTQWLDYRDRAQVEQPRAFLFQMARNLLRDHWRRQ 148 Query: 81 ALE-KAYLEMLALMPEGGAPSPEER------ESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 + +A+ + P +E+ +L+ L+ L +L L+ + REA +L + Sbjct: 149 QVRSRAHQDGHHEQSLDNEPLADEQHEPLPAAQRLQRLEQLKEVLAQLSPRRREALMLHR 208 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +GL+ ++IA ++G+S+S V+K++A A+ HC Sbjct: 209 FEGLSQTQIAERMGISVSMVEKHIAFALLHCKQH 242 >UniRef50_Q82WW0 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WW0_NITEU Length = 199 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 4/168 (2%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 + T S T + L+ L ++L RK+ +A D+ Q+ +LR + +S+I +PR+FL Sbjct: 33 SMTTSCTNDELFLQLRNDLLNFLYRKVG-RDEAADMVQEVYLR-WRKQDVSSIENPRAFL 90 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNG 123 T+A ++ D R+ + + E A P R L L L+ L Sbjct: 91 FTVALNLIRDSSRQQIRVDKHTTEIQNFFEIGNAADDPARRYDGQRQLASLLHALNQLPE 150 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 AFLL + DG+T+++IA +LGVS +V++Y+ +A EHCL EY Sbjct: 151 PVGHAFLLFRYDGMTHAQIAKQLGVSSKTVERYIQRAGEHCLAILAEY 198 >UniRef50_C9KVM7 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KVM7_9BACE Length = 183 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 7/175 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MS++ + FE Y ++ +K++ +S DA+DIAQ+ FL++ L ++ Sbjct: 1 MSEKVEDLD-VRFERFYAANYPRVKNFAKLLTKSEEDAEDIAQNIFLKLWTRPELWQEQE 59 Query: 61 PR-SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPE-----ERESQLETLQLL 114 S+L T+ + + +LF+ +E+ Y + + G E E E L L+ Sbjct: 60 TMTSYLYTVTRNEIFNLFKHQKVEQEYEDKIMKAQLIGDLCDEDTSLLENLYYKEVLLLV 119 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 LD L K R+ F +S+ +GL++ EIA KL + + +V+ ++ K + + Sbjct: 120 KMTLDQLPPKRRQIFEMSRFEGLSHKEIAEKLQIPLRTVEDHIYKTLTELRKVLM 174 >UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Comamonadaceae RepID=A1W8K1_ACISJ Length = 222 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 3/171 (1%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDP 61 RA F L + + +L R +S DA ++AQ+TFL + Sbjct: 52 ARAQRGEVAAFSELVARYQDRIYRFLFRMTRSQEDARELAQETFLNAYQALPRWQPDAQL 111 Query: 62 RSFLCTIAKRVMVDLFRRNALEK--AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++L IA+ +DL RR E L+ P+PE + ++ L+ L Sbjct: 112 STWLFRIARNQALDLLRRAQRVAFVELDETLSEQMPADTPTPEAALQARQRIEALEGALQ 171 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L+ + RE LL ++ + Y +IA LG+S+ +VK +A+A L Sbjct: 172 RLSVEHREILLLRDIEDMAYEDIAEVLGISLGTVKSRIARARAGLLQLMPR 222 >UniRef50_Q21I31 Sigma-70, region 4 type 2 n=2 Tax=Gammaproteobacteria RepID=Q21I31_SACD2 Length = 185 Score = 149 bits (377), Expect = 5e-35, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 T +S+Y + L ++R + D +DI Q+T++RV + STI PRSF+ Sbjct: 1 MTDESNVQSIYLSIQKALSRAVSRIVP-PHDVEDIVQETYVRVCQVKQPSTITHPRSFML 59 Query: 67 TIAKRVMVDLFRR--NALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 A+ + +D +R N L + E P R + + L + L + Sbjct: 60 KTARNLALDYIKRADNKLTDSLDEDTQDNLASYKDDPYRRAAGEQDFALFCEAVRQLPVQ 119 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 R+ F+L ++ G + EIA +LG+S S+V+K++A+ ++ C F Sbjct: 120 CRKVFVLKKVYGYSQQEIAKELGISQSTVEKHIAQGLKRCANF 162 >UniRef50_Q2S0C7 RNA polymerase ECF-type sigma factor, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0C7_SALRD Length = 216 Score = 148 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 79/173 (45%), Gaps = 2/173 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + +R T FE ++ + ++ +Q A DI QDTF ++ + + T+ Sbjct: 36 LRNRLGTGDEAAFERIFRRLSEPVFRFVCGMVQDEALAHDITQDTFAKLWSIRDRMDTVD 95 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++++ +A+ + + R A+ + + ++ P+ P+P+E LL+ + Sbjct: 96 SLQAYVFQMARNRVYNHQRDEAVRRDHEQDVRDAHPDASPPAPDETLDADLLRSLLERWI 155 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + REA L + L++ EIA + VS ++V ++ +A+ EY Sbjct: 156 AELPDRQREALTLRRQKDLSHDEIAEIMDVSPNTVNNHIVRAMRTLRERLGEY 208 >UniRef50_D0KIJ0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KIJ0_PECWW Length = 173 Score = 148 bits (375), Expect = 6e-35, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 2/153 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 + Y TH GWL+ WL +K+ ADD+ DTFL+++ S IR P+++L A V Sbjct: 8 WSDFYQTHQGWLRGWLCKKMGCIHQADDLTHDTFLKLLTLADPSAIRQPKAYLMVTANHV 67 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAP-SPEERESQLETLQ-LLDSMLDGLNGKTREAFL 130 M+D FR+ LE+ L LAL+ +G S E R + + + L + L+ K + AF+ Sbjct: 68 MIDQFRKRKLEQDALSALALLVDGEEEQSAEYRVAISQLVATALHILTHELDEKVQRAFI 127 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 +++++G Y IA L VS SSVK+Y+AKA+ H Sbjct: 128 MARVEGYDYRTIAETLHVSESSVKQYLAKAMVH 160 >UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTA8_9CORY Length = 268 Score = 148 bits (375), Expect = 6e-35, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 2/165 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A T ++ L H + R + DA+D+ Q+TF+RV S + + Sbjct: 86 AGTGEMPSWADLVAEHADGVYRLAYRLSGNKQDAEDLTQETFMRVFRSLKSYKPGAFKGW 145 Query: 65 LCTIAKRVMVDLFRRNALEK--AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 L I + +D+ R + + A E G P+P+E L+ L L+ Sbjct: 146 LHRITTNLFLDMVRHRSAIRMEALNETAYDRYPGSDPTPDEAYINSNLDPTLERALFNLS 205 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 R A +L ++GL+Y EIA LGV + +V+ + + + + Sbjct: 206 PDYRVAVVLCDMEGLSYEEIAETLGVKMGTVRSRIHRGRKQLREY 250 >UniRef50_B6IXY1 RNA polymerase sigma-70 factor. ECF family protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IXY1_RHOCS Length = 170 Score = 148 bits (374), Expect = 8e-35, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 1/154 (0%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 LY H GWL WL R+ + A D+A DTF R++ + +PR FL T+A+R++V Sbjct: 12 ELYAAHGGWLCDWLRRRTRCPERASDLAHDTFCRLLERGRSALPLEPRPFLATVARRLLV 71 Query: 75 DLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 D RR +E+AYL++ A + +PE + L + +L L TR AFLL + Sbjct: 72 DDIRRREVERAYLDVCAAQAGDADLLTPERIAEATQLLAGILQLLWELPDLTRRAFLLRR 131 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L+G ++EIA LGVS +VK+++A A HC Sbjct: 132 LEGQGHAEIAAVLGVSERTVKRHIAAAYAHCYAL 165 >UniRef50_C6Y1G9 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y1G9_PEDHD Length = 195 Score = 148 bits (374), Expect = 8e-35, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 1/163 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 ++D + L F +Y + + + L++ DA D+ Q+ F + ++L++ Sbjct: 12 LTDLVRKSDELAFAEIYQRYWTIMYMHALKMLKNEEDARDVIQELFTTLWSKCQSLTSSI 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L TI + ++DL + +LE LAL E E ++ E +Q LD + Sbjct: 72 NLSGYLYTIVRNKVLDLIEQKKTRSIHLESLALYLEEHHNKTLEDLTEREMMQALDHEIG 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 L GK R F + + TY EIA L +S +VKK V+ A++ Sbjct: 132 QLPGKMRVIFQMRVKEHKTYKEIAEALEISDKTVKKQVSNAIK 174 >UniRef50_D0TF22 Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TF22_9BACE Length = 203 Score = 148 bits (374), Expect = 8e-35, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 7/177 (3%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D+ + FE + L+++ + +A+DI QD FL++ L Sbjct: 15 DKIRGGNAKAFEYAFRKFSPRLEAFAQKYTNDTNEAEDIVQDVFLKLWERRELLDNISLT 74 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLA-------LMPEGGAPSPEERESQLETLQLLD 115 SFL + + ++ + + + + L P P Q E +D Sbjct: 75 SFLFMMVRNSCLNYLKHRQIADTVQQRIPDTETAERLYAADFVPDPSSLLIQKELSDSID 134 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 +++ L K +EAF+LS+L+GL EIA + ++ V+K++ +A++ Y Sbjct: 135 QIMEELPPKCKEAFVLSRLNGLKNREIAEHMAITEKVVEKHITRALKRFRDGLRRYA 191 >UniRef50_C5SQB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SQB2_9CAUL Length = 177 Score = 148 bits (374), Expect = 9e-35, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 87/165 (52%), Gaps = 3/165 (1%) Query: 5 ATTTASLT-FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 ATT ++ F++L L + TR+ S+ DA+++ Q+ F+R++ + L + + Sbjct: 7 ATTNPTVAHFDTLVRRLRNPLMRFFTRRTGSSADAEELVQELFVRLLRRQDLLALENVDG 66 Query: 64 FLCTIAKRVMVDLFRRNALE--KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 ++ A ++ D RR+ + + ++ L APS E+ + L L LD L Sbjct: 67 YVFETAANLIRDKARRDIVRASDRHDDVTGLSLATDAPSAEDSLVSRQRLARLIKALDTL 126 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + + +L + + ++Y+EI KLG+S+S+V+K++ +A++ L Sbjct: 127 PPRAQAIVMLRRFEEMSYAEIGKKLGISVSAVEKHMVRAMDALKL 171 >UniRef50_D1PZC2 DNA-directed RNA polymerase sigma subunit RpoE n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PZC2_9BACT Length = 163 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 11 LTFESLYGTHHGWLKSWLTRKL-QSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 + + ++ T++ L + L + +A+D+ Q+ F+++ + S+ +++L Sbjct: 1 MNIDIIFKTYYRPLCIYAMHYLSGNMEEAEDVVQECFVKIWQQKADSS----KAYLYATV 56 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 + + +D RR ++ + L +ER L + +D L + R+ F Sbjct: 57 RNMCIDCLRRKQIDTVEIRPQDLEGYITDSDAQERSF---REAELWTAIDSLPERCRQIF 113 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L+S+ DG+ Y EIA +L +S +V+ ++KA++ R + G Sbjct: 114 LMSKRDGMKYHEIAEELNLSEKTVEHQISKALKQLKRHRTDLG 156 >UniRef50_A4YQ88 Putative sigma-70 factor, ECF subfamily n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YQ88_BRASO Length = 250 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 1/154 (0%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 T L ++ + LTR+L SA A ++ Q+T+L++ + I+ P+++L IA Sbjct: 8 TLRDLMLANYSVIDQQLTRRLGSADLASEVLQETYLKIESMHSTDEIKSPKAYLFRIALN 67 Query: 72 VMVDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 + D R A E+ L+ PSPE + + LL L L + R+ + Sbjct: 68 IANDHRRAQARRLTTEEVDVLLDIPDDRPSPEREIEERSDIALLRRALADLPERRRQVLM 127 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 LS+++GL + EIA ++GV++ +V+ + +AVEHC Sbjct: 128 LSRIEGLPHREIAQRMGVTVRTVESDLKQAVEHC 161 >UniRef50_C6W1C1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W1C1_DYAFD Length = 193 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 2/166 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSF 64 L F +Y + G L R L + + D+ Q+ F + T ++ + ++ Sbjct: 17 AEGDELAFAEVYRRYKGVLFLHARRILGNDEEGKDVLQELFTTLWTRRTSIDLKTNLCAY 76 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L + + D+ +E Y+ LA E G +++ + E +L++ + L K Sbjct: 77 LYASVRNRVFDIIAHRKVEARYIASLAAFIEQGEYVTDQQVQEKELRELIEQEIALLPPK 136 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 RE F LS+ + L+Y EIA +L +S +VKK V A+ H L +L+ Sbjct: 137 MREVFELSRKEELSYKEIADQLHISDKTVKKQVNNAL-HILREKLD 181 >UniRef50_C6W0L2 Transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W0L2_DYAFD Length = 195 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 1/163 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 L F LY + L ++ K+ F A +I Q+ F+ V + + +SFL TI Sbjct: 23 DELAFGELYNRYFKTLFNYAYSKVNDRFTAQEIVQELFVNVWQKRRQNQVECGQSFLFTI 82 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 AKR+++ +R+ + + + + ++ + + L L+ K +E Sbjct: 83 AKRLIISFYRKEYTRQHHYGQWEIHRSEASEPADQPTLASDLQHRYEEGLHLLSPKCQEV 142 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 F++S+ G + +I +LG+S +V++++ KA+ E+ Sbjct: 143 FVMSR-QGFSNKQIGEQLGISEKTVEQHITKALRILKAHLKEH 184 >UniRef50_C6Y1F4 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y1F4_PEDHD Length = 208 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSF 64 T +F LY L + + R ++ A +I QD F++V L P ++ Sbjct: 28 TNHDHHSFHELYNRFSVQLYANILRMVRDQDLAQEILQDVFVKVWEKRELIDPEKPFNAY 87 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L IAK + D FR+ A+EK + EE E+ QL + +D L+ + Sbjct: 88 LFRIAKNTVYDHFRKIAMEKKLETHMLSNGTETYSHIEEELIYKESSQLFLNAIDKLSPQ 147 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAK 159 ++ F L +L+G +Y E+++ L +S S+V ++ K Sbjct: 148 RKQVFTLCKLEGKSYHEVSNLLSISTSTVSDHLLK 182 >UniRef50_C6XUX4 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUX4_PEDHD Length = 201 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 1/168 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL-STIRDPRSF 64 + L FE +Y ++ + + + ++S DA +I QD F++V L + +S+ Sbjct: 19 KSGDRLAFEKIYQSYSPRIFLNILKMVKSVEDAQEILQDVFIKVWEKRGLIDPEQSFKSY 78 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L I+K + + R+ L+K L+L EE + E Q + + ++ L + Sbjct: 79 LFQISKFTVYNFIRKLNLDKKLKTYLSLENTELYTHIEEGIAYRENDQFILNAIEELPSQ 138 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 ++ + L +++G +Y+E+ +LG+S S++ ++ KA + +G Sbjct: 139 RKQIYKLCKIEGKSYAEVGKQLGISSSTINDHIVKATKFLKQRHASFG 186 >UniRef50_C6XVT4 RNA polymerase sigma-70 factor n=3 Tax=Pedobacter RepID=C6XVT4_PEDHD Length = 196 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 81/174 (46%), Gaps = 1/174 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 + R F ++ + ++ + + +S A +I QD FL++ E + ++ Sbjct: 12 LLARIAMGDQRAFTEIFDFYQRYVYDYGRKLTKSEDQASEIVQDVFLKIWLNREKFNEVK 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + ++L + + +++ R+ A + L + S ++ E+ ++L ++ Sbjct: 72 NFGAYLNRVVRNHSINVIRKLAQDARSATQLKINTLESDNSTDKILDYNESNRILTQAVE 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L+ + R A+ L + GL Y E+A K+ VS +V+ ++ +A++H ++ L Sbjct: 132 NLSPQQRTAYTLCHIQGLKYEEVAKKMNVSSRTVQAHMRQALKHIREHFSKHAL 185 >UniRef50_C1DNR4 ECF sigma factor, FecI family n=14 Tax=Pseudomonadaceae RepID=C1DNR4_AZOVD Length = 194 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 1/157 (0%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCT 67 F ++ +++ ++R++ A D+ QD FLR + + +P ++L Sbjct: 19 GEEQDFLRVFLAQRERMEALVSRRVGCRATAADLIQDLFLRFW-KRPMRQLDEPGTYLLR 77 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 A+ + +D R L+ L +G S E + L+L+++ L GL +TR Sbjct: 78 SARNLAIDHLRGEGKRNRSLDSLGPEHDGATASLETALQAGDELRLVEAALRGLPERTRH 137 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 FLL+++ G TY EIA +G+S S+V+K++ +A++ C Sbjct: 138 IFLLNRIHGRTYGEIARAMGLSQSAVEKHMMRALDTC 174 >UniRef50_D2QFM1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QFM1_9SPHI Length = 213 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 1/167 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSF 64 + FES++ ++ L + + + +A++ Q FL V I +++ Sbjct: 27 SNGNERAFESVFRQYYAPLCRYARQLVPDPDEAEEEVQAMFLTVWEKRENLNITISLKAY 86 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L ++ + ++ + E + E SP + E L + L + Sbjct: 87 LYRAVHNRCLNRIKHISVRDEHREHSRYLGESLVESPMQTLLGDELSDRLQRTIQKLPEQ 146 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R AF LS+ D L Y EIA +LG+SI +V+ + KA+ EY Sbjct: 147 CRLAFTLSRFDELKYGEIADQLGISIKTVENQIGKALRILRTELSEY 193 >UniRef50_Q8EN30 RNA polymerase ECF-type sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN30_OCEIH Length = 187 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 2/163 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD--P 61 R E LY + L S+ R + A++ QD F ++ + Sbjct: 11 RIQEKDEEALEQLYDRYEKLLFSFSLRMTNNETIAEEAVQDVFTKLWTKKLPYKKEKGKF 70 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 S+L TI + +DL R+ + + + E P+PEE E Q + S + L Sbjct: 71 SSWLLTITRNACLDLIRKTKTDNVEFQERDSLKEDNEPTPEEHVEWNEKRQQIKSAMQSL 130 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 N + +E L GL+ S+I+ + + +VK V A+ H Sbjct: 131 NDEQKEIIELFYFKGLSQSKISEACNIPLGTVKGRVRLALNHL 173 >UniRef50_A6GRF7 Sigma factor, ECF subfamily protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GRF7_9BURK Length = 167 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLR-VMVSETLSTIRDPRSFLCTIAKRVMV 74 ++ H+ LK +L +L+ A D AQ+ F R V + + + DPR+ L IA ++ Sbjct: 1 MFEKHYRELKHFLLNRLRDHDLAADAAQECFSRAVAMQREGAAVLDPRALLFKIANNWLI 60 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPS------PEERESQLETLQLLDSMLDGLNGKTREA 128 D R+++ L + G P+ PE+ S + L L ++++ L + REA Sbjct: 61 DEHRKHSNRPELLSLEEEQENGYFPTAAQPIHPEQIASANQQLDKLLAIINDLPPRCREA 120 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 F+L + DGL+Y EIA ++ +S +V+ + A+ C+ LEYG Sbjct: 121 FILFKFDGLSYQEIAQRMDISPRTVEMQLRIAMAACIKG-LEYG 163 >UniRef50_Q4K5N5 RNA polymerase sigma-70 factor, ECF subfamily n=9 Tax=Pseudomonas RepID=Q4K5N5_PSEF5 Length = 170 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 4/159 (2%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAK 70 + + L+ H L+ +L RK++ A D+ Q++FLR+ I + + +L A Sbjct: 1 MDLKGLFLKHAAALRGYLARKIRDPQLAADLVQESFLRLAEHTRGERIDNSQGYLYRTAN 60 Query: 71 RVMVDLFR---RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +++D R R E E+LA + E A E + + + L + L +T+E Sbjct: 61 NLLIDHVRQEARRKTETVPHEVLADI-EDEAAGLEAQAMAQQQRKALKQAIMELPPRTQE 119 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 F L++++G+T++E+A L +S SSV+K++++A+ + + Sbjct: 120 IFRLNRIEGMTHAEVARHLNISDSSVQKHLSRALAYVMQ 158 >UniRef50_Q1IAL3 Putative RNA polymerase sigma-70 factor n=1 Tax=Pseudomonas entomophila L48 RepID=Q1IAL3_PSEE4 Length = 175 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 66/165 (40%), Positives = 92/165 (55%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 D+ + E LY HHGWL + L RKL +A DA D+A D L ++ + +D R Sbjct: 2 DKGSFALRQQLEQLYVDHHGWLCNLLRRKLGNACDAADLAHDICLILLNKGCVPAAQDCR 61 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 L IA ++DL+RR LE YL+ L E APS E R LE L +D+ L + Sbjct: 62 RHLAQIANGKVIDLYRRRQLEARYLDELMQRDEALAPSEEIRALALEALVEVDAALQRQS 121 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +R A LL +L+G+ + EIA +L VS+SSV+KY+A A+ C F Sbjct: 122 ANSRRALLLHKLNGMAHREIATELKVSVSSVEKYIASALRSCSPF 166 >UniRef50_C6XYS8 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XYS8_PEDHD Length = 200 Score = 145 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 1/156 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSF 64 FE +Y + L + L+S A D QD F+++ +++ + +++ Sbjct: 17 KKGEVAAFEEIYKRYKQRLAVNFLKLLRSEELAQDALQDLFIKIWTLRKSIDPDKSFQAY 76 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L IA+ ++ D +R+ A +K + L E EE + + + L+ ++ L + Sbjct: 77 LFKIAQNIVFDFYRKAARDKKMQLQMLLENEDFYSHIEENLASKDNISLVHELIAQLPPQ 136 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 ++ F + +L+ +Y EI+ LG+S S++ K+V +A Sbjct: 137 QQKVFTMFKLEEKSYKEISILLGISPSTINKHVHQA 172 >UniRef50_A3PQS7 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Alphaproteobacteria RepID=A3PQS7_RHOS1 Length = 173 Score = 145 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 1/146 (0%) Query: 21 HGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN 80 + L LTR+ + DA D+ QD +LR+ + + + P +++ + + + +D R Sbjct: 18 YDRLSRHLTRRPGTLCDAQDVMQDAWLRLAKVQDVEEMSSPAAYVGQVVRNLAIDRLRAQ 77 Query: 81 ALEKAYLEMLALMPEGGA-PSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTY 139 + + + + + PS E + L L+ ++ L + R+ FLL + DGL++ Sbjct: 78 RVRERHFSAAEVHDQPADLPSAERIVDFRQRLARLEEIVAELPPRQRQVFLLHKFDGLSH 137 Query: 140 SEIAHKLGVSISSVKKYVAKAVEHCL 165 SEIA +LG+S S+V+K + KA+ C Sbjct: 138 SEIAARLGISRSAVEKLIMKALAQCR 163 >UniRef50_B8KN82 Sigma-70, region 4 type 2 n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KN82_9GAMM Length = 196 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 R + Y + L+ +L+R L D +D++Q+ +LR +E +R P++ Sbjct: 3 RRAEHHRSPVDEAYVANADHLRRFLSRFLFDFRDIEDLSQEVYLRASKAEKNGPVRSPKA 62 Query: 64 FLCTIAKRVMVDLF-RRNALEKAYLEMLALMPEGGAPSP-EERESQLETLQLLDSMLDGL 121 FL +A+ + ++ R++ ++E + + + +P +E++ + L L Sbjct: 63 FLFRVARNLALNELSRKSRRLTDFIEDVTVGGDVASPHTLDEQQHGEQRFALFCRAASRL 122 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + R AFL+ ++ G ++ EIA +LGVS S+V+K++A + C F Sbjct: 123 PAQCRRAFLMRKVYGYSHREIAEQLGVSTSTVEKHIATGLYRCNQF 168 >UniRef50_C6XY37 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter RepID=C6XY37_PEDHD Length = 193 Score = 145 bits (367), Expect = 5e-34, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 2/154 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSF 64 + F+ L+ H L +++ + +S A++I D F+++ S E L+ IR+ +F Sbjct: 13 SKGDEEAFKCLFRKHRDKLFAYIFKITKSRETAEEIVMDVFMKIWESGEVLTEIRNFPAF 72 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEML-ALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 L IA+ +D R A ++ +E+L + A P+++ E +D + L+ Sbjct: 73 LFHIARNKSLDFLRMAAKDRVLVELLWDQINTPAADQPDDQLLLNELKSNIDKAVAQLSP 132 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYV 157 + + F LS+ +TY +IA L +S S+VK ++ Sbjct: 133 QRKSVFRLSREQHMTYDQIASHLQLSKSTVKNHM 166 >UniRef50_C2BYK0 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601 RepID=C2BYK0_LISGR Length = 185 Score = 145 bits (367), Expect = 5e-34, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 2/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + ++ E+LY +H + S+ R +++ A++I Q+ F+++ + L Sbjct: 8 LYEQVEDGQREALEALYDKYHKLIFSFAYRMVKNKELAEEIVQEVFIKIWTKKGLYQAEK 67 Query: 61 --PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 S+L TI + + +DL R+ L+ G P PE+ E ++ L Sbjct: 68 GKFSSWLLTITRNLSIDLIRKQKEVPYELQEEREKVPDGQPLPEDLTIWKEKRAEINQAL 127 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L ++ L T +IA KL + + +VK + A++H +E Sbjct: 128 AELKENQQQIIQLFYFQSCTQVQIATKLDIPLGTVKGRLRLALKHLKDIMVE 179 >UniRef50_A5FKM6 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FKM6_FLAJ1 Length = 187 Score = 145 bits (367), Expect = 5e-34, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 81/168 (48%), Gaps = 1/168 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + + F L+ ++ + + L+S A++ QD F++V E L+ + Sbjct: 12 LVSELKNGSEKAFRFLFDLYYQDIYGYSISLLKSREAAEENVQDVFMKVWQHRENLNLEQ 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++++ TIA+ ++ + A + A E + + + + + +L + Sbjct: 72 SFKAYIFTIARNQAFNILNKAANDLALKEAVFYESQKSHEYGDYAIREEDCKKLRKQAIK 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L K ++ F +S+ G++Y EI+ +LG+SI++V+ ++KA+E +F Sbjct: 132 QLPPKRKQIFKMSRKKGMSYEEISQELGISINTVRNQMSKALESMRVF 179 >UniRef50_A5FID8 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FID8_FLAJ1 Length = 203 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 10/166 (6%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + + + + L T+H L + +++ + A+DI Q+ F++V T L Sbjct: 12 LIESLKNGDEMAYTYLIDTYHHKLCVYANSLVKNVYSAEDIVQNVFIKVWEQRTRLKPEH 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNA----LEKAYLEMLALMPEGGAPSPEERESQLETLQLLD 115 +SFL + +DL+R+N LEK+Y + L G E+ E+ L ++ Sbjct: 72 SLKSFLYKMTYNEFIDLYRKNQSLFSLEKSYYDAL-----NGIVQEEDSEAFQRVLNAVN 126 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 + L K +E F+LS+ +GLT EIA L VSI +V+ + KA Sbjct: 127 KEIQNLPPKCKEVFILSKKEGLTNIEIAEHLDVSIKTVEAQITKAF 172 >UniRef50_A7M626 RNA polymerase sigma factor n=5 Tax=Bacteroides RepID=A7M626_BACOV Length = 198 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 2/163 (1%) Query: 12 TFESLYGTHHGWLKSWLTRKL-QSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIA 69 FE LY + G L +++ R + + A+++ Q TF+R+ E + SFLCTIA Sbjct: 21 AFERLYNMYSGKLYNFIMRLSSGNQYMAEEVVQATFIRIWEVHEKVDPASSFISFLCTIA 80 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 K +++++++R +E Y E L EE + +DS+ + L + ++ F Sbjct: 81 KNLLMNMYQRQTVEYVYNEYLMKSSVDRDSQTEENIDLRFLNEYIDSLAEELPAQRKKIF 140 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 +LS+ T EIA +G+S S+V ++ AV+ +++ Sbjct: 141 ILSKRQNYTNKEIAEIMGISESTVATQLSLAVKFMREQLMKHY 183 >UniRef50_UPI0001BC8451 putative RNA polymerase sigma factor n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC8451 Length = 187 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCTIAKR 71 FE + +K++ + L+S DA+DIAQD F+++ + + ++ S++ T+A+ Sbjct: 21 FEQFFILTFPKVKAFAWKILRSEEDAEDIAQDIFVKLWDNPEIWENKETWDSYIYTMARN 80 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPE----ERESQLETLQLLDSMLDGLNGKTRE 127 + + + ++E +Y E L + +PS E ++ E L+ LD + + R+ Sbjct: 81 QIYNFLKHQSVELSYQEKLV---QEDSPSFEFDIYDKLYAKELQLLIKLTLDNMPEQRRK 137 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 F +S+ +G++ EIA L +SI +V++++ A++ Sbjct: 138 VFSMSRKNGMSNQEIADNLQLSIRTVERHIYLALQEL 174 >UniRef50_C6XT34 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT34_PEDHD Length = 201 Score = 144 bits (365), Expect = 9e-34, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 1/162 (0%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFL 65 F LY + L + L+S A+++ Q F+++ + +L + +++L Sbjct: 22 KGDKGAFGELYHRYKRKLYYNFRKLLKSESQAEELLQQLFVKIWENRLSLDPDKVFKAYL 81 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 IA+ ++ D FR+ + +K +L + EE E L++ + L + Sbjct: 82 FRIAENLVYDFFRKASRDKNMGAILMTVATENYSHIEEAIYSKEREALINRAVASLPPQR 141 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 R F L +L+G TY E++ +LG+S S++ ++ KA + Sbjct: 142 RHVFTLCKLEGKTYEEVSVELGISTSTINDHIVKATRSVREY 183 >UniRef50_A3WYG2 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYG2_9BRAD Length = 166 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 2/166 (1%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 ++ F LY G L+ ++R + A DI D FLR+ + + + ++L Sbjct: 2 KDSAAQFVELYLAESGRLQRRISRIVGCRTTASDIVHDIFLRLWKRKQ-DGMNEASAYLS 60 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPS-PEERESQLETLQLLDSMLDGLNGKT 125 A+ +D R + Y+E PS P + + + L+ +D ++ L ++ Sbjct: 61 QSARNAAIDHLRSERIRAQYIERTVPEQRFVMPSSPHDIVAARDHLRYIDDVIRALPERS 120 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R FLL+++ G Y EIA LG+S +V+K++ +A++ ++ Sbjct: 121 RHIFLLNRIHGRNYGEIARTLGISTGAVEKHMIRALKAIRAGAEDF 166 >UniRef50_D1VYX9 RNA polymerase sigma-70 factor n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VYX9_9BACT Length = 191 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 5/162 (3%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSF 64 + F+ L+ ++ + ++ A+DI QD F+++ ++ T I++ ++ Sbjct: 20 SIGDEKAFDELFVKYYPKVLQFVMHFNHDKSVAEDIVQDLFMQLWINRTHFLGIKNIDNY 79 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGA-PSPEERESQLETLQLLDSMLDGLNG 123 L A+ R Y E ++PE +PE R E +LL + + Sbjct: 80 LFVSARNAA---LRCLKDSFTYNENARIIPESNDMENPEVRLCYEEFYKLLMQEVQKMPE 136 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + R+ FL+S++DG++ +EIA KLG+S +V+K+++ + + Sbjct: 137 QRRKVFLMSRVDGMSNAEIAEKLGISKRTVEKHISLGIAYLR 178 >UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacteria RepID=A7HRP1_PARL1 Length = 218 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL--STI 58 + L H + + R L S DA+D+AQ+ FLRV + Sbjct: 35 LVAAVALGDEAACRELMNRHLPRITALGRRMLGSQADAEDVAQEVFLRVWTNAGKWEPGR 94 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L +A + +D R+N ++ + P P P+ R Q E + +++ L Sbjct: 95 AQFSTWLHRVATNLCLDRLRKNRGGTEDIDAIPE-PASEEPGPDRRLEQSELAERVEAAL 153 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L + R A +LS GLT E A LG+++ +V+ +++A Sbjct: 154 QALPERQRAAIVLSHYQGLTNIEAAEILGITVEAVESLLSRARRQLR 200 >UniRef50_A6E6E9 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6E9_9SPHI Length = 204 Score = 143 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 88/172 (51%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + ++ + LY + L ++ R +S F A+D+ DTF+++ E L + Sbjct: 12 LLEQLKSGDQRALSELYHRYSNRLTYYVQRTSKSPFLAEDVVHDTFIKIWQSREQLDPSK 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 S+L IAKR +++L +R E + L + S E+ + E+ +L+++ ++ Sbjct: 72 PFESYLFVIAKRTLLNLLKRARHETSILAEIKKYAIIEDESTEKFLAYQESNRLINAAIE 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L+G+ ++ F+ ++ ++Y + A L ++ S+V K+++KA++ + + Sbjct: 132 TLSGQVKKTFIYCRVQDMSYKQAAEALNITESTVNKHMSKALQTIREYVRAH 183 >UniRef50_C6Y2W3 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y2W3_PEDHD Length = 197 Score = 143 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 1/162 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSF 64 F +LY + L K S A+++ Q++F+++ ++ T +++ Sbjct: 17 KEGDEQAFSNLYKMYVMPLMRLAVSKTNSREIAEELVQNSFVKLYEHKRSIETNTSIQAY 76 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L I K +++ +R + Y +A S E+ E L++ ++ L K Sbjct: 77 LFVILKNQILNHYRSQLVRNKYELHIAKHANAEDHSLIEQIESRELAALINMEIEKLPPK 136 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 RE F+LS+ L+ EIA KL +S ++V++++ KA+ + Sbjct: 137 CREVFILSRKGFLSNKEIAAKLDISENTVEQHIRKAISKLRM 178 >UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily n=9 Tax=Actinomycetales RepID=A8L2E7_FRASN Length = 305 Score = 143 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 1/162 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 ++E + H + R +A DA+D+ QD F+RV S T +L I Sbjct: 51 PPSWEDVVREHGNRVYRLAYRLTGNAHDAEDLTQDVFVRVFRSLADYTPGTFEGWLHRIT 110 Query: 70 KRVMVDLFRR-NALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 + +D RR + L G SPE ++ +++ L L R A Sbjct: 111 TNLFLDRMRRQQKIRFDALPEDTERLAGREASPEAVYAESHLDADVEAALAALPPDFRAA 170 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +L ++ L+Y EIA LGV + +V+ +++ + Sbjct: 171 VVLCDIEQLSYEEIAQTLGVKLGTVRSRISRGRAMLRAALAD 212 >UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S9_HALOH Length = 195 Score = 143 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 10/160 (6%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKR 71 F L + + + R L ++ DA D+ Q+ F++ + + ++L TI Sbjct: 21 FARLVEKYQRKVYNTTYRMLGNSEDASDLTQEAFIKTFRNLKRFRGKASFSTWLFTITTN 80 Query: 72 VMVDLFRRNALE---------KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 + D R+ + ++ + + PE+ ET+ + ++ L Sbjct: 81 LCRDELRKRQRRSASPHFPDGQHFMSEDIENIKDNSKVPEDLYMGRETMASIQRAINKLP 140 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 +E +L + G +Y EI+ +GV + +VK +++A + Sbjct: 141 ADQKEVIVLRDIQGFSYKEISEIIGVPMGTVKSRLSRARK 180 >UniRef50_A5FAI1 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FAI1_FLAJ1 Length = 182 Score = 143 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 1/164 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD-PRSFLCT 67 FE ++ T+ L ++ ++ A++I Q+ F R+ + I D +S+L Sbjct: 5 NEAAFEKVFKTYFKSLHAFAYTFMKDEIIAEEIVQNVFFRIWEKKEQLQIDDSLKSYLYR 64 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 ++ + ++ ++ + E + E + ++ L + R Sbjct: 65 SVHNESLNHIKHLKVKTSFQLEYSGNMEPSNQDASNQMIAAELETEIQKAINELPQQCRI 124 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 F +S+ + L Y +IA +L +SI +V+ + KA++ L +EY Sbjct: 125 IFQMSRFEQLKYQQIADQLNISIKTVENQMGKALKVMRLKLIEY 168 >UniRef50_C6IQT2 RNA polymerase sigma factor n=3 Tax=Bacteroides RepID=C6IQT2_9BACE Length = 195 Score = 143 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 2/174 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKL-QSAFDADDIAQDTFLRVMV-SETLSTI 58 + + FE LY + G L +++ R + + A+++ Q F+RV E + Sbjct: 10 LLTELKNGSFQAFERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWEVRERVEPE 69 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 SFLCTIAK +++++++R +E Y E L EE + +DS+ Sbjct: 70 SSFISFLCTIAKNLLMNMYQRQTVEYVYNEYLKNTGVDRDSQTEESIDLRFLNEYIDSLA 129 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + L + ++ F+LS+ T EIA +G+S S+V ++ AV+ +++ Sbjct: 130 EELPAQRKKIFILSKRQNYTNKEIAEMMGISESTVATQLSLAVKFMREQLMKHY 183 >UniRef50_A7LZK7 Putative uncharacterized protein n=5 Tax=Bacteroidales RepID=A7LZK7_BACOV Length = 206 Score = 143 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 + FE L+ +++ L+ + R ++ DI Q+ FLR + ++ S L Sbjct: 15 KRGNNAAFEFLFKSYYPRLRGYAIRFIEDEETVRDIIQECFLRFWERREMLSVFSLTSLL 74 Query: 66 CTIAKRVMVDLFRRNA-LEKAYLEMLALMP-------EGGAPSPEERESQLETLQLLDSM 117 ++ + ++ + + +EK +E LA + E + E + + + Sbjct: 75 FSMVRNGCLNYLKHRSIVEKYRVEYLAKVDGEERLYYADFMQDAEHKLLYKELQEQIALV 134 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH 163 L+ L ++RE FLLS+ GL EIA KL +S ++V+K++A+A+++ Sbjct: 135 LNQLPDRSREIFLLSRFRGLKNREIAEKLQISTTAVEKHIARALQY 180 >UniRef50_Q47F03 Sigma-70 region 2 n=1 Tax=Dechloromonas aromatica RCB RepID=Q47F03_DECAR Length = 165 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 4/155 (2%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 S +LY H G L+ +L R+L A ++A +TF+R +V+ + + + R+FL IA Sbjct: 2 SSAITTLYIEHIGELRRFLVRRLACIEVAAELAHETFVRYLVAVPTAPVANQRAFLFRIA 61 Query: 70 KRVMVDLFRRNAL---EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 + +D R + L + LE + +P P PE + L L +D L K R Sbjct: 62 GNLAIDYLRSHRLSTPQTVDLESCSDLP-SDEPGPERYAIARQQLDCLRRAIDELPAKCR 120 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 E F+ + DG++ +A + GV++++++K++ +A+ Sbjct: 121 EVFVRHKFDGISQKALASEYGVTVNAIEKHLVRAL 155 >UniRef50_C9KS81 RNA polymerase sigma factor n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KS81_9BACE Length = 198 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAK 70 F LY + L ++ +S DA+DI Q+TFLR+ E LS +S+L TIA Sbjct: 22 DFTRLYFMYADLLYGFVLNLTKSPDDAEDILQETFLRIWQTKENLSLETSFKSYLYTIAH 81 Query: 71 RVMVDLFRRN---ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +++D FR+ + Y++ A + E E L L+ L+ + Sbjct: 82 NLIIDSFRKKIDSVAFEVYIQSDAYQNYTENNTENEVYFD-EFLDKLNEAKKKLSSRQLV 140 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 F LS+ G + +IA K+GVS +VK + A++ Sbjct: 141 IFELSREKGCSIKDIAEKMGVSEKTVKNQLTLALK 175 >UniRef50_A4VQR4 PpiC-type peptidyl-prolyl cis-trans isomerase n=4 Tax=Gammaproteobacteria RepID=A4VQR4_PSEU5 Length = 392 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 75/146 (51%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y H L + LTR A+D+AQD +L++ ++ +P+++L IA ++ D Sbjct: 15 YVHHRQRLVAHLTRLGGCRALAEDLAQDAWLKLAQVMPEQSLDNPKAYLFRIATNLLRDA 74 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 R AL A E + E P L+ + LD L + R+ F L++L+G Sbjct: 75 LRHRALVGAGDEAPLELIEAVQADPCGLVEHQCALRCVLRQLDDLPPRCRQVFELARLEG 134 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVE 162 L+ +EIA +LG+S+++V +AKA + Sbjct: 135 LSQAEIAERLGISVNTVIAQLAKARQ 160 >UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RAI8_AMMDK Length = 215 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 10/174 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + ++A + FE L + + R + DA+D+AQ+ F+R + Sbjct: 7 LLEQARAGSHQAFEELVLAYQDRVYGLCYRLTGNHDDAEDLAQEVFVRAYRGLRSFRAEA 66 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP---------SPEERESQLET 110 D ++L IA + ++ R+ L+ +P+G P PEE + E Sbjct: 67 DFGTYLHRIAVNLFLNHRRKANHNTLSLDDPVSVPDGELPRQVADGNHLHPEEEAEKREF 126 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 ++L+ L+ L+ + R +L +++ ++Y EIA LGV+ +VK + +A Sbjct: 127 IRLVRRALNSLSREHRAVLVLREMEEMSYEEIAAVLGVAPGTVKSRLNRARAAL 180 >UniRef50_C3QRM6 RNA polymerase ECF-type sigma factor n=10 Tax=Bacteroides RepID=C3QRM6_9BACE Length = 183 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 2/164 (1%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDP 61 DR + F + L ++ + A+++ D F V + TL I + Sbjct: 9 DRIINSDEAAFCRFMERYSSRLYHYVFALIGQKEPAEEVVSDVFYEVWKNRKTLGGIENM 68 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 +++ TI R + R+ + L+ + SP+E E ++ +++ + Sbjct: 69 NAWIQTITYRKAISYLRKETGKTELSLDGIGDFIFAPIQSPDEAMISKEEMEKINNAIQQ 128 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L K + F L++++GL Y EIA L +S+ ++ ++A A+E Sbjct: 129 LPPKCKHVFFLAKIEGLPYKEIADILNISVKTINNHIAFALEEI 172 >UniRef50_C3QAU5 RNA polymerase ECF-type sigma factor n=4 Tax=Bacteroides RepID=C3QAU5_9BACE Length = 181 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 5/161 (3%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 T F + Y T++ L +L +DI Q+ FL++ ++ I +++L Sbjct: 8 TMDIQAFRNYYDTYYEQLCCFLNFYTHDVAVIEDIIQEVFLKLWENKDCIEITYIKTYLF 67 Query: 67 TIAKRVMVDLFRRNALEKAYLEML--ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 AK +++ R LE + E + ++ ++++ ++ L + Sbjct: 68 RAAKNRVLNYLRDEENRHQLLENWFNQQLEERKYKDCFDIDA---LTKVVNRAIEQLPER 124 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 RE F LS+ +GL+Y +IA +LG+S+ +V+ ++ A++ Sbjct: 125 CREIFSLSRKEGLSYRQIAERLGISVKTVETQISIALKRIR 165 >UniRef50_B0NPF8 Putative uncharacterized protein n=4 Tax=Bacteroides RepID=B0NPF8_BACSE Length = 171 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST--IRDPRSFLCT 67 ++ + + H+ L ++ + A+DI QD+F + ++S I + R++L T Sbjct: 5 TIDIDETFKYHYRSLCLYVLHYVHDTDIAEDIVQDSFSALWEKLSISGAKIENVRAYLYT 64 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 A+ +D ++ E+ Y L+ S EE E + + + +D L + RE Sbjct: 65 TARNRSLDYLKK---EEIYDPNLSPSDFEDTLSDEEAEKRSVREAQMWTAIDALPERCRE 121 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 FLL++ DG+ Y EIA K +S+++V +++KA+ Sbjct: 122 IFLLNKRDGMKYREIAAKFQISVNTVDNHISKALR 156 >UniRef50_Q2S652 Possible sigma-70 factor, ECF subfamily, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S652_SALRD Length = 194 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 6/167 (3%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPR 62 R + + +L+ + + ++ SA A D+AQDTF+R+ E+LS + Sbjct: 13 RLKASDREAYAALFDAMYEPVFRYVRSITSSAEAAQDVAQDTFIRLWEARESLSPSQSLE 72 Query: 63 SFLCTIAKRVMVDLFR----RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L IA+ + R R+ E A + A P A P+++ + L + Sbjct: 73 AYLYRIARNRAYNHERNRRTRDEKEPAVRDKTAAQPASPA-RPDDQADADQLEDRLWQWI 131 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L G+ REA +L++ +GL++ E A +G+S +V ++ +A++H Sbjct: 132 GELTGRQREALVLTRFEGLSHEEAADVMGISPRTVNNHIVRALKHLR 178 >UniRef50_C5PUA0 RNA polymerase ECF family sigma factor n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PUA0_9SPHI Length = 194 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 1/165 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPR 62 + F +LY + L + + L+ +D+ QDTFL++ T + + R Sbjct: 9 KVKNGDIDAFNALYTLYAPLLYNKCLKLLKDYEILNDLVQDTFLKIWHLRTEIDPEKGFR 68 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +F+ IA+ +++D+FRR + +K E L + + E +L+ + L+ Sbjct: 69 TFIFRIAENMVMDIFRRISRDKKLQEELWYNLVENSFHFNDHVIDKEKKMILEQAISQLS 128 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + +E ++L +++ +Y E+A +LG+S+SSV + A++ + Sbjct: 129 PRKKEIWILCKVNEKSYKEVAQQLGISVSSVSNQLVTAMKDIKDY 173 >UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QW1_RHOFD Length = 187 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 1/168 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPR 62 RA F L H + +L R L S DA ++ Q+ F++ + R Sbjct: 17 RARAGDRKAFSELVRRHQKPVHRYLLRMLGSHDDAMELTQEAFIKAWQALPQWRPEAQFR 76 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 ++L IA +D R L + + G P P + + ++ LD+ L L Sbjct: 77 TWLFRIANNTALDALRHRKLIEFVPLEDSFDAPGSEPDPAHQAQVTQEVRQLDTSLKKLM 136 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + R+ LL +++ ++Y EI L ++ +VK +A+A + R Sbjct: 137 PEHRQILLLREVEEMSYEEIGSVLSLNEGTVKSRLARARAALIEIRAR 184 >UniRef50_C2FYM2 RNA polymerase ECF family sigma factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2FYM2_9SPHI Length = 197 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLC 66 ++ FE +Y + + L L+ AD+I Q F+++ + ET+ + +++ Sbjct: 17 GSAQAFEHIYKRYSKIIYKRLLFLLKDPETADEILQSLFIKIWDMRETIDADKPFSAYIL 76 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 +A + +D+FR+ +K + L + SP+E E L +L+ ++ + + + Sbjct: 77 RMADHMAIDVFRKLTRDKKLQKELWDNFMEYSTSPDEDYIYKENLNILEQAIEQMPPQRK 136 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 F L +++G +Y E++ +L +S S++ + A++ + +E+ Sbjct: 137 LIFRLCKIEGRSYKEVSEELNISYSTISNQLVIAMKFLKKYAIEH 181 >UniRef50_B3PGM9 PsbS n=2 Tax=Pseudomonadaceae RepID=B3PGM9_CELJU Length = 206 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 7/171 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-----TL 55 M D + T + +Y + L + + A+D+ QD F R+ + + Sbjct: 32 MLDASIHTPPAPWVQIYTENLSTLLRFAYKLTGCNHQAEDMVQDAFFRLTSAPPVTSTRI 91 Query: 56 STIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQL 113 S+ +D ++L I + + +D +R+ L ++ + A + SP++ L+ Sbjct: 92 SSSKDQLNYLFQIIRNLAIDHYRKQVLINKHIAIDAEEDDINPYEISPQKIYEDQRLLEQ 151 Query: 114 LDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L ++L L +TR AF ++ G+ EIA +LGVS + V + A+ HC Sbjct: 152 LSTLLSELPDRTRYAFERHRIFGIPQKEIAEELGVSPTLVNFMIRDALIHC 202 >UniRef50_C9KS29 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KS29_9BACE Length = 238 Score = 142 bits (359), Expect = 4e-33, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 6/156 (3%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR--SFLCTIA 69 F+S + + +K++ + L+S DA+D+AQD F ++ L + + ++ Sbjct: 55 DFQSFFTVNFPKVKNFARKLLKSDEDAEDVAQDVFCKLWQQPELWQHPNDKLDGYIFVTT 114 Query: 70 KRVMVDLFRRNALEKAY----LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 + +++++F+ +E+ Y +E L + E L +L L + + Sbjct: 115 RNIILNMFKHQRIEQEYQVSFIENAILCEIIEDDQALKDIYYKELLMILRLALTKMPERR 174 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 R F S+ GL+ +IA KLGVSI +V+ + A+ Sbjct: 175 RMIFEASRFQGLSNKDIAEKLGVSIRTVEHQIYLAL 210 >UniRef50_C6VZZ8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VZZ8_DYAFD Length = 203 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 76/174 (43%), Gaps = 5/174 (2%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRS 63 T F L+ H+ L ++ R + + A+++ D F+++ + + ++ Sbjct: 28 VTNGDYNAFRELFTRHYRSLCNYAMRVVVTREIAEEVVSDVFVKLWKNREQIEVHTSFQA 87 Query: 64 FLCTIAKRVMVDLFR---RNALEKAYLEMLAL-MPEGGAPSPEERESQLETLQLLDSMLD 119 ++ + +D + E+ L+ + M SP E S E ++ + Sbjct: 88 YIYRAVRNQALDYLKLRIHRQNERDSLDSVQWNMSHADHFSPAEELSYNEFYSHIEDCIQ 147 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L + + F LS+ +GL Y +IA +L +S+ +V+ +++A++ E+ L Sbjct: 148 ALPRQCQLIFRLSREEGLRYRDIAERLEISVKTVETQMSRALKVLRERVPEHRL 201 >UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F885_ACIC5 Length = 236 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 13/180 (7%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR-DP 61 R S + L THH + + R S+ DA+D+ QD FL+V + + T R Sbjct: 51 RCMDGDSGAWTELVQTHHRRVYALCYRFTGSSSDAEDLTQDVFLKVYGNLRSFDTERGSF 110 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGA-----------PSPEERESQLET 110 ++++ T+ + ++VD FRR+ ++A M E P P +R Q + Sbjct: 111 QTWITTLTRNLLVDHFRRSKQQRATSSMDEGWDEADDLPLTQRLAQPGPDPHDRAVQRQL 170 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +L+ L ++ + REA +L L L Y EIA L V +VK +++ Sbjct: 171 EKLVQEALVKISPELREAVILRDLQDLDYKEIAQILRVPEGTVKSRISRGRAELARVLER 230 >UniRef50_C4KZA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KZA8_EXISA Length = 186 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 2/167 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + +R E LY + L +++ + + A++ Q+ F+++ + Sbjct: 6 LYERVRQKDKEALEILYDRYERILYAFVLQLTKDRDLAEEAMQEVFIKLWRGGGVYDESK 65 Query: 61 --PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 RS+L T+++ V +DL R+ + E A +PS E+ E +++ + Sbjct: 66 GKFRSWLFTMSRHVAIDLIRKRKPDLQLDESYAEAIPSDSPSVEKEVEWQEERAQIETAM 125 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L + ++ L GL+ +IA G+ + +VK + A+ Sbjct: 126 ATLPAEQQQVVRLMYFQGLSQQKIADACGIPLGTVKGRIRLALRQLR 172 >UniRef50_C6XU89 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XU89_PEDHD Length = 202 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 78/167 (46%), Gaps = 1/167 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSF 64 L F +Y + + ++ +S A++I Q+ F+R+ + ++T + ++ Sbjct: 19 RNGDQLAFAEIYNLYRSKMYTYACNLCKSTETAEEIVQEVFVRIWQKKDQINTELNFAAY 78 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 + I +++ ++ + +K E + + E+ + E L+ D + L + Sbjct: 79 IKKITLNHVLNHLKKISRDKQLQEEVFHYIATIRNTTEDHLLEKELLKTYDEAIALLPPQ 138 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + + +S+ + +T+ +IA KL +S ++VK ++ +A + + ++ Sbjct: 139 KKLIYQMSRNEEMTHEQIAEKLNISKNTVKNHMVEATKFIRSYVSKH 185 >UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobacteria RepID=P73431_SYNY3 Length = 223 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 11/182 (6%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + + T S F L + + L D D+AQ+ ++RV + L+ Sbjct: 39 LCQQKTRPDSTAFNELLRRYQSHVDKILYHLAPDWQDRADLAQEVWIRVYRNIHRLNEPV 98 Query: 60 DPRSFLCTIAKRVMVDLFRRNAL----------EKAYLEMLALMPEGGAPSPEERESQLE 109 + +L IA + D R+ + + E PSP+E S E Sbjct: 99 KFKGWLSRIATNLFYDELRKRKRVSHPISLDAPRRMDDGEIDWDIESDYPSPDETLSTAE 158 Query: 110 TLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 + L S + L R +L ++DGL Y EIA GVS+ +VK +A+A F Sbjct: 159 FYECLRSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIARARAKLQTFLQ 218 Query: 170 EY 171 Y Sbjct: 219 PY 220 >UniRef50_C9L3N5 RNA polymerase ECF-type sigma factor n=2 Tax=Bacteroides finegoldii DSM 17565 RepID=C9L3N5_9BACE Length = 194 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 75/149 (50%), Gaps = 4/149 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET--LSTIRDPRSFLCTIAK 70 F L+ ++ +KS L+S DA+D+AQ+ F R+ + L R+ S+L + + Sbjct: 31 FSKLFKLYYSKVKSLAYILLRSEPDAEDVAQEVFARLWERQNIWLDNEREFDSYLLIMTR 90 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPE--ERESQLETLQLLDSMLDGLNGKTREA 128 + +++++ + + Y+E + + ER E L ++ S L + + R Sbjct: 91 NIALNIYKHEQVRQEYMEYHMVKSVSSQIDYDFFERFHYREMLGIIYSALAAIPDRRRRV 150 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYV 157 F LS+ G ++ EIA +G+S+ +V++ + Sbjct: 151 FELSRFHGKSHKEIAVIMGISVHTVERQI 179 >UniRef50_C2G4M9 RNA polymerase ECF family sigma factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4M9_9SPHI Length = 190 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 1/158 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSF 64 F Y H L + +K + A D+ Q+ F + TL I + +++ Sbjct: 17 KADDQDAFSMFYNRHKLALYTHAYQKTGNLEQAKDLVQELFTNLWDRRYTLPHILNIQAY 76 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L T + ++D + +E YL+ L G ++ + E ++ ++ L K Sbjct: 77 LHTTLRNRILDYIAHHKVESKYLDSLQEFISKGHCMTDQHIIEAELAAYIEQTVNALPPK 136 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 RE + +S+ ++ EIA +LG+S +VK ++ A++ Sbjct: 137 MREVYTMSRYTPKSHREIADELGISEFTVKNHIKAALK 174 >UniRef50_Q2RW11 Sigma-24 (FecI) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RW11_RHORT Length = 171 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAKRVM 73 SLY +H G L ++ + L A+D+ Q+ +LR + +R P ++L + + Sbjct: 10 SLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAYLYRVVRNTA 69 Query: 74 VDLFRRNALEKAYLEMLALM--PEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 VD RR + E+ E ++ P+ APSPEE + L+L+ + L L + R AF L Sbjct: 70 VDCLRRLSAEERRNEAGEILSDPDRQAPSPEEIALGRDHLRLVAAALSELPERNRRAFEL 129 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + +GL++ +IA L VS ++ + A+ H + Sbjct: 130 QRFEGLSFQQIAQHLEVSPATAHRLARDAMVHVM 163 >UniRef50_Q82WW6 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WW6_NITEU Length = 166 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 4/160 (2%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 + L+ G L ++L RKL S +A DI Q+ +LR + +S+I +PR+FL T+A ++ Sbjct: 8 DELFLQLRGDLLNYLCRKL-SKDEAADILQEIYLR-WRRQDISSIENPRAFLFTVALNLI 65 Query: 74 VDLFRRNALEKAYLEMLALMPEG--GAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 D RR A + Y + + + + + ++ L LD L R AFLL Sbjct: 66 RDQARRQAHVQTYANTMQHLFQDKPADYDLAQHCDERRQIEYLQQALDQLPENVRHAFLL 125 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 +LDGLT++EIA ++G+S SV +Y+ A EHCL +Y Sbjct: 126 FRLDGLTFAEIALQMGISSKSVARYIQHASEHCLTALAQY 165 >UniRef50_B0T4N8 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Caulobacter RepID=B0T4N8_CAUSK Length = 197 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 3/167 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 ++ + F++L + L S+ R+ DA+D+ Q+ F+R+ +P Sbjct: 24 AEPRAALDAPRFDTLVSRYRRPLLSFFQRRSVGIEDAEDLTQEVFMRLSRRFARLHWGNP 83 Query: 62 RSFLCTIAKRVMVDLFRRNALEKA--YLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + T+A ++D R + ++E+ +P+ PS E + E L+ L + LD Sbjct: 84 DGLVFTVAANALIDHERHERSRQRDRHVEVDPGLPD-EEPSAETALAGRERLRGLVAALD 142 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L+ R AF+L + + LT +E A +LG+S+S+V+K++ A+ L Sbjct: 143 TLSPSVRAAFVLCRFENLTQAEAAARLGLSVSTVEKHMMTALARLRL 189 >UniRef50_A6E873 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E873_9SPHI Length = 193 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 68/164 (41%), Gaps = 1/164 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCT 67 +FE L+ H+ L ++ L+ + A++I Q FL+ L ++ +++L Sbjct: 14 DDQSFEQLFKAHYKSLHAYALVILRDSDLAEEIVQGMFLKFWEKRALLNVKTSVKAYLYR 73 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 ++ + ++ + + + E L L L + R Sbjct: 74 CIYNDALNHLKHERIKLKHQQFTHQTMNSSHEPASSKVELSELQLKLSEALRTLPEQCRT 133 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 F +S+ + L Y EIA +LG+S+ +V+ + KA+ + ++ Sbjct: 134 IFQMSRFEELKYREIADQLGLSVKTVENQMGKALRILRVRLADF 177 >UniRef50_C6I4J3 RNA polymerase ECF-type sigma factor n=5 Tax=Bacteroides RepID=C6I4J3_9BACE Length = 181 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL-STIRDPRSFLCTIAKR 71 F +Y + L + L S ++++I Q+ F+ + + T+++ ++L T+AK Sbjct: 6 FSEIYDIYFPKLLRFTRTYLISEDESENIVQEIFIYLWEHRDIIETLQNLNAYLFTLAKN 65 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGG--------APSPEERESQLETLQLLDSMLDGLNG 123 +D FR+ + + L+ + +R S + ++L++ ++ L Sbjct: 66 RCIDYFRKEMVREVRKGSLSEIENRELQLKLYSLEAFDNDRLSDADIEEILNNAINRLPE 125 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + RE F++S+L L Y EIA KL VS ++V+ + A+ +Y Sbjct: 126 RCREIFIMSRLQNLRYKEIAEKLNVSPNTVENQIVIALRKLKEDLKDY 173 >UniRef50_C2FS22 RNA polymerase sigma-70 factor, ECF subfamily protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2FS22_9SPHI Length = 184 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 4/160 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIAKR 71 FE ++ H L + R L+ + A+++ Q F+R+ + + I +++L Sbjct: 16 FEMIFREHFKDLHRYAFRFLEDSAIAEEVVQQVFMRLWERDWETDIHTSLKAYLYRAVYH 75 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ +R L++ Y E L + + E + L L L K+R F + Sbjct: 76 ESLNTLKREQLKRRYQEYQLLHEKDTEYMDQ---GDSELKKQLHQALLQLPEKSRAVFEM 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 S+ L Y EIA L +SI +V+ +++KA+ H + ++Y Sbjct: 133 SRFQDLKYKEIADLLNLSIKTVEGHMSKALRHLRVHLVDY 172 >UniRef50_C3QVX7 RNA polymerase ECF-type sigma factor n=4 Tax=Bacteroides RepID=C3QVX7_9BACE Length = 188 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 2/170 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSF 64 + F +Y + L S++ ++L++ DI QDTFLR+ + L++ + ++F Sbjct: 13 RNGSYQAFTQIYEAYADRLYSFVLKQLKNRSLTQDIVQDTFLRLWDNRNQLNSFGNLQAF 72 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP-SPEERESQLETLQLLDSMLDGLNG 123 + TIAK ++D FR+ E + + + SPE+ E LQ L L+ Sbjct: 73 IFTIAKHQVIDYFRKQVNELQFEDFMEYCENQATDVSPEDILLYDEFLQQLQQSKKVLSQ 132 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 + E + LS+ + +IA +L +S +VK Y+ A++ ++Y + Sbjct: 133 REHEIYELSREKHIPIKQIAEQLDLSEQTVKNYLTSALKILRSEMMKYNI 182 >UniRef50_C6W0P8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W0P8_DYAFD Length = 180 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLC 66 + + L+ ++ L + T A+++ D F ++ E+L+ ++ RS+L Sbjct: 17 GDNRALDCLFRKYYYSLCRFATYLNNRKDLAEEVVADVFFKIWEKRESLTVEKNVRSYLF 76 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 T + ++ ++ EK +E L P P++ E + +++ L K + Sbjct: 77 TATRHTCINYMKQ---EKYVMEELNDDMIEETPGPDDELMYHELETRITDLINYLPQKRK 133 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 F L++ +G TY+EIA L +S +V+ + KA++ L + Y + Sbjct: 134 AIFQLNRFEGFTYNEIAEILSLSAKTVENQMGKAIKQLKLLQKTYQI 180 >UniRef50_A5W6B0 Anti-FecI sigma factor, FecR n=3 Tax=Pseudomonas putida RepID=A5W6B0_PSEP1 Length = 374 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKRVMVD 75 + H+ L +LTR++ A D+AQ+T+L+++ E + RSF+ +A + +D Sbjct: 13 FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVVHARSFIFRVAGNLAID 72 Query: 76 LFRRNALEKAYLEML--ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 RR A + A AP+PE E LQ+LD L L R+A LL++ Sbjct: 73 ALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLNR 132 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 ++GLT ++A +LGVS S V KY+ +A+ HC + G+ Sbjct: 133 VEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQAGV 172 >UniRef50_A7ALM4 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ALM4_9PORP Length = 196 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRS 63 A F++L+ L + R ++ +D+ Q++FL++ + I R+ Sbjct: 17 AVNDDENAFKTLFFQFFSPLCIFAHRYIERWETCEDVVQESFLKIWENRKSIRIETSARN 76 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 FL T + +D R+ LE A+ + + +G PS + S +E +L LD L Sbjct: 77 FLVTSVRNNCIDYLRKQELELAWKQ--WKISKGDEPSGD-IYSIVELRTMLAEALDKLPE 133 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 TR F ++ +G Y+EIA + +S+ +V+ +++KA++ + +Y Sbjct: 134 NTRLIFEKNRFEGKKYTEIAEEQQISVKTVEAHISKALKILRVELKDY 181 >UniRef50_A1ZZ70 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ70_9SPHI Length = 203 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 6/177 (3%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + ++ + FE ++ ++ L ++ L+ ++++ Q+TF+ + I+ Sbjct: 14 IVEKISAHNQSVFEYVFKRYYQELCNFAFMYLKVEQSSEEVVQETFINIWEKRQKLKIQS 73 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE-----GGAPSPEERESQLETLQLL 114 +++L T K ++ + A + + E + EE E +L Sbjct: 74 SIKAYLYTSVKNRSINYLKSKATQVSQKSHSTSSEEHPIHIAENATVEEAMHNAELQHVL 133 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + L + E F L++++GL+Y ++A +LG+S +V+ + A + +F ++ Sbjct: 134 SQAIAALPKRCSEIFTLTRIEGLSYQQVADQLGISKKTVEAQMGIAFKKLRIFIKQH 190 >UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY18_9BACT Length = 187 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 3/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + + ++ FE L+ + + ++ + DADD+ Q+TF++V ++ + Sbjct: 14 LVELVLQGDNIAFEYLFERYKEAIHRLFIQRTNNPLDADDLLQETFIKVYINIHRYNPAY 73 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++ TIA+ VD RR E ++ P P+PEE + + ++ L Sbjct: 74 TFGQWVYTIARNTFVDFIRRRQ-EDLPIDDKFTAPPSNNPTPEENIIRKQQRTQIERYLQ 132 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH-CLLFRLE 170 + + R+ ++ + +Y EIA KL + + +VK + +A E C L + Sbjct: 133 AMPPRYRQLIVMRFFEEYSYEEIAMKLELPLGTVKTQIHRAREQMCRLIAAD 184 >UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=6 Tax=Myxococcales RepID=Q1D3E5_MYXXD Length = 223 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 14/181 (7%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFL 65 + FE+L H + +++ R A+D+ Q+T+L+V+ S T + ++L Sbjct: 30 AGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVRSAGDYTPKAKFTTWL 89 Query: 66 CTIAKRVMVDLFRRNALEKAY-LEMLALMPEGGA------------PSPEERESQLETLQ 112 TIA+ + VD R+ + +A LE A E SPE Sbjct: 90 YTIARNLCVDSARKESYRQASSLEAPAPGAERDESRPLGEGLPDAGASPERGAYNARLRP 149 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 LL+ L L + RE F L + G+ + +IA GVS ++VK + A++ E G Sbjct: 150 LLERALATLPDEQREVFTLREYSGIPFKDIAEVTGVSENTVKSRMRYALDGLRRRLAEMG 209 Query: 173 L 173 + Sbjct: 210 V 210 >UniRef50_A6EIK6 RNA polymerase ECF-type sigma factor, putative n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIK6_9SPHI Length = 195 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 1/158 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSF 64 + F +Y + L + R L A DI Q+ F + +I S+ Sbjct: 17 SENTGPVFNEVYNRYWSQLFLHVRRMLGDDELAKDIVQEVFTNIWERSPDFSISTSLSSY 76 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L T + + + ++ ++ +L+ +A G +E + ++ + + K Sbjct: 77 LYTAVRNRVFNEIKQQKVKSVHLQDIAAFFSRGQYEADEALRYQQLKSAIELEISKMPEK 136 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 RE F LS+ L++ +IA + +S +V+ V +A+ Sbjct: 137 MREIFELSRHQYLSHKQIAALMNISEHTVRTQVQRALR 174 >UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=3 Tax=Peptococcaceae RepID=A5D0C6_PELTS Length = 204 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +R+ FE L + + + R L + DA D+AQ+ FLR+ + Sbjct: 8 LVERSQNGDLEAFEMLVRRYENKVYTVAYRFLGNHADASDLAQEAFLRLYQALPRFRGES 67 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAY-------LEMLA--LMPEGGAPSPEERESQLET 110 ++L I D RR LE + + G PSPE+ + E Sbjct: 68 SFMTWLYRITANACRDELRRRQRNSTVSLDGENGLEHIQNYSLFSGYIPSPEDTVEKKEL 127 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +L+ L+ ++G+ R ++ ++ G+TY EI+ + S+ +VK +++A FR + Sbjct: 128 NELVQMCLNSISGEHRLILVMREIQGMTYDEISAVMNCSLGTVKSRLSRARR---AFREK 184 Query: 171 Y 171 + Sbjct: 185 F 185 >UniRef50_Q1IGG5 Putative RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas entomophila L48 RepID=Q1IGG5_PSEE4 Length = 175 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 L+ H L++++ R+ +A A D+ Q++FLR+ I + +FL TIA ++ Sbjct: 10 RLFTEHKKALEAFVARRTGNAQVAADLTQESFLRLARLPADKQIDNLPAFLFTIASNLVR 69 Query: 75 DLFRRNALEKAYLEM--LALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 D +R + + L+ + AP +E+ + + L+ + + L TR FLL Sbjct: 70 DH-QRQVIRRERLDAGEPSEAIASEAPGADEQLASQQEQALMQAAIQALPEATRHIFLLY 128 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +DG TY EI +LGV+ SV+ + +A+ C F Sbjct: 129 HVDGCTYREIGERLGVTPRSVEYQLRRALLDCRAF 163 >UniRef50_D0TR41 RNA polymerase sigma-W factor n=4 Tax=Bacteroides RepID=D0TR41_9BACE Length = 190 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 1/157 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSF 64 FE+LY ++ + S++ + A A DI QD FL++ + + + Sbjct: 13 KEGNKNAFEALYRAYNARIYSFVLSMIGDAGVAKDITQDIFLQIWEKRLNIDLEGNFDGY 72 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L I++ ++ RR L + Y++ L+ + +E L + + +L+ L Sbjct: 73 LFKISQNMVYHYVRRELLLQNYVDKLSNESADESVEIDEELDYLFLEEYILKLLEELPPA 132 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 RE F+L GL Y EIA +L +S +V V +++ Sbjct: 133 RREVFMLYWKSGLNYREIAEQLDISEKTVATQVHRSL 169 >UniRef50_C6IHS3 RNA polymerase ECF-type sigma factor n=2 Tax=Bacteroides RepID=C6IHS3_9BACE Length = 191 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 5/160 (3%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL-STIRDPRSFLC 66 F LY + + + + + DA++I QD F+++ S L + + FL Sbjct: 13 GDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLF 72 Query: 67 TIAKRVMVDLFRRNALEKAYLEML--ALMPEGGAPSP--EERESQLETLQLLDSMLDGLN 122 + + ++ + ++ E + + A EG S EE + +D +++ L Sbjct: 73 IVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLINSLP 132 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + R+ FLLS+ + L+Y EIA +LG+S +V+ ++ KA++ Sbjct: 133 EQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALK 172 >UniRef50_C7PNP3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PNP3_CHIPD Length = 196 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 2/167 (1%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLC 66 F +Y +H L +L R + A+D+ D FL+V + ++ +L Sbjct: 17 GDESAFTKIYRHYHASLYVYLLRFCKVPSLAEDLVHDVFLKVWEIRDRINPELSFTGYLY 76 Query: 67 TIAKRVMVDLFRRNALEKAYLEML-ALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 IA+ ++ + +K + + L + + + A PE++ E +L L + + Sbjct: 77 RIARNHVIKTIDKLTTDKNFRDQLFSQLEDVSAVQPEQQVRTKEYDRLFQEALVRMPPQR 136 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 F L + +G +Y E+A LG+S ++VKK++ + + +G Sbjct: 137 LNVFKLCRQEGKSYDEVALLLGISRNAVKKHMVLGMRFIYDYVHRHG 183 >UniRef50_A6EEG5 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEG5_9SPHI Length = 197 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 82/172 (47%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIR 59 + F+ +Y +++ + S+ + ++S DA++I Q+ FL++ + + S I Sbjct: 12 LLTEIAGGNQRAFKVIYDSYYRKIFSYALKYVKSETDAEEIIQEVFLKLWLRDPNSLPIG 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + + + + +D+ RR LE +A+ + EE +T ++LD + Sbjct: 72 NLDGYFQVLVRNRSIDVLRRKVLENHVDLDVAVNWQEAHNHTEELIILKDTKKVLDEGIK 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + R+ + L DGL Y E A +L +S+S+V ++ A++ + ++ Sbjct: 132 LLTPQQRQVYKLCHQDGLKYEEAAKELNLSVSTVHSHMKLALKFLREYLKQH 183 >UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A648_NATTJ Length = 206 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 13/183 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + FE L +H + S R + DA+D+AQ+ F+RV S + Sbjct: 11 LVKQCQNGHLDAFEELVHKYHQKVYSLCYRFSGNHDDANDLAQEAFIRVYHSINKFHFKS 70 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAY-LEMLALMPEGGAP--------SPEERESQLET 110 ++L + V +D R+ + + L+ +G +PE + + Sbjct: 71 AFSTWLYRVTSNVCLDEMRKRKRKSSVSLDSPMETDDGELYFNLPDQKFNPELMAERKDV 130 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA---VEHCLLF 167 +++ + L + LL +++G +Y E+A + VS+ +VK +++A ++ L+ Sbjct: 131 QEIVHKAIQELPKDQKLTLLLREMEGFSYDEMAEVMNVSVGTVKSRLSRARNNLKEILVQ 190 Query: 168 RLE 170 + E Sbjct: 191 KTE 193 >UniRef50_C6Y0D6 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0D6_PEDHD Length = 192 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 4/174 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 ++D + F ++ ++ L +K + +A D Q+ F + ETL Sbjct: 12 LADLLKSGDRTAFTEIFNRYNSLLYIHAFKKFNNKEEARDAVQEAFAMIWAKRETLMVKS 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L T + ++D RN + YL L + ++ + ++D ++ Sbjct: 72 NLVGYLYTCVQHKILDQISRNKTARNYLASLQNFIDEVKEGTDDLIRLKQLSAIIDQEIN 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L K RE F LS+ L++ EIA KL +S +VK V A++ + R++ GL Sbjct: 132 ALPNKMREIFELSRKKNLSHKEIAAKLNISEETVKSQVKNALK---ILRVKLGL 182 >UniRef50_B0KF86 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KF86_PSEPG Length = 163 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 E L+ H L +L RK + A DI Q+TFLR+ + + + ++L +A + Sbjct: 2 LEQLFNEHATALHRYLLRKNCTPSLAADIVQETFLRLAQMDGVERLLATPAYLFRVAHNL 61 Query: 73 MVDLFRRNALEKAYLEMLALMP--EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 M+D RR ++ E ++ A SPE++ L+ L + L+ L +TR FL Sbjct: 62 MIDHHRRYGSKRYEAEPASIFDGLIDEASSPEDQALGALELERLHATLELLPERTRNVFL 121 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L +++G+T+ E A L +S SSV+K++A A+ Sbjct: 122 LCRVEGMTHKEAAEYLRISTSSVQKHLASALARI 155 >UniRef50_D0THQ1 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0THQ1_9BACE Length = 194 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSF 64 T L F L+ ++ L + R + +DI QD F + + + +++ RS+ Sbjct: 20 TEDNRLAFHRLFELYYPALCMYAKRFITDKETREDIVQDVFFAIWENRSRISVKTSARSY 79 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L T A+ ++ +RN E+ Y ++ A S EE + E LL LD L Sbjct: 80 LVTCARNHCLNYLQRNH-ERYYESLIQEQIPIYAESSEELYTWEELQTLLRQALDKLPEN 138 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 R AF ++ + +Y EIA ++ +SI +V++Y KA E Sbjct: 139 YRLAFEKNRFENKSYGEIAEEMQISIRTVERYKNKATE 176 >UniRef50_C6XUM3 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUM3_PEDHD Length = 191 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFL 65 + + F +Y G L ++ +++ DA DI Q+ F + V L I+ + +L Sbjct: 26 ASDYIAFTEIYNRFAGILYVFVRKRIGDKDDAQDILQELFTDLWVKRELVNIKGEITPYL 85 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 + M+D RNA +K Y++ + + + + + L++ +D L K Sbjct: 86 YAAVRYKMIDFIERNATQKRYIDAIENFKDQETVMTDHLVREKQLAALIEKQIDQLPKKM 145 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 RE FLLS+ LTY+EIA +L +S +++ + A++ + RL+ GL Sbjct: 146 REVFLLSRNANLTYNEIAQELDLSKQTIRAHAKNAIK---ILRLKLGL 190 >UniRef50_A7AI75 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AI75_9PORP Length = 191 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DP 61 ++ + F++LY + L + +S+ A+DI QDTFL++ ++ Sbjct: 12 EKLKRGSYEAFDTLYDMYADSLYGFALLHTKSSVQAEDIVQDTFLKLWNMRASLSVEGSF 71 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGG--APSPEERESQLETLQLLDSMLD 119 +S L TIAK ++D+FR+ + + + + + E+ + + L Sbjct: 72 KSMLFTIAKNHVIDVFRQQINRPDFEDYIRFCEDEHLLDNTSVEKIYYDDFIDKLAIAKQ 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 L R F +S+ +G++ +EIA +S +VK +++ A++ Sbjct: 132 KLTPAQRNIFEMSREEGMSNAEIAALSDISEQTVKNHLSAALK 174 >UniRef50_C6XYK7 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XYK7_PEDHD Length = 195 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRS 63 ++ F +Y + + ++ + L+S+ +DDI Q+ FL++ + E LSTI + Sbjct: 13 VSSGNEEAFTIIYERYRLRVYLFIKKYLKSSQLSDDICQNVFLKIWENKEELSTINSFNA 72 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 + TIAKR +D +R A+E+ + ++ EE + E L +D+ L L Sbjct: 73 YAFTIAKRQCLDFLKRAAVEQTAMNLILQAYPLDNNITEENQQYNEYLNFIDNTLLRLPP 132 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 +T+E F L + +Y E A LG+S ++KK++ ++++ Sbjct: 133 QTQEVFKLCRQQYKSYDEAAAILGISRHAIKKHMVRSMK 171 >UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8D0 Length = 187 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + RA FESL H L + R L DA+D+ QDT ++ S LS Sbjct: 13 LVVRAREGDIDAFESLVDRHETKLLRFCLRTLGDRQDAEDVVQDTLVQAWKSLNALSEPA 72 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALM--PEGGAPSPEERESQLETLQLLDSM 117 +++ +A D+ RR + + M G S E+ LQ S+ Sbjct: 73 AFGTWIYRLASNKCTDMLRRRMARPSDAQDPDDMSIHPDGRASVEKSVEARTALQHFSSV 132 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L L+ + R A++L Q++GL+Y+E+A LG+S SV+ + +A + Sbjct: 133 LQTLSSEQRVAWVLHQMEGLSYAEVAATLGISEGSVRGRIHRARTAVM 180 >UniRef50_Q82WV0 Possible sigma-70 factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WV0_NITEU Length = 219 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 1/165 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 S LY + L S + R A D+AQD ++R++ ++ +P ++L I Sbjct: 49 DSPLLADLYKKYRSRLISRIARLTGCRETAADLAQDAYMRLLDQTGVACPSNPAAYLFRI 108 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 + + +D RR + +++ + + L + + L A Sbjct: 109 GRNLAIDHQRRPDFRQHDETSFEEELPSSFSGLDQQAVYRQECEQLWTAIMELPRPVSRA 168 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 +LS ++G++ + IA +LGV+ +V++Y++K + HC RL L Sbjct: 169 LVLSVIEGVSQAAIAEELGVTERTVRRYISKGMAHC-QRRLRNPL 212 >UniRef50_C6XVX9 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter RepID=C6XVX9_PEDHD Length = 193 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 1/173 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + ++ F LY + + ++ L+S A+D+ QDTF+++ + ++ T R Sbjct: 11 LLEKLKQQDRAAFSQLYNLYVKKIYAYALGILKSPVLAEDVTQDTFVKLWEHAASVRTDR 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + FL TIA+ + +++ ++ + E + L + + + +T + + + Sbjct: 71 SVQGFLFTIARNLALNILKQASRETWISDELFGHALDQSEDGLQYTERRQTGEFIGKAIA 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L + R + L + G +Y + A KLG+ S+V + KA++ F + G Sbjct: 131 QLPPQRRLIYDLCRNYGYSYKQAAEKLGIKDSTVNSQMVKALKTIKDFMVRNG 183 >UniRef50_Q82W77 Putative sigma-70 factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82W77_NITEU Length = 169 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 + H+ L + TRK S D +D D +++ S +STI PRS+L + + + D Sbjct: 11 WLAHYNELIRFWTRKTGSRGDVEDATHDVITKLLES-NVSTISSPRSYLHSSIRNRLTDS 69 Query: 77 FRRNALEKAYLEMLALMPEGGAP----SPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +R+N + L + +PE P P ++ L L L L K R+ F+ Sbjct: 70 YRQNKI--LDLVPIHDLPEDSHPLQPNDPVTHTCTMQLLTALKEALQELPLKCRQVFIWH 127 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 +L+G + +EIA KL +S++ V+KY+ +A H ++ Sbjct: 128 RLEGYSQTEIAEKLDISVNMVEKYMIRATRHLRDRLQDH 166 >UniRef50_C8WQW1 RNA polymerase sigma factor n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQW1_ALIAD Length = 191 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 3/163 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL--STIRDPRS 63 E+LY + S+ R + A++I QD F++V + + Sbjct: 15 ARGQRDALEALYDRFARLVYSFAYRVTGNVSHAEEIVQDVFVKVWRQAHAYNPALGKVST 74 Query: 64 FLCTIAKRVMVDLFRRNALEKAYL-EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +L TIA+R +DL RR ++ E L + AP+P+ Q + + L L Sbjct: 75 WLLTIARRSAIDLHRRERRQQHESGEELFPILPDHAPTPDRVAEQSDLRSRIRQALAKLP 134 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + R+ G T +EIA + G S+ +VK A++ Sbjct: 135 EEQRQVVEWMYFQGYTQNEIAERFGWSLGTVKSRARLAMQKLR 177 >UniRef50_A9DTH0 Putative RNA polymerase sigma factor n=2 Tax=Flavobacteriaceae RepID=A9DTH0_9FLAO Length = 171 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 1/165 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 S+ + +F + Y T+ ++ K A DI Q+ F++V + Sbjct: 3 SEHGSLCDESSFNNFYATYLQAASNFAFYKSGDKASAMDIIQEAFVKVWENCAKIDPSKA 62 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 +++L T +++ + + Y E A + P + E Q L + + L Sbjct: 63 KTYLFTTINNTFLNVVKHQKVVLNY-EKTASYMDRTNQDPAYIMEENEFKQKLQNAIADL 121 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + K RE FLLS+++G Y EIA L +S +V+K ++ A++ Sbjct: 122 DDKEREVFLLSRVEGKKYREIAELLDISQKTVEKRMSLALKKLRA 166 >UniRef50_Q2Y7Y7 Sigma-24 (FecI-like) n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y7Y7_NITMU Length = 169 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 2/160 (1%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 + ++ H L+ + L + A+D+ QD +L+V + + ++ P ++L + Sbjct: 5 EQVELSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAYLFQM 64 Query: 69 AKRVMVDLFRRNALEKAYLEMLA--LMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 + + +D RR + E E L PE E L+L+ + L +TR Sbjct: 65 VRNLAIDHHRRISFELNLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELPERTR 124 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 AF L +L+G T+ IA +L +S S V + +A++HC Sbjct: 125 RAFELHRLEGQTHRAIAAELAISTSLVNILIHEALDHCRA 164 >UniRef50_A6EFD9 Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EFD9_9SPHI Length = 189 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + D L +E +Y + L + R LQ +A D+ QD F + +TL Sbjct: 12 LLDHFQQGDRLAYEEIYHRYWALLFNHGRRILQDDEEAKDLVQDAFAVLWKDGKTLVLKT 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++L + + + DL R ++ YLE L S + + + +++ + Sbjct: 72 SLSAYLYAVIRYKVFDLIDRQKVKNGYLESLEHFIAENNYSSDHLVREKQLEVIIEKEIA 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 L K RE F LS+ L+Y EIA KL +S ++VKK + A++ Sbjct: 132 ALPAKMREIFELSRKANLSYLEIAQKLNISDNTVKKQINNALK 174 >UniRef50_Q82VA5 Sigma factor, ECF subfamily n=3 Tax=Proteobacteria RepID=Q82VA5_NITEU Length = 175 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 5/160 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMVD 75 ++ L ++ R L+ A D+ Q+ + R +V+ + + I DPR+ L + +++D Sbjct: 4 VTDYYKELLNFCARTLKDRDAAADLVQEAYTRFLVAQRSGAAIADPRALLFRTTRNLLID 63 Query: 76 LFRRNALEKAY-LEMLALMPEGGAP---SPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 RR + L+ L + AP PEE + Q L + ++ L + REAF+L Sbjct: 64 QHRRAEVRMHLSLDTLLEEEQPLAPRHLQPEEVLAFSRYAQALYAAIESLPRRCREAFIL 123 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 ++ DGL++ E+A K+G+S + V +++ + V C + Sbjct: 124 NRFDGLSHQEVAEKMGISRNMVAQHIIRGVLVCKACDDRF 163 >UniRef50_B4RFZ0 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RFZ0_PHEZH Length = 183 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 10/169 (5%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 ++ + ++ Y H GWL ++L R+ SA DA+D+AQ+TF+R ++ T+R+P Sbjct: 25 AEASARHDHPQLDAAYRDHAGWLVAFLRRRF-SARDAEDLAQETFVRAAGAQ--VTLRNP 81 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 R FL +A RV+ D RR A + PE AP P Q E + LL ++ L Sbjct: 82 RGFLARVALRVVQDDARRQAARPTF------APEDAAPDPATDPDQAEAV-LLKEVVLSL 134 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 K RE FLLS+ GLTY EIA + +S+ +V+ + +A+ C+ + Sbjct: 135 PPKLREVFLLSRFHGLTYEEIARRCNLSVKTVEARMTRALAMCVARLRD 183 >UniRef50_A7LSQ3 Putative uncharacterized protein n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7LSQ3_BACOV Length = 191 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 5/169 (2%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL-STIRDPR 62 R + F+ L+ ++ ++ + ++ +F ADDIAQ+ F++V L R Sbjct: 10 RMISGDINAFKLLFDRYYSQVRFFTLGIVKDSFVADDIAQNVFIKVWTKRELIDCERKFN 69 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSP--EERESQLETLQLLDSMLDG 120 ++L +I K + D FR + + LE ++ + + E +L+ +D Sbjct: 70 NYLYSITKNEITDYFRSLVISE-PLESISYLKDSDHTDEMIESVYDLSHIKELVMKEVDN 128 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 + + R F++S+L GL+ EIA KLG+S +V++++ A+ H L +L Sbjct: 129 MPPQRRAVFVMSRLQGLSNDEIASKLGISKRTVERHLNIAL-HILREKL 176 >UniRef50_Q1G4X3 BhoD n=1 Tax=Bordetella holmesii RepID=Q1G4X3_9BORD Length = 164 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 86/153 (56%), Gaps = 3/153 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIRDPRSFLCTIAKRVMVD 75 TH+ L +L+R+ S A D AQ+T+L++ + +S I + R+++ +A + +D Sbjct: 7 VATHYRELVDFLSRRTGSRDSAQDCAQETWLKLAGMQAVSAPISNVRAYVFQVAANLAID 66 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPE--ERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 + RR E +E A GA SP+ E + + + L++ + +TR+ FLL + Sbjct: 67 MQRRQTAENRNIERYAQFQLPGATSPDTAEIAALRQVIARLEAAILAQPLRTRQIFLLHK 126 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 +DG +Y++IA LGVS+ +++K++ + + C L Sbjct: 127 IDGQSYADIAQALGVSLKTIEKHMTRVLLACRL 159 >UniRef50_Q4KAM1 RNA polymerase sigma-70 family protein n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KAM1_PSEF5 Length = 172 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 3/159 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRSFLCTIAKRVM 73 LY +H L + + A+++ Q+ +LR +++ + +P +L I + + Sbjct: 13 ELYLSHRTALVDYSAPIVGCRAQAEEVVQEAWLRFCGQADSAAQPSNPVGYLYRIVRNLS 72 Query: 74 VDLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 DL RR+ LE + + L+ E PSPE + + L+LL L L +TR AF + Sbjct: 73 FDLLRRSTLENRHPDGADLLNELPSSTPSPEHQALHSDQLRLLQDALALLPERTRRAFHM 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +L LT+ EIA +L +S S + V A+ HC + Sbjct: 133 HRLQHLTFQEIAAELKISSSLAHQLVRDALTHCAEHLAD 171 >UniRef50_C7PPV6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PPV6_CHIPD Length = 187 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSA-FDADDIAQDTFLRVMVSETLSTIRD-PRSF 64 + + F++++ ++ L + L +A+DI + F + + I ++ Sbjct: 17 SGSEDAFDAIFKRYYEGLLQFAKVLLPYPTDEAEDIVAEMFCTLWHNRRQIDISTTLSAY 76 Query: 65 LCTIAKRVMVDLFRRNA-LEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 L + + D +R+ + E LA P+ G P+ + + + S++ L Sbjct: 77 LYVSVRNRVFDYYRKRKTIFNLPEEALADTPDVGYQQPDHQLMYKDITSQIQSLVAQLPP 136 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 + R F + + +G +Y EIA L +S++SVK ++ +A++ Sbjct: 137 QMRLVFKMHRYEGFSYDEIAGLLNISLNSVKTHMFRALK 175 >UniRef50_A1BAQ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAQ3_PARDP Length = 170 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMV 74 L+ TH G + S+L R L+ A+D+ QD FLR + ++ + R +L IA+ + V Sbjct: 9 LFCTHRGDVSSYLARMLRDPDLAEDLTQDAFLRCCTALQSGGRPENLRGYLYRIARNIAV 68 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSP--EERESQLETLQLLDSMLDGLNGKTREAFLLS 132 D R + + ++ P P E R E L++ L L KT+ F+L Sbjct: 69 DHLRLQKRRRTDMPGDHVLAAIADPRPGQECRMIDRERLKVFLRALAALPDKTQRIFVLH 128 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 ++ L+Y E+A + +S SSV+K++A+A+ EY Sbjct: 129 RIQRLSYREVAQDMELSESSVQKHLARALLEVTRRLREY 167 >UniRef50_C1DGX2 RNA polymerase sigma factor, ECF subfamily n=1 Tax=Azotobacter vinelandii DJ RepID=C1DGX2_AZOVD Length = 172 Score = 138 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 5/160 (3%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLR---VMVSETLSTIRDPRSFLCTI 68 + L+ +H L+ R+L A D+AQD F+R ++ I +P+ FL I Sbjct: 4 DLDRLFRLYHRELRQLAYRRLGDPETAADLAQDAFVRYAGLIRKHPRQAIANPQYFLWRI 63 Query: 69 AKRVMVDLFRRNAL--EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 + +++DL R A E+ L+ P PE + LQLL + L R Sbjct: 64 LRNLIIDLRRGQARRGEQTSLDEAESELHDQRPGPERLLELRQQLQLLHRAFEELPPACR 123 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 +A LL++++GL+++ IA +LGVS S V KY+ +A+ HC+ Sbjct: 124 DALLLNRVEGLSHAAIAERLGVSPSMVCKYIMRALRHCIR 163 >UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSK7_DYAFD Length = 192 Score = 138 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPR 62 + F L+ +H WL + R +S A+++ D FL++ E LS I + Sbjct: 16 QVAAGDERAFSRLFDHYHQWLGMHIYRITRSEQIAEELVHDVFLKIWLNRELLSGIENFS 75 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +L I+K ++ ++ A+E++ L E G PE+ + L+D +D L Sbjct: 76 VYLFVISKNAALNALKKIAVERSRFTDL---DEAGDIMPEQPDDYR--YALIDEAIDRLP 130 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 + R+ ++LS+ L+YSEIA ++G+S +VKKY+ A Sbjct: 131 PQQRQVYMLSRHQRLSYSEIALRMGLSRETVKKYLQIA 168 >UniRef50_Q0AEC0 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Nitrosomonas RepID=Q0AEC0_NITEC Length = 169 Score = 138 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 5/161 (3%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 +++ S F +LY + L S +T + A D+AQ+ ++R++ LS I ++L Sbjct: 2 SSSDSPVFTALYKQYQSQLISRITCLVGCRETAADLAQEAYIRLLGHRDLSNILSLSAYL 61 Query: 66 CTIAKRVMVDLFRR--NALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 I + +D R N +E L+ P P E S + +LL + + Sbjct: 62 FRIGHNLAMDHQRDPLNKIEYLLLDETLPCP---LLQPHEIVSLRQQCRLLLDTIASMPQ 118 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 R+ FLL ++D L+YSEI+ L +S +V++ + +A+ C Sbjct: 119 GCRDVFLLRKIDELSYSEISIHLNISEKTVQRRLVQAMLRC 159 >UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU8_PELCD Length = 214 Score = 138 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 9/175 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +R F L H + + R L +A+D+AQ+ FLR+ S + Sbjct: 30 LLERIRQGDEGAFTQLVSGHLSSVVNLAYRMLGDRQEAEDLAQEAFLRLHRSLPSFRGDC 89 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKA------YLEMLALMPEGGAPS--PEERESQLETL 111 +++L + R+++D RR + + + + + PS P ++ ET Sbjct: 90 RIKTWLYKVVSRLVIDHIRREQVRRRIFFFRKHEDDPDPVANFADPSASPSDQLLGQETR 149 Query: 112 QLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 Q L ++ L+G+ R F+L +GL EIA L + +VK ++ +AV+ Sbjct: 150 QKLFKAMEKLSGRQRAVFVLRHQEGLPLKEIAQVLHLKEGTVKAHLHRAVQCIRQ 204 >UniRef50_A6LIX1 RNA polymerase ECF-type sigma factor n=8 Tax=Bacteroidales RepID=A6LIX1_PARD8 Length = 184 Score = 138 bits (349), Expect = 6e-32, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Query: 3 DRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDP 61 ++ F L+ +H + ++ ++S DA+D+ Q+ FL++ + + +R Sbjct: 9 EQFAAGNHTAFRELFMRYHLKVYYFVLGLVKSESDAEDLTQEIFLKLWTHRSRFTEVRTF 68 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 S+L +AK + + LE + E +P E + L+D +++ + Sbjct: 69 GSYLYVLAKHTAFNYIESRRVNLESLERAGVEDEERGDTPYEDLVAKDLRLLVDMIVETM 128 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + + + +S+ +GL+ +EIA L +S +V+ ++ A++ L + Sbjct: 129 PPQRKMIYRMSRDEGLSNTEIAENLQLSKKTVENHLNLALKELRNAVLTF 178 >UniRef50_Q2RRS3 Sigma-24 (FecI) n=3 Tax=Alphaproteobacteria RepID=Q2RRS3_RHORT Length = 214 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 5/174 (2%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 S R S +++ ++ L LTR +Q A+D+ Q+T+LRV + I Sbjct: 28 SVRRKRIVSAVLNAVFESYRRSLLGKLTRIVQDRQIAEDLTQETYLRVRRAAESGPIDHI 87 Query: 62 RSFLCTIAKRVMVDLFRRNALEK-----AYLEMLALMPEGGAPSPEERESQLETLQLLDS 116 +FL A+ + +D RR A + PS EE + +TL +L Sbjct: 88 EAFLHRTARNLALDHLRRTKRRAGMGSSAVEDGAIDDLADDRPSAEEALIERQTLTVLSE 147 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + L + R LS+++ ++IA LG+S +V + A+ HC Sbjct: 148 AMARLPQRARLVLTLSRVEDWPNTKIAAHLGISERTVFNDLKLALGHCRDAMAR 201 >UniRef50_B1ZTK0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZTK0_OPITP Length = 189 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 F + Y L+ +L R L + DA D+A D + R+ + I PR+FL T A Sbjct: 6 PTDFGAFYRATVIPLRRYLARMLGNRSDAQDLAHDAYARIYAAFEGERIDAPRAFLFTTA 65 Query: 70 KRVMVDLFRRNAL--EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +R+ ++ +R + + L + P E + L++ + L R Sbjct: 66 RRLALNQLQRRRIAPVREVDGKLIELAPAQGPGVERVVMARQEWARLETAIAALPPGCRS 125 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKY 156 LL +++GL+++EI +LG+++S+V+K Sbjct: 126 VLLLCKVEGLSHAEIGARLGIAVSTVEKQ 154 >UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacillales RepID=SIGW_BACSU Length = 187 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 9/171 (5%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPR 62 + F + + + R L + +A+DIAQ+ F+R V+ I R Sbjct: 11 QVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFS 70 Query: 63 SFLCTIAKRVMVDLFRRNA------LEKAYLEMLALMPEGGAPS--PEERESQLETLQLL 114 ++L IA + +D R+ E A E L + + A PE+ LE + Sbjct: 71 TWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTI 130 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 + L K R +L +D L+ EI L + + +VK + + E Sbjct: 131 QQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALR 181 >UniRef50_C7PU34 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PU34_CHIPD Length = 171 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 4/155 (2%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCT 67 TFE ++ HH ++ + +A+++ Q FLR+ + I RS+L Sbjct: 3 DRQTFEDIFREHHAACLAFAVHYTGNVHEAEEVVQQVFLRLWEKRAVIDITGATRSYLLA 62 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 + + +R+ + + + + P + E + L+ L + RE Sbjct: 63 AIRNTAISNWRKETVRQEKEQTAGHLQAADVPV---QSPVWELEKRYQQALEVLPERCRE 119 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 F+LS+ L Y EIA + +S+ +V+ + KA++ Sbjct: 120 VFILSRQQQLKYHEIAEVMNISVKTVENQMGKALK 154 >UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AX4_SOLUE Length = 236 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 8/181 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV--SETLSTI 58 + R +E L H + R SA +A D+ Q+ FLRV ST Sbjct: 54 LVSRCLGGDEAAWEELVRQHTRQVYGLCFRFTNSAQEAQDLTQEVFLRVFKTIKTFRSTE 113 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMP------EGGAPSPEERESQLETLQ 112 ++L + + +++D +RR ++ + +P GA P++ + E + Sbjct: 114 GSFGTWLARVTRNLLIDHYRRTRQQRVTDSIEDQLPVLEQVGTSGAARPDQALAGREASE 173 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 +L + L L+ REA +L L + Y EIA L + +VK + + + Sbjct: 174 ILQATLQKLSPDLREAVILRDLQEMEYREIADVLDIPEGTVKSRINRGRAELARLLRKQK 233 Query: 173 L 173 L Sbjct: 234 L 234 >UniRef50_A4ABA6 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4ABA6_9GAMM Length = 186 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y LK + R Q D +DI QD ++ + + I +P +FL A+ + ++ Sbjct: 10 YIRVKDRLKGTVRRITQRPEDVEDILQDAYINTYCAAKKAEIDNPEAFLAKTARNLALNH 69 Query: 77 FRR--NALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 + E + + + E++ + L + L + R+ F+L ++ Sbjct: 70 INSYYEKNAQQMGENVEQIVIPDSTQVEDQVASQNRFLDLCIAVRTLPPQCRKVFVLKKV 129 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 G ++ EIA ++ +S +++K++ K ++HC+ + Sbjct: 130 YGYSHKEIALEMNISEKTIEKHITKGIKHCVKY 162 >UniRef50_A6LGK6 RNA polymerase ECF-type sigma factor n=5 Tax=Bacteroidales RepID=A6LGK6_PARD8 Length = 186 Score = 138 bits (348), Expect = 8e-32, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 7/166 (4%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRSFL 65 +++ L+ ++G L ++ L DA+D+ Q+ FL + + I + +L Sbjct: 22 NNDYISYNKLFDRYYGRLCQYVYSLLMDRNDAEDVVQELFLNLWKNRGRIEIKENVSGYL 81 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 +AK + ++ R + E L+ + + E L +D L ++ Sbjct: 82 YRMAKHLALNFIRSKVQTGSLSENQDLLLLSYE---DNQLETEEFRIALYDCIDHLPDRS 138 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYV---AKAVEHCLLFR 168 RE LL ++ GL EI+ KL +S+ ++K + + ++ CL + Sbjct: 139 REVLLLHRVKGLKQKEISEKLSISVKTIKNQIWMSLQKLKECLEMK 184 >UniRef50_B4W7I6 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7I6_9CAUL Length = 159 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 21 HGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN 80 L R L + A+DIAQ +LRV + I+D R++L +A + D RR Sbjct: 4 RPSLVRLARRILGDSSLAEDIAQTLWLRVQRIADPAAIQDKRAYLYRLALNLASDQMRRR 63 Query: 81 ALEKAYLEMLALMP--EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLT 138 E P AP+ E R + L LL +D L + RE FLL +++ L+ Sbjct: 64 KRGAVLFEGQIEDPGVIDAAPTTEARIMHRQRLDLLAEAIDELPPRCREVFLLRRIEELS 123 Query: 139 YSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +E+A +LG++ ++V K+V A+ HC E Sbjct: 124 PAEVAERLGITPNAVAKHVRHALHHCQTRLAE 155 >UniRef50_B5JK98 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK98_9BACT Length = 181 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 5/163 (3%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKRVM 73 +L+ +H L + R + ++D+AQ+TF R++ +T + R R+++ IA+ +M Sbjct: 14 TLFEKYHVALVGFFRRMGGQSQLSEDLAQETFWRILRYRKTYDSRRPFRAWMYQIARNIM 73 Query: 74 VDLFRRNA-LEKAYLEMLALMPEGGAP---SPEERESQLETLQLLDSMLDGLNGKTREAF 129 D ++NA + + + + L PE A E+ + + QLL L L + RE Sbjct: 74 YDQAKKNASASRVFDDRIELEPERFAEPDCDVEKEVERSDNKQLLRQALGKLPEEKRELI 133 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 ++ + + L Y+EIA G S+ ++K + +A++ +E G Sbjct: 134 VMCRFEELPYAEIAPIFGCSVGTLKVRLFRALQELKDVFVELG 176 >UniRef50_B4WBG5 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBG5_9CAUL Length = 163 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 11/168 (6%) Query: 1 MSD--RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI 58 MSD A+ + LY + GWL L ++ +A D+ Q+T+LR+ + I Sbjct: 1 MSDVKEMNPDAAASLNGLYRRYSGWLGKRLRGRVG-VDEAADVVQETYLRL-APYLIEDI 58 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 R P++ L +A ++ D RR AL ++ + +P +R L +L Sbjct: 59 RHPKALLLRVALNLVRDERRRMALRDRAMQGAIPIWVTAVDAPVDRLH-------LKQVL 111 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + R+ F+LS+ DG+TY EIA G+S+++V++ +AKAVEHC+ Sbjct: 112 LTMPPLYRDVFVLSRFDGMTYPEIALAHGISLATVERRMAKAVEHCMA 159 >UniRef50_D2QQH7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Flexibacteraceae RepID=D2QQH7_9SPHI Length = 194 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 76/166 (45%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T F +Y + L S K+Q+ +++ QD FLR+ I ++L Sbjct: 16 RTGDENAFREIYLRYWKKLFSIARHKIQALDAVEELVQDIFLRLWERRDSLQIDRLDAYL 75 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 T + ++ + +++ Y + + + +E+ E + ++ L+ L KT Sbjct: 76 FTAVRYACINHIKSALVKEKYADYAYDHYNDASYATDEQLDLDELMDAVEQQLNDLPEKT 135 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R+ F L++L+ + EI+ L V +V+ ++++A++ ++ +Y Sbjct: 136 RQIFRLNRLEYQSVKEISTSLKVPERTVEYHISQAIKSLRVYLRDY 181 >UniRef50_A6LGK0 RNA polymerase sigma factor n=3 Tax=Parabacteroides RepID=A6LGK0_PARD8 Length = 188 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 1/161 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSF 64 FE+L+ ++ + ++ L A+D+ Q+ FL++ ET+ ++ ++ Sbjct: 12 KNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDAY 71 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L TIA+ ++ L + E L EER + ++S+++ L Sbjct: 72 LFTIARNLVYKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREYINSLIEELPLS 131 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 RE F LS+ + L+Y EIA +L +S +V+ +++A+ Sbjct: 132 RREIFRLSRHEHLSYKEIAERLSISEKTVETQLSRALRFLR 172 >UniRef50_C3K3P3 Putative ECF-sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K3P3_PSEFS Length = 177 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 L+ L++++TR+ SA A D+ Q++FLR+ ++ I + +FL TIA ++ Sbjct: 10 RLFAEQKKALEAFVTRRTGSAQVAADLTQESFLRLARLDSGEKIDNLPAFLFTIASNLVR 69 Query: 75 DLFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 D +R A+ + L+ E G P +E+ + + QL+ + L TR+ FLL Sbjct: 70 DH-QRQAIRRERLDAGEPSEELPCGNPGADEQLAAYQQEQLMQDAILALPEATRQIFLLY 128 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 +D L+Y EI +L ++ SV+ + +A+ C + Sbjct: 129 HVDELSYREIGERLSITPRSVEYQLRRALIECRAY 163 >UniRef50_Q7M8T6 PUTATIVE RNA POLYMERASE SIGMA FACTOR n=1 Tax=Wolinella succinogenes RepID=Q7M8T6_WOLSU Length = 157 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 5/154 (3%) Query: 18 GTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIRDPRSFLCTIAKRVMVDL 76 ++ L + + L A D+ Q+ + RV+ + I PR+ L AK + VD Sbjct: 3 EAYYRELLGYFQKSLGDIHLASDVVQEAYARVLSLQAKEIPIAKPRALLYKTAKNIAVDE 62 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 +RRN + E L + E E + L +D L + +EAF+L +L+G Sbjct: 63 YRRNRRQ----ENLLHEQARACVQEWQGEESFELQETLLRAIDSLPPRCKEAFVLHKLEG 118 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + +E+A K+G+S + V+K++ KA+ C E Sbjct: 119 FSQAEVAEKMGISKNMVEKHIIKALLECERALEE 152 >UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizobiaceae RepID=A4YXH9_BRASO Length = 234 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 5/173 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL--STI 58 + DR T + F L H + R + SA DA+D+ QDT L+V Sbjct: 54 LLDRLATGDEVAFRLLVERHIDRAYAIALRIVGSAADAEDVVQDTMLKVWTHRGRWQHGR 113 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L + +DL R+ E +++ +P+G P + + LL+S + Sbjct: 114 AKFSTWLYRVVSNRCIDLRRKPRTENV--DVVPEVPDGK-PDAVSVIERAQMSDLLESAM 170 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + R A +LS + ++ EIA + ++++V+ + + + + Sbjct: 171 QRLPEQQRVAVILSYHENMSNGEIAEVMETTVTAVESLLKRGRQQLREMLRRH 223 >UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QRQ4_CHLT3 Length = 188 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAK 70 F L + + R L+S DADD+AQ+ F+++ + + + ++ IA Sbjct: 22 AFTELIRRYQEKIYWVCRRMLKSHDDADDVAQNVFVKIYHALDKFNEASQFFTWAYRIAA 81 Query: 71 RVMVDLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 ++ R + +A L+ L P G P+E + E +L++ + L K R+ F Sbjct: 82 NESINYMRSQKVRQAVGLDTLMSEPAGKESHPDEHLEKTEQSKLIEEAIARLPEKQRKVF 141 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVE 162 ++ + L+Y EIA LG S+ +K A + Sbjct: 142 VMRYYEELSYEEIAESLGTSVGGLKANYFHAFK 174 >UniRef50_C7PFD0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PFD0_CHIPD Length = 193 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 1/168 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSF 64 F LY H + +++ SA DA+DI Q+TFL + E L I +P S+ Sbjct: 14 RQGDESAFRQLYDRHSRQVAAFIFHLTHSAVDAEDILQETFLTLWTSREQLPAIVNPASY 73 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 + IA+ +D R+ A ++ ++ + A + + E+ QL+++ L L+ + Sbjct: 74 IFIIARNKTLDHLRKIARQQKLVDHVWANISATADALDLELDARESQQLINTALSRLSEQ 133 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 R F LS+ DGL ++ IA KL +S S VK + + F ++ Sbjct: 134 QRTIFRLSRQDGLDHATIADKLHLSKSRVKNVQVETLRFIRQFLSQHA 181 >UniRef50_Q1I5S0 Putative RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas entomophila L48 RepID=Q1I5S0_PSEE4 Length = 198 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 78/151 (51%) Query: 19 THHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFR 78 H+ L+ +L +L++ DA DIAQ +F + S + + R+ L A+ + +D +R Sbjct: 43 AHYSDLRRYLCGRLRNPDDAADIAQSSFAQAYAHALNSPVINARALLFQAARNLCIDQYR 102 Query: 79 RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLT 138 R + E A LE E PS E+ E LQLL + ++ + RE F+ +L G + Sbjct: 103 RRSTELAALEDWLARAELLTPSVEDIMIAREQLQLLIARIERMPRLRREVFVRVRLHGHS 162 Query: 139 YSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 + E+ LG+S SV+ ++A+AV R+ Sbjct: 163 HREVCEALGLSAKSVELHIARAVFDLSELRM 193 >UniRef50_B1ZXK0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXK0_OPITP Length = 186 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 6/158 (3%) Query: 20 HHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRR 79 H L+++L D DD+ Q+T+ R+ V +T IR R+F+ T A+ V +DLFRR Sbjct: 19 HEPALRAYLQSHFPLLQDPDDVIQETYKRLWVEQTAGRIRHVRAFMFTAARNVALDLFRR 78 Query: 80 NALEK----AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 + + E++ ++ E APS E SQ + L++L + L + R+ LL L Sbjct: 79 TRKIQFEPLTHPEVIDVVKE--APSTAEALSQQQELEILAQAVQKLPDRCRQVMLLRYLK 136 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 G +Y EI+ L +S +VK ++AK ++ C GL Sbjct: 137 GCSYKEISALLDISPETVKTHLAKGIQQCTDHFAACGL 174 >UniRef50_A6E7V9 RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) n=1 Tax=Pedobacter sp. BAL39 RepID=A6E7V9_9SPHI Length = 197 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 65/155 (41%), Gaps = 2/155 (1%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD--PRSFL 65 +Y + + + +L + +A++ QD ++ ++ ++L Sbjct: 19 GDERALIEIYNRYWEKMLAVAYNRLGNQEEAEECIQDVLYKLWKLRGDFSLSKVGLSNYL 78 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 + ++ + E+ + + SPE + E Q +D ++ L + Sbjct: 79 SRAIRNQAFNMLEQRYRERKKSDSYVPSDDVNLLSPERQLMIRELQQQIDDSINSLPPQC 138 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 + F LS+ +GL+ EIA KL +S ++VK ++ KA Sbjct: 139 QLVFKLSRQEGLSNKEIAEKLNLSENTVKSHLKKA 173 >UniRef50_C6ITD4 RNA polymerase ECF-type sigma factor n=7 Tax=Bacteroides RepID=C6ITD4_9BACE Length = 187 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSF 64 + F++ + ++ +K ++ LQS +A+D++QD FL + + + L TI + + + Sbjct: 14 SEGDEKAFKTFFLYYYPRIKGFINGLLQSQEEAEDLSQDIFLTLWNNRSSLHTINNLKPY 73 Query: 65 LCTIAKRVMVDLFRRNALEKAYL--EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 L I+K + R L + Y E P + ++ E L+ +++ + Sbjct: 74 LFRISKNAVYRHIERALLFRNYQQKETEKYSPPQESNETDDTIHLKELELLVTMVVEKMP 133 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAV 161 + ++ + +S+ G+ EIA +LG++ +V+ ++++A+ Sbjct: 134 PQRQKIYKMSRESGMNNEEIARELGINKRTVENHLSQAL 172 >UniRef50_Q8A5P0 RNA polymerase ECF-type sigma factor n=9 Tax=Bacteroidales RepID=Q8A5P0_BACTN Length = 193 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 16/178 (8%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLC 66 TA F LY +++ L + + + + DA++I QD FL + + L ++ P ++L Sbjct: 12 TAQKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLF 71 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGG--------APSPEERESQLETLQLLDSML 118 + K ++ R + L+ + E + + S E + + + Sbjct: 72 SAVKHRCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAI 131 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA-------VEHCLLFRL 169 D L + RE F++S+L G+ Y EIA LG+S ++V+ +A A + HC+ L Sbjct: 132 DSLPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREELRHCMPLLL 189 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P23484 Probable RNA polymerase sigma factor fecI n=27 T... 207 1e-52 UniRef50_C4XCZ5 RNA polymerase sigma factor n=9 Tax=Enterobacter... 200 1e-50 UniRef50_A3HXR4 Putative RNA polymerase ECF-type sigma factor n=... 195 6e-49 UniRef50_C6W4E3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 1e-47 UniRef50_Q1GXU3 Sigma-24 (FecI-like) n=1 Tax=Methylobacillus fla... 190 1e-47 UniRef50_A9BWH7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 186 3e-46 UniRef50_Q4KKE1 RNA polymerase sigma-70 factor, ECF subfamily n=... 184 1e-45 UniRef50_D0TET6 RNA polymerase sigma factor n=2 Tax=Bacteroides ... 184 1e-45 UniRef50_D2QFM1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 183 3e-45 UniRef50_C6Y3R1 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 182 3e-45 UniRef50_A6EA47 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 181 9e-45 UniRef50_A1ZW95 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 180 2e-44 UniRef50_C2G377 RNA polymerase ECF family sigma factor n=2 Tax=S... 179 3e-44 UniRef50_C6XVW4 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 179 3e-44 UniRef50_Q39ER9 Sigma-24 (FecI-like) n=6 Tax=Proteobacteria RepI... 179 4e-44 UniRef50_C7PJ73 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 5e-44 UniRef50_A6KXC2 RNA polymerase ECF-type sigma factor n=6 Tax=Bac... 178 6e-44 UniRef50_C7PNV1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 9e-44 UniRef50_Q6FBE7 Alternative RNAP sigma factor required for fecA ... 177 1e-43 UniRef50_Q48ML0 RNA polymerase sigma-70 family protein n=19 Tax=... 177 1e-43 UniRef50_A6EHU0 Putative ECF-type RNA polymerase sigma factor n=... 177 1e-43 UniRef50_Q2L2C6 RNA polymerase ECF-family sigma factor (Fragment... 176 2e-43 UniRef50_C6XU89 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 176 4e-43 UniRef50_A6SZM0 RNA polymerase sigma-70 factor, ECF subfamily n=... 175 6e-43 UniRef50_C6W1C1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 7e-43 UniRef50_A6T3U0 RNA polymerase sigma-70 factor, ECF subfamily n=... 174 8e-43 UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinom... 174 9e-43 UniRef50_C3K1F8 Putative iron-related RNA polymerase sigma facto... 174 1e-42 UniRef50_A7A9W6 Putative uncharacterized protein n=1 Tax=Parabac... 174 1e-42 UniRef50_B3PJT7 Probable fecI Specialized sigma subunits of RNA ... 174 1e-42 UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacter... 173 2e-42 UniRef50_C7PH14 RNA polymerase, sigma-24 subunit, ECF subfamily ... 173 3e-42 UniRef50_B3PLR0 RNA polymerase sigma factor, sigma-70 family n=1... 173 3e-42 UniRef50_A6EEU5 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 172 4e-42 UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acineto... 172 4e-42 UniRef50_C6XVT4 RNA polymerase sigma-70 factor n=3 Tax=Pedobacte... 172 5e-42 UniRef50_C2BYK0 RNA polymerase sigma factor n=1 Tax=Listeria gra... 172 5e-42 UniRef50_A5FAI1 ECF subfamily RNA polymerase sigma-24 subunit n=... 171 5e-42 UniRef50_Q2S0C7 RNA polymerase ECF-type sigma factor, putative n... 171 6e-42 UniRef50_A6SVZ7 RNA polymerase sigma-70 factor, ECF subfamily n=... 171 8e-42 UniRef50_D0TT72 Putative uncharacterized protein n=3 Tax=Bactero... 171 9e-42 UniRef50_A4BY85 RNA polymerase ECF-type sigma factor n=1 Tax=Pol... 171 9e-42 UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=... 171 9e-42 UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 171 1e-41 UniRef50_C4KZA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 171 1e-41 UniRef50_C6VZZ8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 171 1e-41 UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 1e-41 UniRef50_D1W083 RNA polymerase sigma-70 factor n=2 Tax=Prevotell... 170 1e-41 UniRef50_D0TF22 Putative uncharacterized protein n=1 Tax=Bactero... 170 2e-41 UniRef50_D2QTW1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 2e-41 UniRef50_B3PJT4 RNA polymerase sigma factor, sigma-70 family n=1... 170 2e-41 UniRef50_A6W1Y2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 169 3e-41 UniRef50_D1P6G0 RNA polymerase sigma factor, sigma-70 family n=4... 169 3e-41 UniRef50_A6SX54 Uncharacterized conserved protein n=3 Tax=Proteo... 169 4e-41 UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily ... 169 4e-41 UniRef50_A6E873 RNA polymerase sigma-70 factor, ECF subfamily pr... 169 4e-41 UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma su... 169 4e-41 UniRef50_A5FNM7 ECF subfamily RNA polymerase sigma-24 subunit n=... 168 5e-41 UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 6e-41 UniRef50_C6W0L2 Transcriptional regulator, LuxR family n=1 Tax=D... 168 6e-41 UniRef50_C6XT34 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 168 8e-41 UniRef50_C6DJA9 RNA polymerase sigma factor n=6 Tax=Enterobacter... 168 8e-41 UniRef50_C5PSA3 RNA polymerase sigma factor n=1 Tax=Sphingobacte... 168 8e-41 UniRef50_A6SXC6 RNA polymerase sigma-70 factor, ECF subfamily n=... 168 9e-41 UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma su... 168 9e-41 UniRef50_A6T181 RNA polymerase sigma-70 factor, ECF subfamily n=... 167 1e-40 UniRef50_C6XY37 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 167 1e-40 UniRef50_C2G4M9 RNA polymerase ECF family sigma factor n=2 Tax=S... 167 1e-40 UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrired... 167 1e-40 UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Coryneb... 167 1e-40 UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizob... 167 2e-40 UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex de... 167 2e-40 UniRef50_C6XVX9 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 166 2e-40 UniRef50_A6EFD9 Putative RNA polymerase ECF-type sigma factor n=... 166 3e-40 UniRef50_A6LGM3 RNA polymerase sigma factor n=2 Tax=Parabacteroi... 166 3e-40 UniRef50_C6Y0D6 RNA polymerase sigma-70 factor n=2 Tax=Pedobacte... 166 3e-40 UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacill... 166 3e-40 UniRef50_A5FKM6 ECF subfamily RNA polymerase sigma-24 subunit n=... 166 3e-40 UniRef50_C3JY07 Putative RNA polymerase sigma factor n=1 Tax=Pse... 166 3e-40 UniRef50_B7UW20 Probable sigma-70 factor, ECF subfamily n=12 Tax... 166 3e-40 UniRef50_D0MD44 RNA polymerase, sigma-24 subunit, ECF subfamily ... 166 3e-40 UniRef50_C6Y2W3 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 166 3e-40 UniRef50_D0J502 RNA polymerase, sigma-24 subunit, ECF subfamily ... 166 3e-40 UniRef50_D0MHK9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 166 3e-40 UniRef50_C1DIP0 RNA polymerase sigma factor, FecI family n=1 Tax... 165 4e-40 UniRef50_B5CYT2 Putative uncharacterized protein n=1 Tax=Bactero... 165 4e-40 UniRef50_C3QHX8 RNA polymerase ECF-type sigma factor n=7 Tax=Bac... 165 4e-40 UniRef50_A6E7V9 RNA polymerase sigma factor (Possible RNA polyme... 165 4e-40 UniRef50_D1VYX9 RNA polymerase sigma-70 factor n=1 Tax=Prevotell... 165 4e-40 UniRef50_Q88IB3 RNA polymerase sigma-70 factor, putative n=2 Tax... 165 5e-40 UniRef50_C7PJC0 Transcriptional regulator, LuxR family n=1 Tax=C... 165 5e-40 UniRef50_C6Y1F4 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 165 5e-40 UniRef50_Q88Q31 RNA polymerase sigma-70 factor, ECF subfamily n=... 165 6e-40 UniRef50_C3QPP8 RNA polymerase ECF-type sigma factor n=7 Tax=Bac... 165 6e-40 UniRef50_C4TZ61 Sigma factor, ECF subfamily n=1 Tax=Yersinia kri... 165 6e-40 UniRef50_Q82VL0 Probable sigma-70 factor, ECF subfamily n=2 Tax=... 165 6e-40 UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 165 6e-40 UniRef50_A6E6E9 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 165 6e-40 UniRef50_C9KVM7 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 165 7e-40 UniRef50_C8WQW1 RNA polymerase sigma factor n=2 Tax=Alicyclobaci... 165 7e-40 UniRef50_B4SLV1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 165 8e-40 UniRef50_C6W0P8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 164 1e-39 UniRef50_A5FID8 ECF subfamily RNA polymerase sigma-24 subunit n=... 164 1e-39 UniRef50_A6EIK6 RNA polymerase ECF-type sigma factor, putative n... 164 1e-39 UniRef50_A1ZZ70 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 164 1e-39 UniRef50_C6Y1G9 RNA polymerase sigma factor, sigma-70 family n=1... 164 1e-39 UniRef50_A4XVR2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 164 1e-39 UniRef50_B4EXQ8 ECF-family sigma factor n=7 Tax=Enterobacteriace... 164 1e-39 UniRef50_C3QAU5 RNA polymerase ECF-type sigma factor n=4 Tax=Bac... 164 1e-39 UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=... 164 1e-39 UniRef50_A6EEG5 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 163 2e-39 UniRef50_A7AI75 Putative uncharacterized protein n=2 Tax=Parabac... 163 2e-39 UniRef50_C6XUX4 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 163 2e-39 UniRef50_C7PNP3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 163 3e-39 UniRef50_A9BUB1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 163 3e-39 UniRef50_C7PPV6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 163 3e-39 UniRef50_D2QQH7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 163 3e-39 UniRef50_B0KIQ2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 163 3e-39 UniRef50_D0MF51 RNA polymerase sigma factor n=1 Tax=Rhodothermus... 162 3e-39 UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured ma... 162 4e-39 UniRef50_Q6FD19 Putative RNA polymerase sigma factor n=1 Tax=Aci... 162 4e-39 UniRef50_C3QRM6 RNA polymerase ECF-type sigma factor n=10 Tax=Ba... 162 4e-39 UniRef50_C6IQT2 RNA polymerase sigma factor n=3 Tax=Bacteroides ... 162 4e-39 UniRef50_C6CDZ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 162 4e-39 UniRef50_C1DDL3 Sigma factor, FecI family n=3 Tax=Proteobacteria... 162 4e-39 UniRef50_C6DKM4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 162 4e-39 UniRef50_UPI000174534D RNA polymerase, sigma-24 subunit, ECF sub... 162 5e-39 UniRef50_C3Q8S3 RNA polymerase ECF-type sigma factor n=8 Tax=Bac... 162 5e-39 UniRef50_Q8EN30 RNA polymerase ECF-type sigma factor n=1 Tax=Oce... 162 5e-39 UniRef50_Q4K9A6 RNA polymerase sigma-70 factor, ECF subfamily n=... 162 5e-39 UniRef50_A6LGK0 RNA polymerase sigma factor n=3 Tax=Parabacteroi... 162 5e-39 UniRef50_C6XT18 RNA polymerase sigma-70 factor n=4 Tax=Bacteroid... 162 5e-39 UniRef50_D0J6Z4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 161 6e-39 UniRef50_C1DIF0 RNA polymerase sigma factor, FecI family n=1 Tax... 161 6e-39 UniRef50_A6LIX1 RNA polymerase ECF-type sigma factor n=8 Tax=Bac... 161 7e-39 UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacte... 161 7e-39 UniRef50_D1PZC2 DNA-directed RNA polymerase sigma subunit RpoE n... 161 8e-39 UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily ... 161 8e-39 UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium El... 161 8e-39 UniRef50_Q2RUF6 Sigma-24 (FecI) n=2 Tax=Proteobacteria RepID=Q2R... 161 8e-39 UniRef50_C6IHS3 RNA polymerase ECF-type sigma factor n=2 Tax=Bac... 161 9e-39 UniRef50_A7M626 RNA polymerase sigma factor n=5 Tax=Bacteroides ... 161 9e-39 UniRef50_A7ALM4 Putative uncharacterized protein n=1 Tax=Parabac... 161 1e-38 UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 161 1e-38 UniRef50_A6SZL5 RNA polymerase sigma-70 factor, ECF subfamily n=... 161 1e-38 UniRef50_C5PUA0 RNA polymerase ECF family sigma factor n=1 Tax=S... 160 1e-38 UniRef50_Q2S652 Possible sigma-70 factor, ECF subfamily, putativ... 160 1e-38 UniRef50_A5UPH8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 160 1e-38 UniRef50_D0S2J0 Putative uncharacterized protein n=1 Tax=Acineto... 160 1e-38 UniRef50_C6XBX6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 160 2e-38 UniRef50_A6EGM3 Putative RNA polymerase ECF sigma factor n=1 Tax... 160 2e-38 UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=S... 160 2e-38 UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 160 2e-38 UniRef50_C9KS81 RNA polymerase sigma factor n=1 Tax=Bacteroides ... 160 2e-38 UniRef50_C4ZMF7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 160 2e-38 UniRef50_C6Y3B4 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 160 2e-38 UniRef50_Q21KS5 Sigma-70, region 4 type 2 n=1 Tax=Saccharophagus... 160 2e-38 UniRef50_A9DTH0 Putative RNA polymerase sigma factor n=2 Tax=Fla... 160 2e-38 UniRef50_D1CEA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 160 2e-38 UniRef50_C9KS29 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 160 2e-38 UniRef50_C2FYM2 RNA polymerase ECF family sigma factor n=2 Tax=S... 160 3e-38 UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1... 160 3e-38 UniRef50_C1DFE8 ECF sigma factor, FecI family n=5 Tax=Gammaprote... 160 3e-38 UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 159 3e-38 UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter... 159 3e-38 UniRef50_B9P6N4 Predicted protein n=8 Tax=cellular organisms Rep... 159 3e-38 UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family prote... 159 3e-38 UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus S... 159 3e-38 UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 159 3e-38 UniRef50_C6XSL3 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 159 4e-38 UniRef50_B0KJM4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 159 4e-38 UniRef50_A7LZK7 Putative uncharacterized protein n=5 Tax=Bactero... 159 4e-38 UniRef50_D0THQ1 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 159 4e-38 UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 159 4e-38 UniRef50_B0KPG3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 159 4e-38 UniRef50_C7PMZ3 RNA polymerase sigma factor n=1 Tax=Chitinophaga... 159 5e-38 UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobact... 159 5e-38 UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6... 158 5e-38 UniRef50_C6VZK9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 5e-38 UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 5e-38 UniRef50_Q4KBG5 RNA polymerase sigma-70 factor, ECF subfamily n=... 158 6e-38 UniRef50_A8ICQ0 RNA polymerase sigma-70 factor n=1 Tax=Azorhizob... 158 6e-38 UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 6e-38 UniRef50_D0TR41 RNA polymerase sigma-W factor n=4 Tax=Bacteroide... 158 6e-38 UniRef50_A6EI30 RNA polymerase ECF-type sigma factor n=2 Tax=Ped... 158 6e-38 UniRef50_B1JF11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 7e-38 UniRef50_A5FEU4 ECF subfamily RNA polymerase sigma-24 subunit n=... 158 7e-38 UniRef50_A9C155 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 8e-38 UniRef50_C6XYS8 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 158 8e-38 UniRef50_A5W6M8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 9e-38 UniRef50_A6LBK1 RNA polymerase ECF-type sigma factor n=25 Tax=Ba... 158 1e-37 UniRef50_D0MG02 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 1e-37 UniRef50_C7PQG7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 1e-37 UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor... 158 1e-37 UniRef50_C7PFD0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 158 1e-37 UniRef50_C6XW61 RNA polymerase sigma-70 factor n=1 Tax=Pedobacte... 157 1e-37 UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistip... 157 1e-37 UniRef50_A6EEH0 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 157 1e-37 UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 157 1e-37 UniRef50_C6VTF7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 157 1e-37 UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 157 1e-37 UniRef50_A6EK66 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 157 2e-37 UniRef50_A8FB47 DNA-directed RNA polymerase sigma subunit n=2 Ta... 157 2e-37 UniRef50_A7LYM5 Putative uncharacterized protein n=5 Tax=Bactero... 157 2e-37 UniRef50_C7PEI1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 157 2e-37 UniRef50_D2QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 2e-37 UniRef50_C3QVX7 RNA polymerase ECF-type sigma factor n=4 Tax=Bac... 156 2e-37 UniRef50_A1BCE5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 2e-37 UniRef50_D1ST93 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 3e-37 UniRef50_C7PNR1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 3e-37 UniRef50_B9XGS8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 3e-37 UniRef50_Q52208 PupI protein n=1 Tax=Pseudomonas putida RepID=Q5... 156 3e-37 UniRef50_C5SQB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 3e-37 UniRef50_C6W720 RNA polymerase, sigma-24 subunit, ECF subfamily ... 156 4e-37 UniRef50_C2FS22 RNA polymerase sigma-70 factor, ECF subfamily pr... 156 4e-37 UniRef50_Q7W4H7 ECF-family sigma factor n=2 Tax=Bordetella RepID... 156 4e-37 UniRef50_B0KMD3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 155 4e-37 UniRef50_C6I4J3 RNA polymerase ECF-type sigma factor n=5 Tax=Bac... 155 4e-37 UniRef50_Q4KBX1 RNA polymerase sigma-70 factor, ECF subfamily n=... 155 4e-37 UniRef50_A9WPF4 RNA polymerase sigma-E factor n=1 Tax=Renibacter... 155 4e-37 UniRef50_C6ITD4 RNA polymerase ECF-type sigma factor n=7 Tax=Bac... 155 5e-37 UniRef50_B0C3Y4 RNA polymerase sigma-24 subunit n=1 Tax=Acaryoch... 155 5e-37 UniRef50_C1AAJ5 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 155 5e-37 UniRef50_C7PU34 RNA polymerase, sigma-24 subunit, ECF subfamily ... 155 6e-37 UniRef50_Q4K9E5 RNA polymerase sigma-70 factor, ECF subfamily n=... 155 6e-37 UniRef50_C7PPF3 Transcriptional regulator, LuxR family n=1 Tax=C... 155 6e-37 UniRef50_Q1GQ36 RNA polymerase, sigma-24 subunit, ECF subfamily ... 155 6e-37 UniRef50_C2FTY9 RNA polymerase sigma factor n=1 Tax=Sphingobacte... 155 6e-37 UniRef50_D2QL29 RNA polymerase, sigma-24 subunit, ECF subfamily ... 154 7e-37 UniRef50_C1DNR4 ECF sigma factor, FecI family n=14 Tax=Pseudomon... 154 7e-37 UniRef50_A0LEX1 Transcriptional regulator, Fis family n=1 Tax=Sy... 154 8e-37 UniRef50_D0TMA3 FrrE n=4 Tax=Bacteroides RepID=D0TMA3_9BACE 154 8e-37 UniRef50_C6XYK7 RNA polymerase sigma factor, sigma-70 family n=1... 154 9e-37 UniRef50_Q2L0R0 RNA polymerase sigma factor n=1 Tax=Bordetella a... 154 9e-37 UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 154 1e-36 UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 154 1e-36 UniRef50_C6W0H1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 154 1e-36 UniRef50_C6VSP5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 154 1e-36 UniRef50_D1W7B2 RNA polymerase sigma-70 factor n=2 Tax=Prevotell... 154 1e-36 UniRef50_B7KZS3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 154 1e-36 UniRef50_Q07TI3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 153 2e-36 UniRef50_C6I530 RNA polymerase ECF-type sigma factor n=15 Tax=Ba... 153 2e-36 UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 153 2e-36 UniRef50_A6LES7 RNA polymerase ECF-type sigma factor n=4 Tax=Bac... 153 2e-36 Sequences not found previously or not previously below threshold: UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily ... 161 8e-39 UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily ... 160 2e-38 UniRef50_C7PDJ2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 157 1e-37 UniRef50_A6LCM4 RNA polymerase ECF-type sigma factor n=6 Tax=Bac... 156 3e-37 UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacte... 156 3e-37 UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 154 9e-37 >UniRef50_P23484 Probable RNA polymerase sigma factor fecI n=27 Tax=Enterobacteriaceae RepID=FECI_ECOLI Length = 173 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD Sbjct: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG Sbjct: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL Sbjct: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 >UniRef50_C4XCZ5 RNA polymerase sigma factor n=9 Tax=Enterobacteriaceae RepID=C4XCZ5_KLEPN Length = 173 Score = 200 bits (511), Expect = 1e-50, Method: Composition-based stats. Identities = 154/173 (89%), Positives = 161/173 (93%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MSD ATT ASLT ESLYG+HH WLKSWLTRKLQSAFDADDIAQDTFLRVM + TLSTIRD Sbjct: 1 MSDSATTIASLTLESLYGSHHDWLKSWLTRKLQSAFDADDIAQDTFLRVMGNNTLSTIRD 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PRSFLCTIAKRVMVDLFRRN+LEKAYLEMLALMPE APSPEE ESQLETLQL+D MLDG Sbjct: 61 PRSFLCTIAKRVMVDLFRRNSLEKAYLEMLALMPERLAPSPEEHESQLETLQLIDRMLDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L GKTREAFLLSQLDGLTYSEIA KLGVS+SSVKKYVAKA+EHCLLFRLE+GL Sbjct: 121 LKGKTREAFLLSQLDGLTYSEIALKLGVSVSSVKKYVAKAIEHCLLFRLEHGL 173 >UniRef50_A3HXR4 Putative RNA polymerase ECF-type sigma factor n=1 Tax=Algoriphagus sp. PR1 RepID=A3HXR4_9SPHI Length = 193 Score = 195 bits (496), Expect = 6e-49, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 1/168 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD-PRS 63 + E L+ ++ L + L +A+++ Q F++ I+ +S Sbjct: 12 IKSGDEKALEMLFKEYYQPLCRYANSYLPDPDEAEEVVQSCFIKFWEKREKIDIQSSVKS 71 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L I + ++ + +++ Y EM+ E + + +E+ E + + + L Sbjct: 72 YLYQIIRNACLNEIKHQRVKRNYSEMVIQKGEDFSGASDEKTIHDELEDKIRNAIQKLPQ 131 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + R F +S+ + L Y EIA +L +SI +V+ + KA++ + EY Sbjct: 132 QCRVIFTMSRFEELKYQEIADQLNISIKTVENQMGKALKMMRIQLQEY 179 >UniRef50_C6W4E3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W4E3_DYAFD Length = 206 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 1/171 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-D 60 FE + T++ L ++ L+ +++++ Q FL + I Sbjct: 18 VSAIRRGDEQAFEQTFRTYYQRLCNYACTMLKDEEESEEVVQTVFLTIWEKREDLEITLS 77 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 +S+L ++ F+ + +A+ + G S E E + ++ + Sbjct: 78 LKSYLYRAVHNHCLNRFKHATVREAHKDYTMYFSSGSYDSVTEVIHAGELEERIERAVST 137 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + ++AF LS+ + L Y EIA +LG+SI +V+ + KA++ +Y Sbjct: 138 LPEQCQKAFRLSRFEELKYQEIADQLGISIKTVENQIGKALKILRAELADY 188 >UniRef50_Q1GXU3 Sigma-24 (FecI-like) n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXU3_METFK Length = 179 Score = 190 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 65/154 (42%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKRV 72 E LY H GWL +WL KL + A D+ QDTF+RVM + + ++ + PR++L +IA+ + Sbjct: 22 EQLYSHHRGWLHNWLRGKLGCSEQAADLVQDTFIRVMAARSNIANLDQPRAYLSSIARNL 81 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 ++D +RR LE+AYL ++L+PE PSPE+ E L+ +D +L L TR+ FLLS Sbjct: 82 VIDHWRRKELEQAYLAAISLLPEQEVPSPEQSLLVFEALEQVDKVLQSLPPATRQVFLLS 141 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 QLDG+TY+ IA +L S+ ++K+++ KA C+ Sbjct: 142 QLDGMTYAAIAEQLDCSVPTIKRHMHKAFFACMQ 175 >UniRef50_A9BWH7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Proteobacteria RepID=A9BWH7_DELAS Length = 182 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 111/168 (66%), Gaps = 3/168 (1%) Query: 5 ATTTASLTF--ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDP 61 +++ F SLY HH WL+S L ++L + DA D+AQDTF+R++ S IR+P Sbjct: 15 CAASSAPAFSVHSLYQNHHPWLESLLRKRLGNRDDAADLAQDTFVRLLRSPLPQQDIREP 74 Query: 62 RSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 R +L TIA+ ++ DLFRR LE++YL+ LA +P+ APSPEE+ +TL +D ML GL Sbjct: 75 RRYLATIARGLVADLFRRRTLEQSYLDYLAQLPQSLAPSPEEQAIVQQTLLDVDRMLQGL 134 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 K REAF+L+Q + L+Y EIA +LGVS+ +V Y+ +A+EHC L Sbjct: 135 PPKVREAFVLAQFEELSYPEIAQRLGVSLRTVSNYLTRAMEHCCLVLA 182 >UniRef50_Q4KKE1 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas RepID=Q4KKE1_PSEF5 Length = 179 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 73/165 (44%), Positives = 109/165 (66%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 +ATT + LY HHGWL+ WL ++L A D+AQDTFLR+++S ++ RS Sbjct: 12 QATTDGNAQLHRLYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESRS 71 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L IA+ ++VD +RR +E+AYLE +A +PE PS E R LETL +D+MLD + Sbjct: 72 YLAQIARNLVVDQWRRARIERAYLESIAHLPEPQTPSLESRALILETLMQIDAMLDRMPD 131 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 K R+AF++SQ +GL Y++IA +L VS+SSV+KY+ +A++ C Sbjct: 132 KVRQAFVMSQFEGLGYAQIAERLEVSVSSVQKYMTRAIQACYQVL 176 >UniRef50_D0TET6 RNA polymerase sigma factor n=2 Tax=Bacteroides RepID=D0TET6_9BACE Length = 395 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 1/169 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRS 63 FE+L+ ++ + ++ L A+D+ Q+ FL++ + ++ + Sbjct: 11 LKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDA 70 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L TIA+ ++ L + E L EER + ++S+++ L Sbjct: 71 YLFTIARNLVYKETENRLLSEKLTESLQRQLSDADSLTEERIDAESLREYINSLIEELPP 130 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 RE F LS+ + L+Y EIA +L +S +V+ V +A+ G Sbjct: 131 SRREIFRLSRHEHLSYREIAERLSISEKTVETQVNRALRFLRDRLSSDG 179 >UniRef50_D2QFM1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QFM1_9SPHI Length = 213 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 1/171 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-D 60 + FES++ ++ L + + + +A++ Q FL V I Sbjct: 23 LSAISNGNERAFESVFRQYYAPLCRYARQLVPDPDEAEEEVQAMFLTVWEKRENLNITIS 82 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 +++L ++ + ++ + E + E SP + E L + Sbjct: 83 LKAYLYRAVHNRCLNRIKHISVRDEHREHSRYLGESLVESPMQTLLGDELSDRLQRTIQK 142 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + R AF LS+ D L Y EIA +LG+SI +V+ + KA+ EY Sbjct: 143 LPEQCRLAFTLSRFDELKYGEIADQLGISIKTVENQIGKALRILRTELSEY 193 >UniRef50_C6Y3R1 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y3R1_PEDHD Length = 194 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-R 59 + D + F +Y + + + L DA D+AQ+ F + T Sbjct: 12 LLDCLKSGDQQAFAEIYNRYWKVMYFHALKMLGDEDDAKDLAQELFATLWTKGTNLPFNS 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L A+ +++L ++ + + YL L+ E E+ + E L +++ + Sbjct: 72 NLSGYLYITARNKIINLIQQKKVRRDYLSALSAFAEEAGNGTVEQIDEKELLLIVEKEIQ 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L K R+ F LS+ L++ EIA +LG+S +VKK + A+ L Sbjct: 132 NLPVKMRQVFELSRKQFLSHKEIATQLGISDKTVKKQIGYAIRMIKLKL 180 >UniRef50_A6EA47 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EA47_9SPHI Length = 201 Score = 181 bits (461), Expect = 9e-45, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 1/171 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 + + F +LY + L + + + A ++ QD F+++ E L + Sbjct: 15 LLGHLASGDQHAFTTLYRNYSSRLFAKINHLVNDDEIAKELLQDVFMKLWSQREKLDPTK 74 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +SFL TIA ++ D FR+ A +K Y + EE E+LQL+ +D Sbjct: 75 SIKSFLFTIAVNLVYDHFRKLAKDKKYARSILQTAVDYYSHTEEEMHSKESLQLIRQAID 134 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L + R+ FL+ ++DG +Y ++A++L +S S+V+ ++ K + + L+ Sbjct: 135 QLPPQRRQIFLMCKIDGKSYEQVANQLSISPSTVRDHIVKGNKIVRDYLLK 185 >UniRef50_A1ZW95 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZW95_9SPHI Length = 204 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 3/174 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + + L+ T + L + R + + +DI QD FL++ I+ Sbjct: 13 LLTWLKEGNEKVIQILFDTFYVSLCKTVNRIVHNTTITEDIVQDVFLKIWQKRGDLNIQI 72 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGA--PSPEERESQLETLQLLDSM 117 +++L +A + R+ + + A E+ E ++ Sbjct: 73 SLKAYLHKMAINAALSHLRKKYNTSSIDDASPQQISKHAFKEVATEKMEFKELELQVNEA 132 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 ++ L K RE F+LS+ + L+Y EIA ++G+S +V+ ++KA++H Y Sbjct: 133 INELPPKCREVFILSRYEELSYKEIAQQMGISPKTVENQMSKALKHLRKKLAAY 186 >UniRef50_C2G377 RNA polymerase ECF family sigma factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2G377_9SPHI Length = 202 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 88/167 (52%), Gaps = 1/167 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIRDPRS 63 + + +E L+ + + + + ++S A+DI Q+ F++V + L I++ ++ Sbjct: 14 LSEGSQNAYELLFSRYWTHVFAVVRLLVKSQEQAEDITQEIFVKVWNRRKDLEEIKNIKA 73 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L TIA+ +D R+ L LE + A +P +R E ++ + L Sbjct: 74 YLYTIARNTTLDHLRKKVLVTENLEQMIHYFTDHALTPVQRIEYKELEDIISKGIATLPS 133 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 K +E F++S++DGL++ EIA +L +S++S K YV +A++ L+ + Sbjct: 134 KVKEVFVMSRIDGLSHEEIAARLDISVTSSKTYVVRALKLLRLYMSK 180 >UniRef50_C6XVW4 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVW4_PEDHD Length = 202 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 87/172 (50%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + R T F +Y + + + + AD++ Q+ F+R+ ++ + + Sbjct: 12 LLVRLKTGDETAFNGIYEAYSKPMYLKILSMTKDKDVADELLQELFIRLWDNKEKIIPGK 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +S+L TI + ++ + FR+ A + + +E + L + EE E+ LL + +D Sbjct: 72 SFQSYLYTITRNLVYNYFRKVASDNSLIEQMLLRGTDHYLNAEEVLLSKESAALLKNAID 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L+ + + F L ++DG +Y E++ LG+S+++V ++ K+++ + +++ Sbjct: 132 QLSPQRKMVFELCKIDGKSYDEVSKLLGISVATVNSHITKSMQLIKAYLIKH 183 >UniRef50_Q39ER9 Sigma-24 (FecI-like) n=6 Tax=Proteobacteria RepID=Q39ER9_BURS3 Length = 172 Score = 179 bits (455), Expect = 4e-44, Method: Composition-based stats. Identities = 79/162 (48%), Positives = 104/162 (64%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 + A F +LY HHGWL+ WL +KL +A DA D+A DT+LRV+ S T D R +L Sbjct: 6 SHAQRGFRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDSRRYLT 65 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 IA +++DL+RR +E AYL+ + +PE APSPE R +E L +D+MLD L R Sbjct: 66 QIANGLVIDLYRRRHIESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRLPANAR 125 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 A LL +LDGLTY EIA +LGVS+SSV+KYVA A+ C Sbjct: 126 TALLLCKLDGLTYREIAAQLGVSVSSVEKYVASALRACYAAL 167 >UniRef50_C7PJ73 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJ73_CHIPD Length = 196 Score = 178 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 1/173 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + ++ F+++Y + + L + L S A ++ Q+ F+ V T + R Sbjct: 11 LLEKMAAGDRDAFQAIYYHYAPRIYGKLLKLLHSEDLATELLQEVFIVVWQKHTVIDPNR 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 RS+L IA + +DLFR+ L L EER Q E LL +D Sbjct: 71 SFRSYLFKIADNLAIDLFRKANRSTQLLNRLLEASIDHYTHTEERLEQKENAFLLQQAVD 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L + + F L +L+G ++ E++ LG+S S+V ++ KA + ++ Sbjct: 131 ALPPQRKLVFTLCKLEGKSHDEVSLLLGISPSTVNNHIVKATRFLREYLADHP 183 >UniRef50_A6KXC2 RNA polymerase ECF-type sigma factor n=6 Tax=Bacteroides RepID=A6KXC2_BACV8 Length = 200 Score = 178 bits (453), Expect = 6e-44, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-R 59 + + + F L+ + + + ++ A+DI QD FL V + I + Sbjct: 11 LIRKLINGDKIAFSHLFSFYKSQVLYYCVHFVKDKEIAEDITQDIFLTVWEKKEDIRIEQ 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +FL TIA+ + D+FR + E L E+ + +L+ L+ Sbjct: 71 SFSAFLYTIARNRIYDIFRSLSARSVLYEKLMEQAIDYVDDVEKSLEEKNIKELIAQALE 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L+ + RE F LS+ GL++ EIA +LG+S+ +V+ ++ A+E + Sbjct: 131 QLSPRQREIFELSRNRGLSHKEIAEQLGLSVYTVQDHIKNALEKIRAYL 179 >UniRef50_C7PNV1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PNV1_CHIPD Length = 223 Score = 178 bits (452), Expect = 9e-44, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 3/171 (1%) Query: 2 SDRATTTASLTF-ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + F E+L+ T+ ++ + R +QS A+D+AQD F+++ Sbjct: 35 LQQLLMENEDAFMEALFRTYFSFVCKTIYRIVQSNATAEDLAQDVFIKIWNRRAELHQVY 94 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 +++L A + +D +N ++ M M A + +T + + +D Sbjct: 95 FKAYLHRAAINMALDYLDKNKRRGVHMPMEEYMEPVQAAPAGQSLH--QTTRHIQQAIDK 152 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L K RE F+LS+ + L+Y EIA L +S+ +V+ + A++ + +Y Sbjct: 153 LPEKCREIFILSRYEELSYREIATTLNISVKTVENQMMTALKKLRVSLQDY 203 >UniRef50_Q6FBE7 Alternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FBE7_ACIAD Length = 161 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 105/155 (67%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY HH W+ +WL R+L ++ DA D+AQDTF+RV+ ++L I PR++L T+AK +M++ Sbjct: 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 F R +E+AYLE+LA PE PSPE+R +ETL + +LD L + R+ FL +QL+ Sbjct: 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + Y +IA + +S+S+VK+++ KA HCL L+ Sbjct: 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156 >UniRef50_Q48ML0 RNA polymerase sigma-70 family protein n=19 Tax=Proteobacteria RepID=Q48ML0_PSE14 Length = 198 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 75/155 (48%), Positives = 104/155 (67%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 ESLY H+ WL +WL R+L A D+AQDTF++V+ + I +PR+FL TIAKRV+ Sbjct: 44 ESLYRAHNTWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTQQIVEPRAFLTTIAKRVL 103 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 + +RR LE AY + LA +PE APS EER LETL LD +LDGL + AFL+SQ Sbjct: 104 CNHYRRQDLEHAYYQALAELPECVAPSEEERAIILETLVELDQLLDGLPVLVKRAFLMSQ 163 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 +DGL++ +IA +LG+SI++VK+++ KA C Sbjct: 164 VDGLSHGQIAAELGISIATVKRHLNKAALRCYFAL 198 >UniRef50_A6EHU0 Putative ECF-type RNA polymerase sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHU0_9SPHI Length = 197 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 1/174 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 ++ F +Y + + + + + L+ +A D+ Q+ F + + +L Sbjct: 15 LTALLKEADEQAFTEIYNRNWKLIYAHVYKMLRDEDEAKDVVQEVFGNLWIKAASLKNTL 74 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L T A+ + DL +N + YL +A + + +++L+ + Sbjct: 75 NISGYLYTAARNKVFDLIEKNKVRSDYLGEIASFVSDPLNEKVDHIDEKRIMEILEREIQ 134 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L K +E F LS+ + L++ EIA KL +S +VKK V A++ + G+ Sbjct: 135 KLPPKMKEIFELSRKENLSHKEIAGKLNISEQTVKKQVQNALKVIKPKLNDMGI 188 >UniRef50_Q2L2C6 RNA polymerase ECF-family sigma factor (Fragment) n=4 Tax=Bordetella RepID=Q2L2C6_BORA1 Length = 169 Score = 176 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 103/156 (66%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAK 70 + + LY H WL WL RKL + A+D+AQD F+R++ + R+FL TIA+ Sbjct: 10 ASVDGLYRQHRSWLMGWLRRKLGGSDHAEDMAQDVFIRIIQGRKQVDVVQARAFLTTIAR 69 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 +++D +RR ALE AY + LA +P+ P PE R +++L +LD ML GL+ + REAF+ Sbjct: 70 GMLIDHWRRAALEAAYRDYLASLPQVSEPGPEARIEVMQSLAVLDRMLAGLSPRAREAFM 129 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 LSQ+DGLTY EIA +LGVS+SSV++Y+ KA+ C Sbjct: 130 LSQIDGLTYPEIAVRLGVSVSSVQQYMVKAMSACYE 165 >UniRef50_C6XU89 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XU89_PEDHD Length = 202 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 77/172 (44%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + + L F +Y + + ++ +S A++I Q+ F+R+ + Sbjct: 14 LLIKLRNGDQLAFAEIYNLYRSKMYTYACNLCKSTETAEEIVQEVFVRIWQKKDQINTEL 73 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +++ I +++ ++ + +K E + + E+ + E L+ D + Sbjct: 74 NFAAYIKKITLNHVLNHLKKISRDKQLQEEVFHYIATIRNTTEDHLLEKELLKTYDEAIA 133 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + + + +S+ + +T+ +IA KL +S ++VK ++ +A + + ++ Sbjct: 134 LLPPQKKLIYQMSRNEEMTHEQIAEKLNISKNTVKNHMVEATKFIRSYVSKH 185 >UniRef50_A6SZM0 RNA polymerase sigma-70 factor, ECF subfamily n=4 Tax=Proteobacteria RepID=A6SZM0_JANMA Length = 186 Score = 175 bits (445), Expect = 6e-43, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 M +SLY H+GWL WL +KL A D AQDTF R++ L+T++ Sbjct: 10 MPPATHHNQHDALDSLYSEHYGWLYGWLRKKLACPHSAADFAQDTFFRLLSVPFELTTLQ 69 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLAL-MPEGGAPSPEERESQLETLQLLDSML 118 PR++L T A R+M+D RR +E+AYLE LAL E + SPE+ +ETL L+ ML Sbjct: 70 TPRAYLTTTATRLMIDETRRRKVEQAYLEALALLQDEVYSVSPEQHLETVETLTLIARML 129 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + L K R+AF+LS+LD L+Y EIA +LGVS S VK+Y+A+A+ HC Sbjct: 130 EDLPEKPRQAFMLSRLDNLSYPEIAMRLGVSASMVKQYIARAMVHCYQ 177 >UniRef50_C6W1C1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W1C1_DYAFD Length = 193 Score = 175 bits (444), Expect = 7e-43, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + L F +Y + G L R L + + D+ Q+ F + T ++ Sbjct: 12 LLALIAEGDELAFAEVYRRYKGVLFLHARRILGNDEEGKDVLQELFTTLWTRRTSIDLKT 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + ++L + + D+ +E Y+ LA E G +++ + E +L++ + Sbjct: 72 NLCAYLYASVRNRVFDIIAHRKVEARYIASLAAFIEQGEYVTDQQVQEKELRELIEQEIA 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L K RE F LS+ + L+Y EIA +L +S +VKK V A+ Sbjct: 132 LLPPKMREVFELSRKEELSYKEIADQLHISDKTVKKQVNNALHILREKL 180 >UniRef50_A6T3U0 RNA polymerase sigma-70 factor, ECF subfamily n=10 Tax=Proteobacteria RepID=A6T3U0_JANMA Length = 184 Score = 174 bits (443), Expect = 8e-43, Method: Composition-based stats. Identities = 78/158 (49%), Positives = 112/158 (70%), Gaps = 3/158 (1%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV---SETLSTIRDPRSFLC 66 +LY HHGWL WL +KL A +A DIAQDTFLR++ + +R+PR++L Sbjct: 22 QQQIHTLYSNHHGWLFGWLRKKLGCAHNAADIAQDTFLRILTAQDKRSDLDLREPRAYLT 81 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 T+A RV+++ +RR +LE+AYLE LAL+P+ AP+PE+R LETL +D+MLD L K R Sbjct: 82 TVAGRVLLNHYRRLSLERAYLEALALVPDMYAPAPEDRLIILETLHEIDAMLDALPHKAR 141 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 AFLL+Q +GL+Y+EI+ +L VS+ +VK+Y+A+A E C Sbjct: 142 TAFLLAQFEGLSYAEISVRLDVSVRTVKRYMAQAFEEC 179 >UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinomycetales RepID=A0QCH1_MYCA1 Length = 424 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 4/171 (2%) Query: 6 TTTASLT---FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPR 62 T ++ L H + R + DA+D+ Q+TF+RV S Sbjct: 71 ATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFE 130 Query: 63 SFLCTIAKRVMVDLFRRNAL-EKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 +L I + +D+ RR + L P+PEE L + LD L Sbjct: 131 GWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLGPDLQAALDSL 190 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + R A +L ++GL+Y EI LGV + +V+ + + + + + Sbjct: 191 PPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241 >UniRef50_C3K1F8 Putative iron-related RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K1F8_PSEFS Length = 172 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 66/163 (40%), Positives = 105/163 (64%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 ++ + +++Y HH WL WL KL +A DA D+A DTF+R++ + I +PR +L Sbjct: 8 SSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQIVEPRDYLA 67 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 TIA+ +++D +RR+A+E+AY + LA PE A S E++ LETL +D L L + R Sbjct: 68 TIARGLVIDRYRRHAIEQAYKQTLAERPEANAISEEDKAIILETLVAVDKALSALGERAR 127 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 F+LSQ++GLTY +IA +L VS+++VKK++ +A+ C L Sbjct: 128 RIFMLSQIEGLTYQQIADQLQVSLTTVKKHMIRALTECSLIMA 170 >UniRef50_A7A9W6 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7A9W6_9PORP Length = 184 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 79/166 (47%), Gaps = 2/166 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRD 60 + F+ LY + LK +LT +++ +A D+ QD F ++ + +S + Sbjct: 10 LEELGKGDHKAFDMLYIQYSPRLKHFLTGFIKNRDEASDMTQDIFYKIWTNRETISKVDS 69 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 +++L +A+ ++ D + + +E+ Y + EE E L+D ++ Sbjct: 70 FKAYLFRMARNMIYDYYEHSLIEENYQQKEQRRS-TYDDLIEEELYARELSLLIDIAVEK 128 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + + R F++S+ DGL+ EIA +L +S +V+ ++ +A+ Sbjct: 129 MPPQRRNIFIMSRKDGLSNEEIAQRLNISKRTVENHMTQALAELRK 174 >UniRef50_B3PJT7 Probable fecI Specialized sigma subunits of RNA n=2 Tax=Proteobacteria RepID=B3PJT7_CELJU Length = 170 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 99/158 (62%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 LY HHGWL +WL R++ + +A D+AQDT++R++ S + R +L IAK + Sbjct: 9 LTRLYSDHHGWLYAWLRRRMGCSHNAADLAQDTYVRLLNSGRFPSQDQARPYLLQIAKGL 68 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 ++D RR +E+AYL+ LA PE APSPEE +E L +DS L L RE FLLS Sbjct: 69 VIDRHRRRLIEQAYLDALASQPETLAPSPEETALVVEVLVRIDSALARLKPVVRETFLLS 128 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + +GLTY EIA +L +++++V+KY+ A++ C+ + Sbjct: 129 RFEGLTYREIALRLDIAVATVRKYMLMAIQSCMSAVTD 166 >UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacteria RepID=A7HRP1_PARL1 Length = 218 Score = 173 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 3/171 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-- 58 + L H + + R L S DA+D+AQ+ FLRV + Sbjct: 35 LVAAVALGDEAACRELMNRHLPRITALGRRMLGSQADAEDVAQEVFLRVWTNAGKWEPGR 94 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L +A + +D R+N ++ + P P P+ R Q E + +++ L Sbjct: 95 AQFSTWLHRVATNLCLDRLRKNRGGTEDIDAIPE-PASEEPGPDRRLEQSELAERVEAAL 153 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L + R A +LS GLT E A LG+++ +V+ +++A Sbjct: 154 QALPERQRAAIVLSHYQGLTNIEAAEILGITVEAVESLLSRARRQLRGSLA 204 >UniRef50_C7PH14 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PH14_CHIPD Length = 188 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 2/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + + F +Y ++ L ++ + ++S ++I Q+TF R+ + + Sbjct: 11 LFRQIGEGNEIAFRKVYYHYYRQLYGFVLKAVKSDPVTEEIVQETFARLWENRAALGEKG 70 Query: 61 PRS-FLCTIAKRVMVDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSML 118 + +L +A + D R+ A E Y +L+ P E A + + +++ LL + Sbjct: 71 YSAPWLFRVAANLSFDYMRKAAHEAKYFNLLSASPGEPSANNVADYIEGVQSNHLLHEAI 130 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 D L + R F LS+L GL++ EI+ L +S ++VK + A++ F + Sbjct: 131 DSLPPQRRTIFRLSRLKGLSHQEISQHLNISENTVKNQLVTALKAVRQFMND 182 >UniRef50_B3PLR0 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PLR0_CELJU Length = 172 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 7/163 (4%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLR---VMVSETLSTIRDPRSFLCTIA 69 FE ++ HH L+ +L R++ A D+ QDTF+R + I+ R++L IA Sbjct: 8 FEDVFKEHHKELEQFLRRQVNDPDMAADLVQDTFIRFKPLYEKP--PGIQKVRAYLFRIA 65 Query: 70 KRVMVDLFRRNALE--KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 + +++D FRR + + E + PE R + + L+ + + +D L + R+ Sbjct: 66 RNLVIDHFRREQIRCTDSVPEDILDEIPTEVAGPEVRAASQQRLENIRAAVDQLPPRCRD 125 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 F++S++ G+T +EI L +S +V + KA++ E Sbjct: 126 VFIMSRVQGMTLAEIGLALNISPKTVFSHFTKALQLLKSQLDE 168 >UniRef50_A6EEU5 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEU5_9SPHI Length = 196 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 1/165 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 F ++ + L ++ R L++ A+++ DT + V ++ P + Sbjct: 13 ALKAGDESAFRKIFDLNFRKLYTFSFRLLKNKEQAEEVVHDTLMNVWMNRDRINPDFPIA 72 Query: 64 -FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +L TI +R+ ++ R+ A + ++ L L E + EE + + + ++ L L Sbjct: 73 PYLYTITRRLALNALRQIATSQKAIDQLWLNMEKVSNDTEESILKEDLQRFTEAALVNLP 132 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + ++ F +S+ DGL Y EIA KL +S ++VK ++ A++ + Sbjct: 133 PQQQQIFRMSRFDGLNYDEIAEKLNISRNTVKNHLVAALKTLRIH 177 >UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNT9_9GAMM Length = 189 Score = 172 bits (437), Expect = 4e-42, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 99/163 (60%), Gaps = 3/163 (1%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKRV 72 + LY H GWL WL +K+ S+ A D+ QDTF++++ + L +++P+++L +IAK + Sbjct: 25 DELYRNHSGWLHHWLRKKIGSSEQAADLVQDTFIKILQTRDELLGVKEPKAYLTSIAKNL 84 Query: 73 MVDLFRRNALEKAYLEMLALMP--EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 ++D RR +E+AYL+ L+ M SPEE+ ++ + L L+ ++ K ++AF+ Sbjct: 85 LIDQVRRKRIEQAYLDGLSEMEYMLDAVISPEEQVQIIQAIHQLCKALEAVSEKAQQAFI 144 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L L+G T+ E A KLGVS ++KY+A + C R++ + Sbjct: 145 LHYLEGYTHKETAEKLGVSTKMIQKYLASCLVQCYQTRMDMDV 187 >UniRef50_C6XVT4 RNA polymerase sigma-70 factor n=3 Tax=Pedobacter RepID=C6XVT4_PEDHD Length = 196 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 81/174 (46%), Gaps = 1/174 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 + R F ++ + ++ + + +S A +I QD FL++ E + ++ Sbjct: 12 LLARIAMGDQRAFTEIFDFYQRYVYDYGRKLTKSEDQASEIVQDVFLKIWLNREKFNEVK 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + ++L + + +++ R+ A + L + S ++ E+ ++L ++ Sbjct: 72 NFGAYLNRVVRNHSINVIRKLAQDARSATQLKINTLESDNSTDKILDYNESNRILTQAVE 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L+ + R A+ L + GL Y E+A K+ VS +V+ ++ +A++H ++ L Sbjct: 132 NLSPQQRTAYTLCHIQGLKYEEVAKKMNVSSRTVQAHMRQALKHIREHFSKHAL 185 >UniRef50_C2BYK0 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601 RepID=C2BYK0_LISGR Length = 185 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 2/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + ++ E+LY +H + S+ R +++ A++I Q+ F+++ + L Sbjct: 8 LYEQVEDGQREALEALYDKYHKLIFSFAYRMVKNKELAEEIVQEVFIKIWTKKGLYQAEK 67 Query: 61 --PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 S+L TI + + +DL R+ L+ G P PE+ E ++ L Sbjct: 68 GKFSSWLLTITRNLSIDLIRKQKEVPYELQEEREKVPDGQPLPEDLTIWKEKRAEINQAL 127 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L ++ L T +IA KL + + +VK + A++H +E Sbjct: 128 AELKENQQQIIQLFYFQSCTQVQIATKLDIPLGTVKGRLRLALKHLKDIMVE 179 >UniRef50_A5FAI1 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FAI1_FLAJ1 Length = 182 Score = 171 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 70/164 (42%), Gaps = 1/164 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCT 67 FE ++ T+ L ++ ++ A++I Q+ F R+ + I +S+L Sbjct: 5 NEAAFEKVFKTYFKSLHAFAYTFMKDEIIAEEIVQNVFFRIWEKKEQLQIDDSLKSYLYR 64 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 ++ + ++ ++ + E + E + ++ L + R Sbjct: 65 SVHNESLNHIKHLKVKTSFQLEYSGNMEPSNQDASNQMIAAELETEIQKAINELPQQCRI 124 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 F +S+ + L Y +IA +L +SI +V+ + KA++ L +EY Sbjct: 125 IFQMSRFEQLKYQQIADQLNISIKTVENQMGKALKVMRLKLIEY 168 >UniRef50_Q2S0C7 RNA polymerase ECF-type sigma factor, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0C7_SALRD Length = 216 Score = 171 bits (436), Expect = 6e-42, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 78/173 (45%), Gaps = 2/173 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + +R T FE ++ + ++ +Q A DI QDTF ++ + + T+ Sbjct: 36 LRNRLGTGDEAAFERIFRRLSEPVFRFVCGMVQDEALAHDITQDTFAKLWSIRDRMDTVD 95 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP-SPEERESQLETLQLLDSML 118 ++++ +A+ + + R A+ + + + + +P +P+E LL+ + Sbjct: 96 SLQAYVFQMARNRVYNHQRDEAVRRDHEQDVRDAHPDASPPAPDETLDADLLRSLLERWI 155 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + REA L + L++ EIA + VS ++V ++ +A+ EY Sbjct: 156 AELPDRQREALTLRRQKDLSHDEIAEIMDVSPNTVNNHIVRAMRTLRERLGEY 208 >UniRef50_A6SVZ7 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SVZ7_JANMA Length = 178 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 105/160 (65%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T ++S + LY HHGWLK+WL +K +A D+A DT++RV+ + I PR+FL Sbjct: 13 TASSSDSLTRLYSDHHGWLKAWLRKKTGCPHNAADLAHDTYMRVIETRNAVEIDTPRAFL 72 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 TIAKRV+ FR +E+AYL+ +A +PE PS E + +ETL +D +LDGL K Sbjct: 73 TTIAKRVLASYFRHLEVERAYLDSIADLPEPLVPSLETQAIVIETLLEIDRILDGLPAKV 132 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 R AFL +Q+DG+ Y+EIA +L VS+SSVK+Y+A+A+ Sbjct: 133 RTAFLWAQIDGMPYAEIAERLDVSLSSVKQYMARAIRQIY 172 >UniRef50_D0TT72 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=D0TT72_9BACE Length = 206 Score = 171 bits (435), Expect = 9e-42, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 8/178 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + D + FE L+ T++ L+ + R ++ A DI Q+ FLR L + Sbjct: 10 LLDEIKKGNNQAFEYLFKTYYPRLRGYAIRFVEDEETARDIIQECFLRFWEKRALLSAVS 69 Query: 61 PRSFLCTIAKRVMVDLFRRNA-LEKAYLEMLALMP-------EGGAPSPEERESQLETLQ 112 S L + + ++ + + +EK +E LA + A E + E + Sbjct: 70 VTSLLFAMVRNGCLNYLKHLSIVEKHQIEYLASVDGEERLYYSDFALDAEHKLLYDELQE 129 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 ++ ++ L ++RE FL+S+ GL EIA KL +S ++V+K++AKA++ + Sbjct: 130 QINIVIGQLPERSREIFLMSRFKGLKNREIADKLQISTTAVEKHIAKALQCFSKHFKD 187 >UniRef50_A4BY85 RNA polymerase ECF-type sigma factor n=1 Tax=Polaribacter irgensii 23-P RepID=A4BY85_9FLAO Length = 204 Score = 171 bits (435), Expect = 9e-42, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 11/173 (6%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 ++++ + ++ L + + L + A DI Q+ F++V ++ Sbjct: 9 LAEQMKLGNAKAYDFLMHSFYQKLCGYAYTLSHDHAAAQDIVQNVFVKVWSNKKNINTSF 68 Query: 60 DPRSFLCTIAKRVMVDLFRRNA----LEKAYLEMLALMPEGGAPSPEERESQLETLQLLD 115 +S+L ++ +R+N LEK YLE + L+ E + + + LQL+D Sbjct: 69 SIKSYLYKSVYNEFINQYRKNKPVFFLEKKYLESVDLVVENSDENLD------QLLQLVD 122 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 + L K RE FLL++ +GLT+ EI+ L +SI +++ ++ +A + Sbjct: 123 KEIRDLPPKCREIFLLNKKEGLTHIEISEHLNISIKTIEGHMTRAFKILRNKL 175 >UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017466F3 Length = 202 Score = 171 bits (434), Expect = 9e-42, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 10/182 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + RA + F+SL + G + +Q+ DA D+AQ+ F++ + + Sbjct: 18 LVRRAQAGDARAFDSLVTRYRGKVYGMCYHLVQNEQDAWDLAQEAFIKAWRALPSFKGDA 77 Query: 60 DPRSFLCTIAKRVMVDLFRRNAL---------EKAYLEMLALMPEGGAPSPEERESQLET 110 +++ IA D R+ + +A + A G P+E E Sbjct: 78 SFYTWIYRIAHNSTYDWLRKRKIEGAGEFDDERQAGVAAGAETVPKGEHRPDEALKNREL 137 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + +D L+ R A LL +++G +Y EIA + S+ +V + A + + Sbjct: 138 GTRIQQAIDQLSPDHRTAILLREVEGFSYEEIAQIMESSMGTVMSRLFYARKKLQELLKD 197 Query: 171 YG 172 Sbjct: 198 AY 199 >UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Comamonadaceae RepID=A1W8K1_ACISJ Length = 222 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 3/172 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRD 60 RA F L + + +L R +S DA ++AQ+TFL + Sbjct: 51 IARAQRGEVAAFSELVARYQDRIYRFLFRMTRSQEDARELAQETFLNAYQALPRWQPDAQ 110 Query: 61 PRSFLCTIAKRVMVDLFRRNALEK--AYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L IA+ +DL RR E L+ P+PE + ++ L+ L Sbjct: 111 LSTWLFRIARNQALDLLRRAQRVAFVELDETLSEQMPADTPTPEAALQARQRIEALEGAL 170 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L+ + RE LL ++ + Y +IA LG+S+ +VK +A+A L Sbjct: 171 QRLSVEHREILLLRDIEDMAYEDIAEVLGISLGTVKSRIARARAGLLQLMPR 222 >UniRef50_C4KZA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KZA8_EXISA Length = 186 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 2/171 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + +R E LY + L +++ + + A++ Q+ F+++ + Sbjct: 6 LYERVRQKDKEALEILYDRYERILYAFVLQLTKDRDLAEEAMQEVFIKLWRGGGVYDESK 65 Query: 61 --PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 RS+L T+++ V +DL R+ + E A +PS E+ E +++ + Sbjct: 66 GKFRSWLFTMSRHVAIDLIRKRKPDLQLDESYAEAIPSDSPSVEKEVEWQEERAQIETAM 125 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L + ++ L GL+ +IA G+ + +VK + A+ Sbjct: 126 ATLPAEQQQVVRLMYFQGLSQQKIADACGIPLGTVKGRIRLALRQLRKQLS 176 >UniRef50_C6VZZ8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VZZ8_DYAFD Length = 203 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 5/174 (2%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRS 63 T F L+ H+ L ++ R + + A+++ D F+++ + + ++ Sbjct: 28 VTNGDYNAFRELFTRHYRSLCNYAMRVVVTREIAEEVVSDVFVKLWKNREQIEVHTSFQA 87 Query: 64 FLCTIAKRVMVDLFR---RNALEKAYLEMLALMPE-GGAPSPEERESQLETLQLLDSMLD 119 ++ + +D + E+ L+ + SP E S E ++ + Sbjct: 88 YIYRAVRNQALDYLKLRIHRQNERDSLDSVQWNMSHADHFSPAEELSYNEFYSHIEDCIQ 147 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L + + F LS+ +GL Y +IA +L +S+ +V+ +++A++ E+ L Sbjct: 148 ALPRQCQLIFRLSREEGLRYRDIAERLEISVKTVETQMSRALKVLRERVPEHRL 201 >UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S9_HALOH Length = 195 Score = 170 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 10/173 (5%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFL 65 F L + + + R L ++ DA D+ Q+ F++ + + ++L Sbjct: 15 AGEKELFARLVEKYQRKVYNTTYRMLGNSEDASDLTQEAFIKTFRNLKRFRGKASFSTWL 74 Query: 66 CTIAKRVMVDLFRRNALE---------KAYLEMLALMPEGGAPSPEERESQLETLQLLDS 116 TI + D R+ + ++ + + PE+ ET+ + Sbjct: 75 FTITTNLCRDELRKRQRRSASPHFPDGQHFMSEDIENIKDNSKVPEDLYMGRETMASIQR 134 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 ++ L +E +L + G +Y EI+ +GV + +VK +++A + Sbjct: 135 AINKLPADQKEVIVLRDIQGFSYKEISEIIGVPMGTVKSRLSRARKSLQKHLK 187 >UniRef50_D1W083 RNA polymerase sigma-70 factor n=2 Tax=Prevotella RepID=D1W083_9BACT Length = 195 Score = 170 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 80/161 (49%), Gaps = 2/161 (1%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRSFLCT 67 +F+ ++ ++ +K+++ + +A+DIAQD FL++ + I + ++L T Sbjct: 27 NDYSFDVIFKLYYPKVKNFVYGFVGVESEAEDIAQDIFLKLWMKRNSIQIMTNFEAYLYT 86 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +A+ ++ + +++ L+ L E+ E +L++ + + + R Sbjct: 87 MARNCTLNALKSSSIRHK-LQSLTDADVVADTGVEDIIYSEELHELINRVTSQMPDQRRR 145 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 F +S+LDG++ EI H+L +S +V+ ++++A+ Sbjct: 146 IFTMSRLDGMSNEEIGHRLNISKRTVETHISQALAQIRRLL 186 >UniRef50_D0TF22 Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TF22_9BACE Length = 203 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + D+ + FE + L+++ + +A+DI QD FL++ L Sbjct: 13 LFDKIRGGNAKAFEYAFRKFSPRLEAFAQKYTNDTNEAEDIVQDVFLKLWERRELLDNIS 72 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMP-------EGGAPSPEERESQLETLQL 113 SFL + + ++ + + + + P P Q E Sbjct: 73 LTSFLFMMVRNSCLNYLKHRQIADTVQQRIPDTETAERLYAADFVPDPSSLLIQKELSDS 132 Query: 114 LDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 +D +++ L K +EAF+LS+L+GL EIA + ++ V+K++ +A++ Y Sbjct: 133 IDQIMEELPPKCKEAFVLSRLNGLKNREIAEHMAITEKVVEKHITRALKRFRDGLRRYA 191 >UniRef50_D2QTW1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QTW1_9SPHI Length = 227 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 7/172 (4%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRSF 64 E L+ +H L S R + S A+D+ D F + ++ I R + Sbjct: 47 REDPRKGCELLFRRYHQALCSHAVRFVYSKETAEDLVSDVFCKFWKTKAYENITSSYRYY 106 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPS---PEERESQLETLQLLDSMLDGL 121 L + + R LE L+ L P + S P++ E L ++ +++ L Sbjct: 107 LFRSVRNEAYNYLR---LEFQILDDLDTAPVLESASGQRPDQVLQFEEVLHRIEELVESL 163 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 + R+ FLLS+ DG Y +IA +LG+SI +V+ ++ KA+ E+ L Sbjct: 164 PPQCRKVFLLSRFDGRKYQDIATELGISIKTVEVHIGKALGTVRKGLKEHWL 215 >UniRef50_B3PJT4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJT4_CELJU Length = 172 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 76/166 (45%), Positives = 110/166 (66%), Gaps = 2/166 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS--TI 58 MS + ++ ESLY HH WLK WL R+L +D+A DTF+R++ S L+ I Sbjct: 1 MSAMPSQSSHSFTESLYSDHHHWLKRWLRRRLDCPVQVEDLAHDTFVRILKSHQLAAAPI 60 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 R+PRS+L TIA +++D FRR +E+AYLE LA + + PSPEE+ L+ L +D++L Sbjct: 61 REPRSYLSTIAGALLIDFFRRRTVERAYLEALAGLAQDEWPSPEEQAEILDVLIRIDALL 120 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 DGL + R+ FL+SQLDG+TY++IA +L VS+ +VK +A A HC Sbjct: 121 DGLKPRVRKVFLMSQLDGMTYADIAARLDVSLRTVKSDMATAFGHC 166 >UniRef50_A6W1Y2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1Y2_MARMS Length = 172 Score = 169 bits (430), Expect = 3e-41, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 1/160 (0%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKRVM 73 LY H WL W+ +L A DIAQDTF+R++ S + + R+FL TIAK + Sbjct: 13 ELYAEHSSWLTGWIRSRLGCHELAADIAQDTFVRLLKRPKYFSNMGEARAFLSTIAKGLY 72 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 +D +RR +E+A+LE LA E PS E S +E L LD+M+ L K +LSQ Sbjct: 73 IDHWRRKQVEQAWLESLAHCDEEFVPSAEHSASMIELLCELDAMIAKLPKKVANTLILSQ 132 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L GLTY EIA +L VS VK+Y+A+A+ CLLF+ + L Sbjct: 133 LHGLTYREIAERLSVSERMVKRYMAQAMLQCLLFKSDRSL 172 >UniRef50_D1P6G0 RNA polymerase sigma factor, sigma-70 family n=4 Tax=Providencia RepID=D1P6G0_9ENTR Length = 178 Score = 169 bits (430), Expect = 3e-41, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 5/161 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y + H L + +L ++ DADD++QD F + + +++ R++L IA V++D Sbjct: 15 YQSTHSQLVRFFRNRLGNSNDADDLSQDVFTLWLNRKAEDPVKESRAYLFKIASNVLIDH 74 Query: 77 FRRNALEKAYLEMLALMP-----EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +RRN + + + E A P E + + L +D L + REAFLL Sbjct: 75 WRRNQQQNQSATSIDDVAHEHSFEQTAADPSEILEHQQRITQLSEAIDLLPPRRREAFLL 134 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + DGL+ SEIA ++ +SIS V+K++A A+ HC + + G Sbjct: 135 YRFDGLSQSEIAERMEISISMVEKHIAAALVHCKKYLEDQG 175 >UniRef50_A6SX54 Uncharacterized conserved protein n=3 Tax=Proteobacteria RepID=A6SX54_JANMA Length = 169 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 76/160 (47%), Positives = 107/160 (66%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 + S +LY HHGWL L RKL + +ADD+AQDTF R++ + + IR+PR++L Sbjct: 4 ASHSDAVANLYSHHHGWLVGLLRRKLGNVDNADDLAQDTFTRLLTARSEELIREPRAYLT 63 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 TIA R+ FRR ALE+AYL+ LA MPE PSPE R +E L + +LDGL+ + R Sbjct: 64 TIASRLTAQYFRRLALERAYLDALAGMPEETVPSPETRMLVVEALTEISRVLDGLSPRVR 123 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 E FLL+QLDGLTY+EIA + +S+++V+K + +A +HC Sbjct: 124 EIFLLAQLDGLTYAEIATQFDMSVNAVQKSMIRAFQHCYT 163 >UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW59_9BACT Length = 213 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 11/181 (6%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + R+ + F L + + + +++ DA D+AQD FL+ S Sbjct: 28 LVARSQAGDTSAFNELVIRYRNRAYAMIYNMVRNEQDAWDLAQDGFLKAWKSINRFRGQS 87 Query: 60 DPRSFLCTIAKRVMVDLFRRNALE--KAYLEML--------ALMPEGGAPSPEERESQLE 109 ++L I V +D R+ +E + + + + A P ER S E Sbjct: 88 SFYTWLYRILMNVAIDSLRKKQIEGGQEFDDQIGLHNIAPGAATAPKSEMEPAERISDKE 147 Query: 110 TLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 Q +D + L+ + R A ++ ++DGL Y+EIA ++G S+ +V + A + Sbjct: 148 IRQRIDEAIAKLSPEHRTAIVMREIDGLEYTEIAEQMGCSLGTVMSRLFYARKKLQALLK 207 Query: 170 E 170 + Sbjct: 208 D 208 >UniRef50_A6E873 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E873_9SPHI Length = 193 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 68/164 (41%), Gaps = 1/164 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCT 67 +FE L+ H+ L ++ L+ + A++I Q FL+ L ++ +++L Sbjct: 14 DDQSFEQLFKAHYKSLHAYALVILRDSDLAEEIVQGMFLKFWEKRALLNVKTSVKAYLYR 73 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 ++ + ++ + + + E L L L + R Sbjct: 74 CIYNDALNHLKHERIKLKHQQFTHQTMNSSHEPASSKVELSELQLKLSEALRTLPEQCRT 133 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 F +S+ + L Y EIA +LG+S+ +V+ + KA+ + ++ Sbjct: 134 IFQMSRFEELKYREIADQLGLSVKTVENQMGKALRILRVRLADF 177 >UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma subunit n=5 Tax=Acinetobacter RepID=B2HV64_ACIBC Length = 178 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 96/161 (59%), Gaps = 3/161 (1%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKRV 72 + LY +H WL WL +KL + A D+ QDTF++++ + L I++PR++L +IAK + Sbjct: 14 DQLYRSHQSWLHQWLRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNL 73 Query: 73 MVDLFRRNALEKAYLEMLALMP--EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 ++D RR +E+AYL+ L+ M SPE++ ++ + L L+G+ K ++AF+ Sbjct: 74 LIDQVRRKRIEQAYLDGLSQMEYMLDAVASPEDQMQIIQAINQLCKALEGVCEKAQQAFI 133 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L L+G T+ EIA +L VS ++KY+A + C R + Sbjct: 134 LHYLEGYTHKEIAERLNVSTKMIQKYLASCLIQCYQNRQDM 174 >UniRef50_A5FNM7 ECF subfamily RNA polymerase sigma-24 subunit n=7 Tax=Bacteroidetes RepID=A5FNM7_FLAJ1 Length = 171 Score = 168 bits (428), Expect = 5e-41, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 1/163 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 ++ T + F S + +H L+++L K + A+DI Q+ F+++ + + +S Sbjct: 6 QSDTCDEIIFSSFFKSHAKALRNFLLYKFGNIEQAEDITQEAFVKLWQNCASVPLEKAKS 65 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 ++ TIA ++ + Y + + + SPE + + L ++ LN Sbjct: 66 YIYTIANNSSLNQIAHQKVVLKYEKNFTGLDKTNE-SPEYILEEKQFQAKLLKAIENLNE 124 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 K R AFL+ ++DG YSEIA +L +S+ +V+K + A+ Sbjct: 125 KQRTAFLMHRIDGKKYSEIAAELNISVKAVEKRIHLALLSLRK 167 >UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A648_NATTJ Length = 206 Score = 168 bits (428), Expect = 6e-41, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 74/180 (41%), Gaps = 10/180 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + FE L +H + S R + DA+D+AQ+ F+RV S + Sbjct: 11 LVKQCQNGHLDAFEELVHKYHQKVYSLCYRFSGNHDDANDLAQEAFIRVYHSINKFHFKS 70 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAY-LEMLALMP--------EGGAPSPEERESQLET 110 ++L + V +D R+ + + L+ +PE + + Sbjct: 71 AFSTWLYRVTSNVCLDEMRKRKRKSSVSLDSPMETDDGELYFNLPDQKFNPELMAERKDV 130 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +++ + L + LL +++G +Y E+A + VS+ +VK +++A + ++ Sbjct: 131 QEIVHKAIQELPKDQKLTLLLREMEGFSYDEMAEVMNVSVGTVKSRLSRARNNLKEILVQ 190 >UniRef50_C6W0L2 Transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W0L2_DYAFD Length = 195 Score = 168 bits (428), Expect = 6e-41, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 1/165 (0%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 L F LY + L ++ K+ F A +I Q+ F+ V + + +SFL Sbjct: 21 QDDELAFGELYNRYFKTLFNYAYSKVNDRFTAQEIVQELFVNVWQKRRQNQVECGQSFLF 80 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 TIAKR+++ +R+ + + + + ++ + + L L+ K + Sbjct: 81 TIAKRLIISFYRKEYTRQHHYGQWEIHRSEASEPADQPTLASDLQHRYEEGLHLLSPKCQ 140 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 E F++S+ G + +I +LG+S +V++++ KA+ E+ Sbjct: 141 EVFVMSR-QGFSNKQIGEQLGISEKTVEQHITKALRILKAHLKEH 184 >UniRef50_C6XT34 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT34_PEDHD Length = 201 Score = 168 bits (427), Expect = 8e-41, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + F LY + L + L+S A+++ Q F+++ + +L + Sbjct: 16 LVALLQKGDKGAFGELYHRYKRKLYYNFRKLLKSESQAEELLQQLFVKIWENRLSLDPDK 75 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +++L IA+ ++ D FR+ + +K +L + EE E L++ + Sbjct: 76 VFKAYLFRIAENLVYDFFRKASRDKNMGAILMTVATENYSHIEEAIYSKEREALINRAVA 135 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L + R F L +L+G TY E++ +LG+S S++ ++ KA + Sbjct: 136 SLPPQRRHVFTLCKLEGKTYEEVSVELGISTSTINDHIVKATRSVREYL 184 >UniRef50_C6DJA9 RNA polymerase sigma factor n=6 Tax=Enterobacteriaceae RepID=C6DJA9_PECCP Length = 170 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 78/164 (47%), Positives = 108/164 (65%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 M +AT + + + LY HH WL +WL KL A A+D+AQDTFL V+++ L TIR Sbjct: 1 MVRKATASVNDFAQQLYFDHHRWLYNWLRHKLDCAQHAEDLAQDTFLSVLMNPELLTIRQ 60 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR FL T+A+R++ + +RR +E AYL++L+ P+ PSPE R LE L+ LD+ LDG Sbjct: 61 PRPFLATVARRLVANHYRRKKIEDAYLDVLSSQPDACMPSPETRLLTLEILEQLDAALDG 120 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L REAFLL+ L G+ YS+IA +L VS SSVK+Y+ +A C Sbjct: 121 LPAPVREAFLLAHLHGMRYSDIAERLRVSSSSVKQYLQRANLQC 164 >UniRef50_C5PSA3 RNA polymerase sigma factor n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PSA3_9SPHI Length = 198 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 1/161 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + + FE LY + + L +S D+ Q+TF+ V + L + Sbjct: 12 LLLKLKNGDRHAFEQLYHFYKNHITGHLFYIFKSEELTQDVTQETFITVWENRFQLHADK 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +S+L TIA DL R+ L+K + ++ + + E + + L +L Sbjct: 72 SFKSYLYTIATNKAYDLLRKANLDKQLYDKVSSFIDSSSDEIYETLFVKQRSEQLHQILA 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA 160 L + R F +++LDG +Y EIA LG+S +V ++ +A Sbjct: 132 QLPSQQRLVFQMAKLDGYSYEEIARALGISQHTVNTHIKRA 172 >UniRef50_A6SXC6 RNA polymerase sigma-70 factor, ECF subfamily n=8 Tax=Proteobacteria RepID=A6SXC6_JANMA Length = 190 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTI 68 +LY HHGWL WL +KL AF A+D+A DTFLR++V L + DPR++L I Sbjct: 23 QQQMHTLYSNHHGWLHGWLRKKLGCAFQAEDLAHDTFLRLIVRPRQLDSAYDPRAYLTKI 82 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+ ++VDL+RR +E+A+L LA PE PS E + +ETL +D +L L K R A Sbjct: 83 AQGLVVDLWRRQEIERAWLATLAAHPESVVPSAEHQAIIIETLIEVDRLLAQLPEKPRRA 142 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 LL+ L +TY+EIA L VS VKKY+A+A+ HCLL Sbjct: 143 LLLAHLHDMTYAEIAQVLDVSERMVKKYMAQAMLHCLL 180 >UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=3 Tax=Peptococcaceae RepID=A5D0C6_PELTS Length = 204 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 10/176 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +R+ FE L + + + R L + DA D+AQ+ FLR+ + Sbjct: 8 LVERSQNGDLEAFEMLVRRYENKVYTVAYRFLGNHADASDLAQEAFLRLYQALPRFRGES 67 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEG---------GAPSPEERESQLET 110 ++L I D RR E PSPE+ + E Sbjct: 68 SFMTWLYRITANACRDELRRRQRNSTVSLDGENGLEHIQNYSLFSGYIPSPEDTVEKKEL 127 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 +L+ L+ ++G+ R ++ ++ G+TY EI+ + S+ +VK +++A Sbjct: 128 NELVQMCLNSISGEHRLILVMREIQGMTYDEISAVMNCSLGTVKSRLSRARRAFRE 183 >UniRef50_A6T181 RNA polymerase sigma-70 factor, ECF subfamily n=69 Tax=Proteobacteria RepID=A6T181_JANMA Length = 181 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 79/164 (48%), Positives = 110/164 (67%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + A + LY HHGWL +WL ++L ++FDA D+A DTFLRV+ + IR+ Sbjct: 12 LMSAADSVQQQQVHLLYTEHHGWLHAWLRKRLGNSFDAADLAHDTFLRVLTKDVPLAIRE 71 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 PR+ L TIA+ ++ +L+RR +E+AYL+ LA++PE A SPE R LETL +D +LDG Sbjct: 72 PRALLTTIAQGMVANLYRRRQIEQAYLDALAVLPESHAISPEARAIMLETLVEIDRLLDG 131 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 L R+ FLLSQLDGL +EIA +L +SI +VK+Y+AKAV C Sbjct: 132 LAPLVRKVFLLSQLDGLGQAEIAERLAISIPTVKRYIAKAVAQC 175 >UniRef50_C6XY37 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter RepID=C6XY37_PEDHD Length = 193 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 2/170 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + + F+ L+ H L +++ + +S A++I D F+++ S L+ IR Sbjct: 8 LLLSISKGDEEAFKCLFRKHRDKLFAYIFKITKSRETAEEIVMDVFMKIWESGEVLTEIR 67 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE-GGAPSPEERESQLETLQLLDSML 118 + +FL IA+ +D R A ++ +E+L A P+++ E +D + Sbjct: 68 NFPAFLFHIARNKSLDFLRMAAKDRVLVELLWDQINTPAADQPDDQLLLNELKSNIDKAV 127 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L+ + + F LS+ +TY +IA L +S S+VK ++ ++ Sbjct: 128 AQLSPQRKSVFRLSREQHMTYDQIASHLQLSKSTVKNHMLDSLHFIRHHL 177 >UniRef50_C2G4M9 RNA polymerase ECF family sigma factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4M9_9SPHI Length = 190 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 1/171 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + F Y H L + +K + A D+ Q+ F + TL I Sbjct: 12 LIVLTKADDQDAFSMFYNRHKLALYTHAYQKTGNLEQAKDLVQELFTNLWDRRYTLPHIL 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +++L T + ++D + +E YL+ L G ++ + E ++ ++ Sbjct: 72 NIQAYLHTTLRNRILDYIAHHKVESKYLDSLQEFISKGHCMTDQHIIEAELAAYIEQTVN 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L K RE + +S+ ++ EIA +LG+S +VK ++ A++ Sbjct: 132 ALPPKMREVYTMSRYTPKSHREIADELGISEFTVKNHIKAALKIIREKLNR 182 >UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QW1_RHOFD Length = 187 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 1/170 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRD 60 RA F L H + +L R L S DA ++ Q+ F++ + Sbjct: 15 VSRARAGDRKAFSELVRRHQKPVHRYLLRMLGSHDDAMELTQEAFIKAWQALPQWRPEAQ 74 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 R++L IA +D R L + + G P P + + ++ LD+ L Sbjct: 75 FRTWLFRIANNTALDALRHRKLIEFVPLEDSFDAPGSEPDPAHQAQVTQEVRQLDTSLKK 134 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L + R+ LL +++ ++Y EI L ++ +VK +A+A + R Sbjct: 135 LMPEHRQILLLREVEEMSYEEIGSVLSLNEGTVKSRLARARAALIEIRAR 184 >UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTA8_9CORY Length = 268 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 2/165 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A T ++ L H + R + DA+D+ Q+TF+RV S + + Sbjct: 86 AGTGEMPSWADLVAEHADGVYRLAYRLSGNKQDAEDLTQETFMRVFRSLKSYKPGAFKGW 145 Query: 65 LCTIAKRVMVDLFRRNA--LEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 L I + +D+ R + +A E G P+P+E L+ L L+ Sbjct: 146 LHRITTNLFLDMVRHRSAIRMEALNETAYDRYPGSDPTPDEAYINSNLDPTLERALFNLS 205 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 R A +L ++GL+Y EIA LGV + +V+ + + + + Sbjct: 206 PDYRVAVVLCDMEGLSYEEIAETLGVKMGTVRSRIHRGRKQLREY 250 >UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizobiaceae RepID=A4YXH9_BRASO Length = 234 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 5/173 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-- 58 + DR T + F L H + R + SA DA+D+ QDT L+V Sbjct: 54 LLDRLATGDEVAFRLLVERHIDRAYAIALRIVGSAADAEDVVQDTMLKVWTHRGRWQHGR 113 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L + +DL R+ E + G P + + LL+S + Sbjct: 114 AKFSTWLYRVVSNRCIDLRRKPRTENV---DVVPEVPDGKPDAVSVIERAQMSDLLESAM 170 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + R A +LS + ++ EIA + ++++V+ + + + + Sbjct: 171 QRLPEQQRVAVILSYHENMSNGEIAEVMETTVTAVESLLKRGRQQLREMLRRH 223 >UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RAI8_AMMDK Length = 215 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 10/182 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + ++A + FE L + + R + DA+D+AQ+ F+R + Sbjct: 7 LLEQARAGSHQAFEELVLAYQDRVYGLCYRLTGNHDDAEDLAQEVFVRAYRGLRSFRAEA 66 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP---------SPEERESQLET 110 D ++L IA + ++ R+ L+ +P+G P PEE + E Sbjct: 67 DFGTYLHRIAVNLFLNHRRKANHNTLSLDDPVSVPDGELPRQVADGNHLHPEEEAEKREF 126 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 ++L+ L+ L+ + R +L +++ ++Y EIA LGV+ +VK + +A ++ Sbjct: 127 IRLVRRALNSLSREHRAVLVLREMEEMSYEEIAAVLGVAPGTVKSRLNRARAALQKALIK 186 Query: 171 YG 172 Sbjct: 187 MA 188 >UniRef50_C6XVX9 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter RepID=C6XVX9_PEDHD Length = 193 Score = 166 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 1/173 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + ++ F LY + + ++ L+S A+D+ QDTF+++ ++ T R Sbjct: 11 LLEKLKQQDRAAFSQLYNLYVKKIYAYALGILKSPVLAEDVTQDTFVKLWEHAASVRTDR 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + FL TIA+ + +++ ++ + E + L + + + +T + + + Sbjct: 71 SVQGFLFTIARNLALNILKQASRETWISDELFGHALDQSEDGLQYTERRQTGEFIGKAIA 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L + R + L + G +Y + A KLG+ S+V + KA++ F + G Sbjct: 131 QLPPQRRLIYDLCRNYGYSYKQAAEKLGIKDSTVNSQMVKALKTIKDFMVRNG 183 >UniRef50_A6EFD9 Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EFD9_9SPHI Length = 189 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + D L +E +Y + L + R LQ +A D+ QD F + +TL Sbjct: 12 LLDHFQQGDRLAYEEIYHRYWALLFNHGRRILQDDEEAKDLVQDAFAVLWKDGKTLVLKT 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++L + + + DL R ++ YLE L S + + + +++ + Sbjct: 72 SLSAYLYAVIRYKVFDLIDRQKVKNGYLESLEHFIAENNYSSDHLVREKQLEVIIEKEIA 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L K RE F LS+ L+Y EIA KL +S ++VKK + A++ Sbjct: 132 ALPAKMREIFELSRKANLSYLEIAQKLNISDNTVKKQINNALKILRNKL 180 >UniRef50_A6LGM3 RNA polymerase sigma factor n=2 Tax=Parabacteroides RepID=A6LGM3_PARD8 Length = 193 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 2/172 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPR 62 R L F+S+Y ++ + +++ L + +A+D+ Q+ F+R+ I + Sbjct: 10 RLQEGNMLAFQSVYESYSAHIYNFIYSLLYNRLEAEDLTQEVFVRIWEKRGSLDIDKNFD 69 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEML-ALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 S++ TIA+ ++ D + + Y++ L A E P EE + Q +DS++D L Sbjct: 70 SYIFTIARNLVYDEWDSLFHAELYMKSLEADWDERDTPKVEEDITVNSIGQYIDSLIDKL 129 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 RE FLLS+ + L+ EIA +L +S +V+ + ++++ + E G+ Sbjct: 130 PVSRREIFLLSRKEHLSTKEIAQRLSISERTVEAQIYRSLQFLRKYLAEEGI 181 >UniRef50_C6Y0D6 RNA polymerase sigma-70 factor n=2 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0D6_PEDHD Length = 192 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 ++D + F ++ ++ L +K + +A D Q+ F + ++ Sbjct: 12 LADLLKSGDRTAFTEIFNRYNSLLYIHAFKKFNNKEEARDAVQEAFAMIWAKRETLMVKS 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L T + ++D RN + YL L + ++ + ++D ++ Sbjct: 72 NLVGYLYTCVQHKILDQISRNKTARNYLASLQNFIDEVKEGTDDLIRLKQLSAIIDQEIN 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L K RE F LS+ L++ EIA KL +S +VK V A++ + Sbjct: 132 ALPNKMREIFELSRKKNLSHKEIAAKLNISEETVKSQVKNALKILRVKL 180 >UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacillales RepID=SIGW_BACSU Length = 187 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 9/176 (5%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPR 62 + F + + + R L + +A+DIAQ+ F+R V+ I R Sbjct: 11 QVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFS 70 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLA--------LMPEGGAPSPEERESQLETLQLL 114 ++L IA + +D R+ + +A PE+ LE + Sbjct: 71 TWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTI 130 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + L K R +L +D L+ EI L + + +VK + + E + Sbjct: 131 QQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186 >UniRef50_A5FKM6 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FKM6_FLAJ1 Length = 187 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 81/172 (47%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + + F L+ ++ + + L+S A++ QD F++V L+ + Sbjct: 12 LVSELKNGSEKAFRFLFDLYYQDIYGYSISLLKSREAAEENVQDVFMKVWQHRENLNLEQ 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++++ TIA+ ++ + A + A E + + + + + +L + Sbjct: 72 SFKAYIFTIARNQAFNILNKAANDLALKEAVFYESQKSHEYGDYAIREEDCKKLRKQAIK 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L K ++ F +S+ G++Y EI+ +LG+SI++V+ ++KA+E +F + Sbjct: 132 QLPPKRKQIFKMSRKKGMSYEEISQELGISINTVRNQMSKALESMRVFFQVH 183 >UniRef50_C3JY07 Putative RNA polymerase sigma factor n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3JY07_PSEFS Length = 180 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 98/160 (61%), Gaps = 1/160 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 T ++Y HHGWL WL +KL + A D+A D F+RV++ I++PR+FL T A Sbjct: 14 QQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQNIKEPRAFLATTA 73 Query: 70 KRVMVDLFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 R+++D RR +EKAYLE L + + G P P L+ L+ + ML GL REA Sbjct: 74 GRLLIDGARRRRIEKAYLEALVIQCADAGMPDPAAIHVALQALERIAEMLAGLPANAREA 133 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 FLLS+LDGLTYSEIA +L VS S+VK Y++ A+ HC Sbjct: 134 FLLSRLDGLTYSEIATRLDVSSSTVKNYISSALVHCYHSL 173 >UniRef50_B7UW20 Probable sigma-70 factor, ECF subfamily n=12 Tax=Bacteria RepID=B7UW20_PSEA8 Length = 175 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 5/161 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y HG L +L + L S+ DA D+AQDTF + + ++ PR+FL IA+ ++ D Sbjct: 13 YQAFHGELLRFLRKHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72 Query: 77 FRRNALEKAYLEMLALMPEG-----GAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 +RR L+ A E A P ER Q + L L + L L + REAF+L Sbjct: 73 WRRQQSRGQDLDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVL 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + DGL+ E+A ++G+S+S V+K++A A+ HC + G Sbjct: 133 HKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQGG 173 >UniRef50_D0MD44 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD44_RHOM4 Length = 173 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 1/157 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTIAKR 71 F + ++ L + R LQ + +D+ Q F+R E R +L + Sbjct: 13 FRQFFLQYYAELCDFAQRFLQDPDEVEDLVQGAFVRAWEREIDWDDTERARLYLYRSVRN 72 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ +++ LE +PSPE+ E ++ L L R FLL Sbjct: 73 AALNYLAHQKMKRRRLEQFHEQAARWSPSPEQAVQAAELTAAIERALAQLPETRRTIFLL 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 S+ GL+Y EIA +G+S+ +V+ + +A+ + Sbjct: 133 SRYHGLSYREIAEVMGISVKTVETQMGRALRFLSQYL 169 >UniRef50_C6Y2W3 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y2W3_PEDHD Length = 197 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 1/164 (0%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSF 64 F +LY + L K S A+++ Q++F+++ ++ T +++ Sbjct: 17 KEGDEQAFSNLYKMYVMPLMRLAVSKTNSREIAEELVQNSFVKLYEHKRSIETNTSIQAY 76 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L I K +++ +R + Y +A S E+ E L++ ++ L K Sbjct: 77 LFVILKNQILNHYRSQLVRNKYELHIAKHANAEDHSLIEQIESRELAALINMEIEKLPPK 136 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 RE F+LS+ L+ EIA KL +S ++V++++ KA+ + Sbjct: 137 CREVFILSRKGFLSNKEIAAKLDISENTVEQHIRKAISKLRMSL 180 >UniRef50_D0J502 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Comamonas testosteroni RepID=D0J502_COMTE Length = 174 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 3/173 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM---VSETLST 57 M A + AS S+Y H+ WL SWL RKL + DA DIAQDTF R+ ++ + Sbjct: 1 MPTHANSIASEALGSMYTLHNRWLISWLQRKLGNRCDAADIAQDTFTRIWTTARTQAIED 60 Query: 58 IRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSM 117 IR+PR++L +A+R+M++ R +LE+AYL L L+PE A S E R LETL+ LD++ Sbjct: 61 IREPRAYLTIVARRLMINHLERRSLEQAYLASLHLLPEATALSAEARAILLETLEELDAL 120 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L L K R AFLLSQL+GL Y EIA ++ VS+ +V +Y+A+ CL L+ Sbjct: 121 LGELPTKVRTAFLLSQLEGLAYEEIATQMQVSVRTVTRYMAQGFRQCLRVMLD 173 >UniRef50_D0MHK9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHK9_RHOM4 Length = 187 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 71/170 (41%), Gaps = 3/170 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 ++ R + FE L+ ++ L + + + +A+++ Q F+ + + + Sbjct: 13 LAARVRQGDAAAFERLFRAYYTPLVHFAVHIVGTLPEAEEVVQRVFVNIWRNRAAWAPHV 72 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++L + V A A P P+++ + +L++ ++ Sbjct: 73 SVAAYLYGAVRNEAVKY--SQRRPPAVPLEEAAEMACDRPHPDQQLVGNDLTELIERLIQ 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L + R F LS+ GLTY+EIA LG+SI +V+ + +A+ Sbjct: 131 ELPEQRRLIFTLSRDHGLTYAEIAQSLGISIKTVETQMGRALRQLRERLQ 180 >UniRef50_C1DIP0 RNA polymerase sigma factor, FecI family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DIP0_AZOVD Length = 234 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 1/157 (0%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 + ++ L +LT +L+ A D+ D ++R++ S ++ P+++L A + +D Sbjct: 59 IMEKYYQQLVRYLTTRLRDRHLAADVVHDAYVRILEGGHGSLVKYPQAYLYRTAINIAID 118 Query: 76 LFRRNALEK-AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 RR + + LE + SP++ + L++ L+ L+ R+AFL+ +L Sbjct: 119 THRRETVRRSESLEDIEPHAAEQFLSPQDSLYLRQRATLVERALNELSENCRKAFLMRKL 178 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 DGL ++EIA ++G+S V+K++ A+ HC + E Sbjct: 179 DGLGHTEIAARMGISKDMVEKHIVNAMRHCRIRVREM 215 >UniRef50_B5CYT2 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CYT2_9BACE Length = 187 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 5/162 (3%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTIAKR 71 F+S + H+ L + DA+DI Q+ F+ V ++ +++ T + Sbjct: 11 FKSRFQEHYSRLCRIAYGYVSDQDDAEDIVQELFISVWNKRLDDMPEKEFAAYMTTSVRN 70 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEE-RESQLETLQLLDSMLDGLNGKTREAFL 130 V R+ + ++ P + P+E E +++S LD L + RE FL Sbjct: 71 SCVSFLRKRRDDTVSIDA---YPASASCMPDEGPEEGKTLQDIMESALDTLPARCREVFL 127 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L++L GL Y EIA KL VS +V+ + KAV+ ++ E+G Sbjct: 128 LAKLHGLKYREIAEKLEVSEKTVENQMTKAVKLLRMYVAEHG 169 >UniRef50_C3QHX8 RNA polymerase ECF-type sigma factor n=7 Tax=Bacteroides RepID=C3QHX8_9BACE Length = 184 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 82/178 (46%), Gaps = 10/178 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 M+ +++F LY ++ L + + S DA++I QD F + +++ I Sbjct: 1 MNTNLKKHTTMSFSELYLIYYPKLVRFAKEFVMSEEDAENITQDVFTDLWEKRESMNHIE 60 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP---------SPEERESQLET 110 + ++L + + +D + E+ Y+E + E + + + Sbjct: 61 NMNAYLFRLVRNKCLDYLKHKVFEQKYVENVKASFEIELNLKLQSLDRFDVYDISERNQM 120 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 +L+ ++ L + R+ FLLS+++GL Y EI+ +LG+S+++V+ + A++ Sbjct: 121 EKLIRDAINSLPKRCRDIFLLSRMEGLKYREISERLGISVNTVECQMGIALKKLRAKL 178 >UniRef50_A6E7V9 RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) n=1 Tax=Pedobacter sp. BAL39 RepID=A6E7V9_9SPHI Length = 197 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 2/166 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + +Y + + + +L + +A++ QD ++ ++ Sbjct: 12 LIQLMQGGDERALIEIYNRYWEKMLAVAYNRLGNQEEAEECIQDVLYKLWKLRGDFSLSK 71 Query: 61 --PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L + ++ + E+ + + SPE + E Q +D + Sbjct: 72 VGLSNYLSRAIRNQAFNMLEQRYRERKKSDSYVPSDDVNLLSPERQLMIRELQQQIDDSI 131 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 + L + + F LS+ +GL+ EIA KL +S ++VK ++ KA + Sbjct: 132 NSLPPQCQLVFKLSRQEGLSNKEIAEKLNLSENTVKSHLKKANKDI 177 >UniRef50_D1VYX9 RNA polymerase sigma-70 factor n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VYX9_9BACT Length = 191 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 5/161 (3%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLC 66 F+ L+ ++ + ++ A+DI QD F+++ ++ T I++ ++L Sbjct: 22 GDEKAFDELFVKYYPKVLQFVMHFNHDKSVAEDIVQDLFMQLWINRTHFLGIKNIDNYLF 81 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGA-PSPEERESQLETLQLLDSMLDGLNGKT 125 A+ R Y E ++PE +PE R E +LL + + + Sbjct: 82 VSARNAA---LRCLKDSFTYNENARIIPESNDMENPEVRLCYEEFYKLLMQEVQKMPEQR 138 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 R+ FL+S++DG++ +EIA KLG+S +V+K+++ + + Sbjct: 139 RKVFLMSRVDGMSNAEIAEKLGISKRTVEKHISLGIAYLRE 179 >UniRef50_Q88IB3 RNA polymerase sigma-70 factor, putative n=2 Tax=Pseudomonas RepID=Q88IB3_PSEPK Length = 168 Score = 165 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD-PRSFLCTIAKRV 72 ++LY HHGWL+ WL RKL +A DA D+A DTF+R++ + + PR+ L IAK + Sbjct: 13 QTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLTHIAKGL 72 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +VD +RR +E+AYLE +A +P+ PSPE R LETL +D+ML + + R+ FLLS Sbjct: 73 VVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVRQVFLLS 132 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 QLDGLTY++IA +L VS+ ++K+ + A CL Sbjct: 133 QLDGLTYAQIAEQLQVSLITIKRDMRTAFLACL 165 >UniRef50_C7PJC0 Transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJC0_CHIPD Length = 198 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + F+ LY H + L+ DI QD F + I+ Sbjct: 14 LITMLKRGDMDAFDILYTRHWSAMYQSAYYLLRDQSACMDIVQDIFAWLWEKRDQLDIQT 73 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 S+L T K + + R + + + E L+ + P P+E + ++ + G Sbjct: 74 VPSYLRTAVKFKVANYIRSGNIREDFYEELSKLTIATLPGPQELLELTDLKTIIQQAVTG 133 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L K RE FLLS+ L+ +IA L +S+ +V+ A++ + Sbjct: 134 LPEKCREIFLLSRDGQLSNQQIAEVLNISVKTVEAQKTIALKRIRAAVEPH 184 >UniRef50_C6Y1F4 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y1F4_PEDHD Length = 208 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + T +F LY L + + R ++ A +I QD F++V L Sbjct: 23 LLIKLTNHDHHSFHELYNRFSVQLYANILRMVRDQDLAQEILQDVFVKVWEKRELIDPEK 82 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++L IAK + D FR+ A+EK + EE E+ QL + +D Sbjct: 83 PFNAYLFRIAKNTVYDHFRKIAMEKKLETHMLSNGTETYSHIEEELIYKESSQLFLNAID 142 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L+ + ++ F L +L+G +Y E+++ L +S S+V ++ K+ + L Sbjct: 143 KLSPQRKQVFTLCKLEGKSYHEVSNLLSISTSTVSDHLLKSNKFIRAQLL 192 >UniRef50_Q88Q31 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas putida KT2440 RepID=Q88Q31_PSEPK Length = 178 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 1/160 (0%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAK 70 E LY +HHGW++ WL RKL +A DA ++AQD F+R++ + R++L +++ Sbjct: 13 DLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHARAYLGRMSR 72 Query: 71 RVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 VD +RR +E+AYLE+LA PE APS E + LETL+ L +M + + + EAF Sbjct: 73 NACVDFWRRRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQRVAEAFS 132 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 ++QL G+ EIA +LGVS SV Y+A+A+ CLL E Sbjct: 133 MAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQCLLLEAE 172 >UniRef50_C3QPP8 RNA polymerase ECF-type sigma factor n=7 Tax=Bacteroides RepID=C3QPP8_9BACE Length = 207 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 1/169 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL-STIRDPR 62 R F LY + L + + ++S A+DI QD F V + + Sbjct: 23 RLIDGDEEAFCELYAAYKNRLLYFALKFVKSHEFAEDIFQDAFTVVWQTRRFINPEASFS 82 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 S+L TI + +++ R A E E + + +++ L+ L Sbjct: 83 SYLYTIVRNRILNQLRDMANEDQLKEQILSQAIDSTNETNNHILLNDLKEIIARALEQLT 142 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + RE F +S+ +++ EIA LGVS+ +V+++++ +++ + +Y Sbjct: 143 PRQREVFKMSRELQMSHKEIAEALGVSVHTVQEHISLSLKVIRSYLTKY 191 >UniRef50_C4TZ61 Sigma factor, ECF subfamily n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TZ61_YERKR Length = 179 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 5/152 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 + ++ L ++ RKL++ A+D+AQ+TF+R + IR RS L IA+ +++D Sbjct: 4 FEKYYTELYRFINRKLRNRDHAEDLAQETFIRALTVP--LPIRSHRSLLYRIARNLLIDH 61 Query: 77 FRRNALEKAYLEMLALMPEGGAPS---PEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 +RR A + APS P E + + L+ ++ L + REAF+L + Sbjct: 62 YRRPDTHIHEPSEEADESDFAAPSYLQPYELIEESQYNALMTQTIEALPPRCREAFILHR 121 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 DGL+ E+A ++G+SI+ V+K++ +A+ C Sbjct: 122 FDGLSQKEVASQMGISINMVEKHIIRAMLACR 153 >UniRef50_Q82VL0 Probable sigma-70 factor, ECF subfamily n=2 Tax=Proteobacteria RepID=Q82VL0_NITEU Length = 178 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 2/154 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI--RDPRSFLCTIAKRVM 73 LY HHGWL WL KL +A DA D+A DTFLRVM S+ + +PR+ L IAK ++ Sbjct: 24 LYTDHHGWLYGWLRCKLGNACDAADLAHDTFLRVMASQRMPVHLGEEPRALLTHIAKGLV 83 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 +D +RR +E+AYLE LA +PE PSPE R LE L +++ML GL +TR+ FLL+Q Sbjct: 84 IDHWRRQDVERAYLEALAHLPETEIPSPETRLLILEALCRIETMLRGLPVRTRDIFLLAQ 143 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 LDGLTY +IA + G S+ ++K+++ A CL+ Sbjct: 144 LDGLTYRQIADQTGFSLITIKRHMRTAFVACLML 177 >UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G5V6_CHLAD Length = 202 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 4/177 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + + S LY H + R L +A A+++ Q+TF RV ++ Sbjct: 18 LMELVAAGDSTALAQLYDRHARVVYGLALRMLGAAEPAEEVVQETFWRVWKRAATFQMQG 77 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYL---EMLALMPEGGAPSPEERESQLETLQLLDS 116 ++ IA+ + +D RR + E L + E+ + E +L+ + Sbjct: 78 AFLPWMFGIARNLCIDELRRRQVRPMTSGAGEELLTSLPDQMQNVEQATLEAERRRLISN 137 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L L RE L+ GL+ EIA L + ++K + ++ L YG+ Sbjct: 138 ALADLPPDQREVIELAYFGGLSQREIAEHLQSPLGTIKTRIRLGLQKLKQALLHYGI 194 >UniRef50_A6E6E9 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6E9_9SPHI Length = 204 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 86/172 (50%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + ++ + LY + L ++ R +S F A+D+ DTF+++ S Sbjct: 12 LLEQLKSGDQRALSELYHRYSNRLTYYVQRTSKSPFLAEDVVHDTFIKIWQSREQLDPSK 71 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 S+L IAKR +++L +R E + L + S E+ + E+ +L+++ ++ Sbjct: 72 PFESYLFVIAKRTLLNLLKRARHETSILAEIKKYAIIEDESTEKFLAYQESNRLINAAIE 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L+G+ ++ F+ ++ ++Y + A L ++ S+V K+++KA++ + + Sbjct: 132 TLSGQVKKTFIYCRVQDMSYKQAAEALNITESTVNKHMSKALQTIREYVRAH 183 >UniRef50_C9KVM7 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KVM7_9BACE Length = 183 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 MS++ FE Y ++ +K++ +S DA+DIAQ+ FL++ L ++ Sbjct: 1 MSEKVEDLDVR-FERFYAANYPRVKNFAKLLTKSEEDAEDIAQNIFLKLWTRPELWQEQE 59 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE-----GGAPSPEERESQLETLQLL 114 S+L T+ + + +LF+ +E+ Y + + S E E L L+ Sbjct: 60 TMTSYLYTVTRNEIFNLFKHQKVEQEYEDKIMKAQLIGDLCDEDTSLLENLYYKEVLLLV 119 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 LD L K R+ F +S+ +GL++ EIA KL + + +V+ ++ K + + Sbjct: 120 KMTLDQLPPKRRQIFEMSRFEGLSHKEIAEKLQIPLRTVEDHIYKTLTELRKVLM 174 >UniRef50_C8WQW1 RNA polymerase sigma factor n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQW1_ALIAD Length = 191 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 3/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + E+LY + S+ R + A++I QD F++V Sbjct: 10 LLAAIARGQRDALEALYDRFARLVYSFAYRVTGNVSHAEEIVQDVFVKVWRQAHAYNPAL 69 Query: 60 -DPRSFLCTIAKRVMVDLFRRNALEKAYL-EMLALMPEGGAPSPEERESQLETLQLLDSM 117 ++L TIA+R +DL RR ++ E L + AP+P+ Q + + Sbjct: 70 GKVSTWLLTIARRSAIDLHRRERRQQHESGEELFPILPDHAPTPDRVAEQSDLRSRIRQA 129 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L L + R+ G T +EIA + G S+ +VK A++ Sbjct: 130 LAKLPEEQRQVVEWMYFQGYTQNEIAERFGWSLGTVKSRARLAMQKLRDELQ 181 >UniRef50_B4SLV1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Stenotrophomonas RepID=B4SLV1_STRM5 Length = 174 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 99/168 (58%), Gaps = 1/168 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 M +S Y HHGWL WL R+ +A A D+ QDTF+R++ S +R Sbjct: 1 MPMAVPAASSTALAGFYREHHGWLLGWLRRRTHNADCAADLTQDTFVRLLGRRVDPSELR 60 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 PR++L TIA ++V+ ++R LE+AYL LA PE PS EER L+ L + ML Sbjct: 61 LPRAYLSTIAHALLVNHWQRADLERAYLTALAAQPEPVHPSAEERTQALQLLHAIADMLS 120 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 GL + R AFL+++L GL Y+EI +LGVS VKKY+A+A+ HCL Sbjct: 121 GLAERPRRAFLMARLSGLGYAEIGQQLGVSERMVKKYMAQAMLHCLRL 168 >UniRef50_C6W0P8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W0P8_DYAFD Length = 180 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 4/174 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + + + L+ ++ L + T A+++ D F ++ T+ Sbjct: 10 LISLIKQGDNRALDCLFRKYYYSLCRFATYLNNRKDLAEEVVADVFFKIWEKRESLTVEK 69 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + RS+L T + ++ ++ EK +E L P P++ E + +++ Sbjct: 70 NVRSYLFTATRHTCINYMKQ---EKYVMEELNDDMIEETPGPDDELMYHELETRITDLIN 126 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L K + F L++ +G TY+EIA L +S +V+ + KA++ L + Y + Sbjct: 127 YLPQKRKAIFQLNRFEGFTYNEIAEILSLSAKTVENQMGKAIKQLKLLQKTYQI 180 >UniRef50_A5FID8 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FID8_FLAJ1 Length = 203 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 10/175 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + + + + L T+H L + +++ + A+DI Q+ F++V L Sbjct: 12 LIESLKNGDEMAYTYLIDTYHHKLCVYANSLVKNVYSAEDIVQNVFIKVWEQRTRLKPEH 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNA----LEKAYLEMLALMPEGGAPSPEERESQLETLQLLD 115 +SFL + +DL+R+N LEK+Y + L + + E+ E+ L ++ Sbjct: 72 SLKSFLYKMTYNEFIDLYRKNQSLFSLEKSYYDALNGIVQE-----EDSEAFQRVLNAVN 126 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + L K +E F+LS+ +GLT EIA L VSI +V+ + KA E Sbjct: 127 KEIQNLPPKCKEVFILSKKEGLTNIEIAEHLDVSIKTVEAQITKAFSILRTSLEE 181 >UniRef50_A6EIK6 RNA polymerase ECF-type sigma factor, putative n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIK6_9SPHI Length = 195 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 1/155 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIAKR 71 F +Y + L + R L A DI Q+ F + +I S+L T + Sbjct: 24 FNEVYNRYWSQLFLHVRRMLGDDELAKDIVQEVFTNIWERSPDFSISTSLSSYLYTAVRN 83 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 + + ++ ++ +L+ +A G +E + ++ + + K RE F L Sbjct: 84 RVFNEIKQQKVKSVHLQDIAAFFSRGQYEADEALRYQQLKSAIELEISKMPEKMREIFEL 143 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 S+ L++ +IA + +S +V+ V +A+ Sbjct: 144 SRHQYLSHKQIAALMNISEHTVRTQVQRALRLLRQ 178 >UniRef50_A1ZZ70 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ70_9SPHI Length = 203 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 6/176 (3%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD- 60 ++ + FE ++ ++ L ++ L+ ++++ Q+TF+ + I+ Sbjct: 15 VEKISAHNQSVFEYVFKRYYQELCNFAFMYLKVEQSSEEVVQETFINIWEKRQKLKIQSS 74 Query: 61 PRSFLCTIAKRVMVDLFRRNALE---KAYLEMLALMPEGGAPSP--EERESQLETLQLLD 115 +++L T K ++ + A + K++ P A + EE E +L Sbjct: 75 IKAYLYTSVKNRSINYLKSKATQVSQKSHSTSSEEHPIHIAENATVEEAMHNAELQHVLS 134 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + L + E F L++++GL+Y ++A +LG+S +V+ + A + +F ++ Sbjct: 135 QAIAALPKRCSEIFTLTRIEGLSYQQVADQLGISKKTVEAQMGIAFKKLRIFIKQH 190 >UniRef50_C6Y1G9 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y1G9_PEDHD Length = 195 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 ++D + L F +Y + + + L++ DA D+ Q+ F + ++L++ Sbjct: 12 LTDLVRKSDELAFAEIYQRYWTIMYMHALKMLKNEEDARDVIQELFTTLWSKCQSLTSSI 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L TI + ++DL + +LE LAL E E ++ E +Q LD + Sbjct: 72 NLSGYLYTIVRNKVLDLIEQKKTRSIHLESLALYLEEHHNKTLEDLTEREMMQALDHEIG 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L GK R F + + TY EIA L +S +VKK V+ A++ + Sbjct: 132 QLPGKMRVIFQMRVKEHKTYKEIAEALEISDKTVKKQVSNAIKLIKPKLSGF 183 >UniRef50_A4XVR2 RNA polymerase, sigma-24 subunit, ECF subfamily n=25 Tax=Pseudomonadaceae RepID=A4XVR2_PSEMY Length = 174 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 71/162 (43%), Positives = 104/162 (64%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 ++ LY H WL WL + L A+D++QDTF+R++ L + R+PR+ L Sbjct: 8 SSNQQLVGLLYRDHRDWLFGWLRKSLNCTQRAEDLSQDTFVRLLGRPDLHSPREPRALLT 67 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 TIA+ +++D FRR+ALE+AYLE LAL PE PSPEE+ LE L +D +L L+ K R Sbjct: 68 TIARGLLIDQFRRSALERAYLEELALAPEALQPSPEEQALALEQLSEIDRLLGHLSSKAR 127 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 AFL ++LDGL ++EIA +LGVS S V++Y+A+ + C + Sbjct: 128 AAFLYNRLDGLGHAEIAERLGVSPSRVRQYLAQGLRQCYIAL 169 >UniRef50_B4EXQ8 ECF-family sigma factor n=7 Tax=Enterobacteriaceae RepID=B4EXQ8_PROMH Length = 182 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 5/156 (3%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 Y + +G L + ++ + DADD++QD F + + + +++ R+FL IA V++D Sbjct: 15 YQSTYGQLVRFFQKRTGNHHDADDLSQDVFTLWLNRKEQTPVQEQRAFLFKIANHVLIDH 74 Query: 77 FRR-NALEKAYLEMLALMPEGGAPSPE----ERESQLETLQLLDSMLDGLNGKTREAFLL 131 +R+ + Y E L + E + L LL +D L + REAF+L Sbjct: 75 WRKNQKQKNIYQEDYQLEDAVQTYTTELDPGHVLEHQQRLDLLTQAIDTLPPRRREAFIL 134 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + DGL+ SEIA ++ +SIS V+K++A A+ HC + Sbjct: 135 YRFDGLSQSEIAEQMEISISMVEKHIAAALLHCKRY 170 >UniRef50_C3QAU5 RNA polymerase ECF-type sigma factor n=4 Tax=Bacteroides RepID=C3QAU5_9BACE Length = 181 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 70/161 (43%), Gaps = 1/161 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 F + Y T++ L +L +DI Q+ FL++ ++ I +++L Sbjct: 10 DIQAFRNYYDTYYEQLCCFLNFYTHDVAVIEDIIQEVFLKLWENKDCIEITYIKTYLFRA 69 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 AK +++ R LE + ++++ ++ L + RE Sbjct: 70 AKNRVLNYLRDEENRHQLLENWFNQQLEERKYKD-CFDIDALTKVVNRAIEQLPERCREI 128 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 F LS+ +GL+Y +IA +LG+S+ +V+ ++ A++ Sbjct: 129 FSLSRKEGLSYRQIAERLGISVKTVETQISIALKRIREILS 169 >UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=6 Tax=Myxococcales RepID=Q1D3E5_MYXXD Length = 223 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 14/187 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + + FE+L H + +++ R A+D+ Q+T+L+V+ S + Sbjct: 24 LMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVRSAGDYTPKA 83 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEM-------------LALMPEGGAPSPEERES 106 ++L TIA+ + VD R+ + +A L SPE Sbjct: 84 KFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAERDESRPLGEGLPDAGASPERGAY 143 Query: 107 QLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 LL+ L L + RE F L + G+ + +IA GVS ++VK + A++ Sbjct: 144 NARLRPLLERALATLPDEQREVFTLREYSGIPFKDIAEVTGVSENTVKSRMRYALDGLRR 203 Query: 167 FRLEYGL 173 E G+ Sbjct: 204 RLAEMGV 210 >UniRef50_A6EEG5 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEG5_9SPHI Length = 197 Score = 163 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 79/172 (45%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 + F+ +Y +++ + S+ + ++S DA++I Q+ FL++ I Sbjct: 12 LLTEIAGGNQRAFKVIYDSYYRKIFSYALKYVKSETDAEEIIQEVFLKLWLRDPNSLPIG 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + + + + +D+ RR LE +A+ + EE +T ++LD + Sbjct: 72 NLDGYFQVLVRNRSIDVLRRKVLENHVDLDVAVNWQEAHNHTEELIILKDTKKVLDEGIK 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + R+ + L DGL Y E A +L +S+S+V ++ A++ + ++ Sbjct: 132 LLTPQQRQVYKLCHQDGLKYEEAAKELNLSVSTVHSHMKLALKFLREYLKQH 183 >UniRef50_A7AI75 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AI75_9PORP Length = 191 Score = 163 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 3/173 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-D 60 ++ + F++LY + L + +S+ A+DI QDTFL++ ++ Sbjct: 11 IEKLKRGSYEAFDTLYDMYADSLYGFALLHTKSSVQAEDIVQDTFLKLWNMRASLSVEGS 70 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGG--APSPEERESQLETLQLLDSML 118 +S L TIAK ++D+FR+ + + + + + E+ + + L Sbjct: 71 FKSMLFTIAKNHVIDVFRQQINRPDFEDYIRFCEDEHLLDNTSVEKIYYDDFIDKLAIAK 130 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L R F +S+ +G++ +EIA +S +VK +++ A++ +Y Sbjct: 131 QKLTPAQRNIFEMSREEGMSNAEIAALSDISEQTVKNHLSAALKILREELRKY 183 >UniRef50_C6XUX4 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUX4_PEDHD Length = 201 Score = 163 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 83/173 (47%), Gaps = 1/173 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETL-STIR 59 + + L FE +Y ++ + + + ++S DA +I QD F++V L + Sbjct: 14 LLIALKSGDRLAFEKIYQSYSPRIFLNILKMVKSVEDAQEILQDVFIKVWEKRGLIDPEQ 73 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +S+L I+K + + R+ L+K L+L EE + E Q + + ++ Sbjct: 74 SFKSYLFQISKFTVYNFIRKLNLDKKLKTYLSLENTELYTHIEEGIAYRENDQFILNAIE 133 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L + ++ + L +++G +Y+E+ +LG+S S++ ++ KA + +G Sbjct: 134 ELPSQRKQIYKLCKIEGKSYAEVGKQLGISSSTINDHIVKATKFLKQRHASFG 186 >UniRef50_C7PNP3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PNP3_CHIPD Length = 196 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 2/171 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPR 62 R F +Y +H L +L R + A+D+ D FL+V + ++ Sbjct: 13 RMMQGDESAFTKIYRHYHASLYVYLLRFCKVPSLAEDLVHDVFLKVWEIRDRINPELSFT 72 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEG-GAPSPEERESQLETLQLLDSMLDGL 121 +L IA+ ++ + +K + + L E A PE++ E +L L + Sbjct: 73 GYLYRIARNHVIKTIDKLTTDKNFRDQLFSQLEDVSAVQPEQQVRTKEYDRLFQEALVRM 132 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + F L + +G +Y E+A LG+S ++VKK++ + + +G Sbjct: 133 PPQRLNVFKLCRQEGKSYDEVALLLGISRNAVKKHMVLGMRFIYDYVHRHG 183 >UniRef50_A9BUB1 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Proteobacteria RepID=A9BUB1_DELAS Length = 187 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 107/158 (67%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLC 66 + +LY HHGWL+ WL RKL + F+A DIA DTF+ V+ S I PR FL Sbjct: 24 RAPADPVHTLYVEHHGWLQGWLRRKLGNVFEASDIAHDTFVNVITSGMAGRIEQPRPFLA 83 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 T+A+ +++ RR LE+AYL+ LAL+P APSPEER LE+LQ +D LD L K R Sbjct: 84 TVARHLVIRQHRRRLLERAYLDTLALLPAELAPSPEERLIALESLQAVDQALDALAPKVR 143 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164 EAFLL+ L+GL+Y++IA +LGVS++SVK+Y+A+ E C Sbjct: 144 EAFLLAHLEGLSYADIATRLGVSMTSVKRYLAQGYERC 181 >UniRef50_C7PPV6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PPV6_CHIPD Length = 187 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 73/163 (44%), Gaps = 3/163 (1%) Query: 7 TTASLTFESLYGTHHGWLKSWLTRKLQSA-FDADDIAQDTFLRVMVSETLSTIRD-PRSF 64 + + F++++ ++ L + L +A+DI + F + + I ++ Sbjct: 17 SGSEDAFDAIFKRYYEGLLQFAKVLLPYPTDEAEDIVAEMFCTLWHNRRQIDISTTLSAY 76 Query: 65 LCTIAKRVMVDLFRRNA-LEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 L + + D +R+ + E LA P+ G P+ + + + S++ L Sbjct: 77 LYVSVRNRVFDYYRKRKTIFNLPEEALADTPDVGYQQPDHQLMYKDITSQIQSLVAQLPP 136 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + R F + + +G +Y EIA L +S++SVK ++ +A++ Sbjct: 137 QMRLVFKMHRYEGFSYDEIAGLLNISLNSVKTHMFRALKFLKA 179 >UniRef50_D2QQH7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Flexibacteraceae RepID=D2QQH7_9SPHI Length = 194 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 76/166 (45%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T F +Y + L S K+Q+ +++ QD FLR+ I ++L Sbjct: 16 RTGDENAFREIYLRYWKKLFSIARHKIQALDAVEELVQDIFLRLWERRDSLQIDRLDAYL 75 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 T + ++ + +++ Y + + + +E+ E + ++ L+ L KT Sbjct: 76 FTAVRYACINHIKSALVKEKYADYAYDHYNDASYATDEQLDLDELMDAVEQQLNDLPEKT 135 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R+ F L++L+ + EI+ L V +V+ ++++A++ ++ +Y Sbjct: 136 RQIFRLNRLEYQSVKEISTSLKVPERTVEYHISQAIKSLRVYLRDY 181 >UniRef50_B0KIQ2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KIQ2_PSEPG Length = 176 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 76/164 (46%), Positives = 108/164 (65%), Gaps = 4/164 (2%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET----LSTIRDPRSFLCTIA 69 LY WL +WL ++ + A D+ QD F+RVM + L +R+P+ +L TIA Sbjct: 13 SQLYRAQSKWLHNWLKPRVNCSHLAADLVQDVFVRVMSAADAAVKLEAVREPKGYLATIA 72 Query: 70 KRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129 +R+M+D RR LE+A+L++LA PE SPE+R + L+TL LD+ML L K REAF Sbjct: 73 RRLMIDHLRRVHLERAWLQVLAEQPEALDISPEQRLALLQTLFELDAMLASLGPKVREAF 132 Query: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 LLSQ+DG+ Y +IA +LG+S SV++YVAKA EHC+++ L GL Sbjct: 133 LLSQIDGMPYKQIAAQLGISEVSVRRYVAKAAEHCMIYSLGLGL 176 >UniRef50_D0MF51 RNA polymerase sigma factor n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MF51_RHOM4 Length = 196 Score = 162 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 3/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 ++ R F + +H +L +L R + A+D+ Q FL + + R Sbjct: 26 LARRIRNGDQQAFRMFFERYHAFLLHYLERMGVAPEVAEDLVQQAFLAIWERRTQIDPNR 85 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 R+FL I ++ FR + + + +P + + L+ + Sbjct: 86 SLRAFLFRIGHNRALNHFR--DTRRLHSDEALPELSDPSPGADRQTDAALLRARLEEAIA 143 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + R F L L LTY E A LG+S +V+ + +A+ ++ Sbjct: 144 RLPERRRAVFELCFLQDLTYREAAEVLGISPKTVENQMTQALRQLRAALADF 195 >UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured marine microorganism HF4000_APKG8C21 RepID=B3TA07_9ZZZZ Length = 211 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 5/177 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + R F + + + + R L A+DI Q+TF+ + + Sbjct: 24 LIGRTQGGDQAAFNLIVERYQSNVYNLSARILGDRTAAEDITQETFISAYRAISRFRGGS 83 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALM-----PEGGAPSPEERESQLETLQLLD 115 R++L IA D R + +L+ P PSPE+ + E L Sbjct: 84 LRAWLLRIASNHSYDWIRASRRRPQVSLDQSLLNPGFSPPSTGPSPEQEALRSELRVELQ 143 Query: 116 SMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + L R +L + G++Y E A SI +VK +++A L++G Sbjct: 144 RAILTLPPDQRTTLVLIDVQGMSYEETAEATRASIGTVKSRMSRARSRVRNHLLQHG 200 >UniRef50_Q6FD19 Putative RNA polymerase sigma factor n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FD19_ACIAD Length = 171 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 92/156 (58%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 LY H+GWL WL +KL SA +A+D+ QDTF +++ S+ L I+ P+++L T AKR++ Sbjct: 13 AELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRIL 72 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 +D R +E++YLE LA SPE+ ++ L L +LDGL + + AFL+ Sbjct: 73 IDRARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHY 132 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 +DGL+ +IA +L V+ ++ + K + HC Sbjct: 133 IDGLSLVDIATRLKVTSRTIHYDLVKTLSHCYCVLK 168 >UniRef50_C3QRM6 RNA polymerase ECF-type sigma factor n=10 Tax=Bacteroides RepID=C3QRM6_9BACE Length = 183 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 2/169 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRD 60 DR + F + L ++ + A+++ D F V + TL I + Sbjct: 8 IDRIINSDEAAFCRFMERYSSRLYHYVFALIGQKEPAEEVVSDVFYEVWKNRKTLGGIEN 67 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +++ TI R + R+ + L+ + SP+E E ++ +++ + Sbjct: 68 MNAWIQTITYRKAISYLRKETGKTELSLDGIGDFIFAPIQSPDEAMISKEEMEKINNAIQ 127 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L K + F L++++GL Y EIA L +S+ ++ ++A A+E Sbjct: 128 QLPPKCKHVFFLAKIEGLPYKEIADILNISVKTINNHIAFALEEIAKNL 176 >UniRef50_C6IQT2 RNA polymerase sigma factor n=3 Tax=Bacteroides RepID=C6IQT2_9BACE Length = 195 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 2/174 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKL-QSAFDADDIAQDTFLRVMV-SETLSTI 58 + + FE LY + G L +++ R + + A+++ Q F+RV E + Sbjct: 10 LLTELKNGSFQAFERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWEVRERVEPE 69 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 SFLCTIAK +++++++R +E Y E L EE + +DS+ Sbjct: 70 SSFISFLCTIAKNLLMNMYQRQTVEYVYNEYLKNTGVDRDSQTEESIDLRFLNEYIDSLA 129 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + L + ++ F+LS+ T EIA +G+S S+V ++ AV+ +++ Sbjct: 130 EELPAQRKKIFILSKRQNYTNKEIAEMMGISESTVATQLSLAVKFMREQLMKHY 183 >UniRef50_C6CDZ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDZ4_DICDC Length = 179 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 1/169 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPR 62 T + + LY HHGWL+ L ++L + DA D+A D F++++ + R Sbjct: 3 AVNTASPSDLQQLYQQHHGWLQGLLCKRLGNLCDAADLAHDIFVQLLTRPRHFDSHEGAR 62 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 ++L +A+ + VDL+RR +LE+A+ + L + A S E+ LETL +D+ML L Sbjct: 63 AYLSVMAQGLCVDLWRRRSLEQAWRQSLNDCEQVHALSAEQHTIILETLYQVDAMLRQLP 122 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 R AF+LSQ+ G TY++IA LGVS VKKY+A+A+ HC+L E+ Sbjct: 123 DNVRVAFILSQIQGQTYAQIAITLGVSERMVKKYMAQAMLHCILLEAEH 171 >UniRef50_C1DDL3 Sigma factor, FecI family n=3 Tax=Proteobacteria RepID=C1DDL3_AZOVD Length = 170 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 110/167 (65%) Query: 6 TTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFL 65 T+ + +LY +H WL+ WL+R+LQ DA D+ QDTFLR + S L I++PR+FL Sbjct: 4 TSDPNALLATLYRENHRWLRGWLSRRLQCPQDAADLTQDTFLRALNSRQLEQIQEPRAFL 63 Query: 66 CTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKT 125 T+AKR++ +L+RR LE++YL+ LA +PE APS E+ E ++ +D +LDGL + Sbjct: 64 GTLAKRLLCNLWRRRQLERSYLDALAQLPERFAPSEEDIALVREAIEAIDRLLDGLPLRA 123 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 R AFLL++LDGL IA +LGVS+++V++ + +A HCL E Sbjct: 124 RRAFLLNRLDGLGQQAIAERLGVSLATVERDLRRAYIHCLTRDPEQP 170 >UniRef50_C6DKM4 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Proteobacteria RepID=C6DKM4_PECCP Length = 180 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 1/162 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTI 68 S LY HHGWL+ L ++L + DA D+AQD F+R+++ + R++L + Sbjct: 9 SADMHQLYCQHHGWLQGLLRKRLGNLCDAADLAQDVFVRLLLKPRQFDSHAGARAYLSVM 68 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 A+ + VDL+R+ +E+ +L LA PE A S E+ LETL +D+ML L K R A Sbjct: 69 AQGMCVDLWRKREIERVWLASLAEQPEPVALSAEDSNIILETLYQVDAMLRALPEKVRAA 128 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 F+++Q+ G Y +IA LGVS VKKY+A+A+ HC+L E Sbjct: 129 FIMAQVQGRPYRDIAEALGVSERMVKKYMAQAMLHCVLLEAE 170 >UniRef50_UPI000174534D RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174534D Length = 185 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%) Query: 21 HGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRN 80 + L+S+ ++ +A D+ Q+ F RV+ + + + PRS L IA+ +++D R Sbjct: 29 YERLQSFFQGQVGCTHEAKDLTQEAFTRVLSWQPKAQVTQPRSLLFRIARNLLIDRSRSR 88 Query: 81 ALEKAYLEMLALMPEGGAPS----PEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 A L P P++ + E L+ + + L + RE F+LS+ G Sbjct: 89 AKSHEISGPLTDEQLAATPDQSTAPDQHLAARENLRKVQVTIATLPDRCREVFILSRFGG 148 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L+Y EIA +L ++ S+V+K++ +A+ C + Sbjct: 149 LSYPEIAERLAIAPSTVEKHMIRALTACRACMDD 182 >UniRef50_C3Q8S3 RNA polymerase ECF-type sigma factor n=8 Tax=Bacteroides RepID=C3Q8S3_9BACE Length = 181 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 4/158 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKR 71 F+ + + +K++ + L+S DA+DIAQD F+++ S+L T+ + Sbjct: 13 FKKFFDLNFPKVKTFAWQLLKSEEDAEDIAQDIFVKLWEKPDLWLEREKLDSYLYTVVRN 72 Query: 72 VMVDLFRRNALEKAYLEMLAL---MPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 + + + A+E YL++ A M E G P+P++ E + L+ + + R Sbjct: 73 HIYNFLKHKAVEYDYLDVAAEKMRMAELGLPTPDDEFCAHELELFVQMALERMPEQRRRV 132 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 FL+S+ +G+T EIA KL VS+ +V++++ KA++ Sbjct: 133 FLMSREEGMTSPEIAEKLNVSVRTVEQHIYKALQDLKK 170 >UniRef50_Q8EN30 RNA polymerase ECF-type sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN30_OCEIH Length = 187 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 2/171 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS--TI 58 + R E LY + L S+ R + A++ QD F ++ + Sbjct: 8 LFRRIQEKDEEALEQLYDRYEKLLFSFSLRMTNNETIAEEAVQDVFTKLWTKKLPYKKEK 67 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 S+L TI + +DL R+ + + + E P+PEE E Q + S + Sbjct: 68 GKFSSWLLTITRNACLDLIRKTKTDNVEFQERDSLKEDNEPTPEEHVEWNEKRQQIKSAM 127 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 LN + +E L GL+ S+I+ + + +VK V A+ H Sbjct: 128 QSLNDEQKEIIELFYFKGLSQSKISEACNIPLGTVKGRVRLALNHLNKQME 178 >UniRef50_Q4K9A6 RNA polymerase sigma-70 factor, ECF subfamily n=19 Tax=Pseudomonas RepID=Q4K9A6_PSEF5 Length = 177 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 15 SLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 +L ++ L +L KL + A+D+ D ++RV+ + + I PR+FL A +++ Sbjct: 17 ALLENYYRELMCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVI 76 Query: 75 DLFRRNALEK-AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 D RRNAL + LE+L PSP+ + L++L L L RE+FLL + Sbjct: 77 DGHRRNALRQSEPLEVLDNEERYFNPSPQTSLDHGQRLEMLQRALAELPRLCRESFLLRK 136 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L+GL++ +IA +LG+S S V+K++ A++HC + Sbjct: 137 LEGLSHPQIAEQLGISRSLVEKHIVNAMKHCRSRLRQ 173 >UniRef50_A6LGK0 RNA polymerase sigma factor n=3 Tax=Parabacteroides RepID=A6LGK0_PARD8 Length = 188 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 1/169 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRS 63 FE+L+ ++ + ++ L A+D+ Q+ FL++ + ++ + Sbjct: 11 LKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDA 70 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L TIA+ ++ L + E L EER + ++S+++ L Sbjct: 71 YLFTIARNLVYKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREYINSLIEELPL 130 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 RE F LS+ + L+Y EIA +L +S +V+ +++A+ G Sbjct: 131 SRREIFRLSRHEHLSYKEIAERLSISEKTVETQLSRALRFLRDRLSSDG 179 >UniRef50_C6XT18 RNA polymerase sigma-70 factor n=4 Tax=Bacteroidetes RepID=C6XT18_PEDHD Length = 190 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 1/167 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + L + ++ + L R + + +DI Q+ FL + + T+ Sbjct: 12 LVAMLNKGDQLAYTEIFERYKIILYKHAIRLINDQEEVNDIIQELFLTLWQKKGTIILTT 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 S+L + + D +E YL+ + G E++ E +++ + Sbjct: 72 SLSSYLYQSVRNRIFDFIAHQKVENNYLDSIRDFALNGQLITEDQIRMKELNIIIEKEIS 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L + R+ F +S+L L+Y +I +L +S +VK+ V AV+ L Sbjct: 132 ALPERMRKVFEMSRLTDLSYKQIGERLDISDKTVKQQVYNAVKILKL 178 >UniRef50_D0J6Z4 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=cellular organisms RepID=D0J6Z4_COMTE Length = 146 Score = 161 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 72/144 (50%), Positives = 96/144 (66%) Query: 26 SWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKA 85 WL RK+ +AFDA D+ QDTF+R++ + PR++L T+AK V+V+ RR ALE+A Sbjct: 3 GWLRRKVGNAFDAADLTQDTFVRILGVREPPRLESPRAYLTTVAKGVLVNWCRRQALERA 62 Query: 86 YLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHK 145 YLE LAL+PE APSPE R LE L +D+MLD L R FLLSQL+ + Y +IA + Sbjct: 63 YLEALALLPEPEAPSPEHRALVLEALHEIDAMLDALPPLVRRTFLLSQLEDMKYDDIASQ 122 Query: 146 LGVSISSVKKYVAKAVEHCLLFRL 169 LGVS++SVK+Y+A A CL Sbjct: 123 LGVSLTSVKRYMALAFRQCLALME 146 >UniRef50_C1DIF0 RNA polymerase sigma factor, FecI family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DIF0_AZOVD Length = 188 Score = 161 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 + H L +L ++ S A+D+ Q+T+LR+ I +PR++L IA + D Sbjct: 34 FIEHRDALLGYLRQRFGSPSLAEDLVQETWLRLARHTPERDIVNPRAYLFRIATNLGTDH 93 Query: 77 FRRN--ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 R +E + A P + L+ L ++D L + RE F+L ++ Sbjct: 94 LRHQNMGVEIQAEDEEIAQVPAQAVDPAREVQSHDDLERLLEIIDNLPPRCREIFILCRV 153 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 +GL++++IA +L +S S+V + KA+ Sbjct: 154 EGLSHAQIAERLNISKSTVVSQMVKALARLEQAME 188 >UniRef50_A6LIX1 RNA polymerase ECF-type sigma factor n=8 Tax=Bacteroidales RepID=A6LIX1_PARD8 Length = 184 Score = 161 bits (410), Expect = 7e-39, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 78/171 (45%), Gaps = 1/171 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRD 60 ++ F L+ +H + ++ ++S DA+D+ Q+ FL++ + + +R Sbjct: 8 LEQFAAGNHTAFRELFMRYHLKVYYFVLGLVKSESDAEDLTQEIFLKLWTHRSRFTEVRT 67 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 S+L +AK + + LE + E +P E + L+D +++ Sbjct: 68 FGSYLYVLAKHTAFNYIESRRVNLESLERAGVEDEERGDTPYEDLVAKDLRLLVDMIVET 127 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + + + + +S+ +GL+ +EIA L +S +V+ ++ A++ L + Sbjct: 128 MPPQRKMIYRMSRDEGLSNTEIAENLQLSKKTVENHLNLALKELRNAVLTF 178 >UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU8_PELCD Length = 214 Score = 161 bits (410), Expect = 7e-39, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 9/180 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +R F L H + + R L +A+D+AQ+ FLR+ S + Sbjct: 30 LLERIRQGDEGAFTQLVSGHLSSVVNLAYRMLGDRQEAEDLAQEAFLRLHRSLPSFRGDC 89 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKA------YLEMLALMP--EGGAPSPEERESQLETL 111 +++L + R+++D RR + + + + + + SP ++ ET Sbjct: 90 RIKTWLYKVVSRLVIDHIRREQVRRRIFFFRKHEDDPDPVANFADPSASPSDQLLGQETR 149 Query: 112 QLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 Q L ++ L+G+ R F+L +GL EIA L + +VK ++ +AV+ + Sbjct: 150 QKLFKAMEKLSGRQRAVFVLRHQEGLPLKEIAQVLHLKEGTVKAHLHRAVQCIRQEFTDQ 209 >UniRef50_D1PZC2 DNA-directed RNA polymerase sigma subunit RpoE n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PZC2_9BACT Length = 163 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 14 ESLYGTHHGWLKSWLTRKL-QSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 + ++ T++ L + L + +A+D+ Q+ F+++ + +++L + + Sbjct: 4 DIIFKTYYRPLCIYAMHYLSGNMEEAEDVVQECFVKIWQQKA----DSSKAYLYATVRNM 59 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 +D RR ++ + G + + + + L + +D L + R+ FL+S Sbjct: 60 CIDCLRRKQIDTV---EIRPQDLEGYITDSDAQERSFREAELWTAIDSLPERCRQIFLMS 116 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + DG+ Y EIA +L +S +V+ ++KA++ R + G Sbjct: 117 KRDGMKYHEIAEELNLSEKTVEHQISKALKQLKRHRTDLG 156 >UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU56_HALO1 Length = 216 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 76/185 (41%), Gaps = 14/185 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + DRA + F +LY +H + + +Q+ DA D+ Q+ F++ + Sbjct: 23 LVDRARDGDTEAFRALYQRYHRRVYALAYGVVQNKEDAMDVVQEGFIKAHRYLDRFEGNS 82 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYL-------------EMLALMPEGGAPSPEERES 106 ++L I + +D R++ + +L+P +P + Sbjct: 83 SFYTWLYRIVMNLSIDHIRKHKRVRHVDFNDAISHGQDDAASEDSLLPRVLGQNPGKSLV 142 Query: 107 QLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 + E + + + L L+ K R ++ +L+G++Y E+A + S ++ + A + Sbjct: 143 RKEIREQISAALAKLSDKHRAVLVMRELEGMSYEEMAQAMECSKGTIMSRLFHARRNMQQ 202 Query: 167 FRLEY 171 LEY Sbjct: 203 HLLEY 207 >UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514 RepID=B9XPW8_9BACT Length = 205 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 13/184 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + R S F L + + + + R L+ A +A+D+AQ+ F++V S + Sbjct: 11 LMLRVKRGDSDAFAELVEKYKQPVINVVFRILRDATEAEDLAQNVFIQVYKSAHRYEVSA 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEER------------ESQ 107 ++L TIA+ + ++ RR + A P + Q Sbjct: 71 KFSTWLFTIARNLCLNEIRRRSRHPADSLEANFTNSDNEDLPSRQFEDVKVYSAPDTLLQ 130 Query: 108 LETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 E ++ L L R A LL + + ++Y EIA +G S+S+ K + + E Sbjct: 131 HELEHEVEQALKELPENQRTAILLCRQEDMSYEEIAKVIGCSLSATKSLIHRGRETLKQK 190 Query: 168 RLEY 171 Y Sbjct: 191 LKPY 194 >UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IN25_9CLOT Length = 198 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +A FE L ++ + S R L + DA + AQ+TF++ + Sbjct: 9 LLQKARNGDVGAFEELTTEYYSKVYSICYRMLNNTEDAYEQAQETFIKAFKYIKDFKGNC 68 Query: 60 DPRSFLCTIAKRVMVDLFRRNA------LEKAYLEMLALMP--EGGAPSPEERESQLETL 111 ++L IA V +D R++ +E+ E L L P PE+ Sbjct: 69 AISTWLYRIATNVCLDFIRKHKNKKVISIEQNTFEDLQLKDSLVSENPGPEKVAETNAQK 128 Query: 112 QLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 Q + +D +N K R +L GL+Y EI+ + V + +VK + +A Sbjct: 129 QAIKEAMDKMNEKNRLVIILRDFMGLSYDEISDTMKVPVGTVKSRINRARNELRELL 185 >UniRef50_Q2RUF6 Sigma-24 (FecI) n=2 Tax=Proteobacteria RepID=Q2RUF6_RHORT Length = 173 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 6/171 (3%) Query: 7 TTASLTFESL---YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 A F SL T++ LK+++ R+ S A D+ QDT++R S ++ + R+ Sbjct: 1 MGAERPFGSLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRA-ASAEIAMPDNVRA 59 Query: 64 FLCTIAKRVMVDLFRRNALEKAYL--EMLALMPEGGAPSPEERESQLETLQLLDSMLDGL 121 +L +A + +D RR+ L E L P+ + + + L +L + L Sbjct: 60 YLYRMAANLAIDHLRRDGARARGLCEETLLEDIPSAEPAVDRVVAARQELAILSRAVAEL 119 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 K R FLL + GLT ++A +LG+S +V+K++A+A+ HC ++ G Sbjct: 120 PEKCRIVFLLYRGRGLTMKQVAARLGISEKAVEKHIARAMVHCRKRMIDAG 170 >UniRef50_C6IHS3 RNA polymerase ECF-type sigma factor n=2 Tax=Bacteroides RepID=C6IHS3_9BACE Length = 191 Score = 161 bits (409), Expect = 9e-39, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 5/172 (2%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIRDPR 62 F LY + + + + + DA++I QD F+++ S L + + Sbjct: 9 AIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIK 68 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEML--ALMPEGGAPSP--EERESQLETLQLLDSML 118 FL + + ++ + ++ E + + A EG S EE + +D ++ Sbjct: 69 GFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLI 128 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + L + R+ FLLS+ + L+Y EIA +LG+S +V+ ++ KA++ Sbjct: 129 NSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKR 180 >UniRef50_A7M626 RNA polymerase sigma factor n=5 Tax=Bacteroides RepID=A7M626_BACOV Length = 198 Score = 161 bits (409), Expect = 9e-39, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 2/170 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKL-QSAFDADDIAQDTFLRVMV-SETLSTIRDPR 62 + FE LY + G L +++ R + + A+++ Q TF+R+ E + Sbjct: 14 LKGGSFQAFERLYNMYSGKLYNFIMRLSSGNQYMAEEVVQATFIRIWEVHEKVDPASSFI 73 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 SFLCTIAK +++++++R +E Y E L EE + +DS+ + L Sbjct: 74 SFLCTIAKNLLMNMYQRQTVEYVYNEYLMKSSVDRDSQTEENIDLRFLNEYIDSLAEELP 133 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + ++ F+LS+ T EIA +G+S S+V ++ AV+ +++ Sbjct: 134 AQRKKIFILSKRQNYTNKEIAEIMGISESTVATQLSLAVKFMREQLMKHY 183 >UniRef50_A7ALM4 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ALM4_9PORP Length = 196 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRS 63 A F++L+ L + R ++ +D+ Q++FL++ + I R+ Sbjct: 17 AVNDDENAFKTLFFQFFSPLCIFAHRYIERWETCEDVVQESFLKIWENRKSIRIETSARN 76 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 FL T + +D R+ LE A+ + + +G PS + S +E +L LD L Sbjct: 77 FLVTSVRNNCIDYLRKQELELAWKQ--WKISKGDEPSGD-IYSIVELRTMLAEALDKLPE 133 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 TR F ++ +G Y+EIA + +S+ +V+ +++KA++ + +Y Sbjct: 134 NTRLIFEKNRFEGKKYTEIAEEQQISVKTVEAHISKALKILRVELKDY 181 >UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily n=9 Tax=Actinomycetales RepID=A8L2E7_FRASN Length = 305 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 1/162 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 ++E + H + R +A DA+D+ QD F+RV S T +L I Sbjct: 51 PPSWEDVVREHGNRVYRLAYRLTGNAHDAEDLTQDVFVRVFRSLADYTPGTFEGWLHRIT 110 Query: 70 KRVMVDLFRRN-ALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 + +D RR + L G SPE ++ +++ L L R A Sbjct: 111 TNLFLDRMRRQQKIRFDALPEDTERLAGREASPEAVYAESHLDADVEAALAALPPDFRAA 170 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +L ++ L+Y EIA LGV + +V+ +++ + Sbjct: 171 VVLCDIEQLSYEEIAQTLGVKLGTVRSRISRGRAMLRAALAD 212 >UniRef50_A6SZL5 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Proteobacteria RepID=A6SZL5_JANMA Length = 178 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 104/154 (67%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 E LY H WL + L R+L S DA+D+ +TF +V+ ++ + I++PR+FL TIAKRV+ Sbjct: 23 EKLYAEHQSWLLARLQRRLPSRADAEDVTSETFAQVVENKNPADIQEPRAFLTTIAKRVL 82 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 L+RR LEKAYL+ L LMPE SPEER +E ++ +D LD L + AFL S+ Sbjct: 83 FHLWRRQDLEKAYLQSLMLMPEASVLSPEERAVLIEAIEQIDRALDSLPLPVKTAFLYSR 142 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 LD LTY EIA +LGVS++++++Y+ +A+ CL + Sbjct: 143 LDRLTYPEIALRLGVSVATIERYMKRALLQCLQW 176 >UniRef50_C5PUA0 RNA polymerase ECF family sigma factor n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PUA0_9SPHI Length = 194 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 81/168 (48%), Gaps = 1/168 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + + F +LY + L + + L+ +D+ QDTFL++ + + Sbjct: 6 LLHKVKNGDIDAFNALYTLYAPLLYNKCLKLLKDYEILNDLVQDTFLKIWHLRTEIDPEK 65 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 R+F+ IA+ +++D+FRR + +K E L + + E +L+ + Sbjct: 66 GFRTFIFRIAENMVMDIFRRISRDKKLQEELWYNLVENSFHFNDHVIDKEKKMILEQAIS 125 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L+ + +E ++L +++ +Y E+A +LG+S+SSV + A++ + Sbjct: 126 QLSPRKKEIWILCKVNEKSYKEVAQQLGISVSSVSNQLVTAMKDIKDY 173 >UniRef50_Q2S652 Possible sigma-70 factor, ECF subfamily, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S652_SALRD Length = 194 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 6/167 (3%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPR 62 R + + +L+ + + ++ SA A D+AQDTF+R+ + +LS + Sbjct: 13 RLKASDREAYAALFDAMYEPVFRYVRSITSSAEAAQDVAQDTFIRLWEARESLSPSQSLE 72 Query: 63 SFLCTIAKRVMVDLFRRNALE----KAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 ++L IA+ + R A + A P A P+++ + L + Sbjct: 73 AYLYRIARNRAYNHERNRRTRDEKEPAVRDKTAAQPASPA-RPDDQADADQLEDRLWQWI 131 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L G+ REA +L++ +GL++ E A +G+S +V ++ +A++H Sbjct: 132 GELTGRQREALVLTRFEGLSHEEAADVMGISPRTVNNHIVRALKHLR 178 >UniRef50_A5UPH8 RNA polymerase, sigma-24 subunit, ECF subfamily n=7 Tax=Chloroflexi (class) RepID=A5UPH8_ROSS1 Length = 212 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 7/180 (3%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + S E+LY + + R L++ A+++ Q+ F RV I Sbjct: 27 LIAAIAQGDSSALETLYDRYSSVVYRMALRMLKNRELAEEVVQEVFWRVWRRSASFDIER 86 Query: 61 PR--SFLCTIAKRVMVDLFRRNALEKAYLEMLALMP-----EGGAPSPEERESQLETLQL 113 R +L IA + +D RR + P E E ++ Sbjct: 87 GRVAQWLFGIAHNLCIDELRRMRARPTQVYEDVDHPVIQQLADDQIDVPEAAWAFEQRRV 146 Query: 114 LDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 + LD L REA L+ GL++ EIA KL + ++K V ++ GL Sbjct: 147 IRDALDHLPDTQREAVELAYFGGLSHQEIATKLNRPLGTIKTRVRLGLQKLGALLTARGL 206 >UniRef50_D0S2J0 Putative uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2J0_ACICA Length = 173 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRSFLCTI 68 + F +Y + L SW KLQ ++D++Q+ F R + SE + I++P+++L I Sbjct: 13 QVWFSQIYRSQQTTLLSWFKHKLQHHHQSEDLSQEVFYRALKSEYSFKQIKEPQAWLMGI 72 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 AK V++D +RR +E YL+ L +PE PS E ETL + +L+ L +T + Sbjct: 73 AKHVIIDHWRRQHIENLYLDALQHLPEEYYPSAEHEVYIQETLYQVHLILEKLPTRTAQV 132 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 FL+SQLDG+TY EI+ K+ +S ++VK+ + +A C+ Sbjct: 133 FLMSQLDGMTYREISEKINISEATVKRDMKQAFLACIDL 171 >UniRef50_C6XBX6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBX6_METSD Length = 171 Score = 160 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPRS 63 ++ LY HHGWL WL R+L A D+AQDTF+RV+ + + +PR+ Sbjct: 1 MSSAPHHEVHKLYNIHHGWLVEWLRRRLGCVHHAHDLAQDTFVRVLDKPLVIQGVHEPRA 60 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 FL IA +MVD FRR A+E+AYLE L +P S EER +E L +D+M GLN Sbjct: 61 FLSRIAHGLMVDQFRRRAIEQAYLEALQHLPTRHMESAEERMMNIEALMRIDAMFAGLNP 120 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 R AFLLS+L G+TY +IA ++ VS+ SV+ Y+AKA+ H L Sbjct: 121 NIRTAFLLSRLHGMTYPDIAREMNVSLRSVEGYMAKAIGHLLA 163 >UniRef50_A6EGM3 Putative RNA polymerase ECF sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EGM3_9SPHI Length = 196 Score = 160 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 71/169 (42%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + + + F+ LY + + + ++L A A DIAQD F+++ V T S I + Sbjct: 15 LLRQLSEGSKAAFDVLYDKYWKQVYNAAYKRLNDADQAADIAQDVFVQLWVRGTKSPIDN 74 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 ++L ++ + + + A E + E LQ + +++ Sbjct: 75 LPAYLFVASRNSVFKHMEKAGKFMGVPQDAAHELEARHGGADAGMLHKEFLQAFNVLVNS 134 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L + + F + + ++ EIA KL +S +V+ + KA+ + Sbjct: 135 LPTQQQAIFRMRFEEEMSSQEIAEKLQISPKTVRNQMGKALATLKTSMM 183 >UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESI6_SORC5 Length = 266 Score = 160 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 10/182 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +RA F SL H + ++ DA ++ QD FLRV + Sbjct: 69 LIERAQKGDQAAFRSLVERHQRRAFAIAMGLVRDENDARELVQDAFLRVYKGLGSFQGGS 128 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGA---------PSPEERESQLET 110 ++L I + +DL R+ L+ E P + E Sbjct: 129 SFFTWLYRIVTNLAIDLMRKPGRRDLELQENQAADEQSDFPLVARIDGADPLNVVRRREI 188 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + + LD L R L+ +++G++Y E+A +GVS ++ + A + + Sbjct: 189 AGRIQAALDALPPYHRGVILMREVEGMSYEEMAQAMGVSKGTIMSRLFHARQKLQRALAD 248 Query: 171 YG 172 Sbjct: 249 CY 250 >UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67R63_SYMTH Length = 208 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 10/176 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +RA FE L H + + R + DA D+AQ+ F+R S Sbjct: 9 LVERAKRGDVEAFEQLISQHEKTVYNIAYRLTGNHEDASDLAQEAFIRAYSSLADFRGDS 68 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEK-AYLE--------MLALMPEGGAPSPEERESQLET 110 ++L I V +D RR +K YL+ ++ A PE+ ++E Sbjct: 69 SFATWLYRIVNNVCLDELRRRKRQKVTYLDQAVEMEDGEVSRQIADTADGPEQALERVEL 128 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 +L+ + L+ + R ++ +L G +Y+EIA L +++ +VK + +A Sbjct: 129 QRLIQESILQLDEEYRVVLVMRELQGYSYNEIAEALDLNLGTVKSRLNRARSALKE 184 >UniRef50_C9KS81 RNA polymerase sigma factor n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KS81_9BACE Length = 198 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 5/169 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + + + F LY + L ++ +S DA+DI Q+TFLR+ E LS Sbjct: 11 LIKKVKQGSYEDFTRLYFMYADLLYGFVLNLTKSPDDAEDILQETFLRIWQTKENLSLET 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGG---APSPEERESQLETLQLLDS 116 +S+L TIA +++D FR+ ++ E+ + E E L L+ Sbjct: 71 SFKSYLYTIAHNLIIDSFRK-KIDSVAFEVYIQSDAYQNYTENNTENEVYFDEFLDKLNE 129 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L+ + F LS+ G + +IA K+GVS +VK + A++ Sbjct: 130 AKKKLSSRQLVIFELSREKGCSIKDIAEKMGVSEKTVKNQLTLALKTLK 178 >UniRef50_C4ZMF7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thauera sp. MZ1T RepID=C4ZMF7_THASP Length = 198 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 1/171 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRD 60 RA F +L H + +L R L + +A ++ QD F++ + Sbjct: 22 LARARAGDVAAFGALVRRHQERVFRFLHRMLDAREEAMELTQDVFVKAWQALPDWRPEAA 81 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 ++L IA+ +D RR L + L AP PE R + + L+ L Sbjct: 82 FSTWLLQIARNAALDQLRRRQLVRFAPLEEGLEVADDAPGPEARYASRQRQAQLERALQR 141 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + RE LL +++GL Y E+A LG++ +VK +A+A L + Sbjct: 142 LAAEHREILLLREVEGLAYGELASVLGIAEGTVKSRLARARSALLEHFDPH 192 >UniRef50_C6Y3B4 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y3B4_PEDHD Length = 188 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 ++ F +Y + L L A D+ QD F + I Sbjct: 12 LAALLRGGDQYAFSEIYDRYMPLLLRHAVDMLHDEDQAQDVVQDIFQMLWEKAGELEIHT 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +FL + ++ R + + Y E++ E G S +E + E ++ L Sbjct: 72 SFSAFLYKATRFRVLKQIRHSKIASQYTELVKTEFEKGVASTDEAIDEKELAFKIEKGLA 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L K RE F LS++ L++ EIA +L +S +VK+ V+ A++ Sbjct: 132 KLPAKMREVFELSRMQDLSHKEIAKQLHLSDHTVKRQVSNALKIMRESL 180 >UniRef50_Q21KS5 Sigma-70, region 4 type 2 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21KS5_SACD2 Length = 168 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 16 LYGTHHGWLKSW-LTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMV 74 LY + L T+ ++ DA+DI QD F V+ ++ + TI +P+++L A + + Sbjct: 10 LYEKYRSDLGGLIATKFKKNQHDAEDIVQDAFYNVLRAKNIDTIDNPKAYLYQAASNLAL 69 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 + R+N + Y+ + +PE L++L++ +D L K + FL+S++ Sbjct: 70 NRIRKNNYHRDYIASMDDTAVD-MLTPERNVLAQHDLKMLETAMDKLPKKYQTTFLMSRM 128 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +Y EIA L ++ S+V+K++ K ++H E Sbjct: 129 HSKSYKEIAADLNIAESTVEKHIIKTLKHLRSHLDE 164 >UniRef50_A9DTH0 Putative RNA polymerase sigma factor n=2 Tax=Flavobacteriaceae RepID=A9DTH0_9FLAO Length = 171 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 1/158 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTI 68 +F + Y T+ ++ K A DI Q+ F++V + +++L T Sbjct: 10 DESSFNNFYATYLQAASNFAFYKSGDKASAMDIIQEAFVKVWENCAKIDPSKAKTYLFTT 69 Query: 69 AKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 +++ + + Y E A + P + E Q L + + L+ K RE Sbjct: 70 INNTFLNVVKHQKVVLNY-EKTASYMDRTNQDPAYIMEENEFKQKLQNAIADLDDKEREV 128 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 FLLS+++G Y EIA L +S +V+K ++ A++ Sbjct: 129 FLLSRVEGKKYREIAELLDISQKTVEKRMSLALKKLRA 166 >UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B9XS45_9BACT Length = 216 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 10/181 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +RA ++ L + + + + + DA+D+AQ++F++ + ++ Sbjct: 34 LVERARNGDMAAYDDLVRRYQERIYATVYHMTSNHEDANDLAQESFIKAFQALKSFKGGS 93 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPS---------PEERESQLET 110 +++ IA ++ ++ P P E Sbjct: 94 SFYTWIYRIAVNKTINFLKQRKNRAQMSLNDLDFNAEHDPDLVALISDKTPRRDIGLSEL 153 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + L++ L L+ R L + GL++ EIA + +I +V+ + A + + + Sbjct: 154 QEKLNAALLKLSEHHRLVVTLHDVQGLSHEEIAKIMDCNIGTVRSRLFYARQQLQAYLSD 213 Query: 171 Y 171 Y Sbjct: 214 Y 214 >UniRef50_D1CEA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEA8_THET1 Length = 196 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 8/180 (4%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP 61 +R + E+LY + + S + R +Q A+++ Q+TF R + Sbjct: 12 MERLSRGDLSAMEALYDCYSRAVYSMILRIVQDQQVAEELTQETFFRAWKQAKSFSNDRG 71 Query: 62 R--SFLCTIAKRVMVDLFRRNALEKAYL------EMLALMPEGGAPSPEERESQLETLQL 113 + S+L +IA + +D RR + L +P+ P+E + Sbjct: 72 KCASWLMSIAHNIAIDEIRRCKARPKSIRSEDSSNYLMNLPDSSLEDPDEIIMGGIRRNI 131 Query: 114 LDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 + L L R+ +S GLT SEIA K+G + ++K + A++H +E G+ Sbjct: 132 VLEALRELPENQRKVLEMSYFGGLTQSEIADKVGEPLGTIKTRMRLALQHLRRNLIEKGI 191 >UniRef50_C9KS29 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KS29_9BACE Length = 238 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 6/166 (3%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS--TIRDPRSFLCT 67 F+S + + +K++ + L+S DA+D+AQD F ++ L ++ Sbjct: 53 EKDFQSFFTVNFPKVKNFARKLLKSDEDAEDVAQDVFCKLWQQPELWQHPNDKLDGYIFV 112 Query: 68 IAKRVMVDLFRRNALEKAY----LEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 + +++++F+ +E+ Y +E L + E L +L L + Sbjct: 113 TTRNIILNMFKHQRIEQEYQVSFIENAILCEIIEDDQALKDIYYKELLMILRLALTKMPE 172 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 + R F S+ GL+ +IA KLGVSI +V+ + A+ L Sbjct: 173 RRRMIFEASRFQGLSNKDIAEKLGVSIRTVEHQIYLALIDLKKILL 218 >UniRef50_C2FYM2 RNA polymerase ECF family sigma factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2FYM2_9SPHI Length = 197 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 79/169 (46%), Gaps = 1/169 (0%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD-PR 62 + + ++ FE +Y + + L L+ AD+I Q F+++ Sbjct: 13 QFSGGSAQAFEHIYKRYSKIIYKRLLFLLKDPETADEILQSLFIKIWDMRETIDADKPFS 72 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 +++ +A + +D+FR+ +K + L + SP+E E L +L+ ++ + Sbjct: 73 AYILRMADHMAIDVFRKLTRDKKLQKELWDNFMEYSTSPDEDYIYKENLNILEQAIEQMP 132 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + + F L +++G +Y E++ +L +S S++ + A++ + +E+ Sbjct: 133 PQRKLIFRLCKIEGRSYKEVSEELNISYSTISNQLVIAMKFLKKYAIEH 181 >UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFY7_9BACT Length = 191 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 9/179 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + +A + F L H+ + R +S DA D+AQ +++V + Sbjct: 10 LVFQAKEGSQTAFNQLVTLHYDKVYGQALRMTRSEEDAKDVAQLAWIKVWKKLSSFRGDS 69 Query: 60 DPRSFLCTIAKRVMVDLFRRN------ALEKAYLEMLALMPEGGAPSPEER--ESQLETL 111 S++ I +DL R+ A E YLE A SP++ + E Sbjct: 70 AFTSWVYRITTFTALDLIRKRNSSRETATEAEYLENAANADASPIASPDQITNLERKELQ 129 Query: 112 QLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +D + L K R A L +++GL+Y EIA +L +V + A + + Sbjct: 130 SRIDDAMTKLPEKLRTALQLREIEGLSYEEIAQQLQCKTGTVMSRLFNARKSIQKHLAD 188 >UniRef50_C1DFE8 ECF sigma factor, FecI family n=5 Tax=Gammaproteobacteria RepID=C1DFE8_AZOVD Length = 175 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 A LY HH WL WL R++ + A D+AQDTF+R++ +L +R+PR + Sbjct: 8 AAEPPHRAVGLLYQNHHTWLVGWLRRRMDCSHSAADLAQDTFVRLIG-GSLPELREPRHY 66 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L T+AKRV++D FRR LE+ YL+ LA PE SPE R +ETL LD+ML GL K Sbjct: 67 LVTVAKRVLIDHFRRRTLERTYLDALARQPEAEEVSPEVRLQIVETLLALDAMLLGLGHK 126 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 R+AFL+SQL G+ Y+EIA +LGVS+SSV KY+A+A E CLLF L+ L Sbjct: 127 PRQAFLMSQLLGMNYAEIAERLGVSVSSVTKYIARATEQCLLFALDADL 175 >UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W0_SPHTD Length = 237 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 9/180 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + R E+L +HG L ++L R A+D+ Q+TF R++ R Sbjct: 16 LYRRLLAGDVAALEALVPRYHGPLLAFLYRLTGDRQQAEDLVQETFTRIVTYRGEPPTR- 74 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKA--------YLEMLALMPEGGAPSPEERESQLETLQ 112 R + T+A+ + +D R A +A + P + + + + Sbjct: 75 FRPWAFTVARNIALDHLRTAARRQAIAPRVTPSEDDDPFTTVPDPDPGALDLVLRDDDRR 134 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 + + L L RE +L L+ +EIA GV++ +VK + + ++ Sbjct: 135 TVAAALQQLPPHQRETVVLRFYHDLSLNEIAEVTGVAVGTVKSRLFHGLRRLKTLLIDEY 194 >UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIR4_9FIRM Length = 209 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + R ++ L + + + R + DA D+AQ+ FL+ + + Sbjct: 8 LVARCQRGDLSAYDELMKCYEQKVYALCFRMSGNHTDAQDLAQEAFLKAFRALPSFKGQS 67 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLE----------MLALMPEGGAPSPEERESQLE 109 ++L I +D RR A + +A+ P P E Sbjct: 68 QFSTWLYRIVTNTCLDERRRQARRPGLVSMDKPLDTDDGQIAVTLPDKGPDPLSEALNSE 127 Query: 110 TLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKK 155 + +L L R ++ L+G +Y EIA L V+I +VK Sbjct: 128 LQAEIQELLSRLPAGQRIVVVMRDLEGYSYDEIAAVLDVNIGTVKS 173 >UniRef50_B9P6N4 Predicted protein n=8 Tax=cellular organisms RepID=B9P6N4_POPTR Length = 188 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 2/156 (1%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE--TLSTIRDPRSFLCTIAKR 71 +LY HHGWL+ WL R+L +A DA D+AQDTF+R++ + L +R+PR++L T+A+R Sbjct: 31 SALYVGHHGWLQGWLRRRLGNACDAADLAQDTFIRLLTAPAGDLPALREPRAYLATVARR 90 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++++ RR +LE+A+L+ LA +P APSPE++ L+ LQ +D+MLDGL K R F+L Sbjct: 91 LLINHLRRQSLEQAWLQALAALPAPQAPSPEQQLLILQALQEVDAMLDGLPPKVRAVFIL 150 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 SQ++GLTY+ IA +LG+ + SVK+Y+A+A+ C+L Sbjct: 151 SQVEGLTYAAIAEQLGMGLRSVKRYMAQAMAECILL 186 >UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F885_ACIC5 Length = 236 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 13/182 (7%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-- 59 R S + L THH + + R S+ DA+D+ QD FL+V + Sbjct: 49 VQRCMDGDSGAWTELVQTHHRRVYALCYRFTGSSSDAEDLTQDVFLKVYGNLRSFDTERG 108 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGA-----------PSPEERESQL 108 ++++ T+ + ++VD FRR+ ++A M E P P +R Q Sbjct: 109 SFQTWITTLTRNLLVDHFRRSKQQRATSSMDEGWDEADDLPLTQRLAQPGPDPHDRAVQR 168 Query: 109 ETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 + +L+ L ++ + REA +L L L Y EIA L V +VK +++ Sbjct: 169 QLEKLVQEALVKISPELREAVILRDLQDLDYKEIAQILRVPEGTVKSRISRGRAELARVL 228 Query: 169 LE 170 Sbjct: 229 ER 230 >UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AX4_SOLUE Length = 236 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 8/181 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV--SETLSTI 58 + R +E L H + R SA +A D+ Q+ FLRV ST Sbjct: 54 LVSRCLGGDEAAWEELVRQHTRQVYGLCFRFTNSAQEAQDLTQEVFLRVFKTIKTFRSTE 113 Query: 59 RDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPE------GGAPSPEERESQLETLQ 112 ++L + + +++D +RR ++ + +P GA P++ + E + Sbjct: 114 GSFGTWLARVTRNLLIDHYRRTRQQRVTDSIEDQLPVLEQVGTSGAARPDQALAGREASE 173 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 +L + L L+ REA +L L + Y EIA L + +VK + + + Sbjct: 174 ILQATLQKLSPDLREAVILRDLQEMEYREIADVLDIPEGTVKSRINRGRAELARLLRKQK 233 Query: 173 L 173 L Sbjct: 234 L 234 >UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD34_THET1 Length = 189 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 7/179 (3%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + RA F L + + + R + F A+D+ Q+ F+ + Sbjct: 9 LVRRAQEGDLDAFNKLVERYQVQMYNLAIRYIGDPFLAEDVTQEAFVAAWKALGSFRGGS 68 Query: 61 PRSFLCTIAKRVMVDLFRRNALE-----KAYLEMLALMPEGGAP--SPEERESQLETLQL 113 RS+L I DL RR+ LE L P+ G P PEE T + Sbjct: 69 FRSWLFRILINEAHDLRRRHVKRTPGSLDQILEELGEFPQMGDPHIGPEETAVSAATFKA 128 Query: 114 LDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 ++ + L + + LL + GL+Y E+A L + + +VK + + + G Sbjct: 129 IEKCIQKLPEEYKLVLLLVDVQGLSYDEVATALRLPLGTVKSRLFRGRCMLRELLKDSG 187 >UniRef50_C6XSL3 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XSL3_PEDHD Length = 192 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 1/169 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + F +Y + L + + +++ + DI + FL + + Sbjct: 12 LIAQLKRGNRDAFTEIYDRYFWQLHAHAYKWMRNREETRDIIHELFLTLWEKRETLSFEH 71 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 S+L + + +L +E YL L G + + + L+++ + Sbjct: 72 GLLSYLSAAVRNRIFNLLAHKRIESKYLSSLDDFINEGICITDHLIREKQLTSLIENEIS 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 G+ K RE F LS+ + L++ EIA +L +S +V+K+V A++ Sbjct: 132 GMPAKMREVFELSRKENLSHKEIAEQLDISELTVRKHVQHALKILRFKL 180 >UniRef50_B0KJM4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KJM4_PSEPG Length = 170 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73 E+LY H GWL + L R+L +A DA D+ QDTF R++ S+T+ +PR++L +A ++ Sbjct: 16 EALYNGHQGWLHARLRRRLGNAVDAADLVQDTFARILASKTVV-FDEPRAYLSCVAGGIL 74 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 + +R +LE+AYL+ L +PE PSPE R LETL +D+MLD L R AFLLSQ Sbjct: 75 ANWCQRKSLERAYLKALEHLPEPEVPSPEARLLILETLHEIDAMLDTLPPLVRRAFLLSQ 134 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L G+ Y+ IA +LGVS+ ++K+Y+ +A CL Sbjct: 135 LGGMKYAAIAEQLGVSLITIKRYMKQAFLQCLRL 168 >UniRef50_A7LZK7 Putative uncharacterized protein n=5 Tax=Bacteroidales RepID=A7LZK7_BACOV Length = 206 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 8/178 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + FE L+ +++ L+ + R ++ DI Q+ FLR + ++ Sbjct: 10 LLGELKRGNNAAFEFLFKSYYPRLRGYAIRFIEDEETVRDIIQECFLRFWERREMLSVFS 69 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAY--------LEMLALMPEGGAPSPEERESQLETLQ 112 S L ++ + ++ + ++ + Y L E + E + Sbjct: 70 LTSLLFSMVRNGCLNYLKHRSIVEKYRVEYLAKVDGEERLYYADFMQDAEHKLLYKELQE 129 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + +L+ L ++RE FLLS+ GL EIA KL +S ++V+K++A+A+++ E Sbjct: 130 QIALVLNQLPDRSREIFLLSRFRGLKNREIAEKLQISTTAVEKHIARALQYFSRHFSE 187 >UniRef50_D0THQ1 RNA polymerase ECF-type sigma factor n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0THQ1_9BACE Length = 194 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 3/173 (1%) Query: 1 MSDRATTTA-SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR 59 + ++ TT L F L+ ++ L + R + +DI QD F + + + +++ Sbjct: 14 LLEQITTEDNRLAFHRLFELYYPALCMYAKRFITDKETREDIVQDVFFAIWENRSRISVK 73 Query: 60 -DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSML 118 RS+L T A+ ++ +RN E+ Y ++ A S EE + E LL L Sbjct: 74 TSARSYLVTCARNHCLNYLQRN-HERYYESLIQEQIPIYAESSEELYTWEELQTLLRQAL 132 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 D L R AF ++ + +Y EIA ++ +SI +V++Y KA E +Y Sbjct: 133 DKLPENYRLAFEKNRFENKSYGEIAEEMQISIRTVERYKNKATELLKTELKDY 185 >UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WV3_NITEU Length = 197 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 +LY H L+++L R A ++ Q+TF+R+M +T ++I++ R+ L IA + Sbjct: 37 LANLYLRHFSELRAFLFRHTGCREIAAELTQETFIRIMGYQTDTSIQNARALLYRIAGNL 96 Query: 73 MVDLFRR--NALEKAYLEMLA--LMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREA 128 +D R E ++ L +P P + + L+ L +D L + A Sbjct: 97 AIDHHRTCVKFPESVSIDDLPQHELPATELTDPARLVAARQLLEKLCIAIDALPPQCHRA 156 Query: 129 FLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 F+L + DG +++EIA KLG++ ++V+K + +A+ Sbjct: 157 FVLHKFDGYSHAEIAEKLGITRNAVEKLLIRALIRLRQVL 196 >UniRef50_B0KPG3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Pseudomonadaceae RepID=B0KPG3_PSEPG Length = 168 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 110/165 (66%), Gaps = 4/165 (2%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST----IRDPRSFLC 66 +Y H+GWLK WL R+L + A D+AQDTFLR++ ++ + ++ PR++L Sbjct: 4 DDLSQVYVEHNGWLKQWLYRRLGCSAQAADLAQDTFLRILQAQQKAGAKLSLQRPRAYLA 63 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 T+++R++ D FRR +LE+AYLEML +PE A S EE+ S ETLQ LD++LD R Sbjct: 64 TVSRRLVYDHFRRQSLERAYLEMLEQLPELFALSAEEQWSMRETLQQLDALLDTFKPVVR 123 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 FLL QL+GLTY E+A +LG+ +VK+++A A++ C+LF ++ Sbjct: 124 SVFLLVQLEGLTYIEVARRLGIGERTVKRHMANALQACILFEEDF 168 >UniRef50_C7PMZ3 RNA polymerase sigma factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PMZ3_CHIPD Length = 196 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 2/173 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 + R F L L++ R S ADD+ QDTFL+V + LS + Sbjct: 12 LCRRIAAGDEAAFSQLVELFAPRLQAMAARITGSVAVADDLVQDTFLKVWLSRDQLSDVA 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 P +++ I V+ RR ++ ++ + L E + E + L ++++ + Sbjct: 72 QPAAWIKKICFYRAVNHVRRQSIHDHVIDAVGLQKENTVKTAE-IVEFRQLLTMVNTAVQ 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L K R+ + LS+ L+ SEIA + +++S+VK + A++ + G Sbjct: 131 QLPEKQRQVYRLSREQALSISEIAEHMDLAVSTVKNLMVMALKSIRTSLQKSG 183 >UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobacteria RepID=P73431_SYNY3 Length = 223 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 11/182 (6%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + + T S F L + + L D D+AQ+ ++RV + L+ Sbjct: 39 LCQQKTRPDSTAFNELLRRYQSHVDKILYHLAPDWQDRADLAQEVWIRVYRNIHRLNEPV 98 Query: 60 DPRSFLCTIAKRVMVDLFRRNAL----------EKAYLEMLALMPEGGAPSPEERESQLE 109 + +L IA + D R+ + + E PSP+E S E Sbjct: 99 KFKGWLSRIATNLFYDELRKRKRVSHPISLDAPRRMDDGEIDWDIESDYPSPDETLSTAE 158 Query: 110 TLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 + L S + L R +L ++DGL Y EIA GVS+ +VK +A+A F Sbjct: 159 FYECLRSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIARARAKLQTFLQ 218 Query: 170 EY 171 Y Sbjct: 219 PY 220 >UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6 Tax=Chloroflexi (class) RepID=A9WDI9_CHLAA Length = 193 Score = 158 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 1/170 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + RA ++ + G L + R L AF+A+D Q+ FLR + ++ R Sbjct: 11 LVARACAGDQSACATIVQRYTGVLYNQAYRMLGDAFEAEDAVQEVFLRAFRNLQSYDPSR 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++L TI +D RR LE +A P PE Q +++ L Sbjct: 71 RLVTWLLTIGSNYCIDRLRRRRFNWLTLEDVAFWLPSTQPGPERSALQRAQQEVVQRALQ 130 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L R +L L+Y EI LG++ ++VK + +A + Sbjct: 131 RLPVTYRGVTVLRYWYDLSYEEIGQVLGLTEATVKTRLHRARKMLQEALA 180 >UniRef50_C6VZK9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VZK9_DYAFD Length = 193 Score = 158 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 78/171 (45%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + FE +Y + + K+ ++ +A +I Q+ FL + + I D Sbjct: 11 LLQLLRLGDRAAFEEIYNRYRIRMYRAALSKVGTSENAMEIVQEIFLDLWLRRDQVVIED 70 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 +L + K ++D +++ K Y E + + G + +E + E + + + ++ Sbjct: 71 LERYLFSATKYKVLDFYKKEFTRKQYAESVQVTGPGKSYDTDETIAYNELSRSIVACIEQ 130 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L KTR F L+++ G + EI+ LG+ + +V+ ++ ++++ +Y Sbjct: 131 LPEKTRVIFDLNRIQGKSADEISGVLGIPLRTVEYHITQSLKALRFSLRDY 181 >UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QRQ4_CHLT3 Length = 188 Score = 158 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 6/176 (3%) Query: 1 MSDRATTTA----SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETL 55 + F L + + R L+S DADD+AQ+ F+++ + + Sbjct: 7 LIAEFKQGNAIRREKAFTELIRRYQEKIYWVCRRMLKSHDDADDVAQNVFVKIYHALDKF 66 Query: 56 STIRDPRSFLCTIAKRVMVDLFRRNALEKAY-LEMLALMPEGGAPSPEERESQLETLQLL 114 + ++ IA ++ R + +A L+ L P G P+E + E +L+ Sbjct: 67 NEASQFFTWAYRIAANESINYMRSQKVRQAVGLDTLMSEPAGKESHPDEHLEKTEQSKLI 126 Query: 115 DSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 + + L K R+ F++ + L+Y EIA LG S+ +K A + + Sbjct: 127 EEAIARLPEKQRKVFVMRYYEELSYEEIAESLGTSVGGLKANYFHAFKKIEEILKK 182 >UniRef50_Q4KBG5 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonadaceae RepID=Q4KBG5_PSEF5 Length = 177 Score = 158 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 70/163 (42%), Positives = 98/163 (60%), Gaps = 1/163 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCT 67 + + SLY HH WL L R+L A+DA D+A D F+RV+ L RS+L T Sbjct: 8 SPDSVHSLYDAHHRWLYELLRRRLNHAWDAADLAHDIFVRVLKRPPVLRDEVHQRSYLAT 67 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 +A+ + +D +RR LE+A+L+ LA P+ PS E++ +ETL +D+ML L K R Sbjct: 68 VARGLCIDHWRRRQLEQAWLQALAARPQAVQPSAEQQAIIVETLYEVDAMLSRLPAKVRS 127 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 AF+L+QL G Y IA +LGVS VKKY+A+A+ HC L E Sbjct: 128 AFILAQLHGRPYQAIADELGVSERMVKKYLAQALLHCALLEAE 170 >UniRef50_A8ICQ0 RNA polymerase sigma-70 factor n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8ICQ0_AZOC5 Length = 216 Score = 158 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 11 LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM----VSETLSTIRDPRSFLC 66 ++++ +H L + RKL A D+ QD F+R + + + PR FL Sbjct: 46 SDLDAIFRLYHRELNRFAYRKLGDREAAADVVQDAFVRYLSADAQRADTARLDSPRFFLW 105 Query: 67 TIAKRVMVDLFRRNALEKAYL--EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 I +M+D RR + + + + AP P+ E +L+ L+ L+ Sbjct: 106 RIVGNLMIDTIRRKRRQGIHATWDEITEDVVDPAPLPDRLLETREEFRLVKEALETLSPN 165 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 R+A LL++++GLT+++IA +LGVS S V KY+ A+ C+ Sbjct: 166 CRQALLLNRVEGLTHAQIAGRLGVSPSMVSKYIMSALRRCMNALA 210 >UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alkaliphilus RepID=A6TSU8_ALKMQ Length = 201 Score = 158 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 10/180 (5%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +++ S +FE L H + R L + DA+D+ Q+ L+ + Sbjct: 11 LIEKSKDGDSESFEKLILQHQKKAFNIAYRMLGNLEDANDVTQEALLKAYRAINRFQEKS 70 Query: 60 DPRSFLCTIAKRVMVDLFRR-NALEKAYLEMLALMPE--------GGAPSPEERESQLET 110 ++L TI VD R+ + YL+ E PEE + E Sbjct: 71 SFSTWLYTIVTNTCVDFIRKNRKTKVVYLDREYEGEEGQYKREVYDDENGPEELLEKKEV 130 Query: 111 LQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 +L+ ++ LN + R+ +L ++G +Y EIA L + ++K + +A + E Sbjct: 131 QRLIHDAINLLNYEQRKVIILRDIEGFSYREIAEILDCAEGTIKSRINRARSNLKNLITE 190 >UniRef50_D0TR41 RNA polymerase sigma-W factor n=4 Tax=Bacteroides RepID=D0TR41_9BACE Length = 190 Score = 158 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 1/168 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRD 60 FE+LY ++ + S++ + A A DI QD FL++ + + Sbjct: 9 LQLLKEGNKNAFEALYRAYNARIYSFVLSMIGDAGVAKDITQDIFLQIWEKRLNIDLEGN 68 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 +L I++ ++ RR L + Y++ L+ + +E L + + +L+ Sbjct: 69 FDGYLFKISQNMVYHYVRRELLLQNYVDKLSNESADESVEIDEELDYLFLEEYILKLLEE 128 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 L RE F+L GL Y EIA +L +S +V V ++++ Sbjct: 129 LPPARREVFMLYWKSGLNYREIAEQLDISEKTVATQVHRSLDFLRDKL 176 >UniRef50_A6EI30 RNA polymerase ECF-type sigma factor n=2 Tax=Pedobacter sp. BAL39 RepID=A6EI30_9SPHI Length = 202 Score = 158 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 1/166 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLS-TIRDPRS 63 FE++Y + L ++ + ++S ++I QD F+++ ++ L ++ P S Sbjct: 18 LAKGDERCFEAVYHHYSARLFPYVDKMVRSKALTEEIIQDIFVQLWINRHLLLDVKFPTS 77 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L IA + ++ A ++ +A+ + EE+ E+ ++++ + L Sbjct: 78 YLFNIAANKTLSYLKKIANTHKLVDKMAMGQATYSNDTEEQLMVKESKRVIEMAVAQLPE 137 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 + R + LS+ GL++ +IA LG+S S+V + A++ Sbjct: 138 QRRLIWELSRNQGLSHKQIAAHLGISTSTVNNQLGHAMQFLRKSLE 183 >UniRef50_B1JF11 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida W619 RepID=B1JF11_PSEPW Length = 171 Score = 158 bits (401), Expect = 7e-38, Method: Composition-based stats. Identities = 70/153 (45%), Positives = 105/153 (68%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY +HH WL+ WL ++ A D+AQDTF+R++ + +S I++PR++L +IA+ +M+D Sbjct: 15 LYQSHHAWLRGWLRSRVGCQEHAADLAQDTFVRLLRARQVSPIKEPRAYLSSIARGLMID 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 FRR ALE+AY E LA +P G PS E R L+ L+ LD L L + R+AFLL+QLD Sbjct: 75 QFRRRALERAYQESLAHVPAGEVPSEEHRLVILDALERLDRALHQLRPRARQAFLLAQLD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 GL+ ++IA +LGVS ++V++ +AKA+ C R Sbjct: 135 GLSIAQIALRLGVSRATVERDLAKALGVCYRLR 167 >UniRef50_A5FEU4 ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FEU4_FLAJ1 Length = 185 Score = 158 bits (401), Expect = 7e-38, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 79/175 (45%), Gaps = 4/175 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + + F+ LY + L ++ +++S +++I Q+ F + T I+ Sbjct: 10 LVELLKKGKDKAFDELYFRYRDLLVRFVYARMKSVPISEEIVQEVFTTIWERRTTILIQK 69 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLAL---MPEGGAPSPEERESQLETLQLLDS 116 +++ T + +D + +++ Y++ + + + + E+ E +D Sbjct: 70 SFMAYIYTSVRYKTLDYIKSHSVTDQYIQEVLDRNTVTQTYTNTTEDSIYYEELQDAVDK 129 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 D L K +E F+LS++ + EIA +L VSI +VK ++ A++ + E+ Sbjct: 130 AADLLPKKAKEVFILSRIKHYSNKEIAEELNVSIETVKYHITYALKFMRTYLGEF 184 >UniRef50_A9C155 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Proteobacteria RepID=A9C155_DELAS Length = 159 Score = 158 bits (401), Expect = 8e-38, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 104/157 (66%), Gaps = 3/157 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM---VSETLSTIRDPRSFLCTIAKRVM 73 Y H+ WL +WL R+L + DA D+AQDTF R+ ++ + I++PR++L T+A+R++ Sbjct: 2 YAQHNHWLVAWLQRRLDNRCDAADLAQDTFTRIWASARTQAIEDIQEPRAYLTTVARRLL 61 Query: 74 VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 V+ R +LE+AYL L L+P PS E R LETLQ LD++LD L K R AFL+SQ Sbjct: 62 VNHLERRSLEQAYLASLHLLPPATVPSVEARAMLLETLQELDALLDALPAKVRMAFLMSQ 121 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L+G++Y +IA + +S+ +V +Y+A+ CLL LE Sbjct: 122 LEGMSYEDIAAHMQLSVRTVTRYMAQGFRQCLLAMLE 158 >UniRef50_C6XYS8 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XYS8_PEDHD Length = 200 Score = 158 bits (401), Expect = 8e-38, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + FE +Y + L + L+S A D QD F+++ +++ + Sbjct: 12 LLLALKKGEVAAFEEIYKRYKQRLAVNFLKLLRSEELAQDALQDLFIKIWTLRKSIDPDK 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +++L IA+ ++ D +R+ A +K + L E EE + + + L+ ++ Sbjct: 72 SFQAYLFKIAQNIVFDFYRKAARDKKMQLQMLLENEDFYSHIEENLASKDNISLVHELIA 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L + ++ F + +L+ +Y EI+ LG+S S++ K+V +A + Sbjct: 132 QLPPQQQKVFTMFKLEEKSYKEISILLGISPSTINKHVHQANKVIKAELQ 181 >UniRef50_A5W6M8 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Pseudomonadaceae RepID=A5W6M8_PSEP1 Length = 166 Score = 158 bits (400), Expect = 9e-38, Method: Composition-based stats. Identities = 77/165 (46%), Positives = 101/165 (61%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSF 64 T LY ++ WLK WL +L +A DA D+A DTFLRVM + IR+PRS+ Sbjct: 1 MATLDPQALHQLYSENNSWLKGWLRARLGNAADASDLAHDTFLRVMTARNPLPIREPRSY 60 Query: 65 LCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGK 124 L IA+ +++D RR +EKAYL+ LAL PE SPE R S +E L +DS+LD L K Sbjct: 61 LSAIARALLIDKARRRIIEKAYLQALALRPEPVEVSPEVRLSIIEMLVAVDSLLDELGAK 120 Query: 125 TREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 TR FL QL+GLTY A + GVSI++VK ++ KA+ CLL Sbjct: 121 TRAIFLAVQLEGLTYGAAAERFGVSITTVKNHLIKAMTRCLLAVE 165 >UniRef50_A6LBK1 RNA polymerase ECF-type sigma factor n=25 Tax=Bacteroidales RepID=A6LBK1_PARD8 Length = 179 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 3/171 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPR 62 + FES++ ++ L + T A++I QD F I R + Sbjct: 8 KIKEGDIKAFESIFRLYYTPLCLYATSITGEQEVAEEIVQDLFYVFWKERESLPILRSIK 67 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEML--ALMPEGGAPSPEERESQLETLQLLDSMLDG 120 ++L + + + Y + PE + +P+++ E L++ L Sbjct: 68 NYLYGATRNRSLQYLEHREVRYRYRNTVLAGENPESESYTPQDQLEYKELQSLVNRALGK 127 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L + F + + +G+ Y+EIA L +SI +V+ + KA++ Y Sbjct: 128 LPERRLRIFRMHRFEGMKYAEIASSLSLSIKTVEAEMTKALQTLRKEIENY 178 >UniRef50_D0MG02 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MG02_RHOM4 Length = 201 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 4/174 (2%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRD 60 R + L+ ++G L + L A ++ Q+ FLR+ Sbjct: 25 IRRIRQGDGEAYAELFRCYYGRLCRFAQSMLGDEEAAHEVVQEVFLRIWERRQRWQPTHS 84 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEG---GAPSPEERESQLETLQLLDSM 117 R +L + + RR L + + +P G P +R E Q L+ Sbjct: 85 LRLYLYQAVRNEAFNFRRRQQLRRRWQVDGLQLPVHRTCGEPDGLQRLQAEEFRQALEEA 144 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + L + R FLL + G TY+EIA +GVS +V + +AV++ + Sbjct: 145 IASLPERRRLTFLLHREHGFTYAEIARIMGVSPKTVSNQLTEAVKYLRARLASF 198 >UniRef50_C7PQG7 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Sphingobacteriales RepID=C7PQG7_CHIPD Length = 193 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 1/167 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-R 59 ++D + FE +Y L + +K + +A D Q+ F + + Sbjct: 12 LADLLRSGDRSAFEEIYHRFKFILHNHAWQKTRDEEEAKDAIQEVFTSLWAKRDTINVGS 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L + +++ ++ YL + E + R + L++ + Sbjct: 72 NLAGYLYASVRNHILNNIAHKEVQDKYLTSIRRFTEEQTVITDHRVRENLFTALIEKEIA 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L + RE F LS+ L++ EIA +G + +VKK + A++ Sbjct: 132 ALPPRMREVFELSRKHHLSHKEIAQIMGTTEQTVKKQMTVALKALRR 178 >UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8D0 Length = 187 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 3/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + RA FESL H L + R L DA+D+ QDT ++ S LS Sbjct: 13 LVVRAREGDIDAFESLVDRHETKLLRFCLRTLGDRQDAEDVVQDTLVQAWKSLNALSEPA 72 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALM--PEGGAPSPEERESQLETLQLLDSM 117 +++ +A D+ RR + + M G S E+ LQ S+ Sbjct: 73 AFGTWIYRLASNKCTDMLRRRMARPSDAQDPDDMSIHPDGRASVEKSVEARTALQHFSSV 132 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L L+ + R A++L Q++GL+Y+E+A LG+S SV+ + +A + Sbjct: 133 LQTLSSEQRVAWVLHQMEGLSYAEVAATLGISEGSVRGRIHRARTAVMEGME 184 >UniRef50_C7PFD0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PFD0_CHIPD Length = 193 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 1/173 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + + F LY H + +++ SA DA+DI Q+TFL + S L I Sbjct: 9 LLQKMRQGDESAFRQLYDRHSRQVAAFIFHLTHSAVDAEDILQETFLTLWTSREQLPAIV 68 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +P S++ IA+ +D R+ A ++ ++ + A + + E+ QL+++ L Sbjct: 69 NPASYIFIIARNKTLDHLRKIARQQKLVDHVWANISATADALDLELDARESQQLINTALS 128 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L+ + R F LS+ DGL ++ IA KL +S S VK + + F ++ Sbjct: 129 RLSEQQRTIFRLSRQDGLDHATIADKLHLSKSRVKNVQVETLRFIRQFLSQHA 181 >UniRef50_C6XW61 RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XW61_PEDHD Length = 195 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 1/164 (0%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCT 67 FE L+ H L ++ L+ A++I Q FL+ L I+ +++L Sbjct: 16 DDQAFEQLFKAHFKALHAYALALLKDEDTAEEIVQTMFLKFWEKRELLNIQTSVKAYLYK 75 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 ++ + ++ Y + + + E + L+ L + R Sbjct: 76 CVYHDSLNFLKHEKIKTKYQDFASYTMNSHHEPASSKAEMTELEYQIGKALNELPEQCRT 135 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 F +S+ + L Y EIA +LG+S+ +++ + KA+ L ++ Sbjct: 136 IFQMSRFEELKYREIAEQLGLSVKTIENQMGKALRIMRLKLADF 179 >UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY18_9BACT Length = 187 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 3/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + + ++ FE L+ + + ++ + DADD+ Q+TF++V ++ + Sbjct: 14 LVELVLQGDNIAFEYLFERYKEAIHRLFIQRTNNPLDADDLLQETFIKVYINIHRYNPAY 73 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++ TIA+ VD RR E ++ P P+PEE + + ++ L Sbjct: 74 TFGQWVYTIARNTFVDFIRRRQ-EDLPIDDKFTAPPSNNPTPEENIIRKQQRTQIERYLQ 132 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEH-CLLFRLE 170 + + R+ ++ + +Y EIA KL + + +VK + +A E C L + Sbjct: 133 AMPPRYRQLIVMRFFEEYSYEEIAMKLELPLGTVKTQIHRAREQMCRLIAAD 184 >UniRef50_A6EEH0 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEH0_9SPHI Length = 196 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 68/170 (40%), Gaps = 1/170 (0%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRD 60 R F +L+ + ++ S+ + S A D+ Q+ F+++ S +L + Sbjct: 13 LSRIAQGDQYAFTNLFNHYQRFVYSYGRKLTHSEEMALDLVQEVFIKIWHSRASLLEVEH 72 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 ++L + + + R + L L S + ETL+++ +D Sbjct: 73 FIAYLNRLVRNHAFNQLRALSKRSRITGDLELAGLEIEDSTLQLLDYKETLRVVSQAVDL 132 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L+ + + A+ L G+ Y E A ++G+S +V ++ A+ Sbjct: 133 LSPQQKMAYQLCHQQGMKYDEAAAQMGISPGTVHVHMKHALSKIREHLRR 182 >UniRef50_C7PDJ2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDJ2_CHIPD Length = 203 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 73/173 (42%), Gaps = 6/173 (3%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + + F +++ + + ++S A++I QD FL++ E L + Sbjct: 22 LLAAIAKGDTRAFAAIFKKYRMPVFMHTLSIIKSPERAEEITQDVFLKIWHYREGLDQLN 81 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++L + + + R+ ++ + + + +PE + E L +++ Sbjct: 82 SFENYLFIVTRNYTISELRKK-----FIPTDPEVDQAYSWTPERQLQFKELSSRLHEIIN 136 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L + ++ F++S+L+ T+ +IA +L +S +V + + A+ + Sbjct: 137 RLPPRRKQVFVMSRLENKTHQQIADELKISSGTVNQQLMAALSFIRAELAGFP 189 >UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8Z5_9BACT Length = 238 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 14/182 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + DR + F+ + + + + + + L++ DA+++ QD F+R Sbjct: 52 LVDRFKDGDASAFDEMVSRYWDRIYAVVHQLLRNHQDAEEVTQDAFIRAHRGLVNFRGDS 111 Query: 60 DPRSFLCTIAKRVMVDL----FRRNALEKAYLEM---------LALMPEGGAPSPEERES 106 ++L IA + + +RR + + L+ + SP++ Sbjct: 112 AFSTWLYQIATNLARNRYWYWWRRKRDKTVSFDQPVSSDNETPLSEIYAAPVESPDDITV 171 Query: 107 QLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 E + + S ++ LN K RE +L + L+Y EI LG+S+ +VK +A+A ++ Sbjct: 172 TQEFVDRVASGMEKLNAKHREILILRNVKNLSYEEIGTILGISVGTVKSRIARARDNLRA 231 Query: 167 FR 168 Sbjct: 232 TM 233 >UniRef50_C6VTF7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTF7_DYAFD Length = 180 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 1/169 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRS 63 S F +LY + L R++ + +++ Q+ F + I + Sbjct: 1 MKAGDSDAFATLYRKYWRRLFDAAYRRIMLREECEELIQEIFTDLWTKRETLLISVTLEA 60 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L + + ++ R + +AYLE L MP E+R E L++ + L Sbjct: 61 YLFGALRYSIYNMIRSRKIWEAYLEHLLQMPGDAGNDTEDRLHYEELALALENSIQNLPE 120 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 K R+ + LS+ + LTY EIA + + + +V+K + +A++ E+ Sbjct: 121 KLRKVYQLSRKEHLTYKEIAEREQIPVDTVEKQMGRALKILRDNLKEFA 169 >UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB78_GEMAT Length = 200 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 13/181 (7%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRD 60 A L F L + + S + R ++ A+D+AQD+F++V+ + S Sbjct: 16 VRLAQQGRELAFRELVRRYERPVFSLVYRMVRDRETAEDLAQDSFIKVLNHIDRYSPEFK 75 Query: 61 PRSFLCTIAKRVMVDLFRRNALEK------------AYLEMLALMPEGGAPSPEERESQL 108 S+L IA V +D RR +E + +E +L + S + Sbjct: 76 FSSWLFKIANNVAIDHLRRRRVETISMDGSPHAATASEVEATSLELQSEQESALDEIEAK 135 Query: 109 ETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 E ++ + L + R +L ++G +Y EIA L + + +VK Y+ +A Sbjct: 136 ELGSAIERAIASLRPEYRACIMLRHVEGRSYEEIATTLDLPLGTVKTYIHRARHELRRAL 195 Query: 169 L 169 Sbjct: 196 E 196 >UniRef50_A6EK66 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EK66_9SPHI Length = 198 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 1/164 (0%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRS 63 F+++Y + + S + + + AD++ QD FL+V + ++ Sbjct: 16 LKEGDRTAFDTIYHFYSNPIYSRILAMTKVSAVADELLQDIFLKVWENREQINEDLSFQA 75 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNG 123 +L IA+ + D +RR A + E E+ E QLL+ L L Sbjct: 76 WLYRIAENSVYDYYRRLARDAKMREHTLRTFAELYNHTEDYILNKERSQLLEKALSRLPP 135 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + + F L +L+G +Y E A L +S S+V + KA ++ + Sbjct: 136 QRQLIFKLCRLEGKSYEEAATLLNISTSTVSNQLVKATKNIKDY 179 >UniRef50_A8FB47 DNA-directed RNA polymerase sigma subunit n=2 Tax=Bacillus pumilus RepID=A8FB47_BACP2 Length = 188 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 2/166 (1%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS--ETLSTIRDPRSFLC 66 + E LY + L S++ + S A+++ Q+ F+++ E + S+L Sbjct: 18 HKPSLEVLYDRYERVLYSFIYKMTGSRELAEEVLQEVFIKLWRGIGEYHTDKGKFSSWLF 77 Query: 67 TIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTR 126 +++ +DL R+N E A + + E Q++ + L+ + + Sbjct: 78 MMSRNTAIDLLRKNRNETALEDEHIEYLADHQEDVSKEVEWNEEKQIIREAVSTLSKEQQ 137 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 G+T IA KLG+ I +VK V +++H G Sbjct: 138 TIIEDVYFKGMTQKSIAEKLGIPIGTVKGRVRLSLKHLRTRLSRGG 183 >UniRef50_A7LYM5 Putative uncharacterized protein n=5 Tax=Bacteroides RepID=A7LYM5_BACOV Length = 195 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 69/166 (41%), Gaps = 1/166 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + F L+ ++ L + + +DI Q+ FL++ I + Sbjct: 14 LVIALKQDDKQAFTRLFHIYYKDLVLFGGTYIPEKSTCEDIVQNIFLKLWNDRKSLVIEN 73 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +S+L + +D R + ++ + E + + L + L+ Sbjct: 74 SLKSYLLKAVRNYCLDELRHRRIIDEHIAYELKSDSIDIDTTENYILYSDLCRQLKNALE 133 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCL 165 L + RE F +S+L+ + Y EIA++L +S+ +V+ ++KA++ Sbjct: 134 QLPPQEREVFEMSRLENIKYQEIANRLNISVRTVEVRISKALKQLR 179 >UniRef50_C7PEI1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEI1_CHIPD Length = 208 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 2/164 (1%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCT 67 S E + + L ++ L+ +A D Q F+++ IR R++L Sbjct: 24 DSALLEQYFLEYFEVLHNYAYTILKDNDEAKDAVQAVFIQLWQKRESLQIRQSVRAYLYA 83 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGA-PSPEERESQLETLQLLDSMLDGLNGKTR 126 ++ + + + K + + A E++ + + + + L + R Sbjct: 84 ATHNHCLNHIKSSKIRKKHYDRFASGISSTGITDIEQQIVFADMRKEVLEAMKALPERCR 143 Query: 127 EAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 E F S+ + +Y+EIA +L +S+ +V+ + +A+ E Sbjct: 144 EIFFKSRFEEKSYNEIAAELQISVKTVEAQMGRALRTLRTILSE 187 >UniRef50_D2QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRQ4_9SPHI Length = 193 Score = 156 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 77/172 (44%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + F +LY H L + RKL+ A D+AQ+ FLR+ I + Sbjct: 11 LVALLRDDSEEAFRTLYERHWYDLFTLAKRKLRDEAMASDMAQELFLRLWQKRRTLLINN 70 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 ++L T K ++VD R + Y P + + + L+ L+ Sbjct: 71 VGAYLTTSLKHLIVDHVRTQLQGEQYASHFIHTPPTDTLNTLHSVQFSQLTESLNQALEQ 130 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L KTRE F+L++ + LT EI+ +LG+S +++ +++++V +Y Sbjct: 131 LPDKTREVFVLNRFEQLTIREISARLGLSEKAIEYHLSRSVAFLRANLHDYA 182 >UniRef50_C3QVX7 RNA polymerase ECF-type sigma factor n=4 Tax=Bacteroides RepID=C3QVX7_9BACE Length = 188 Score = 156 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 2/172 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIRDPR 62 + F +Y + L S++ ++L++ DI QDTFLR+ + L++ + + Sbjct: 11 ELRNGSYQAFTQIYEAYADRLYSFVLKQLKNRSLTQDIVQDTFLRLWDNRNQLNSFGNLQ 70 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLAL-MPEGGAPSPEERESQLETLQLLDSMLDGL 121 +F+ TIAK ++D FR+ E + + + + SPE+ E LQ L L Sbjct: 71 AFIFTIAKHQVIDYFRKQVNELQFEDFMEYCENQATDVSPEDILLYDEFLQQLQQSKKVL 130 Query: 122 NGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 + + E + LS+ + +IA +L +S +VK Y+ A++ ++Y + Sbjct: 131 SQREHEIYELSREKHIPIKQIAEQLDLSEQTVKNYLTSALKILRSEMMKYNI 182 >UniRef50_A1BCE5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCE5_PARDP Length = 166 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 92/154 (59%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 +LY HHGWL WL RKL + DA D+A DTFLR++ S PR+ L IAK + Sbjct: 11 LHALYADHHGWLHGWLRRKLGDSGDAADLAHDTFLRLLASRRSRLGERPRALLTHIAKGL 70 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLS 132 + D +RR +E+AYL+ +A +P P EER +E L +D+ML L TRE FLL+ Sbjct: 71 LADHWRRQRVERAYLDTIAHLPAVQVPPAEERLLVIEALTRIDAMLGRLPAFTREVFLLA 130 Query: 133 QLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 Q DGLT +I+ + + +V++++ KA+ C+ Sbjct: 131 QFDGLTLQQISERTQAPVITVRRHIRKALLACME 164 >UniRef50_D1ST93 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1ST93_9BURK Length = 171 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 2/155 (1%) Query: 14 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIRDPRSFLCTIAKRV 72 +LY HHGWL +WL RKL A D+A DTFLR++ + T L T+R+PR++L T A+R+ Sbjct: 13 SALYCEHHGWLLAWLRRKLGCGHQAADVAHDTFLRILGTPTVLPTLREPRAYLVTTARRL 72 Query: 73 MVDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++D RR +E+AYL+ LA++ G PS E+ ++ L +++ L L+ + ++AFLL Sbjct: 73 LIDEARRRVIEQAYLDALAVVAGTDGGPSTEQVVETIQALVRIEAALQDLSARAQQAFLL 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L+GL ++E+A LGVS V+KY+ +A+ C Sbjct: 133 HYLEGLPHAEVAAALGVSTRMVQKYLVQALVCCHQ 167 >UniRef50_C7PNR1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PNR1_CHIPD Length = 183 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 3/155 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIAKRVMVD 75 + + L + LQ +A D+ Q F+++ + RS+L T +R ++ Sbjct: 18 FQDNFERLHRYAFTLLQDNEEARDVVQQAFIKLWQKRDEINLELAGRSYLYTTVQRQCIN 77 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 +FR N + + Y + + + + + E + + +D L K RE F S+ + Sbjct: 78 IFRHNKVRRHYKDSVMATHQEEY--TDHQLENRELSNRISTAMDALPPKCREIFCKSRFE 135 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 Y+EIA +L +S+ +V+ + KA++ + Sbjct: 136 EKKYAEIAAELNISVKTVEVQMGKALKIMREQLAD 170 >UniRef50_B9XGS8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XGS8_9BACT Length = 182 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 1/167 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + +RA L H+ + ++L R + DA+D+ Q TF RV S + Sbjct: 8 LCERAKAGDMAAASELVTLHYQRVYAFLRRLCGNDQDAEDLTQKTFARVWTSLASFRGRS 67 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +++ IA V +D R+ E PSP E ++ E L S ++ Sbjct: 68 SFSTWVHGIAYHVCIDARRKRNHLDTMTEEWWETCVAEGPSPLENTAEREMATQLYSWVE 127 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L RE L GL+ E A LG++ S+VK + +A+E Sbjct: 128 TLESGVREVVHLHYYQGLSLQETAEVLGIATSTVKYRLRQALETLKA 174 >UniRef50_Q52208 PupI protein n=1 Tax=Pseudomonas putida RepID=Q52208_PSEPU Length = 173 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 2/158 (1%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75 LY H WL WL ++L + A D+AQDTF+R++ E + + PR+FL +A+ V+ + Sbjct: 15 LYRQQHSWLTRWLRQRLNCSQSAADLAQDTFIRLLNKEQVPQLHAPRTFLAKVAQSVLCN 74 Query: 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135 +RR LE+AYLE LA++PE PS E + LETL LD+ LDGL REAFLLSQ+D Sbjct: 75 HYRRQKLERAYLEALAMLPEPVVPSLETQAILLETLIALDAALDGLERPVREAFLLSQVD 134 Query: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 GL ++EIA +L VS+++VK+Y+ KA C L++ L Sbjct: 135 GLGHTEIAQRLAVSVTTVKRYIIKAGALC--IMLDHSL 170 >UniRef50_A6LCM4 RNA polymerase ECF-type sigma factor n=6 Tax=Bacteroidales RepID=A6LCM4_PARD8 Length = 237 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 1/173 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + F LY + L + + L+S A+D+ QD F + + Sbjct: 57 LVADLLEGDESAFCELYALYKDRLMWFSLKFLKSRDMAEDVFQDAFASIWQNRRFLNPNV 116 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++ TI K +++L E + + E+ + LLD L+ Sbjct: 117 PFGPYVYTIVKNRILNLLAGLDRELELRDKIRSASLDSTNETEDSVLDTDLNALLDKALE 176 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 L + + F +S+ D ++ EIA LG+S+ +V+++++ A++ F +Y Sbjct: 177 TLTPQQKRVFDMSRKDMKSHKEIADSLGISVYTVQQHISTALKVIRAFLAKYA 229 >UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacterineae RepID=Q1CXJ7_MYXXD Length = 211 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 68/184 (36%), Gaps = 13/184 (7%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR 59 + R T F+ L + + + L+ +A D++Q+ F++V + Sbjct: 15 LVKRVRTGDQRAFKLLVERYQRKVYAVALGMLKDKEEAMDVSQEAFVKVYKYLDHFKGDS 74 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP------------SPEERESQ 107 ++L I + +D+ R+ +E + +P++ + Sbjct: 75 SFYTWLYRITVNICIDVIRKRGGGGEVVEFDESQSVDLSEARIGALGSRLGTNPQKSALR 134 Query: 108 LETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 E + + L + K R LL +++G++Y ++A L + +V + A Sbjct: 135 RELAEKIQEALATVPEKHRAILLLREIEGMSYDDLARTLDIPKGTVMSRLFHARAKVQKI 194 Query: 168 RLEY 171 EY Sbjct: 195 LSEY 198 >UniRef50_C5SQB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SQB2_9CAUL Length = 177 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 82/156 (52%), Gaps = 2/156 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 F++L L + TR+ S+ DA+++ Q+ F+R++ + L + + ++ A + Sbjct: 16 FDTLVRRLRNPLMRFFTRRTGSSADAEELVQELFVRLLRRQDLLALENVDGYVFETAANL 75 Query: 73 MVDLFRRNALE--KAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 + D RR+ + + ++ L APS E+ + L L LD L + + + Sbjct: 76 IRDKARRDIVRASDRHDDVTGLSLATDAPSAEDSLVSRQRLARLIKALDTLPPRAQAIVM 135 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L + + ++Y+EI KLG+S+S+V+K++ +A++ L Sbjct: 136 LRRFEEMSYAEIGKKLGISVSAVEKHMVRAMDALKL 171 >UniRef50_C6W720 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W720_DYAFD Length = 197 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 1/168 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM-VSETLSTIR 59 + + F +L+ + + S R S+F A+++ QD FL++ ETL I Sbjct: 12 LLTEIAAGSERAFATLFHWYRDKVYSAAFRLTHSSFLAEEVVQDVFLKLWVKRETLLEIA 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +L + + + +R A ++ ++ L L + R LE +++ ++ Sbjct: 72 GFEDYLFIMTRNHVFSALKRMARQQQLVDDLQLELPVAENTTYNRILDLEIAEIVHQAVE 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L + ++ +L+S+ L EIA KL +S +VK ++A+A+ H + Sbjct: 132 LLPAQQKQVYLMSKEQELKREEIAKKLRISSETVKTHLARALRHIRAY 179 >UniRef50_C2FS22 RNA polymerase sigma-70 factor, ECF subfamily protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2FS22_9SPHI Length = 184 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 4/160 (2%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIAKR 71 FE ++ H L + R L+ + A+++ Q F+R+ + + I +++L Sbjct: 16 FEMIFREHFKDLHRYAFRFLEDSAIAEEVVQQVFMRLWERDWETDIHTSLKAYLYRAVYH 75 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ +R L++ Y E L + + E + L L L K+R F + Sbjct: 76 ESLNTLKREQLKRRYQEYQLLHEKDTEYMDQG---DSELKKQLHQALLQLPEKSRAVFEM 132 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 S+ L Y EIA L +SI +V+ +++KA+ H + ++Y Sbjct: 133 SRFQDLKYKEIADLLNLSIKTVEGHMSKALRHLRVHLVDY 172 >UniRef50_Q7W4H7 ECF-family sigma factor n=2 Tax=Bordetella RepID=Q7W4H7_BORPA Length = 162 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%) Query: 18 GTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLF 77 ++ L +L RKL ++ DA D+AQ+ + RV+ I PR+FL A + DL+ Sbjct: 2 EQYYTELLRFLARKLGNSHDAADVAQEAYARVLDRNGSCAIVQPRAFLFRAALNLCTDLY 61 Query: 78 R-RNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 R R + L+ A AP +ER + + L L+ L L R+AFL+ Q++G Sbjct: 62 RNRRGSQVMPLDAAAEAVRCEAPLQDERLYRRQQLARLERALQELPPACRQAFLMRQVEG 121 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL--EYG 172 +++ EIA+ LG+S+ V K++ +A+ HC E+G Sbjct: 122 MSHDEIANSLGISVDMVHKHLTRALRHCRSRMRAWEHG 159 >UniRef50_B0KMD3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMD3_PSEPG Length = 165 Score = 155 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRV 72 E + H G L+++L R+L++ A D+ Q+T+LR++ + + + RS L IA+ + Sbjct: 6 LELAFKAHAGELRAFLYRQLRNTDTAADLVQETYLRMLRQPPRAPVLNLRSLLFRIARNL 65 Query: 73 MVDLFRRNALEKAYLEMLALMPEGGAPSPE--ERESQLETLQLLDSMLDGLNGKTREAFL 130 ++D R + E +A + E SPE + L L+ L L + +E FL Sbjct: 66 VIDHTRSRGTRGQHDEGMAYLYEVTGESPEPFAEVAARRELALMAEALQRLPPRCQEIFL 125 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 L +L+G+ + +A +LGVS+S+V+K +A A++ Sbjct: 126 LCRLEGMAHKAVAEQLGVSVSTVEKQLAIALDFLGQSLQR 165 >UniRef50_C6I4J3 RNA polymerase ECF-type sigma factor n=5 Tax=Bacteroides RepID=C6I4J3_9BACE Length = 181 Score = 155 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST-IRDPRSFLCTIAKR 71 F +Y + L + L S ++++I Q+ F+ + + +++ ++L T+AK Sbjct: 6 FSEIYDIYFPKLLRFTRTYLISEDESENIVQEIFIYLWEHRDIIETLQNLNAYLFTLAKN 65 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGA----PSPE----ERESQLETLQLLDSMLDGLNG 123 +D FR+ + + L+ + S E +R S + ++L++ ++ L Sbjct: 66 RCIDYFRKEMVREVRKGSLSEIENRELQLKLYSLEAFDNDRLSDADIEEILNNAINRLPE 125 Query: 124 KTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + RE F++S+L L Y EIA KL VS ++V+ + A+ +Y Sbjct: 126 RCREIFIMSRLQNLRYKEIAEKLNVSPNTVENQIVIALRKLKEDLKDY 173 >UniRef50_Q4KBX1 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KBX1_PSEF5 Length = 230 Score = 155 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIRDPRSFLCTIAKRVMVD 75 + H+ L +LTR++ A D+AQ+T+L+++ + + R F+ +A + +D Sbjct: 71 FQEHYDDLLKFLTRRMSDRQRAADVAQETYLKLLKVDPQTVEVHNDRGFIFRVAGNLAID 130 Query: 76 LFRRNALEKAYLEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133 RR A L E AP+PE E L +LD L L+ R+A LL++ Sbjct: 131 TLRREQRLAANLSDGQEHAEAVDPAPAPEAVLLAKERLAVLDEALAQLSDNARQALLLNR 190 Query: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L+GLT ++IA +LGVS S V KY+ +A+ HC + + Sbjct: 191 LEGLTQAQIALRLGVSESMVAKYIGQALRHCRDWLKVH 228 >UniRef50_A9WPF4 RNA polymerase sigma-E factor n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WPF4_RENSM Length = 268 Score = 155 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 2/162 (1%) Query: 10 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIA 69 + ++E + H + R + FDA+D+ Q+ F+RV S T +L I Sbjct: 78 APSWEEVVRNHSAKVFRLAYRLTGNKFDAEDLTQEVFVRVFRSLANFTPGTLDGWLHRIT 137 Query: 70 KRVMVDLFRRNALEK--AYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 + +D RR + + A E G P PE + LD L R Sbjct: 138 TNLFLDQARRKSRIRFDALAEDAETRLPGRDPGPERSFEFNNLDVDIQKALDALPPDFRA 197 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 A +L L+GL+Y E+A L V + +V+ + + Sbjct: 198 AVVLCDLEGLSYDEVAAALDVKLGTVRSRIHRGRIMLRASLA 239 >UniRef50_C6ITD4 RNA polymerase ECF-type sigma factor n=7 Tax=Bacteroides RepID=C6ITD4_9BACE Length = 187 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 81/171 (47%), Gaps = 3/171 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + + F++ + ++ +K ++ LQS +A+D++QD FL + + + L TI Sbjct: 9 LLKAISEGDEKAFKTFFLYYYPRIKGFINGLLQSQEEAEDLSQDIFLTLWNNRSSLHTIN 68 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYL--EMLALMPEGGAPSPEERESQLETLQLLDSM 117 + + +L I+K + R L + Y E P + ++ E L+ + Sbjct: 69 NLKPYLFRISKNAVYRHIERALLFRNYQQKETEKYSPPQESNETDDTIHLKELELLVTMV 128 Query: 118 LDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 ++ + + ++ + +S+ G+ EIA +LG++ +V+ ++++A+ Sbjct: 129 VEKMPPQRQKIYKMSRESGMNNEEIARELGINKRTVENHLSQALTDIRKIL 179 >UniRef50_B0C3Y4 RNA polymerase sigma-24 subunit n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C3Y4_ACAM1 Length = 204 Score = 155 bits (393), Expect = 5e-37, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 2/171 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + E L+ + + + + L ++ +A+D+ Q+ FL V T + R Sbjct: 29 LVAAIKRQELDALEYLFDQYSSLVYTLAYKILGNSSEAEDLMQEIFLGVWERCTYNPSRG 88 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLAL-MPEGGAPSPEERESQLETLQLLDSML 118 SFL T+ + +D R + L + +P+P + SQ E Q L L Sbjct: 89 SLSSFLATVTRSRAIDRLRMKGNRRRILSQWQQSLSPNPSPTPLDHASQSEKRQALQQAL 148 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L + R+ LS G + S+IA +L + +VK + K + Sbjct: 149 TELPEEYRQVLELSYFGGYSQSQIAEQLNKPLGTVKTWARKGLIQLRQSLR 199 >UniRef50_C1AAJ5 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAJ5_GEMAT Length = 182 Score = 155 bits (393), Expect = 5e-37, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 2/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSE-TLSTIR 59 + R F++++ + + R L A+++AQD FL + +L Sbjct: 6 LLARLRDGDHAAFDTIFREWYPPVVRAANRILHEPGVAEELAQDVFLELWRRRESLPDGS 65 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 +L A+ ++ R + ++ A + E + + Sbjct: 66 SIPGYLLQAARNRALNHLRHLQGRRK-TQVFVEALVEPAEHADADTQAAELEVAIRDAIA 124 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 L +TRE FL+S+ L YSEIA +LGV++ +V+ +++A+ + Sbjct: 125 ELPPRTREVFLMSRERNLRYSEIAEQLGVTVKAVEANMSRALRQLREKLSPF 176 >UniRef50_C7PU34 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PU34_CHIPD Length = 171 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%) Query: 9 ASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCT 67 TFE ++ HH ++ + +A+++ Q FLR+ + I RS+L Sbjct: 3 DRQTFEDIFREHHAACLAFAVHYTGNVHEAEEVVQQVFLRLWEKRAVIDITGATRSYLLA 62 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAP--SPEERESQLETLQLLDSMLDGLNGKT 125 + + +R+ + + + + P SP E + L+ L + Sbjct: 63 AIRNTAISNWRKETVRQEKEQTAGHLQAADVPVQSP-----VWELEKRYQQALEVLPERC 117 Query: 126 REAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 RE F+LS+ L Y EIA + +S+ +V+ + KA++ +Y Sbjct: 118 REVFILSRQQQLKYHEIAEVMNISVKTVENQMGKALKIMHRELRDY 163 >UniRef50_Q4K9E5 RNA polymerase sigma-70 factor, ECF subfamily n=8 Tax=Proteobacteria RepID=Q4K9E5_PSEF5 Length = 181 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 1/152 (0%) Query: 17 YGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDL 76 + H+ L TR+L++ A+D+A DTF+RV+ S+ +T++ PR++L A+ + VD Sbjct: 26 FFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESDA-ATVQQPRAYLHQTARNIAVDA 84 Query: 77 FRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDG 136 FRR A E + + PE ++ ++ L L R+ F+ +++G Sbjct: 85 FRREDRRGALEEQGVHLSVSPSGDPEHFMHAIQLADSIERALGELPVNCRKVFVWQKIEG 144 Query: 137 LTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 LT +EIA +LG+S + V+KY+ + + H Sbjct: 145 LTQAEIAERLGLSKNMVEKYMIRTLRHLRDRL 176 >UniRef50_C7PPF3 Transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PPF3_CHIPD Length = 180 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 5/169 (2%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + +R + + F+ +Y + L + L+ + A+DI Q+ F + + S I+ Sbjct: 11 LLNRVRLSDAKAFDEIYLRYWRKLYALAFYHLKDSEAAEDIVQEIFTSLWAARERSDIKY 70 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG 120 ++L T K + F + + A LE L +P PS E R Q E ++ ++ Sbjct: 71 LYTYLATATKYAVFHHFAQPSNSTASLEELLSLPV-EQPSAESRLLQDE----INREINR 125 Query: 121 LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 L K R F S+ +GL I+ KL +S +V+K++ +A+ + Sbjct: 126 LPEKCRLVFHYSREEGLGNKNISEKLNISTKAVEKHITRALRQLRVQLK 174 >UniRef50_Q1GQ36 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sphingopyxis alaskensis RepID=Q1GQ36_SPHAL Length = 202 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 4/164 (2%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS 63 R T E++Y TH L +L RK +A D+ Q+ F R SE + +P Sbjct: 36 RPATG--QDLETVYRTHRSSLFHFLRRKAG-PEEASDLVQEVFARAAGSEQRHQLVNPGG 92 Query: 64 FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEE-RESQLETLQLLDSMLDGLN 122 FL IA+ +++D RR L L + P+ +E + L+L + +D + Sbjct: 93 FLRRIAQNLLIDRARRRKSAPKALFSLREESDAVTPATQEWNLEAADLLELYEKAVDAMP 152 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 KTR FL+ ++D L+Y EI +LG+SI++V+ ++ KA+ Sbjct: 153 PKTRRVFLMHRVDELSYREIHEQLGISIATVEYHMMKALGRIAK 196 >UniRef50_C2FTY9 RNA polymerase sigma factor n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTY9_9SPHI Length = 195 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 78/174 (44%), Gaps = 1/174 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + + + +H G + S+ + +S A+++ QD FL + +S + L + Sbjct: 12 LLIKISKGDEHALAVFLKSHSGHVYSFALKLTRSRELAEEVVQDVFLNIWLSRSKLDEVH 71 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + ++L I + V +++ R+ A + E + E ++ +L +D Sbjct: 72 NAEAYLNRITRNVSLNVLRKIARSVIIAGVFEDDAEYPDDNTRELLDLKDSQWILQQAID 131 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L + ++ + L GLTY + A +L +S S+V ++ +A+++ E G+ Sbjct: 132 KLPKQQKKVYQLCHEQGLTYDQAAAQLEISCSTVNFHIKEALKNIRKSLKEMGI 185 >UniRef50_D2QL29 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QL29_9SPHI Length = 227 Score = 154 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 1/155 (0%) Query: 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIAKRVMV 74 L+ ++ L + R + S A+D+ + F T I R++L + Sbjct: 53 LFRRYYTNLVNHAVRFVYSKEVAEDLVAEVFAVFWQDRTFEHITTSYRAYLYKAVRHRAY 112 Query: 75 DLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQL 134 + R E LE + P++ E Q ++S++ L + + AFLLS++ Sbjct: 113 NYLRWELRESDSLESADKQSIPASLQPDQVLHYSELHQKIESIIQNLPPQCQRAFLLSRI 172 Query: 135 DGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 +G Y+EIA + ++ S+V+K + +A+ Sbjct: 173 EGKKYAEIAQDMKITNSAVEKLLIRAISKLRQDLK 207 >UniRef50_C1DNR4 ECF sigma factor, FecI family n=14 Tax=Pseudomonadaceae RepID=C1DNR4_AZOVD Length = 194 Score = 154 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 1/162 (0%) Query: 8 TASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCT 67 F ++ +++ ++R++ A D+ QD FLR + + +P ++L Sbjct: 19 GEEQDFLRVFLAQRERMEALVSRRVGCRATAADLIQDLFLRFW-KRPMRQLDEPGTYLLR 77 Query: 68 IAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 A+ + +D R L+ L +G S E + L+L+++ L GL +TR Sbjct: 78 SARNLAIDHLRGEGKRNRSLDSLGPEHDGATASLETALQAGDELRLVEAALRGLPERTRH 137 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 FLL+++ G TY EIA +G+S S+V+K++ +A++ C Sbjct: 138 IFLLNRIHGRTYGEIARAMGLSQSAVEKHMMRALDTCKAALE 179 >UniRef50_A0LEX1 Transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEX1_SYNFM Length = 205 Score = 154 bits (392), Expect = 8e-37, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 2/172 (1%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + + A FESL G + G L +++ R L A+D+AQ+ FLRV + R Sbjct: 26 LVNAAGRGDVDAFESLVGRYQGPLLNFIARILGDRGAAEDLAQEVFLRVYRAAPRFEART 85 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALM-PEGGAPSPEERESQLETLQLLDSML 118 +++ IA + + R + E L E + + E + + S L Sbjct: 86 KVSTWVFRIAYNLAMTELDRRKRRRTLAEALHRNGEEASREALADPGEDREFQEEIASAL 145 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 DGL G R LL L+Y EIA LG S+ SV+ + +A + Sbjct: 146 DGLPGNQRAVLLLRLHQDLSYREIAEILGTSLGSVESLLFRARKTLRESLRR 197 >UniRef50_D0TMA3 FrrE n=4 Tax=Bacteroides RepID=D0TMA3_9BACE Length = 195 Score = 154 bits (392), Expect = 8e-37, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 1/172 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR- 59 + R ++E+L+ ++ ++ L+ A A+DI Q+ F+++ + Sbjct: 15 LLQRLREGDMGSYETLFHRYYPTFFAFAKGMLKDAGAAEDIIQNVFMKIWIHREALDETM 74 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++++ ++KR + + R L + E + E E + + S+++ Sbjct: 75 SIKNYIYVLSKREVFNHLRAKYNTHVVLTEDMMTLERPSSIDEPTTDYRELREAVQSVIN 134 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + K R F LS+ LT EIA KLG+SI +V+K++ A+ + Sbjct: 135 TMPPKRRSVFCLSRFKSLTNQEIADKLGISIRTVEKHIELALRTFKEQLGSF 186 >UniRef50_C6XYK7 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XYK7_PEDHD Length = 195 Score = 154 bits (391), Expect = 9e-37, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 1/167 (0%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMV-SETLSTIR 59 + ++ F +Y + + ++ + L+S+ +DDI Q+ FL++ E LSTI Sbjct: 9 LLQLVSSGNEEAFTIIYERYRLRVYLFIKKYLKSSQLSDDICQNVFLKIWENKEELSTIN 68 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 ++ TIAKR +D +R A+E+ + ++ EE + E L +D+ L Sbjct: 69 SFNAYAFTIAKRQCLDFLKRAAVEQTAMNLILQAYPLDNNITEENQQYNEYLNFIDNTLL 128 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166 L +T+E F L + +Y E A LG+S ++KK++ ++++ Sbjct: 129 RLPPQTQEVFKLCRQQYKSYDEAAAILGISRHAIKKHMVRSMKVLRT 175 >UniRef50_Q2L0R0 RNA polymerase sigma factor n=1 Tax=Bordetella avium 197N RepID=Q2L0R0_BORA1 Length = 163 Score = 154 bits (391), Expect = 9e-37, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST-IRDPRSFLCTIAKR 71 +++ H+ WL W R+L A +A D+A DTFLRV+ + +R PR++L IA+ Sbjct: 5 LQAVCEDHYVWLCQWWRRRLDHADEAADLAHDTFLRVLRKPEEISCLRQPRAYLTPIARG 64 Query: 72 VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131 ++ D +RR +LE+A+LE LA +P +P+ + LQ LD ML L + RE F+L Sbjct: 65 LLNDHWRRRSLERAWLEALAQLPPEYEIAPDMLLQMQQALQHLDDMLAALAPRAREVFVL 124 Query: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 SQL+GL+Y++IA + G++ +VK+Y+A++ EHCL Sbjct: 125 SQLEGLSYAKIAAQTGLNERTVKRYMAQSFEHCLTL 160 >UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QYW7_CHLT3 Length = 317 Score = 154 bits (391), Expect = 9e-37, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 13/183 (7%) Query: 1 MSDRATTTAS----LTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETL 55 + D+ ++ L + G + + + + + + + +D+ Q+TF + S E Sbjct: 130 LIDQICDGDPHKRDQAYKRLLNKYRGQIFNLILKIIHNQNEVEDLVQETFSKAFNSIENF 189 Query: 56 STIRDPRSFLCTIAKRVMVDLFRRNALEKAYLE--------MLALMPEGGAPSPEERESQ 107 + ++L IA +D R+ L+ L+ + + P + Q Sbjct: 190 NKEYAFSTWLYRIATNSSIDYLRKRRLKTYSLDNPITTKDDEYTIEIPDSSEEPGKNIMQ 249 Query: 108 LETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 + L+ S + L K R+ + L TY EIA L + + +VK ++ +A E Sbjct: 250 SQRDALVRSAIKNLPPKYRKVIEMRHLQERTYEEIAADLDIPLGTVKAHIFRAREMLYKM 309 Query: 168 RLE 170 + Sbjct: 310 LRD 312 >UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISX0_ACIBL Length = 200 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 14/183 (7%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI--R 59 R + +E + + + + R S DA D+ Q+ F+++ + Sbjct: 11 VRRCVAGDTAAWEDIVRQTNRRIYNLCYRFSGSPDDAQDLTQEVFIKIYRTLGSFDSGKA 70 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLE------------MLALMPEGGAPSPEERESQ 107 +++ T+ + ++VD FR+ ++ L +P+ER Sbjct: 71 SFVTWVTTVTRNLLVDHFRKGKYDRMTDSLDAPMGDEEDGLALGSQIADKGQTPDERLES 130 Query: 108 LETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 ET +L+ L L+ + REA +L L + Y EI+ L + +VK + + Sbjct: 131 RETKELVHKALQKLSPELREAVILRDLQDMDYKEISQILKIPEGTVKSRINRGRTELARL 190 Query: 168 RLE 170 Sbjct: 191 LQR 193 >UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSK7_DYAFD Length = 192 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 6/168 (3%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSET-LSTIR 59 + + F L+ +H WL + R +S A+++ D FL++ ++ LS I Sbjct: 13 LLRQVAAGDERAFSRLFDHYHQWLGMHIYRITRSEQIAEELVHDVFLKIWLNRELLSGIE 72 Query: 60 DPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLD 119 + +L I+K ++ ++ A+E++ L E G PE+ + L+D +D Sbjct: 73 NFSVYLFVISKNAALNALKKIAVERSRFTDL---DEAGDIMPEQPDDYR--YALIDEAID 127 Query: 120 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 167 L + R+ ++LS+ L+YSEIA ++G+S +VKKY+ A + Sbjct: 128 RLPPQQRQVYMLSRHQRLSYSEIALRMGLSRETVKKYLQIATASIVTH 175 >UniRef50_C6W0H1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W0H1_DYAFD Length = 197 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 79/162 (48%), Gaps = 2/162 (1%) Query: 13 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTI-RDPRSFLCTIAKR 71 +E L+ ++ L S R + + A+DI + F + + +++ RS+L T + Sbjct: 24 YELLFKRYYKQLCSHAVRFVYARDVAEDIVVEVFSQFWSKQLHTSVNTSYRSYLFTTVRH 83 Query: 72 VMVDLFRRNALEKAYLEMLALMP-EGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFL 130 RRN ++A + L +P SP++ E + ++ ++ L+ + ++ FL Sbjct: 84 AAFHYMRRNFGKEALTDDLGDLPVAAPESSPQQELQFQELVLKIEQVIRSLSPQNQKVFL 143 Query: 131 LSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYG 172 +S+ +G + IA +LG+S+ +V+ ++ K + ++G Sbjct: 144 MSRFEGKRNTAIAEELGISVKTVEGHITKGLSILRKALQDHG 185 >UniRef50_C6VSP5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSP5_DYAFD Length = 191 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 79/174 (45%), Gaps = 8/174 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + + + FE ++ + L + + L +A DA D+ Q+ F+ + + Sbjct: 12 LLEMFQEGSVAAFEEIHRRYFRRLYAHAFKMLGNAEDAQDVVQEVFISLWAKGAGVRLHT 71 Query: 61 -PRSFLCTIAKRVMVDLFRRNALEKAYLEMLAL---MPEGGAPSPEERESQLETLQLLDS 116 +L T + +++L + + + +++ LA A P+E LL++ Sbjct: 72 GLAGYLFTSVRNRVLNLIEQKTVYQHHIDGLAAFLRENPAPAGDPDEEILFS----LLEA 127 Query: 117 MLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 ++ L K +E F L + ++Y+EIA +L +S +VKK ++ A++ ++ Sbjct: 128 EIENLPRKMKEVFELRRKGEMSYAEIADQLALSDHTVKKQISNAIKILRDRLVQ 181 >UniRef50_D1W7B2 RNA polymerase sigma-70 factor n=2 Tax=Prevotella RepID=D1W7B2_9BACT Length = 207 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 8/179 (4%) Query: 1 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD 60 + D + FE ++ T+ LK++ R + D +DI QD F+++ S T Sbjct: 6 LFDDLRLGKAEAFEFIFKTYQPRLKAYAFRFIHQPDDLNDILQDCFVKLWESREKLTHIS 65 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAP--------SPEERESQLETLQ 112 S L T+ + ++ R + Y +G + EE E + Sbjct: 66 ISSLLYTMVRNACLNFLRHQMVANQYSFDELPQQQGAEQLYSLIFHHNAEEELVYEELHR 125 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 + +LD L +++ F +S+ + L EIA KLGVS+ +V+ ++ K + +Y Sbjct: 126 QIHEVLDSLPEQSKMIFKMSREEDLLNREIAEKLGVSVKTVEYHITKVLCALRSLASKY 184 >UniRef50_B7KZS3 RNA polymerase, sigma-24 subunit, ECF subfamily n=7 Tax=Rhizobiales RepID=B7KZS3_METC4 Length = 180 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 4/163 (2%) Query: 12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71 + ++LY L+ +L R L + DA D +Q+T+LR++ + + ++I P + L IA Sbjct: 16 SIDALYRHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRTSIEHPSALLFRIATN 75 Query: 72 VMVDLFRRNALEKAYL----EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTRE 127 V + + R LE+ E G PE + + L+ L + +D L + RE Sbjct: 76 VALRMRNRGRLERILFAAKCEAELAEIADGYALPERQTIARQELKRLAAAIDALPPRCRE 135 Query: 128 AFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170 FLLS+LDGL EIA +LG+S + V+K++ KA+ HC RL+ Sbjct: 136 VFLLSRLDGLANGEIAQRLGISRNMVEKHIIKALLHCRRSRLD 178 >UniRef50_Q07TI3 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Rhodopseudomonas palustris RepID=Q07TI3_RHOP5 Length = 198 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 3/166 (1%) Query: 5 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRS- 63 AT FE L+ LKS+ T A A++I Q+ + V + + Sbjct: 26 ATAQDETAFELLFRHFAPRLKSYFTNLGGDAAMAEEITQEAMVAVWKNAGQFDPAKASAA 85 Query: 64 -FLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 ++ TIA+ + +D FR A A+ P+ + ++E Q + +L+ L+ Sbjct: 86 TWVFTIARNLSIDRFR-QARRPAFDPNDPAFIPEDEEPPDRQLERVEAEQKVREVLNSLS 144 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFR 168 + +LS + ++ EIA +LG+ + +VK + A Sbjct: 145 PNEQSVLMLSFYENRSHGEIAERLGLPVGTVKSRIRLAFGKLRAAL 190 >UniRef50_C6I530 RNA polymerase ECF-type sigma factor n=15 Tax=Bacteroidales RepID=C6I530_9BACE Length = 193 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 3/169 (1%) Query: 4 RATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLST-IRDPR 62 + FE+L+ H+ L ++ + D +I D + + ++ + + Sbjct: 17 QVQQGNEGAFEALFLRHYPALCAYARLFV-EPDDGQEIVSDVMVWLWENKEMQAFESSLK 75 Query: 63 SFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLN 122 S+L K + L RN +++ +M+ + P+ E + ++ L L Sbjct: 76 SYLFKAVKNRCLTLINRNEVKQRIEKMIFDNLQSQYDDPDFYAI-QELTEKIEEALARLP 134 Query: 123 GKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171 REAF L++ LTY+EIA +LGVS ++ + +A++ + EY Sbjct: 135 ENVREAFELNRFQNLTYNEIAERLGVSPKTIDYRIQQALKQLRIDLKEY 183 >UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDB7_RHOM4 Length = 198 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 9/177 (5%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-D 60 A +++L + L+ + R ++ D DD+ Q+TF++ + + + Sbjct: 16 VAEALQGNEAAYQALMDKYRPALRRHIARIVRDPRDLDDLVQETFIKAFTALSTYSTEYA 75 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEM--------LALMPEGGAPSPEERESQLETLQ 112 ++L IA +D RR L L+ L P+ + + Sbjct: 76 FSTWLYKIATNHAIDYLRRKKLRTLSLDEPIQTKEGTLERELADTTYFPDRHIVEDQRRM 135 Query: 113 LLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRL 169 LL ++ L K R ++ +Y EIA +L + + +VK ++ +A + Sbjct: 136 LLQEAINALPEKYRRVIVMRHQQEKSYEEIAEELNLPLGTVKAHIFRARRLLYKYLR 192 >UniRef50_A6LES7 RNA polymerase ECF-type sigma factor n=4 Tax=Bacteroidales RepID=A6LES7_PARD8 Length = 190 Score = 153 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 3/175 (1%) Query: 2 SDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-D 60 +R + + F LY ++ L ++ S A DI Q+TF++V V + Sbjct: 8 LERLRSGSYRDFTKLYESYASRLYAFALHLTHSDALAKDIVQETFIKVWVRREQIDLDMS 67 Query: 61 PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMP--EGGAPSPEERESQLETLQLLDSML 118 +FL T+AK +++ FRR A +LE + L +G + E + S E L+ Sbjct: 68 FSAFLFTMAKNQLLNEFRRQANSPLFLEDVVLNESGDGEETAIERKLSFEEFNHRLEIAK 127 Query: 119 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173 L + RE F L++ G+T +EIA K +S SV+ +++A+ +Y L Sbjct: 128 QKLTPRQRELFELNKEQGITITEIAAKAFISEQSVRNQLSQALHVLRKELGKYAL 182 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.204 0.653 Lambda K H 0.267 0.0628 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,670,483,047 Number of Sequences: 3077464 Number of extensions: 111907264 Number of successful extensions: 461841 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 11211 Number of HSP's successfully gapped in prelim test: 5384 Number of HSP's that attempted gapping in prelim test: 430184 Number of HSP's gapped (non-prelim): 18040 length of query: 173 length of database: 1,040,396,356 effective HSP length: 120 effective length of query: 53 effective length of database: 671,100,676 effective search space: 35568335828 effective search space used: 35568335828 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 90 (38.7 bits)