BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (113 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap... 233 1e-60 UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr... 142 3e-33 UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro... 114 1e-24 UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot... 105 6e-22 UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot... 94 1e-18 UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3... 91 2e-17 UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax... 75 5e-13 UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr... 74 1e-12 UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm... 73 3e-12 UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=... 69 6e-11 UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P... 69 6e-11 UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation... 66 4e-10 UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick... 65 5e-10 UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami... 62 8e-09 UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be... 60 3e-08 UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C... 59 7e-08 UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ... 58 8e-08 UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits... 58 8e-08 UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot... 57 2e-07 UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo... 57 2e-07 UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari... 55 7e-07 UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob... 54 1e-06 UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo... 54 1e-06 UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ... 54 1e-06 UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3... 54 1e-06 UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot... 54 2e-06 UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein... 54 2e-06 UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu... 52 4e-06 UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3... 52 6e-06 UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil... 52 6e-06 UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A... 52 7e-06 UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3... 52 7e-06 UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe... 51 9e-06 UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D... 51 1e-05 UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot... 51 1e-05 UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio... 51 1e-05 UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst... 51 1e-05 UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3... 50 2e-05 UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3... 50 2e-05 UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3... 50 3e-05 UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot... 50 3e-05 UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther... 49 4e-05 UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3... 49 4e-05 UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac... 49 5e-05 UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation... 49 5e-05 UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad... 49 7e-05 UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys... 49 7e-05 UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot... 48 8e-05 UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis... 48 9e-05 UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes... 48 1e-04 UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3... 48 1e-04 UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ... 47 1e-04 UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R... 47 1e-04 UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M... 47 2e-04 UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3... 47 2e-04 UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3... 47 2e-04 UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3... 47 2e-04 UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot... 47 2e-04 UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl... 47 2e-04 UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3... 46 3e-04 UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot... 46 3e-04 UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium... 46 4e-04 UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)... 46 4e-04 UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3... 46 4e-04 UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor... 46 4e-04 UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c... 46 4e-04 UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta... 46 4e-04 UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot... 46 5e-04 UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation... 46 5e-04 UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R... 45 5e-04 UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri... 45 5e-04 UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr... 45 6e-04 UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3... 45 6e-04 UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa... 45 7e-04 UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation... 45 8e-04 UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot... 45 0.001 UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA 44 0.001 UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ... 44 0.001 UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3... 44 0.001 UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3... 44 0.002 UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3... 44 0.002 UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ... 44 0.002 UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo... 43 0.002 UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth... 43 0.002 UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri... 43 0.003 UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce... 43 0.003 UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3... 43 0.003 UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo... 43 0.003 UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot... 43 0.003 UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost... 43 0.003 UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2... 43 0.004 UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3... 42 0.004 UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri... 42 0.005 UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3... 42 0.005 UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3... 42 0.005 UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil... 42 0.006 UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3... 42 0.007 UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia... 42 0.008 UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul... 41 0.011 UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3... 41 0.011 UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg... 41 0.013 UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3... 41 0.015 UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG... 41 0.015 UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac... 40 0.017 UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid... 40 0.019 UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p... 40 0.019 UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic... 40 0.021 UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali... 40 0.022 UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3... 40 0.024 UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba... 40 0.028 UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro... 40 0.030 UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3... 40 0.033 UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.033 UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=... 40 0.034 UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida... 39 0.037 UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3... 39 0.052 UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid... 39 0.057 UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p... 39 0.059 UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida... 39 0.062 UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation... 39 0.065 UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl... 38 0.088 UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 38 0.094 >UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria RepID=RAIA_ECO57 Length = 113 Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV Sbjct: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 >UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria RepID=RAIA_HAEIN Length = 107 Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/104 (64%), Positives = 83/104 (79%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MT+NITSKQM+ITPAIR+H+ +RLAKL KWQT LI+PH +L+K P GF +A+I TP G Sbjct: 1 MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L+AS +DMY AINE+ KLERQLNKLQHK E+RRA +KD+ Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESRRADERLKDS 104 >UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF930 Length = 129 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/93 (59%), Positives = 71/93 (76%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M++NI+SKQM+ITPAIR H+ +RLAKLEK+ T LINPH +L K+P F +ATI TP G Sbjct: 36 MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGE 93 LVA +HED+YTAI ++ KLE +L KL+ K E Sbjct: 96 LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEKNE 128 >UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Psychromonas RepID=A1SRN9_PSYIN Length = 136 Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 52/103 (50%), Positives = 68/103 (66%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ITSKQ+ IT +R V +R KLEK Q LI PH+I++KEP+G +ATIN PN Sbjct: 1 MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + A +++D+Y AI +L KLERQL K HK EA RA + KD Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKYLHKSEASRAKNNGKD 103 >UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21 Tax=Shewanella RepID=A3QBU6_SHELP Length = 124 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/94 (45%), Positives = 60/94 (63%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLV 62 + ITSK E+T IR+ + RL KL + LINPH+I+ +E QGF +A++ P+ L Sbjct: 2 IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61 Query: 63 ASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 A K +D+Y AIN + KLE+QLN+L HK E R Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHKPEGAR 95 >UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT Length = 110 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 65/96 (67%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ITSK +++TP+IR++V + KLE+ Q +I+PH+ + KE + +V +A I P G Sbjct: 1 MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 L A +HED++ AIN L KLERQ+ + H+ +ARR Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRHIHRPDARR 96 >UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM Length = 128 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 1/99 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVA-DATINTPNG 59 MT ITSK++++T + + +A + AKLE++ +INPH+ +SK+ +A+I+ P G Sbjct: 1 MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 L+A + ED+Y AI L KLERQLNK K A ++ Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAHKSG 99 >UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria RepID=B6EGD2_ALISL Length = 120 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 2/99 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQG-FVADATINTPN 58 M + IT ++ITP IR+ + + KLE K +I H ++K G +A + Sbjct: 1 MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 G + AS + ED++ I E+ KLERQL+KLQHK EARRA Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEARRA 99 >UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria RepID=B5JSL3_9GAMM Length = 117 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 4/93 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPN-- 58 M +N+T +++T A+R +V D+ +LE+ H+ H+IL E A+A ++ P+ Sbjct: 1 MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 G L A +HEDMY AI+ L++KL+RQL L+HK Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQL--LKHK 91 >UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular organisms RepID=RP5M_SALTY Length = 95 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 55/87 (63%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NIT +EIT A+R+ V + AKLE++ + +++L E ++DAT++ G Sbjct: 1 MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNK 87 + AS + +DMY AI+ LI+KL RQL + Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTR 87 >UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria RepID=RP5M_PSEPK Length = 102 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 59/94 (62%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ + +E+T +R +V ++LA++E + N +I+ E +AT+ P G Sbjct: 1 MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEA 94 +VA+ +HEDMY AI+ L +KL+RQL K + K ++ Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEKQQS 94 >UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98 Tax=Gammaproteobacteria RepID=A1RNM6_SHESW Length = 95 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 55/87 (63%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +EIT ++R +V ++ +KLE+ + N H++L+ E +A+A IN G Sbjct: 1 MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNK 87 + A+ +H DMY AI+ LI+KL+RQ+ K Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIK 87 >UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli RepID=A8PQ11_9COXI Length = 111 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 61/102 (59%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT +++T A++Q++ D+ +LE+ HI LS E VA A ++T Sbjct: 1 MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 A K+E++YTAI+ELI+K+E+Q+NK + K + +R S K Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKEKRHDRSEK 102 >UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2 Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV Length = 96 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATIN-TPNG 59 M NIT + ++I+PA+R+H+ L +LE+ ++ + + L +A+ T++ + Sbjct: 1 MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A G+HEDMY AI+ L KLE+QL + + K E R Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96 >UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria RepID=Q7W3J9_BORPA Length = 112 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 62/100 (62%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++I + +++TPAIR++V ++LA++ + H+I+ ++LS EP A+ T+ Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + E++Y AI+ L++K++RQ+ K + K ++ A ++ Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSHSAESA 100 >UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales RepID=Q97F93_CLOAB Length = 174 Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 59/105 (56%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ++ K +E+T +R+ V +++KLEK+ + H+ LS E + + TI + Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 L + DMY +I+ + +KLERQ+ K + K E R+ + S+K N Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERRKYSDSLKFQN 105 >UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella RepID=B0TYD3_FRAP2 Length = 102 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 2/95 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + +E+T AI+ +V +++ K+ + ++ + +IL E VA+A + P Sbjct: 1 MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 VA + +D+Y AI+ L +KL RQ+ K HK + R Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKK--HKNKLR 93 >UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ3_9FIRM Length = 181 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVL 61 T + K +EITP++R++V R+ K+ K+ + + ++L+ + + T+ P G+L Sbjct: 3 TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIL 62 Query: 62 VASGKHE-DMYTAINELINKLERQLNKLQHKGEARR 96 + + DMYT+I+ ++ KLERQ++K Q ARR Sbjct: 63 LRGEESTMDMYTSIDLVVEKLERQIHK-QKTKLARR 97 >UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH Length = 113 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT +++T A++ +V ++ +LE+ ++++ H+ILS E A+A + Sbjct: 1 MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNK 87 L A EDMY AI+ +I+KL+RQL K Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVK 87 >UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI17_THEYD Length = 173 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 1/112 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I K +++T A++Q++ R+ K E++ T + +S E D + + Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK-DANFVEEVE 111 + A GK ED+Y+A+++++ KLE+Q+ K + K + + ++K + EEVE Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQNKNKKETIKYPSALSEEVE 112 >UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWV9_9PROT Length = 212 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 7/119 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++IT + +E+T ++ +V D+L L+ H+++ H++LS E + ++ NG+ Sbjct: 26 MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQA-NGI 84 Query: 61 LV-ASGKHEDMYTAINELINKLERQLNKL-----QHKGEARRAATSVKDANFVEEVEEE 113 + S + EDMY +I+ +I+K+ RQL + +H+G +R +K ++ V +V E Sbjct: 85 NIHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRHQGGGQREGRQIKVSHRVLDVAAE 143 >UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria RepID=A5CWW3_VESOH Length = 102 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ ++IT AI+QH +L K++ +IN ++IL + A+A I+ Sbjct: 1 MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK-GEARRAATSV 101 L A + DMY +I++++NKL+ Q+ K + K R+ T++ Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNHRKKLTTI 102 >UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FF9 Length = 104 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT ++ITPAI ++ + K+E + LIN LS E VA++T++ P Sbjct: 1 MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQ------HKGEARR 96 + A DMY AI LI KL+ Q+ K + HK E+ R Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNHHKLESPR 102 >UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation protein family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G806_SORC5 Length = 122 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + M T A++ + +++AKL+K+ + + LS E VAD +++ + Sbjct: 1 MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQ-HKGEARRAATSVKDANFVEEVEEE 113 A+ + EDMY +I+ + +KLERQ+ + H +R TS + + EVE E Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIRDGKGHTIARKRGGTSAGE--YAVEVERE 112 >UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Gammaproteobacteria RepID=A6W0C2_MARMS Length = 105 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVL 61 T I+ +++TPAI+ H+ ++L+K+ K + + ++ L K+ + A+A ++ P + Sbjct: 3 TTKISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEI 62 Query: 62 VASGKHED-MYTAINELINKLERQLNK 87 AS ED ++ AI+++++KL +Q++K Sbjct: 63 FASASSEDRLFHAIDDMVDKLAKQIDK 89 >UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM Length = 180 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+T + +E + +R + +++++++K+ ++ H++L E +A+ TI+ NG+ Sbjct: 1 MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDA-NGL 59 Query: 61 LVASGKH-EDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + + +DMY+AI++L + LE Q+ K + K R+ T KD Sbjct: 60 RINGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRRKPVTMGKD 103 >UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJD6_9BACT Length = 178 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT++ E+T AIR +V +KL K+ +I H +L+ E + + +++ Sbjct: 1 MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 L + + DMY AI+ + K+E Q+ KL+ + Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDR 91 >UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii RepID=A9KDT2_COXBN Length = 96 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T + ++I+PA+R+ +L +++ + + N HII + DA + P Sbjct: 1 MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQ-HKGEAR 95 + A + +DMY ++ L++KLE QL+K + KG+ R Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDHR 96 >UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP Length = 178 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 17/119 (14%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT+K +++TPAI+ RL K+EK+ ++ I LS D IN + Sbjct: 1 MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLS-------VDKKINQKAQI 53 Query: 61 LV---------ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 +V A+ D+Y AI+ K E QL K++ K ++RR+ + NF++ V Sbjct: 54 IVHVGNKNTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSRRSKKE-EIVNFIDPV 111 >UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUS0_9FIRM Length = 176 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 50/95 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + K +++ ++ + +KL+K+ + + SK+ G + TI P + Sbjct: 1 MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 L A +DM+ +I++ ++KLERQ+ K + + + R Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKR 95 >UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter RepID=RP5M_ACIGB Length = 113 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ----------GFVA 50 M + I + ITPAI +++ DR ++ K + + + LSK+ Q +A Sbjct: 1 MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNK 87 +A + P L A +DMY AI +L +KL+RQL+K Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDK 97 >UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Fusobacteriaceae RepID=C7N909_LEPBD Length = 106 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 60/98 (61%), Gaps = 9/98 (9%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I+ KQ++IT AI+ + ++++++ K+ + ++L+ E ++ ++ +G+ Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTK--SEGPVHKADGL 58 Query: 61 LVASG-------KHEDMYTAINELINKLERQLNKLQHK 91 + ASG +++D+Y AI++L ++LERQ+ K + + Sbjct: 59 VFASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKER 96 >UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B9Y7S1_9FIRM Length = 178 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINP----HIILSKEPQGFVADATINT 56 M I K + IT A+RQ + +L+ L+K+ LI+P +++ P + TI T Sbjct: 1 MKFEIVGKNVSITEAMRQKIERKLSFLDKYL--LIDPETRARVVVRTYPLTQKIEVTIPT 58 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNK 87 G+L +HED+Y AI+ I+KLE Q+ + Sbjct: 59 KVGILRTEVEHEDLYAAIDLAIDKLEDQVRR 89 >UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA Length = 191 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 54/93 (58%), Gaps = 7/93 (7%) Query: 5 ITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS------KEPQGFVADATINTPN 58 ++ + +E+T +R++V ++L++L+++ + + + L+ E + V + +N P Sbjct: 6 LSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRV-EVQLNVPG 64 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 G++ A H DMY AI++ + LERQL K + + Sbjct: 65 GIIRAEEHHADMYAAIDKASDVLERQLRKFKTR 97 >UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Proteobacteria RepID=Q122P6_POLSJ Length = 109 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 54/96 (56%), Gaps = 5/96 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS-----KEPQGFVADATIN 55 M + I+ +E+TPA+R +V +L ++ + +++ ++L+ ++ + A+ ++ Sbjct: 1 MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 L A H D+Y A++EL +KL+RQ+ + + K Sbjct: 61 VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTK 96 >UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGY6_9BACT Length = 177 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 51/85 (60%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT++ +E+T AIR + +++KLEK+ ++ + +++L + + + ++ Sbjct: 1 MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60 Query: 61 LVASGKHEDMYTAINELINKLERQL 85 + K ED+Y +I+ ++K+E+QL Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85 >UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1DDE8_MYXXD Length = 221 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 51/91 (56%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M NIT +Q + +++++ +++ ++ + H++LS E AD TI++ V Sbjct: 1 MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 L K +DMY +I+ ++K+ERQL + + K Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDK 91 >UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1 Length = 207 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 4/94 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF--VADATINTPN 58 M ++T +Q E T A++++ DR+ +++K+ I+ H+++S E +G+ D T+ N Sbjct: 1 MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTE-RGYKHRVDVTMQLHN 59 Query: 59 GVLVASGK-HEDMYTAINELINKLERQLNKLQHK 91 G+ VA + E M+++I+ + K+ERQ+ + + K Sbjct: 60 GLTVAGRETSESMHSSIDLVTAKIERQVRRYKDK 93 >UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=bacterium Ellin514 RepID=B9XGM0_9BACT Length = 117 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATIN 55 M + +T+ + +T AI H+ R+ KLE + IN + L + + F + Sbjct: 1 MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 P L A DMY AI+ + K+E+Q+ K Q K +AR+ + + +E E Sbjct: 61 VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKARKHTVASRTKRSRQEAE 116 >UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Anaeromyxobacter RepID=A7HIE3_ANADF Length = 185 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NIT + +E T A++ HV R+ ++++ H +L E A+ T+ + Sbjct: 1 MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 L + + DMY +I++ +K+ERQL K + K Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEK 91 >UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6 Tax=Proteobacteria RepID=Q0ADR1_NITEC Length = 111 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+T + ITPA+R +V ++ + + +++ ++ LS + A+AT++ P Sbjct: 1 MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKG-EARRAATSVKDANF 106 + DMY +I+ L +KL RQ+ K + K R +KD F Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEKNIRQRNDQGGLKDQEF 107 >UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae RepID=Q5SIS0_THET8 Length = 186 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 8/97 (8%) Query: 3 MNI---TSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-----ADATI 54 MNI + +EIT AIR +V +LA+L+++Q + ++LS V A+ + Sbjct: 1 MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 + P G++ + D+Y AI+ +++LE Q+ + + + Sbjct: 61 DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRER 97 >UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT Length = 200 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 9/111 (8%) Query: 10 MEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV-LVASGKHE 68 ME + A+R + DRLAK++++ + + + S E +A + NG+ L +S K E Sbjct: 1 MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLRNGLQLHSSEKTE 60 Query: 69 DMYTAINELINKLERQLNKLQ--------HKGEARRAATSVKDANFVEEVE 111 MY++I+ + K+ERQ+ + + HKG+A R V + EE E Sbjct: 61 SMYSSIDMALAKMERQVRRYKDRITNHKPHKGKAARVRQVVFSLDGQEEPE 111 >UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli RepID=Q71WR7_LISMF Length = 187 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 5/99 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW--QTHLINPHIILS-KEPQGFVADATINTP 57 + NI + +E+T IR +V ++ KLE++ +T N H+ L + + TI P Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNAKVEVTIPLP 61 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 N VL A D+Y +I+ +++KLERQ+ K HK + R Sbjct: 62 NLVLRAEETSGDLYASIDLIVDKLERQIRK--HKTKVNR 98 >UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR29_ACIBL Length = 198 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +Q ITPA+R+ V L KL K +ILS E +A+ TI Sbjct: 1 MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 LV G+ DM TAI E + +E+Q L+H R Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQA--LKHNNRRR 93 >UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae RepID=B0U6N0_XYLFM Length = 105 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +Q+E+TPA+R++V +L +L++ +H LS ATIN P Sbjct: 1 MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 L A+ MY AI+ + +KL+R + L+HK Sbjct: 61 LNANASASTMYAAIDLVADKLDRLI--LKHK 89 >UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae RepID=C8P3U4_ERYRH Length = 180 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 4/98 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW--QTHLINPHIILSKEPQGFVADATINTPN 58 M + I K +EIT A+++ V ++L L K+ +++++ PQG + TI + Sbjct: 1 MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 G L A HED Y A++ +++KLE Q+ + HK + R Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRR--HKTKISR 96 >UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10 Tax=Clostridiales RepID=Q0B0B5_SYNWW Length = 181 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M I + +EIT A++ + RL+KLEK+ + + LS E + + TI + Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L +DMY++I+ + KLE+Q+ K + + +K A EE+++E Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRLYRSNRGAGLKKA-LAEEIKKE 112 >UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae RepID=C6M3U2_NEISI Length = 104 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT ++T AI+ +V+++L ++ + + I+ I LS E A+A I+ Sbjct: 1 MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L +DMY AI+ L++KL+R + L+HK ++ +VK A Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAV--LKHKEKSGDVRNTVKPA 102 >UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes RepID=D2BPB3_LACLK Length = 185 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 9/95 (9%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW------QTHLINPHIILSKEPQGFVADATI 54 + NI + +E+T AIR +V D++ KL+K+ T +N + K + + T+ Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAK---VEVTL 58 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 N L A +DMY++I+ + KLERQ+ K + Sbjct: 59 PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYK 93 >UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Nautiliaceae RepID=B9L9D3_NAUPA Length = 166 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-ADATINTPN- 58 M + I + +E+T A++ H++ ++++EK+ +++ + + K+ + F + +N P+ Sbjct: 1 MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 G V K +DMY A+++ +KLE+ L + K R +++ VEE ++E Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDYRKKDRIEEL-IVEEEQDE 114 >UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ Length = 192 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINP--HI-ILSKEPQGFVADATINTPNG 59 I + IT AIR ++ D++ KLE++ + N H+ + + + + TI N Sbjct: 4 FEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKNV 63 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L A +H+D+Y I+ + +KLERQ+ K + + R+ T + FV EV+E Sbjct: 64 TLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVN-RKHKTHGEPEAFVAEVQE 115 >UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales RepID=RP5M_BRAJA Length = 203 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+ I+ K + + A+R V+DR + L K+ + HI LSK+ GF D ++ +G Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 + L A D Y + ++ + +E++L + + + + R A Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDRSA 99 >UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYI7_METI4 Length = 115 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-------QGFVADAT 53 M + I+S +++T A+ H+ + KL + +++ + + EP Q F A Sbjct: 1 MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60 Query: 54 INTPNGVLVASGKHEDMYTAINELINKLERQLNK 87 + P +VA + D+Y A++ ++++L RQL K Sbjct: 61 LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRK 94 >UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM Length = 112 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 52/91 (57%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + ++ + +I++ V L ++ + + H+IL K + +A+AT++ Sbjct: 1 MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 + A +++Y A++ L +K++RQL+K+ K Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQK 91 >UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT Length = 177 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW--QTHLINPHIILSKEPQGFVADATINTPN 58 M ++K + +PAI +++ R K+++ + +++ I K+ +V A IN Sbjct: 1 MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQ 89 ++V K D+YTAI+ L + LE+++ K++ Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIK 91 >UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11 Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB Length = 182 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 56/103 (54%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +T + ME + A++ + ++L +++K+ I + L+ E +A+ TI Sbjct: 1 MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + A+ + DMY +I+ + +K+ERQL + + + +A + A ++ Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARE 103 >UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM Length = 209 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + + SK ++++ A+R+ + R+ + K+ ++ +S+E GF + +++ P+G Sbjct: 1 MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60 Query: 60 VLV-ASGKHEDMYTAINELINKLERQLNKLQHK 91 V++ A G+ +D Y A + +LE++L + + K Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRK 93 >UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14ME0_SPICI Length = 125 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 5/100 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW----QTHLINPHIILSKEPQGFVADA-TIN 55 M I SK + IT A+ QH+ D KL K+ + L++ I +KE + A I Sbjct: 1 MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTAIDIR 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 N L A ++ D Y A+++ + K+E QL K++ K E R Sbjct: 61 GRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDR 100 >UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N462_9BACT Length = 114 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M +++T +Q EITP+IR++V R+ A +E + +++ + F +N Sbjct: 1 MKISVTGRQFEITPSIREYVESRIQALVEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYH 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 V+ A + D+Y + + + K++ QL ++ K + +A Sbjct: 61 VVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSHQA 98 >UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46 Tax=Bacteria RepID=Q28VX1_JANSC Length = 235 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M I+ KQ+EI A++ HV D L + +K+ + ++ SK F + T++ G Sbjct: 45 MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104 Query: 60 VLVASGKH-EDMYTAINELINKLERQLNKLQHK 91 + ++ H ++Y A +KLE+QL + + + Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRR 137 >UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium RepID=C9XIR4_CLODC Length = 183 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG- 59 M + I+ KQ+E+T AI+ + +L+KL+ + + + +S + TI T NG Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHK 91 ++ A E++YTAI+ + +KL +QL K + + Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKR 92 >UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4 Tax=Acidithiobacillus RepID=RP5M_THIFE Length = 78 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ---GFVADATINTP 57 M + IT + +++T +I+ + +++ +L ++ H+ N ++L P V D T+N P Sbjct: 1 MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60 Query: 58 NGVLVASGKHEDMYTAIN 75 V A DMYT I+ Sbjct: 61 GHVFHAEVHDADMYTGID 78 >UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ Length = 178 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEK--WQTHLINPHIILSKEPQG-FVADATINTP 57 M IT K +EI+ AI+ ++ RL K+++ + L++ ++ + K+ + +V +N Sbjct: 1 MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 ++ +H D+YTAI+ + LE+Q+ +L+ + Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKER 94 >UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia RepID=C6V4K5_NEORI Length = 186 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 6/101 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADR-LAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + ++ ++ ++ +++ DR L ++K T + LSKE + F D +N+P Sbjct: 1 MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60 Query: 60 VLVASGKHEDMYTAIN----ELINKLERQLNKL-QHKGEAR 95 ++ ASG+ D Y A + +++ KL R ++L +HK EA+ Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEHKSEAK 101 >UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms RepID=RP5M_RALEH Length = 116 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS------KEPQGFVADATI 54 M I+ ++ITP +R++V +L ++ + +I ++LS K+ + + A+ + Sbjct: 1 MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQY-AEINL 59 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQL 85 + + HED+Y AI+ L++KL+RQ+ Sbjct: 60 HLKGKDIFVEAHHEDLYAAIDALVDKLDRQV 90 >UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVF2_9PROT Length = 107 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/101 (23%), Positives = 53/101 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + +EIT A+ + ++ K+ + ++ + IL E +A+ ++ + Sbjct: 1 MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + + DMY I++LI+K++RQ+ K++ K + + V Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDHHQSEGV 101 >UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12 Tax=Firmicutes RepID=Q2RLX7_MOOTA Length = 190 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 48/91 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I K + +T A+RQ++A RL K+E++ + + L+ V + TI + Sbjct: 16 MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 L DMY +++ ++ KLE+Q+ K + + Sbjct: 76 LRGEEATGDMYGSVDLVVEKLEKQIAKYKTR 106 >UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PW5_SOLUE Length = 181 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW---QTHLINPHIILSKEPQGFVADATINTP 57 M + T +Q+E+ PA + + R AK+ + H+ILS E A+ATIN Sbjct: 1 MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNK 87 N LV G D++ AI+ KLE+Q K Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLK 90 >UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR Length = 256 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M NI K + IT +R+H+A+++ ++ +I+ +II + TI V Sbjct: 1 MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKG--EARRAATS 100 K +D+Y AI+ + K+ER++ K + + +++RA Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKERNIDKSQRAVVD 102 >UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A8RDK2_9FIRM Length = 177 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M +NI K + +TPA+ + + +L LEK+ +I+ ++ + P + TI T Sbjct: 1 MKVNIYGKNITVTPALSEKIEKKLNHLEKY--FMIDDSVVANVVVRVYPNKQKIEVTIPT 58 Query: 57 PNGVLVASGKHEDMYTAINELINKLE----RQLNKLQHKGEARRAATSVKDANFVEEVEE 112 VL H+D+Y AI+ I+KLE RQ +L K + + A +++ +F + E+ Sbjct: 59 KYAVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTRKNKEKLAYAFIEEMDFEDSYED 118 >UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y948_COPPD Length = 190 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/95 (21%), Positives = 54/95 (56%), Gaps = 4/95 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG----FVADATINT 56 + +++ K +E+T AI+Q++ +++ ++ ++ ++ +++ KE Q F + T++ Sbjct: 7 VKIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDA 66 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 ++ A + D+Y AI++ +KLE + + + K Sbjct: 67 NGRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEK 101 >UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH Length = 122 Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-QGFVADATINTPNG 59 M++ IT++ E+ + Q + + K +K++ + + + EP F+ + + G Sbjct: 1 MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + + G+ ++ A NE ++L+RQL K + K A R+ K+ Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAHRSEKCEKE 104 >UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRA6_9PROT Length = 197 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + IT + +++ A++ HV + L A +EK+ + KE G + T++ +G Sbjct: 1 MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60 Query: 60 VLVAS-GKHEDMYTAINELINKLE 82 V +AS GK +D Y A + + KLE Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLE 84 >UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33 Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN Length = 122 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ +++T +I++H+ ++ AK+ LI+ II+SKE F + + N Sbjct: 1 MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60 Query: 61 LVASGKHEDMYTAINELINKLERQL 85 + A G MY AI KLE L Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVL 85 >UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5 Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5 Length = 196 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+ ++ K + + A+R V +R + L K+ + HI LSK+ GF D ++ +G Sbjct: 1 MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + L A D Y + ++ + ++E++L + + K + R A S Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDRSARKS 102 >UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA Length = 172 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 17/105 (16%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-------QGFVADATIN 55 + IT + ME + A+ +H+ D KLE++ ++ H+++ +EP + F ++ Sbjct: 66 LQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVV-EEPHRHKQHGRHFHVRVDVS 124 Query: 56 TPNGVLVAS------GKHEDMYTAINELINKLERQLNKLQHKGEA 94 P +VAS HED Y A+ E + RQ LQH +A Sbjct: 125 VPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQ---LQHYADA 166 >UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCZ2_9FIRM Length = 180 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MT+ + K +E+TPA++ +V ++ + K + ++ E + + T+ V Sbjct: 1 MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L A E+MY +I+ + K+ERQ++K + + +R + +DA Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTR-LMKRKYNNFRDA 103 >UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSN7_9PROT Length = 202 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M +++ KQ+++ +RQ + + + K+ + I + LS++ F AD ++ G Sbjct: 10 MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69 Query: 60 VLV-ASGKHEDMYTAINELINKLERQLNKLQHK 91 + V A G+++D Y A ++E+QL + + + Sbjct: 70 ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRR 102 >UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT Length = 178 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW--QTHLINPHIILSKEPQGFVADATINTPN 58 M NI +K + +T +++H+ +LAK+ + + H + + + KE + + T + P Sbjct: 1 MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 V+ + +D Y + + N LER++ + + + R A++ + + EV +E Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMRHRASAKEILEAIPEVPDE 115 >UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134 Tax=Bacteria RepID=B8CYM6_HALOH Length = 184 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW-QTHLINPHIILSKEPQGFVADATINTPNG 59 M + K +++TPA++++ ++++KL K+ HI + E + + T Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHK 91 +L + +DMY +I+ ++ KLERQ++K + K Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTK 92 >UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSN2_SYNAS Length = 209 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++T + E Q+V DR+ +L K+ + H++L+ E VA+ ++ T Sbjct: 31 MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 L+ + +DM+ AI+ + K+ERQL K + K Sbjct: 91 LIGKEESKDMHLAIDNAVEKIERQLKKHKEK 121 >UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BX30_HYPNA Length = 198 Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + IT + ME+ A+R + + L A + K+ + + ++ +S++ D ++ P+G Sbjct: 1 MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60 Query: 60 -VLVASGKHEDMYTAINELINKLERQLNKLQHK 91 VL +SGK D Y A+ + K+E+++ + + + Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRR 93 >UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium RepID=A9W5P1_METEP Length = 202 Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 6/95 (6%) Query: 3 MNITSKQMEITPAIRQHVADRLAK-----LEKWQTHLINPHIILSKEPQGFVADATINTP 57 + +T +++ A+R V DR+A L+ + H+ L ++ + D ++ Sbjct: 4 LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63 Query: 58 NGV-LVASGKHEDMYTAINELINKLERQLNKLQHK 91 G+ L ASG D++ + + +KLE++L + +HK Sbjct: 64 TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHK 98 >UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium RepID=C3WBJ3_FUSMR Length = 183 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS----KEPQGFVADATINT 56 M M I KQ+ IT AI+ + +L ++EK+ +I I LS K A+ Sbjct: 1 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + AS D+Y AI+ + + LE QL K HK + R A S Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKK--HKDKIRTAVQS 102 >UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms RepID=A1SY46_PSYIN Length = 189 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 12/98 (12%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSK----EPQG--FVADATINT 56 + IT + M + A+ H+ +++AKL+++ H++ H+++ + QG F + Sbjct: 5 LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64 Query: 57 PNGVLVASGK------HEDMYTAINELINKLERQLNKL 88 P+G L+ + HED Y AI + + RQ+ Sbjct: 65 PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDF 102 >UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEK7_9RHIZ Length = 198 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+ IT K ++ A + + +D++ L K+ + + H+ L +E F ++ +G Sbjct: 1 MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60 Query: 60 VLV-ASGKHEDMYTAINELINKLERQLNKLQHK 91 +L+ A G+ +D YT+++ ++LE ++ + + + Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSR 93 >UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium RepID=C9XLM7_CLODC Length = 187 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG- 59 M + ++ +QM++T I+ +V +L++LEK+ + +S + + TI NG Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHK 91 ++ A +D+Y AI+ + +KL RQ+ K + K Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTK 92 >UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3 Tax=Psychrobacter RepID=A5WCB7_PSYWF Length = 132 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 10/99 (10%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----------PQGFVA 50 M ++IT + IT A++ V D+L+K+E+ + + +ILS + A Sbjct: 1 MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 +A + + +DMY AI+E+ +KL+RQ+ K + Sbjct: 61 EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYK 99 >UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I442_9CLOT Length = 178 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++ +K TPA+++ + +L+K++++ + LS + + TI + Sbjct: 1 MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 L A EDMY +I+ ++ KLERQ+ K Q +RR S++ Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRK-QRTKLSRRNNESLR 101 >UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group RepID=Q9ZD30_RICPR Length = 143 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 54/95 (56%), Gaps = 4/95 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M ++++ + + I ++++ +++ + ++K+ T +IN I SKE F D + +G Sbjct: 1 MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 ---VLVASGKHEDMYTAINELINKLERQLNKLQHK 91 ++ ++ D+Y A ++ ++KLE+QL K + K Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSK 95 >UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia sp. EuI1c RepID=D1V7P2_9ACTO Length = 283 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADA------TI 54 M + + + + R HV +LAKLE++ +I + LS+EP +AD T+ Sbjct: 1 MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 T V+ A D Y+A++ KL +L + + Sbjct: 61 YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASER 97 >UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MPR7_9FIRM Length = 211 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+NIT+K++++T A + ++ AKL+++ + + + LS++ + T+ T Sbjct: 38 MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + + K D A + I+++ RQ+ K +K + S +F + VEE+ Sbjct: 98 IFRSEQKAADKNDAFDACIDRIIRQIRK--NKTRVEKQLHSSFKGSFDDVVEEQ 149 >UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Leptospirillum RepID=A3EWH8_9BACT Length = 176 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T + MEIT AIR V +++ L++ +IL E + T++ NG Sbjct: 1 MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHA-NGR 59 Query: 61 LV-ASGKHEDMYTAINELINKLERQLNKLQHK 91 L+ A D+Y +++ ++KLERQL + + K Sbjct: 60 LIHAESVTNDLYASLDLAVDKLERQLVRFKEK 91 >UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12 Tax=Clostridia RepID=B0K3A9_THEPX Length = 181 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 3 MNIT---SKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MNIT M +T +R V ++KL K+ +LS + +A+ TI Sbjct: 1 MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANF 106 + A +DMY +I+ +++K+E+Q+ L+HK + + S + F Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQI--LKHKAKLKNRFGSNESIRF 105 >UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales RepID=RAFY_STRP6 Length = 182 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW--QTHLINPHIILS--KEPQGFVADATINT 56 + +I + +E+T AIR +V +L K+EK+ + I+ + L +E V + TI Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKV-EVTIPL 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNK 87 + L A +DMY +I+ +++K+ERQ+ K Sbjct: 61 DSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91 >UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21 Tax=Betaproteobacteria RepID=A9BRS9_DELAS Length = 119 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 15/117 (12%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHL---INPHIILS------KEPQGFVAD 51 M + I+ +E+TP++R +V +AKLE+ H ++ ++L+ KE + A Sbjct: 1 MNLTISGHHLEVTPSLRSYV---MAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQR-AG 56 Query: 52 ATINTPNGVLVASGKHEDMYTAINELINKLERQL--NKLQHKGEARRAATSVKDANF 106 T+ L H D+Y A++ L +KL+R + K + +G +A + DA Sbjct: 57 CTLRVKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQGSRYGSAKRLDDAGL 113 >UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia RepID=C4K0H4_RICPU Length = 192 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M ++++ + + I ++++ +R ++ +K+ T +IN I SKE F D + +G Sbjct: 1 MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 ---VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 ++ ++ D+Y A ++ ++KLE+QL K + K + A Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNHHAG 102 >UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae RepID=B4RCJ5_PHEZH Length = 222 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + +T K +++ A+R VAD L A +EK+ +++S+E F D + +G Sbjct: 13 MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72 Query: 60 -VLVASGKHEDMYTAINELINKLERQLNKLQHK 91 L G D + A + + K+++++ + + + Sbjct: 73 QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRR 105 >UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE Length = 191 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 10/99 (10%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINP---HIILSKE-----PQGFVADA 52 M++ +T ++M +T A+R++ +++ K I+P I+L E P+ V + Sbjct: 1 MSITVTGRKMPVTDALREYAEEKIGNSMKVMD--IDPLVAEIVLFVEKNPANPRPAVCEV 58 Query: 53 TINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 T+ T ++ EDMY AI+ K+ RQL K + K Sbjct: 59 TLRTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTK 97 >UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna RepID=B0S0M8_FINM2 Length = 179 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N +K +++T ++Q +L KL+K+ ++ KE + T+ GV Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60 Query: 61 LV-ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 ++ A +ED+ TAI+++ + L RQ+ K HK + ++ T F E VEE Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRK--HKTKLQKRFTESNSIRF-EAVEE 110 >UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8 Tax=Chlorobiaceae RepID=B4S5H7_PROA2 Length = 110 Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 16 IRQHVADRLAKLEKWQTHLINPHIILSKEPQGF----VADATINTPNGVLVASGKHEDMY 71 I Q+ D + L+K + +IN H+IL + + +A+ T++ P VLVA Sbjct: 26 IEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVPQQVLVAKEAGATYE 85 Query: 72 TAINELINKLERQLNKLQHKGEARR 96 AI+ ++ + RQL K + K +A + Sbjct: 86 QAIDSCVDIVGRQLKKYKEKLQAHK 110 >UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO Length = 284 Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 56/103 (54%), Gaps = 11/103 (10%) Query: 5 ITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILS--------KEPQGFV--ADAT 53 + + +EIT +IR++ +++ K + + H + + K P G + + T Sbjct: 84 VQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKTEVT 143 Query: 54 INTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 + T NG++ + + +D+Y +I+ + +KLER+L K++ K ++R Sbjct: 144 VYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEKKISKR 186 >UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria RepID=B8GU63_THISH Length = 192 Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 12/105 (11%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS----KEPQGFVADATIN--T 56 + +T + M+ +PA+ V ++ KL ++ H++ +++ +G + I+ Sbjct: 9 VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68 Query: 57 PNGVLVASGK------HEDMYTAINELINKLERQLNKLQHKGEAR 95 PNG LVAS + HED+Y A+ + + + RQL K R Sbjct: 69 PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGR 113 >UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIZ4_ACIFE Length = 181 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + K +E+T A++ +V R+ + K + ++ E + T+ V Sbjct: 1 MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L A ++MY +I++ + K+ERQ++K + + +R ++ KDA Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTR-LMKRKYSNFKDA 103 >UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29 Tax=Actinomycetales RepID=C7MXY7_SACVD Length = 226 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVA------DATI 54 M + I + +E+ R HVA ++A+LE++ +I+ + L EP A + T Sbjct: 1 MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLE 82 V+ A + D YTA++ I KLE Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88 >UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes RepID=Y1964_STAS1 Length = 190 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINP--HI-ILSKEPQGFVADATINTP 57 + I + + IT AIR ++ +++ KLE++ + N H+ + + + + TI Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLK 61 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 L A +++D+Y I+ + NKLERQ+ K + Sbjct: 62 KVTLRAEERNDDLYAGIDLINNKLERQVRKYK 93 >UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0T2_SALRD Length = 132 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 5 ITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE---PQGFVADATINTPNGVL 61 +T++ ++++ + ++ DR AKLE++ + H+IL K+ + A I+ L Sbjct: 33 VTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQKRL 92 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHK 91 A AIN ++ L RQL K + K Sbjct: 93 SAEDAASSHEEAINLCVDHLRRQLEKYKAK 122 >UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO Length = 199 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 56/97 (57%), Gaps = 6/97 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK---LEKWQTHLINPHII-LSKEPQGFVADAT--I 54 M + +K++E+T A+ ++ R++K L K +++P + ++KE + + T I Sbjct: 1 MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 N + ++ + D+Y AI+E+ + LER++ KL+++ Sbjct: 61 NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNR 97 >UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0Q0_9FIRM Length = 176 Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 49/95 (51%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI++K + +++ + + +KL+K+ I++ K G+ +A + + Sbjct: 1 MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + ED Y A++ + KL RQ++K + K +A+ Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLKAK 95 >UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04A0 Length = 177 Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++ ++ E+T + + + +++LEK+ + ++ E Q + IN V Sbjct: 1 MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK--GEARRAATSVKDANFVEEV 110 L A + E+MY +++++ LERQ+ + ++K + R+A + F++EV Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLRTKHRQAEQHIFTPAFMDEV 112 >UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD Length = 179 Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+ +K +T IR + +L+K+ + +KE FV + T NG Sbjct: 1 MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60 Query: 61 LVASGKHEDMY-TAINELINKLERQLNKLQHK-GEARRAATSVK 102 ++ S ++ Y TAI+ I+ L RQ+ K + K R+ S+K Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKLMRGRQKGESIK 104 >UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VDW4_9CLOT Length = 170 Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 44/84 (52%) Query: 8 KQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKH 67 K +++T ++ V D+L+KLEK+ + S E + TI ++ A Sbjct: 3 KIIDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVS 62 Query: 68 EDMYTAINELINKLERQLNKLQHK 91 +DMY +I+ ++ +ERQ+N+ + K Sbjct: 63 DDMYVSIDLVLEVIERQVNRHKKK 86 >UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS Length = 211 Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + + KQ+++ A+R HV D ++ L K+ + ++ +++S++ F AD ++ G Sbjct: 1 MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60 Query: 60 VLVAS-GKHEDMYTAINELINKL 81 +L+ S G+ + Y A ++ K+ Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKV 83 >UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MED7_PARUW Length = 211 Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 50/89 (56%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLV 62 + IT + +EIT +++ + ++++K+E++ +I+ ++I+ + + + + + Sbjct: 17 VKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKIQ 76 Query: 63 ASGKHEDMYTAINELINKLERQLNKLQHK 91 + DMY +I++ I +LE Q+ + + K Sbjct: 77 SQAATPDMYASIDKAIARLEAQIRRYKSK 105 >UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QBC3_CATAD Length = 237 Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 7/111 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP------QGFVADATI 54 M + + S+ E+T R+HV ++LAK+E+ I+ ++L +E Q + T+ Sbjct: 1 MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60 Query: 55 NTPNG-VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 + P V+ A D Y+A++ KL+ QL +++ + + R ++ D+ Sbjct: 61 DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIHRNRKAIADS 111 >UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L9_ACIC5 Length = 225 Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 43/91 (47%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + T + + + A R + L ++ K +++ H++LS E +A+ TI Sbjct: 1 MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 LV++ + M TA+ + K E Q + + K Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQK 91 >UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Betaproteobacteria RepID=Q3SIX5_THIDA Length = 189 Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 10/115 (8%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIIL----SKEPQG--FVADATINT 56 + IT + +E + A+ H+ ++ KLE + +++ ++L + QG F I Sbjct: 5 LQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRIDIGV 64 Query: 57 PNG-VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 P ++V HED+Y A+ + + RQL+ + R T D F+ EV Sbjct: 65 PGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRR---LRRETKTHDREFIGEV 116 >UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXY8_9BACT Length = 119 Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS-KEPQGFVADATINTPNG-V 60 + I ++ ++IT AIR + + K++K+ +++ + L + + +N G Sbjct: 4 ITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGPT 63 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGE 93 +VA + DMY +I+ +++K+ QL K HKG+ Sbjct: 64 IVAEASNTDMYRSIDIVVDKVVAQLKK--HKGK 94 >UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2 Tax=Alteromonadales RepID=Q21ND3_SACD2 Length = 118 Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 39/86 (45%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N++ +E+T AIR ++ K+ HL + + L+ E +AT Sbjct: 1 MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLN 86 L D+Y AI + + KLE L+ Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALS 86 >UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA Length = 212 Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust. Identities = 20/93 (21%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLV 62 + +T + + +T A++ + ++++K+++ +I+ I + + D + + + Sbjct: 17 ITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKIK 76 Query: 63 ASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + +DMY +I++ ++KLERQL L++K R Sbjct: 77 SHAVCDDMYVSIDKAVDKLERQL--LKYKSRIR 107 >UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ65_DESAH Length = 179 Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 6/111 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++T KQ++ + A++ +V ++ + +K +++LS E +A+ T+ Sbjct: 1 MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT----SVKDANFV 107 + A + E+MY++I+ L++K+ Q+ K +K + RR + S+KD + + Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKK--NKDKMRRHMSGNKASIKDNDIL 109 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap... 149 2e-35 UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr... 130 1e-29 UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C... 127 1e-28 UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari... 126 2e-28 UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot... 124 6e-28 UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot... 124 7e-28 UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D... 124 1e-27 UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P... 123 1e-27 UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot... 122 2e-27 UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be... 122 3e-27 UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=... 121 5e-27 UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst... 121 6e-27 UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot... 120 1e-26 UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits... 120 2e-26 UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot... 119 2e-26 UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm... 118 5e-26 UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot... 118 5e-26 UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3... 117 8e-26 UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3... 117 9e-26 UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot... 117 1e-25 UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3... 117 2e-25 UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ... 116 2e-25 UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo... 116 2e-25 UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation... 114 7e-25 UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac... 113 1e-24 UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ... 113 1e-24 UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c... 113 2e-24 UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo... 112 2e-24 UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro... 112 3e-24 UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ... 111 6e-24 UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio... 111 8e-24 UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3... 110 2e-23 UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ... 110 2e-23 UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3... 109 2e-23 UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis... 109 3e-23 UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob... 108 6e-23 UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot... 108 7e-23 UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot... 108 7e-23 UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3... 107 1e-22 UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil... 107 1e-22 UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein... 106 2e-22 UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad... 106 3e-22 UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr... 106 3e-22 UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe... 105 5e-22 UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys... 105 6e-22 UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot... 104 6e-22 UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3... 104 7e-22 UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami... 104 8e-22 UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3... 104 1e-21 UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther... 104 1e-21 UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes... 103 2e-21 UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3... 103 2e-21 UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri... 102 3e-21 UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot... 102 5e-21 UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium... 101 5e-21 UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta... 101 6e-21 UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax... 101 1e-20 UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu... 100 2e-20 UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R... 100 2e-20 UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3... 99 4e-20 UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3... 98 7e-20 UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick... 98 8e-20 UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3... 97 1e-19 UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3... 97 1e-19 UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A... 95 5e-19 UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)... 95 6e-19 UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation... 95 7e-19 UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3... 93 2e-18 UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3... 93 3e-18 UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R... 93 4e-18 UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3... 92 6e-18 UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr... 91 1e-17 UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation... 91 1e-17 UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3... 90 2e-17 UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor... 88 8e-17 UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa... 88 1e-16 UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M... 87 2e-16 UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3... 86 4e-16 UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation... 86 4e-16 UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA 76 3e-13 UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl... 76 4e-13 Sequences not found previously or not previously below threshold: UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3... 118 7e-26 UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid... 114 1e-24 UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost... 112 3e-24 UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3... 110 2e-23 UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3... 107 8e-23 UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3... 107 1e-22 UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo... 107 1e-22 UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil... 104 8e-22 UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot... 103 1e-21 UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida... 102 2e-21 UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria... 102 3e-21 UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ... 101 1e-20 UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 101 1e-20 UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_... 99 3e-20 UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic... 99 5e-20 UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict... 98 8e-20 UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo... 98 1e-19 UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3... 96 2e-19 UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P... 96 3e-19 UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri... 96 3e-19 UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3... 96 4e-19 UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl... 96 5e-19 UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri... 94 1e-18 UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul... 94 2e-18 UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG... 93 3e-18 UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3... 91 1e-17 UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax... 91 1e-17 UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot... 91 1e-17 UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation... 90 2e-17 UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3... 89 3e-17 UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3... 89 5e-17 UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3... 88 8e-17 UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter... 88 1e-16 UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation... 87 2e-16 UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S3... 87 2e-16 UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero... 86 3e-16 UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium... 86 3e-16 UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro... 86 3e-16 UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3... 86 5e-16 UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg... 86 5e-16 UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3... 85 7e-16 UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth... 84 1e-15 UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi... 84 1e-15 UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia... 84 1e-15 UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=R... 84 1e-15 UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e... 83 2e-15 UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3... 83 2e-15 UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens ... 83 2e-15 UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida... 83 3e-15 UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri... 83 3e-15 UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne... 83 3e-15 UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom... 83 4e-15 UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S3... 82 6e-15 UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae... 82 7e-15 UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2... 81 9e-15 UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid... 81 1e-14 UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3... 80 2e-14 UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3... 80 2e-14 UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin... 79 4e-14 UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=... 79 5e-14 UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S3... 79 6e-14 UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3... 78 7e-14 UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea s... 78 8e-14 UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chl... 78 8e-14 UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3... 78 1e-13 UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3... 78 1e-13 UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3... 78 1e-13 UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3... 78 1e-13 UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=... 77 2e-13 UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell... 77 2e-13 UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3... 77 2e-13 UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr... 76 3e-13 UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacte... 76 3e-13 UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot... 76 3e-13 UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=... 76 3e-13 UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y... 76 4e-13 UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p... 76 4e-13 UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Ther... 75 6e-13 UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw... 74 1e-12 UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri... 74 2e-12 UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re... 74 2e-12 UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3... 73 2e-12 UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S3... 73 2e-12 UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3... 73 3e-12 UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba... 73 3e-12 UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=... 73 3e-12 UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S3... 73 4e-12 UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t... 72 5e-12 UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p... 72 6e-12 UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3... 72 6e-12 UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Gro... 72 6e-12 UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter... 72 7e-12 UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1... 71 1e-11 UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation... 71 1e-11 UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Camp... 71 1e-11 UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr... 70 2e-11 UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=... 70 2e-11 UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=... 70 2e-11 UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S3... 70 3e-11 UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Acti... 69 4e-11 UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal prote... 69 4e-11 UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1... 69 4e-11 UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostri... 69 5e-11 UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali... 68 7e-11 UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S3... 68 8e-11 UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex... 67 2e-10 UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re... 66 2e-10 UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S3... 66 3e-10 UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M6... 66 3e-10 UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Prop... 66 4e-10 UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr... 66 4e-10 UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S3... 66 5e-10 UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac... 66 5e-10 UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost... 65 6e-10 UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act... 65 6e-10 UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal pro... 65 7e-10 UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3... 65 7e-10 UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation ... 65 8e-10 UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorob... 65 8e-10 UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella bu... 65 9e-10 UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S3... 64 1e-09 UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kyto... 64 1e-09 UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil... 64 1e-09 UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S3... 64 1e-09 UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal prot... 64 2e-09 UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Or... 63 2e-09 UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce... 62 4e-09 UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Ro... 62 4e-09 UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation... 62 5e-09 UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verr... 62 5e-09 UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia muc... 62 5e-09 UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magneto... 62 6e-09 UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydroge... 62 8e-09 UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip... 61 9e-09 UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact... 61 1e-08 UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Bla... 61 1e-08 UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azo... 61 1e-08 UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S3... 61 2e-08 UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr... 61 2e-08 UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3... 61 2e-08 UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplas... 60 3e-08 UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev... 59 3e-08 UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia p... 59 4e-08 UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax... 59 4e-08 UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhiz... 59 5e-08 UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Act... 59 5e-08 UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S3... 59 6e-08 UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3... 59 6e-08 UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal... 58 8e-08 UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p... 58 9e-08 UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact... 58 9e-08 UniRef50_A2TTF7 Site-specific recombinase, phage integrase famil... 57 1e-07 UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=... 57 1e-07 UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chi... 57 1e-07 UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ... 57 1e-07 UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro... 57 1e-07 UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 T... 57 1e-07 UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho... 57 2e-07 UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S3... 57 2e-07 UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum ... 57 2e-07 UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntroph... 56 3e-07 UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lu... 56 4e-07 UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S3... 55 7e-07 UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavob... 54 1e-06 UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisp... 54 1e-06 UniRef50_A3U9H3 Site-specific recombinase, phage integrase famil... 54 1e-06 UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Ac... 54 1e-06 UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cyst... 54 2e-06 >UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria RepID=RAIA_ECO57 Length = 113 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV Sbjct: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 >UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria RepID=RAIA_HAEIN Length = 107 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 67/104 (64%), Positives = 83/104 (79%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MT+NITSKQM+ITPAIR+H+ +RLAKL KWQT LI+PH +L+K P GF +A+I TP G Sbjct: 1 MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L+AS +DMY AINE+ KLERQLNKLQHK E+RRA +KD+ Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESRRADERLKDS 104 >UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales RepID=Q97F93_CLOAB Length = 174 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 63/113 (55%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ++ K +E+T +R+ V +++KLEK+ + H+ LS E + + TI + Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L + DMY +I+ + +KLERQ+ K + K E R+ + S+K N + +EE Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERRKYSDSLKFQNIPDYHKEE 113 >UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWV9_9PROT Length = 212 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++IT + +E+T ++ +V D+L L+ H+++ H++LS E + ++ Sbjct: 26 MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-----RAATSVKDANFVEEVEEE 113 + S + EDMY +I+ +I+K+ RQL + + K R +K ++ V +V E Sbjct: 86 IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRHQGGGQREGRQIKVSHRVLDVAAE 143 >UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6 Tax=Proteobacteria RepID=Q0ADR1_NITEC Length = 111 Score = 124 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+T + ITPA+R +V ++ + + +++ ++ LS + A+AT++ P Sbjct: 1 MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKG-EARRAATSVKDANFVEEV 110 + DMY +I+ L +KL RQ+ K + K R +KD F + Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEKNIRQRNDQGGLKDQEFEQPE 111 >UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM Length = 180 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 60/103 (58%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+T + +E + +R + +++++++K+ ++ H++L E +A+ TI+ Sbjct: 1 MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + + + +DMY+AI++L + LE Q+ K + K R+ T KD Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRRKPVTMGKD 103 >UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA Length = 191 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 1 MTM-NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATI 54 M + ++ + +E+T +R++V ++L++L+++ + + + L+ + + + Sbjct: 1 MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 N P G++ A H DMY AI++ + LERQL K + + +R + E E Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTRYMKQRQEGRPEPLPGPAEAE 117 >UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria RepID=RP5M_PSEPK Length = 102 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 34/94 (36%), Positives = 59/94 (62%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ + +E+T +R +V ++LA++E + N +I+ E +AT+ P G Sbjct: 1 MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEA 94 +VA+ +HEDMY AI+ L +KL+RQL K + K ++ Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEKQQS 94 >UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10 Tax=Clostridiales RepID=Q0B0B5_SYNWW Length = 181 Score = 122 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M I + +EIT A++ + RL+KLEK+ + + LS E + + TI + Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L +DMY++I+ + KLE+Q+ K + + +K A EE+++E Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRLYRSNRGAGLKKA-LAEEIKKE 112 >UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria RepID=Q7W3J9_BORPA Length = 112 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 63/102 (61%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++I + +++TPAIR++V ++LA++ + H+I+ ++LS EP A+ T+ Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 + E++Y AI+ L++K++RQ+ K + K ++ A ++ + Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSHSAESAKR 102 >UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular organisms RepID=RP5M_SALTY Length = 95 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NIT +EIT A+R+ V + AKLE++ + +++L E ++DAT++ G Sbjct: 1 MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + AS + +DMY AI+ LI+KL RQL + + K + Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95 >UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1DDE8_MYXXD Length = 221 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 54/101 (53%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M NIT +Q + +++++ +++ ++ + H++LS E AD TI++ V Sbjct: 1 MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 L K +DMY +I+ ++K+ERQL + + K ++ V Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSHHGRERV 101 >UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12 Tax=Firmicutes RepID=Q2RLX7_MOOTA Length = 190 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 56/112 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I K + +T A+RQ++A RL K+E++ + + L+ V + TI + Sbjct: 16 MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L DMY +++ ++ KLE+Q+ K + + + ++K+ + EE Sbjct: 76 LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNKKIKNGTIKEFAAGQPEEE 127 >UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ3_9FIRM Length = 181 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV- 60 T + K +EITP++R++V R+ K+ K+ + + ++L+ + + T+ P G+ Sbjct: 3 TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIL 62 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 L DMYT+I+ ++ KLERQ++K + K R + K Sbjct: 63 LRGEESTMDMYTSIDLVVEKLERQIHKQKTKLARRLRSGQFKTEELKSSP 112 >UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH Length = 113 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 55/113 (48%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT +++T A++ +V ++ +LE+ ++++ H+ILS E A+A + Sbjct: 1 MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A EDMY AI+ +I+KL+RQL K + K E Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDHHRREGAAQKAGAGAGAAE 113 >UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria RepID=B5JSL3_9GAMM Length = 117 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPN-- 58 M +N+T +++T A+R +V D+ +LE+ H+ H+IL E A+A ++ P+ Sbjct: 1 MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 G L A +HEDMY AI+ L++KL+RQL K + K Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDHHKRE 101 >UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Psychromonas RepID=A1SRN9_PSYIN Length = 136 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 53/110 (48%), Positives = 70/110 (63%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ITSKQ+ IT +R V +R KLEK Q LI PH+I++KEP+G +ATIN PN Sbjct: 1 MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + A +++D+Y AI +L KLERQL K HK EA RA + KD E+ Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKYLHKSEASRAKNNGKDMCRTGEI 110 >UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Leptospirillum RepID=A3EWH8_9BACT Length = 176 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 52/113 (46%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T + MEIT AIR V +++ L++ +IL E + T++ + Sbjct: 1 MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + A D+Y +++ ++KLERQL + + K A +E V + Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIRHGHATNGQSGKPTMESVSAD 113 >UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Anaeromyxobacter RepID=A7HIE3_ANADF Length = 185 Score = 117 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 50/100 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NIT + +E T A++ HV R+ ++++ H +L E A+ T+ + Sbjct: 1 MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L + + DMY +I++ +K+ERQL K + K + Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNHYKSNG 100 >UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11 Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB Length = 182 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 58/110 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +T + ME + A++ + ++L +++K+ I + L+ E +A+ TI Sbjct: 1 MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + A+ + DMY +I+ + +K+ERQL + + + +A + A ++ + + Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARERQVQKSI 110 >UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Proteobacteria RepID=Q122P6_POLSJ Length = 109 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATIN 55 M + I+ +E+TPA+R +V +L ++ + +++ ++L+ + + A+ ++ Sbjct: 1 MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L A H D+Y A++EL +KL+RQ+ + + K + + + A Sbjct: 61 VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDHHHVAAKRQA 109 >UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134 Tax=Bacteria RepID=B8CYM6_HALOH Length = 184 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQGFVADATINTPNG 59 M + K +++TPA++++ ++++KL K+ HI + E + + T Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 +L + +DMY +I+ ++ KLERQ++K + K + Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKINRK 96 >UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella RepID=B0TYD3_FRAP2 Length = 102 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 56/102 (54%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + +E+T AI+ +V +++ K+ + ++ + +IL E VA+A + P Sbjct: 1 MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 VA + +D+Y AI+ L +KL RQ+ K ++K A + Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRDNHATGHSE 102 >UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI17_THEYD Length = 173 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 1/112 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I K +++T A++Q++ R+ K E++ T + +S E D + + Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK-DANFVEEVE 111 + A GK ED+Y+A+++++ KLE+Q+ K + K + + ++K + EEVE Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQNKNKKETIKYPSALSEEVE 112 >UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98 Tax=Gammaproteobacteria RepID=A1RNM6_SHESW Length = 95 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 57/95 (60%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +EIT ++R +V ++ +KLE+ + N H++L+ E +A+A IN G Sbjct: 1 MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A+ +H DMY AI+ LI+KL+RQ+ K + K Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95 >UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIZ4_ACIFE Length = 181 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + K +E+T A++ +V R+ + K + ++ E + T+ V Sbjct: 1 MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L A ++MY +I++ + K+ERQ++K + + +R ++ KDA E+ Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRL-MKRKYSNFKDAAPAPLPED 111 >UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli RepID=Q71WR7_LISMF Length = 187 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHL--INPHIILSKEPQGF-VADATINTPN 58 NI + +E+T IR +V ++ KLE++ T N H+ L + TI PN Sbjct: 3 KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNAKVEVTIPLPN 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 VL A D+Y +I+ +++KLERQ+ K + K + + F Sbjct: 63 LVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGAERDYFA 111 >UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCZ2_9FIRM Length = 180 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MT+ + K +E+TPA++ +V ++ + K + ++ E + + T+ V Sbjct: 1 MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 L A E+MY +I+ + K+ERQ++K + + +R + +DA Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRL-MKRKYNNFRDAA 104 >UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms RepID=RP5M_RALEH Length = 116 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 M I+ ++ITP +R++V +L ++ + +I ++LS + A+ ++ Sbjct: 1 MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 + HED+Y AI+ L++KL+RQ+ + + + + + Sbjct: 61 LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHDREAVKYQMAAAQ 113 >UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FF9 Length = 104 Score = 112 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 52/104 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT ++ITPAI ++ + K+E + LIN LS E VA++T++ P Sbjct: 1 MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 + A DMY AI LI KL+ Q+ K + K S ++ Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNHHKLESPRNQ 104 >UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I442_9CLOT Length = 178 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 54/113 (47%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++ +K TPA+++ + +L+K++++ + LS + + TI + Sbjct: 1 MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A EDMY +I+ ++ KLERQ+ K + K R + + +E Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRRNNESLRFPQLDEVALSDE 113 >UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF930 Length = 129 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 55/94 (58%), Positives = 71/94 (75%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M++NI+SKQM+ITPAIR H+ +RLAKLEK+ T LINPH +L K+P F +ATI TP G Sbjct: 36 MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEA 94 LVA +HED+YTAI ++ KLE +L KL+ K E Sbjct: 96 LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEKNEH 129 >UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ Length = 192 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINP--HI-ILSKEPQGFVADATINTPN 58 I + IT AIR ++ D++ KLE++ + N H+ + + + + TI N Sbjct: 3 RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKN 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L A +H+D+Y I+ + +KLERQ+ K + + R+ T + FV EV+E Sbjct: 63 VTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVN-RKHKTHGEPEAFVAEVQE 115 >UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGY6_9BACT Length = 177 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 51/85 (60%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT++ +E+T AIR + +++KLEK+ ++ + +++L + + + ++ Sbjct: 1 MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60 Query: 61 LVASGKHEDMYTAINELINKLERQL 85 + K ED+Y +I+ ++K+E+QL Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85 >UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT Length = 110 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 42/102 (41%), Positives = 66/102 (64%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ITSK +++TP+IR++V + KLE+ Q +I+PH+ + KE + +V +A I P G Sbjct: 1 MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 L A +HED++ AIN L KLERQ+ + H+ +ARR + Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRHIHRPDARRHRDVQR 102 >UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12 Tax=Clostridia RepID=B0K3A9_THEPX Length = 181 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQ-MEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + ++ K M +T +R V ++KL K+ +LS + +A+ TI Sbjct: 1 MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A +DMY +I+ +++K+E+Q+ K + K + R Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96 >UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation protein family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G806_SORC5 Length = 122 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + M T A++ + +++AKL+K+ + + LS E VAD +++ + Sbjct: 1 MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQ-HKGEARRAATSVKDANFVEEVEEE 113 A+ + EDMY +I+ + +KLERQ+ + H +R TS + + EVE E Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIRDGKGHTIARKRGGTSAGE--YAVEVERE 112 >UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1 Length = 207 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 2/103 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-GFVADATINTPNG 59 M ++T +Q E T A++++ DR+ +++K+ I+ H+++S E D T+ NG Sbjct: 1 MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60 Query: 60 VLVA-SGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + VA E M+++I+ + K+ERQ+ + + K + + Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTHKVKNHI 103 >UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae RepID=C6M3U2_NEISI Length = 104 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 51/96 (53%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT ++T AI+ +V+++L ++ + + I+ I LS E A+A I+ Sbjct: 1 MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 L +DMY AI+ L++KL+R + K + K R Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEKSGDVR 96 >UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria RepID=A5CWW3_VESOH Length = 102 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 54/98 (55%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ ++IT AI+QH +L K++ +IN ++IL + A+A I+ Sbjct: 1 MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 L A + DMY +I++++NKL+ Q+ K + K R Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNHRKK 98 >UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21 Tax=Shewanella RepID=A3QBU6_SHELP Length = 124 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 43/94 (45%), Positives = 60/94 (63%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLV 62 + ITSK E+T IR+ + RL KL + LINPH+I+ +E QGF +A++ P+ L Sbjct: 2 IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61 Query: 63 ASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 A K +D+Y AIN + KLE+QLN+L HK E R Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHKPEGAR 95 >UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46 Tax=Bacteria RepID=Q28VX1_JANSC Length = 235 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M I+ KQ+EI A++ HV D L + +K+ + ++ SK F + T++ G Sbjct: 45 MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104 Query: 60 VLV-ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + A ++Y A +KLE+QL + + + + + Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDHHKDRA 146 >UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD Length = 180 Score = 107 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 8/121 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPH--IILSKEPQGFVADATINTPN 58 M + + +T A++ +V ++A+L ++ + + ++ E + T+ Sbjct: 1 MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR------RAATSVKDANFVEEVEE 112 + A K DMY +I+ +KLE Q+++ + K R R D + V E ++ Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDAVAETDD 120 Query: 113 E 113 E Sbjct: 121 E 121 >UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21 Tax=Betaproteobacteria RepID=A9BRS9_DELAS Length = 119 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 M + I+ +E+TP++R +V +L ++ + +++ ++L+ Q A T+ Sbjct: 1 MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 L H D+Y A++ L +KL+R + + + + + R ++ + Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQGSRYGSAKR 107 >UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium RepID=C9XLM7_CLODC Length = 187 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 4/112 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADAT-INTPNG 59 M + ++ +QM++T I+ +V +L++LEK+ + +S + + T I Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR---RAATSVKDANFVE 108 ++ A +D+Y AI+ + +KL RQ+ K + K + + + ++ +F++ Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKSIRFENLDFID 112 >UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSN7_9PROT Length = 202 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQGFVADATINTPNG 59 M +++ KQ+++ +RQ + + + K+ + I + LS++ F AD ++ G Sbjct: 10 MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + + A G+++D Y A ++E+QL + + + S + V Sbjct: 70 ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDHHKGHSGDVVPAAQYV 121 >UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUS0_9FIRM Length = 176 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + K +++ ++ + +KL+K+ + + SK+ G + TI P + Sbjct: 1 MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVKDANF-VEEVEEE 113 L A +DM+ +I++ ++KLERQ+ K + + + R + +++ NF E V++E Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKRYQNNETIRFDNFDKEPVQKE 115 >UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJD6_9BACT Length = 178 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 51/99 (51%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT++ E+T AIR +V +KL K+ +I H +L+ E + + +++ Sbjct: 1 MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 L + + DMY AI+ + K+E Q+ KL+ + + Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDHQKRA 99 >UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae RepID=B0U6N0_XYLFM Length = 105 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 49/99 (49%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +Q+E+TPA+R++V +L +L++ +H LS ATIN P Sbjct: 1 MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 L A+ MY AI+ + +KL+R + K + K A Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDHHAKE 99 >UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y948_COPPD Length = 190 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 56/105 (53%), Gaps = 4/105 (3%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG----FVADATINTP 57 +++ K +E+T AI+Q++ +++ ++ ++ ++ +++ KE Q F + T++ Sbjct: 8 KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDAN 67 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 ++ A + D+Y AI++ +KLE + + + K R V+ Sbjct: 68 GRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKLFDSRQGGKVE 112 >UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B9Y7S1_9FIRM Length = 178 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M I K + IT A+RQ + +L+ L+K+ +++ P + TI T Sbjct: 1 MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 G+L +HED+Y AI+ I+KLE Q+ + + + R Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRRHREK 101 >UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae RepID=C8P3U4_ERYRH Length = 180 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M + I K +EIT A+++ V ++L L K+ +++++ PQG + TI + Sbjct: 1 MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVKDANFVEEVEEE 113 G L A HED Y A++ +++KLE Q+ + + K + R S N + E E + Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISRKNREGLSQAFLNMIAESEAK 116 >UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM Length = 209 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + + SK ++++ A+R+ + R+ + K+ ++ +S+E GF + +++ P+G Sbjct: 1 MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 V L A G+ +D Y A + +LE++L + + K + + Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNHHNDNKAE 104 >UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ Length = 178 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 3/115 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEK--WQTHLINPHIILSKE-PQGFVADATINTP 57 M IT K +EI+ AI+ ++ RL K+++ + L++ ++ + K+ +V +N Sbjct: 1 MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 ++ +H D+YTAI+ + LE+Q+ +L+ + + +S +EE E Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNHPHRSSALVETPLEEPGE 115 >UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales RepID=RAFY_STRP6 Length = 182 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEP-QGFVADATINTPN 58 +I + +E+T AIR +V +L K+EK+ I+ + L + + TI + Sbjct: 3 KFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDS 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A +DMY +I+ +++K+ERQ+ K + K + F E E E Sbjct: 63 VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKVPTGQVFTTEFEAE 117 >UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2 Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV Length = 96 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNG 59 M NIT + ++I+PA+R+H+ L +LE+ ++ + + L +A+ T++ + Sbjct: 1 MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A G+HEDMY AI+ L KLE+QL + + K E R Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96 >UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT Length = 178 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEPQGFVADATINTPN 58 M NI +K + +T +++H+ +LAK+ + H + + + KE + + T + P Sbjct: 1 MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 V+ + +D Y + + N LER++ + + + R A++ + + EV +E Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMRHRASAKEILEAIPEVPDE 115 >UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae RepID=Q5SIS0_THET8 Length = 186 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 13/126 (10%) Query: 1 MTM-NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-----VADATI 54 M + + + +EIT AIR +V +LA+L+++Q + ++LS A+ + Sbjct: 1 MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT-------SVKDANFV 107 + P G++ + D+Y AI+ +++LE Q+ + + + + + V+D + Sbjct: 61 DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQGPPPPEVRDLEAL 120 Query: 108 EEVEEE 113 + EEE Sbjct: 121 RKPEEE 126 >UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3 Tax=Psychrobacter RepID=A5WCB7_PSYWF Length = 132 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 15/128 (11%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----------PQGFVA 50 M ++IT + IT A++ V D+L+K+E+ + + +ILS + A Sbjct: 1 MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGE-----ARRAATSVKDAN 105 +A + + +DMY AI+E+ +KL+RQ+ K + + + ++R V Sbjct: 61 EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRIDRKTRSSKRRERLVASLP 120 Query: 106 FVEEVEEE 113 VE EE Sbjct: 121 IVEPAAEE 128 >UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes RepID=D2BPB3_LACLK Length = 185 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEP-QGFVADATINTPN 58 NI + +E+T AIR +V D++ KL+K+ H + ++ L + + T+ N Sbjct: 3 KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKN 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 L A +DMY++I+ + KLERQ+ K + + + F +E Sbjct: 63 VTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDE 113 >UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP Length = 178 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-GFVADATINTPN- 58 M + IT+K +++TPAI+ RL K+EK+ ++ I LS + + A ++ N Sbjct: 1 MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + A+ D+Y AI+ K E QL K++ K ++RR+ + NF++ V Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSRRSKK-EEIVNFIDPV 111 >UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MED7_PARUW Length = 211 Score = 102 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 53/98 (54%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVL 61 + IT + +EIT +++ + ++++K+E++ +I+ ++I+ + + + + + Sbjct: 16 NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKI 75 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 + DMY +I++ I +LE Q+ + + K + A + Sbjct: 76 QSQAATPDMYASIDKAIARLEAQIRRYKSKIQDHHAKS 113 >UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2 Length = 193 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHL-INPHIILSKEPQ-----GFVADATI 54 M + I + +T +I +V +L K K + LS A+ T+ Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 V+ A E++Y +I+ + +K+ RQL K + K ++ K + + E Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPE 115 >UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A8RDK2_9FIRM Length = 177 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M +NI K + +TPA+ + + +L LEK+ + ++++ P + TI T Sbjct: 1 MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQH----KGEARRAATSVKDANFVEEVEE 112 VL H+D+Y AI+ I+KLE Q+ + + K + + A +++ +F + E+ Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTRKNKEKLAYAFIEEMDFEDSYED 118 >UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5 Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5 Length = 196 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+ ++ K + + A+R V +R + L K+ + HI LSK+ GF D ++ +G Sbjct: 1 MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + L A D Y + ++ + ++E++L + + K + R A S Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDRSARKS 102 >UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium RepID=C9XIR4_CLODC Length = 183 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATI-NTPNG 59 M + I+ KQ+E+T AI+ + +L+KL+ + + + +S + TI Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA-TSVKDANFVEEVEEE 113 ++ A E++YTAI+ + +KL +QL K + + + + S++ + + +E Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSIRFQDSEINLADE 115 >UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVF2_9PROT Length = 107 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 53/101 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + +EIT A+ + ++ K+ + ++ + IL E +A+ ++ + Sbjct: 1 MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + + DMY I++LI+K++RQ+ K++ K + + V Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDHHQSEGV 101 >UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSN2_SYNAS Length = 209 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 55/110 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++T + E Q+V DR+ +L K+ + H++L+ E VA+ ++ T Sbjct: 31 MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 L+ + +DM+ AI+ + K+ERQL K + K + T ++ E Sbjct: 91 LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGYKNNTMKEEETIEAEA 140 >UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM Length = 128 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 1/101 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-ADATINTPNG 59 MT ITSK++++T + + +A + AKLE++ +INPH+ +SK+ +A+I+ P G Sbjct: 1 MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L+A + ED+Y AI L KLERQLNK K A ++ Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAHKSGKE 101 >UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ65_DESAH Length = 179 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++T KQ++ + A++ +V ++ + +K +++LS E +A+ T+ Sbjct: 1 MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT--SVKDANFVEEVEE 112 + A + E+MY++I+ L++K+ Q+ K + K + S+KD + + E Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRHMSGNKASIKDNDILLTPPE 114 >UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii RepID=A9KDT2_COXBN Length = 96 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 52/96 (54%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T + ++I+PA+R+ +L +++ + + N HII + DA + P Sbjct: 1 MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 + A + +DMY ++ L++KLE QL+K + K R Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDHR 96 >UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales RepID=RP5M_BRAJA Length = 203 Score = 99.9 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+ I+ K + + A+R V+DR + L K+ + HI LSK+ GF D ++ +G Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 + L A D Y + ++ + +E++L + + + + R A Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDRSARK 101 >UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB Length = 209 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 9/117 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLIN-PHIILSKEPQG-----FVADATI 54 M + I K ++IT IR ++ ++ + ++IN + LS A+ T+ Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 V+ A E++Y +I+ + +K+ R+L KL+ K R+ + KD N V E E Sbjct: 61 FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEK---RQDKSRAKDTNSVVEPE 114 >UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Fusobacteriaceae RepID=C7N909_LEPBD Length = 106 Score = 99.1 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG-----FVADATIN 55 M + I+ KQ++IT AI+ + ++++++ K+ + ++L+ E AD + Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + +++D+Y AI++L ++LERQ+ K + + + + Sbjct: 61 ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDHNKKGT 105 >UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes RepID=Y1964_STAS1 Length = 190 Score = 98.7 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 3/115 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINP--HI-ILSKEPQGFVADATINTPN 58 I + + IT AIR ++ +++ KLE++ + N H+ + + + + TI Sbjct: 3 RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLKK 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A +++D+Y I+ + NKLERQ+ K + + R ++A E+E Sbjct: 63 VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEEKE 117 >UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT Length = 200 Score = 98.3 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 9/111 (8%) Query: 10 MEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV-LVASGKHE 68 ME + A+R + DRLAK++++ + + + S E +A + NG+ L +S K E Sbjct: 1 MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLRNGLQLHSSEKTE 60 Query: 69 DMYTAINELINKLERQLNKLQ--------HKGEARRAATSVKDANFVEEVE 111 MY++I+ + K+ERQ+ + + HKG+A R V + EE E Sbjct: 61 SMYSSIDMALAKMERQVRRYKDRITNHKPHKGKAARVRQVVFSLDGQEEPE 111 >UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus RepID=B5YF17_DICT6 Length = 179 Score = 97.9 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATIN 55 M +N SK + IT ++Q+ +L++L ++ ++ N ++ S+E + + TI Sbjct: 1 MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVKDANFVEEVEEE 113 ++ AS ++D T+I+ +++KLE QL +L+ K + R A S+++ +EVEE+ Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVDKGRRAESIREILAEKEVEEK 119 >UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli RepID=A8PQ11_9COXI Length = 111 Score = 97.9 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 61/102 (59%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT +++T A++Q++ D+ +LE+ HI LS E VA A ++T Sbjct: 1 MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 A K+E++YTAI+ELI+K+E+Q+NK + K + +R S K Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKEKRHDRSEK 102 >UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BX30_HYPNA Length = 198 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + IT + ME+ A+R + + L + K+ + + ++ +S++ D ++ P+G Sbjct: 1 MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 + L +SGK D Y A+ + K+E+++ + + + + Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDHH 98 >UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=bacterium Ellin514 RepID=B9XGM0_9BACT Length = 117 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATIN 55 M + +T+ + +T AI H+ R+ KLE + IN + L + + F + Sbjct: 1 MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 P L A DMY AI+ + K+E+Q+ K Q K +AR+ + + +E E Sbjct: 61 VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKARKHTVASRTKRSRQEAE 116 >UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Gammaproteobacteria RepID=A6W0C2_MARMS Length = 105 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Query: 4 NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVA 63 I+ +++TPAI+ H+ ++L+K+ K + + ++ L K+ + A+A ++ P + A Sbjct: 5 KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFA 64 Query: 64 SGKHED-MYTAINELINKLERQLNKLQHKGEARRAAT 99 S ED ++ AI+++++KL +Q++K + K T Sbjct: 65 SASSEDRLFHAIDDMVDKLAKQIDKHKTKQSCTNHKT 101 >UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Verrucomicrobia RepID=B4D5R5_9BACT Length = 191 Score = 96.4 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV-L 61 + +T + + +T I+ + R+ L +I H+IL E A+ ++ N + + Sbjct: 10 VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHITI 69 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 AS + +DMY +I+ + K+ +Q+ K + K + E+V Sbjct: 70 EASHETDDMYASIDGVAAKIAQQMRKYKTKILRNHRPRQQSIRHLEEQV 118 >UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus marinus RepID=A2C0K6_PROM1 Length = 194 Score = 96.4 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLI-NPHIILSKEPQ----GFVADATIN 55 M + I + +E+TP++R + ++ K ++ + LS A+ T+ Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 V+ A + E++Y +I+ + NKL RQL K + + + + + E Sbjct: 61 ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHNNQSTKSVQNE 114 >UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium RepID=C3WBJ3_FUSMR Length = 183 Score = 96.0 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS----KEPQGFVADATINT 56 M M I KQ+ IT AI+ + +L ++EK+ +I I LS K A+ Sbjct: 1 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEA--RRAATSVKDANFVEE---VE 111 + AS D+Y AI+ + + LE QL K + K + ++ + E VE Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIRTAVQSREPMIRKVKYDPETNTVE 120 Query: 112 EE 113 +E Sbjct: 121 KE 122 >UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE Length = 191 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQGF-----VADATI 54 M++ +T ++M +T A+R++ +++ K + I+L E V + T+ Sbjct: 1 MSITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPANPRPAVCEVTL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 T ++ EDMY AI+ K+ RQL K + K R+ + + E Sbjct: 61 RTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDRKLRAADETIRIEPSAAGE 119 >UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA Length = 212 Score = 95.6 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 51/98 (52%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVL 61 + +T + + +T A++ + ++++K+++ +I+ I + + D + + + Sbjct: 16 NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKI 75 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 + +DMY +I++ ++KLERQL K + + +A Sbjct: 76 KSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDHQAKK 113 >UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter RepID=RP5M_ACIGB Length = 113 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ----------GFVA 50 M + I + ITPAI +++ DR ++ K + + + LSK+ Q +A Sbjct: 1 MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 +A + P L A +DMY AI +L +KL+RQL+K + Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99 >UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4 Tax=Acidithiobacillus RepID=RP5M_THIFE Length = 78 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS---KEPQGFVADATINTP 57 M + IT + +++T +I+ + +++ +L ++ H+ N ++L E V D T+N P Sbjct: 1 MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60 Query: 58 NGVLVASGKHEDMYTAIN 75 V A DMYT I+ Sbjct: 61 GHVFHAEVHDADMYTGID 78 >UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PW5_SOLUE Length = 181 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 7/116 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT---HLINPHIILSKEPQGFVADATINTP 57 M + T +Q+E+ PA + + R AK+ + H+ILS E A+ATIN Sbjct: 1 MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 N LV G D++ AI+ KLE+Q L+ + + R + + EVE E Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQC--LKERTKFRDSKRT--PHKAAPEVETE 112 >UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VDW4_9CLOT Length = 170 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 45/88 (51%) Query: 8 KQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKH 67 K +++T ++ V D+L+KLEK+ + S E + TI ++ A Sbjct: 3 KIIDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVS 62 Query: 68 EDMYTAINELINKLERQLNKLQHKGEAR 95 +DMY +I+ ++ +ERQ+N+ + K + Sbjct: 63 DDMYVSIDLVLEVIERQVNRHKKKLIDK 90 >UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae RepID=B4RCJ5_PHEZH Length = 222 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 2/100 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M + +T K +++ A+R VAD L A +EK+ +++S+E F D + Sbjct: 13 MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 L G D + A + + K+++++ + + + + Sbjct: 73 QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDHSPQ 112 >UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N462_9BACT Length = 114 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M +++T +Q EITP+IR++V R+ L E + +++ + F +N Sbjct: 1 MKISVTGRQFEITPSIREYVESRIQALVEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYH 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 V+ A + D+Y + + + K++ QL ++ K + +A Sbjct: 61 VVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSHQA 98 >UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO Length = 284 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 11/108 (10%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTH--LINPHIILSKEPQ---------GFVA 50 + + + +EIT +IR++ +++ K + + S Sbjct: 81 KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKT 140 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 + T+ T NG++ + + +D+Y +I+ + +KLER+L K++ K ++R Sbjct: 141 EVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEKKISKRPK 188 >UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Nautiliaceae RepID=B9L9D3_NAUPA Length = 166 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG-FVADATINTP-N 58 M + I + +E+T A++ H++ ++++EK+ +++ + + K+ + F + +N P Sbjct: 1 MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 G V K +DMY A+++ +KLE+ L + K R +++ VEE ++E Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDYRKKDRIEEL-IVEEEQDE 114 >UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR Length = 256 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 52/112 (46%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M NI K + IT +R+H+A+++ ++ +I+ +II + TI V Sbjct: 1 MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 K +D+Y AI+ + K+ER++ K + + + V + +E + Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKERNIDKSQRAVVDKSMQNDEEDN 112 >UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM Length = 112 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 56/112 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + ++ + +I++ V L ++ + + H+IL K + +A+AT++ Sbjct: 1 MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 + A +++Y A++ L +K++RQL+K+ K ++ +E Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQKNVNKKGVQRPATEAEIEAEPA 112 >UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria RepID=B6EGD2_ALISL Length = 120 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 2/99 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQG-FVADATINTPN 58 M + IT ++ITP IR+ + + KLE K +I H ++K G +A + Sbjct: 1 MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 G + AS + ED++ I E+ KLERQL+KLQHK EARRA Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEARRA 99 >UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33 Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN Length = 122 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ +++T +I++H+ ++ AK+ LI+ II+SKE F + + N Sbjct: 1 MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEA---RRAATSVKDANFVEEVEEE 113 + A G MY AI KLE L + + +A + + + ++ + E+E Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLKADLHEKPDLTEPETDYETDEEKE 116 >UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEK7_9RHIZ Length = 198 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+ IT K ++ A + + +D++ L K+ + + H+ L +E F ++ +G Sbjct: 1 MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60 Query: 60 VLV-ASGKHEDMYTAINELINKLERQLNKLQHKGEAR-------RAATSVKDANFVEEVE 111 +L+ A G+ +D YT+++ ++LE ++ + + + + R ++ ++V V Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNHSSPEAAARRKIDMEARDYVVSVG 120 Query: 112 EE 113 EE Sbjct: 121 EE 122 >UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ2_ACHLI Length = 185 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 1 MTMNITSKQ-MEITPAIRQHVADRLAKLEKWQTH--LINPHIILSKEPQGFVADATINTP 57 M I K T AI+ +V +L K+ + ++L + + TI P Sbjct: 1 MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR--RAATSVKDANFVEEVEEE 113 +L + + DMY AI++ ++KL Q+ + + K + V F E ++ Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHHFEKRGQEVFSTEFSLEAMDK 118 >UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD Length = 189 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 15/128 (11%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTH---LINPHIILSKEPQGFVA-----DA 52 M + + + + +T ++ ++ +++ ++ K+ + + L E +A + Sbjct: 1 MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60 Query: 53 TINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-------RAATSVKDAN 105 T+ VL A EDMY +I+ + +KLERQ+ + + + R + Sbjct: 61 TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDRWHGRLKNHEGARAEPQP 120 Query: 106 FVEEVEEE 113 FV E EE+ Sbjct: 121 FVAEEEED 128 >UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15 Tax=Desulfovibrionales RepID=Q310S7_DESDG Length = 190 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEPQGFVADATINTPN 58 M + T K E + ++++ R KL ++ + ++LS + A+ Sbjct: 11 MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGE 93 L A + EDMY I+ +++KLE Q+ K K + Sbjct: 71 LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105 >UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT Length = 177 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M ++K + +PAI +++ R K+++ +++ I K+ +V A IN Sbjct: 1 MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 ++V K D+YTAI+ L + LE+++ K++ R K + + E E Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVRERHRMPVEKIPSISDTYEFE 115 >UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia sp. EuI1c RepID=D1V7P2_9ACTO Length = 283 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + + + R HV +LAKLE++ +I + LS+EP + T+ Sbjct: 1 MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 T V+ A D Y+A++ KL +L + + + + +V Sbjct: 61 YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDHKHGNNGHGRAYVGPPP 117 >UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPI1_PARL1 Length = 193 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + ++ +++ A+R H +RL + K+ ++ + L+K+ F AD + + +G Sbjct: 1 MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQ 84 + + A G ++Y + + +LE++ Sbjct: 61 LRVNAQGTANEVYASFEAALERLEKR 86 >UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia RepID=C6V4K5_NEORI Length = 186 Score = 88.3 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADR-LAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + ++ ++ ++ +++ DR L ++K T + LSKE + F D +N+P Sbjct: 1 MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 ++ ASG+ D Y A + +K+ +L + + + + ++ Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEHKSEA 100 >UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LB60_RHOVA Length = 199 Score = 88.3 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+ +T K +++ ++R++ +R+ L+K+ ++ I + K GF + I+ +G Sbjct: 1 MTIKVTGKNIDLGESLREYALNRVESALDKYSGRSVSGQISVEKNTDGFFSHCAIHLESG 60 Query: 60 -VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 L ++G D Y +++ + +LE++L + + + + + Sbjct: 61 LDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDHGQGDAA 103 >UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium RepID=A5TX76_FUSNP Length = 181 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 8/121 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS----KEPQGFVADATINT 56 M ++I +++ +T AIR++ ++++K+EK+ +I L+ K V + Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA----NFVEEVEE 112 L A+ D+Y +I++ ++ +E L K + K + + +++ E EE Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSRAKVQDDTRKKSYSFDYIVEPEE 120 Query: 113 E 113 + Sbjct: 121 K 121 >UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRA6_9PROT Length = 197 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + IT + +++ A++ HV + L A +EK+ + KE G + T++ +G Sbjct: 1 MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60 Query: 60 VLVA-SGKHEDMYTAINELINKLERQ 84 V +A GK +D Y A + + KLE++ Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLEKR 86 >UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYI7_METI4 Length = 115 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-------QGFVADAT 53 M + I+S +++T A+ H+ + KL + +++ + + EP Q F A Sbjct: 1 MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60 Query: 54 INTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 + P +VA + D+Y A++ ++++L RQL K + + TS + Sbjct: 61 LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTDKSRDTSREFKE 112 >UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2 Tax=Alteromonadales RepID=Q21ND3_SACD2 Length = 118 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N++ +E+T AIR ++ K+ HL + + L+ E +AT Sbjct: 1 MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 L D+Y AI + + KLE L+ + +A + Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRKGITKANLHEKPI 101 >UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XRD3_9CAUL Length = 237 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLI-NPHIILSKEPQGFVADATINTPN 58 M + ++ K +++ A+ ++ L + K+ N +++SK+ GF D + + Sbjct: 19 MQVQVSGKHVDVGEALGSRISQELQEGVGKYFERGGENAEVVVSKDGYGFKVDCWVRLAS 78 Query: 59 GV-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 G LV +G D + A + + KLE+++ + + + + E+ E Sbjct: 79 GQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDHHIGPKGLSPEKTEDAARE 134 >UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQP5_9BACE Length = 181 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 7/120 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M T K++ + + + ++ KL+++ I+ S E + TI + + Sbjct: 1 MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-------RAATSVKDANFVEEVEEE 113 + + DM+ I+ + +ERQL K + + E R R+ + ++FV + EEE Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKRLRQDAFVRSVDEEEISSFVPDTEEE 120 >UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IJQ7_AZOC5 Length = 198 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + ++ K M++ A+RQ +DR++++ K+ + H + +E G+ ++ ++ +G Sbjct: 1 MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 L A G ++ + + K+E++L + + + + R Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKGRHPQ 100 >UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04A0 Length = 177 Score = 86.0 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 2/112 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++ ++ E+T + + + +++LEK+ + ++ E Q + IN V Sbjct: 1 MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKL--QHKGEARRAATSVKDANFVEEV 110 L A + E+MY +++++ LERQ+ + + + + R+A + F++EV Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLRTKHRQAEQHIFTPAFMDEV 112 >UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH Length = 122 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-QGFVADATINTPNG 59 M++ IT++ E+ + Q + + K +K++ + + + EP F+ + + G Sbjct: 1 MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANF 106 + + G+ ++ A NE ++L+RQL K + K A R+ K+ Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAHRSEKCEKEKER 107 >UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR29_ACIBL Length = 198 Score = 85.6 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +Q ITPA+R+ V L KL K +ILS E +A+ TI Sbjct: 1 MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 LV G+ DM TAI E + +E+Q K RR A++ E E E Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQALKH---NNRRRNIKRKGKADWKETSEGE 110 >UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO Length = 199 Score = 85.6 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK----LEKWQTHLINPHIILSKEPQGFVADATINT 56 M + +K++E+T A+ ++ R++K L+K + + ++KE + + T + Sbjct: 1 MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60 Query: 57 P--NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 + ++ + D+Y AI+E+ + LER++ KL+++ + + + ++ Sbjct: 61 NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQEQSRTDKKARMEIEQNLQN 118 >UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna RepID=B0S0M8_FINM2 Length = 179 Score = 85.6 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNG 59 M +N +K +++T ++Q +L KL+K+ ++ KE + T+ Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 VL A +ED+ TAI+++ + L RQ+ K + K + R ++ VEE Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKRFTESNSIRFEAVEE 110 >UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Alphaproteobacteria RepID=B0T677_CAUSK Length = 210 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M + I+ K +++ A+R V+D + + K+ + +++SKE F D ++ Sbjct: 1 MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 L++ G D + A + + K+E ++ + + + ++ A + K A Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSHSIAATAKQAE 107 >UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH Length = 111 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 44/82 (53%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T K +E + ++Q V+++L K ++ ++LS E +A+ + Sbjct: 1 MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60 Query: 61 LVASGKHEDMYTAINELINKLE 82 ++ + EDMY AI+ +++K+E Sbjct: 61 IIGKEETEDMYAAIDLVMDKIE 82 >UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium RepID=A9W5P1_METEP Length = 202 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Query: 3 MNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINP----HIILSKEPQGFVADATINT- 56 + +T +++ A+R V DR+A L K+ ++ H+ L ++ + D ++ Sbjct: 4 LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L ASG D++ + + +KLE++L + +HK + AA+ Sbjct: 64 TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDHGAASH 107 >UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PYC3_VIBCH Length = 78 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 36/68 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI +++T +++ +V + KLE++ H+ + +IL E +A+AT++ Sbjct: 1 MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60 Query: 61 LVASGKHE 68 + A E Sbjct: 61 IHAHADDE 68 >UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia RepID=C4K0H4_RICPU Length = 192 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 55/103 (53%), Gaps = 4/103 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M ++++ + + I ++++ +R ++ +K+ T +IN I SKE F D + +G Sbjct: 1 MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 ---VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 ++ ++ D+Y A ++ ++KLE+QL K + K + A Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNHHAGK 103 >UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=Rhizobiales RepID=RP5M_RHIME Length = 190 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 50/114 (43%), Gaps = 2/114 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M++ ++ K MEI + R + +++ + + K+ + + + K F AD ++ Sbjct: 1 MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 VL A+G+ + +A + ++E++L + + K + V + Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDHHNGNGQNSTEVAYRVMD 114 >UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FNI8_SACEN Length = 231 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + + + +E+ RQHV ++L +LE++ I + L E + T+ Sbjct: 1 MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A D Y A++ KLE +L ++ + + Sbjct: 61 KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH 101 >UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Sulfurihydrogenibium RepID=B2V794_SULSY Length = 187 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 12/116 (10%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHL------INPHIILSKEPQGFV----A 50 M + K +EIT I+ + +L +L+ + L + ++ E Sbjct: 1 MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60 Query: 51 DATINTPNG-VLVASGKHEDMYTAINELINKLERQLNKLQ-HKGEARRAATSVKDA 104 D +NTP G V+ A + D+Y+AI+ +I+++ERQL +L+ + EA R + ++ Sbjct: 61 DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRRIEASRRESRLEKM 116 >UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TA00_PHYPA Length = 297 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 9/100 (9%) Query: 5 ITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQG-------FVADATINT 56 I K +E+T AI+Q+V +++ + + + +S + T+ T Sbjct: 92 IQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGRGERLQRCEVTLFT 151 Query: 57 P-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 +GV+ A + E MY +I+ + + + R+L K++ K Sbjct: 152 KKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGH 191 >UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXY8_9BACT Length = 119 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-QGFVADATINT-PNG 59 + I ++ ++IT AIR + + K++K+ +++ + L + + +N Sbjct: 3 NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGP 62 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 +VA + DMY +I+ +++K+ QL K + K E++ V E E Sbjct: 63 TIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIESKIVRQKKHSIGEVAESE 114 >UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MPR7_9FIRM Length = 211 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+NIT+K++++T A + ++ KL+++ + + + LS++ + T+ T Sbjct: 38 MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + + K D A + I+++ RQ+ K + + E + ++ + V E + + Sbjct: 98 IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEKQLHSSFKGSFDDVVEEQAD 151 >UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae RepID=C9M512_9BACT Length = 197 Score = 82.5 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-ADATINTPNG 59 M + T+ +I +++++ +L ++EK+ + +++ + + + + FV + T + Sbjct: 16 MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQH------KGEARRAATSVKDANFVEEVE 111 VL + D+ A + + LER++ + + + +A + +D E E Sbjct: 76 VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYLIDRAQLKAHDVSFGYEDTAAQAEPE 133 >UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEC8_9ACTO Length = 214 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + ++ EI P R++V ++++K+ ++ + L+ E + T+ Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 ++ A + D Y A++ KL +L +L+ + + R Sbjct: 61 YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRR 104 >UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3T1_SPHTD Length = 194 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-----VADATIN 55 M + I ++ + +T A+++++ RL +L+K + + + E VA TI Sbjct: 1 MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTGGEQMVAQFTIA 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 T + +L K+ D++ AI+ I ++ERQ+ + + K R A E + Sbjct: 61 TKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKRVFYRRRQRQMAAEAGEPLP 116 >UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus RepID=C7HV18_9FIRM Length = 177 Score = 81.8 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 4/117 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG- 59 M +NI K + + ++++ ++ +L+K+ + S E ++TI G Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEA-RRAATSVKDANF--VEEVEEE 113 +L A +++ T I+++I+ L RQ+ K + K + RR S+K +F +EE +EE Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQRNRRNGESIKFESFDNIEEGKEE 117 >UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group RepID=Q9ZD30_RICPR Length = 143 Score = 81.4 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M ++++ + + I ++++ +++ ++K+ T +IN I SKE F D + +G Sbjct: 1 MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 ---VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 ++ ++ D+Y A ++ ++KLE+QL K + K + + VK + E Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNHHSGK-VKISEIAYE 112 >UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L9_ACIC5 Length = 225 Score = 81.0 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 48/109 (44%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + T + + + A R + L ++ K +++ H++LS E +A+ TI Sbjct: 1 MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 LV++ + M TA+ + K E Q + + K ++ + + E Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKMVTKKRLPNEEKVIVEPE 109 >UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD Length = 196 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQ-----GFVADATINT 56 + I+ +++ I+ A+R HV ++ K ++ ++L + + T+ Sbjct: 4 IKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTVFV 63 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 N V+ + +DMY AI+E +K+ RQL K + K RR Sbjct: 64 RNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVERRH 104 >UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQU2_AKKM8 Length = 197 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 50/107 (46%), Gaps = 4/107 (3%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV-L 61 + IT + +E+T AIR+ V ++ + ++ ++L + ++ + + + + Sbjct: 10 ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHITI 69 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQH---KGEARRAATSVKDAN 105 AS + DMY I+E I K+ R++ K + K +++ + Sbjct: 70 DASTEGTDMYACIDETITKIMRRMRKHKTRLMKNFRPHHQETIRKLD 116 >UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae RepID=A9WMP6_RENSM Length = 267 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M I+ + + ++ R++ ++++KLE + +SK+P + T+ Sbjct: 26 MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 V+ A D + A + NKL +L + + K + + K Sbjct: 86 QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLHHGRHTPK 133 >UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN Length = 195 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQ-----GFVADATINT 56 + I+ +++ ++ A+R HV +++ K + ++L + + T+ Sbjct: 4 IKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTVFV 63 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKG--EARRAATSVKDANFVEE 109 N V+ +DMY AI+E K+ RQL K + + + A + A EE Sbjct: 64 RNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRGRALSQEE 118 >UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC Length = 180 Score = 78.7 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M ++IT KQ E+T +I+ +V L K+ +I+ ++S + +GF+ D IN Sbjct: 1 MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADERNGKKGFIVDFLINL 60 Query: 57 PNGV-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 +V K +D+Y AI+ + N+ + L + K + K E Sbjct: 61 AKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTHKNKDDKKQNALDE 113 >UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Synergistaceae RepID=D1B9M7_THEAS Length = 180 Score = 78.3 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ++ +E+ +++ + +L KLE++ +++ + + + +V + T N V Sbjct: 1 MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + D+ A + + +ERQ+ + + R + KD +F E E Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDMLVDRLQLKT-KDISFELETE 110 >UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LMC5_PICSI Length = 321 Score = 78.3 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 9/103 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGF-------VADAT 53 + I K ++T A++ ++ +++ ++K + + LS + T Sbjct: 89 RLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVGKGPKIRRCEVT 148 Query: 54 I-NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + +GV+ A + E +Y +I+ + + + R+L K++ K Sbjct: 149 LFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKDGGH 191 >UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales RepID=A8J8B2_CHLRE Length = 286 Score = 78.3 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 17/128 (13%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKE--------PQGFVADA 52 + I +++ +T AI+ +V +++AK + + L + LS + + Sbjct: 71 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 130 Query: 53 TI-NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA-------ATSVKDA 104 TI NGV+ ++Y AI+ + +K+ +L K++ K +R A V + Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 190 Query: 105 NFVEEVEE 112 +F E ++E Sbjct: 191 DFQEYLKE 198 >UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QBC3_CATAD Length = 237 Score = 77.9 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 7/111 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + S+ E+T R+HV ++LAK+E+ I+ ++L +E + T+ Sbjct: 1 MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60 Query: 55 NTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 + P + V+ A D Y+A++ KL+ QL +++ + + R ++ D+ Sbjct: 61 DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIHRNRKAIADS 111 >UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18 Tax=Corynebacterineae RepID=A1T5Y3_MYCVP Length = 250 Score = 77.9 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATIN 55 + +T + +E+ R +VA++L++LE++ L + L E + T Sbjct: 48 EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQHVEITAK 107 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 V+ + Y A+ ++KLE +L K + + + + + E+ Sbjct: 108 GRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIHYGDKTPRSLREACSPEQ 164 >UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT Length = 119 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 48/111 (43%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ++ K +++T A++ V L+ + L ++LS F + ++ Sbjct: 1 MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 L A + +DMY +I + +++L+RQL K + + E E Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEKKLETFHHNHKGEHLGNIERRHEEE 111 >UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS Length = 198 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHI-----ILSKEPQGFVADATIN 55 M + + S+ +++ RQH+ +L++L+++ + + + E T+ Sbjct: 6 MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65 Query: 56 TPNGVL-VASGKHEDMYTAINELINKLERQLNKLQHKG 92 +GVL A + ++Y AI+E+ + L+RQ+ + + K Sbjct: 66 GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH 103 >UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS Length = 211 Score = 77.1 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINT-PN 58 M + + KQ+++ A+R HV D ++ L K+ + ++ +++S++ F AD ++ Sbjct: 1 MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60 Query: 59 GVLVASGKHEDMYTAINELINKL 81 +L + G+ + Y A ++ K+ Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKV 83 >UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QU53_PERMH Length = 188 Score = 77.1 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 11/99 (11%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ------THLINPHIILSKEPQGFV--ADA 52 M + K +++T I+ + +L +L+ + + + + E D Sbjct: 1 MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60 Query: 53 TINTP---NGVLVASGKHEDMYTAINELINKLERQLNKL 88 I GV+ A + D+Y+AI+ +I+++ERQL +L Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRL 99 >UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD Length = 179 Score = 76.7 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+ +K +T IR + +L+K+ + +KE FV + T NG Sbjct: 1 MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60 Query: 61 LVASGKHEDMY-TAINELINKLERQLNKLQHKG-EARRAATSVK 102 ++ S ++ Y TAI+ I+ L RQ+ K + K R+ S+K Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKLMRGRQKGESIK 104 >UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPK4_BDEBA Length = 116 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 47/102 (46%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N T K ++ + ++ + +R+A++ ++ ++ SK F + ++NT Sbjct: 1 MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKY 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 A+ D+Y A++ K+E+Q K + + + K Sbjct: 61 FKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDHKKPELTK 102 >UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacteraceae RepID=Q0BUA9_GRABC Length = 236 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINT-PN 58 M + ++ KQ++++ A+++ VA +L + K+ + + S+ F+ D ++ Sbjct: 35 MHITVSGKQIDLSDALQERVASQLDTISRKYFDQALEAQVTFSRLRSFFICDINLHAGRG 94 Query: 59 GVLVASGKHEDMYTAINELINKLER 83 +L G+ D A ++ + + Sbjct: 95 LILRGEGEAADANGAFDDAAEHIAK 119 >UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ Length = 207 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT---- 56 M + +T + E+T R HV ++L KLEK +I ++ + E AD + Sbjct: 1 MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60 Query: 57 --PNGVLVASGKHEDMYTAINELINKLERQLNK 87 V+ A D A++ ++K+ Q+ + Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRR 93 >UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR Length = 209 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 8/96 (8%) Query: 3 MNITSKQMEITPAIRQHVADRLA-KLEKWQTH--LINPHIILSKEPQ-----GFVADATI 54 + I + +E+TPA+ +HV R+ ++ K ++ + +ILS G + Sbjct: 13 VIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSVSKNPKVKNGHRVEVVT 72 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQH 90 N ++ + DMY +I+ + L R+L K + Sbjct: 73 NLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108 >UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA Length = 172 Score = 76.0 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 16/111 (14%) Query: 1 MT--MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-------AD 51 M + IT + ME + A+ +H+ D KLE++ ++ H+++ EP Sbjct: 62 MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVE-EPHRHKQHGRHFHVR 120 Query: 52 ATINTPNGVLVAS------GKHEDMYTAINELINKLERQLNKLQHKGEARR 96 ++ P +VAS HED Y A+ E + RQL Sbjct: 121 VDVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTHH 171 >UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14ME0_SPICI Length = 125 Score = 76.0 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW----QTHLINPHIILSKEPQGFVADA-TIN 55 M I SK + IT A+ QH+ D KL K+ + L++ I +KE + A I Sbjct: 1 MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTAIDIR 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS--VKDANFVEEVEEE 113 N L A ++ D Y A+++ + K+E QL K++ K E R K + V + EEE Sbjct: 61 GRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDRHNKNQSLGKFYSEVNDAEEE 120 >UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4 Tax=Actinomycetaceae RepID=C2BSF1_9ACTO Length = 219 Score = 76.0 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + ++ EI P R+++ +++AK+E+ + L+ E + T+ Sbjct: 13 MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 V+ A D Y A++ KL +L + + + + R D ++ E Sbjct: 73 LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELDVQIPE 130 >UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29 Tax=Actinomycetales RepID=C7MXY7_SACVD Length = 226 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + I + +E+ R HVA ++A+LE++ +I+ + L EP + T Sbjct: 1 MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLE 82 V+ A + D YTA++ I KLE Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88 >UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7IG48_THEAB Length = 176 Score = 75.2 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++K ++T A++ ++ R K+++ ++ I L K+ F+ A I+ Sbjct: 1 MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN-FVEEVEEE 113 LV + +D+Y I+ L + E++L + + R + F +E+ EE Sbjct: 61 LVVTETSDDIYNLIDILSDAFEKKLKREREYVRTRNKSNLKGLGEVFKDEMPEE 114 >UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487B8_COLP3 Length = 111 Score = 74.0 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I+ +EIT I+Q + ++ AK+ K ++ + ++ EP + T Sbjct: 1 MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60 Query: 61 LVASGKHEDMYTAINELINKL 81 + + + +Y AI ++ KL Sbjct: 61 VTVNASDKQLYVAIAKVAKKL 81 >UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VXE1_9CLOT Length = 183 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT +++ + ++ V +L K + + + ++ E + + TI T +G+ Sbjct: 1 MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60 Query: 61 L-VASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + + +M A++E++N L RQ+ K + K E + Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEKK 96 >UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF Length = 234 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATIN 55 ++IT + +E+ + V +LAK+E+ L H+ L EP T Sbjct: 25 QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 + A K + Y A+ + K+ER L K++ + R+ Sbjct: 85 GKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRSISRSG 127 >UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Marinomonas RepID=A6VX39_MARMS Length = 130 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 4/114 (3%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF---VADATINTPN 58 T+NI+ ++ +++ V D++ L + + ++ L+ E G + +A+++ P Sbjct: 3 TLNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPG 62 Query: 59 GVLVASGKHE-DMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 L A + E + A++ L+ KLE+QL K + K R+ + KD E + Sbjct: 63 HDLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAKHAGRQHHINAKDVESPVERQ 116 >UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Thermotogaceae RepID=A6LJQ7_THEM4 Length = 176 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 46/99 (46%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M I++K +E T A++ ++ RL K+++ + + L K+ +V ++ Sbjct: 1 MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 LV S K D+Y I+ L + E+++ + + A Sbjct: 61 LVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVRPTHKAN 99 >UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP Length = 127 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 5/113 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATINT 56 + + +T A+++ + ++ + L + +++ ++ + ++ + A A I Sbjct: 12 KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEI 71 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 LVAS + +D Y I+ L+ KL+RQL Q + + +R + + Sbjct: 72 GGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKDKRNHPESPEIDAALP 124 >UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0Q0_9FIRM Length = 176 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 49/95 (51%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI++K + +++ + + +KL+K+ I++ K G+ +A + + Sbjct: 1 MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + ED Y A++ + KL RQ++K + K +A+ Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLKAK 95 >UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons RepID=RR30_SPIOL Length = 302 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 10/120 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILS-------KEPQGFVADAT 53 + + + +E++ +R HV D++ K + K + + LS K P+ + T Sbjct: 76 KLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVT 135 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVKDANFVEEVE 111 + T +GV+ A E +Y++I+ + + ++R+L K++ K R + + Sbjct: 136 LFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEP 195 >UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK5_FIBSS Length = 105 Score = 72.5 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-PQGFVADATINTPNG 59 M + +++ + ++ + + + KL K+ ++ + +IL E + ++N Sbjct: 1 MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEVEHQRHCEISVNITGS 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 V+VAS E+M A++ + +++ QL K K R+ + Sbjct: 61 VIVASADEENMGKAVDVTLERIKVQLKKANDKQNDHRSQPVSE 103 >UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTB3_BACTU Length = 181 Score = 72.1 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T K + +T ++ + +L L K+ + + E + ++ ++ + Sbjct: 4 MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEKRLTIS-VSVPFNGEL 62 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQ--HKGEARRAATSV 101 + A K ED Y A++ +++K++RQ+ + K R + Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKDIEKSMRRLHKKHI 105 >UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Betaproteobacteria RepID=Q3SIX5_THIDA Length = 189 Score = 71.7 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 12/119 (10%) Query: 1 MT--MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSK------EPQGFVADA 52 M + IT + +E + A+ H+ ++ KLE + +++ ++L + + F Sbjct: 1 MKTPLQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRI 60 Query: 53 TINTPNGVLVA-SGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 I P +V HED+Y A+ + + RQL+ + R T D F+ EV Sbjct: 61 DIGVPGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRRL---RRETKTHDREFIGEV 116 >UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Aquificaceae RepID=B4U9J0_HYDS0 Length = 200 Score = 71.7 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 20/125 (16%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ----THLINPHIILSKEPQGF-------- 48 M + K EIT +R V +L+K ++ + +S Sbjct: 1 MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60 Query: 49 ---VADATINTP---NGVLVASGKHEDMYTAINELINKLERQLNKLQHK--GEARRAATS 100 D I G + A + +D+YTAI+++++++ERQL KL+ + R+++ + Sbjct: 61 SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKERRLNYRRKSSKT 120 Query: 101 VKDAN 105 ++ Sbjct: 121 KEETR 125 >UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=C6YXL0_ORYSJ Length = 321 Score = 71.7 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 9/111 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGF-------VADAT 53 + + + +++ +++H+ ++ + + K + + LS + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + T +GV+ A E Y +I+ + ++R+L K++ K R K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKP 192 >UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class) RepID=Q6AGI3_LEIXX Length = 232 Score = 71.7 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS-------KEPQGFVADAT 53 M +NI + + IT R++ A++ K+ I+ I +S + + T Sbjct: 1 MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60 Query: 54 INTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 + P + + D Y A + + KL ++ + + + + R Sbjct: 61 LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVHR 103 >UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00W70_OSTTA Length = 184 Score = 71.3 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 13/124 (10%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEPQG-------FVADA 52 M + +EITPAI ++V ++ + + + S + Sbjct: 51 KMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTEV 110 Query: 53 TI-NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKG---EARRAATSVKDANFVE 108 T+ T L A G E++Y I++ + + R + K + K AR AA + Sbjct: 111 TVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKHGGKGARHAAHDASPKEALL 170 Query: 109 EVEE 112 + E+ Sbjct: 171 DAED 174 >UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=3 Tax=Campylobacterales RepID=Q30TJ3_SULDN Length = 180 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M +++T + +E+T AI+ H+ + L K+ +I+ ++I S + V + IN Sbjct: 1 MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIASTQTKKGKDHSVVEFVINL 60 Query: 57 -PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 +V +D+Y AI+ + ++ + ++ + Sbjct: 61 AHKNSIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGHHKD 103 >UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Campylobacterales RepID=D1B1B4_SULD5 Length = 171 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATIN- 55 M +I KQ ++T I+ ++ + L K+ +I+ ++S + +GF + IN Sbjct: 1 MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADEKNGKKGFSVEFAINM 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 +V K +D+Y A++ + + ++ L + K +++ Sbjct: 61 AHKNTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNSQKKVEE 105 >UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG17_9BACT Length = 123 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSK------EPQGFVADATINT 56 + IT M++T AI+Q V +++ +L + + +I + L F+A I Sbjct: 9 LIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIEI 68 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + S D Y A++ L++KL+R L + +R T Sbjct: 69 NGPTMNVSVSDPDCYKAVDLLVDKLDRMLRRRSRLQRVKRKDTHE 113 >UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2 Tax=Proteobacteria RepID=A4U0N1_9PROT Length = 120 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 15/108 (13%) Query: 1 MT--MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHI----------ILSKEPQGF 48 M + IT ++ + A+ V +++AKLE++ + + + L + + Sbjct: 3 MQNPLQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESDHKNSSNLHHKGNSY 62 Query: 49 VADATINTPNGVLVAS---GKHEDMYTAINELINKLERQLNKLQHKGE 93 + +N P LV +HED+Y A+ +ERQL + + Sbjct: 63 LVRIDLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEYVARSR 110 >UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174494B Length = 115 Score = 69.8 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIIL-----SKEPQGFVADATIN 55 M ++I+ + +++T AI Q+ A+R+ +E +I H++L +K + F A + Sbjct: 1 MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 + A D+Y A+++ + L RQL K + +R T+ K Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTALVDKRRQTTQKTKERA 111 >UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis group RepID=Q3YS76_EHRCJ Length = 197 Score = 69.8 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQ--THLINPHIILSKEPQGFVADATIN-T 56 M + IT++ ++T I+ +V + + K+ ++ + LSK+ F + +I+ Sbjct: 1 MNIIITARGFDVTDNIKTYVERSVQDYITKFFADDSTVSVKVTLSKDANLFNSTISISDI 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQ-HKGEARRAATS 100 + + S + Y AI+ I+ L +L K + K R + Sbjct: 61 KSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKTEKINKYRHNKN 105 >UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Actinomycetales RepID=D1BCP0_SANKS Length = 220 Score = 69.4 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + + E+ R+H D+LAK+E+ + ++ E + T+ Sbjct: 1 MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRQSGIRERVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 V+ A +D + A++ +NKL +L + + + R Sbjct: 61 RDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKNR 101 >UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=2 Tax=Planctomyces RepID=C1Z9P6_PLALI Length = 114 Score = 69.0 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNG 59 M + ITS+ I+P ++ + ++ KL + + + ++ +S E + ++ Sbjct: 1 MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHKH 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 VA+ +++ ++K+E+Q++K + K + + + D + Sbjct: 61 DFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDHKGGPTAADVATLP 109 >UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum bicolor RepID=C5WRX8_SORBI Length = 310 Score = 69.0 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 47/99 (47%), Gaps = 9/99 (9%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKE-------PQGFVADAT 53 + + + ++++ +++H+ D++ + + K + + LS P+ + T Sbjct: 73 RLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELGRGPKTSRCEIT 132 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 + + +GVL A E Y +I+ ++R+L K++ K Sbjct: 133 LFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK 171 >UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9I9_9CLOT Length = 180 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLV 62 +NIT++ E+ + + L +++K + LSK G+ D T+ + Sbjct: 2 INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIR 61 Query: 63 ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 E + +I+ ++ L+R+L KL+ ++ + + D Sbjct: 62 GEAAAEKIEPSIDFAVDDLKRKLRKLKTSLVDKKRKSGIDDLAGA 106 >UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0T2_SALRD Length = 132 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ---GFVADATINTPN 58 +T++ ++++ + ++ DR AKLE++ + H+IL K+ A I+ Sbjct: 30 QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQ 89 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L A AIN ++ L RQL K + K ++ Sbjct: 90 KRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRSKDKDAH 131 >UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Actinobacteridae RepID=A6WEN5_KINRD Length = 256 Score = 68.3 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + +T + ++ R+HV D+L K+ ++ + LS E + T+ Sbjct: 1 MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRQASSSERVEITV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKL 81 V+ A +D Y A++ KL Sbjct: 61 RDKGPVVRAEACADDPYAALDLATTKL 87 >UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae RepID=A1ZNT3_9SPHI Length = 100 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-----ADATIN 55 M + S P + + + + KLE + +I+ + L E + +N Sbjct: 1 MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 P +L A ++ + L RQL K + K Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96 >UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8 Length = 99 Score = 66.3 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I + + T + + +++KLE++ +I + L + A ++ Sbjct: 1 MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 NG A ++ AI++ + LE+QL K + K A+ Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIRAK 99 >UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB Length = 180 Score = 66.3 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 6/114 (5%) Query: 5 ITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT-PNG 59 I K ++T I+ ++ D L K + + +S + +GF + I+ G Sbjct: 6 IYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADERNGKKGFTFEFDIHVAKKG 65 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 +V + K +D+Y AI+ + + ++ L + K + + S+++ +EEE Sbjct: 66 NVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNHK-NISLEEIMAAPMIEEE 118 >UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ Length = 309 Score = 66.3 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 9/111 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGF-------VADAT 53 + + + +++ +++H+ ++ + + K + + LS + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + T +GV+ A E Y +I+ + ++R+L K++ K R K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKP 192 >UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Propionibacterium acnes RepID=D1YBK0_PROAC Length = 203 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + ++ + ++ +R V DRL+ +EK + + ++ + + + T+ Sbjct: 1 MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNK 87 V+ A G+ ED A + ++L QL K Sbjct: 61 RAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVK 93 >UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6 Tax=Leptospira RepID=B0SB82_LEPBA Length = 95 Score = 65.6 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 41/95 (43%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N T K ++ + A + ++L ++ K+ +++ + A+ +N Sbjct: 1 MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 A + +D+Y I+ L +K+ Q +K K Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95 >UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Campylobacterales RepID=C3XP50_9HELI Length = 186 Score = 65.6 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 13/108 (12%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE------------PQGF 48 M ITS+ E+T A++ ++ LEK+Q +++ +I++ + + F Sbjct: 1 MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQEKKGSKKGEKKKKRTF 60 Query: 49 VADATINT-PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 D T++ + LV + +D Y A++ I ++ + L + K + Sbjct: 61 GIDITLSLAHSNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNKK 108 >UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria RepID=B8GU63_THISH Length = 192 Score = 65.6 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 12/105 (11%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS------KEPQGFVADATINT 56 + +T + M+ +PA+ V ++ KL ++ H++ +++ + + + Sbjct: 9 VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68 Query: 57 PNGVLVASGK------HEDMYTAINELINKLERQLNKLQHKGEAR 95 PNG LVAS + HED+Y A+ + + + RQL K R Sbjct: 69 PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGR 113 >UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SAX9_OSTLU Length = 132 Score = 65.2 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 5 ITSKQMEITPAIRQHVADRLAKLEKWQTH--LINPHIILSKEP-------QGFVADATI- 54 + +EITPAI ++ ++ K + + S + T+ Sbjct: 3 VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 T L A G E++Y I+ + + R + K + K + + + +A Sbjct: 63 MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHSGKGSRHASHEA 112 >UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales RepID=D0LFC2_GORB4 Length = 270 Score = 65.2 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Query: 6 TSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATINTPNG 59 + + +EI R +V D+LA+LE++ + + L+ E + T Sbjct: 66 SGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITATGKGP 125 Query: 60 VLVASGKHEDMYTAINELINKLERQ 84 ++ A E+ Y A+ ++KLE + Sbjct: 126 IVRAQACGENFYAALEGSLDKLESR 150 >UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE Length = 117 Score = 65.2 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 M + + + +T A R+ + R K+ + + L + LS++ VA+AT+ Sbjct: 1 MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPSIPEAQVAEATLY 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQL 85 L A + DM AIN +L +Q+ Sbjct: 61 LKGVTLRARAEAGDMGHAINLCEEQLFKQV 90 >UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8 Tax=Chlorobiaceae RepID=B4S5H7_PROA2 Length = 110 Score = 65.2 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF----VADATINTP 57 + +T + I Q+ D + L+K + +IN H+IL + + +A+ T++ P Sbjct: 12 NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVP 71 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 VLVA AI+ ++ + RQL K + K +A + Sbjct: 72 QQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAHK 110 >UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment) n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL Length = 192 Score = 64.8 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + + E++P R H+ +LAK+E+ +++S EP + T+ Sbjct: 1 MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRQSGSSEKVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINEL 77 V+ A +D Y A++ Sbjct: 61 VDKGPVIRAEACADDAYAALDVA 83 >UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorobiaceae RepID=Q3B2F4_PELLD Length = 130 Score = 64.8 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV----ADATINTP 57 T+ +T + AI ++ + L K ++ H+IL + F A+ T++ P Sbjct: 35 TIKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEKNKNAEITLHVP 94 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 +A I+ ++ L RQL K + K Sbjct: 95 QHDFIAKESGTAYELCIDACVDALGRQLQKYKEK 128 >UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella burnetii RepID=A9KBC8_COXBN Length = 183 Score = 64.8 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 1 MTM--NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADA 52 M + IT + ++ TPAI + + KL ++ +I+ HI++ + Sbjct: 6 MQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRI 65 Query: 53 TINTPNGVLVASGKH-EDMYTAINELINKLERQL 85 + P + ED+Y AI + + + R++ Sbjct: 66 NLTLPGKEFAVNRNEVEDLYVAIRDAFDDMARKV 99 >UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT Length = 126 Score = 64.4 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATINT 56 + + + +T A++ + + +L + + + I + + PQ F A I Sbjct: 12 KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRVHSGPQMFNAKGIIEL 71 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 ++AS ED Y +++ LI KL+R + K + RR A + + +E Sbjct: 72 RGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALKGRRHAD--EPLAVIAAAPDE 126 >UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFI2_KYTSD Length = 245 Score = 64.4 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + +T ++ ++T R+HV ++L +L + ++ + EP + T Sbjct: 1 MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRRSEDAERIEITC 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 + V+ A E Y A++ ++ K+ ++ +L + + + Sbjct: 61 HDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVHKGR 104 >UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBI5_9PORP Length = 403 Score = 64.0 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINTP 57 ++I S Q + + A++ ++ +L ++ + I L + +G +A + P Sbjct: 309 NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKIAAIRLFVP 368 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQH 90 A AI+E I+ L+RQ+++ + Sbjct: 369 GHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE 401 >UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S30EA n=10 Tax=Sphingomonadales RepID=C8WD98_ZYMMN Length = 200 Score = 64.0 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFV-ADATINT-P 57 M + I+ Q++ A+R++V D L+++ K+ ++ + + D I+ Sbjct: 1 MDIRISGHQIDTGAALREYVNDHLSQIVSKYFPKCLSASVTFGNRRHAIISCDIIIHAMR 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + +L ASG +D + A ++ K+E+QL + + + R Sbjct: 61 DIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQTR 98 >UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Campylobacterales RepID=Q30TL0_SULDN Length = 109 Score = 63.6 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +K + ++ + H+ +A +K+ + ++ L KE +G + + I+ + Sbjct: 1 MNVQVHAKDITLSANAKGHIETAIAAFKKYSLDITTVNVNLKKEKKGVLVEFDIHIAHSE 60 Query: 61 -LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 +V + ED+ TAI+ I++ + L +L + + +A TS+K+ VEE Sbjct: 61 PVVINQADEDLDTAIDLAIDRASKALRRLHDRVVSHKA-TSLKEIEVVEE 109 >UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Orientia tsutsugamushi RepID=B3CQ21_ORITI Length = 116 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 7/108 (6%) Query: 1 MTMNITS--KQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQG----FVADAT 53 M + I+ + + + Q+V ++ + K+ +L P++ SKE + Sbjct: 1 MNIIISGSPQYNSVKFNLNQYVNRKIINVANKYFDNLKAPNVHFSKEEHNQFKCHIVVNP 60 Query: 54 INTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 I + ++ ++G D++ + + KLE+QL + + K + + A + Sbjct: 61 ITKQHRIINSTGYSNDVFASFDLARVKLEQQLRRYKSKLKDKHAKVKI 108 >UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms RepID=A1SY46_PSYIN Length = 189 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 16/118 (13%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS------KEPQGFVADATINT 56 + IT + M + A+ H+ +++AKL+++ H++ H+++ ++ + F + Sbjct: 5 LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64 Query: 57 PNGVLVASGK------HEDMYTAINELINKLERQ----LNKLQHKGEARRAATSVKDA 104 P+G L+ + HED Y AI + + RQ + K + K + K + Sbjct: 65 PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTHETPDHGKIS 122 >UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RH54_9RHOB Length = 192 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 11/103 (10%) Query: 4 NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-----ADATINTPN 58 +T K ++ + AI V +R+ KLE +I + + + D ++ P Sbjct: 6 EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKGTEYIIDISLQMPG 65 Query: 59 GVLVASGK------HEDMYTAINELINKLERQLNKLQHKGEAR 95 L H D+Y AI + N +ERQL + Q + + R Sbjct: 66 STLHIDRHPGDDHAHTDIYVAIRDAFNAMERQLRRWQDQHKGR 108 >UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation protein n=4 Tax=Actinomycetales RepID=Q2JEZ4_FRASC Length = 267 Score = 62.5 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + + + + R HV +LAKLE+ +++I + LSKE + T+ Sbjct: 1 MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRLSDVCDRVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + V+ A D Y A++ KL +L + + A + + V Sbjct: 61 YSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRHHANHAGAKPTGITSVP 117 >UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNT4_9BACT Length = 126 Score = 62.5 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 7/108 (6%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE------PQGFVADATIN 55 + I + +E+T +++ V + + KL + + + + L E F+A + Sbjct: 6 NVEIVGRHLELTESLKAKVNEVVEKLYEHDSGITRIRVELEMELHSKTHQNEFIAKGHVV 65 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLN-KLQHKGEARRAATSVK 102 + AS +D+Y AI L KL+R + K + + RR + ++ Sbjct: 66 DRHDHFDASALGDDLYQAIGSLAEKLDRLIRNKSRRRVTQRRNLSPIE 113 >UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa RepID=D2NS77_9MICC Length = 213 Score = 62.1 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ----GFVADATINTP 57 +NI + +++T + ++V D++ K + ++ + + SK+ + T+ Sbjct: 4 EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHLGGESIRVEITVVGT 63 Query: 58 NGVLVASGKHEDMYTAINELINK 80 VL + + D + +E K Sbjct: 64 GPVLRSEAQGHDKFAVFDETYGK 86 >UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magnetospirillum RepID=Q2VZ29_MAGSA Length = 158 Score = 61.7 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 18/111 (16%) Query: 1 MTM--NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHII----------LSKEPQGF 48 M + IT ++ + A+ + +++AKLE + + ++ L + + F Sbjct: 39 MQIPLQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVIEQHHKNTSNLHHKGEPF 98 Query: 49 VADATINTPNGVLVASGK------HEDMYTAINELINKLERQLNKLQHKGE 93 + P LV +ED+Y A+ E +ERQL + + Sbjct: 99 HIRLALTVPGDELVVKRDPKDSHVNEDIYVALREAFAGMERQLKEYVDRSR 149 >UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V5D5_9AQUI Length = 158 Score = 61.7 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 32 THLINPHIILSKEPQGFVADATINT-----PNGVLVASGKHEDMYTAINELINKLERQLN 86 +N + E I+ GV+ A + D+YTAI+ +++++ERQL Sbjct: 8 EDSVNVRVTYDFEKHRHRNRVDIDIYFNTPGGGVIHAWEESNDLYTAIDFVVDEVERQLV 67 Query: 87 KLQ-HKGEARRAATSVKDANFVEEVEEE 113 +L+ + E RR +K+ E + EE Sbjct: 68 RLKARRVEERRRLAKLKEKEKREGIVEE 95 >UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSP2_9BACT Length = 98 Score = 61.3 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S + + + + V ++ KL+++ I +IL + VA ++ Sbjct: 1 MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGE 93 P LVA + + A++ I L+RQ++K + + E Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLE 97 >UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides RepID=D2EW39_9BACE Length = 99 Score = 60.9 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S + + ++ V ++AKLEK+ + + L + A + Sbjct: 1 MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 PNG A+ + A++ + LE+QL K + K ++ Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRSK 99 >UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLA7_9PLAN Length = 104 Score = 60.9 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 17 RQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-ADATINT-PNGVLVASGKHEDMYTAI 74 ++ +++++ KL + + + + + E + + VA+ + A+ Sbjct: 6 QETISEKVQKLTRLFERITSVDVTVDLEHNDKPGVELRVTAERTDDFVAADSCSSLLGAL 65 Query: 75 NELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + I+K+E+QL K + + + R +KD V + E Sbjct: 66 DNSIHKMEQQLRKHKERLKDHR-GPGLKDQAAVNSPDSE 103 >UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DL86_AZOVD Length = 189 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 16/124 (12%) Query: 1 MT--MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADA 52 M + I Q+E +PAI H+ ++ +LE++ +I + + Sbjct: 1 MQKPVQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHQGRLYQVKV 60 Query: 53 TINTPNGVLVA------SGKHEDMYTAINELINKLERQLNKL--QHKGEARRAATSVKDA 104 + P+G + + HED Y AI + + RQL + + E + + ++ Sbjct: 61 HLTLPDGDIHSSQAHHDEHAHEDPYVAIRDSFRAVRRQLEDYARKRRAEVKSHEPAQQEG 120 Query: 105 NFVE 108 E Sbjct: 121 RVSE 124 >UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB Length = 190 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 14/106 (13%) Query: 1 MT--MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADA 52 M + +T + M+ A+R + R+ +L+ + + H+ L Sbjct: 1 MQTPLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRQGNLYEVTI 60 Query: 53 TINTPNGVLVASGKHEDMYT------AINELINKLERQLNKLQHKG 92 + P LV D+ AI + +ERQL + + Sbjct: 61 ELRVPGTELVVHPTKGDVPAHEHPQVAIRDAFTAIERQLRAHKQRI 106 >UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4 Tax=Bacteroidetes RepID=A2U255_9FLAO Length = 100 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 MT+N +E + + + ++L KL ++ + E G + + ++ Sbjct: 1 MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTSSDNTGMICNIRLS 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 P L A H++ ++INE + L+ QL K + K Sbjct: 61 VPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDK 96 >UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP Length = 126 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 5/101 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATINT 56 + ++ +E+TP+++ V ++ +L + + +I + L + + F A + Sbjct: 8 EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEI 67 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 L A + ++ + AI+ LI+KL+R L+K H + RR Sbjct: 68 HGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRH 108 >UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplasma marginale RepID=B9KIL8_ANAMF Length = 104 Score = 59.8 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHL--INPHIILSKEPQGFVADATINTP 57 M + IT + + T +I+ +V D + + L K+ IN ++++KE F A +I+ Sbjct: 1 MNVIITCRGYKATASIKSYVEDSISSHLGKYLHDSPQINVRVVMAKEAHMFTACVSIHED 60 Query: 58 NGVLV-ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + V AS E +Y A++ + + L K + + + + Sbjct: 61 HHEFVNASKSAETVYKAVDAAVTHVANGLRKYKEEKTDKNHTAN 104 >UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ2_9BACT Length = 114 Score = 59.4 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S Q +T ++ + + AK+ K+ ++ +IL IN Sbjct: 1 MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 P + ++ + + RQL+K + K ++A K Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQRGKKADPIRK 106 >UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5 RepID=B3RGS8_9CAUD Length = 105 Score = 59.4 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATI-NTPNG 59 M + IT +EIT + ++ +++KLE+ + + E A I + Sbjct: 1 MQIEITG-NVEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNSGK 59 Query: 60 VLVASGKHEDMYTAINELINKLERQLNK 87 ++A K D Y A + +++ RQL K Sbjct: 60 EVIAKAKGSDAYEATDRMVDVAARQLAK 87 >UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax=Anaplasma centrale str. Israel RepID=D1AUL6_ANACI Length = 197 Score = 59.0 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTH--LINPHIILSKEPQGFVADATINTP 57 M + I + + T +I+ +V + + + + K+ IN ++++KE A +I Sbjct: 1 MNIIIACRGYKATASIKSYVENSIISHVGKYLRDSPEINARVVMAKEAHMLTACVSICED 60 Query: 58 NGVLVASGKHED-MYTAINELINKLERQLNKLQ-HKGEARRAATSVKD 103 + V + K D +Y A+++ + + +L K + K + R +V+D Sbjct: 61 HHEFVKASKSADTVYKAVDDAVAHIASKLRKYKGEKIDRHRKLRAVRD 108 >UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhizobiales RepID=A9CX73_9RHIZ Length = 181 Score = 59.0 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 10 MEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTP-NGVLVASGKH 67 MEI + R + D ++ + K+ + H+ + K F AD I+ VL A+G+ Sbjct: 1 MEIGESFRTRIDDHVSGAVRKYFDGGFSSHVTVEKSGSRFQADCKIHLDTGVVLHATGEA 60 Query: 68 EDMYTAINELINKLERQ 84 +D A + ++E++ Sbjct: 61 QDPQPAFDAAAERIEKR 77 >UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Actinobacteridae RepID=D2RAS6_GARVA Length = 223 Score = 59.0 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + IT + +I R V ++ ++ I+L+ E + T+ Sbjct: 1 MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPRQADTAKRVEITV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELIN 79 + V+ A D ++A++ ++ Sbjct: 61 VAGSTVIRAEASSTDQFSALDMALD 85 >UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Bifidobacterium RepID=B8DT99_BIFA0 Length = 228 Score = 58.6 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + +T + ++I R V ++ ++ ++LS E + T+ Sbjct: 1 MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRLHDTAVRVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKL 81 + V+ A D +A++ ++KL Sbjct: 61 VAGSTVVRAEASSLDEVSALDLALDKL 87 >UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT Length = 155 Score = 58.6 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE------PQGFVADATIN 55 + ++ +E+TP+++ V ++ +L + + ++ I L + Q F+A + Sbjct: 38 ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 AS + + A+N L+ KL+R + + + +R TS Sbjct: 98 INGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRFFKVQRHRTSA 143 >UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales RepID=C6II14_9BACE Length = 123 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S + + ++ + +++KLEK+ + + L + A I Sbjct: 25 MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 PNG AS + A++ + LE+QL K + K ++ Sbjct: 85 PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRSK 123 >UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD Length = 125 Score = 58.3 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADATI 54 M + + + + P + + +L KL+ + + + + L + + Sbjct: 1 MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 P G + + A + I+ L+ Q+ K ++K RA + Sbjct: 61 YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNNARAPKVAE 108 >UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes RepID=C6Y270_PEDHD Length = 115 Score = 57.9 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + + S + + ++ KL+++ +I+ + L E +++ + Sbjct: 1 MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P G + A + + A + I L +Q+ K + K + Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTRIK 99 >UniRef50_A2TTF7 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=4 Tax=Bacteroidetes RepID=A2TTF7_9FLAO Length = 103 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 4/93 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M + I +++ + A+ ++ D+L KL K LI ++I+ KE + + ++ Sbjct: 1 MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKETAQTHHNAICEIELSV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 P + A + ++ A+ E I+ L+ QL K + Sbjct: 61 PGPRIFAQSQEKNFEVAVKETISDLDVQLKKRK 93 >UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=5 Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1 Length = 179 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG-----FVADATIN 55 M + IT+K + R ++ ++ ++ + + I L +E F+ AT+N Sbjct: 1 MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRSQADHFILKATLN 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVK 102 T VL A + E++ TA + + L +Q++ + K E + R S++ Sbjct: 61 TGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKMEVKARNRESIR 108 >UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUF5_CHIPD Length = 99 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 5/96 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-----VADATIN 55 M + I + + + HV+ +L KL + +I+ + L + +A+ ++ Sbjct: 1 MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHQVKDKIAEIKVH 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 P L + + + + + + Q+ K + K Sbjct: 61 IPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK 96 >UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12 Tax=Flavobacteria RepID=A0M3Z9_GRAFK Length = 100 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M MN+ S + +L KL+ + +I+ + + + + + ++ Sbjct: 1 MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P G ++ ++E ++ L+RQL K + K A Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99 >UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZQ7_9FLAO Length = 100 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATIN 55 M +N + + + + V +L KL+ ++ + E G + + ++ Sbjct: 1 MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMICEIKLS 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P L AS + AI I+ ++RQL K + K + Sbjct: 61 APGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100 >UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCB56 Length = 57 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV 49 M + ++ +QM++T I+ +V +L++LEK+ + +S + Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQK 49 >UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula baltica RepID=Q7UMU4_RHOBA Length = 113 Score = 57.1 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-VADATINT-PN 58 M +N++++ + P + V ++ KL + + + + E + I+ + Sbjct: 1 MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L+A + + A++ I K E+QL KL+ K RA Sbjct: 61 DDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEHRATAH 102 >UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZU16_OPITP Length = 131 Score = 57.1 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG----FVADATINTP 57 + I ++ +T A+R + + +L + + +I + L +E + FVA I Sbjct: 12 KLVIRGIRLWLTDALRSTIETKAERLFRHEPRIIRVRVDLDREHRNGVALFVAKGRIELH 71 Query: 58 NGVLVASGKHEDMYTAINELI 78 L+AS D Y +I+ LI Sbjct: 72 GPDLLASVVSNDAYKSIDWLI 92 >UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G3G6_SORC5 Length = 191 Score = 57.1 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 50/108 (46%), Gaps = 11/108 (10%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP------QGFVADATI 54 M + +T + + +P++ + + ++ K+E++ H+ + +++ ++ + + Sbjct: 1 MQVELTFRHIGKSPSLEELIREQANKIERFNDHINSCAVVVERDHASMGTGGEYRVRVDL 60 Query: 55 NTPN-GVLVASGKHED--MYTAINELINKLERQLNKL--QHKGEARRA 97 + +V+ + + A+ ++ + RQL KL +H+ E + Sbjct: 61 HVAGKHEIVSEERAARNLLPAAVRDVFQRAGRQLKKLADEHRSEVKAH 108 >UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntrophobacterales RepID=A0LQL3_SYNFM Length = 176 Score = 55.9 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 7/112 (6%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADATINT 56 + I++ + I+ A + + ++ KL++ LI + + + + Sbjct: 5 LEISAHNVHISDATEELIREKAEKLDRINDKLIGCRVRVEIPHRSQRSGILYSVRIELAV 64 Query: 57 PNGVLVASGK-HEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 P +V + ED++ AI +R+L ++ K + V Sbjct: 65 PGRDIVIKREPDEDLHAAIVGSFETAQRRLKEVAEKQRGEVKYHEERPVARV 116 >UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3V7_9NEIS Length = 181 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 45/102 (44%), Gaps = 13/102 (12%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIIL------SKEPQGFVADATINT 56 + I + + + A+ H+ +L KLE++ LI ++ + S + + + + Sbjct: 5 LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVGLPHRHSNQGEHYFVQIDMTA 64 Query: 57 PNGVLVA-SGKHEDMYTAINELINKLER------QLNKLQHK 91 P +V+ HED+Y A+ + + R ++ + + K Sbjct: 65 PGTEVVSNRQNHEDVYVALRDAFDAARRMLEDHVRIRRGETK 106 >UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Actinomycetales RepID=A0LVS3_ACIC1 Length = 322 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 5 ITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATINTPN 58 +TS+++E+ +R +V ++LAK+EK +I + +S+E + T + Sbjct: 1 MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRLADSCERVELTCISAG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + A E M A + KLE +L K + R + Sbjct: 61 PPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVHRGNRA 102 >UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae RepID=C6X055_FLAB3 Length = 96 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M +++ S + + +H+ +L+KLE + ++ + L E + A+ + Sbjct: 1 MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVENKSDKENKTAEIILAV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQH 90 P +V ++++ +R L K + Sbjct: 61 PGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE 94 >UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIV0_9BACT Length = 115 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + S+ ++ ++ + + + K + + L +IL+ + I + Sbjct: 1 MEIIVASRHFKVQKDVKTQIVEEMKKFDTCASKLTTAEVILNNIHHNIHVEIIIRGKHLN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 + + +D+ + K+ QL+K + K + RA Sbjct: 61 CKSEAETDDLLKSFYLAFKKMRNQLDKRRTKVKNHRAK 98 >UniRef50_A3U9H3 Site-specific recombinase, phage integrase family/ribosomal subunitinterface protein n=3 Tax=Flavobacteria RepID=A3U9H3_9FLAO Length = 100 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATIN 55 M +N + + + +++ KL ++ + KE G +A+ ++ Sbjct: 1 MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENTSEPDTGMIAEIRLS 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 P L A + + A+ E+ +L+ QL K + Sbjct: 61 APGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRK 94 >UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2U9_ACICJ Length = 186 Score = 54.0 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 16/109 (14%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADATINT 56 + IT K ++ +PA+ + ++ L +++ ++ H+I+ + A I Sbjct: 5 LQITFKDIDRSPALEARIREKAEALSRFEARILRCHVIIEAPHRHHHKGKLYRARIEIAV 64 Query: 57 PNGVLVASGK------HEDMYT----AINELINKLERQLNKLQHKGEAR 95 P G +V + + HED Y A + + KLE +L + Sbjct: 65 PRGDIVINRESPENHAHEDPYVAVRDAFDAAVRKLEDHARRLDDAVKHH 113 >UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1D1Y2_MYXXD Length = 119 Score = 54.0 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTH-LINPHIIL-----SKEPQGFVADAT 53 M + + + ++ A++ +V + L + +E++ I L K T Sbjct: 1 MKVLLRGVHLNLSDALKSYVDEHLVRHIERFADDEAAEIDISLVDTNGPKGGMDKECRVT 60 Query: 54 INTPN-GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + P + + + ++ AI+ ++LE L ++ K R T+ + +V Sbjct: 61 VRLPGLSSVHVTETADSLFPAIDASRDRLETSLKRMLGK--RRDVHTNGLPEDVAVDVP 117 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap... 119 3e-26 UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C... 118 6e-26 UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D... 117 1e-25 UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari... 117 1e-25 UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot... 117 1e-25 UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3... 116 3e-25 UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst... 114 7e-25 UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot... 114 9e-25 UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=... 114 1e-24 UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P... 113 1e-24 UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot... 113 2e-24 UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot... 112 3e-24 UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot... 112 4e-24 UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3... 112 5e-24 UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ... 111 7e-24 UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be... 111 7e-24 UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3... 110 1e-23 UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost... 109 3e-23 UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3... 108 4e-23 UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3... 108 4e-23 UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio... 108 8e-23 UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3... 107 1e-22 UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits... 107 1e-22 UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo... 107 1e-22 UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid... 107 2e-22 UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm... 106 2e-22 UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3... 106 3e-22 UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr... 106 3e-22 UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c... 105 4e-22 UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation... 105 4e-22 UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac... 105 4e-22 UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot... 105 5e-22 UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo... 105 5e-22 UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ... 105 7e-22 UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3... 103 1e-21 UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo... 103 1e-21 UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil... 103 1e-21 UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein... 103 1e-21 UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria... 103 2e-21 UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida... 103 2e-21 UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3... 102 3e-21 UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium... 101 8e-21 UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ... 101 8e-21 UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 101 8e-21 UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_... 101 9e-21 UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot... 101 9e-21 UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e... 101 9e-21 UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot... 100 1e-20 UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ... 100 1e-20 UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil... 100 2e-20 UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3... 100 2e-20 UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot... 100 2e-20 UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo... 100 2e-20 UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3... 100 2e-20 UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys... 99 3e-20 UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot... 99 4e-20 UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict... 99 4e-20 UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis... 99 5e-20 UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob... 99 5e-20 UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe... 99 5e-20 UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3... 98 7e-20 UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P... 98 7e-20 UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr... 98 9e-20 UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul... 98 1e-19 UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl... 98 1e-19 UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther... 98 1e-19 UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom... 97 1e-19 UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ... 97 2e-19 UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3... 97 2e-19 UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes... 96 2e-19 UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro... 96 3e-19 UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami... 96 4e-19 UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad... 96 4e-19 UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3... 95 4e-19 UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri... 95 6e-19 UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3... 95 8e-19 UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot... 94 1e-18 UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta... 94 1e-18 UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y... 94 1e-18 UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S3... 94 1e-18 UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3... 94 2e-18 UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin... 94 2e-18 UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=R... 94 2e-18 UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia... 93 2e-18 UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri... 93 2e-18 UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot... 93 3e-18 UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3... 93 3e-18 UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri... 92 4e-18 UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter... 92 4e-18 UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic... 92 5e-18 UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri... 92 6e-18 UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3... 92 7e-18 UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG... 91 9e-18 UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3... 91 1e-17 UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation... 91 1e-17 UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3... 90 1e-17 UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium... 90 2e-17 UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation... 90 2e-17 UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3... 90 2e-17 UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2... 90 2e-17 UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R... 90 2e-17 UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid... 90 2e-17 UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot... 90 2e-17 UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3... 90 2e-17 UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu... 90 3e-17 UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax... 89 4e-17 UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)... 89 4e-17 UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg... 89 4e-17 UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation... 89 4e-17 UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3... 89 5e-17 UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea s... 89 5e-17 UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Acti... 89 6e-17 UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3... 88 7e-17 UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens ... 88 7e-17 UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3... 88 7e-17 UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3... 88 8e-17 UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr... 88 8e-17 UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S3... 88 9e-17 UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation... 87 1e-16 UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot... 87 1e-16 UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick... 87 1e-16 UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3... 87 1e-16 UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne... 87 1e-16 UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3... 87 2e-16 UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae... 87 2e-16 UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3... 87 2e-16 UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Gro... 86 3e-16 UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero... 86 3e-16 UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p... 86 3e-16 UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter... 86 3e-16 UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro... 85 5e-16 UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=... 85 6e-16 UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3... 85 6e-16 UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S3... 85 6e-16 UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=... 85 6e-16 UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida... 85 7e-16 UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3... 85 8e-16 UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba... 85 8e-16 UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax... 85 8e-16 UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A... 85 8e-16 UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3... 85 8e-16 UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor... 85 9e-16 UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation... 84 1e-15 UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re... 84 2e-15 UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R... 84 2e-15 UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M... 84 2e-15 UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chl... 84 2e-15 UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re... 84 2e-15 UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal prote... 83 2e-15 UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ... 83 2e-15 UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S3... 83 2e-15 UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kyto... 83 4e-15 UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3... 82 4e-15 UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p... 82 5e-15 UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev... 82 5e-15 UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex... 82 6e-15 UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorob... 82 6e-15 UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri... 82 6e-15 UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi... 82 6e-15 UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact... 82 8e-15 UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil... 82 8e-15 UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr... 82 8e-15 UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa... 82 8e-15 UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA 82 8e-15 UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3... 81 8e-15 UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=... 80 2e-14 UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act... 80 2e-14 UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth... 80 2e-14 UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1... 80 2e-14 UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S3... 80 2e-14 UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Prop... 80 2e-14 UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostri... 80 2e-14 UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M6... 80 3e-14 UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro... 79 3e-14 UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact... 79 4e-14 UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3... 79 5e-14 UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation... 79 5e-14 UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p... 79 5e-14 UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali... 79 6e-14 UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal... 79 7e-14 UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S3... 78 9e-14 UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S3... 78 1e-13 UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacte... 77 1e-13 UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell... 77 1e-13 UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t... 77 1e-13 UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=... 77 1e-13 UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac... 77 1e-13 UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=... 77 1e-13 UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S3... 77 2e-13 UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation... 77 2e-13 UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Camp... 77 2e-13 UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Ther... 77 2e-13 UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation ... 77 2e-13 UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw... 77 2e-13 UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S3... 77 3e-13 UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr... 76 3e-13 UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr... 76 3e-13 UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=... 76 3e-13 UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Ro... 76 3e-13 UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1... 75 5e-13 UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3... 75 6e-13 UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S3... 75 8e-13 UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3... 74 1e-12 UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip... 74 1e-12 UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr... 74 1e-12 UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chi... 74 2e-12 UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3... 74 2e-12 UniRef50_A2TTF7 Site-specific recombinase, phage integrase famil... 74 2e-12 UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavob... 73 2e-12 UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S3... 73 3e-12 UniRef50_A3U9H3 Site-specific recombinase, phage integrase famil... 72 4e-12 UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magneto... 72 4e-12 UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bactero... 72 5e-12 UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associ... 72 6e-12 UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S3... 72 6e-12 UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost... 72 7e-12 UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella bu... 72 7e-12 UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3... 71 9e-12 UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3... 71 9e-12 UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce... 71 9e-12 UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Ta... 71 1e-11 UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Act... 71 1e-11 UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl... 71 1e-11 UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Bla... 70 2e-11 UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavoba... 70 2e-11 UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax... 70 2e-11 UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplas... 70 2e-11 UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal p... 70 2e-11 UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylo... 70 2e-11 UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lu... 70 3e-11 UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal prot... 69 4e-11 UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal p... 69 4e-11 UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia muc... 69 5e-11 UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Or... 69 5e-11 UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S3... 69 6e-11 UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwen... 69 7e-11 UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho... 68 7e-11 UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum ... 68 8e-11 UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S3... 68 8e-11 UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azo... 68 9e-11 UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=... 67 2e-10 UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S3... 67 2e-10 UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reineke... 67 2e-10 UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroh... 67 2e-10 Sequences not found previously or not previously below threshold: >UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria RepID=RAIA_ECO57 Length = 113 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV Sbjct: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 >UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales RepID=Q97F93_CLOAB Length = 174 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 63/113 (55%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ++ K +E+T +R+ V +++KLEK+ + H+ LS E + + TI + Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L + DMY +I+ + +KLERQ+ K + K E R+ + S+K N + +EE Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERRKYSDSLKFQNIPDYHKEE 113 >UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA Length = 191 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 1 MTM-NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATI 54 M + ++ + +E+T +R++V ++L++L+++ + + + L+ + + + Sbjct: 1 MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 N P G++ A H DMY AI++ + LERQL K + + +R + E E Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTRYMKQRQEGRPEPLPGPAEAE 117 >UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWV9_9PROT Length = 212 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++IT + +E+T ++ +V D+L L+ H+++ H++LS E + ++ Sbjct: 26 MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-----RAATSVKDANFVEEVEEE 113 + S + EDMY +I+ +I+K+ RQL + + K R +K ++ V +V E Sbjct: 86 IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRHQGGGQREGRQIKVSHRVLDVAAE 143 >UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12 Tax=Firmicutes RepID=Q2RLX7_MOOTA Length = 190 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 56/112 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I K + +T A+RQ++A RL K+E++ + + L+ V + TI + Sbjct: 16 MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L DMY +++ ++ KLE+Q+ K + + + ++K+ + EE Sbjct: 76 LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNKKIKNGTIKEFAAGQPEEE 127 >UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Leptospirillum RepID=A3EWH8_9BACT Length = 176 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 52/113 (46%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T + MEIT AIR V +++ L++ +IL E + T++ + Sbjct: 1 MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + A D+Y +++ ++KLERQL + + K A +E V + Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIRHGHATNGQSGKPTMESVSAD 113 >UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1DDE8_MYXXD Length = 221 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 57/109 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M NIT +Q + +++++ +++ ++ + H++LS E AD TI++ V Sbjct: 1 MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 L K +DMY +I+ ++K+ERQL + + K ++ V + + E Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSHHGRERVHHRHDLVE 109 >UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6 Tax=Proteobacteria RepID=Q0ADR1_NITEC Length = 111 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+T + ITPA+R +V ++ + + +++ ++ LS + A+AT++ P Sbjct: 1 MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV-KDANFVEEV 110 + DMY +I+ L +KL RQ+ K + K +R KD F + Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEKNIRQRNDQGGLKDQEFEQPE 111 >UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular organisms RepID=RP5M_SALTY Length = 95 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NIT +EIT A+R+ V + AKLE++ + +++L E ++DAT++ G Sbjct: 1 MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + AS + +DMY AI+ LI+KL RQL + + K + Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95 >UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria RepID=RP5M_PSEPK Length = 102 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 61/102 (59%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ + +E+T +R +V ++LA++E + N +I+ E +AT+ P G Sbjct: 1 MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 +VA+ +HEDMY AI+ L +KL+RQL K + K ++ + + Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEKQQSLLQGAAAR 102 >UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM Length = 180 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 60/103 (58%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N+T + +E + +R + +++++++K+ ++ H++L E +A+ TI+ Sbjct: 1 MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 + + + +DMY+AI++L + LE Q+ K + K R+ T KD Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRRKPVTMGKD 103 >UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH Length = 113 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 55/113 (48%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT +++T A++ +V ++ +LE+ ++++ H+ILS E A+A + Sbjct: 1 MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A EDMY AI+ +I+KL+RQL K + K E Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDHHRREGAAQKAGAGAGAAE 113 >UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10 Tax=Clostridiales RepID=Q0B0B5_SYNWW Length = 181 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M I + +EIT A++ + RL+KLEK+ + + LS E + + TI + Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L +DMY++I+ + KLE+Q+ K + + +K EE+++E Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRLYRSNRGAGLKK-ALAEEIKKE 112 >UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11 Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB Length = 182 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 59/112 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +T + ME + A++ + ++L +++K+ I + L+ E +A+ TI Sbjct: 1 MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 + A+ + DMY +I+ + +K+ERQL + + + +A + A ++ + + E Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARERQVQKSIVE 112 >UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella RepID=B0TYD3_FRAP2 Length = 102 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 56/102 (54%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + +E+T AI+ +V +++ K+ + ++ + +IL E VA+A + P Sbjct: 1 MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 VA + +D+Y AI+ L +KL RQ+ K ++K A + Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRDNHATGHSE 102 >UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria RepID=Q7W3J9_BORPA Length = 112 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 63/102 (61%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++I + +++TPAIR++V ++LA++ + H+I+ ++LS EP A+ T+ Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 + E++Y AI+ L++K++RQ+ K + K ++ A ++ + Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSHSAESAKR 102 >UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia sp. EuI1c RepID=D1V7P2_9ACTO Length = 283 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + + + R HV +LAKLE++ +I + LS+EP + T+ Sbjct: 1 MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 T V+ A D Y+A++ KL +L + + + + +V Sbjct: 61 YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDHKHGNNGHGRAYVGPPP 117 >UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I442_9CLOT Length = 178 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 54/113 (47%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++ +K TPA+++ + +L+K++++ + LS + + TI + Sbjct: 1 MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A EDMY +I+ ++ KLERQ+ K + K R + + +E Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRRNNESLRFPQLDEVALSDE 113 >UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12 Tax=Clostridia RepID=B0K3A9_THEPX Length = 181 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQ-MEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + ++ K M +T +R V ++KL K+ +LS + +A+ TI Sbjct: 1 MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A +DMY +I+ +++K+E+Q+ K + K + R Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96 >UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134 Tax=Bacteria RepID=B8CYM6_HALOH Length = 184 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQGFVADATINTPNG 59 M + K +++TPA++++ ++++KL K+ HI + E + + T Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 +L + +DMY +I+ ++ KLERQ++K + K + + Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKINRKIRERKQE 103 >UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGY6_9BACT Length = 177 Score = 108 bits (270), Expect = 8e-23, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 51/85 (60%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT++ +E+T AIR + +++KLEK+ ++ + +++L + + + ++ Sbjct: 1 MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60 Query: 61 LVASGKHEDMYTAINELINKLERQL 85 + K ED+Y +I+ ++K+E+QL Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85 >UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Anaeromyxobacter RepID=A7HIE3_ANADF Length = 185 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 50/100 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NIT + +E T A++ HV R+ ++++ H +L E A+ T+ + Sbjct: 1 MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L + + DMY +I++ +K+ERQL K + K + Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNHYKSNG 100 >UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ3_9FIRM Length = 181 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV- 60 T + K +EITP++R++V R+ K+ K+ + + ++L+ + + T+ P G+ Sbjct: 3 TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIL 62 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 L DMYT+I+ ++ KLERQ++K + K R + K Sbjct: 63 LRGEESTMDMYTSIDLVVEKLERQIHKQKTKLARRLRSGQFKTEELKSSPM 113 >UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI17_THEYD Length = 173 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 1/112 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I K +++T A++Q++ R+ K E++ T + +S E D + + Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK-DANFVEEVE 111 + A GK ED+Y+A+++++ KLE+Q+ K + K + + ++K + EEVE Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQNKNKKETIKYPSALSEEVE 112 >UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIZ4_ACIFE Length = 181 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + K +E+T A++ +V R+ + K + ++ E + T+ V Sbjct: 1 MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L A ++MY +I++ + K+ERQ++K + + +R ++ KDA E+ Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRL-MKRKYSNFKDAAPAPLPED 111 >UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria RepID=B5JSL3_9GAMM Length = 117 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPN-- 58 M +N+T +++T A+R +V D+ +LE+ H+ H+IL E A+A ++ P+ Sbjct: 1 MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 G L A +HEDMY AI+ L++KL+RQL K + K Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDHHKRE 101 >UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSN7_9PROT Length = 202 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQGFVADATINT-PN 58 M +++ KQ+++ +RQ + + + K+ + I + LS++ F AD ++ Sbjct: 10 MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + A G+++D Y A ++E+QL + + + S + V Sbjct: 70 ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDHHKGHSGDVVPAAQYV 121 >UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria RepID=RAIA_HAEIN Length = 107 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 67/104 (64%), Positives = 83/104 (79%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MT+NITSKQM+ITPAIR+H+ +RLAKL KWQT LI+PH +L+K P GF +A+I TP G Sbjct: 1 MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L+AS +DMY AINE+ KLERQLNKLQHK E+RRA +KD+ Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESRRADERLKDS 104 >UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms RepID=RP5M_RALEH Length = 116 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 M I+ ++ITP +R++V +L ++ + +I ++LS + A+ ++ Sbjct: 1 MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 + HED+Y AI+ L++KL+RQ+ + + + + + Sbjct: 61 LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHDREAVKYQMAAAQ 113 >UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98 Tax=Gammaproteobacteria RepID=A1RNM6_SHESW Length = 95 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 57/95 (60%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +EIT ++R +V ++ +KLE+ + N H++L+ E +A+A IN G Sbjct: 1 MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A+ +H DMY AI+ LI+KL+RQ+ K + K Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95 >UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli RepID=Q71WR7_LISMF Length = 187 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHL--INPHIILSKEPQGF-VADATINTPN 58 NI + +E+T IR +V ++ KLE++ T N H+ L + TI PN Sbjct: 3 KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNAKVEVTIPLPN 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 VL A D+Y +I+ +++KLERQ+ K + K + + F Sbjct: 63 LVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGAERDYFA 111 >UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Proteobacteria RepID=Q122P6_POLSJ Length = 109 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATIN 55 M + I+ +E+TPA+R +V +L ++ + +++ ++L+ + + A+ ++ Sbjct: 1 MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 L A H D+Y A++EL +KL+RQ+ + + K + + + A Sbjct: 61 VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDHHHVAAKRQA 109 >UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium RepID=C9XLM7_CLODC Length = 187 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADAT-INTPNG 59 M + ++ +QM++T I+ +V +L++LEK+ + +S + + T I Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 ++ A +D+Y AI+ + +KL RQ+ K + K + + Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDK 96 >UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCZ2_9FIRM Length = 180 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 1/108 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 MT+ + K +E+TPA++ +V ++ + K + ++ E + + T+ V Sbjct: 1 MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 L A E+MY +I+ + K+ERQ++K + + +R + +DA Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRL-MKRKYNNFRDAAVPP 107 >UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1 Length = 207 Score = 103 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-GFVADATINTPNG 59 M ++T +Q E T A++++ DR+ +++K+ I+ H+++S E D T+ NG Sbjct: 1 MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60 Query: 60 VLVA-SGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + VA E M+++I+ + K+ERQ+ + + K + + + V Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTHKVKNHIPSVPWSHTV 112 >UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FF9 Length = 104 Score = 103 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 52/104 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT ++ITPAI ++ + K+E + LIN LS E VA++T++ P Sbjct: 1 MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 + A DMY AI LI KL+ Q+ K + K S ++ Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNHHKLESPRNQ 104 >UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUS0_9FIRM Length = 176 Score = 103 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 58/111 (52%), Gaps = 1/111 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + K +++ ++ + +KL+K+ + + SK+ G + TI P + Sbjct: 1 MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVKDANFVEEV 110 L A +DM+ +I++ ++KLERQ+ K + + + R + +++ NF +E Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKRYQNNETIRFDNFDKEP 111 >UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJD6_9BACT Length = 178 Score = 103 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 52/105 (49%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT++ E+T AIR +V +KL K+ +I H +L+ E + + +++ Sbjct: 1 MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 L + + DMY AI+ + K+E Q+ KL+ + + + Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDHQKRALKQQFE 105 >UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2 Length = 193 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTH-LINPHIILSKEPQ-----GFVADATI 54 M + I + +T +I +V +L K K + LS A+ T+ Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 V+ A E++Y +I+ + +K+ RQL K + K ++ K + + E Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDP 117 >UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MED7_PARUW Length = 211 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 53/98 (54%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVL 61 + IT + +EIT +++ + ++++K+E++ +I+ ++I+ + + + + + Sbjct: 16 NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKI 75 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 + DMY +I++ I +LE Q+ + + K + A + Sbjct: 76 QSQAATPDMYASIDKAIARLEAQIRRYKSKIQDHHAKS 113 >UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD Length = 180 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 8/121 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLIN--PHIILSKEPQGFVADATINTPN 58 M + + +T A++ +V ++A+L ++ + ++ ++ E + T+ Sbjct: 1 MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR------RAATSVKDANFVEEVEE 112 + A K DMY +I+ +KLE Q+++ + K R R D + V E ++ Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDAVAETDD 120 Query: 113 E 113 E Sbjct: 121 E 121 >UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium RepID=C9XIR4_CLODC Length = 183 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATI-NTPNG 59 M + I+ KQ+E+T AI+ + +L+KL+ + + + +S + TI Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA-TSVKDANFVEEVEEE 113 ++ A E++YTAI+ + +KL +QL K + + + + S++ + + +E Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSIRFQDSEINLADE 115 >UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSN2_SYNAS Length = 209 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 55/110 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++T + E Q+V DR+ +L K+ + H++L+ E VA+ ++ T Sbjct: 31 MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 L+ + +DM+ AI+ + K+ERQL K + K + T ++ E Sbjct: 91 LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGYKNNTMKEEETIEAEA 140 >UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ65_DESAH Length = 179 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++T KQ++ + A++ +V ++ + +K +++LS E +A+ T+ Sbjct: 1 MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT--SVKDANFVEEVEE 112 + A + E+MY++I+ L++K+ Q+ K + K + S+KD + + E Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRHMSGNKASIKDNDILLTPPE 114 >UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB Length = 209 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLI-NPHIILSKEPQG-----FVADATI 54 M + I K ++IT IR ++ ++ + ++I + LS A+ T+ Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 V+ A E++Y +I+ + +K+ R+L KL+ K + + KD N V E E Sbjct: 61 FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEKRQDKSR---AKDTNSVVEPE 114 >UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46 Tax=Bacteria RepID=Q28VX1_JANSC Length = 235 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M I+ KQ+EI A++ HV D L + +K+ + ++ SK F + T++ Sbjct: 45 MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 A ++Y A +KLE+QL + + + + + Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDHHKDRA 146 >UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FNI8_SACEN Length = 231 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 6/119 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + + + +E+ RQHV ++L +LE++ I + L E + T+ Sbjct: 1 MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + A D Y A++ KLE +L ++ + + + + Sbjct: 61 KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVHYGQHNPTSVAQATAAMAD 119 >UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM Length = 209 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 2/112 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + + SK ++++ A+R+ + R+ + K+ ++ +S+E GF + +++ P+G Sbjct: 1 MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60 Query: 60 V-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 V L A G+ +D Y A + +LE++L + + K + + + Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNHHNDNKAELPAESLPI 112 >UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ Length = 192 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINP--HIILSK-EPQGFVADATINTPN 58 I + IT AIR ++ D++ KLE++ + N H+ + + + TI N Sbjct: 3 RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKN 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L A +H+D+Y I+ + +KLERQ+ K + + R+ T + FV EV+E Sbjct: 63 VTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVN-RKHKTHGEPEAFVAEVQE 115 >UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales RepID=RAFY_STRP6 Length = 182 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGF-VADATINTPN 58 +I + +E+T AIR +V +L K+EK+ I+ + L + + TI + Sbjct: 3 KFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDS 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A +DMY +I+ +++K+ERQ+ K + K + F E E E Sbjct: 63 VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKVPTGQVFTTEFEAE 117 >UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21 Tax=Betaproteobacteria RepID=A9BRS9_DELAS Length = 119 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATIN 55 M + I+ +E+TP++R +V +L ++ + +++ ++L+ + A T+ Sbjct: 1 MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANF 106 L H D+Y A++ L +KL+R + + + + + R ++ + + Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQGSRYGSAKRLDDA 111 >UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Psychromonas RepID=A1SRN9_PSYIN Length = 136 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 53/110 (48%), Positives = 70/110 (63%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ITSKQ+ IT +R V +R KLEK Q LI PH+I++KEP+G +ATIN PN Sbjct: 1 MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + A +++D+Y AI +L KLERQL K HK EA RA + KD E+ Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKYLHKSEASRAKNNGKDMCRTGEI 110 >UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BX30_HYPNA Length = 198 Score = 99.7 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M + IT + ME+ A+R + + L + K+ + + ++ +S++ D ++ P Sbjct: 1 MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 VL +SGK D Y A+ + K+E+++ + + + + + A EV E Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDHH---TNGQAALPAEVAAE 112 >UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ Length = 178 Score = 99.7 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 3/115 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEK--WQTHLINPHIILSKE-PQGFVADATINTP 57 M IT K +EI+ AI+ ++ RL K+++ + L++ ++ + K+ +V +N Sbjct: 1 MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 ++ +H D+YTAI+ + LE+Q+ +L+ + + +S +EE E Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNHPHRSSALVETPLEEPGE 115 >UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae RepID=C8P3U4_ERYRH Length = 180 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M + I K +EIT A+++ V ++L L K+ +++++ PQG + TI + Sbjct: 1 MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 G L A HED Y A++ +++KLE Q+ + + K + Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISRKNRE 100 >UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3 Tax=Psychrobacter RepID=A5WCB7_PSYWF Length = 132 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 15/128 (11%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----------PQGFVA 50 M ++IT + IT A++ V D+L+K+E+ + + +ILS + A Sbjct: 1 MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKG-----EARRAATSVKDAN 105 +A + + +DMY AI+E+ +KL+RQ+ K + + ++R V Sbjct: 61 EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRIDRKTRSSKRRERLVASLP 120 Query: 106 FVEEVEEE 113 VE EE Sbjct: 121 IVEPAAEE 128 >UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus RepID=B5YF17_DICT6 Length = 179 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATIN 55 M +N SK + IT ++Q+ +L++L ++ ++ N ++ S+E + + TI Sbjct: 1 MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVKDANFVEEVEEE 113 ++ AS ++D T+I+ +++KLE QL +L+ K + R A S+++ +EVEE+ Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVDKGRRAESIREILAEKEVEEK 119 >UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae RepID=C6M3U2_NEISI Length = 104 Score = 99.0 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 51/97 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT ++T AI+ +V+++L ++ + + I+ I LS E A+A I+ Sbjct: 1 MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 L +DMY AI+ L++KL+R + K + K R Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEKSGDVRN 97 >UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria RepID=A5CWW3_VESOH Length = 102 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 54/98 (55%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ ++IT AI+QH +L K++ +IN ++IL + A+A I+ Sbjct: 1 MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 L A + DMY +I++++NKL+ Q+ K + K R Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNHRKK 98 >UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B9Y7S1_9FIRM Length = 178 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M I K + IT A+RQ + +L+ L+K+ +++ P + TI T Sbjct: 1 MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 G+L +HED+Y AI+ I+KLE Q+ + + + R Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRRHREK 101 >UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE Length = 191 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQGF-----VADATI 54 M++ +T ++M +T A+R++ +++ K + I+L E V + T+ Sbjct: 1 MSITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPANPRPAVCEVTL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 T ++ EDMY AI+ K+ RQL K + K R+ + + E Sbjct: 61 RTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDRKLRAADETIRIEPSAAGE 119 >UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus marinus RepID=A2C0K6_PROM1 Length = 194 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTH-LINPHIILSKEPQG----FVADATIN 55 M + I + +E+TP++R + ++ K + + LS A+ T+ Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 V+ A + E++Y +I+ + NKL RQL K + + + + + E Sbjct: 61 ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHNNQSTKSVQNE 114 >UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y948_COPPD Length = 190 Score = 97.8 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 56/107 (52%), Gaps = 4/107 (3%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG----FVADATINTP 57 +++ K +E+T AI+Q++ +++ ++ ++ ++ +++ KE Q F + T++ Sbjct: 8 KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDAN 67 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 ++ A + D+Y AI++ +KLE + + + K R V+ Sbjct: 68 GRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKLFDSRQGGKVEKT 114 >UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae RepID=B4RCJ5_PHEZH Length = 222 Score = 97.8 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 2/100 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M + +T K +++ A+R VAD L+ +EK+ +++S+E F D + Sbjct: 13 MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 L G D + A + + K+++++ + + + + Sbjct: 73 QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDHSPQ 112 >UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA Length = 212 Score = 97.8 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 51/98 (52%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVL 61 + +T + + +T A++ + ++++K+++ +I+ I + + D + + + Sbjct: 16 NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKI 75 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 + +DMY +I++ ++KLERQL K + + +A Sbjct: 76 KSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDHQAKK 113 >UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae RepID=Q5SIS0_THET8 Length = 186 Score = 97.8 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%) Query: 1 MTM-NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-----VADATI 54 M + + + +EIT AIR +V +LA+L+++Q + ++LS A+ + Sbjct: 1 MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKG---EARR----AATSVKDANFV 107 + P G++ + D+Y AI+ +++LE Q+ + + + + V+D + Sbjct: 61 DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQGPPPPEVRDLEAL 120 Query: 108 EEVEEE 113 + EEE Sbjct: 121 RKPEEE 126 >UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEC8_9ACTO Length = 214 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + + ++ EI P R++V ++++K+ ++ + L+ E + T+ Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 ++ A + D Y A++ KL +L +L+ + + R Sbjct: 61 YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRR 104 >UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation protein family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G806_SORC5 Length = 122 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + M T A++ + +++AKL+K+ + + LS E VAD +++ + Sbjct: 1 MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 A+ + EDMY +I+ + +KLERQ+ + AR+ + + EVE E Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIRDGKGHTIARKRGGTSA-GEYAVEVERE 112 >UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Fusobacteriaceae RepID=C7N909_LEPBD Length = 106 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 54/103 (52%), Gaps = 5/103 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATIN 55 M + I+ KQ++IT AI+ + ++++++ K+ + ++L+ E AD + Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 + +++D+Y AI++L ++LERQ+ K + + + Sbjct: 61 ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDHNKK 103 >UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes RepID=D2BPB3_LACLK Length = 185 Score = 96.3 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 3/113 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTH--LINPHIILSKEP-QGFVADATINTPN 58 NI + +E+T AIR +V D++ KL+K+ + ++ L + + T+ N Sbjct: 3 KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKN 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 L A +DMY++I+ + KLERQ+ K + + + F +E Sbjct: 63 VTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDEFA 115 >UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF930 Length = 129 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 55/94 (58%), Positives = 71/94 (75%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M++NI+SKQM+ITPAIR H+ +RLAKLEK+ T LINPH +L K+P F +ATI TP G Sbjct: 36 MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEA 94 LVA +HED+YTAI ++ KLE +L KL+ K E Sbjct: 96 LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEKNEH 129 >UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2 Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV Length = 96 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNG 59 M NIT + ++I+PA+R+H+ L +LE+ ++ + + L +A+ T++ + Sbjct: 1 MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + A G+HEDMY AI+ L KLE+QL + + K E R Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96 >UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae RepID=B0U6N0_XYLFM Length = 105 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 49/99 (49%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +Q+E+TPA+R++V +L +L++ +H LS ATIN P Sbjct: 1 MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 L A+ MY AI+ + +KL+R + K + K A Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDHHAKE 99 >UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18 Tax=Corynebacterineae RepID=A1T5Y3_MYCVP Length = 250 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATIN 55 + +T + +E+ R +VA++L++LE++ L + L E + T Sbjct: 48 EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQHVEITAK 107 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 V+ + Y A+ ++KLE +L K + + + + + E Sbjct: 108 GRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIHYGDKTPRSLREACSPE 163 >UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium RepID=C3WBJ3_FUSMR Length = 183 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS----KEPQGFVADATINT 56 M M I KQ+ IT AI+ + +L ++EK+ +I I LS K A+ Sbjct: 1 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + AS D+Y AI+ + + LE QL K + K + + E Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIRTAVQSREPMIRKVKYDPE 115 >UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT Length = 178 Score = 94.7 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEPQGFVADATINTPN 58 M NI +K + +T +++H+ +LAK+ + H + + + KE + + T + P Sbjct: 1 MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 V+ + +D Y + + N LER++ + + + R A++ + + EV +E Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMRHRASAKEILEAIPEVPDE 115 >UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5 Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5 Length = 196 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 2/114 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 MT+ ++ K + + A+R V +R + L K+ + HI LSK+ GF D ++ Sbjct: 1 MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 L A D Y + ++ + ++E++L + + K + R A S + V + Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDRSARKSHALSEAVAALAA 114 >UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVF2_9PROT Length = 107 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 53/101 (52%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + +EIT A+ + ++ K+ + ++ + IL E +A+ ++ + Sbjct: 1 MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + + DMY I++LI+K++RQ+ K++ K + + V Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDHHQSEGV 101 >UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4 Tax=Actinomycetaceae RepID=C2BSF1_9ACTO Length = 219 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + + ++ EI P R+++ +++AK+E+ + L+ E + T+ Sbjct: 13 MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 V+ A D Y A++ KL +L + + + + R D ++ E Sbjct: 73 LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELDVQIPE 130 >UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XRD3_9CAUL Length = 237 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTHLIN-PHIILSKEPQGFVADATINTP- 57 M + ++ K +++ A+ ++ L + K+ +++SK+ GF D + Sbjct: 19 MQVQVSGKHVDVGEALGSRISQELQEGVGKYFERGGENAEVVVSKDGYGFKVDCWVRLAS 78 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 LV +G D + A + + KLE+++ + + + + E+ E Sbjct: 79 GQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDHHIGPKGLSPEKTEDAARE 134 >UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Verrucomicrobia RepID=B4D5R5_9BACT Length = 191 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV-L 61 + +T + + +T I+ + R+ L +I H+IL E A+ ++ N + + Sbjct: 10 VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHITI 69 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 AS + +DMY +I+ + K+ +Q+ K + K + E+V Sbjct: 70 EASHETDDMYASIDGVAAKIAQQMRKYKTKILRNHRPRQQSIRHLEEQV 118 >UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae RepID=A9WMP6_RENSM Length = 267 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M I+ + + ++ R++ ++++KLE + +SK+P + T+ Sbjct: 26 MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 V+ A D + A + NKL +L + + K + + K Sbjct: 86 QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLHHGRHTPK 133 >UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=Rhizobiales RepID=RP5M_RHIME Length = 190 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 50/114 (43%), Gaps = 2/114 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M++ ++ K MEI + R + +++ + + K+ + + + K F AD ++ Sbjct: 1 MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 VL A+G+ + +A + ++E++L + + K + V + Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDHHNGNGQNSTEVAYRVMD 114 >UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia RepID=C4K0H4_RICPU Length = 192 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINT--- 56 M ++++ + + I ++++ +R ++ +K+ T +IN I SKE F D + Sbjct: 1 MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + ++ ++ D+Y A ++ ++KLE+QL K + K + A Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNHHAGKVK 105 >UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MPR7_9FIRM Length = 211 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 MT+NIT+K++++T A + ++ KL+++ + + + LS++ + T+ T Sbjct: 38 MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + + K D A + I+++ RQ+ K + + E + ++ + V E + + Sbjct: 98 IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEKQLHSSFKGSFDDVVEEQAD 151 >UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD Length = 189 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 15/128 (11%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTH---LINPHIILSKEPQGFVA-----DA 52 M + + + + +T ++ ++ +++ ++ K+ + + L E +A + Sbjct: 1 MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60 Query: 53 TINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-------RAATSVKDAN 105 T+ VL A EDMY +I+ + +KLERQ+ + + + R + Sbjct: 61 TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDRWHGRLKNHEGARAEPQP 120 Query: 106 FVEEVEEE 113 FV E EE+ Sbjct: 121 FVAEEEED 128 >UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP Length = 178 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-GFVADATINT-PN 58 M + IT+K +++TPAI+ RL K+EK+ ++ I LS + + A ++ Sbjct: 1 MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + A+ D+Y AI+ K E QL K++ K ++RR+ + NF++ V Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSRRSKK-EEIVNFIDPVM 112 >UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A8RDK2_9FIRM Length = 177 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M +NI K + +TPA+ + + +L LEK+ + ++++ P + TI T Sbjct: 1 MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS----VKDANFVEEVEE 112 VL H+D+Y AI+ I+KLE Q+ + + + + +++ +F + E+ Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTRKNKEKLAYAFIEEMDFEDSYED 118 >UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium RepID=A5TX76_FUSNP Length = 181 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 8/121 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS----KEPQGFVADATINT 56 M ++I +++ +T AIR++ ++++K+EK+ +I L+ K V + Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA----NFVEEVEE 112 L A+ D+Y +I++ ++ +E L K + K + + +++ E EE Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSRAKVQDDTRKKSYSFDYIVEPEE 120 Query: 113 E 113 + Sbjct: 121 K 121 >UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes RepID=Y1964_STAS1 Length = 190 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSK---EPQGFVADATINTPN 58 I + + IT AIR ++ +++ KLE++ + N + + + TI Sbjct: 3 RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLKK 62 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 L A +++D+Y I+ + NKLERQ+ K + + R ++A E+E Sbjct: 63 VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEEKE 117 >UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VDW4_9CLOT Length = 170 Score = 92.0 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 44/86 (51%) Query: 10 MEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHED 69 +++T ++ V D+L+KLEK+ + S E + TI ++ A +D Sbjct: 5 IDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVSDD 64 Query: 70 MYTAINELINKLERQLNKLQHKGEAR 95 MY +I+ ++ +ERQ+N+ + K + Sbjct: 65 MYVSIDLVLEVIERQVNRHKKKLIDK 90 >UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT Length = 110 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 66/103 (64%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ITSK +++TP+IR++V + KLE+ Q +I+PH+ + KE + +V +A I P G Sbjct: 1 MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKD 103 L A +HED++ AIN L KLERQ+ + H+ +ARR + Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRHIHRPDARRHRDVQRQ 103 >UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO Length = 284 Score = 91.3 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEPQG---------FVA 50 + + + +EIT +IR++ +++ K + + S Sbjct: 81 KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKT 140 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 + T+ T NG++ + + +D+Y +I+ + +KLER+L K++ K ++R + + Sbjct: 141 EVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEKKISKRPKHNKNAPKAQTDA 200 >UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QBC3_CATAD Length = 237 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + S+ E+T R+HV ++LAK+E+ I+ ++L +E + T+ Sbjct: 1 MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60 Query: 55 NTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + P + V+ A D Y+A++ KL+ QL +++ + + R ++ D+ + Sbjct: 61 DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIHRNRKAIADSIKHLPPMAD 120 >UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33 Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN Length = 122 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI+ +++T +I++H+ ++ AK+ LI+ II+SKE F + + N Sbjct: 1 MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT---SVKDANFVEEVEEE 113 + A G MY AI KLE L + + +A + + ++ + E+E Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLKADLHEKPDLTEPETDYETDEEKE 116 >UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEK7_9RHIZ Length = 198 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 54/114 (47%), Gaps = 2/114 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINT-PN 58 MT+ IT K ++ A + + +D++ L K+ + + H+ L +E F ++ Sbjct: 1 MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 +L A G+ +D YT+++ ++LE ++ + + + + + + E + Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNHSSPEAAARRKIDMEARD 114 >UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IJQ7_AZOC5 Length = 198 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 50/101 (49%), Gaps = 2/101 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M + ++ K M++ A+RQ +DR++++ K+ + H + +E G+ ++ ++ Sbjct: 1 MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 L A G ++ + + K+E++L + + + + R Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKGRHPQP 101 >UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2 Tax=Alteromonadales RepID=Q21ND3_SACD2 Length = 118 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N++ +E+T AIR ++ K+ HL + + L+ E +AT Sbjct: 1 MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 L D+Y AI + + KLE L+ + +A + Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRKGITKANLHEKPI 101 >UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=bacterium Ellin514 RepID=B9XGM0_9BACT Length = 117 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATIN 55 M + +T+ + +T AI H+ R+ KLE + IN + L + + F + Sbjct: 1 MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 P L A DMY AI+ + K+E+Q+ K Q K +AR+ + + +E E Sbjct: 61 VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKARKHTVASRTKRSRQEAE 116 >UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group RepID=Q9ZD30_RICPR Length = 143 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 4/105 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINT--- 56 M ++++ + + I ++++ +++ + ++K+ T +IN I SKE F D + Sbjct: 1 MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + ++ ++ D+Y A ++ ++KLE+QL K + K + + Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNHHSGKVK 105 >UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales RepID=RP5M_BRAJA Length = 203 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 2/101 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 MT+ I+ K + + A+R V+DR + L K+ + HI LSK+ GF D ++ Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 L A D Y + ++ + +E++L + + + + R A Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDRSARK 101 >UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L9_ACIC5 Length = 225 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 48/109 (44%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + T + + + A R + L ++ K +++ H++LS E +A+ TI Sbjct: 1 MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 LV++ + M TA+ + K E Q + + K ++ + + E Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKMVTKKRLPNEEKVIVEPE 109 >UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21 Tax=Shewanella RepID=A3QBU6_SHELP Length = 124 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLV 62 + ITSK E+T IR+ + RL KL + LINPH+I+ +E QGF +A++ P+ L Sbjct: 2 IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61 Query: 63 ASGKHEDMYTAINELINKLERQLNKLQHKGEA-RRAATSVKDANFVEEVEEE 113 A K +D+Y AIN + KLE+QLN+L HK E R A + E+++E Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHKPEGARYTAPATSPTPESAELDDE 113 >UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Gammaproteobacteria RepID=A6W0C2_MARMS Length = 105 Score = 89.7 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Query: 4 NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVA 63 I+ +++TPAI+ H+ ++L+K+ K + + ++ L K+ + A+A ++ P + A Sbjct: 5 KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFA 64 Query: 64 SGKHED-MYTAINELINKLERQLNKLQHKGEARRAAT 99 S ED ++ AI+++++KL +Q++K + K T Sbjct: 65 SASSEDRLFHAIDDMVDKLAKQIDKHKTKQSCTNHKT 101 >UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii RepID=A9KDT2_COXBN Length = 96 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 52/96 (54%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T + ++I+PA+R+ +L +++ + + N HII + DA + P Sbjct: 1 MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 + A + +DMY ++ L++KLE QL+K + K R Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDHR 96 >UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ2_ACHLI Length = 185 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 1 MTMNITSKQ-MEITPAIRQHVADRLAKLEKWQTH--LINPHIILSKEPQGFVADATINTP 57 M I K T AI+ +V +L K+ + ++L + + TI P Sbjct: 1 MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR--RAATSVKDANFVEEVEEE 113 +L + + DMY AI++ ++KL Q+ + + K + V F E ++ Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHHFEKRGQEVFSTEFSLEAMDK 118 >UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4 Tax=Acidithiobacillus RepID=RP5M_THIFE Length = 78 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS---KEPQGFVADATINTP 57 M + IT + +++T +I+ + +++ +L ++ H+ N ++L E V D T+N P Sbjct: 1 MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60 Query: 58 NGVLVASGKHEDMYTAIN 75 V A DMYT I+ Sbjct: 61 GHVFHAEVHDADMYTGID 78 >UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna RepID=B0S0M8_FINM2 Length = 179 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNG 59 M +N +K +++T ++Q +L KL+K+ ++ KE + T+ Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 VL A +ED+ TAI+++ + L RQ+ K + K + R ++ VEE Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKRFTESNSIRFEAVEE 110 >UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15 Tax=Desulfovibrionales RepID=Q310S7_DESDG Length = 190 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHL--INPHIILSKEPQGFVADATINTPN 58 M + T K E + ++++ R KL ++ + ++LS + A+ Sbjct: 11 MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGE 93 L A + EDMY I+ +++KLE Q+ K K + Sbjct: 71 LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105 >UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT Length = 200 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 10 MEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG-VLVASGKHE 68 ME + A+R + DRLAK++++ + + + S E +A + NG L +S K E Sbjct: 1 MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLRNGLQLHSSEKTE 60 Query: 69 DMYTAINELINKLERQLNKLQHKGEARRAATSV 101 MY++I+ + K+ERQ+ + + + + Sbjct: 61 SMYSSIDMALAKMERQVRRYKDRITNHKPHKGK 93 >UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LMC5_PICSI Length = 321 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 2 TMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGF-------VADAT 53 + I K ++T A++ ++ +++ ++K + + LS + T Sbjct: 89 RLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVGKGPKIRRCEVT 148 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 + T +GV+ A + E +Y +I+ + + + R+L K++ K + ++ + E Sbjct: 149 LFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKDGGHGRPSKMRKQPKLGE 205 >UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Actinomycetales RepID=D1BCP0_SANKS Length = 220 Score = 88.6 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ------GFVADATI 54 M + + + E+ R+H D+LAK+E+ + ++ E + T+ Sbjct: 1 MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRQSGIRERVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 V+ A +D + A++ +NKL +L + + + R + D V Sbjct: 61 RDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKNRFRHPAPMDTADVRP 115 >UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Nautiliaceae RepID=B9L9D3_NAUPA Length = 166 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-VADATINTP-N 58 M + I + +E+T A++ H++ ++++EK+ +++ + + K+ + F + +N P Sbjct: 1 MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 G V K +DMY A+++ +KLE+ L + K R +++ EE +E Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDYRKKDRIEELIVEEEQDE 114 >UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TA00_PHYPA Length = 297 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQG-------FVADAT 53 + I K +E+T AI+Q+V +++ + + + +S + T Sbjct: 89 RLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGRGERLQRCEVT 148 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + T +GV+ A + E MY +I+ + + + R+L K++ K Sbjct: 149 LFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGH 191 >UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPI1_PARL1 Length = 193 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINT-PN 58 M + ++ +++ A+R H +RL + K+ ++ + L+K+ F AD + + Sbjct: 1 MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60 Query: 59 GVLVASGKHEDMYTAINELINKLE 82 + A G ++Y + + +LE Sbjct: 61 LRVNAQGTANEVYASFEAALERLE 84 >UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LB60_RHOVA Length = 199 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINT-PN 58 MT+ +T K +++ ++R++ +R+ L+K+ ++ I + K GF + I+ Sbjct: 1 MTIKVTGKNIDLGESLREYALNRVESALDKYSGRSVSGQISVEKNTDGFFSHCAIHLESG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 L ++G D Y +++ + +LE++L + + + + + Sbjct: 61 LDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDHGQGDAA 103 >UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPK4_BDEBA Length = 116 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 48/105 (45%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N T K ++ + ++ + +R+A++ ++ ++ SK F + ++NT Sbjct: 1 MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKY 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 A+ D+Y A++ K+E+Q K + + + K A Sbjct: 61 FKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDHKKPELTKGAR 105 >UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3T1_SPHTD Length = 194 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG-----FVADATIN 55 M + I ++ + +T A+++++ RL +L+K + + + E VA TI Sbjct: 1 MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTGGEQMVAQFTIA 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 T + +L K+ D++ AI+ I ++ERQ+ + + K R A E + Sbjct: 61 TKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKRVFYRRRQRQMAAEAGEPLP 116 >UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation protein n=4 Tax=Actinomycetales RepID=Q2JEZ4_FRASC Length = 267 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + + + + R HV +LAKLE+ +++I + LSKE + T+ Sbjct: 1 MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRLSDVCDRVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + V+ A D Y A++ KL +L + + A + + V Sbjct: 61 YSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRHHANHAGAKPTGITSVP 117 >UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ Length = 207 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT---- 56 M + +T + E+T R HV ++L KLEK +I ++ + E AD + Sbjct: 1 MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60 Query: 57 --PNGVLVASGKHEDMYTAINELINKLERQLNKLQH 90 V+ A D A++ ++K+ Q+ + Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRRASD 96 >UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli RepID=A8PQ11_9COXI Length = 111 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 61/102 (59%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT +++T A++Q++ D+ +LE+ HI LS E VA A ++T Sbjct: 1 MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 A K+E++YTAI+ELI+K+E+Q+NK + K + +R S K Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKEKRHDRSEK 102 >UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQU2_AKKM8 Length = 197 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNGVL 61 + IT + +E+T AIR+ V ++ + ++ ++L + ++ + + + Sbjct: 10 ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHITI 69 Query: 62 VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 AS + DMY I+E I K+ R++ K + + + ++E Sbjct: 70 DASTEGTDMYACIDETITKIMRRMRKHKTRLMKNFRPHHQETIRKLDE 117 >UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae RepID=C9M512_9BACT Length = 197 Score = 87.0 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-ADATINTPNG 59 M + T+ +I +++++ +L ++EK+ + +++ + + + + FV + T + Sbjct: 16 MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQH------KGEARRAATSVKDANFVEEVE 111 VL + D+ A + + LER++ + + + +A + +D E E Sbjct: 76 VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYLIDRAQLKAHDVSFGYEDTAAQAEPE 133 >UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Synergistaceae RepID=D1B9M7_THEAS Length = 180 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ++ +E+ +++ + +L KLE++ +++ + + + +V + T N V Sbjct: 1 MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + D+ A + + +ERQ+ + + R + KD +F E E Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDMLVDRLQLKT-KDISFELETE 110 >UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus RepID=C7HV18_9FIRM Length = 177 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 1/113 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI K + + ++++ ++ +L+K+ + S E ++TI G Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60 Query: 61 L-VASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 + A +++ T I+++I+ L RQ+ K + K + R + +EE Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQRNRRNGESIKFESFDNIEE 113 >UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N462_9BACT Length = 114 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M +++T +Q EITP+IR++V R+ L E + +++ + F +N Sbjct: 1 MKISVTGRQFEITPSIREYVESRIQALVEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYH 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 V+ A + D+Y + + + K++ QL ++ K + +A Sbjct: 61 VVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSHQAPP 100 >UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=C6YXL0_ORYSJ Length = 321 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQG-------FVADAT 53 + + + +++ +++H+ ++ + + K + + LS + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 + T +GV+ A E Y +I+ + ++R+L K++ K R K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKPP 193 >UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQP5_9BACE Length = 181 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 7/120 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M T K++ + + + ++ KL+++ I+ S E + TI + + Sbjct: 1 MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-------RAATSVKDANFVEEVEEE 113 + + DM+ I+ + +ERQL K + + E R R+ + ++FV + EEE Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKRLRQDAFVRSVDEEEISSFVPDTEEE 120 >UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29 Tax=Actinomycetales RepID=C7MXY7_SACVD Length = 226 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + I + +E+ R HVA ++A+LE++ +I+ + L EP + T Sbjct: 1 MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLE 82 V+ A + D YTA++ I KLE Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88 >UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class) RepID=Q6AGI3_LEIXX Length = 232 Score = 85.9 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 7/114 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSK-------EPQGFVADAT 53 M +NI + + IT R++ A++ K+ I+ I +S+ + + T Sbjct: 1 MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60 Query: 54 INTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 + P + + D Y A + + KL ++ + + + + R Sbjct: 61 LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVHRGQHRPTSLREA 114 >UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04A0 Length = 177 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M ++ ++ E+T + + + +++LEK+ + ++ E Q + IN V Sbjct: 1 MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA--TSVKDANFVEEV 110 L A + E+MY +++++ LERQ+ + ++K + + F++EV Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLRTKHRQAEQHIFTPAFMDEV 112 >UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons RepID=RR30_SPIOL Length = 302 Score = 85.5 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 10/120 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILS-------KEPQGFVADAT 53 + + + +E++ +R HV D++ K + K + + LS K P+ + T Sbjct: 76 KLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVT 135 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-RAATSVKDANFVEEVE 111 + T +GV+ A E +Y++I+ + + ++R+L K++ K R + + Sbjct: 136 LFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEP 195 >UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM Length = 112 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 56/112 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + IT + ++ + +I++ V L ++ + + H+IL K + +A+AT++ Sbjct: 1 MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 + A +++Y A++ L +K++RQL+K+ K ++ +E Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQKNVNKKGVQRPATEAEIEAEPA 112 >UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK5_FIBSS Length = 105 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-PQGFVADATINTPNG 59 M + +++ + ++ + + + KL K+ ++ + +IL E + ++N Sbjct: 1 MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEVEHQRHCEISVNITGS 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 V+VAS E+M A++ + +++ QL K K R+ + Sbjct: 61 VIVASADEENMGKAVDVTLERIKVQLKKANDKQNDHRSQPVSE 103 >UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN Length = 195 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 6/116 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQ-----GFVADATIN 55 + I+ +++ ++ A+R HV +++ K + ++L + + T+ Sbjct: 3 DIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTVF 62 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 N V+ +DMY AI+E K+ RQL K + + + + + E Sbjct: 63 VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRGRALSQEE 118 >UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXY8_9BACT Length = 119 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 2/114 (1%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-GFVADATINT-PNG 59 + I ++ ++IT AIR + + K++K+ +++ + L + + +N Sbjct: 3 NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGP 62 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 +VA + DMY +I+ +++K+ QL K + K E++ V E E + Sbjct: 63 TIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIESKIVRQKKHSIGEVAESEGK 116 >UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT Length = 119 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 48/111 (43%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + ++ K +++T A++ V L+ + L ++LS F + ++ Sbjct: 1 MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 L A + +DMY +I + +++L+RQL K + + E E Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEKKLETFHHNHKGEHLGNIERRHEEE 111 >UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0Q0_9FIRM Length = 176 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 54/112 (48%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI++K + +++ + + +KL+K+ I++ K G+ +A + + Sbjct: 1 MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 + ED Y A++ + KL RQ++K + K +A+ + + ++ E Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLKAKFKPHKDMRFDILPDIAE 112 >UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM Length = 128 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG-FVADATINTPNG 59 MT ITSK++++T + + +A + AKLE++ +INPH+ +SK+ +A+I+ P G Sbjct: 1 MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV--KDANFVEEVEEE 113 L+A + ED+Y AI L KLERQLNK K A ++ EE+ E Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAHKSGKEQCRAGVISGEELPAE 116 >UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter RepID=RP5M_ACIGB Length = 113 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ----------GFVA 50 M + I + ITPAI +++ DR ++ K + + + LSK+ Q +A Sbjct: 1 MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60 Query: 51 DATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 +A + P L A +DMY AI +L +KL+RQL+K + Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99 >UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Alphaproteobacteria RepID=B0T677_CAUSK Length = 210 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINPHIILSKEPQGFVADATINTP-N 58 M + I+ K +++ A+R V+D + + K+ + +++SKE F D ++ Sbjct: 1 MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 L++ G D + A + + K+E ++ + + + ++ A + K A Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSHSIAATAKQAE 107 >UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia RepID=C6V4K5_NEORI Length = 186 Score = 84.7 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADR-LAKLEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + ++ ++ ++ +++ DR L ++K T + LSKE + F D +N+P Sbjct: 1 MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 ++ ASG+ D Y A + +K+ +L + + + + ++ Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEHKSEA 100 >UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Sulfurihydrogenibium RepID=B2V794_SULSY Length = 187 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ------THLINPHIILSKEPQGFV--ADA 52 M + K +EIT I+ + +L +L+ + + ++ E D Sbjct: 1 MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60 Query: 53 TINTP---NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 + GV+ A + D+Y+AI+ +I+++ERQL +L+ + S + Sbjct: 61 DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRRIEASRRESRLEKMKEHT 120 Query: 110 VEE 112 V+E Sbjct: 121 VQE 123 >UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH Length = 111 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 56/111 (50%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T K +E + ++Q V+++L K ++ ++LS E +A+ + Sbjct: 1 MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 ++ + EDMY AI+ +++K+E+Q+ K + K + R AT ++ Sbjct: 61 IIGKEETEDMYAAIDLVMDKIEKQIKKNKQKIKQHRPATRKAAKREDTDLP 111 >UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO Length = 199 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK----LEKWQTHLINPHIILSKEPQGFVADATINT 56 M + +K++E+T A+ ++ R++K L+K + + ++KE + + T + Sbjct: 1 MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60 Query: 57 P--NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 + ++ + D+Y AI+E+ + LER++ KL+++ + + + ++ Sbjct: 61 NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQEQSRTDKKARMEIEQNLQN 118 >UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT Length = 177 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ--THLINPHIILSKEPQGFVADATINTPN 58 M ++K + +PAI +++ R K+++ +++ I K+ +V A IN Sbjct: 1 MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 ++V K D+YTAI+ L + LE+++ K++ R K + + E E Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVRERHRMPVEKIPSISDTYEFE 115 >UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PW5_SOLUE Length = 181 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 3/115 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT---HLINPHIILSKEPQGFVADATINTP 57 M + T +Q+E+ PA + + R AK+ + H+ILS E A+ATIN Sbjct: 1 MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 N LV G D++ AI+ KLE+Q K + K + E Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFRDSKRTPHKAAPEVETETAA 115 >UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD Length = 196 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILSKEPQ-----GFVADATIN 55 + I+ +++ I+ A+R HV ++ K ++ ++L + + T+ Sbjct: 3 DIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTVF 62 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK-GEARRAATSVKDANFVEE 109 N V+ + +DMY AI+E +K+ RQL K + K E R S + +E Sbjct: 63 VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVERRHHMKSERGIALTQE 117 >UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS Length = 198 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 6/98 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHII-----LSKEPQGFVADATIN 55 M + + S+ +++ RQH+ +L++L+++ + + E T+ Sbjct: 6 MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65 Query: 56 TPNGVL-VASGKHEDMYTAINELINKLERQLNKLQHKG 92 +GVL A + ++Y AI+E+ + L+RQ+ + + K Sbjct: 66 GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH 103 >UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8 Length = 99 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I + + T + + +++KLE++ +I + L + A ++ Sbjct: 1 MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 NG A ++ AI++ + LE+QL K + K A+ Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIRAK 99 >UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR Length = 256 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 52/112 (46%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M NI K + IT +R+H+A+++ ++ +I+ +II + TI V Sbjct: 1 MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEE 112 K +D+Y AI+ + K+ER++ K + + + V + +E + Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKERNIDKSQRAVVDKSMQNDEEDN 112 >UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYI7_METI4 Length = 115 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 7/112 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-------PQGFVADAT 53 M + I+S +++T A+ H+ + KL + +++ + + E Q F A Sbjct: 1 MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60 Query: 54 INTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN 105 + P +VA + D+Y A++ ++++L RQL K + + TS + Sbjct: 61 LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTDKSRDTSREFKE 112 >UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales RepID=A8J8B2_CHLRE Length = 286 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILS--------KEPQGFVADA 52 + I +++ +T AI+ +V +++AK + + L + LS + + Sbjct: 71 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 130 Query: 53 TI-NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 TI NGV+ ++Y AI+ + +K+ +L K++ K +R A + E Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 190 Query: 112 E 112 + Sbjct: 191 D 191 >UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF Length = 234 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVAD------ATIN 55 ++IT + +E+ + V +LAK+E+ L H+ L EP AD T Sbjct: 25 QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 + A K + Y A+ + K+ER L K++ + R+ Sbjct: 85 GKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRSISRSGHRA 130 >UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=2 Tax=Planctomyces RepID=C1Z9P6_PLALI Length = 114 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 52/114 (45%), Gaps = 1/114 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNG 59 M + ITS+ I+P ++ + ++ KL + + + ++ +S E + ++ Sbjct: 1 MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHKH 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 VA+ +++ ++K+E+Q++K + K + + + D + E+ Sbjct: 61 DFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDHKGGPTAADVATLPAEGEK 114 >UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12 Tax=Flavobacteria RepID=A0M3Z9_GRAFK Length = 100 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M MN+ S + +L KL+ + +I+ + + + + + ++ Sbjct: 1 MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P G ++ ++E ++ L+RQL K + K A Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99 >UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Actinobacteridae RepID=A6WEN5_KINRD Length = 256 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 6/107 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + +T + ++ R+HV D+L K+ ++ + LS E + T+ Sbjct: 1 MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRQASSSERVEITV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 V+ A +D Y A++ KL +L + + + + Sbjct: 61 RDKGPVVRAEACADDPYAALDLATTKLYERLRRSRDRRKVHHGRHRP 107 >UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFI2_KYTSD Length = 245 Score = 82.8 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + +T ++ ++T R+HV ++L +L + ++ + EP + T Sbjct: 1 MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRRSEDAERIEITC 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 + V+ A E Y A++ ++ K+ ++ +L + + + Sbjct: 61 HDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVHKGRPKGSSVAAA 113 >UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP Length = 127 Score = 82.4 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 5/113 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATINT 56 + + +T A+++ + ++ + L + +++ ++ + ++ + A A I Sbjct: 12 KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEI 71 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 LVAS + +D Y I+ L+ KL+RQL Q + + +R + + Sbjct: 72 GGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKDKRNHPESPEIDAALP 124 >UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Betaproteobacteria RepID=Q3SIX5_THIDA Length = 189 Score = 82.4 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 10/115 (8%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS------KEPQGFVADATINT 56 + IT + +E + A+ H+ ++ KLE + +++ ++L + + F I Sbjct: 5 LQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRIDIGV 64 Query: 57 PNGVLVAS-GKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 P +V + HED+Y A+ + + RQL+ + R T D F+ EV Sbjct: 65 PGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRRL---RRETKTHDREFIGEV 116 >UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ2_9BACT Length = 114 Score = 82.0 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S Q +T ++ + + AK+ K+ ++ +IL IN Sbjct: 1 MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 P + ++ + + RQL+K + K ++A K Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQRGKKADPIRK 106 >UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae RepID=A1ZNT3_9SPHI Length = 100 Score = 82.0 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-----ADATIN 55 M + S P + + + + KLE + +I+ + L E + +N Sbjct: 1 MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 P +L A ++ + L RQL K + K Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96 >UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorobiaceae RepID=Q3B2F4_PELLD Length = 130 Score = 82.0 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV----ADATINTP 57 T+ +T + AI ++ + L K ++ H+IL + F A+ T++ P Sbjct: 35 TIKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEKNKNAEITLHVP 94 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKG 92 +A I+ ++ L RQL K + K Sbjct: 95 QHDFIAKESGTAYELCIDACVDALGRQLQKYKEKM 129 >UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VXE1_9CLOT Length = 183 Score = 81.6 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATIN-TPNG 59 M + IT +++ + ++ V +L K + + + ++ E + + TI Sbjct: 1 MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 V + +M A++E++N L RQ+ K + K E + Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEKK 96 >UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PYC3_VIBCH Length = 78 Score = 81.6 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +NI +++T +++ +V + KLE++ H+ + +IL E +A+AT++ Sbjct: 1 MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60 Query: 61 LVASGKHEDM 70 + A E Sbjct: 61 IHAHADDETC 70 >UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides RepID=D2EW39_9BACE Length = 99 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S + + ++ V ++AKLEK+ + + L + A + Sbjct: 1 MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 PNG A+ + A++ + LE+QL K + K ++ Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRSK 99 >UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBI5_9PORP Length = 403 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINTP 57 ++I S Q + + A++ ++ +L ++ + I L + +G +A + P Sbjct: 309 NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKIAAIRLFVP 368 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQH 90 A AI+E I+ L+RQ+++ + Sbjct: 369 GHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE 401 >UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG17_9BACT Length = 123 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 6/114 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSK------EPQGFVADATIN 55 + IT M++T AI+Q V +++ +L + + +I + L F+A I Sbjct: 8 DLIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIE 67 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 + S D Y A++ L++KL+R L + +R T D Sbjct: 68 INGPTMNVSVSDPDCYKAVDLLVDKLDRMLRRRSRLQRVKRKDTHEVDIPASLP 121 >UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRA6_9PROT Length = 197 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQGFVADATINTPNG 59 M + IT + +++ A++ HV + L+ +EK+ + KE G + T++ +G Sbjct: 1 MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60 Query: 60 VLVA-SGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 V +A GK +D Y A + + KLE++L + + + + + Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLEKRLRRYKRRLKDHHTSNR 102 >UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA Length = 172 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 16/111 (14%) Query: 1 MT--MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-------AD 51 M + IT + ME + A+ +H+ D KLE++ ++ H+++ EP Sbjct: 62 MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVE-EPHRHKQHGRHFHVR 120 Query: 52 ATINTPNGVLVASGK------HEDMYTAINELINKLERQLNKLQHKGEARR 96 ++ P +VAS HED Y A+ E + RQL Sbjct: 121 VDVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTHH 171 >UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD Length = 179 Score = 81.2 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINT-PNG 59 M +N+ +K +T IR + +L+K+ + +KE FV + T Sbjct: 1 MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKG-EARRAATSVK 102 +L + E TAI+ I+ L RQ+ K + K R+ S+K Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKLMRGRQKGESIK 104 >UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR Length = 209 Score = 80.5 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 8/96 (8%) Query: 3 MNITSKQMEITPAIRQHVADRLA-KLEKWQTH--LINPHIILSKEPQ-----GFVADATI 54 + I + +E+TPA+ +HV R+ ++ K ++ + +ILS G + Sbjct: 13 VIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSVSKNPKVKNGHRVEVVT 72 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQH 90 N ++ + DMY +I+ + L R+L K + Sbjct: 73 NLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108 >UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales RepID=D0LFC2_GORB4 Length = 270 Score = 80.5 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATIN 55 T+ + + +EI R +V D+LA+LE++ + + L+ E + T Sbjct: 62 TVVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITAT 121 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 ++ A E+ Y A+ ++KLE +L +++ + E+ Sbjct: 122 GKGPIVRAQACGENFYAALEGSLDKLESRLRRVKDRRRVHHGNRRPISVAEATEI 176 >UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium RepID=A9W5P1_METEP Length = 202 Score = 80.5 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Query: 3 MNITSKQMEITPAIRQHVADRLA-KLEKWQTHLINP----HIILSKEPQGFVADATINT- 56 + +T +++ A+R V DR+A L K+ ++ H+ L ++ + D ++ Sbjct: 4 LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L ASG D++ + + +KLE++L + +HK + AA+ Sbjct: 64 TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDHGAASH 107 >UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum bicolor RepID=C5WRX8_SORBI Length = 310 Score = 80.5 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQG-------FVADAT 53 + + + ++++ +++H+ D++ + + K + + LS + T Sbjct: 73 RLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELGRGPKTSRCEIT 132 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 + + +GVL A E Y +I+ ++R+L K++ K Sbjct: 133 LFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK 171 >UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC Length = 180 Score = 80.5 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M ++IT KQ E+T +I+ +V L K+ +I+ ++S + +GF+ D IN Sbjct: 1 MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADERNGKKGFIVDFLINL 60 Query: 57 -PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 +V K +D+Y AI+ + N+ + L + K + K E Sbjct: 61 AKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTHKNKDDKKQNALDE 113 >UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Propionibacterium acnes RepID=D1YBK0_PROAC Length = 203 Score = 80.1 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + ++ + ++ +R V DRL+ +EK + + ++ + + + T+ Sbjct: 1 MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 V+ A G+ ED A + ++L QL K + +RR + + + E Sbjct: 61 RAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAADRRRSRRGLRVSQVLDILPEE 116 >UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9I9_9CLOT Length = 180 Score = 80.1 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLV 62 +NIT++ E+ + + L +++K + LSK G+ D T+ + Sbjct: 2 INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIR 61 Query: 63 ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 E + +I+ ++ L+R+L KL+ ++ + + D Sbjct: 62 GEAAAEKIEPSIDFAVDDLKRKLRKLKTSLVDKKRKSGIDDLAGA 106 >UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ Length = 309 Score = 79.7 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQG-------FVADAT 53 + + + +++ +++H+ ++ + + K + + LS + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 INTP-NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 + T +GV+ A E Y +I+ + ++R+L K++ K R K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKPP 193 >UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZQ7_9FLAO Length = 100 Score = 79.3 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATIN 55 M +N + + + + V +L KL+ ++ + E G + + ++ Sbjct: 1 MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMICEIKLS 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P L AS + AI I+ ++RQL K + K + Sbjct: 61 APGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100 >UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes RepID=C6Y270_PEDHD Length = 115 Score = 78.9 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 4/105 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + + S + + ++ KL+++ +I+ + L E +++ + Sbjct: 1 MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 P G + A + + A + I L +Q+ K + K + + V Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTRIKLSEHKV 105 >UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8 Tax=Chlorobiaceae RepID=B4S5H7_PROA2 Length = 110 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV----ADATINTP 57 + +T + I Q+ D + L+K + +IN H+IL + + A+ T++ P Sbjct: 12 NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVP 71 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 VLVA AI+ ++ + RQL K + K +A + Sbjct: 72 QQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAHK 110 >UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=3 Tax=Campylobacterales RepID=Q30TJ3_SULDN Length = 180 Score = 78.5 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M +++T + +E+T AI+ H+ + L K+ +I+ ++I S + V + IN Sbjct: 1 MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIASTQTKKGKDHSVVEFVINL 60 Query: 57 PNGV-LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 + +V +D+Y AI+ + ++ + ++ + Sbjct: 61 AHKNSIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGHHKD 103 >UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD Length = 125 Score = 78.5 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADATI 54 M + + + + P + + +L KL+ + + + + L + + Sbjct: 1 MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 P G + + A + I+ L+ Q+ K ++K RA + Sbjct: 61 YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNNARAPKVAE 108 >UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0T2_SALRD Length = 132 Score = 78.5 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP---QGFVADATINTPN 58 +T++ ++++ + ++ DR AKLE++ + H+IL K+ + A I+ Sbjct: 30 QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQ 89 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 L A AIN ++ L RQL K + K ++ Sbjct: 90 KRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRSKDKDAH 131 >UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales RepID=C6II14_9BACE Length = 123 Score = 78.5 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S + + ++ + +++KLEK+ + + L + A I Sbjct: 25 MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 PNG AS + A++ + LE+QL K + K ++ Sbjct: 85 PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRSK 123 >UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis group RepID=Q3YS76_EHRCJ Length = 197 Score = 78.2 bits (192), Expect = 9e-14, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQ--THLINPHIILSKEPQGFVADATIN-T 56 M + IT++ ++T I+ +V + + K+ ++ + LSK+ F + +I+ Sbjct: 1 MNIIITARGFDVTDNIKTYVERSVQDYITKFFADDSTVSVKVTLSKDANLFNSTISISDI 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQ-HKGEARRAATS 100 + + S + Y AI+ I+ L +L K + K R + Sbjct: 61 KSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKTEKINKYRHNKN 105 >UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Actinomycetales RepID=A0LVS3_ACIC1 Length = 322 Score = 77.8 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 5 ITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATINTPN 58 +TS+++E+ +R +V ++LAK+EK +I + +S+E + T + Sbjct: 1 MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRLADSCERVELTCISAG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 + A E M A + KLE +L K + R + V Sbjct: 61 PPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVHRGNRAPSLVAAANAVP 113 >UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacteraceae RepID=Q0BUA9_GRABC Length = 236 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 7/120 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQGFVADATINT-PN 58 M + ++ KQ++++ A+++ VA +L + K+ + + S+ F+ D ++ Sbjct: 35 MHITVSGKQIDLSDALQERVASQLDTISRKYFDQALEAQVTFSRLRSFFICDINLHAGRG 94 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR-----RAATSVKDANFVEEVEEE 113 +L G+ D A ++ + ++L + + + A ++ E+E Sbjct: 95 LILRGEGEAADANGAFDDAAEHIAKRLRRYRRRMNAHARDMTHRKKPELAREYILREEDE 154 >UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QU53_PERMH Length = 188 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 11/99 (11%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW------QTHLINPHIILSKEPQGFV--ADA 52 M + K +++T I+ + +L +L+ + + + + E D Sbjct: 1 MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60 Query: 53 TINTP---NGVLVASGKHEDMYTAINELINKLERQLNKL 88 I GV+ A + D+Y+AI+ +I+++ERQL +L Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRL 99 >UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTB3_BACTU Length = 181 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + +T K + +T ++ + +L L K+ + + E + ++ + Sbjct: 4 MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEKRL-TISVSVPFNGEL 62 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQ--HKGEARRAATSVKDANFVEEVEEE 113 + A K ED Y A++ +++K++RQ+ + K R + E +E Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKDIEKSMRRLHKKHILIPIANETEMKE 117 >UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS Length = 211 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 53/104 (50%), Gaps = 2/104 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFVADATINT-PN 58 M + + KQ+++ A+R HV D ++ L K+ + ++ +++S++ F AD ++ Sbjct: 1 MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 +L + G+ + Y A ++ K+ +++ + + + + + Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKVAKRMRRYKRRMRDHHGRAAEE 104 >UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria RepID=B8GU63_THISH Length = 192 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 12/121 (9%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS------KEPQGFVADATINT 56 + +T + M+ +PA+ V ++ KL ++ H++ +++ + + + Sbjct: 9 VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68 Query: 57 PNGVLVASGK------HEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEV 110 PNG LVAS + HED+Y A+ + + + RQL K R V E+ Sbjct: 69 PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGRVKHHETPPHGVVREI 128 Query: 111 E 111 Sbjct: 129 A 129 >UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2 Tax=Proteobacteria RepID=A4U0N1_9PROT Length = 120 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 13/105 (12%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHI----------ILSKEPQGFVADA 52 + IT ++ + A+ V +++AKLE++ + + + L + ++ Sbjct: 7 LQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESDHKNSSNLHHKGNSYLVRI 66 Query: 53 TINTPNGVLVAS---GKHEDMYTAINELINKLERQLNKLQHKGEA 94 +N P LV +HED+Y A+ +ERQL + + Sbjct: 67 DLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEYVARSRG 111 >UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB Length = 180 Score = 77.0 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 6/116 (5%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT-P 57 ++I K ++T I+ ++ D L K + + +S + +GF + I+ Sbjct: 4 LHIYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADERNGKKGFTFEFDIHVAK 63 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 G +V + K +D+Y AI+ + + ++ L + K + + S+++ +EEE Sbjct: 64 KGNVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNHKN-ISLEEIMAAPMIEEE 118 >UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR29_ACIBL Length = 198 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +Q ITPA+R+ V L KL K +ILS E +A+ TI Sbjct: 1 MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 LV G+ DM TAI E + +E+Q K RR A++ E E E Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQALKH---NNRRRNIKRKGKADWKETSEGE 110 >UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Campylobacterales RepID=D1B1B4_SULD5 Length = 171 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M +I KQ ++T I+ ++ + L K+ +I+ ++S + +GF + IN Sbjct: 1 MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADEKNGKKGFSVEFAINM 60 Query: 57 PNG-VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + +V K +D+Y A++ + + ++ L + K +++ + E ++ Sbjct: 61 AHKNTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNSQKKVEETLEVIENNEGSDD 118 >UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7IG48_THEAB Length = 176 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +++K ++T A++ ++ R K+++ ++ I L K+ F+ A I+ Sbjct: 1 MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDAN-FVEEVEEE 113 LV + +D+Y I+ L + E++L + + R + F +E+ EE Sbjct: 61 LVVTETSDDIYNLIDILSDAFEKKLKREREYVRTRNKSNLKGLGEVFKDEMPEE 114 >UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment) n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL Length = 192 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 6/112 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF------VADATI 54 M + + + E++P R H+ +LAK+E+ +++S EP + T+ Sbjct: 1 MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRQSGSSEKVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANF 106 V+ A +D Y A++ + +L +L + + + + R T + + Sbjct: 61 VDKGPVIRAEACADDAYAALDVALGRLLERLRRARDRRKDHRNHTPLTPVDV 112 >UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487B8_COLP3 Length = 111 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + I+ +EIT I+Q + ++ AK+ K ++ + ++ EP + T Sbjct: 1 MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 + + + +Y AI ++ KL+ L + A+ Sbjct: 61 VTVNASDKQLYVAIAKVAKKLQSALAHRKGVLSAK 95 >UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB Length = 190 Score = 76.6 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 14/115 (12%) Query: 1 MT--MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADA 52 M + +T + M+ A+R + R+ +L+ + + H+ L Sbjct: 1 MQTPLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRQGNLYEVTI 60 Query: 53 TINTPNGVLVASGKHEDMYT------AINELINKLERQLNKLQHKGEARRAATSV 101 + P LV D+ AI + +ERQL + + Sbjct: 61 ELRVPGTELVVHPTKGDVPAHEHPQVAIRDAFTAIERQLRAHKQRISGEVKQHEG 115 >UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6 Tax=Leptospira RepID=B0SB82_LEPBA Length = 95 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 41/95 (43%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M +N T K ++ + A + ++L ++ K+ +++ + A+ +N Sbjct: 1 MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 A + +D+Y I+ L +K+ Q +K K Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95 >UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4 Tax=Bacteroidetes RepID=A2U255_9FLAO Length = 100 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 MT+N +E + + + ++L KL ++ + E G + + ++ Sbjct: 1 MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTSSDNTGMICNIRLS 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGE 93 P L A H++ ++INE + L+ QL K + K Sbjct: 61 VPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMS 98 >UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174494B Length = 115 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIIL-----SKEPQGFVADATIN 55 M ++I+ + +++T AI Q+ A+R+ +E +I H++L +K + F A + Sbjct: 1 MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 + A D+Y A+++ + L RQL K + +R T+ K Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTALVDKRRQTTQKTKERA 111 >UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RH54_9RHOB Length = 192 Score = 75.9 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 11/103 (10%) Query: 4 NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-----ADATINTPN 58 +T K ++ + AI V +R+ KLE +I + + + D ++ P Sbjct: 6 EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKGTEYIIDISLQMPG 65 Query: 59 GVLVASGK------HEDMYTAINELINKLERQLNKLQHKGEAR 95 L H D+Y AI + N +ERQL + Q + + R Sbjct: 66 STLHIDRHPGDDHAHTDIYVAIRDAFNAMERQLRRWQDQHKGR 108 >UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00W70_OSTTA Length = 184 Score = 75.5 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEPQG-------FVADA 52 M + +EITPAI ++V ++ + + + S + Sbjct: 51 KMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTEV 110 Query: 53 TI-NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 T+ T L A G E++Y I++ + + R + K + K + A + DA+ E Sbjct: 111 TVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKHGGKGARHAAHDASPKE 167 >UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Marinomonas RepID=A6VX39_MARMS Length = 130 Score = 75.1 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF---VADATINTPN 58 T+NI+ ++ +++ V D++ L + + ++ L+ E G + +A+++ P Sbjct: 3 TLNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPG 62 Query: 59 GVLVASGKHE-DMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 L A + E + A++ L+ KLE+QL K + K R+ + KD E Sbjct: 63 HDLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAKHAGRQHHINAKDVESPVE 114 >UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Thermotogaceae RepID=A6LJQ7_THEM4 Length = 176 Score = 74.7 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 46/101 (45%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M I++K +E T A++ ++ RL K+++ + + L K+ +V ++ Sbjct: 1 MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKD 60 Query: 61 LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 LV S K D+Y I+ L + E+++ + + A Sbjct: 61 LVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVRPTHKANVK 101 >UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Aquificaceae RepID=B4U9J0_HYDS0 Length = 200 Score = 74.3 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 18/123 (14%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQ----THLINPHIILSKEPQGF-------- 48 M + K EIT +R V +L+K ++ + +S Sbjct: 1 MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60 Query: 49 ---VADATINTP---NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 D I G + A + +D+YTAI+++++++ERQL KL+ + R +S Sbjct: 61 SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKERRLNYRRKSSKT 120 Query: 103 DAN 105 Sbjct: 121 KEE 123 >UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSP2_9BACT Length = 98 Score = 74.3 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S + + + + V ++ KL+++ I +IL + VA ++ Sbjct: 1 MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEA 94 P LVA + + A++ I L+RQ++K + + E Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK 98 >UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria RepID=B6EGD2_ALISL Length = 120 Score = 73.9 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQG-FVADATINTPN 58 M + IT ++ITP IR+ + + KLE K +I H ++K G +A + Sbjct: 1 MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 G + AS + ED++ I E+ KLERQL+KLQHK EARRA + Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEARRATHAQ 103 >UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUF5_CHIPD Length = 99 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 5/96 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-----VADATIN 55 M + I + + + HV+ +L KL + +I+ + L + +A+ ++ Sbjct: 1 MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHQVKDKIAEIKVH 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 P L + + + + + + Q+ K + K Sbjct: 61 IPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK 96 >UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH Length = 122 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-PQGFVADATINTPNG 59 M++ IT++ E+ + Q + + K +K++ + + + E F+ + + G Sbjct: 1 MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANF 106 + + G+ ++ A NE ++L+RQL K + K A R+ K+ Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAHRSEKCEKEKER 107 >UniRef50_A2TTF7 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=4 Tax=Bacteroidetes RepID=A2TTF7_9FLAO Length = 103 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 4/93 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M + I +++ + A+ ++ D+L KL K LI ++I+ KE + + ++ Sbjct: 1 MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKETAQTHHNAICEIELSV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQ 89 P + A + ++ A+ E I+ L+ QL K + Sbjct: 61 PGPRIFAQSQEKNFEVAVKETISDLDVQLKKRK 93 >UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae RepID=C6X055_FLAB3 Length = 96 Score = 73.2 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M +++ S + + +H+ +L+KLE + ++ + L E + A+ + Sbjct: 1 MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVENKSDKENKTAEIILAV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQH 90 P +V ++++ +R L K + Sbjct: 61 PGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE 94 >UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Campylobacterales RepID=C3XP50_9HELI Length = 186 Score = 72.8 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 13/114 (11%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE------------PQGF 48 M ITS+ E+T A++ ++ LEK+Q +++ +I++ + + F Sbjct: 1 MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQEKKGSKKGEKKKKRTF 60 Query: 49 VADATINTPN-GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSV 101 D T++ + LV + +D Y A++ I ++ + L + K + A + Sbjct: 61 GIDITLSLAHSNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNKKFATPTQ 114 >UniRef50_A3U9H3 Site-specific recombinase, phage integrase family/ribosomal subunitinterface protein n=3 Tax=Flavobacteria RepID=A3U9H3_9FLAO Length = 100 Score = 72.4 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP-----QGFVADATIN 55 M +N + + + +++ KL ++ + KE G +A+ ++ Sbjct: 1 MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENTSEPDTGMIAEIRLS 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGE 93 P L A + + A+ E+ +L+ QL K + + Sbjct: 61 APGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRKASMK 98 >UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magnetospirillum RepID=Q2VZ29_MAGSA Length = 158 Score = 72.4 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 18/112 (16%) Query: 1 MTM--NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHII----------LSKEPQGF 48 M + IT ++ + A+ + +++AKLE + + ++ L + + F Sbjct: 39 MQIPLQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVIEQHHKNTSNLHHKGEPF 98 Query: 49 VADATINTPNGVLVASGK------HEDMYTAINELINKLERQLNKLQHKGEA 94 + P LV +ED+Y A+ E +ERQL + + Sbjct: 99 HIRLALTVPGDELVVKRDPKDSHVNEDIYVALREAFAGMERQLKEYVDRSRG 150 >UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=B5D3P6_9BACE Length = 113 Score = 72.4 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP----QGFVADATINT 56 M + I S + + + + + KLEK+ +++ + L A + Sbjct: 15 MEVRIQSIHFDASDKLEAFIQKKAEKLEKFCDNIMKVEVSLKVVKPETAMNKEAGVRVLA 74 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 N A + +I+ + L +QL K + K + + Sbjct: 75 LNSEFYAEKISDTFEESIDVCMEALSKQLLKAKEKLQGK 113 >UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associated protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M1S9_GRAFK Length = 99 Score = 72.0 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS----KEPQGFVADATINT 56 M ++ + + +L KLE ++ +I K+P G++ + ++ Sbjct: 1 METIFEFVNIDKSENLEAFTQKKLNKLETKYDWIVRANIFFKRDENKKPNGYITEVRLSA 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P + A +I E L+RQ K + K Sbjct: 61 PGPEIFAQSDENSFEASIAETTRDLDRQCEKRKAKMSTH 99 >UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT Length = 126 Score = 72.0 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE-----PQGFVADATINT 56 + + + +T A++ + + +L + + + I + + PQ F A I Sbjct: 12 KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRVHSGPQMFNAKGIIEL 71 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 ++AS ED Y +++ LI KL+R + K + RR A + + +E Sbjct: 72 RGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALKGRRHAD--EPLAVIAAAPDE 126 >UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SAX9_OSTLU Length = 132 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 5 ITSKQMEITPAIRQHVADRLAKLEKWQT--HLINPHIILSKEP-------QGFVADATI- 54 + +EITPAI ++ ++ K + + S + T+ Sbjct: 3 VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62 Query: 55 NTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDA 104 T L A G E++Y I+ + + R + K + K + + + +A Sbjct: 63 MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHSGKGSRHASHEA 112 >UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella burnetii RepID=A9KBC8_COXBN Length = 183 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 1 MTM--NITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADA 52 M + IT + ++ TPAI + + KL ++ +I+ HI++ + Sbjct: 6 MQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRI 65 Query: 53 TINTPNGVLVASGKH-EDMYTAINELINKLERQL 85 + P + ED+Y AI + + + R++ Sbjct: 66 NLTLPGKEFAVNRNEVEDLYVAIRDAFDDMARKV 99 >UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT Length = 155 Score = 71.2 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE------PQGFVADATIN 55 + ++ +E+TP+++ V ++ +L + + ++ I L + Q F+A + Sbjct: 38 ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 AS + + A+N L+ KL+R + + + +R TS E Sbjct: 98 INGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRFFKVQRHRTSALQLAEAALPE 153 >UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP Length = 126 Score = 71.2 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATINT 56 + ++ +E+TP+++ V ++ +L + + +I + L + + F A + Sbjct: 8 EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEI 67 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 L A + ++ + AI+ LI+KL+R L+K H + RR Sbjct: 68 HGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRHN 109 >UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms RepID=A1SY46_PSYIN Length = 189 Score = 71.2 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 16/116 (13%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS------KEPQGFVADATINT 56 + IT + M + A+ H+ +++AKL+++ H++ H+++ ++ + F + Sbjct: 5 LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64 Query: 57 PNGVLVA------SGKHEDMYTAINELINKLERQ----LNKLQHKGEARRAATSVK 102 P+G L+ HED Y AI + + RQ + K + K + K Sbjct: 65 PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTHETPDHGK 120 >UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Flavobacteriales RepID=A8UI75_9FLAO Length = 101 Score = 71.2 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 M +N S + + R+ KL+ + +I + L E + + +A ++ Sbjct: 1 MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVENTSDKENKIFEAKVSV 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P + + + + I LERQ+ K + K ++ Sbjct: 61 PGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLRSK 99 >UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Actinobacteridae RepID=D2RAS6_GARVA Length = 223 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + IT + +I R V ++ ++ I+L+ E + T+ Sbjct: 1 MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPRQADTAKRVEITV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELIN 79 + V+ A D ++A++ ++ Sbjct: 61 VAGSTVIRAEASSTDQFSALDMALD 85 >UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14ME0_SPICI Length = 125 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKW----QTHLINPHIILSKEPQGFV-ADATIN 55 M I SK + IT A+ QH+ D KL K+ + L++ I +KE + I Sbjct: 1 MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTAIDIR 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS--VKDANFVEEVEEE 113 N L A ++ D Y A+++ + K+E QL K++ K E R K + V + EEE Sbjct: 61 GRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDRHNKNQSLGKFYSEVNDAEEE 120 >UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLA7_9PLAN Length = 104 Score = 70.5 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 17 RQHVADRLAKLEKWQTHLINPHIILSKEPQGFV-ADATINT-PNGVLVASGKHEDMYTAI 74 ++ +++++ KL + + + + + E + + VA+ + A+ Sbjct: 6 QETISEKVQKLTRLFERITSVDVTVDLEHNDKPGVELRVTAERTDDFVAADSCSSLLGAL 65 Query: 75 NELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + I+K+E+QL K + + + R +KD V + E Sbjct: 66 DNSIHKMEQQLRKHKERLKDHR-GPGLKDQAAVNSPDSE 103 >UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AQL9_9FLAO Length = 99 Score = 70.5 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE----PQGFVADATINT 56 MT++I QM + A+ + ++ +L +L +I + +E +G + + ++ Sbjct: 1 MTIDIQYVQMPTSEAMNELLSAKLDRLATKYDWIIRAQVHFKQENDPTGKGKICEMELSA 60 Query: 57 PNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEAR 95 P + A +D A + I LE+QL+K + R Sbjct: 61 PGPRIFAQSNEDDFEKAAAKTIKDLEKQLSKRKAIMNKR 99 >UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax=Anaplasma centrale str. Israel RepID=D1AUL6_ANACI Length = 197 Score = 70.5 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRL-AKLEKWQTH--LINPHIILSKEPQGFVADATINTP 57 M + I + + T +I+ +V + + + + K+ IN ++++KE A +I Sbjct: 1 MNIIIACRGYKATASIKSYVENSIISHVGKYLRDSPEINARVVMAKEAHMLTACVSICED 60 Query: 58 NGVLV-ASGKHEDMYTAINELINKLERQLNKLQ-HKGEARRAATSVKD 103 + V AS + +Y A+++ + + +L K + K + R +V+D Sbjct: 61 HHEFVKASKSADTVYKAVDDAVAHIASKLRKYKGEKIDRHRKLRAVRD 108 >UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplasma marginale RepID=B9KIL8_ANAMF Length = 104 Score = 70.5 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 1 MTMNITSKQMEITPAIRQHVADRLA-KLEKWQTHL--INPHIILSKEPQGFVADATINTP 57 M + IT + + T +I+ +V D ++ L K+ IN ++++KE F A +I+ Sbjct: 1 MNVIITCRGYKATASIKSYVEDSISSHLGKYLHDSPQINVRVVMAKEAHMFTACVSIHED 60 Query: 58 NGVLV-ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATS 100 + V AS E +Y A++ + + L K + + + + Sbjct: 61 HHEFVNASKSAETVYKAVDAAVTHVANGLRKYKEEKTDKNHTAN 104 >UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RTG4_9PROT Length = 128 Score = 70.1 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 8/120 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQT-HLINPHIILS-----KEPQGFVADATI 54 M + I ++ +++ +R+HV RL W H+ + LS + + + Sbjct: 1 MQIVIQARGFDLSAGLREHVERRLHFALDWAQYHVSRIVVSLSDINGPRGGEDKRCQIRV 60 Query: 55 NTPN-GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 113 + D+Y AI+ ++++ R L++ + R A E E Sbjct: 61 AMAGAPEVAIDDIESDLYLAIDRAVDRVGRTLSRRLARQREHRHDRPG-VARSAPEAAAE 119 >UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7L313_METC4 Length = 216 Score = 70.1 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQGFVADATINTPNGVL 61 + + S + + A+R+ + ++ K+ L + S++ G+ I+ + Sbjct: 10 IVVRSSSIGLGAALRERARAGVERVAAKYFGRLNAATVYFSRDGWGYRCTVNIDMGALRI 69 Query: 62 V-ASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK 102 V + + + K +QL +L+ + S + Sbjct: 70 VTGESLGFCCHAVFDAAMRKAAKQLRRLKRALRDDKLPRSGR 111 >UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3V7_9NEIS Length = 181 Score = 69.7 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIIL------SKEPQGFVADATINT 56 + I + + + A+ H+ +L KLE++ LI ++ + S + + + + Sbjct: 5 LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVGLPHRHSNQGEHYFVQIDMTA 64 Query: 57 PNGVLVASGK-HEDMYTAINELINKLERQLNKL 88 P +V++ + HED+Y A+ + + R L Sbjct: 65 PGTEVVSNRQNHEDVYVALRDAFDAARRMLEDH 97 >UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Campylobacterales RepID=Q30TL0_SULDN Length = 109 Score = 69.3 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 M + + +K + ++ + H+ +A +K+ + ++ L KE +G + + I+ + Sbjct: 1 MNVQVHAKDITLSANAKGHIETAIAAFKKYSLDITTVNVNLKKEKKGVLVEFDIHIAHSE 60 Query: 61 -LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 109 +V + ED+ TAI+ I++ + L +L + + +A TS+K+ VEE Sbjct: 61 PVVINQADEDLDTAIDLAIDRASKALRRLHDRVVSHKA-TSLKEIEVVEE 109 >UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M130_ACIFD Length = 182 Score = 68.9 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 M +++ + +T R HV DR+A+LEK+ + + + V + T Sbjct: 1 MAVDLRCRGCTLTEQQRAHVEDRIARLEKYLGAPERVEVHVERAGNPANPDRVVTEVTYV 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVE 108 V+ A G E + + +L+R+L +L+ + AR A E Sbjct: 61 VSKAVVRARGVGETELESFDRAEERLKRRLERLKGRLVARSHPHHRGGAEAPE 113 >UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa RepID=D2NS77_9MICC Length = 213 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ----GFVADATINTP 57 +NI + +++T + ++V D++ K + ++ + + SK+ + T+ Sbjct: 4 EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHLGGESIRVEITVVGT 63 Query: 58 NGVLVASGKHEDMYTAINELINK 80 VL + + D + +E K Sbjct: 64 GPVLRSEAQGHDKFAVFDETYGK 86 >UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Orientia tsutsugamushi RepID=B3CQ21_ORITI Length = 116 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 1 MTMNITS--KQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKE-PQGFVADATIN- 55 M + I+ + + + Q+V ++ + K+ +L P++ SKE F +N Sbjct: 1 MNIIISGSPQYNSVKFNLNQYVNRKIINVANKYFDNLKAPNVHFSKEEHNQFKCHIVVNP 60 Query: 56 --TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAA 98 + ++ ++G D++ + + KLE+QL + + K + + A Sbjct: 61 ITKQHRIINSTGYSNDVFASFDLARVKLEQQLRRYKSKLKDKHAK 105 >UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Bifidobacterium RepID=B8DT99_BIFA0 Length = 228 Score = 68.5 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG------FVADATI 54 M + +T + ++I R V ++ ++ ++LS E + T+ Sbjct: 1 MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRLHDTAVRVELTV 60 Query: 55 NTPNGVLVASGKHEDMYTAINELINKL 81 + V+ A D +A++ ++KL Sbjct: 61 VAGSTVVRAEASSLDEVSALDLALDKL 87 >UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XP15_9FLAO Length = 120 Score = 68.5 bits (167), Expect = 7e-11, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ-----GFVADATIN 55 M N + + A+ ++L KL ++ + E G +A ++ Sbjct: 20 MNYNFEYHDVAASAALEDFTKEQLDKLVNKYDFIVRADVFFKTENTSSDETGKIAGIRLS 79 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR 96 P L A + + ++ E +L QL K + K ++ Sbjct: 80 APGPRLFADHSSKSFHESVKEATRELNIQLKKRKDKMKSHH 120 >UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula baltica RepID=Q7UMU4_RHOBA Length = 113 Score = 68.1 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGF-VADATINT-PN 58 M +N++++ + P + V ++ KL + + + + E + I+ + Sbjct: 1 MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60 Query: 59 GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANF 106 L+A + + A++ I K E+QL KL+ K RA + Sbjct: 61 DDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEHRATAHKHIESV 108 >UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G3G6_SORC5 Length = 191 Score = 68.1 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 51/116 (43%), Gaps = 9/116 (7%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE------PQGFVADATI 54 M + +T + + +P++ + + ++ K+E++ H+ + +++ ++ + + Sbjct: 1 MQVELTFRHIGKSPSLEELIREQANKIERFNDHINSCAVVVERDHASMGTGGEYRVRVDL 60 Query: 55 NTPN-GVLVASGKHED--MYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 + +V+ + + A+ ++ + RQL KL + + A +D V Sbjct: 61 HVAGKHEIVSEERAARNLLPAAVRDVFQRAGRQLKKLADEHRSEVKAHPAQDTAGV 116 >UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S30EA n=10 Tax=Sphingomonadales RepID=C8WD98_ZYMMN Length = 200 Score = 68.1 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKL-EKWQTHLINPHIILSKEPQGFV-ADATIN-TP 57 M + I+ Q++ A+R++V D L+++ K+ ++ + + D I+ Sbjct: 1 MDIRISGHQIDTGAALREYVNDHLSQIVSKYFPKCLSASVTFGNRRHAIISCDIIIHAMR 60 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFV 107 + +L ASG +D + A ++ K+E+QL + + + R + Sbjct: 61 DIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQTRIQQNTPSIDEAA 110 >UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DL86_AZOVD Length = 189 Score = 68.1 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 14/120 (11%) Query: 3 MNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFV------ADATINT 56 + I Q+E +PAI H+ ++ +LE++ +I + + + Sbjct: 5 VQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHQGRLYQVKVHLTL 64 Query: 57 PNGVLVA------SGKHEDMYTAINELINKLERQLNKL--QHKGEARRAATSVKDANFVE 108 P+G + + HED Y AI + + RQL + + E + + ++ E Sbjct: 65 PDGDIHSSQAHHDEHAHEDPYVAIRDSFRAVRRQLEDYARKRRAEVKSHEPAQQEGRVSE 124 >UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=5 Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1 Length = 179 Score = 67.4 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQG-----FVADATIN 55 M + IT+K + R ++ ++ ++ + + I L +E F+ AT+N Sbjct: 1 MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRSQADHFILKATLN 60 Query: 56 TPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAAT 99 T VL A + E++ TA + + L +Q++ + K E + Sbjct: 61 TGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKMEVKARNR 104 >UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Methylobacterium RepID=B1Z8J5_METPB Length = 163 Score = 67.4 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 2/112 (1%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLE-KWQTHLINPHIILSKEPQGFVADATINTPN-G 59 + + S +++ + + + ++ K+ +L + ++E G+ + Sbjct: 9 NILVQSSNVDLGSVLPDYARAGIMQVASKYIGNLNIAAVHFNREGGGYRCTVNLQMGALP 68 Query: 60 VLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVE 111 ++ H + Y A + K+ +QL + + + + K E E Sbjct: 69 MMSGEADHRNAYAAFRRALEKVAKQLRRAKRELREDKPQRLDKGIFLYEPGE 120 >UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJM4_9GAMM Length = 115 Score = 67.0 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILS-----KEPQGFVADATI 54 M + I SK +++TP++R +V RL+ L + ++LS K + Sbjct: 1 MQIEIRSKNIDMTPSLRDYVRRRLSFALGARAGQIQRVQVMLSDINGPKGGNDKHCRILV 60 Query: 55 NTPN-GVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRA 97 N P +V ++ AI+ + R L K K + R Sbjct: 61 NVPYIKDVVIEDCQTELKGAIDRAAARTSRTLTKRLMKLQKIRQ 104 >UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW75_CHLT3 Length = 109 Score = 66.6 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Query: 2 TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ----GFVADATINTP 57 + T + I + D + K+ T +++ HIIL + +A+ + P Sbjct: 12 NVQFTLRHSSNHRDIEAYAKDAIKAFHKYYTDILDCHIILDHQKNDKEQNKIAEIKAHVP 71 Query: 58 NGVLVASGKHEDMYTAINELINKLERQLNKLQHK 91 + V+ + AI+ ++ + +QL K + K Sbjct: 72 SHTFVSKEQGPTYEVAIDTCVSNICKQLKKHRDK 105 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.177 0.488 Lambda K H 0.267 0.0541 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 828,888,523 Number of Sequences: 3077464 Number of extensions: 39138892 Number of successful extensions: 165198 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 603 Number of HSP's successfully gapped in prelim test: 212 Number of HSP's that attempted gapping in prelim test: 163920 Number of HSP's gapped (non-prelim): 863 length of query: 113 length of database: 1,040,396,356 effective HSP length: 80 effective length of query: 33 effective length of database: 794,199,236 effective search space: 26208574788 effective search space used: 26208574788 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.5 bits) S2: 88 (38.1 bits)