17 c1pjrA_ Probab=98.93   E-value=6.4e-08  Score=70.61  Aligned_columns=128  Identities=23%

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CEEEEECCCHHHHHHCCCCCCCHHHHHHHHHH-
Q ss_conf             899999999961138469997589860889999999999981996--58999737816653134467998999999999-
Q batch____       152 RNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV--DRIIVTRPVLQADEDLGFLPGDIAEKFAPYFR-  228 (354)
Q Consensus       152 rn~~Q~~yl~Ai~s~~LV~i~GpAGTGKTlLAla~al~~L~~~~~--~kIIItRPtV~agedLGfLPGdl~EKl~P~l~-  228 (354)
                      .|++|..++.+  ....+++.||||||||.+.+.....++..+..  .+|+++.|+..|...+       .+++.-++. 
T Consensus        12 L~~~Q~~ai~~--~~~~~lV~GppGTGKT~~l~~~i~~ll~~~~~~~~~ILv~s~tn~A~d~~-------~~ri~~~~~~   82 (623)
T c1pjrA_          12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREM-------RERVQSLLGG   82 (623)
T ss_dssp             SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHH-------HHHHHHHHGG
T ss_pred             CCHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEECCCHHHHHHH-------HHHHHHHHCC
T ss_conf             38898999958--89978999488986779999999999980899977878974698999999-------9999996101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q batch____       229 --------------------------------------------------------------------------------  228 (354)
Q Consensus       229 --------------------------------------------------------------------------------  228 (354)
                                                                                                      
T Consensus        83 ~~~~~~i~T~~sf~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (623)
T c1pjrA_          83 AAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFA  162 (623)
T ss_dssp             GGTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHT
T ss_pred             CCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             10276897527999999987288749898972779899999999999863989000788999999999975189978963


Q ss_pred             -----------------------------HHHHHHHHHCCCCHHHHHHHHCCCCEEEEECHHHCCCCCCCCEEEEECCCC
Q ss_conf             -----------------------------999999986295267888641258589963122068875664899966132
Q batch____       229 -----------------------------PVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQN  279 (354)
Q Consensus       229 -----------------------------pi~D~L~~ll~~~~~~~~~~~~~g~IEi~playiRGRTL~n~~IIIDEAQN  279 (354)
                                                   .+..+...+...............                  ++.+||+|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~  224 (623)
T c1pjrA_         163 KRYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQ------------------YIHIDEYQD  224 (623)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCS------------------EEEESSGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCC------------------EEEEHHHHC
T ss_conf             10268999999999999988569876014899999994159899985002487------------------154211222


Q ss_pred             CCHHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf             999999999984889878999788157
Q batch____       280 VTAAQMKMFLTRLGENVTVIVNGDITQ  306 (354)
Q Consensus       280 lt~~emK~iLTRiGenSKIVl~GD~~Q  306 (354)
                      ++..+...+..-..+...+.++||+.|
T Consensus       225 ~~~~~~~~~~~l~~~~~~~~~~g~~~q  251 (623)
T c1pjrA_         225 TNRAQYTLVKKLAERFQNICAVGDADQ  251 (623)
T ss_dssp             CCHHHHHHHHHHHTTTCCEEEEECGGG
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             998999999987156985999822442