Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	G	A	R	L	H	T	L	L	P	E	L	T	T	R	Q	S	V	M	V	V	G	A	A	V	I	D	V	I	A	D	A	Y	A	L	P	W	R	G	C	D	I	E	L	K	Q	Q	S	V	N	V	G	G	C	A	L	N	I	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	A	L	K	R	L	G	I	E	A	G	N	A	L	P	L	G	Q	G	V	W	A	E	M	I	R	N	R	M	A	K	E	G	L	I	S	L	I	D	N	A	E	G	D	N	G	W	C	L	A	L	V	E	P	D	G	E	R	T	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	S	F	S	G	V	E	N	Q	W	N	R	Q	W	L	A	R	L	T	V	A	P	G	S	L	L	Y	F	S	G	Y	Q	L	A	S	P	C	G	E	L	L	V	E	W	L	E	E	L	Q	D	V	T	P	F	I	D	F	G	P	R
Secondary structure
SS confidence
Disorder																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	G	D	I	P	D	A	L	L	A	R	I	M	A	C	R	P	L	V	S	L	N	R	Q	E	A	E	I	A	A	E	R	F	A	L	S	A	E	I	T	T	L	G	K	Q	W	Q	E	K	F	A	A	P	L	I	V	R	L	D	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	G	A	W	Y	F	S	N	D	A	S	G	C	I	P	A	F	P	T	Q	V	V	D	T	I	G	A	G	D	S	H	A	G	G	V	L	A	G	L	A	S	G	L	P	L	A	D	A	V	L	L	G	N	A	V	A	S	W	V	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Sequence		G	H	R	G	G	D	C	A	P	T	R	E	E	L	L	L	A	H	K	N	V
Secondary structure
SS confidence
Disorder									?											?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1rkd chain A Region: 17 - 320 Aligned: 297 Modelled: 304 Confidence: 100.0% Identity: 23% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3pl2 chain D Region: 15 - 318 Aligned: 296 Modelled: 300 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 1vm7 chain A Region: 17 - 321 Aligned: 294 Modelled: 305 Confidence: 100.0% Identity: 21% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3go6 chain B Region: 17 - 319 Aligned: 278 Modelled: 285 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 3kzh chain A Region: 15 - 321 Aligned: 299 Modelled: 307 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 2rbc chain A Region: 16 - 319 Aligned: 294 Modelled: 299 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 3in1 chain A Region: 18 - 321 Aligned: 300 Modelled: 304 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Phyre2 PDB 2c49 chain A Region: 17 - 320 Aligned: 289 Modelled: 304 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Phyre2 PDB 1v19 chain A Region: 17 - 318 Aligned: 288 Modelled: 302 Confidence: 100.0% Identity: 25% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3iq0 chain B Region: 17 - 320 Aligned: 297 Modelled: 304 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli Phyre2 PDB 2abq chain A domain 1 Region: 19 - 321 Aligned: 294 Modelled: 303 Confidence: 100.0% Identity: 20% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2qcv chain A Region: 13 - 321 Aligned: 300 Modelled: 302 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 2pkk chain A Region: 13 - 319 Aligned: 295 Modelled: 307 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 3cqd chain B Region: 17 - 321 Aligned: 298 Modelled: 302 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 2jg1 chain C Region: 14 - 321 Aligned: 302 Modelled: 301 Confidence: 100.0% Identity: 12% PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate Phyre2 PDB 3b1q chain D Region: 18 - 320 Aligned: 288 Modelled: 303 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine Phyre2 PDB 2xtb chain A Region: 13 - 306 Aligned: 293 Modelled: 294 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator Phyre2 PDB 1bx4 chain A Region: 15 - 313 Aligned: 297 Modelled: 299 Confidence: 100.0% Identity: 17% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2nwh chain A Region: 17 - 321 Aligned: 292 Modelled: 305 Confidence: 100.0% Identity: 19% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 2f02 chain A domain 1 Region: 19 - 321 Aligned: 298 Modelled: 297 Confidence: 100.0% Identity: 17% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1qo8 chain A Region: 1 - 73 Aligned: 45 Modelled: 45 Confidence: 85.1% Identity: 31% PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase Phyre2 1 d1rkda_ 2 c3pl2D_ 3 d1vm7a_ 4 c3go6B_ 5 c3kzhA_ 6 c2rbcA_ 7 c3in1A_ 8 c2c49A_ 9 d1v19a_ 10 c3iq0B_ 11 d2abqa1 12 c2qcvA_ 13 c2pkkA_ 14 c3cqdB_ 15 c2jg1C_ 16 c3b1qD_ 17 c2xtbA_ 18 d1bx4a_ 19 c2nwhA_ 20 d2f02a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 c1qo8A_ 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1rkda_ 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 2 c3pl2D_ 100.0 18 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 3 d1vm7a_ 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 4 c3go6B_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 5 c3kzhA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 6 c2rbcA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 7 c3in1A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 8 c2c49A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 9 d1v19a_ 100.0 25 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 10 c3iq0B_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 11 d2abqa1 100.0 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 12 c2qcvA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 13 c2pkkA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 14 c3cqdB_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 15 c2jg1C_ 100.0 12 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 16 c3b1qD_ 100.0 23 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 17 c2xtbA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 18 d1bx4a_ 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 19 c2nwhA_ 100.0 19 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 20 d2f02a1 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 21 c2varB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 22 d2fv7a1 not modelled 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 23 d2absa1 not modelled 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 24 c2absA_ not modelled 100.0 19 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 25 c3i3yB_ not modelled 100.0 22 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 26 d2dcna1 not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 27 c2jg5B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 28 c3gbuD_ not modelled 100.0 19 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 29 c3ktnA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 30 c3looC_ not modelled 100.0 18 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 31 d2afba1 not modelled 100.0 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 32 c2qhpA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 33 d1tyya_ not modelled 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 34 c3b3lC_ not modelled 100.0 20 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 35 c3bf5A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 36 c1tz6B_ not modelled 100.0 23 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 37 c3lkiA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 38 c3kd6B_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 39 c3julA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 40 d2ajra1 not modelled 100.0 12 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 41 c3lhxA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 42 d1vk4a_ not modelled 100.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 43 c3hj6B_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 44 c2ddmA_ not modelled 99.9 25 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 c2i5bC_ not modelled 99.8 18 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 46 c3mbjA_ not modelled 99.8 13 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 47 d1ub0a_ not modelled 99.7 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 48 d1lhpa_ not modelled 99.7 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 49 c3ibqA_ not modelled 99.7 13 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 50 d1vi9a_ not modelled 99.7 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 51 d1jxha_ not modelled 99.5 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 52 c3rm5B_ not modelled 99.5 14 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 53 c3dzvB_ not modelled 99.2 14 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 54 d1kyha_ not modelled 99.1 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 55 d1v8aa_ not modelled 99.1 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 56 d2ax3a1 not modelled 98.9 12 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 57 d1gc5a_ not modelled 98.8 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 58 d1ekqa_ not modelled 98.6 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 59 d1ua4a_ not modelled 98.6 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 60 d1l2la_ not modelled 98.6 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 61 c2r3bA_ not modelled 98.5 13 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 62 c2ax3A_ not modelled 98.4 9 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 63 c3drwA_ not modelled 98.3 20 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 64 c3k5wA_ not modelled 98.2 14 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 65 d1u2xa_ not modelled 98.2 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 66 c3nm3D_ not modelled 98.2 12 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 67 c3bgkA_ not modelled 98.1 8 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 68 c1qo8A_ 85.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 69 c1d4cB_ not modelled 83.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:flavocytochrome c fumarate reductase; PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1 70 c2f00A_ not modelled 82.6 28 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc 71 c1c0iA_ not modelled 81.3 30 PDB header:oxidoreductase Chain: A: PDB Molecule:d-amino acid oxidase; PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules 72 c1jrxA_ not modelled 78.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 73 d1p3da1 not modelled 73.7 30 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 74 c2e1mA_ not modelled 69.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 75 d1v59a1 not modelled 69.0 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 76 d1d4ca2 not modelled 67.6 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 77 c1v59B_ not modelled 67.5 21 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ 78 d1c0pa1 not modelled 65.4 30 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 79 c1yq4A_ not modelled 65.4 39 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone 80 d1trba2 not modelled 64.5 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 81 d1reoa1 not modelled 64.5 42 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 82 d1dxla1 not modelled 61.6 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 83 c3da1A_ not modelled 61.4 22 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167. 84 d1ryia1 not modelled 60.6 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 85 d1x94a_ not modelled 58.9 12 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 86 d3lada1 not modelled 58.7 38 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 87 d1h6va2 not modelled 57.9 31 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 88 d2iida1 not modelled 55.8 39 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 89 c1ps9A_ not modelled 55.2 38 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 90 c1f8sA_ not modelled 54.4 41 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 91 c2zxiC_ not modelled 53.0 27 PDB header:fad-binding protein Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: structure of aquifex aeolicus gida in the form ii crystal 92 d1trba1 not modelled 52.6 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 93 c3kljA_ not modelled 52.3 29 PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum 94 c3v76A_ not modelled 51.7 38 PDB header:flavoprotein Chain: A: PDB Molecule:flavoprotein; PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti 95 d1d7ya2 not modelled 51.6 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 96 d1lpfa1 not modelled 50.5 38 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 97 c3nlcA_ not modelled 50.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147 98 c1vdcA_ not modelled 50.2 25 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase 99 d1vdca1 not modelled 50.0 25 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 100 d1qo8a2 not modelled 49.6 31 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 101 d1ps9a3 not modelled 49.3 38 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 102 d1y0pa2 not modelled 49.0 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 103 c2hkoA_ not modelled 49.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1 104 d1d5ta1 not modelled 48.8 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 105 c3g05B_ not modelled 48.6 24 PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg 106 c1f6mF_ not modelled 47.6 22 PDB header:oxidoreductase Chain: F: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+ 107 c2rghA_ not modelled 46.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase 108 c3i3lA_ not modelled 46.3 27 PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase 109 c2gqfA_ not modelled 45.5 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd 110 c3lzxB_ not modelled 45.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase 2; PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii) 111 d3grsa2 not modelled 44.5 28 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 112 c2v1dA_ not modelled 44.5 25 PDB header:oxidoreductase/repressor Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition 113 c2xagA_ not modelled 44.5 25 PDB header:transcription Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine 114 d2dw4a2 not modelled 43.7 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 115 d2ftsa3 not modelled 43.4 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 116 c1v0jB_ not modelled 43.1 33 PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: udp-galactopyranose mutase from mycobacterium tuberculosis 117 c3k30B_ not modelled 42.4 50 PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex 118 c3k5iB_ not modelled 42.2 24 PDB header:lyase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole carboxylase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthase from2 aspergillus clavatus in complex with adp and 5-3 aminoimadazole ribonucleotide 119 c1tytA_ not modelled 42.1 30 PDB header:oxidoreductase Chain: A: PDB Molecule:trypanothione reductase, oxidized form; PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution 120 c2v6oA_ not modelled 41.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin glutathione reductase; PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0