BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (102 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B4THR7 Acid shock protein n=38 Tax=Proteobacteria RepID... 69 6e-11 UniRef50_Q8ZE65 Acid shock protein 1 n=16 Tax=Proteobacteria Rep... 53 4e-06 UniRef50_A4WA61 Acid shock protein n=30 Tax=Enterobacteriaceae R... 45 6e-04 UniRef50_A6TA12 Acid shock protein n=15 Tax=Enterobacteriaceae R... 44 0.002 >UniRef50_B4THR7 Acid shock protein n=38 Tax=Proteobacteria RepID=ASR_SALHS Length = 83 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/64 (75%), Positives = 48/64 (75%), Gaps = 10/64 (15%) Query: 1 MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTT----HHKKQHKAAPAQK 56 MKKVLALVVAAAMGLSSAAFAAE T TPA TAT PAKTT HHKKQHK QK Sbjct: 1 MKKVLALVVAAAMGLSSAAFAAE-TATPAKTAT-----PAKTTQNTQHHKKQHKKTVEQK 54 Query: 57 AQAA 60 AQAA Sbjct: 55 AQAA 58 >UniRef50_Q8ZE65 Acid shock protein 1 n=16 Tax=Proteobacteria RepID=ASR1_YERPE Length = 94 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/99 (47%), Positives = 52/99 (52%), Gaps = 18/99 (18%) Query: 1 MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKA-----APAKTTHHKKQHKAAPAQ 55 MK VL L+VAA + L S AFAA+T T A A AKT HHKK AQ Sbjct: 1 MKTVLTLIVAATLSLFSVAFAADTVVPQTTPTATAPAPAVHNASAKTMHHKK------AQ 54 Query: 56 KAQAAKKHHKNTKAEQKAPEQKAQAAKKHAK-KHSHQQP 93 K K HK APEQKAQAA+KH K HSH+ P Sbjct: 55 KPNTIKNTHKT------APEQKAQAAQKHHKAAHSHKAP 87 >UniRef50_A4WA61 Acid shock protein n=30 Tax=Enterobacteriaceae RepID=ASR_ENT38 Length = 132 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 1 MKKVLALVVAAAMGLSSAAFAAE 23 MKKVLALVVAAAMGLSSAAFAAE Sbjct: 1 MKKVLALVVAAAMGLSSAAFAAE 23 >UniRef50_A6TA12 Acid shock protein n=15 Tax=Enterobacteriaceae RepID=A6TA12_KLEP7 Length = 97 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/23 (91%), Positives = 22/23 (95%) Query: 1 MKKVLALVVAAAMGLSSAAFAAE 23 MKKVLALVVAAAMGLSS AFAA+ Sbjct: 1 MKKVLALVVAAAMGLSSVAFAAD 23 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8ZE65 Acid shock protein 1 n=16 Tax=Proteobacteria Rep... 48 1e-04 Sequences not found previously or not previously below threshold: UniRef50_B4THR7 Acid shock protein n=38 Tax=Proteobacteria RepID... 41 0.009 UniRef50_A4UAD8 Cell-envelope associated proteinase n=6 Tax=Lact... 39 0.059 CONVERGED! >UniRef50_Q8ZE65 Acid shock protein 1 n=16 Tax=Proteobacteria RepID=ASR1_YERPE Length = 94 Score = 47.8 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 47/99 (47%), Positives = 52/99 (52%), Gaps = 18/99 (18%) Query: 1 MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKA-----APAKTTHHKKQHKAAPAQ 55 MK VL L+VAA + L S AFAA+T T A A AKT HHKK AQ Sbjct: 1 MKTVLTLIVAATLSLFSVAFAADTVVPQTTPTATAPAPAVHNASAKTMHHKK------AQ 54 Query: 56 KAQAAKKHHKNTKAEQKAPEQKAQAAKKHAK-KHSHQQP 93 K K HK APEQKAQAA+KH K HSH+ P Sbjct: 55 KPNTIKNTHKT------APEQKAQAAQKHHKAAHSHKAP 87 >UniRef50_B4THR7 Acid shock protein n=38 Tax=Proteobacteria RepID=ASR_SALHS Length = 83 Score = 41.2 bits (94), Expect = 0.009, Method: Composition-based stats. Identities = 45/82 (54%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 1 MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAA 60 MKKVLALVVAAAMGLSSAAFAAET T T T HHKKQHK QKAQAA Sbjct: 1 MKKVLALVVAAAMGLSSAAFAAETATP--AKTATPAKTTQNTQHHKKQHKKTVEQKAQAA 58 Query: 61 KKHHKNTKAEQKAPEQKAQAAK 82 KKH K + A ++ Sbjct: 59 KKHQKKDGKKAPAKSTSKTTSQ 80 >UniRef50_A4UAD8 Cell-envelope associated proteinase n=6 Tax=Lactobacillus RepID=A4UAD8_LACHE Length = 1786 Score = 38.5 bits (87), Expect = 0.059, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 8/82 (9%) Query: 21 AAETTTTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQA 80 +++ TP + APAK + K A A + KK A P Q A+ Sbjct: 1529 SSKPAVTPTKPEGGKEVAPAKPS------KPASATQPTTGKKEESGKPA--ATPAQPAKP 1580 Query: 81 AKKHAKKHSHQQPAKPAAQPAA 102 A ++ + QP++PA QP A Sbjct: 1581 ASENNQASQATQPSQPAGQPVA 1602 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.295 0.0998 0.249 Lambda K H 0.267 0.0303 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,746,256 Number of Sequences: 3077464 Number of extensions: 7896374 Number of successful extensions: 194311 Number of sequences better than 1.0e-01: 116 Number of HSP's better than 0.1 without gapping: 99 Number of HSP's successfully gapped in prelim test: 424 Number of HSP's that attempted gapping in prelim test: 189972 Number of HSP's gapped (non-prelim): 3822 length of query: 102 length of database: 1,040,396,356 effective HSP length: 71 effective length of query: 31 effective length of database: 821,896,412 effective search space: 25478788772 effective search space used: 25478788772 T: 11 A: 40 X1: 16 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.2 bits) S2: 86 (38.2 bits)