BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (108 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P75734 Uncharacterized lipoprotein ybfN n=107 Tax=Enter... 221 6e-57 UniRef50_C8T1I0 YbfN protein n=7 Tax=Enterobacteriaceae RepID=C8... 186 3e-46 UniRef50_D0ZCA8 Lipoprotein n=2 Tax=Edwardsiella RepID=D0ZCA8_EDWTE 103 1e-21 UniRef50_UPI00019F14E4 hypothetical protein CATC2_00240 n=1 Tax=... 40 0.027 >UniRef50_P75734 Uncharacterized lipoprotein ybfN n=107 Tax=Enterobacteriaceae RepID=YBFN_ECOLI Length = 108 Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE 60 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE Sbjct: 1 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE 60 Query: 61 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK 108 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK Sbjct: 61 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK 108 >UniRef50_C8T1I0 YbfN protein n=7 Tax=Enterobacteriaceae RepID=C8T1I0_KLEPR Length = 110 Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 84/107 (78%), Positives = 103/107 (96%) Query: 1 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE 60 MKK++LIA+MA+GLVAC S AP+ED++LK+AYSACINTA+G+P+KIEACQSVLNVLKK+ Sbjct: 1 MKKMLLIAMMAAGLVACTTSPAPKEDTKLKDAYSACINTAEGNPDKIEACQSVLNVLKKD 60 Query: 61 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNN 107 KQHQQFA+QESVRVLDYQQC++AT+TGNDQAVKA CD++W+EIRSNN Sbjct: 61 KQHQQFANQESVRVLDYQQCIQATRTGNDQAVKARCDQIWKEIRSNN 107 >UniRef50_D0ZCA8 Lipoprotein n=2 Tax=Edwardsiella RepID=D0ZCA8_EDWTE Length = 110 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 1/108 (0%) Query: 1 MKKLILIAIMASGLVACAQSTAP-QEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKK 59 MK ++ +A+ A L CAQ +AP QE LK+AYS CI A G +K+ +CQ++L V+K+ Sbjct: 1 MKAILGVAMAAIVLTGCAQPSAPSQEGQLLKQAYSKCIQDADGKHDKVASCQTILEVMKQ 60 Query: 60 EKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNN 107 K H FA +ESV VL+YQQC+ A +G A C K+WQEIR++N Sbjct: 61 SKAHAAFAQKESVSVLNYQQCIEAAMSGAGDNYTARCGKLWQEIRASN 108 >UniRef50_UPI00019F14E4 hypothetical protein CATC2_00240 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F14E4 Length = 64 Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 26/41 (63%) Query: 64 QQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIR 104 Q + E++ +DYQ+C++A TGN QA CD++ ++ R Sbjct: 24 QTHSSSETISPMDYQECIQAAMTGNGQAYNEKCDQILKDSR 64 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C8T1I0 YbfN protein n=7 Tax=Enterobacteriaceae RepID=C8... 164 1e-39 UniRef50_P75734 Uncharacterized lipoprotein ybfN n=107 Tax=Enter... 155 5e-37 UniRef50_D0ZCA8 Lipoprotein n=2 Tax=Edwardsiella RepID=D0ZCA8_EDWTE 144 1e-33 Sequences not found previously or not previously below threshold: UniRef50_UPI00019F14E4 hypothetical protein CATC2_00240 n=1 Tax=... 43 0.003 CONVERGED! >UniRef50_C8T1I0 YbfN protein n=7 Tax=Enterobacteriaceae RepID=C8T1I0_KLEPR Length = 110 Score = 164 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 84/107 (78%), Positives = 103/107 (96%) Query: 1 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE 60 MKK++LIA+MA+GLVAC S AP+ED++LK+AYSACINTA+G+P+KIEACQSVLNVLKK+ Sbjct: 1 MKKMLLIAMMAAGLVACTTSPAPKEDTKLKDAYSACINTAEGNPDKIEACQSVLNVLKKD 60 Query: 61 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNN 107 KQHQQFA+QESVRVLDYQQC++AT+TGNDQAVKA CD++W+EIRSNN Sbjct: 61 KQHQQFANQESVRVLDYQQCIQATRTGNDQAVKARCDQIWKEIRSNN 107 >UniRef50_P75734 Uncharacterized lipoprotein ybfN n=107 Tax=Enterobacteriaceae RepID=YBFN_ECOLI Length = 108 Score = 155 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE 60 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE Sbjct: 1 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE 60 Query: 61 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK 108 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK Sbjct: 61 KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK 108 >UniRef50_D0ZCA8 Lipoprotein n=2 Tax=Edwardsiella RepID=D0ZCA8_EDWTE Length = 110 Score = 144 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 1/108 (0%) Query: 1 MKKLILIAIMASGLVACAQSTAP-QEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKK 59 MK ++ +A+ A L CAQ +AP QE LK+AYS CI A G +K+ +CQ++L V+K+ Sbjct: 1 MKAILGVAMAAIVLTGCAQPSAPSQEGQLLKQAYSKCIQDADGKHDKVASCQTILEVMKQ 60 Query: 60 EKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNN 107 K H FA +ESV VL+YQQC+ A +G A C K+WQEIR++N Sbjct: 61 SKAHAAFAQKESVSVLNYQQCIEAAMSGAGDNYTARCGKLWQEIRASN 108 >UniRef50_UPI00019F14E4 hypothetical protein CATC2_00240 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F14E4 Length = 64 Score = 42.8 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 26/42 (61%) Query: 63 HQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIR 104 Q + E++ +DYQ+C++A TGN QA CD++ ++ R Sbjct: 23 QQTHSSSETISPMDYQECIQAAMTGNGQAYNEKCDQILKDSR 64 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.129 0.348 Lambda K H 0.267 0.0392 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,629,651 Number of Sequences: 3077464 Number of extensions: 11108715 Number of successful extensions: 40931 Number of sequences better than 1.0e-01: 5 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 40921 Number of HSP's gapped (non-prelim): 9 length of query: 108 length of database: 1,040,396,356 effective HSP length: 76 effective length of query: 32 effective length of database: 806,509,092 effective search space: 25808290944 effective search space used: 25808290944 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 87 (38.2 bits)