17/01/2012 16:03:06 : INFO  : Run start: Tue Jan 17 16:03:04 GMT 2012
17/01/2012 16:03:13 : INFO  : Initialised job
17/01/2012 16:03:15 : INFO  : Renaming log file 'phyre2_20120117_160302.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/ad2731f6424f9d1f/phyre_20120117_160302.log'
17/01/2012 16:03:17 : INFO  : Initialised job:
Sequence
>batch____
MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMR
SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIP
LDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIG
FTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERL
QALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTIT
DVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS
NVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYG
LMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGG
GVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKY
YGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS

17/01/2012 16:03:18 : INFO  : Checked sequence
17/01/2012 16:03:22 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 16:03:23 : INFO  : PSI-BLAST 3 iterations
17/01/2012 16:06:45 : INFO  : PSI-BLAST 5 iterations
17/01/2012 16:10:56 : INFO  : Finished PSI-BLAST
17/01/2012 16:10:59 : INFO  : Running Buildali to generate a3m file
17/01/2012 16:48:24 : INFO  : Converting to HMM
17/01/2012 16:48:38 : INFO  : Calibrating HMM
17/01/2012 16:49:06 : INFO  : Searching HMM database
17/01/2012 16:58:54 : INFO  : Finished buildali
17/01/2012 16:58:57 : INFO  : Predicting secondary structure
17/01/2012 16:59:12 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 16:59:15 : INFO  : Predicting Disordered regions
17/01/2012 16:59:22 : INFO  : Predicted Disorder (Disopred)
17/01/2012 16:59:25 : INFO  : Running memsat_svm check
17/01/2012 17:06:12 : INFO  : Globular protein
17/01/2012 17:06:14 : INFO  : Predicted Transmembrane (memsat_svm) ID 'ad2731f6424f9d1f'
17/01/2012 17:06:17 : INFO  : Initialising fold library search
17/01/2012 17:06:23 : INFO  : Initialised search input
17/01/2012 17:06:28 : INFO  : Building Ensemble models
17/01/2012 17:06:35 : INFO  : Building hh.c3oc2A_.model.1.pdb
17/01/2012 17:07:04 : INFO  : Building hh.c3pbqA_.model.2.pdb
17/01/2012 17:07:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ad2731f6424f9d1f/hh.c3pbqA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ad2731f6424f9d1f/c3pbqA_.2.pdb
17/01/2012 17:07:35 : INFO  : Building hh.c3ue3A_.model.3.pdb
17/01/2012 17:08:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ad2731f6424f9d1f/hh.c3ue3A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ad2731f6424f9d1f/c3ue3A_.4.pdb
17/01/2012 17:08:08 : INFO  : Building hh.c3equB_.model.4.pdb
17/01/2012 17:08:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ad2731f6424f9d1f/hh.c3equB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ad2731f6424f9d1f/c3equB_.6.pdb
17/01/2012 17:08:39 : INFO  : Building c3oc2A_.1.pdb
17/01/2012 17:09:08 : INFO  : Building c3pbqA_.2.pdb
17/01/2012 17:09:37 : INFO  : Building c1pmdA_.3.pdb
17/01/2012 17:09:56 : INFO  : Building c3ue3A_.4.pdb
17/01/2012 17:10:24 : INFO  : Building c1mwuA_.5.pdb
17/01/2012 17:10:52 : INFO  : Building c3equB_.6.pdb
17/01/2012 17:11:19 : INFO  : Building c1qmfA_.7.pdb
17/01/2012 17:11:49 : INFO  : Building c2wadB_.8.pdb
17/01/2012 17:12:19 : INFO  : Building c3lo7A_.9.pdb
17/01/2012 17:12:47 : INFO  : Building d1pyya4.10.pdb
17/01/2012 17:13:15 : INFO  : Building d1rp5a4.11.pdb
17/01/2012 17:13:43 : INFO  : Building d1vqqa3.12.pdb
17/01/2012 17:14:10 : INFO  : Building d2c5wb1.13.pdb
17/01/2012 17:14:37 : INFO  : Building d1k25a4.14.pdb
17/01/2012 17:15:07 : INFO  : Building c3udiA_.15.pdb
17/01/2012 17:15:36 : INFO  : Building c3dwkC_.16.pdb
17/01/2012 17:16:05 : INFO  : Building c3fwlA_.17.pdb
17/01/2012 17:16:36 : INFO  : Building c2bg1A_.18.pdb
17/01/2012 17:17:06 : INFO  : Building c2olvA_.19.pdb
17/01/2012 17:17:33 : INFO  : Building c2jciA_.20.pdb
17/01/2012 17:20:10 : INFO  : Finished HH model building
17/01/2012 17:20:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 17:21:58 : INFO  : html domain output complete ID 'ad2731f6424f9d1f'
17/01/2012 20:40:18 : INFO  : Run end  : Tue Jan 17 20:40:16 GMT 2012
