18/01/2012 22:48:24 : INFO  : Run start: Wed Jan 18 22:48:23 GMT 2012
18/01/2012 22:48:29 : INFO  : Initialised job
18/01/2012 22:48:30 : INFO  : Renaming log file 'phyre2_20120118_224823.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/phyre_20120118_224823.log'
18/01/2012 22:48:31 : INFO  : Initialised job:
Sequence
>batch____
MSQNDIIIRTHYKSPHRLHIDSDIPTPSSEPINQFARQLITLLDTSDLSSMLSYCVTQEF
TANCRKISQNCYSTALFTINFATSPIHTENILITLHYKKEIISLLLETTPIKANHLRSIL
DYIEQEQLTAEDRNHCMKLSKXSIEKKTIHPTVNLNGSACFLQSPSDAIFCRHLSLQYAL
DSLRNGKGKVNLIKHYSSVESIQQHVPLVRDAEFRALLRHPPAGSRVIASKDFGFALDIF
FCRMMANNVSHMSAILYIDNHTLSVRLRIKQSVYGQLNYVVSVYDPNDTNVAVRDTHRTA
RGFLSLDKFISSGPDAQTWADRYVRNCAIAILPLLPVGVPGAIFAGIASRMPFAPIHPSA
MLLIMATGQSQQLITLFKQLPILPEKEIIEIITAQNSVGTPALFLAMMNGHTDNVKIFMQ
EIQSLVDNHIIHEDNLVKLLQTKSANETPGLYISMLYGFDEIIDIFLNALTTPIAQELLN
KKLVMSILAMKIHDGEPGLYAAMENNHPLCVTRFLSKINGIAFKYKLSKANIMDLLKGAT
AQGTPALYIAMSKGNEDVVLSYISTLGAFAKKHSFSQHQLFTLLAAKNHDNMSAVHIAIH
HKHYKTVETYYAAINAISQSLSFSADEIKTYL

18/01/2012 22:48:32 : INFO  : Checked sequence
18/01/2012 22:48:35 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 22:48:36 : INFO  : PSI-BLAST 3 iterations
18/01/2012 22:50:56 : INFO  : PSI-BLAST 5 iterations
18/01/2012 22:57:04 : INFO  : Finished PSI-BLAST
18/01/2012 22:57:05 : INFO  : Running Buildali to generate a3m file
18/01/2012 23:17:41 : INFO  : Converting to HMM
18/01/2012 23:17:43 : INFO  : Calibrating HMM
18/01/2012 23:18:08 : INFO  : Searching HMM database
18/01/2012 23:32:30 : INFO  : Finished buildali
18/01/2012 23:32:31 : INFO  : Predicting secondary structure
18/01/2012 23:32:37 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 23:32:38 : INFO  : Predicting Disordered regions
18/01/2012 23:32:41 : INFO  : Predicted Disorder (Disopred)
18/01/2012 23:32:42 : INFO  : Running memsat_svm check
18/01/2012 23:36:00 : INFO  : Running memsat_svm full
18/01/2012 23:46:56 : INFO  : Predicted Transmembrane (memsat_svm) ID 'aced4d7fdb55803c'
18/01/2012 23:46:58 : INFO  : Initialising fold library search
18/01/2012 23:47:01 : INFO  : Initialised search input
18/01/2012 23:47:03 : INFO  : Building Ensemble models
18/01/2012 23:47:07 : INFO  : Building hh.d2ajaa1.model.1.pdb
18/01/2012 23:47:18 : INFO  : Building hh.d1n11a_.model.2.pdb
18/01/2012 23:47:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/hh.d1n11a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/d1n11a_.2.pdb
18/01/2012 23:47:29 : INFO  : Building hh.c1n11A_.model.3.pdb
18/01/2012 23:47:39 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/hh.c1n11A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/c1n11A_.3.pdb
18/01/2012 23:47:42 : INFO  : Building hh.c2fo1E_.model.4.pdb
18/01/2012 23:47:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/hh.c2fo1E_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/c2fo1E_.7.pdb
18/01/2012 23:47:55 : INFO  : Building hh.d2fo1e1.model.5.pdb
18/01/2012 23:48:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/hh.d2fo1e1.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/aced4d7fdb55803c/d2fo1e1.9.pdb
18/01/2012 23:48:08 : INFO  : Building d2ajaa1.1.pdb
18/01/2012 23:48:18 : INFO  : Building d1n11a_.2.pdb
18/01/2012 23:48:30 : INFO  : Building c1n11A_.3.pdb
18/01/2012 23:48:40 : INFO  : Building c2ajaA_.4.pdb
18/01/2012 23:48:51 : INFO  : Building c3keaB_.5.pdb
18/01/2012 23:49:02 : INFO  : Building c3ljnA_.6.pdb
18/01/2012 23:49:14 : INFO  : Building c2fo1E_.7.pdb
18/01/2012 23:49:25 : INFO  : Building d1s70b_.8.pdb
18/01/2012 23:49:36 : INFO  : Building d2fo1e1.9.pdb
18/01/2012 23:49:47 : INFO  : Building c2xaiD_.10.pdb
18/01/2012 23:49:58 : INFO  : Building d1wdya_.11.pdb
18/01/2012 23:50:09 : INFO  : Building c2f37B_.12.pdb
18/01/2012 23:50:19 : INFO  : Building d1uoha_.13.pdb
18/01/2012 23:50:30 : INFO  : Building c3jxiA_.14.pdb
18/01/2012 23:50:41 : INFO  : Building c3eu9B_.15.pdb
18/01/2012 23:50:51 : INFO  : Building c2vgeA_.16.pdb
18/01/2012 23:51:02 : INFO  : Building d1k1aa_.17.pdb
18/01/2012 23:51:13 : INFO  : Building c2f8xK_.18.pdb
18/01/2012 23:51:24 : INFO  : Building c3b7bB_.19.pdb
18/01/2012 23:51:36 : INFO  : Building c3d9hA_.20.pdb
18/01/2012 23:52:50 : INFO  : Finished HH model building
18/01/2012 23:52:51 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 23:53:48 : INFO  : html domain output complete ID 'aced4d7fdb55803c'
19/01/2012 00:26:27 : INFO  : Run end  : Thu Jan 19 00:26:26 GMT 2012
