Phyre 2 Results for P76205

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P76205
Date | Thu Jan 5 12:20:31 GMT 2012
Unique Job ID | aced4d7fdb55803c

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2ajaa1
Top template information
Fold:alpha-alpha superhelix Superfamily:Pseudo ankyrin repeat-like Family:Pseudo ankyrin repeat
Confidence and coverage
Confidence: | 100.0% | Coverage: | 34%
214 residues ( 34% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | Q | N | D | I | I | I | R | T | H | Y | K | S | P | H | R | L | H | I | D | S | D | I | P | T | P | S | S | E | P | I | N | Q | F | A | R | Q | L | I | T | L | L | D | T | S | D | L | S | S | M | L | S | Y | C | V | T | Q | E | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | A | N | C | R | K | I | S | Q | N | C | Y | S | T | A | L | F | T | I | N | F | A | T | S | P | I | H | T | E | N | I | L | I | T | L | H | Y | K | K | E | I | I | S | L | L | L | E | T | T | P | I | K | A | N | H | L | R | S | I | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | Y | I | E | Q | E | Q | L | T | A | E | D | R | N | H | C | M | K | L | S | K | X | S | I | E | K | K | T | I | H | P | T | V | N | L | N | G | S | A | C | F | L | Q | S | P | S | D | A | I | F | C | R | H | L | S | L | Q | Y | A | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | D | S | L | R | N | G | K | G | K | V | N | L | I | K | H | Y | S | S | V | E | S | I | Q | Q | H | V | P | L | V | R | D | A | E | F | R | A | L | L | R | H | P | P | A | G | S | R | V | I | A | S | K | D | F | G | F | A | L | D | I | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | F | C | R | M | M | A | N | N | V | S | H | M | S | A | I | L | Y | I | D | N | H | T | L | S | V | R | L | R | I | K | Q | S | V | Y | G | Q | L | N | Y | V | V | S | V | Y | D | P | N | D | T | N | V | A | V | R | D | T | H | R | T | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | R | G | F | L | S | L | D | K | F | I | S | S | G | P | D | A | Q | T | W | A | D | R | Y | V | R | N | C | A | I | A | I | L | P | L | L | P | V | G | V | P | G | A | I | F | A | G | I | A | S | R | M | P | F | A | P | I | H | P | S | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  | ? |  |  |  |  |  | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | M | L | L | I | M | A | T | G | Q | S | Q | Q | L | I | T | L | F | K | Q | L | P | I | L | P | E | K | E | I | I | E | I | I | T | A | Q | N | S | V | G | T | P | A | L | F | L | A | M | M | N | G | H | T | D | N | V | K | I | F | M | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | E | I | Q | S | L | V | D | N | H | I | I | H | E | D | N | L | V | K | L | L | Q | T | K | S | A | N | E | T | P | G | L | Y | I | S | M | L | Y | G | F | D | E | I | I | D | I | F | L | N | A | L | T | T | P | I | A | Q | E | L | L | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | K | K | L | V | M | S | I | L | A | M | K | I | H | D | G | E | P | G | L | Y | A | A | M | E | N | N | H | P | L | C | V | T | R | F | L | S | K | I | N | G | I | A | F | K | Y | K | L | S | K | A | N | I | M | D | L | L | K | G | A | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | A | Q | G | T | P | A | L | Y | I | A | M | S | K | G | N | E | D | V | V | L | S | Y | I | S | T | L | G | A | F | A | K | K | H | S | F | S | Q | H | Q | L | F | T | L | L | A | A | K | N | H | D | N | M | S | A | V | H | I | A | I | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | .
Sequence |  | H | K | H | Y | K | T | V | E | T | Y | Y | A | A | I | N | A | I | S | Q | S | L | S | F | S | A | D | E | I | K | T | Y | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2ajaa1 |

### PDB 2aja chain A domain 1

Region: 369 - 611
Aligned: 214
Modelled: 210
Confidence: 100.0%
Identity: 16%
Fold: alpha-alpha superhelix
Superfamily: Pseudo ankyrin repeat-like
Family: Pseudo ankyrin repeat

Phyre2
2 |
| d1n11a_ |

### PDB 1n11 chain A

Region: 400 - 612
Aligned: 168
Modelled: 168
Confidence: 100.0%
Identity: 35%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2
3 |
| c1n11A_ |

### PDB 1n11 chain A

Region: 400 - 612
Aligned: 168
Modelled: 168
Confidence: 100.0%
Identity: 35%
PDB header:structural protein
Chain: A: PDB Molecule:ankyrin;
PDBTitle: d34 region of human ankyrin-r and linker

Phyre2
4 |
| c2ajaA_ |

### PDB 2aja chain A

Region: 370 - 611
Aligned: 201
Modelled: 197
Confidence: 100.0%
Identity: 20%
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat family protein;
PDBTitle: x-ray structure of an ankyrin repeat family protein q5zsv02 from legionella pneumophila. northeast structural genomics3 consortium target lgr21.

Phyre2
5 |
| c3keaB_ |

### PDB 3kea chain B

Region: 392 - 623
Aligned: 169
Modelled: 168
Confidence: 100.0%
Identity: 19%
PDB header:viral protein
Chain: B: PDB Molecule:k1l;
PDBTitle: structure function studies of vaccinia virus host-range protein k12 reveal a novel ankyrin repeat interaction surface for k1s function

Phyre2
6 |
| c3ljnA_ |

### PDB 3ljn chain A

Region: 396 - 620
Aligned: 193
Modelled: 194
Confidence: 100.0%
Identity: 16%
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: ankyrin repeat protein from leishmania major

Phyre2
7 |
| c2fo1E_ |

### PDB 2fo1 chain E

Region: 396 - 611
Aligned: 171
Modelled: 170
Confidence: 100.0%
Identity: 25%
PDB header:gene regulation/signalling protein/dna
Chain: E: PDB Molecule:lin-12 protein;
PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna

Phyre2
8 |
| d1s70b_ |

### PDB 1s70 chain B

Region: 396 - 618
Aligned: 174
Modelled: 178
Confidence: 100.0%
Identity: 16%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2
9 |
| d2fo1e1 |

### PDB 2fo1 chain E domain 1

Region: 400 - 611
Aligned: 167
Modelled: 167
Confidence: 100.0%
Identity: 25%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2
10 |
| c2xaiD_ |

### PDB 2xai chain D

Region: 400 - 632
Aligned: 173
Modelled: 188
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: D: PDB Molecule:ankyrin repeat and socs box protein 9;
PDBTitle: crystal structure of ankyrin repeat and socs box-containing2 protein 9 (asb9) in complex with elonginb and elonginc

Phyre2
11 |
| d1wdya_ |

### PDB 1wdy chain A

Region: 398 - 618
Aligned: 192
Modelled: 192
Confidence: 99.9%
Identity: 21%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2
12 |
| c2f37B_ |

### PDB 2f37 chain B

Region: 395 - 612
Aligned: 201
Modelled: 203
Confidence: 99.9%
Identity: 13%
PDB header:membrane protein
Chain: B: PDB Molecule:transient receptor potential cation channel
PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2

Phyre2
13 |
| d1uoha_ |

### PDB 1uoh chain A

Region: 397 - 611
Aligned: 169
Modelled: 170
Confidence: 99.9%
Identity: 15%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2
14 |
| c3jxiA_ |

### PDB 3jxi chain A

Region: 359 - 615
Aligned: 236
Modelled: 242
Confidence: 99.9%
Identity: 14%
PDB header:membrane protein
Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel
PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain

Phyre2
15 |
| c3eu9B_ |

### PDB 3eu9 chain B

Region: 396 - 611
Aligned: 186
Modelled: 186
Confidence: 99.9%
Identity: 15%
PDB header:protein binding, methyl-lysine-binding p
Chain: B: PDB Molecule:huntingtin-interacting protein 14;
PDBTitle: the ankyrin repeat domain of huntingtin interacting protein 14

Phyre2
16 |
| c2vgeA_ |

### PDB 2vge chain A

Region: 394 - 611
Aligned: 174
Modelled: 174
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:rela-associated inhibitor;
PDBTitle: crystal structure of the c-terminal region of human iaspp

Phyre2
17 |
| d1k1aa_ |

### PDB 1k1a chain A

Region: 397 - 608
Aligned: 167
Modelled: 167
Confidence: 99.9%
Identity: 26%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2
18 |
| c2f8xK_ |

### PDB 2f8x chain K

Region: 401 - 612
Aligned: 162
Modelled: 162
Confidence: 99.9%
Identity: 19%
PDB header:transcription/dna
Chain: K: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence

Phyre2
19 |
| c3b7bB_ |

### PDB 3b7b chain B

Region: 401 - 616
Aligned: 171
Modelled: 171
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:euchromatic histone-lysine n-methyltransferase 1;
PDBTitle: euhmt1 (glp) ankyrin repeat domain (structure 1)

Phyre2
20 |
| c3d9hA_ |

### PDB 3d9h chain A

Region: 394 - 612
Aligned: 187
Modelled: 189
Confidence: 99.9%
Identity: 15%
PDB header:structural protein, protein binding
Chain: A: PDB Molecule:cdna flj77766, highly similar to homo sapiens
PDBTitle: crystal structure of the splice variant of human asb92 (hasb9-2), an ankyrin repeat protein

Phyre2
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99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2ajaa1 |
|  | 100.0 | 16 | Fold:alpha-alpha superhelix Superfamily:Pseudo ankyrin repeat-like Family:Pseudo ankyrin repeat
2 | d1n11a_ |
|  | 100.0 | 35 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
3 | c1n11A_ |
|  | 100.0 | 35 | PDB header:structural protein Chain: A: PDB Molecule:ankyrin; PDBTitle: d34 region of human ankyrin-r and linker
4 | c2ajaA_ |
|  | 100.0 | 20 | PDB header:protein binding Chain: A: PDB Molecule:ankyrin repeat family protein; PDBTitle: x-ray structure of an ankyrin repeat family protein q5zsv02 from legionella pneumophila. northeast structural genomics3 consortium target lgr21.
5 | c3keaB_ |
|  | 100.0 | 19 | PDB header:viral protein Chain: B: PDB Molecule:k1l; PDBTitle: structure function studies of vaccinia virus host-range protein k12 reveal a novel ankyrin repeat interaction surface for k1s function
6 | c3ljnA_ |
|  | 100.0 | 16 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: ankyrin repeat protein from leishmania major
7 | c2fo1E_ |
|  | 100.0 | 25 | PDB header:gene regulation/signalling protein/dna Chain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna
8 | d1s70b_ |
|  | 100.0 | 16 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
9 | d2fo1e1 |
|  | 100.0 | 25 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
10 | c2xaiD_ |
|  | 100.0 | 16 | PDB header:transcription Chain: D: PDB Molecule:ankyrin repeat and socs box protein 9; PDBTitle: crystal structure of ankyrin repeat and socs box-containing2 protein 9 (asb9) in complex with elonginb and elonginc
11 | d1wdya_ |
|  | 99.9 | 21 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
12 | c2f37B_ |
|  | 99.9 | 13 | PDB header:membrane protein Chain: B: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2
13 | d1uoha_ |
|  | 99.9 | 15 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
14 | c3jxiA_ |
|  | 99.9 | 14 | PDB header:membrane protein Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain
15 | c3eu9B_ |
|  | 99.9 | 15 | PDB header:protein binding, methyl-lysine-binding p Chain: B: PDB Molecule:huntingtin-interacting protein 14; PDBTitle: the ankyrin repeat domain of huntingtin interacting protein 14
16 | c2vgeA_ |
|  | 99.9 | 15 | PDB header:transcription Chain: A: PDB Molecule:rela-associated inhibitor; PDBTitle: crystal structure of the c-terminal region of human iaspp
17 | d1k1aa_ |
|  | 99.9 | 26 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
18 | c2f8xK_ |
|  | 99.9 | 19 | PDB header:transcription/dna Chain: K: PDB Molecule:neurogenic locus notch homolog protein 1; PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence
19 | c3b7bB_ |
|  | 99.9 | 18 | PDB header:transferase Chain: B: PDB Molecule:euchromatic histone-lysine n-methyltransferase 1; PDBTitle: euhmt1 (glp) ankyrin repeat domain (structure 1)
20 | c3d9hA_ |
|  | 99.9 | 15 | PDB header:structural protein, protein binding Chain: A: PDB Molecule:cdna flj77766, highly similar to homo sapiens PDBTitle: crystal structure of the splice variant of human asb92 (hasb9-2), an ankyrin repeat protein
21 | d1sw6a_ |
| not modelled | 99.9 | 16 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
22 | c1sw6A_ |
| not modelled | 99.9 | 16 | PDB header:transcription regulation Chain: A: PDB Molecule:regulatory protein swi6; PDBTitle: s. cerevisiae swi6 ankyrin-repeat fragment
23 | c1ycsB_ |
| not modelled | 99.9 | 17 | PDB header:complex (anti-oncogene/ankyrin repeats) Chain: B: PDB Molecule:53bp2; PDBTitle: p53-53bp2 complex
24 | c3ui2A_ |
| not modelled | 99.9 | 15 | PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic; PDBTitle: crystal structure of the cpsrp54 tail bound to cpsrp43
25 | d1iknd_ |
| not modelled | 99.9 | 16 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
26 | c2nyjA_ |
| not modelled | 99.9 | 11 | PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1
27 | d1oy3d_ |
| not modelled | 99.9 | 15 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
28 | c1oy3D_ |
| not modelled | 99.9 | 15 | PDB header:dna binding protein Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex
29 | c3ehrB_ |
| not modelled | 99.9 | 22 | PDB header:signaling protein Chain: B: PDB Molecule:osteoclast-stimulating factor 1; PDBTitle: crystal structure of human osteoclast stimulating factor
30 | c3t8kB_ |
| not modelled | 99.9 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein lebu_0176 from2 leptotrichia buccalis c-1013-b
31 | d1ot8a_ |
| not modelled | 99.9 | 19 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
32 | d1ixva_ |
| not modelled | 99.9 | 16 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
33 | d1dcqa1 |
| not modelled | 99.9 | 19 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
34 | c3jueA_ |
| not modelled | 99.9 | 15 | PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
35 | c2rfaA_ |
| not modelled | 99.9 | 20 | PDB header:membrane protein Chain: A: PDB Molecule:transient receptor potential cation channel subfamily v PDBTitle: crystal structure of the mouse trpv6 ankyrin repeat domain
36 | c3deoA_ |
| not modelled | 99.9 | 13 | PDB header:protein transport, membrane protein Chain: A: PDB Molecule:signal recognition particle 43 kda protein; PDBTitle: structural basis for specific substrate recognition by the2 chloroplast signal recognition particle protein cpsrp43
37 | c3hraA_ |
| not modelled | 99.9 | 20 | PDB header:structural protein Chain: A: PDB Molecule:ankyrin repeat family protein; PDBTitle: crystal structure of ef0377 an ankyrin repeat protein
38 | c2rfmB_ |
| not modelled | 99.9 | 15 | PDB header:protein binding Chain: B: PDB Molecule:putative ankyrin repeat protein tv1425; PDBTitle: structure of a thermophilic ankyrin repeat protein
39 | c2b0oF_ |
| not modelled | 99.8 | 16 | PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain
40 | c1dcqA_ |
| not modelled | 99.8 | 16 | PDB header:metal binding protein Chain: A: PDB Molecule:pyk2-associated protein beta; PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.
41 | c3twtD_ |
| not modelled | 99.8 | 19 | PDB header:signaling protein/peptide Chain: D: PDB Molecule:tankyrase-2; PDBTitle: crystal structure of arc4 from human tankyrase 2 in complex with2 peptide from human mcl1 (chimeric peptide)
42 | c2kbxA_ |
| not modelled | 99.8 | 15 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin-linked protein kinase; PDBTitle: solution structure of ilk-pinch complex
43 | c3lvrE_ |
| not modelled | 99.8 | 16 | PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
44 | d1ycsb1 |
| not modelled | 99.8 | 16 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
45 | d2a5ea_ |
| not modelled | 99.8 | 15 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
46 | c3c5rB_ |
| not modelled | 99.8 | 20 | PDB header:protein binding Chain: B: PDB Molecule:brca1-associated ring domain protein 1; PDBTitle: crystal structure of the bard1 ankyrin repeat domain and its2 functional consequences
47 | c2zgdA_ |
| not modelled | 99.8 | 20 | PDB header:de novo protein Chain: A: PDB Molecule:3 repeat synthetic ankyrin; PDBTitle: asn-hydroxylation stabilises the ankyrin repeat domain fold
48 | d1awcb_ |
| not modelled | 99.8 | 20 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
49 | c1ympB_ |
| not modelled | 99.8 | 14 | PDB header:transcription Chain: B: PDB Molecule:notch 1 protein; PDBTitle: the crystal structure of a partial mouse notch-1 ankyrin2 domain: repeats 4 through 7 preserve an ankyrin fold
50 | c1ympA_ |
| not modelled | 99.8 | 14 | PDB header:transcription Chain: A: PDB Molecule:notch 1 protein; PDBTitle: the crystal structure of a partial mouse notch-1 ankyrin2 domain: repeats 4 through 7 preserve an ankyrin fold
51 | c2jabC_ |
| not modelled | 99.8 | 20 | PDB header:de novo protein Chain: C: PDB Molecule:h10-2-g3; PDBTitle: a designed ankyrin repeat protein evolved to picomolar2 affinity to her2
52 | d1bi7b_ |
| not modelled | 99.8 | 19 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
53 | d1ihba_ |
| not modelled | 99.7 | 18 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
54 | d1myoa_ |
| not modelled | 99.7 | 15 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
55 | d1bd8a_ |
| not modelled | 99.7 | 13 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
56 | d1blxb_ |
| not modelled | 99.7 | 17 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Ankyrin repeat Family:Ankyrin repeat
57 | c2v5qC_ |
| not modelled | 99.7 | 20 | PDB header:transferase Chain: C: PDB Molecule:design ankyrin repeat protein; PDBTitle: crystal structure of wild-type plk-1 kinase domain in2 complex with a selective darpin
58 | c2xenA_ |
| not modelled | 99.7 | 24 | PDB header:de novo protein Chain: A: PDB Molecule:ni1c mut4; PDBTitle: structural determinants for improved thermal stability of2 designed ankyrin repeat proteins with a redesigned c-3 capping module.
59 | c2l6bA_ |
| not modelled | 99.6 | 20 | PDB header:de novo protein Chain: A: PDB Molecule:nr1c; PDBTitle: nrc consensus ankyrin repeat protein solution structure
60 | c1n0qB_ |
| not modelled | 99.6 | 25 | PDB header:structural protein Chain: B: PDB Molecule:3 ankyrin repeats; PDBTitle: 3ank: a designed ankyrin repeat protein with three identical consensus2 repeats
61 | c1n0rA_ |
| not modelled | 99.5 | 21 | PDB header:structural protein Chain: A: PDB Molecule:4 ankyrin repeats; PDBTitle: 4ank: a designed ankyrin repeat protein with four identical2 consensus repeats
62 | c2xumS_ |
| not modelled | 63.6 | 22 | PDB header:oxidoreductase/peptide Chain: S: PDB Molecule:asp-substrate peptide 2; PDBTitle: factor inhibiting hif (fih) q239h mutant in complex with zn(ii), nog2 and asp-substrate peptide (20-mer)
63 | c3zrhA_ |
| not modelled | 49.4 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase zranb1; PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd)
64 | d1d1da1 |
| not modelled | 41.0 | 35 | Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain
65 | d2qamc2 |
| not modelled | 39.2 | 57 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
66 | c1rl2A_ |
| not modelled | 35.7 | 33 | PDB header:ribosomal protein Chain: A: PDB Molecule:protein (ribosomal protein l2); PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus
67 | d1rl2a2 |
| not modelled | 34.5 | 57 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
68 | d1ukfa_ |
| not modelled | 31.3 | 26 | Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Avirulence protein Avrpph3
69 | c2y0iS_ |
| not modelled | 28.1 | 8 | PDB header:oxidoreductase/peptide Chain: S: PDB Molecule:tankyrase-2; PDBTitle: factor inhibiting hif-1 alpha in complex with tankyrase-2 (tnks2)2 fragment peptide (21-mer)
70 | d1nepa_ |
| not modelled | 27.2 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:ML domain
71 | c2zkrn_ |
| not modelled | 26.9 | 13 | PDB header:ribosomal protein/rna Chain: N: PDB Molecule:rna expansion segment es27; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
72 | c3cixA_ |
| not modelled | 26.6 | 17 | PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate
73 | d1vqoa2 |
| not modelled | 26.5 | 25 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
74 | c2ftcB_ |
| not modelled | 25.2 | 43 | PDB header:ribosome Chain: B: PDB Molecule:mitochondrial ribosomal protein l2; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
75 | d2zjra2 |
| not modelled | 24.6 | 57 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
76 | c3go5A_ |
| not modelled | 22.5 | 15 | PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
77 | d1hnga1 |
| not modelled | 19.8 | 38 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
78 | c1af7A_ |
| not modelled | 17.9 | 29 | PDB header:methyltransferase Chain: A: PDB Molecule:chemotaxis receptor methyltransferase cher; PDBTitle: cher from salmonella typhimurium
79 | d2j01d2 |
| not modelled | 15.2 | 57 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
80 | d1bvua1 |
| not modelled | 14.9 | 14 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
81 | c1kqsA_ |
| not modelled | 14.4 | 25 | PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis
82 | d7reqb1 |
| not modelled | 13.2 | 11 | Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
83 | d2fd5a1 |
| not modelled | 12.2 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain
84 | d1wo8a1 |
| not modelled | 12.1 | 26 | Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA
85 | d2gsta2 |
| not modelled | 12.0 | 16 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain
86 | d2c4ja2 |
| not modelled | 11.9 | 11 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain
87 | c2k0mA_ |
| not modelled | 11.9 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43
88 | c2zkra_ |
| not modelled | 11.2 | 25 | PDB header:ribosomal protein/rna Chain: A: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
89 | d2vy4a1 |
| not modelled | 11.1 | 40 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:CHHC finger
90 | c2b66D_ |
| not modelled | 11.0 | 57 | PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
91 | c3rrrB_ |
| not modelled | 9.4 | 38 | PDB header:viral protein Chain: B: PDB Molecule:fusion glycoprotein f0; PDBTitle: structure of the rsv f protein in the post-fusion conformation
92 | d1czda1 |
| not modelled | 9.3 | 31 | Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor
93 | c1d0rA_ |
| not modelled | 9.1 | 50 | PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water
94 | c1n7qA_ |
| not modelled | 8.9 | 16 | PDB header:lyase Chain: A: PDB Molecule:hyaluronidase; PDBTitle: streptococcus pneumoniae hyaluronate lyase w291a/w292a double mutant2 complex with hyaluronan hexasacchride
95 | c3ac0B_ |
| not modelled | 8.2 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose
96 | d1fhea2 |
| not modelled | 8.2 | 5 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain
97 | d1eg3a1 |
| not modelled | 8.1 | 48 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
98 | c3rkiB_ |
| not modelled | 8.1 | 38 | PDB header:viral protein Chain: B: PDB Molecule:fusion glycoprotein f0; PDBTitle: structural basis for immunization with post-fusion rsv f to elicit2 high neutralizing antibody titers
99 | d1v5ma_ |
| not modelled | 7.9 | 25 | Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain)

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0