BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (379 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 T... 765 0.0 UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 ... 455 e-126 UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 ... 429 e-119 UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 ... 413 e-114 UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 ... 399 e-109 UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytoch... 371 e-101 UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subun... 340 5e-92 UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 337 5e-91 UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Ta... 312 1e-83 UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=... 289 1e-76 UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 T... 288 3e-76 UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 ... 279 1e-73 UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Act... 249 8e-65 UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 244 3e-63 UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 239 1e-61 UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 236 1e-60 UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 ... 228 2e-58 UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 223 1e-56 UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2... 223 1e-56 UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireduce... 219 9e-56 UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 217 7e-55 UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 ... 216 1e-54 UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Ta... 209 1e-52 UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 209 1e-52 UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 209 2e-52 UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 208 2e-52 UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II... 203 8e-51 UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 202 2e-50 UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 200 6e-50 UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 198 3e-49 UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 197 4e-49 UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 197 5e-49 UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 196 1e-48 UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 195 3e-48 UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 191 4e-47 UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachl... 188 2e-46 UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 183 9e-45 UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax... 183 1e-44 UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfo... 183 1e-44 UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 T... 182 1e-44 UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 182 2e-44 UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax... 179 1e-43 UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 179 2e-43 UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 176 2e-42 UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms Rep... 175 2e-42 UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 175 3e-42 UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex ... 172 3e-41 UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 171 5e-41 UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase... 168 3e-40 UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=5... 167 4e-40 UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 ... 167 9e-40 UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 165 3e-39 UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 163 9e-39 UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol ox... 161 3e-38 UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 161 4e-38 UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 159 1e-37 UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sla... 158 3e-37 UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 ... 157 7e-37 UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Bra... 154 5e-36 UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 153 1e-35 UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 153 1e-35 UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 150 7e-35 UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamyd... 149 2e-34 UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 148 3e-34 UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptospo... 148 3e-34 UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitiv... 139 1e-31 UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 ... 138 3e-31 UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 136 1e-30 UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 ... 135 3e-30 UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyani... 134 7e-30 UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 132 2e-29 UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (Cyd... 128 4e-28 UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitiv... 128 4e-28 UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 127 5e-28 UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 127 7e-28 UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 ... 127 7e-28 UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 ... 125 2e-27 UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 125 3e-27 UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 T... 124 6e-27 UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 123 9e-27 UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomon... 122 3e-26 UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit I... 121 4e-26 UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 120 7e-26 UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 118 3e-25 UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of sub... 118 5e-25 UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobac... 117 1e-24 UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 117 1e-24 UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 116 1e-24 UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 115 4e-24 UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 115 4e-24 UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 113 1e-23 UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 T... 112 2e-23 UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 112 3e-23 UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 111 5e-23 UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 110 8e-23 UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=1... 110 8e-23 UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 109 1e-22 UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 109 2e-22 UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 108 2e-22 UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 106 2e-21 UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquino... 105 3e-21 UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 103 8e-21 UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit ... 103 1e-20 UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 102 2e-20 UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 100 1e-19 UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 ... 97 7e-19 UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 96 2e-18 UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 95 5e-18 UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronoba... 94 6e-18 UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 T... 94 8e-18 UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidas... 91 9e-17 UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautili... 87 7e-16 UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitrati... 87 7e-16 UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteoba... 87 9e-16 UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 85 4e-15 UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 84 8e-15 UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 83 2e-14 UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 83 2e-14 UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase sub... 82 2e-14 UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 81 7e-14 UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 81 7e-14 UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 81 7e-14 UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Ta... 80 9e-14 UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 80 1e-13 UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 80 2e-13 UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like... 79 4e-13 UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 77 1e-12 UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 T... 76 2e-12 UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 75 3e-12 UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 75 3e-12 UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit ... 74 1e-11 UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 72 5e-11 UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 70 1e-10 UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit ... 67 8e-10 UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 65 6e-09 UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 64 8e-09 UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,... 64 9e-09 UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptospora... 63 2e-08 UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 59 4e-07 UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 57 1e-06 UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 54 1e-05 UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 T... 52 4e-05 UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 52 5e-05 UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Strep... 50 1e-04 UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 T... 50 1e-04 UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 49 3e-04 UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 48 5e-04 UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit... 47 0.001 UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 ... 47 0.002 UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus... 46 0.002 UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Ta... 44 0.007 UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 42 0.046 UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C... 41 0.084 >UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 Tax=Bacteria RepID=CYDB_ECO57 Length = 379 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/379 (100%), Positives = 379/379 (100%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 361 KMFGRITKEDIERNTHSLY 379 KMFGRITKEDIERNTHSLY Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 Tax=Proteobacteria RepID=A6VVF5_MARMS Length = 378 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/378 (59%), Positives = 286/378 (75%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +DYE+L+ IWW+L+GVLLIGF+VTDGFDMGVG L + +G ND+ERR+MINSIAPHWDGNQ Sbjct: 1 MDYELLKVIWWVLIGVLLIGFSVTDGFDMGVGSLLKIIGGNDSERRVMINSIAPHWDGNQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VW ITAGGALFAAWP+VYA +FSGFY AM+LVLA+LFFRP+GFDYRSK+E T+WRN WDW Sbjct: 61 VWFITAGGALFAAWPVVYATSFSGFYFAMMLVLAALFFRPIGFDYRSKLENTKWRNGWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI GS VPP++ GVAFGNLLQGVPF D+YLR+ YTG+FF LLNPF +L G+VS+ M++ Sbjct: 121 GITFGSAVPPIIFGVAFGNLLQGVPFEFDQYLRVTYTGSFFALLNPFAILCGLVSLLMLM 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 TQG +LQM+T L + + + V F +AGVW+ YGIDGYV+ S++D Sbjct: 181 TQGGAWLQMKTDDALLEKASRITAITGALAAVLFIIAGVWLAYGIDGYVLTSSIDGNKVM 240 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL K + GAWL N++ P L P +G+ L +TA M K A +F+ SSL +A Sbjct: 241 TPLMKTAEVQPGAWLANYDKVPALMLAPIIGIAGMLFAAITAVMRKGALSFLSSSLGIAG 300 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 II+TAG +MFPF+MPSS+ + SLTMWDATSS+ T+ +M VA + VPI+L+YT W Y+ Sbjct: 301 IIVTAGGSMFPFLMPSSSYPSMSLTMWDATSSENTMMIMFVVACIFVPIVLIYTLWNYFV 360 Query: 362 MFGRITKEDIERNTHSLY 379 M+GR+TK+ IE N HSLY Sbjct: 361 MYGRLTKKHIEENNHSLY 378 >UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 Tax=Bacteria RepID=Q2J1M0_RHOP2 Length = 383 Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/383 (57%), Positives = 275/383 (71%), Gaps = 4/383 (1%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+DYE L+F+WW+ VG+LL+GFA+TDG DMGVG L F+ R D ERRI INS+ PHWDGN Sbjct: 1 MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVW ITAGGA+FAAWP VYAAAFSGFY+AM+LVL +LFFRPVGFDYRSKIE WRN WD Sbjct: 61 QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN----FFQLLNPFGLLAGVVS 176 WG+F G +P L+ GVAFGNLLQGVPF +DE LR +Y G+ LLNPF LLAGV+S Sbjct: 121 WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS 180 Query: 177 VGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMD 236 + M+ G +LQ+R G + R R + + + V FALAGVW+ G+DGY + Sbjct: 181 LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA 240 Query: 237 HYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSS 296 H AASNPL KEVVR GAWL + P+ +PALG+V PLLT+L A + + AFV S+ Sbjct: 241 HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA 300 Query: 297 LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 + II TAG++MFPF+MPSS +SLT+WDA SS+LTL VM W V+ +PI+L YT Sbjct: 301 FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV 360 Query: 357 WCYWKMFGRITKEDIERNTHSLY 379 WCY M+GR+T ++IE HS Y Sbjct: 361 WCYANMWGRVTADEIEARAHSAY 383 >UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 Tax=Gammaproteobacteria RepID=A5F0M8_VIBC3 Length = 378 Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/379 (52%), Positives = 277/379 (73%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M +Y+ LR IWW L+G LLIGF +TDGFDMGVG L LG++++++R+MINSIAPHWDGN Sbjct: 1 MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLITAGGALFAAWP+VYA +FS Y+AM L+L +L+ RP+ +YR+KI+ WR + D Sbjct: 61 QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I + +PPL+ GVAFGNL+QG+PF+++ L + Y G+F L+ PF +L+G + V M Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + QG+ +L ++T LH + R TAQ++ L F + G ++++G++GY++ S++D+ A Sbjct: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPLNK V ++AGAWL NF P +W P G+++ + L+A+ A FV +S+T A Sbjct: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 CIILTAG AMFPF+MPSS + SLT+WDATSS+ TLN+MT VA V++PIIL YTA+ Y Sbjct: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359 Query: 361 KMFGRITKEDIERNTHSLY 379 MFGR+ K+ IERN HSLY Sbjct: 360 TMFGRLDKQYIERNHHSLY 378 >UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 Tax=Salmonella enterica subsp. enterica RepID=B4SUI6_SALNS Length = 378 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/379 (55%), Positives = 272/379 (71%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+DYE LRFIWWLL+GV+L+ F VTDGFDMGVG L + RND ERR++INS+ HW+GN Sbjct: 1 MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI AGGALFAAWP VYAAAFSGFYVAMILVL +LFFRP+ FDYR KI RWR +WD Sbjct: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 G+ IGS VPP+V G+AFGNL GVPF L + Y G F+QLL+PF LL G++S+ ++ Sbjct: 121 TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 I QG +LQ++T G + R + + +AL+ ++CF LAG W+ G+DG+V+ T D Sbjct: 181 IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLL-TQDANGP 239 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPL K V GAW+ +F +P+L IP LG++LP+L + F+F+SLT A Sbjct: 240 SNPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQA 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 C+I TAGI +FPFVMPSS +SLT+WD+TSSQ+TL +M + ++ +PI+LLYT W Y+ Sbjct: 300 CVIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYY 359 Query: 361 KMFGRITKEDIERNTHSLY 379 KM GRI E + RN H LY Sbjct: 360 KMLGRINLETLRRNDHELY 378 >UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) n=37 Tax=Bacteria RepID=A4G4W0_HERAR Length = 384 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/379 (47%), Positives = 255/379 (67%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +IDY++LR WW L+GVLL+ FAVTDGFD+G G+L F+ RND ERR++INS+ P W+GN Sbjct: 6 LIDYDILRLTWWALIGVLLLAFAVTDGFDLGTGILLPFVARNDIERRVVINSVGPVWEGN 65 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FAAWP +YA AFSGFY+AM +L +L RPV F +RSK E+ WR WD Sbjct: 66 QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILVALILRPVAFKFRSKREDPGWRARWD 125 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +F FVP L+ GVA GN+LQGVPF +D + ++Y G+FF LLNPF LL G+VSV M+ Sbjct: 126 GVLFFSGFVPSLIFGVALGNVLQGVPFRLDLDMHIFYEGSFFGLLNPFALLCGLVSVAML 185 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+ +LQ++T G + R R +AAL T++ + AG+ + +DGY + S +D Sbjct: 186 AMHGSAWLQLKTDGVVAERARRYGSMAALATVLLYGCAGLLLWKYVDGYRISSMIDPVGP 245 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPL K V AGAW VN+ P A P LG++ + L RM + + + S+++++ Sbjct: 246 SNPLLKTVEGHAGAWFVNYTAQPWTMAAPVLGLLGAIGAWLGLRMRREIFTLLCSAVSIS 305 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 I+L+ G +MFPF++PSS ASLT+WD++SS LTL +M V+V+ +PII+ YT W Y Sbjct: 306 GIVLSVGASMFPFILPSSIHPAASLTVWDSSSSHLTLFIMLVVSVIFIPIIVAYTTWVYH 365 Query: 361 KMFGRITKEDIERNTHSLY 379 ++G++ ++ I T Y Sbjct: 366 VLWGKVDEKAIRDETGHAY 384 >UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subunit II n=6 Tax=Alphaproteobacteria RepID=C5AXY0_METEA Length = 384 Score = 340 bits (872), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 189/378 (50%), Positives = 245/378 (64%), Gaps = 1/378 (0%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 DYE LR IWW+L+GVLLIGFAVTDGFD+GVG L F+GR D ERR+ I++++ W+GNQV Sbjct: 7 DYESLRLIWWVLLGVLLIGFAVTDGFDLGVGALLPFVGRTDVERRVAIHTVSATWEGNQV 66 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+ GGA+FAAWP +YA +FSGFY+AM LVL +L RPV F YRSK WR+ WDW Sbjct: 67 WLVLGGGAIFAAWPALYALSFSGFYLAMFLVLFALILRPVAFKYRSKRASAAWRSRWDWA 126 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 +F+G VP L+ GVA GN+LQGVPF+ LR Y G+ LLNP LL G+VS+ M++ Sbjct: 127 LFVGGAVPALIFGVAVGNVLQGVPFHFTGDLRPIYGGSLLGLLNPLALLCGLVSLVMLVA 186 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG-IDGYVVKSTMDHYAAS 241 GA +L + G + R RA AAL T F L G+ + G GY V S + S Sbjct: 187 HGAAWLAFKAEGAVAERARAIGLKAALATAALFTLGGLLIWAGAFGGYRVVSPLPGDGPS 246 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 NPL K VV +AGAWL NF P L +P LG+V PLL L R F+ SSL +AC Sbjct: 247 NPLTKAVVADAGAWLANFRAHPALALVPLLGIVGPLLAALGFRARHEGLTFLASSLGIAC 306 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 II T G++MFP ++PS+T +LT++DA+SS+ TL M V+ +PIIL YTAW Y Sbjct: 307 IIATVGLSMFPVILPSNTHPGHALTVFDASSSRATLRNMLIATVIFLPIILAYTAWVYRV 366 Query: 362 MFGRITKEDIERNTHSLY 379 ++G+++ DI + Y Sbjct: 367 LWGKVSDRDITAPGSAAY 384 >UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Methylococcus capsulatus RepID=Q609X1_METCA Length = 378 Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 176/379 (46%), Positives = 244/379 (64%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M DYE +R IWW++ G + GF +T GFD G+G L F+GRND ERR++IN+I P WDGN Sbjct: 1 MFDYETMRVIWWVITGAVATGFVLTVGFDFGIGALLPFIGRNDVERRVVINTIGPTWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FA WP VYA FSG Y+AM+LVL +LFFRPVGFDYRSK+E +WR WD Sbjct: 61 QVWLILLGGAIFAVWPAVYATLFSGLYIAMLLVLYTLFFRPVGFDYRSKLESPQWRTAWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 WG+FIG VPP+++GV GNLL G+PF++D LR +Y G+F+ LL PF LL GV+ + Sbjct: 121 WGLFIGGAVPPVLMGVLVGNLLVGLPFHLDGSLRTFYDGSFWGLLTPFPLLCGVIGLLAC 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + GA YL RT + R R A + +V ++ LA WV+ GI + + A Sbjct: 181 VFHGAVYLGCRTERPIEQRARRVAAIGGVVLVLLMILAAAWVILGIPRPEILTMAGPNAP 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNP+ K V +G+WL NF P L+ PAL V+ A ++A AF S++ + Sbjct: 241 SNPMAKT-VDFSGSWLGNFLAHPRLFVAPALAVLGVSAAAALAGSGRSAAAFAASAVGMG 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++ T G +FPF++ S+T +SLT+WDA++S L L + ++ +PI+LLYT W Y Sbjct: 300 GLLWTVGFGLFPFMLISTTDPRSSLTIWDASASHLNLQWSLAITLMFLPIVLLYTRWAYR 359 Query: 361 KMFGRITKEDIERNTHSLY 379 ++G++T DI + H+LY Sbjct: 360 VIWGKVTVADIAKGDHTLY 378 >UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Tax=Coxiella burnetii RepID=A9KD50_COXBN Length = 381 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 162/379 (42%), Positives = 238/379 (62%), Gaps = 5/379 (1%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +++Y L+ +WW+++G +L+ +A T GFD GV M+ FL RN+T+RRI++N+ AP WDGN Sbjct: 3 LLNYTFLKVVWWMIIGSILVVYASTAGFDSGVTMIMPFL-RNETQRRILLNTSAPVWDGN 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 W++ AGG LF WP+VY+ AFSG Y+ ++ ++ SLF RP G+DYR K+ WR WD Sbjct: 62 LTWILFAGGGLFVVWPVVYSTAFSGLYLILLFIMWSLFLRPPGYDYRGKLPSPIWRRSWD 121 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +FI S VP G+AFGN L G PF+ D R YYTG++F+L N FG+L+G SV M+ Sbjct: 122 VALFISSIVPVFFFGLAFGNCLLGFPFHFDSLFRDYYTGSWFELFNGFGILSGTASVLMV 181 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + G+ Y+Q RT G+L R +A ++ + F++AG+ V+Y I GY + S A Sbjct: 182 LMHGSAYIQRRTEGDLRELGRRIHYIATVLLTIAFSVAGLLVLYRIKGYTLISYPKD-AT 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 PLN V+R GAWL ++N+ P + P + +LT+L+ + F S+L + Sbjct: 241 IYPLNNVVIRSVGAWLNSYNHHPWKYFGPIFAYLGIILTLLSNFFRWYTFCFWSSALAIM 300 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY- 359 +I T G +FPF+MPSST + SLT+W+ATSSQ LNVM +V V+L +IL Y + Y Sbjct: 301 GLIGTIGFTLFPFIMPSSTAPDQSLTVWNATSSQYGLNVMLYVGVILFIVILGYKLYAYH 360 Query: 360 --WKMFGRITKEDIERNTH 376 W IT++D+E + H Sbjct: 361 TIWSKQKTITEKDLETDKH 379 >UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=B0U137_FRAP2 Length = 398 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/396 (41%), Positives = 233/396 (58%), Gaps = 22/396 (5%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 +VL+ I WL+VGVL+ A T GFD GVG+L +F+G++D E+R +IN++ P WDG+QVW Sbjct: 4 DVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQVWF 63 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 ITAGGA+FA WP VYA +FSG Y+A++LVL LF RP F+YR KI+ W+N WDW + Sbjct: 64 ITAGGAIFAIWPQVYATSFSGLYIAILLVLWGLFLRPPAFEYRKKIDNPTWKNFWDWMLL 123 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYY----TGNF-------FQLLNPFGLLAG 173 +GS +P +V+GVA GNL G P + D+ RL Y G + LL PF LL G Sbjct: 124 LGSVIPIVVMGVAIGNLYLGFPISYDDTARLIYGTVTDGQYQSMWVTLIHLLTPFALLFG 183 Query: 174 VVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKS 233 + ++ M + G+ Y ++RT G L R R V A + LV F +A +W+ I GY + Sbjct: 184 IFALNMSLMHGSAYAKLRTDGVLRDRFRKITNVTATIYLVLFVVAAIWIAL-IPGYQYST 242 Query: 234 ----TMDHYAASNPLNKEVVREAGAWLVNFNNTPILWA--IPALGVVLPLLTILTARMDK 287 T A +P + V+ +W NF +W P L V LL I DK Sbjct: 243 GASCTYASEALQHPFSAGVITSDHSWYYNFTQAKTIWMWFAPILAFVGALLVIKFNNKDK 302 Query: 288 AAWAFVFSSLTLACIILTAGIAMFPFVMPSST-MMNASLTMWDATSSQLTLNVMTWVAVV 346 AF+ S +L +LT G A+FPF+M S+ SLT+++A+SSQ +L + AV+ Sbjct: 303 DGAAFIASMASLLGAVLTVGFALFPFIMVSNVGNFQYSLTVFNASSSQTSLIGILCAAVI 362 Query: 347 LVPIILLYTAWCYWKMFG---RITKEDIERNTHSLY 379 ++PII YT + Y KM+ R++ E+++ N+H LY Sbjct: 363 ILPIIFSYTFFVYKKMWANGRRVSAEEVKANSHELY 398 >UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 Tax=Aeromonas RepID=A0KIS6_AERHH Length = 375 Score = 288 bits (736), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 3/378 (0%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +DYE L+ IWW LV +L+GF V DGFD+GV ML + +ND ERR+++NS+ P W+GNQ Sbjct: 1 MDYETLKLIWWGLVLFMLVGFVVMDGFDLGVAMLLPVVAKNDEERRVLLNSVGPVWEGNQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI GALFAAWP+VYAAAFS YV + +L LF RPVGFDYRSK+ + WR WD Sbjct: 61 VWLIAGAGALFAAWPLVYAAAFSALYVPFMFLLFGLFLRPVGFDYRSKLADPVWRRWWDR 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + +G +P LV G G LLQG+PF D LR++Y F P L ++ +++ Sbjct: 121 ALVVGGLLPTLVFGATLGFLLQGLPFRFDAALRIHYGA--FDFHWPLLLTCMGTALALLL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA++LQ +T GE+ R + + FAL GVW + + GY V D A Sbjct: 179 LHGASFLQCKTQGEIARRCARQSLWLGPLASGLFALGGVW-LSQMAGYRVLEIGDINGAL 237 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL KEV WL NF P LW +PALG+VLP+++ L + + A + S A Sbjct: 238 TPLMKEVGVAQQGWLANFVAHPWLWCVPALGLVLPMVSSLASARELPRTALLASGGACAS 297 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++LT IA+FPFV+PSS ++SLT+WD+TSS+ TL +M + VL+PI + YT W Y Sbjct: 298 MMLTIAIALFPFVLPSSLDPSSSLTLWDSTSSERTLFIMLGIVGVLMPINIGYTLWVYRV 357 Query: 362 MFGRITKEDIERNTHSLY 379 + G+++ + I ++ HSLY Sbjct: 358 VRGKMSAQQIRQHGHSLY 375 >UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 Tax=Proteobacteria RepID=A5FZ08_ACICJ Length = 379 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 224/376 (59%), Gaps = 3/376 (0%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 Y L+ IW +L+GVLL G + G DMGVG L RF+GR D ERR + I PHWDGNQVW Sbjct: 4 YIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGNQVW 63 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 I GGA+FAA+P +YA +FS FYV MIL+L S+ RPV F+YRSK++ RWR WDW Sbjct: 64 FILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWDWAF 123 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNF-FQLLNPFGLLAGVVSVGMIIT 182 I +P ++ G AFGN+LQGV F+ + Y G+F + LLNPF ++ GV+S+ + + Sbjct: 124 LISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLALAVH 183 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 QG L +R G + R R A A L+ FA+ GVWV + I G+ + ++ + Sbjct: 184 QGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRF-IKGFAYTAPVNPAMPAT 242 Query: 243 PL-NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL V AGAW+ NF+ P+LW +PA+G++ + L K + +L Sbjct: 243 PLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAWIG 302 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 I T G AMFPF+MPS+T SLT+W+A+ S L M A+V VPIIL YTAW + Sbjct: 303 TIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAFRV 362 Query: 362 MFGRITKEDIERNTHS 377 M G++ E + N HS Sbjct: 363 MRGKVKTESVIANDHS 378 >UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Actinomycetales RepID=D1BDL9_SANKS Length = 368 Score = 249 bits (637), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 216/373 (57%), Gaps = 40/373 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +D E L+ +W++L+ VL G+ V +GFD GVGML LGR + +RR+MIN+I P WDGN+ Sbjct: 1 MDLETLQVLWFVLIAVLWTGYLVLEGFDFGVGMLMPILGRKEKDRRVMINTIGPVWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA+ FSGFY+ + ++L L R +GF+YRSKI + WR WD Sbjct: 61 VWLLTAGGATFAAFPEWYASLFSGFYIPLFIILICLIVRGMGFEYRSKINDATWRRRWDA 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + IGS++P ++ GVAF NL++GV + + + TG FF LL+PF LL GVV++ + + Sbjct: 121 SVIIGSWLPSILWGVAFANLVRGVEMDANHTM----TGGFFSLLSPFALLGGVVTMLLFL 176 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 T GA ++ ++T G++ +R R ++A + ++ AG W ++ Y Sbjct: 177 THGAVFVALKTEGDIRVRAR---RLAGMFSVASVVAAGGWALWAQLAY------------ 221 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT-LA 300 T W A+ + +++ + WAF +S+L LA Sbjct: 222 -------------------GTTWTWGAVAVAAAALVAVVVSNARAREGWAFFWSALAILA 262 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++L G +M+P VMP+S SL + +A+S++ TL VMTWVA+ L P++LLY +W YW Sbjct: 263 AVVLIFG-SMYPDVMPASNDPANSLNIRNASSTEYTLTVMTWVALFLTPLVLLYQSWTYW 321 Query: 361 KMFGRITKEDIER 373 RI I Sbjct: 322 VFRKRIGTHHIPE 334 >UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Bacteria RepID=A1AN69_PELPD Length = 351 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 216/377 (57%), Gaps = 28/377 (7%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++ + IW++L GVL + +TDGF +G G ++ FL ++DTERR++IN++ P WDGN+ Sbjct: 1 MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA FS Y A++L+L +L R V F++R KI+ W+ WD Sbjct: 61 VWLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDR 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLY-YTGNFFQLLNPFGLLAGVVSVGMI 180 I I SF+P L+ GVAFGN+ +G+P D ++ Y G+ LLNP+GLL G++ V + Sbjct: 121 AITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGSLLTLLNPYGLLTGILFVMLF 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+ Y ++T G+L R AA+ + F L V V++ Y D+Y Sbjct: 181 AVHGSLYAAIKTTGDLSQRA------AAMANRLWFPLLAVAVLFLGATYPATRLYDNYLK 234 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 S P+L IP + V LL L A D+ AF+FS LT+ Sbjct: 235 S---------------------PLLLIIPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIV 273 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + T +FP ++PSS ++LT+++++SS LTL +MT VA++ VPI++ Y AW Y Sbjct: 274 FVCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYR 333 Query: 361 KMFGRITKEDIERNTHS 377 R+T ED+ ++ + Sbjct: 334 IFRARVTSEDVLESSEA 350 >UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXC1_CHLT3 Length = 359 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 208/367 (56%), Gaps = 22/367 (5%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+LL+GVLLIG+A+ DGFD+GVG L L ++D ERR+++NSI P WDGN+VWLIT Sbjct: 3 LNTIWYLLIGVLLIGYAILDGFDLGVGAL-HLLAKDDNERRLLLNSIGPVWDGNEVWLIT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P YA AFSGFY+A +L+L SL R V ++RSK E WRN WD+ IG Sbjct: 62 GGGALFAAFPHAYATAFSGFYLAFMLLLVSLISRAVSIEFRSKRESQAWRNFWDYSFSIG 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + ++ GVA GN++ G+ D + Y G FF LL P+ +LAGV ++ + GA Sbjct: 122 SVLSAILFGVAIGNMVAGIKIGSD----MEYAGTFFDLLTPYTVLAGVFNLALFTMHGAI 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMY----GIDGYVVKSTMDHYAASN 242 YL ++T G+L R + A A V L + + +Y I + +++ Sbjct: 178 YLFVKTEGDLQERVKGWAMRAFFVFLALYVIVTAATLYMKPEMIANFSFGKIQPATGSAH 237 Query: 243 PL--NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 L + +VV AW++ N + IP T K AF+ S+ T+A Sbjct: 238 ELIQSNQVVISVFAWIIVILNGLAIANIPR-----------TLVHGKELQAFLSSACTIA 286 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++ + +FP ++ SS SLT+++A SS+ TL M +A++ +P++L YT YW Sbjct: 287 ALVFLFAVGVFPNMITSSLDPAYSLTIYNAASSEKTLFTMLIMALIGMPLVLSYTISIYW 346 Query: 361 KMFGRIT 367 G+ T Sbjct: 347 VFRGKTT 353 >UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DWD8_SULAA Length = 344 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 211/366 (57%), Gaps = 37/366 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+LL GV L+G+A+TDGFD+G G+LT F + D RRI+ N+IAP WDGN+VWLI Sbjct: 9 LEGIWFLLAGVFLVGYALTDGFDLGTGILTIFT-KKDENRRILYNAIAPVWDGNEVWLIA 67 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFAA+P+VYAA+FSGFY+A++LVL +L R V F+YR+K E WRN WDW +IG Sbjct: 68 GGGMLFAAFPVVYAASFSGFYLAILLVLWALIGRAVAFEYRNKKETPLWRNTWDWIYWIG 127 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 +FVP L+ GVA GN + GVP + + Y G+FF LL P LL G V+ M + G+ Sbjct: 128 NFVPALLFGVAVGNAVIGVPIDQEG----IYRGDFFTLLRPIPLLMGFVAAFMFLMHGSA 183 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL +T GE+ + A + G GYV+ + + Sbjct: 184 YLLRKTEGEVFELAKKAAYI------------------GFFGYVITLAITDFL------- 218 Query: 247 EVVREAGAWLVNFNNTPILWAIPA---LGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 +V A N+ P+ W PA +G++L +++ DK + S+LT + Sbjct: 219 -MVIVAPFLYDNYFKYPLFWIAPAFIIIGLILYFKNLVSNNYDKVIYG---STLTTVGTV 274 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 LT +A +P +M SS +LT+W++ SS +TL VM V ++++PI++ YT + Y Sbjct: 275 LTIALASYPVLMRSSLNPEYNLTIWNSASSHITLTVMLVVTILIMPIVIFYTTYVYRVFK 334 Query: 364 GRITKE 369 G+++ E Sbjct: 335 GKVSSE 340 >UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TEW5_HELMI Length = 345 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 212/372 (56%), Gaps = 32/372 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ W++LVGVLL+G+A+ DGFD+GVG L L ++ ERR MI SI P+WD NQVWL+T Sbjct: 4 LQITWFVLVGVLLLGYALLDGFDLGVGSL-YLLTKDPDERRRMIYSIGPYWDSNQVWLLT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGA+FAA+PMVYA FSGFY+A++LVL +L FR V +++ +++ WR WD G +G Sbjct: 63 GGGAIFAAFPMVYATVFSGFYLALMLVLFALIFRAVSIEFQHQLDSPGWRKWWDLGFSLG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P ++ GVA GN+L+G+P + + Y G+F LLNP+ L+ G+VS+ + GA Sbjct: 123 SLLPSILYGVAVGNILRGIPLDANG----GYLGDFLGLLNPYSLVMGLVSLSLFAMHGAA 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ ++ G L ++ R A+ A L L F + W G Sbjct: 179 FIISQSDGALQVKARRWARAAWLTLLPLFLIGTAWSYLGTP------------------- 219 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N+ + P+LW P + ++ + A S+LT+ ++ T Sbjct: 220 -------RLFSNYFDVPLLWVFPLIALLGLAAFPAALKGGNAYGPLGASALTIFGLLTTM 272 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 ++FP+++P+S + SLT+++A+SS+ TL +M +A++ +PI+L YTA+ Y + F R Sbjct: 273 AASLFPYIVPASNNLANSLTVFNASSSERTLMIMLILALIGLPIVLTYTAYIY-RTFIRS 331 Query: 367 TKEDIERNTHSL 378 + N S+ Sbjct: 332 ARVMTIGNKQSM 343 >UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM68_AKKM8 Length = 345 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 208/371 (56%), Gaps = 36/371 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW++LVGVL G+A+ DGFD+G G L F+ + D RR+ +N++ P WDGN+VWLIT Sbjct: 10 LQIIWFILVGVLFSGYAILDGFDLGTGALQLFI-KGDENRRLTLNAVGPVWDGNEVWLIT 68 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P VYA+ FSGFY+A +L+L +L FR V ++RSK WR WD I Sbjct: 69 GGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSIS 128 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L+IGVA GN+ +G+P +D++ +TG F LLNP+ +L G+ +V + G Sbjct: 129 SLLAALLIGVAMGNVTKGIP--LDDHGN--FTGTFLSLLNPYSILLGLTTVALFSMHGGI 184 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL M+T G L + R + ++ V L G + YV H AA+ Sbjct: 185 YLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLL----YV-----PHVAAA----- 230 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 +P ++ I AL V+ + ++ WAFV S T+ C++ Sbjct: 231 ------------LERSPWIYGIAALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALF 278 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 G AMFP ++ S SLT+ + +S++ +L VMT++A++ VP++L Y+A YW G+ Sbjct: 279 GTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGK- 337 Query: 367 TKEDIERNTHS 377 ++ N HS Sbjct: 338 ----VQLNEHS 344 >UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2 Tax=Bacillaceae RepID=B7GK13_ANOFW Length = 360 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 198/380 (52%), Gaps = 41/380 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +E++ IW+ L G++ + V DG+ +G GML FL RN ER + ++ P W GN+ Sbjct: 19 MSHEMVAIIWFGLWGLIWTIYFVLDGYTLGTGMLFPFLARNRQERNQLQEAVGPFWGGNE 78 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLITAGGA FAA+P VYA FS Y M+L+L +LFFR G ++ K + W+ W W Sbjct: 79 VWLITAGGATFAAFPAVYADLFSFLYTPMMLILFALFFRAAGLEFMHKDDAPLWQKSWKW 138 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 I SF L+ GVAF NL G+ Y G FF LL+P+GLL G++ + + I Sbjct: 139 AFTISSFALALLFGVAFANLFYGLKIGPSG-----YEGTFFSLLHPYGLLGGLLFISLFI 193 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA ++ ++ VGE+ R A A+ AA++ V +L V A S Sbjct: 194 VSGALWVMLKAVGEVAERAYAVARPAAIIATVILSLFFV------------------ATS 235 Query: 242 N--PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 N PL NF PILW +PAL V LL +L + AF LT+ Sbjct: 236 NRTPL-----------FHNFTKAPILWVVPALTFVCALLMLLFVWQKRIGLAFTNICLTI 284 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ++ T I MFP ++PS S T+++A S+L L +M VA+V+VPI++ Y W Y Sbjct: 285 FTLMATGFIGMFPNMLPSRINDEYSTTLFEAAGSELNLKIMLGVAIVMVPIVVGYQLWSY 344 Query: 360 WKMFGRITKEDIERNTHSLY 379 ++ KE I + T Y Sbjct: 345 -----KLFKEKITKETAKGY 359 >UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUL7_9BACI Length = 339 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 204/364 (56%), Gaps = 32/364 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW++L+ VL+IG+AV DGFD+G+G L LG+ + E+R +INSI P WDGN+VWL+T Sbjct: 3 LQLIWFILLAVLIIGYAVLDGFDLGIGTLFYQLGKTEEEKRTLINSIGPVWDGNEVWLLT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKI-EETRWRNMWDWGIFI 125 GGALFAA+P VYA FSGFY+AM++VL L FR V +Y K ++ + + I Sbjct: 63 GGGALFAAFPFVYATVFSGFYLAMMVVLFGLIFRAVAVEYYFKCSDDPPMQRLMGKLFMI 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS +P L+ GVA GNL+ G+P + + + YT FF LL+P+ LL GV+ + + QG Sbjct: 123 GSLLPALLFGVAMGNLVIGIPMDQN----MNYTATFFHLLHPYALLIGVIGLVGFLLQGT 178 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 TY ++T L R +++ +V L +W++ + + M Sbjct: 179 TYTILKTENALQRRAIKFSKLFVMV------LGVLWILGTVATVIFAPHM---------- 222 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 NF N P+L+ P L VV +L K F+ SS+ + +LT Sbjct: 223 ----------FTNFTNQPLLFVFPLLTVVAIVLIPFFMYQKKYMAVFLSSSVIITSKLLT 272 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +FP ++ + SLT+++A+SS+ TL VM +A++ +P+++ YTA+ YW G+ Sbjct: 273 LAGGLFPNLVTGADPAT-SLTIYNASSSEYTLTVMLIIALIGMPVVIGYTAFIYWHFRGK 331 Query: 366 ITKE 369 + E Sbjct: 332 ASHE 335 >UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Actinomyces RepID=C0W2T5_9ACTO Length = 378 Score = 217 bits (552), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 205/395 (51%), Gaps = 56/395 (14%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L +W++L+ VL IG+ +GFD GVGML + LGRN+ ERR M+ +I PHWDGN+VWL+ Sbjct: 3 LLSILWFILIAVLWIGYLTLEGFDFGVGMLLKILGRNEQERRAMMKTIGPHWDGNEVWLL 62 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGA FAA+P Y FSG Y+ + L+L L R ++RSKI +WR+ WDW + Sbjct: 63 TAGGATFAAFPEWYGTLFSGAYLVLFLILLCLIVRICAIEWRSKINSQKWRDNWDWAHTV 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEY-------------------LRLYYTGNFFQLLN 166 +++P ++ G AF NL+QG+ V E TG FF LL Sbjct: 123 STWLPSILWGAAFANLVQGMKIEVVEVATGNVIPAENVPSETLLAGASHELTGGFFSLLT 182 Query: 167 PFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGI 226 PF +L G+V+ + +T GA Y ++T G+L R A A+ +A+ + AL VW ++ Sbjct: 183 PFTILGGLVTCSLFLTHGALYTALKTAGDLSARAEAFARKSAIAST---ALTAVWALWAQ 239 Query: 227 DGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMD 286 Y + A AW+ P+L + V + ++L Sbjct: 240 LAYSLN-------------------ALAWI------PLL-----VAAVFLIASLLMTWAG 269 Query: 287 KAAWAFV--FSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVA 344 + WAF F + A + + + AM P VM SS + SLT+ A S +TL +MT A Sbjct: 270 RQGWAFSLHFGGIAFAVVFIFS--AMAPNVMRSSIDDSYSLTIAQAASDDVTLAIMTVAA 327 Query: 345 VVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY 379 ++ VP++L YT W Y R++ E I+ N L+ Sbjct: 328 IIFVPVVLFYTIWGYKVFSKRVSAEKIDPNEGGLH 362 >UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 Tax=Bacteria RepID=D1A2D3_THECD Length = 363 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 201/370 (54%), Gaps = 43/370 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGML-----TRFLGRNDTERRIMINSIAPHWDGNQ 61 L +W+LL+ VL G+ + +GFD GVG+L R +DT+RR+MIN+I P WDGN+ Sbjct: 3 LTTVWFLLIAVLWAGYFLLEGFDFGVGVLMPVLAPRKAAHSDTDRRVMINTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+ AGGA FAA+P YA+ FSGFY+A++L+LA+L R V F+YR K++ RWR WD Sbjct: 63 VWLLVAGGATFAAFPEWYASLFSGFYLALLLILAALIVRGVAFEYRGKVDSDRWRRNWDL 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 IF GS VP L+ GVAF N+LQGVP + +YTG LLNP+ LL G+ ++ + Sbjct: 123 AIFWGSAVPALLWGVAFANILQGVPLDAQH----HYTGTLLTLLNPYALLGGLTTLTVFT 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L ++T G H+R +A V L A V+ G Sbjct: 179 LHGAVFLALKTRG--HVRDQARRAVRYLAAPTVAIAAAFLVITG---------------- 220 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 V F P WA A+ + + A + WAF +++ + Sbjct: 221 ---------------VRF-GVPWTWATTAVAALALAGGVAAALRGRDGWAFTGTAVAIVA 264 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + T ++P V+PS+ SLT+ +A S+ TL VMTWVAV+ PI+L Y AW YW Sbjct: 265 TVATMFGDLWPAVLPSTIDPAYSLTVENAASTPYTLKVMTWVAVIFTPIVLAYQAWTYWV 324 Query: 362 MFGRITKEDI 371 R+T+E I Sbjct: 325 FRKRLTREAI 334 >UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Tax=Bacillales RepID=CYDB_BACSU Length = 338 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/364 (33%), Positives = 189/364 (51%), Gaps = 33/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W++LV VL +GF +GFD GVGM TRFLG N+ ERR++IN+I P WD N+VWL+T Sbjct: 4 LHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLLT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GA+FAA+P YA SG+Y+ ++VL +L R V F++R K++ +W +WDW +F G Sbjct: 64 GAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFFG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +PP V+GV F L +G+P + D + + + +N + +L GV + G Sbjct: 124 SLIPPFVLGVLFTTLFRGMPIDADMNIHAHVS----DYINVYSILGGVTVTLLCFQHGLM 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ +RT+G+L R R AQ V V LA +AA + Sbjct: 180 FITLRTIGDLQNRARKMAQKIMGVVFVA-VLA-------------------FAALSAYQT 219 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 ++ G I + L V+ +L + R K W F + LA + Sbjct: 220 DMFTRRG---------EITIPLAVLIVICFMLAAVFIRKKKDGWTFGMTGAGLALTVGMI 270 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I++FP VM SS LT+ +A+S +L VM+ A+ L+P ++ W Y+ R+ Sbjct: 271 FISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIWSYYVFRKRV 330 Query: 367 TKED 370 + ++ Sbjct: 331 SHKE 334 >UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Aquificales RepID=B4U7P7_HYDS0 Length = 346 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 208/367 (56%), Gaps = 37/367 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ +W+L+ GV LIG+++TDGFD+G F+ + + +R + NS+AP WDGN+VWLI Sbjct: 11 LQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFM-KKEYDRIALYNSVAPVWDGNEVWLIA 69 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFAA+P VYAA+FSGFY+A++LVL +L R V F+YR+K E WR+ +D+ ++G Sbjct: 70 GGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWLG 129 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + +P ++ GVA GN + GVP + D Y G FF LL P L G+VS M GA Sbjct: 130 NVLPAILFGVAVGNAVVGVPIDQDA----VYHGTFFTLLRPVPLAMGLVSFFMFAMHGAA 185 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL ++T G + + A ++ + GYV+ + N Sbjct: 186 YLLLKTEGSVFEMAKKYASISVI------------------GYVISVILT--------NA 219 Query: 247 EVVREAGAWLVNFNNTPILWAIPAL---GVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 ++EA N+ PIL+AIP + GVVL + + + + +K +A S L A + Sbjct: 220 LAMQEAPFLYKNYFTYPILFAIPLMMFVGVVLYVSLLKSGKYEKMVYA---SGLVNAFTV 276 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 L A FP +M SS + SLT+++A+SS LTL VM V V+ +PI++ YT + Y Sbjct: 277 LNVACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFS 336 Query: 364 GRITKED 370 G+++ E Sbjct: 337 GKVSGEK 343 >UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 Length = 338 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 194/368 (52%), Gaps = 41/368 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W++LV VL +GF +GFD GVG+ TRFLG N+ ERR+++N+I P WD N+VWLIT Sbjct: 4 LHDLWFILVSVLFVGFFFLEGFDFGVGISTRFLGHNELERRVLVNTIGPFWDANEVWLIT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GA+FAA+P YA SG+Y+ I++L +L R V F++R ++ +W WDW IF G Sbjct: 64 GTGAIFAAFPNWYATMLSGYYIPFIIILLALMGRGVAFEFRGQVNNLKWVKTWDWVIFFG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +PP V G+ F +L +GVP +D ++ ++ F ++N + +L G + G Sbjct: 124 SLIPPFVFGLIFTSLFRGVP--IDGHMNIH--AGFSDIVNVYSVLGGAAVTLLSFLHGLM 179 Query: 187 YLQMRTVGELHLRTRATAQ----VAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 ++ +RT+G+L R R A+ V LV L FA++ Y D + ++ + Sbjct: 180 FITLRTIGDLQERARKMAKRVIGVIFLVVLAFFAMSA----YDTDMFTRRANI------- 228 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 P+ L V+ +L I+ K WAF + LA Sbjct: 229 ------------------TIPVF----VLIVICNVLAIVFMSKKKDGWAFGMTGAGLALT 266 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 + I++FP VM SS LT+ +A+S +L VMT VA+ L+P ++ W Y+ Sbjct: 267 VAMIFISLFPRVMVSSLKSAYDLTVANASSGDYSLKVMTIVALTLLPFVIGSQIWSYYVF 326 Query: 363 FGRITKED 370 R++ ++ Sbjct: 327 RKRVSHKE 334 >UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U471_9DELT Length = 350 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 196/368 (53%), Gaps = 35/368 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++L GVL + + DGFD+GVG L F+ +N+ E+R M+NS P WDGN+VWLIT Sbjct: 15 LAVIWFVLWGVLWAVYFILDGFDLGVGTLLPFMAKNEDEKRAMLNSTGPFWDGNEVWLIT 74 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG FAA+P YA FSG Y A++L+L +L R V F++RSK+E WR +WD +G Sbjct: 75 AGGVTFAAFPYAYAQMFSGLYTALMLLLFALIVRGVSFEFRSKVESASWRKLWDTCHAVG 134 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF+P L++GVAF N+ +G+P + + + F LLNP+GL GV+ V + + GA Sbjct: 135 SFLPALLLGVAFANIFRGLPLDETGFSQ----AGLFGLLNPYGLAGGVLFVIIFVMHGAL 190 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +R G+L R A + +V L ++ S ++ SN Sbjct: 191 WLCIRATGDLRARAEGLAVKLWPIQVVLTVL-----------FLAYSAVETQLFSNYFLY 239 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAW--AFVFSSLTLACIIL 304 V+ ++ A+P G+VL + A M W A+ S L + L Sbjct: 240 PVLF-------------VILALPVAGLVL-----MRAYMGAGKWWMAWGSSCLYIGGTAL 281 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 +FP ++PS+ SLT+ ++ SS LTL +M V +V +P+I+ Y W Y Sbjct: 282 FGVAGIFPAIIPSNPNPGNSLTIMNSASSPLTLGIMLGVVLVFLPVIIGYQFWAYKTFAT 341 Query: 365 RITKEDIE 372 + KEDI Sbjct: 342 PMAKEDIH 349 >UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A5CR84_CLAM3 Length = 334 Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 195/370 (52%), Gaps = 38/370 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+ ++ L +G+ V DGFD GVGM FL ++DT+RR++IN+I P WD N+ WLI Sbjct: 3 LTLIWFGVIAFLFVGYFVLDGFDFGVGMSLPFLAKDDTDRRVLINTIGPVWDLNETWLIV 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AG ALFAA+P YA FSGFY+ ++ +L +L R V F++R + RWR +D I +G Sbjct: 63 AGAALFAAFPEWYATMFSGFYLLLLAILITLILRGVSFEFRHQGASDRWRGWFDAMIVVG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP + GV F N+++GVP + YTG+ LLNP+ LL G+ ++ + + G Sbjct: 123 SVVPSFLWGVVFANVVRGVPMDRHH----DYTGSTLDLLNPYALLGGLTTLSLFLVNGLQ 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 + ++T G + R R + VT+V A VW +T+ H +A + L Sbjct: 179 FAALKTDGPIRARARLLSMRVGAVTIVIAATFLVW-----------TTLTHGSAPSGL-- 225 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + AL V + + L + WAF + T+A + + Sbjct: 226 ---------------------VSALAAVALVGSYLANVRGRERWAFGLLAATIALAVASL 264 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 A+ PFVMP+S LT+ +A+SS TL +MTW A +P+IL Y AW YW RI Sbjct: 265 FTALHPFVMPASNDAAYGLTLENASSSPYTLTIMTWAAGFALPLILAYQAWTYWVFRKRI 324 Query: 367 TKEDIERNTH 376 T+ I + H Sbjct: 325 TRAVIAQAAH 334 >UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Listeria RepID=C2C3U7_LISGR Length = 350 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 198/371 (53%), Gaps = 43/371 (11%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 +W+LLV VL IGF +GFD GVGM TRFL ++ ER++++N+I P WD N+VWLITAGG Sbjct: 19 LWFLLVAVLFIGFFFLEGFDFGVGMATRFLAKSSNERKMLVNTIGPFWDANEVWLITAGG 78 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 A+FAA+P YA FSG+Y+ +++L +L R V F++R + + W WDW IF GS + Sbjct: 79 AIFAAFPNWYATMFSGYYLPFVVLLLALIGRGVSFEFRGQKDTKTWLKTWDWIIFFGSLL 138 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 PP ++GV F L +G+P +D+ + L+ G F +N F + G+ V + + G ++ Sbjct: 139 PPFLLGVLFSTLAKGMP--IDKEMNLH--GGFTDYVNIFSVWGGITIVLICLLHGLQFIA 194 Query: 190 MRTVGELHLRTRATAQ---VAALVTLVCF-ALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +R GEL +R A+ A +V L+ F ALA V+ D + A L Sbjct: 195 LRVEGELRIRATKLAKKVWFATVVALLIFVALAFVYT-------------DLFTARPVL- 240 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 P++ L VV LL+ + F F L + + Sbjct: 241 ----------------VPLM---IGLVVVFYLLSGFFLWKGREILTFTFGGLGIVFTVGA 281 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + +FP VM SS +LT+++A S +L+VMT VAV L+P +L Y W Y+ R Sbjct: 282 IFVGLFPRVMISSITEAYNLTIYNAASGHYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKR 341 Query: 366 ITKEDIERNTH 376 ++ D E+ T+ Sbjct: 342 VS--DKEKLTY 350 >UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Propionibacterium acnes RepID=Q6ABD4_PROAC Length = 357 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 203/375 (54%), Gaps = 41/375 (10%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + L +W++L+ VL +GF +GFD GV ML FLGR+D +RR+M+N+I P WDGN+VW Sbjct: 10 HSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVW 69 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+TAGGA FAA+P YA FSG Y+ ++LVL L R V F+YRSK + WRN +DW Sbjct: 70 LLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMA 129 Query: 124 FIGSFVPPLVIGVAFGNLLQGV---PFNV-DEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 IGSF+P LV+GV F N ++G+ P + D T +F+ L PF L+ G++ V + Sbjct: 130 TIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFALIGGILFVVL 189 Query: 180 IITQGATYLQMRTVGELHLRTRAT-AQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHY 238 GA ++ ++T+G++H R R T A++ + T+V VW + YV + Sbjct: 190 FCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVAL----VWALMFNIMYVTRD----- 240 Query: 239 AASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298 ++V + W I L VVL + AF+ ++L Sbjct: 241 ------GRQV---------------LTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALG 279 Query: 299 LACIILTAGIAMFPFV--MPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 +A +I+ AM+ + PS + MW A+++ TL +MT A V VPI+L Y Sbjct: 280 IALMIVACMFAMYGNLGYRPSGIAFD----MWIASATGRTLKIMTISACVFVPIVLAYQV 335 Query: 357 WCYWKMFGRITKEDI 371 W YW R+T+E I Sbjct: 336 WSYWVFRKRLTREAI 350 >UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPM5_9FIRM Length = 338 Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 193/375 (51%), Gaps = 39/375 (10%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+D +L W++L+ VL GF +GFD GVG L FL ++ ER ++ +I P WDGN Sbjct: 1 MMDLTIL---WFILITVLFTGFFFLEGFDYGVGGLLPFLSSDEEERGEILRTITPVWDGN 57 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VW+ITAGGALFAA+P VYA FS FY+A+ L+L +L R V FD R + E W+ WD Sbjct: 58 EVWMITAGGALFAAFPHVYATMFSAFYLALFLMLVALILRGVAFDLRGRQESRCWKRFWD 117 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I GS VP + GVA NL+ G+P N ++ Y G FF LL P+ ++ G+ + + Sbjct: 118 GAICFGSVVPAFLWGVAVTNLIAGLPINE----KMIYMGGFFDLLTPYTIVGGLAFLFVF 173 Query: 181 ITQGATYLQMRTVG-ELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 + G +L +R L LR + A + ++ F L + D + Sbjct: 174 LFHGTAFLTLRLAKTSLILRCQEVALKTGAIAVIFFVLCMAMTLTYTDLF---------- 223 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + P+ + A + V + +L+ ++ K +F+ SS + Sbjct: 224 -TKPVAAVALVGAALFFV--------------------MAMLSMKLGKGKASFLLSSAAI 262 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 + +FP +M SS SLT+ +A+SS TL+VMT A + VPI+L+Y +W Y Sbjct: 263 VATTVAFFAGLFPRLMVSSLNPAWSLTITNASSSPYTLSVMTVAAGIFVPIVLIYQSWSY 322 Query: 360 WKMFGRITKEDIERN 374 + R+T +D E + Sbjct: 323 YIFRKRVTAKDAEEH 337 >UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Mobiluncus RepID=C2KPN0_9ACTO Length = 387 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/394 (32%), Positives = 201/394 (51%), Gaps = 63/394 (15%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L+ +W++LV VL G+ + +G+ +G GML R +G++DTER ++ SI PHWDGN+VWL+ Sbjct: 4 ILQILWFILVAVLWAGYLILEGYGLGTGMLMRIIGKSDTERGQIVRSIGPHWDGNEVWLL 63 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGA FA+ P YA FSG Y+A+ L+L L R ++R+K++ WRN WDWG I Sbjct: 64 TAGGATFASSPEWYAVMFSGMYLALFLILVCLIVRISAIEWRNKVDSESWRNKWDWGHTI 123 Query: 126 GSFVPPLVIGVAFGNLLQGV------------PFNVDEYLRLYYTGN------------- 160 +++ P+++G AFGNL+ G+ P DE + N Sbjct: 124 SAWLVPILLGTAFGNLVSGMMIAVVDPKQPFTPIPPDEIDPSKHVHNLIGLGDMPLGQLL 183 Query: 161 --FFQLLNP----FGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVC 214 F+ + +P F LL G+V + +TQGA +L ++T E+ R+ A A ALV+ Sbjct: 184 SLFYNVPSPINGVFNLLGGLVIASLCLTQGALFLSLKTTDEVRERSEALAPKLALVSTAL 243 Query: 215 FALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVV 274 A+ +W + G F I I A+ ++ Sbjct: 244 TAVFAIWGTFAYMG----------------------------AGFIFALIFLVIAAVCLI 275 Query: 275 LPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNA-SLTMWDATSS 333 + L + K AF+F+S +A + +FP+VM SS SLT+W+++++ Sbjct: 276 VGLFFAFQRSIGK---AFIFNSAGVAFAVAWVFAMIFPYVMKSSINTEKYSLTIWESSAT 332 Query: 334 QLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 T VMT AV+LVP++L YT W + RI+ Sbjct: 333 PGTQIVMTIAAVILVPVVLGYTIWSVYMFRSRIS 366 >UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Bacteria RepID=Q2IFY9_ANADE Length = 349 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 214/360 (59%), Gaps = 31/360 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++LVGVL+ G+AV DGFD+GVG+L+ F R++ ER++ + +I P WDGN+VWL+T Sbjct: 3 LNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLF-ARDEEERQVHVKAIGPVWDGNEVWLLT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P+VYA FSGFY+A++L+L +L R V ++RS+++ WR +D +G Sbjct: 62 GGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRSQLDGAAWRRGFDLAFGVG 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P +++GVA GN+L+GVP + + G+F LL+P+ +L G+VS+ M GA Sbjct: 122 SLLPAVLLGVAVGNVLRGVPVTAAQ----EWAGSFLGLLHPYPVLVGLVSLSMFTLHGAL 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L+++ G L A++A V + A A + + V + A +NPL Sbjct: 178 WLRLKAEGALE------ARMARWVPRLWGAFAATYAIATAASLVEAPHLFAGALANPLFL 231 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + L + ++G + P+L+ R A AF+ SSL + +IL A Sbjct: 232 ALT---------------LLVVASIGAI-PVLS----RRGAAGKAFLASSLAIVSMILVA 271 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 ++MFP ++PSS LT+++A+SS TL VM +A+V +P+++ YTA Y G++ Sbjct: 272 AVSMFPRLVPSSIDPAYDLTVYNASSSPRTLAVMLVIALVGMPLVIAYTALVYRVFRGKV 331 >UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Actinomycetales RepID=D1BV47_XYLCX Length = 362 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 203/370 (54%), Gaps = 44/370 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGR-----NDTERRIMINSIAPHWDGNQ 61 L +W++L+ VL G+ V +GFD GVGML R ERR++IN+I P WDGN+ Sbjct: 3 LSILWFVLIAVLWTGYLVLEGFDFGVGMLLSIFPRGTAKQKHDERRVLINTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA FSGFY+ ++L+L +L R V F+YR KI W +D Sbjct: 63 VWLLTAGGATFAAFPEWYATLFSGFYIPLLLILVALIVRVVAFEYRGKIASAVWARRFDV 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + IGS+VP ++ GVAF NL++GV +VD Y G F+ LLNPF LL G+ ++ + + Sbjct: 123 LLQIGSWVPAVLWGVAFANLVRGVQLDVDH----QYVGGFWALLNPFALLGGLTTLVLFL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G+ +L ++T GEL LR R AA ++L +AG W ++ Sbjct: 179 LHGSVFLALKTDGELRLRAR---TFAARLSLAAVVIAGGWAVWA---------------- 219 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 V F+ T A+ + L + + AR + +WAF S++ + Sbjct: 220 --------------QVAFSVTWTWAAVAVAALCLVGVVVTNAR-GRESWAFTLSAVAIVA 264 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ +M+P VMP SL++ A+S+ TL VMTWVAV+L P+++ Y +W YW Sbjct: 265 AVVLIFGSMYPDVMPGLD-GGPSLSIAAASSTPYTLTVMTWVAVILTPVVIAYQSWTYWV 323 Query: 362 MFGRITKEDI 371 R+T D+ Sbjct: 324 FRRRLTTSDL 333 >UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Coriobacteriaceae RepID=C8WK01_EGGLE Length = 345 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 38/369 (10%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 +W+LL+ VL+ G+ V DGFD+G G+L F+ + D E+ ++ SI P WDGN+VWL+TAGG Sbjct: 9 LWFLLIFVLIAGYFVLDGFDLGAGVLYPFVAKGDEEKAVVRTSIGPVWDGNEVWLLTAGG 68 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 ALFAA+P YA FSGFY+A++LVL L R V +YR + +W +WD F+GS + Sbjct: 69 ALFAAFPAAYATTFSGFYLAVMLVLFGLIVRAVSLEYRGI--DHKWAKVWDGCFFVGSLL 126 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTG-NFFQLLNPFGLLAGVVSVGMIITQGATYL 188 P L++GVA GN+ G+P + + YTG L+ PF LL G++ + M + QGA++L Sbjct: 127 PALLLGVAVGNIYAGIPMSANG----DYTGIPLLGLITPFTLLCGLLGLSMFLAQGASWL 182 Query: 189 QMRTVGELHLRTRATAQVAAL--VTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ L+ RA L V+LV F + + GI A +PL Sbjct: 183 ALKAPKPSDLQARAAKLRFPLQIVSLVLFVAVTAYALLGIQ-----------PAMDPLLG 231 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTAR-MDKAAWAFVFSSLTLACIILT 305 V W + AL VV + ++ A+ D AF+ S A ++L Sbjct: 232 AV----------------RWLLAALFVVAIVASVFFAKSKDCDLGAFIAQSGAAALLVLL 275 Query: 306 AGIAMFP-FVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 +MFP FV+ S+ + ++T A SS+LTL MT + V +P++L+Y Y G Sbjct: 276 LAASMFPNFVVASADSVGPAITAMSAASSELTLMWMTIITCVGLPLVLVYHVIIYRTFRG 335 Query: 365 RITKEDIER 373 R+ +ED+ Sbjct: 336 RVKEEDLAH 344 >UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Bacteria RepID=A7HAW4_ANADF Length = 342 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 193/370 (52%), Gaps = 32/370 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ +W+ L+GVLL G+AV DGFD+GVG L L R D +RR+++NSI P WDGN+VWL+T Sbjct: 3 LQVLWFALLGVLLAGYAVLDGFDLGVGTLY-LLARRDEQRRVLLNSIGPVWDGNEVWLVT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P YA FS Y +L++ +L FR V ++RS+ WR WD F Sbjct: 62 FGGALFAAFPRAYATTFSALYTPFMLLILALIFRAVAIEFRSRRPSRAWRTTWDVAFFAA 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + PL+ G A NL++G+P D ++ G LL+P+ LL G ++ + GAT Sbjct: 122 SALSPLLFGAAIANLMRGLPVRADGEAQIALLG----LLSPYALLVGAFTLSLFALHGAT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T GELH R A AA V + L ++ + I ++T + Sbjct: 178 WLLLKTEGELHEDVRRWAWTAAGVFSTLYLLTTIFTLVAIP----RATAN---------- 223 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + W+V N +P + + AFV S+ T+ +++ Sbjct: 224 -LAELRWGWVVVVLNVLAAGNVPR-----------AVYLRRYGQAFVSSAATIVALVVLF 271 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 G+A +P ++ S+ S+T+ + +S+ TL M +A + +P +L YT YW G++ Sbjct: 272 GLAQWPNLVTSTLDPAFSITIRNGSSTAPTLRNMAIIAAMGMPFVLGYTGLIYWVFRGKV 331 Query: 367 TKEDIERNTH 376 +E R H Sbjct: 332 -REGEHRGGH 340 >UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R937_9CHLA Length = 342 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 203/371 (54%), Gaps = 33/371 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 MI+ L FIW+ L+ G+A+ DGFD+GVGML F + D ERR+M+NSI P WDGN Sbjct: 1 MINASSLEFIWFSAFVALVTGYAILDGFDLGVGMLHLF-SKKDEERRLMLNSIGPVWDGN 59 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWL+TAGGALFA +P +YA S FYV ++++L L FR V ++RSK WR MWD Sbjct: 60 EVWLVTAGGALFAGFPDIYATLCSAFYVPLMILLGGLIFRAVAIEFRSKRPMPWWRWMWD 119 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 + S + L +GV GNL++G+P + + +TG+ LL+P+ LL G+++V + Sbjct: 120 VLFSLASLIIALALGVVLGNLIRGLPLDAQK----EFTGDLSSLLHPYALLIGIMAVALF 175 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G ++ M+T GELH + R+ + ++ ++L V +T+ + Sbjct: 176 CMHGGIFILMKTEGELHDKIRSWINPFIIFFIITYSL------------VTMATLIYM-- 221 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAW-AFVFSSLTL 299 P + ++E PI + + A+G +L + I W AFV S + Sbjct: 222 --PHMIKTIQE----------RPIFFLL-AVGNMLSIANIPREINQGKDWLAFVSSCFNI 268 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ++L + +P V+ + + SLT++++ SS+ TL ++ +A++ +P++L YT Y Sbjct: 269 VFLMLLYAVGTYPEVVRAINDPSLSLTIYNSASSEKTLEILIIIALIGIPLVLAYTTAIY 328 Query: 360 WKMFGRITKED 370 W G++ + Sbjct: 329 WIFHGKVKLDS 339 >UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Bacteroidetes RepID=C7M6E4_CAPOD Length = 344 Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 183/366 (50%), Gaps = 34/366 (9%) Query: 11 WWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 W++++G L+ G+A+ DGFD G G F + ERR+ +N+I P WDGN+ WL+ G Sbjct: 13 WFIIIGFLITGYAILDGFDFGAGAWHLFFDKKK-ERRVALNAIGPVWDGNEAWLVIGGAG 71 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 +FA +P++YA FS +L L + FR V + R K + RWRN WD + S V Sbjct: 72 IFAGFPLMYAELFSAMNTPFMLFLTFIIFRAVAIEVRGKEDSDRWRNTWDTVYSVCSIVL 131 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQM 190 P+++GV N+LQG+P +DE + Y G F L P+ LL GV+++ + + G YL + Sbjct: 132 PVLLGVVIANVLQGLP--LDENFQ-YTGGALFTFLTPYALLVGVMTLLLFMVHGGLYLLL 188 Query: 191 RTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVR 250 +T G++H R A L LV F ++ M H A Sbjct: 189 KTHGDMHHRIEKRINYAYLGFLVVFTAVAIYSM----------LTPHLAE---------- 228 Query: 251 EAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAM 310 N N L PAL ++ L + AFV + LT+ ++ A + + Sbjct: 229 -------NIANNTALKVFPALLLLSILSVAFFMKKKDYKKAFVGTILTIVFFMVVAALNL 281 Query: 311 FPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKED 370 P + ++ S+T+++A +SQ +L +M + + P++LLYT + Y +G++ + Sbjct: 282 HPTFLRTTLETGNSITVYNAAASQKSLKIMLTITAIGAPLLLLYTYFAYKVFWGKV---E 338 Query: 371 IERNTH 376 I+ N++ Sbjct: 339 IDENSY 344 >UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax=Erwinia chrysanthemi RepID=Q937L0_ERWCH Length = 121 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/121 (70%), Positives = 104/121 (85%) Query: 259 FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSS 318 FNN P+LWA+P LGVVLPL+T + AR +K A AF+FSSL++AC+ILTAGIAMFPF+MPS Sbjct: 1 FNNHPVLWAVPLLGVVLPLMTAVMARAEKGAMAFLFSSLSIACVILTAGIAMFPFIMPSV 60 Query: 319 TMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSL 378 T+ N SLT+WDATSS LTL VMT VA++ VPI+L YT WCY+KMFGRITKE +E+N+HSL Sbjct: 61 TVPNVSLTVWDATSSLLTLRVMTVVAIIFVPIVLSYTIWCYYKMFGRITKEHVEQNSHSL 120 Query: 379 Y 379 Y Sbjct: 121 Y 121 >UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVU2_9DELT Length = 344 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 201/373 (53%), Gaps = 32/373 (8%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L+ IW++L +L + V DGFD+G+G L F+G N+ ERRIM N+ P WDGN+VWL Sbjct: 3 ETLQVIWFILWALLWAVYFVLDGFDLGLGSLLPFIGSNEEERRIMYNAAGPFWDGNEVWL 62 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 I+AGG FAA+P VYA FS Y ++++L +L FR V F++R K+E WR WD F Sbjct: 63 ISAGGVTFAAFPKVYAVMFSALYAPLLILLFALIFRAVSFEFRGKVESGVWRGFWDLVHF 122 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 + + VP L++GV F NL G+P + + + G L+N +G+ + + M + G Sbjct: 123 LSNLVPSLLLGVTFANLFMGIPIDGEG----VFHGTLMGLVNGYGIAGAIFFLVMFMLHG 178 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 + +L +++ GEL R A+A + V L+ V + D + ++++ L Sbjct: 179 SLWLAIKSQGELQTRAVASATLLWPVMLILLVAFLVLTFFNTDLF-----NNYWSNPLLL 233 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 VV AG LGV L R + A++ S++ + + Sbjct: 234 LLPVVALAG----------------LLGVRCML------RRGQLWKAWMCSAVYIIGVTF 271 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + MFP ++ SS A+LT ++A+SS+LTL +M VA+V+VPI+LLY W Y Sbjct: 272 FGVMGMFPRMLISSIDPTATLTAFNASSSELTLKIMLGVALVMVPIVLLYQFWVYRLFSH 331 Query: 365 RITKEDIERNTHS 377 ++ ED+ ++ H+ Sbjct: 332 SLSAEDL-KDEHA 343 >UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 Tax=Bacillus RepID=Q816N2_BACCR Length = 345 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/376 (31%), Positives = 189/376 (50%), Gaps = 33/376 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++ +++L IW+ L GV+ + + DG+ +G GM+ F+ ++ ER + +I P W GN Sbjct: 3 LMSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGN 62 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWLITAGGA FAA+P+ YA FS Y + LVL +LF R G ++ K + W+ Sbjct: 63 EVWLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCK 122 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W IGSF+ + GV F NL G+ + Y GN LLN +G+L G+ + Sbjct: 123 WAFAIGSFLIAFLFGVTFANLYYGLQIGKNGY-----EGNLLSLLNHYGILGGLFFTAIF 177 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + GA ++ ++T GE+ R A+ ++ + A+ V A Sbjct: 178 VVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYV------------------AT 219 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 +N N NF P+L+ +P L +++ +L ++ K AF F LT+A Sbjct: 220 ANRTN---------LFQNFTEYPVLFILPVLAMLMSVLALIMVYKHKIGLAFTFVCLTIA 270 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + T MFP ++PS S T+++A SQL L +M +VA+V+VPI++ Y W Y Sbjct: 271 MFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIGYQLWSY- 329 Query: 361 KMFGRITKEDIERNTH 376 +F +D + H Sbjct: 330 SIFKNKIHKDSAKGYH 345 >UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSG2_ACIC1 Length = 348 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 187/370 (50%), Gaps = 34/370 (9%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + + VL W+ L+G+L G+ +GFD GV ++T + +++ +RR+ +NS+ P WDGN+ Sbjct: 1 MSFGVLDTTWFSLIGLLWAGYLFLEGFDFGVALITPLVSKDEIDRRMCLNSVGPFWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI AGGA FAA+P+ YA FSGFY+A+ L+L +L R V F++R+K WR WDW Sbjct: 61 VWLIVAGGATFAAFPLWYARLFSGFYLALFLILLALIARGVSFEFRNKDHRPAWRRTWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 F+GS +PP V GVAF NL+ G+P + Y G LL+P +L G +V ++ Sbjct: 121 ANFLGSLIPPAVWGVAFTNLVVGLPLDSGG----VYRGGLAGLLHPIAVLGGAATVALVS 176 Query: 182 TQGATYLQMRTVGELHLRTRATA-QVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 GA +L ++T L RTR+ A + TL+ A V+ + K+ + Sbjct: 177 FHGANFLLLKTSSGLAHRTRSVAVPLGVAATLLTGA-----VVLAVALTRGKALPEALPG 231 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARM-DKAAWAFVFSSLTL 299 PL V AG F L AR D AA+A SL L Sbjct: 232 VVPLAMAVAGVAGVAAGTF---------------------LVARARDGAAFAATGGSLLL 270 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 + A MFP V P S+T+ A S TL VMT VA + P++L Y W Y Sbjct: 271 TMGAVFA--RMFPTVFPDFHHPAHSVTIAAAASGHYTLVVMTIVAAIFTPLVLAYQGWTY 328 Query: 360 WKMFGRITKE 369 W R+ + Sbjct: 329 WVFRRRLMRP 338 >UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax=Corynebacterium RepID=B1VE35_CORU7 Length = 321 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 181/363 (49%), Gaps = 50/363 (13%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 +W+ L+ L G+ + +GF GVG+L FLGR++ R MI +I P WDGN+VWLITAGG Sbjct: 8 LWFGLIVFLFAGYFMLEGFGFGVGLLLPFLGRDEARRSAMIRTIGPVWDGNEVWLITAGG 67 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 ALFAA+P YA FSGFY+ + L+L L R VG ++R+K+ +WR D GI GS++ Sbjct: 68 ALFAAFPAWYADMFSGFYLPLFLILLGLIVRIVGLEWRTKVNSAKWRAWCDAGIITGSWI 127 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 P+V GVA NL+ G+P N + + L +P+ L+ V + G T+++ Sbjct: 128 SPIVWGVAVANLVSGIPEN---------AAHVYPLFHPYALVGAAALVCVFALHGLTFIR 178 Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 ++T G L + A+ ++V GV+ ++ GY Sbjct: 179 LKTAGVLRKEAQRFITPLAIGSIV---FGGVFALWTQLGY-------------------- 215 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 AW W L VV L ++ + WAF ++L + +++ A A Sbjct: 216 --GKAW---------TWVPLVLAVVGLLGSVAATVAQRDGWAFTATALAIVSVVVLAFGA 264 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 MFP M+ L +W A S+ TL +MTW V++ P +LLY + YW RI E Sbjct: 265 MFP-------MLWTDLDIWQAASNPYTLKIMTWAGVIVTPFVLLYQGYTYWIFRRRIVAE 317 Query: 370 DIE 372 + Sbjct: 318 PVH 320 >UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=Q67RR5_SYMTH Length = 342 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 125/365 (34%), Positives = 192/365 (52%), Gaps = 34/365 (9%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +E+L+ IW+ L G+L + DGFD+G GML R D E+ +I S+AP WDGN+ Sbjct: 1 MSHELLQVIWFALWGLLWAIYFGLDGFDLGSGMLAGIF-REDEEQHHLIGSLAPIWDGNE 59 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNMWD 120 VW+ITAGG FAA+P +YA FS Y+ + ++L L FR V ++ ++ + W+ +W Sbjct: 60 VWVITAGGVTFAAFPKLYATMFSSLYLPLFIILFGLMFRAVAIEFYHHMDYDAGWQKIWG 119 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W + + SF+ + GVAFGN+ QG+ + Y G LLNP+GLL GV+ V Sbjct: 120 WVLSVASFLVAFLFGVAFGNIFQGMLLDAQGY-----HGTVLSLLNPYGLLTGVLFVVAF 174 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + GA++L + + R +A A + +A W++Y Sbjct: 175 LMNGASWLAHKAPDD-GFRAKADT-FAKRMWPAVLVVAAAWLVY---------------- 216 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 P ++ N+ P L+ +PAL VVL +LT + + A A + SLT+ Sbjct: 217 -TPFATRLME-------NYLKVPALFVVPALAVVLLVLTRVYLEKGRHALALLMGSLTVG 268 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++ A I +FP + PS SLT ++++SS TL M WV VV +P +LLY W Y Sbjct: 269 ITVVAAVIGLFPNMFPSRIDPAYSLTAFNSSSSHYTLQFMFWVVVVFLPFVLLYQIWAY- 327 Query: 361 KMFGR 365 ++FGR Sbjct: 328 RLFGR 332 >UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGP9_NAKMY Length = 338 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 194/360 (53%), Gaps = 36/360 (10%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 +W+++V GF V +GFD GVG L + +GR DTERR+ INSI P WDGN+VWLI AG Sbjct: 6 VWFVIVAFFWTGFFVLEGFDFGVGALHKVVGRTDTERRVAINSIGPFWDGNEVWLIVAGA 65 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 ++FAA+P YA+ FS Y+A+ L+LA+L R V F++R K WR+ W W + +GS + Sbjct: 66 SMFAAFPNWYASWFSALYLALWLLLAALIVRGVSFEFRGKFAAPAWRHTWGWTLTVGSVL 125 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 PL+IG+ G+LL G+P + +TG+F LL PFGLL G+ + + + GA +L Sbjct: 126 APLLIGIGLGDLLAGLPIDAAG----DFTGSFLDLLTPFGLLLGLTLLTLSLLHGAAFLT 181 Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 +RT G + R+RA + AL + +A VW++ V+ Sbjct: 182 LRTTGPVLERSRALVRRLALPAVALVLVAAVWMV------------------------VL 217 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 G W P + I A LP R A FV +++++ ++ + Sbjct: 218 AAPGGWGYLAVAVPAVAVIAAAVTALP------GRAGPA--TFVATAISIGALVAALFVC 269 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 ++P ++ S+T SLT+ ++ SS +L VMT A VL P++LLY W YW R+ E Sbjct: 270 LYPTLLVSTTDPAYSLTVTNSASSPYSLQVMTVAAAVLTPLVLLYQGWTYWVFRRRLRTE 329 >UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms RepID=B9P917_POPTR Length = 462 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/167 (56%), Positives = 118/167 (70%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +I Y++LR +WW L+GVLLI FAVTDGFD+G L R D ERR++INS+ P W+GN Sbjct: 215 LISYDILRLLWWGLLGVLLIAFAVTDGFDLGAAALLPLAARTDVERRVVINSLGPVWEGN 274 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FAAWP +YA +FSGFY+AM L +L RPV F +RSK EE WR WD Sbjct: 275 QVWLILGGGAIFAAWPQLYAVSFSGFYLAMFAALVALILRPVAFKFRSKREEPAWRARWD 334 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNP 167 + + VP L+ GVA GN+LQGVPF + +R+YY G FF LLNP Sbjct: 335 AVLCMAGVVPALIFGVALGNVLQGVPFRLAPDMRIYYEGTFFGLLNP 381 >UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Methanosarcina RepID=Q46G86_METBF Length = 347 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/372 (29%), Positives = 192/372 (51%), Gaps = 36/372 (9%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +++L IW+ L V+ + + D F +G G+L F+ + +R + +S+ P W GN+ Sbjct: 5 LTHDMLAIIWFFLWCVIWGVYFIVDSFSLGAGLLVPFIATDKAQRMQIQSSVGPFWGGNE 64 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI A G FAA+P+V++ F+ Y+ M+L+L L R + +Y K E + + W Sbjct: 65 VWLILAAGGTFAAFPLVFSKMFTFLYLPMMLLLIGLIARGISIEYLHKDENPHIQKILMW 124 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 G F GS + LV+GVAF N +G+ Y G L +P+ L+ GV+ V M + Sbjct: 125 GWFAGSLLISLVLGVAFANFFKGLEIASGG----VYIGTLIGLFSPYALIGGVLFVLMSV 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMY---GIDGYVVKSTMDHY 238 T GA ++ ++T G + ++ A+ +AL+ LV LA V++ Y GI+G+ Sbjct: 181 TSGAFWINVKTEGAIAIKAGDLAKKSALIVLV---LALVYLAYSFMGIEGFT-------- 229 Query: 239 AASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298 N++ P L+ +P L VV +L + A+ D+ AF + L Sbjct: 230 ------------------TNYSAMPALYLLPGLAVVTAVLAVFFAKKDRIFPAFCSNLLA 271 Query: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 ++ + +++P+++ SS + +++A SS +TL+VM A+V VPII++Y W Sbjct: 272 FLFVVESGLASIYPYMLKSSVSSEYGIDIFEAASSHMTLSVMLGGALVFVPIIIIYQLWA 331 Query: 359 YWKMFGRITKED 370 Y +I + D Sbjct: 332 YTLFREKIKETD 343 >UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex aeolicus RepID=O67371_AQUAE Length = 366 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 196/391 (50%), Gaps = 63/391 (16%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E+L IW++L+G ++ +A DGFD+GVG++ FL +++ E+RI++NSI P WD N+VWL Sbjct: 2 ELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 I AGGALFAA+P+ YA SG Y+ +IL+L L R +G DYR K+ + D F Sbjct: 62 ILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVFF 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLY----------------YTGNFFQLLNPF 168 +GS + G+ GN+++G+P + E LY YTG +L+P+ Sbjct: 122 LGSLGVTFLFGLTLGNVIKGLPVKLVEK-ELYGEVVKTHMICADQDCSYTGLLINILDPY 180 Query: 169 GLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQV----AALVTLVCFALAGVWVMY 224 LL +++V + GA Y T G+L R + A+ +AL+ L+ L ++ Sbjct: 181 ALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPL 240 Query: 225 GIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTAR 284 I Y + ++ PAL +V+ + Sbjct: 241 LIKNYFTR--------------------------------MFIFPALPIVIVAFITIIVA 268 Query: 285 MDKAAWAFVFSSLTLACIILTAGIA---MFPFVMPSSTMMNA------SLTMWDATSSQL 335 +++ ++ F S T A I GIA ++P ++PS N S+T++++ SS+ Sbjct: 269 LNRQKYSLAFWSST-AMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVFNSASSEK 327 Query: 336 TLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 TL M +A++ VP++L Y + Y +G++ Sbjct: 328 TLLTMLIIALIGVPMVLTYKFFVYRIFWGKV 358 >UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHD0_9ACTN Length = 354 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 203/383 (53%), Gaps = 47/383 (12%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 VL IW++L+ VL+ G+ V DGFD+G G+L+ F+ + D E+ ++ S+ P WDGN+VWL+ Sbjct: 3 VLGIIWFILIFVLIAGYFVLDGFDLGAGVLSPFVAKTDEEKALLRRSVGPVWDGNEVWLL 62 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGALFAA+ YA FSGFY+A+ILVL L R + +Y + + W+ W+ F+ Sbjct: 63 TAGGALFAAFAPAYATTFSGFYLAIILVLMGLIVRAISLEYSANETKPGWKKAWNALFFV 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVD-EYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS +P L+ GVA GN+ G+P N + +Y+ + G L+ PF LL G++ + M I QG Sbjct: 123 GSLLPALLFGVAIGNVYAGIPMNANGDYVGIPLLG----LVTPFTLLCGLLGLSMFILQG 178 Query: 185 ATYLQMRTV--GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 A++L ++ + +R R + A++ +V FAL V+ + ++K M Sbjct: 179 ASWLALKAPEGSAMAVRARMARRTFAILAIVFFALVTVYAL-----VIIKPEMVG----- 228 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 ++R A A L V + T + A +KA+ VF + ++AC Sbjct: 229 --GLSILRIAFAVLF---------------VAMLAATFMKATDEKASLV-VFLASSVACF 270 Query: 303 ILTA--GIAMF----------PFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPI 350 L A G ++F PF + ++ A++T+ A S LTL M + V +P Sbjct: 271 ALVALLGASLFPNLVVAGAGDPFNLFATAASGANITIETAASEDLTLAWMLGITCVGLPF 330 Query: 351 ILLYTAWCYWKMFGRITKEDIER 373 +LLY Y G++TKED Sbjct: 331 VLLYHFLVYRTFAGKLTKEDASE 353 >UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB n=53 Tax=Bacteria RepID=A0PP39_MYCUA Length = 538 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 118/375 (31%), Positives = 193/375 (51%), Gaps = 52/375 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTR---FLGRNDTE--RRIMINSIAPHWDGNQ 61 L+ +W+ ++ VL +GF + +GFD GVGML G D E RR +N+I P WDGN+ Sbjct: 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLIT+G A+FAA+P YA FS Y+ ++ +L + R V ++R K+++++WR + D+ Sbjct: 63 VWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWRALADF 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI GS++P ++ GVAF L++G+P + + L L + +LN + LL G+ + G+ + Sbjct: 123 GIAAGSWLPAILWGVAFAILVRGLPVDANGRLAL----SIGDVLNAYTLLGGLATAGLFL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVM--YGIDGYVVKSTMDHYA 239 GA ++ ++T G + A V +L V A GVW YG Sbjct: 179 FYGAVFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLAYGKQ------------ 226 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALG---VVLPLLTILTARMDKAAWAFVFSS 296 W LG V +L R WAF+ + Sbjct: 227 --------------------------WTWALLGVAVVAQMAAVLLVWRRVSDGWAFLCIA 260 Query: 297 LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 + +A ++L A++P ++PS+ ++T+++A+S+ TL +MTWV + P+ ++Y A Sbjct: 261 VVVAAVVLLLFGALYPNLVPSTLNERWNVTVYNASSTPYTLKIMTWVTALFAPLTVVYQA 320 Query: 357 WCYWKMFGRITKEDI 371 W YW RI+ E I Sbjct: 321 WTYWVFRQRISAERI 335 >UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=53 Tax=Lactobacillales RepID=Q040K6_LACGA Length = 340 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 109/339 (32%), Positives = 175/339 (51%), Gaps = 35/339 (10%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 F T+GFD GVGM T+FL RND E+ +M+ +I PHWDGN+VWLITAGGA+FA++ YA+ Sbjct: 23 FYFTEGFDYGVGMATKFLARNDQEKHLMMETIGPHWDGNEVWLITAGGAMFASFSDWYAS 82 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 FSG+Y+ + L +L R V F++ + E +W +F GS + P + + FG+L Sbjct: 83 LFSGYYILLFFTLFALIIRGVSFEFSAHAETEHGFRIWTSALFWGSLLAPFFLTMMFGSL 142 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVG-ELHLRT 200 +QGVP + + L + + ++NP ++AGV V + + G +L++R EL R Sbjct: 143 IQGVPIDAQGNMSL----SVWNIVNPLSVVAGVAGVLLCLIHGINFLRLRIDDPELSERA 198 Query: 201 RATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFN 260 + + LV + + + V + D + ++ Sbjct: 199 ASLNEKLYLVAYLGEVVFALLVFFQTDFFKLRPISSTIIT-------------------- 238 Query: 261 NTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM 320 + VVL + ++ +K AFV S LTL ++ +FP V+ ++ Sbjct: 239 ---------LIIVVLTAWSDISLIKNKQVAAFVTSGLTLVGVVGLLFNGLFPRVLIATDS 289 Query: 321 MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 + SL + A +S+LTL VMT VA++L+PI L+Y W Y Sbjct: 290 AH-SLLIKTAANSKLTLEVMTIVALILLPIALVYIIWSY 327 >UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAP6_PARUW Length = 310 Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 103/334 (30%), Positives = 170/334 (50%), Gaps = 31/334 (9%) Query: 35 LTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVL 94 + + D ERR+M+NSI P WDGN+VWL+TAGGALFA +P +YA S FYV ++ +L Sbjct: 1 MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALL 60 Query: 95 ASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLR 154 ++L FR V ++RSK + WR WD +GS + ++G+ GNL++G+ +D Y Sbjct: 61 SALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGM--QLDGYKE 118 Query: 155 LYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVC 214 + G LL P+ LL G ++V + + G+ Y+ M+T GE H R R A V+ + Sbjct: 119 --FIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKA-----VSCII 171 Query: 215 FALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVV 274 F + + Y I M H + F + P + I + ++ Sbjct: 172 FFI----ITYAITTMATLIYMPHMIEA-----------------FRHNPFFFIIALINLL 210 Query: 275 LPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNA-SLTMWDATSS 333 K + AF+ S L + C++ I +P V+ S + SLT++++ SS Sbjct: 211 AIANIPREIYFGKDSRAFICSCLNIICLLALYAIGTYPNVIRSIDQPDVLSLTIYNSASS 270 Query: 334 QLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 TL ++ +A++ VP+++ YT Y+ G++ Sbjct: 271 VKTLEILFLIALIGVPLVIAYTTAIYYIFRGKVK 304 >UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Acidobacteria RepID=Q1ILJ8_ACIBL Length = 349 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/354 (32%), Positives = 187/354 (52%), Gaps = 39/354 (11%) Query: 26 DGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSG 85 DGFD+G G+L F+ R D ERR++I SI P WDGN+VWL++AGG L+ A+P +YA+ FSG Sbjct: 20 DGFDLGAGVLHLFVARTDEERRLIIRSIGPVWDGNEVWLLSAGGTLYFAFPQLYASGFSG 79 Query: 86 FYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGV 145 FY+ +++VL L R +G ++R+ I+ W+ +D + S + + G A GN+++GV Sbjct: 80 FYLPLMMVLWLLMGRAIGIEFRTHIQSDVWKGFFDVVFSLSSLLLTIFFGAALGNVIRGV 139 Query: 146 PFNVDEYL-----RLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRT 200 P D Y + G +L+ + +L GV++ + GA Y+ +T G+L+ R Sbjct: 140 PLGEDRYFFEPLWTNWRVGPHPGILDWYTVLCGVIAAVTLTAHGAFYVASKTEGDLNQRC 199 Query: 201 RATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFN 260 R TA V V ++ T+ A+ + EV L N+ Sbjct: 200 RKTAAVLWPVQVLL-------------------TIVSLIATTSIRPEV-------LANYK 233 Query: 261 NTPILWAIPALGVVLPLLTILTARM---DKAAWAFVFSSLTLACIILTAGIAMFPFVMPS 317 P+ W IP L VV L + R DKA AFV S+L + +++ A A++P V+P+ Sbjct: 234 RWPVGWLIPIL-VVATLGGMFVFRKKGNDKA--AFVSSALYITVMLVGAVFALYPTVLPA 290 Query: 318 STMMNASLTMWDATSSQLTLNV-MTWVAVVLVPIILLYTAWCYWKMFGRITKED 370 ST + SLT+ +A++ L + + W ++ +V + Y + Y G+++ D Sbjct: 291 STNPDWSLTIQNASAPTYGLTIGLVWWSIGMV-FTVGYFVFVYRMFRGKVSLSD 343 >UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Lactobacillales RepID=B1MXQ3_LEUCK Length = 337 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 45/372 (12%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L IW++L+GVL GF +GFD G+GM R+ +R + +I P+WD N+VWL+ Sbjct: 3 ILEIIWFVLIGVLWAGFFFLEGFDFGIGMQFALNARDQKDREALYQAIGPNWDANEVWLV 62 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGA FAA+P YA+ FSGFY+ + +VL SL +R V F++R + + +W+ I + Sbjct: 63 TAGGATFAAFPAWYASLFSGFYLMLFIVLLSLIYRGVSFEFREHMPTVQGTQLWERLIAL 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 SF+ P +G+ F ++ G+P + L + FF + PF L+ GV M G Sbjct: 123 TSFLVPFFLGMIFTAMVSGMPIDARGNL----SAGFFDYVTPFSLVGGVAVSLMSYVHGL 178 Query: 186 TYLQMRTVGELHLRTRATAQVAAL--VTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 Y ++R G+ LRTRA Q+ L + L AL V + + D Sbjct: 179 NYTRLRIDGK--LRTRALKQLEYLYPILLAGEALFAVLLFFYTD---------------- 220 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTI----LTARMDKAAWAFVFSSLTL 299 F T +W + L VV+ L T+ L + FV S LTL Sbjct: 221 ---------------FIQTQTVWTLSIL-VVIVLTTVIGWLLAIKQKMEKLPFVLSGLTL 264 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 +++ + +FP VM ++ ++ +L + + +SS TL VMT V V +P+ L Y W + Sbjct: 265 VEVVVLLFVGLFPRVMVANNPLH-TLNIMNTSSSTYTLKVMTIVVVTALPVTLGYQIWSF 323 Query: 360 WKMFGRITKEDI 371 W RI + Sbjct: 324 WVFRKRIVSHKV 335 >UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol oxidase subunit II n=47 Tax=Proteobacteria RepID=Q0BVW7_GRABC Length = 342 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 181/370 (48%), Gaps = 38/370 (10%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG-RNDTERRIMINSIAPHWDGNQVW 63 E L +IW +++ V ++ + + DGFD+G G+L FL R + +R +M+NSIAP WDGN+ W Sbjct: 4 ENLPYIWGMIIAVAVLAYVLLDGFDLGCGIL--FLAEREEEDRDVMVNSIAPVWDGNETW 61 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ GG L A +P+ YA FS FY +I +L +L FR V F++R K R R WD Sbjct: 62 LVMGGGGLLAVFPVAYAILFSAFYPTIIAMLLALVFRGVAFEFRFKAHTLRGRRWWDRAF 121 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 +GS V L G+ G +LQGV N YTG +F L PF +L GV V Sbjct: 122 CLGSLVAALCQGMTLGGILQGVHHN-----GFAYTGGWFDWLTPFTVLCGVAVVVGYTLL 176 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 GA +L ++T LH+R R A+ ++ L+ A +W P Sbjct: 177 GACWLILKTENGLHVRARHYAKPLFILLLLLIAAVSLW--------------------TP 216 Query: 244 LNKEVVR-EAGAW--LVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 L E R +W +V P+L A ALG L + A + L Sbjct: 217 LLNETYRLRWFSWPGIVLTAPVPLLVAAMALG----FWRSLQHKRHAAPLLYAMGMFLLC 272 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + L GI++FP ++P + L++ DA + + + AVVL+P++L Y A+ YW Sbjct: 273 YVGL--GISLFPNIVPPAH-GTTPLSLVDAAAPAASQMFLLVGAVVLIPMVLGYNAYSYW 329 Query: 361 KMFGRITKED 370 G++ + Sbjct: 330 IFRGKVRHGE 339 >UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteria RepID=Q1J2Z7_DEIGD Length = 365 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 114/374 (30%), Positives = 188/374 (50%), Gaps = 53/374 (14%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 +W+ L G++ + DGFD GVG+L FL RN+ +RR +I ++ P W N+VW+I A G Sbjct: 6 LWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVILAAG 65 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 +FAA+P+ Y A +G Y L+L +L R V F+YR++++ RWR WD FI + + Sbjct: 66 VIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFITNLL 125 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 P + GV N+++G+P + E R + G+ + F +L G+ ++ + + GATYL Sbjct: 126 PAFLWGVIMANMVRGLP--IGEGAR--FQGSPLDAFDLFSVLGGLSTLSLFVLHGATYLL 181 Query: 190 MR--TVGELHLRTR---------ATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHY 238 +R T LH R R ATA V A V V F G++ G+ ++ + Sbjct: 182 LRLQTGSTLHARARRAALTWGAVATALVLAFV-YVGFIHTGLFATLGLSEWL-------F 233 Query: 239 AASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298 A +N ++ WL LT R D+ AF + LT Sbjct: 234 PAGAAVNLALI-----WLA-----------------------LTLRRDRL--AFAATGLT 263 Query: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 + T ++++P +PS+ +LT+ A S TL +++WV++ +P+I+ Y AW Sbjct: 264 IVFSTATIFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQAWN 323 Query: 359 YWKMFGRITKEDIE 372 Y+ R+ + D + Sbjct: 324 YYVFRQRVQERDEQ 337 >UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUS4_9CHLB Length = 331 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 114/368 (30%), Positives = 188/368 (51%), Gaps = 47/368 (12%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++ + +L + +GFD G G+L F+G +D ERR +IN+I P W GN+VWL++ Sbjct: 3 LHSIWFIFIALLFTILFLLEGFDFGTGILLPFMGSDDRERRSVINTIGPFWLGNEVWLVS 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FAA+P YA+ SGFY +L+L SL FR F++RSK + + +W IF G Sbjct: 63 AGGAMFAAFPGWYASLLSGFYPLFLLMLLSLIFRGAAFEFRSKFSNPALKRVSEWIIFGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP L+ GV N + GVP + YTG +LLNPF L G S GA Sbjct: 123 SLVPALLWGVILSNFISGVPVDASG----NYTGALSKLLNPFALAGGAASALTFTLYGAL 178 Query: 187 YLQMRTVGELHLRTRATAQV----AALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 +L ++T G + R A+ A L +VC A + V +++ Sbjct: 179 FLSLKTSGRVKERAIGIAKKLWAPATLSLMVCIACS-----------VTVTSIK------ 221 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 P + + +L + P++ +L + +++ AF+ ++L + Sbjct: 222 --------------------PGILPLLSLLSLAPVIVLL--QKNRSGVAFIMTALAIIFT 259 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 L ++P V+ S+ SLT+++A+SS+ TL+++T VA++ P++++ YW Sbjct: 260 ALAIFTNLYPRVLVSNLNPAWSLTIYNASSSEYTLSILTVVALIFTPLVIIAQCLSYWVF 319 Query: 363 FGRITKED 370 R++ + Sbjct: 320 RERVSTDS 327 >UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0L6_SLAHD Length = 346 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 35/367 (9%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 IW++LV VL+ G+ + DGFD+G G+L+ F+ +ND E+ ++ +I P WDGN+VWL+T GG Sbjct: 7 IWYVLVFVLIAGYFILDGFDLGAGVLSPFIAKNDEEKLTLMKAIGPVWDGNEVWLLTGGG 66 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 ALFAA+ YA FSGFY+A+ILVL L R V ++ + + WR +W FIGS + Sbjct: 67 ALFAAFAPAYATTFSGFYLAIILVLMGLIIRAVSVEFAA--HDPAWRKLWFVLFFIGSLL 124 Query: 130 PPLVIGVAFGNLLQGVPFN-VDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYL 188 P L+ GVA GN+ G+P + Y+ + G L+ PF LL G++ + M I QGA +L Sbjct: 125 PALLYGVAVGNIYAGIPMDAAGNYIGVPLIG----LVTPFTLLCGLLGLTMCILQGACWL 180 Query: 189 QMRT--VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ GEL R R + A+V +V FAL ++ + +++K + Sbjct: 181 SVKAPLEGELLARARGLRRPVAIVAIVLFALVTLYAL-----FIIKPELAA-------GL 228 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVF-----SSLTLAC 301 V+R ++ L V P + LT + + F SS+ Sbjct: 229 GVLR-----ILFALVVVAALVFVLLKAVQPEASDLTIFLVASVACFALVGLLASSMFPTF 283 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ +G + PF+ + A++T DA S LTL M + V +P++LLY Y Sbjct: 284 VVSGSGDPLTPFMTATE---GAAITAADA-SGDLTLKWMFGITCVALPLVLLYHFLVYRT 339 Query: 362 MFGRITK 368 GR+ Sbjct: 340 FAGRLAD 346 >UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 Tax=Actinobacteria (class) RepID=A1R5L7_ARTAT Length = 360 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 44/372 (11%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E+L IW++ + VL G+ +GFD+GVGML + RN+T+RR+++N+I P WDGN+VWL Sbjct: 2 ELLPTIWFVAIAVLWTGYLFLEGFDLGVGMLMKLFARNNTDRRVLLNTIGPVWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TA GA FAA+P+ YA+ FS Y+ ++ VLA+L FR V F+YR K++ WRN WDW I Sbjct: 62 LTAAGATFAAFPLWYASLFSTLYLPLLAVLAALIFRAVAFEYRGKVDSESWRNRWDWAIA 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 IGSFV IG A G+P + + +G + + LL G V + Sbjct: 122 IGSFVAAFGIGAALALTTTGLPLDANG----DRSGGPMSWFSGYALLGGFGVVAFALVHA 177 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 +L ++T GE+ R R V LV A V M+G Sbjct: 178 LAFLALKTDGEVRYRARRW-----FVRLVPVA---VLPMFG------------------- 210 Query: 245 NKEVVREAGAWLVN---FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 W+V + P WA+ VV +L AR AF + C Sbjct: 211 ----------WMVAVQFLSGKPWTWALVVAAVVAVVLAWRLARTGSEGRAFSALGAFIVC 260 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + A FP V+PS+ +LT+ +A+SS TL +M+ VA V +P+++ Y +W YW Sbjct: 261 ATASIFGAAFPVVIPSTIDPAFNLTISNASSSDYTLGLMSIVAAVGLPLVIAYQSWTYWV 320 Query: 362 MFGRITKEDIER 373 R++ I Sbjct: 321 FRRRVSAAHIPE 332 >UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDJ2_BRAFD Length = 357 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 183/371 (49%), Gaps = 38/371 (10%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGM-LTRFLGRNDTERRIMINSIAPHWDG 59 M+D VL +W+ L+ +G+ V +GFD GV M + F R R ++ +I P WDG Sbjct: 1 MLDPTVLETLWFFLIAFFFLGYFVLEGFDFGVQMNVATFWRRGTGTRGTVLRTIGPVWDG 60 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMW 119 N+VW+IT G LFAA+P YA FSGFY+A++L+L L R F +R K++ RWRN W Sbjct: 61 NEVWVITGGALLFAAFPEWYATLFSGFYLALLLLLVVLIVRVCAFKWREKVDSERWRNGW 120 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 D IG F P L+ GVAF N++ GV + + ++ T +LLNPF LL G+V V + Sbjct: 121 DVVHVIGGFAPALLWGVAFSNIVAGVSIDENRWV----TTTLLELLNPFALLGGLVFVLL 176 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 G YL ++ G L A + A LV A +W + H Sbjct: 177 FWLHGTLYLALKVEGRLREDANRLAGILAWPALVAGAAFLLWYQ-----------LAHSH 225 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 ++ L P+ A L V+PL R + AF ++ + Sbjct: 226 SALTL-----------------IPLAVAALGLLAVVPL-----NRQGREGLAFGATTAAI 263 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ++T +FP+V+P++ SLT+ +A+S+ TL VM V +P++L YT W Y Sbjct: 264 TGAVITLFGGLFPYVLPATNDAANSLTVANASSTGHTLTVMLVALCVFMPVVLAYTVWTY 323 Query: 360 WKMFGRITKED 370 R++ ED Sbjct: 324 RVFRHRVSDED 334 >UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteroidetes RepID=A5FA89_FLAJ1 Length = 358 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 186/389 (47%), Gaps = 50/389 (12%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + F W++++ +L + V DG+D G G++ F + +++ + ++I P WD N+VWLI Sbjct: 1 MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG LF A+P +YA++FSGFY+ +I++L L FR +G + R +I W ++WD I Sbjct: 61 AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF--QLLNP--------------FGL 170 S + L G+A GN+++GV + + +FF L NP F L Sbjct: 121 SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQANELGIIDWFTL 180 Query: 171 LAGVVSVGMIITQGATYLQMRTVGELH--LRTRATAQVAALVTLVCFALAGVWVMYGIDG 228 G+VSV + GA ++ +T L+ L+ L+ LVC +L +W Sbjct: 181 FLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCISLQ-IW------- 232 Query: 229 YVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKA 288 H+ P + NF PILW P L V K Sbjct: 233 --------HFIEPKPFH------------NFVENPILWFFPLLTFVGIAGLFKVRSFKKD 272 Query: 289 AWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNV-MTWVAVVL 347 F+FS+L L + +++FP V+PS+ +N SLT+++ + + L+ ++W + L Sbjct: 273 GHGFIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYGLSAGLSWFFIAL 332 Query: 348 VPIILLYTAWCYWKMFGRITKEDIERNTH 376 ++++Y Y G++ +DI H Sbjct: 333 F-LVIIYFIIQYRVFSGKM--DDIGYGEH 358 >UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RCZ4_KANKD Length = 338 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/369 (27%), Positives = 183/369 (49%), Gaps = 40/369 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 IDY + IW L+ ++ + + DGFD+G+G+L F+ +N T++ +NS+AP WDGN+ Sbjct: 7 IDYAM---IWAGLIAFAVLAYIILDGFDLGIGILFPFI-KNKTDQETAMNSVAPIWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 WL+ GG LFA +P+ Y+ Y+ +IL+L L FR V F++ + + + ++ WD Sbjct: 63 TWLVLGGGGLFAVFPLAYSVIMPALYMPIILMLLGLIFRGVAFEFHWRTKNS--QDWWDR 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 G F+GS V L G+A G L+QG+ Y G ++ L PF + G+ + Sbjct: 121 GFFLGSLVATLCQGIALGALVQGITVADRA-----YAGGWWDWLTPFSITTGIALAMGYV 175 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GAT+L M+T GEL ++ A++AA +TL+ + +W++ ++ + + + + Sbjct: 176 LLGATWLNMKTTGELQKQSVQFAKIAAWLTLLFIGIISLWMV-----FIEQQYLHRWFDA 230 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 L ++ F LL L + + + + L+ Sbjct: 231 PNLYYLIIVPLAVLFCGFQ----------------LLNGLRKGRETSPFMYAIGLFVLSY 274 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 I + I+ +P ++P S+T+W A + +L + A L+PII+ YTA+ YW Sbjct: 275 IGIL--ISFYPNLVPP------SITIWQAAAPDDSLKFLLVGAAALLPIIIGYTAYAYWV 326 Query: 362 MFGRITKED 370 G++ + Sbjct: 327 FRGKVKANE 335 >UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=A2RMA6_LACLM Length = 331 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 111/364 (30%), Positives = 182/364 (50%), Gaps = 38/364 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ W+++VGVL GF +GFD GVGM + ++ E I SI P WD N+VWL+T Sbjct: 4 LQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FA++P YA+ FSGFY+ + L+L L FR V F++R + + +W + + Sbjct: 64 AGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVA 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF P + G+ F ++QGVP + + T F +N ++ GV + + G Sbjct: 124 SFAIPFLFGLMFTGMIQGVPMDAKGNV----TATFTTYVNFLSVVGGVAVMLLAWLHGLN 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL ++T G+ LR RA A++A + V +A G VV + + Sbjct: 180 YLALKTEGD--LRKRA-AKIANFLYFVLYA-----------GEVVFAILL---------- 215 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTI--LTARMDKAAWAFVFSSLTLACIIL 304 A +F + + L +++ L + L+ R K AF+ S LT ++ Sbjct: 216 -------AVFTDFFEKHFIGTLLLLALIVILTLVAHLSVRSGKEMSAFLASGLTFIALVA 268 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 +FP VM ++ + S+ + +A+S+ TL MT + + ++P +L+Y W Y+ Sbjct: 269 LIFQGIFPRVMIATNPAH-SILIKNASSTGYTLKTMTIITLAILPFVLIYMGWTYYIFRK 327 Query: 365 RITK 368 RI K Sbjct: 328 RIQK 331 >UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamydiaceae RepID=Q255C4_CHLFF Length = 353 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 174/355 (49%), Gaps = 21/355 (5%) Query: 11 WWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 W+ ++ V + +++ DGFD+G+ + F+ R D ERR+++NSI P WDGN+VWLI G Sbjct: 13 WYAILVVAVFAYSLGDGFDLGLSTI-YFISRADEERRVLLNSIGPVWDGNEVWLIIIFGG 71 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 LFA +P Y A S FY+ + ++ FR ++RSK E T+W+ WD + Sbjct: 72 LFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVFCVSGIAI 131 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQM 190 +G GN++ G+P + Y + ++ P+ L G + V GAT+ M Sbjct: 132 SFFLGAIVGNMILGLPMSPTTQ---YSSLSWLLFFRPYAFLCGALVVSAFSIHGATFTLM 188 Query: 191 RTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVR 250 +T GELH R +V + L+ V+Y + ++ +T+ P K Sbjct: 189 KTSGELHHR---------IVKRFSYVLSAFLVIYLL---LIGTTL----VMIPQTKGYSF 232 Query: 251 EAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAM 310 G++ + P+L + A+ + L T + AF++SS L +IL++ + Sbjct: 233 PIGSF-IGVPTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILSSVALV 291 Query: 311 FPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 FP ++ S+ S T+++A +S TL + + +V +P I+ Y + Y G+ Sbjct: 292 FPNLLFSTVSSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFKGK 346 >UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=C2KAY6_9LACO Length = 338 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 185/366 (50%), Gaps = 36/366 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ +W++L+GVL GF DGFD GVGM + L N+ ER ++ +I P WDGN+VWLIT Sbjct: 4 LQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVWLIT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FA++P YA FSG+Y+ ++L+L L R V F++R+K + +++WD + IG Sbjct: 64 AGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCAPYQ-KHIWDNAMAIG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + + GV F ++++G+P + + + +FF N F ++ G+ + G Sbjct: 123 SVIATFLFGVMFISMIKGMPIDAKGNI----SASFFDYFNWFSIVGGIALTLLCYLHGLN 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 Y+ ++T G + R + AQ A WV+Y G VV +A Sbjct: 179 YITIKTKGVISDRAQNYAQ------------ALYWVLY--VGEVV------FALLLIFQT 218 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVV-LPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + +R PI I + +V + + ++K A S LTL ++ Sbjct: 219 DFMRV----------HPIATLICLVLIVGFSVAAHVATFINKQGMALACSGLTLISLVAL 268 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +FP VM SS L + A+SS TL VMT +LVP IL YT W YW R Sbjct: 269 IFCGLFPRVMISSISSKYDLLIHSASSSNYTLIVMTVATCILVPCILAYTIWAYWIFRKR 328 Query: 366 ITKEDI 371 I+ I Sbjct: 329 ISMPRI 334 >UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3T8_STRRD Length = 313 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 107/359 (29%), Positives = 167/359 (46%), Gaps = 54/359 (15%) Query: 11 WWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 W+ ++ L G+ V +GFD GVG+L L RN+ ER+ ++ +I P WDGN+VWLITA GA Sbjct: 7 WFAVIAFLWTGYFVLEGFDFGVGLLAPALSRNEAERKQVLGTIGPVWDGNEVWLITAVGA 66 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 +FAA+P YA S FY+ + LVL L R +G ++R K+ + R D GI +GS +P Sbjct: 67 MFAAFPAWYAGLLSEFYLPVTLVLVGLIVRGIGLEWRGKVHHSSDRAWCDLGILVGSALP 126 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQM 190 + G F +LL D + L+ GV S+ + + GA ++ + Sbjct: 127 AFLWGAVFADLLH------DSAIA--------------ALVGGVFSLSLCVLHGAVFVTL 166 Query: 191 RTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVR 250 +T G + R R TA V + V A SN + Sbjct: 167 KTSGPVRARARRTAMVTS---------------------AVALPAAVVALSN------IP 199 Query: 251 EAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAM 310 AG + ++ P LWA + I + WAF ++ ++A + A+ Sbjct: 200 AAGTAVADWTAAPWLWACALTAMAALAAGIALTWRGRDGWAFAATASSIALGSIALFGAL 259 Query: 311 FPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 +P +P LT+ +A S TL ++TW+ ++ +P +L Y AW YW R+ E Sbjct: 260 WPAPLPG-------LTVAEAASGPYTLGMLTWIGLIALPFVLGYQAWSYWVFRKRLVAE 311 >UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitive n=32 Tax=Proteobacteria RepID=B6IQW9_RHOCS Length = 339 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/345 (30%), Positives = 160/345 (46%), Gaps = 36/345 (10%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + + DGFD+GVG+L + D +R +M+NS+AP WDGN+ WLI G ALFA +P+ YA Sbjct: 23 YVLLDGFDLGVGILFPWAPGGDADRDLMMNSVAPIWDGNETWLILGGAALFAGFPLAYAV 82 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 Y+ ++L+L +L FR V F++R K + + R +WDW +GS GV G Sbjct: 83 LLPALYLPLLLMLIALIFRGVAFEFRFKADTS--RRLWDWSFHLGSLFATFAQGVILGGF 140 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTR 201 +QG + Y G F L PF ++ GV V GA +L M+T G L + Sbjct: 141 IQGFEVQGRD-----YAGGLFDWLTPFSIMTGVALVAGYALLGAAWLVMKTDGALQDWSY 195 Query: 202 ATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNN 261 A +A L LV A+ +W PL+ + +R+ W + N Sbjct: 196 RVAGLALLAVLVFIAVVSLW--------------------TPLHSDAIRD--RWF-SLPN 232 Query: 262 TPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMM 321 L +P L + R + FV + L I+++P+++P Sbjct: 233 LYYLSPVPLLTAAVAAALFGALRRRRETAPFVLAMGLFLLSYLGLAISLWPYLVPP---- 288 Query: 322 NASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + T+WDA S + + L+P LLYTA+ YW G++ Sbjct: 289 --AFTLWDAASPPESQVFLLVGLAFLIPTTLLYTAFTYWVFRGKV 331 >UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 Tax=Proteobacteria RepID=Q4KA99_PSEF5 Length = 338 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/367 (28%), Positives = 178/367 (48%), Gaps = 42/367 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW +++ ++ + + DGFD+G+G+L + + ER +M+N++AP WDGN+ WLI Sbjct: 8 LSLIWGVIIAFGVMMYVIMDGFDLGLGILFPLI-PDARERDVMMNTVAPVWDGNETWLIL 66 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G AL+ A+P+ Y+ Y+ +I +LA L FR V F++R K + R++WDW G Sbjct: 67 GGAALYGAFPLAYSVILEALYLPLIFMLAGLIFRGVAFEFRFKASPEK-RHIWDWAFIGG 125 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L G+ G + G+P VD + G L PF L G+ + G+T Sbjct: 126 SLLATLCQGIVIGTYISGIPV-VDR----QFAGGTLDWLAPFPLFCGLGLIVAYALLGST 180 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T G L R R + A A+ VW + L+ Sbjct: 181 WLLVKTEGMLEARMRHYTRPLAFALTAVVAVLCVW-------------------TALLHP 221 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 E+ A W + + I A+ LG+ + T R + W FVF+ + + + Sbjct: 222 EI---ANRWF-SHAHIVIFGALLVLGLAALFGLLGTLRQHHSHWPFVFTLVLVFLGYIGL 277 Query: 307 GIAMFPFVMPSSTMMNASLTMWDAT---SSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 +++P ++P S+++W+A SSQL + + T + ++P+IL+YT W Y+ Sbjct: 278 AFSIWPNIVPP------SISLWEAASPLSSQLFILIGT---LFILPVILMYTCWSYYVFR 328 Query: 364 GRITKED 370 G++ D Sbjct: 329 GKVRIGD 335 >UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XPN4_9CORY Length = 334 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 115/370 (31%), Positives = 173/370 (46%), Gaps = 48/370 (12%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG-----RNDTERRIMINSIAPHWDGNQ 61 L IW+L + VL GF V +GFD GVGML F+G ND R +++I P WDGN+ Sbjct: 3 LNTIWFLGIAVLFAGFFVLEGFDFGVGMLLPFVGGDTPEDNDRRRTAQVSTIGPLWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TA A+FAA+P YA SGF+ +L+L L R V ++R K + +WR D Sbjct: 63 VWLVTAAAAIFAAFPEWYATLLSGFFFLFVLILVGLIVRGVSLEWRVKGKTAQWRRRCDI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 G GS++P + G+ F NL+ GVP N D+ +T F L NP GL G+ V + Sbjct: 123 GTTFGSYLPAFLWGLIFTNLVAGVPLN-DKGRISSFTDGFVGLFNPLGLAGGLAFVLLFA 181 Query: 182 TQGATYLQMRTVGELH--LRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 GA ++ ++ L RT A +AA +V YVV Sbjct: 182 LHGAIFVALKAHEPLRGRARTLALRWLAAPTAIVSLL------------YVV-------- 221 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILT--ARMDKAAWAFVFSSL 297 WL N W A+ + I A D A+A ++ Sbjct: 222 ---------------WLQNVAGAQWTWIAVAVAALGIAAAIGATFANRDGFAFAATTIAI 266 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 C++L ++FP V+ ST + ++ A S+ TL +M+W ++++P +++ AW Sbjct: 267 AAVCVVLFG--SLFPDVI-RSTSAHPGWDIYSAASNPYTLRIMSWAGIIILPAVIVAQAW 323 Query: 358 CYWKMFGRIT 367 +W R+ Sbjct: 324 SFWSFRQRVK 333 >UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 Tax=Proteobacteria RepID=C8WEN7_ZYMMN Length = 340 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 105/364 (28%), Positives = 170/364 (46%), Gaps = 34/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W L V ++ + V DGFD+G+G+L +++ R +M+N+IAP WDGN+ W++ Sbjct: 8 LPVVWACLAAVGILIYVVLDGFDLGIGILFA-TQKDEKHRDVMMNTIAPVWDGNETWMVF 66 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G L A+ Y+ Y+ +I++L +L FR V F+YR R +W G Sbjct: 67 GGAVLLGAFQTAYSVILPALYLPLIVMLLALIFRGVAFEYRVHAHSKEARCLWGAAFMGG 126 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + G+ G LLQG+ D ++TG+ LNPF + GV V GA Sbjct: 127 STLATFCQGMVLGGLLQGIK-TTDH----HFTGSALDWLNPFSIFCGVALVIGYGLLGAG 181 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L RT GEL R A+ + LVC A+ VW +++ST + +N + Sbjct: 182 WLIWRTEGELQAYARRAARCLGSLLLVCIAVVAVWTP------MLRSTYLN-TWTNSSSH 234 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 V A L + ++ + P L L W F+ S L LA Sbjct: 235 AVAAVVLAVLAVLVSVIFFRSLKSGKDRTPFLCAL-------GW-FILSYLGLA------ 280 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 ++ +P+++P +T+W A+S + + V+L+P++L YT +CY G++ Sbjct: 281 -LSAWPYIVPP------YITIWQASSPVTSQTFLLVGTVILLPLVLAYTIYCYKIFHGKV 333 Query: 367 TKED 370 T D Sbjct: 334 TSSD 337 >UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyanide insensitive n=5 Tax=Legionellales RepID=Q5ZZ11_LEGPH Length = 329 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 97/364 (26%), Positives = 175/364 (48%), Gaps = 37/364 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L FI+ L+G +++ + + DGFD+G+G+L F +++ER M+NSIAP WDGN+ WL+ Sbjct: 1 MLPFIFATLLGFIVLMYVILDGFDLGIGILFPF-TSSESERDKMMNSIAPVWDGNETWLV 59 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L+ A+P VY Y+ ++L+L +L FR V F++R K + R + +W+W I Sbjct: 60 FGGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRFKAK--RSKTLWNWSFSI 117 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 S + GV G +QG F+++E T N L PF L G+ V G+ Sbjct: 118 SSVAATFLQGVILGAFVQG--FSINESSM---TINDPDWLTPFSLCTGIALVCGYALLGS 172 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T++ +++ G L + A+ ++ +W PL+ Sbjct: 173 TWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIW--------------------TPLH 212 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 E V W +F N +L +P + ++ L F++S + C + Sbjct: 213 SEEVFH--RW-YSFPNVLLLSPLPLIALMAIYLVWQNLNSGSEYKPFIYSIIIFLCSYIG 269 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I+++P+++P +T+W+A + TL + +++PI+L YT + Y+ G+ Sbjct: 270 IAISVYPYLIPH------QVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLFRGK 323 Query: 366 ITKE 369 ++ Sbjct: 324 SSEN 327 >UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CTD2_CORST Length = 336 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFL-----GRNDTERRIMINSIAPHWDGNQ 61 L +W++++ G+ V +GFD GVGML FL +D R + +I P WDGN+ Sbjct: 3 LNTVWFIIIAFFFTGYFVLEGFDFGVGMLLPFLRGESAADSDARRTAAVRAIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI AG ++FAA+P YA FSGFY+ ++L++ +L R V ++R K++ WR D Sbjct: 63 VWLIVAGASIFAAFPEWYATLFSGFYLPLLLIVTALIIRGVSLEWRVKVDTLAWRKRCDI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI +GS++P L+ GVA N++ GV F+ ++ G F LLNP GLL G + + Sbjct: 123 GIALGSYLPALLWGVAMTNIVAGVAFSSPGHVDSVIDG-FLGLLNPRGLLGGAAFLLLFA 181 Query: 182 TQGATYLQMRTVGELHLRTRATAQV-AALVTLVCFALAGVWVM 223 GA +L ++T + + A A+ A+ TL A+ VW+ Sbjct: 182 FHGALFLGLKTHAPVRTQVHAIARGWLAIATLAVGAIYLVWMQ 224 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 309 AMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 A+FP V+PS T + A L ++ A++S TL +MTW AVVL P +L+ W YW+ RI Sbjct: 276 ALFPNVLPSVTDV-AGLDIYTASASPYTLKIMTWAAVVLAPAVLIGQGWTYWQFRARI 332 >UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (CydB) n=2 Tax=Thermococcus RepID=C5A672_THEGJ Length = 331 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 113/361 (31%), Positives = 179/361 (49%), Gaps = 41/361 (11%) Query: 12 WLLVGVLLIG-FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 W L+G + DGFD+G+G L + +N +R I+IN+I P WDGN+VW IT G Sbjct: 7 WFYFSAFLLGMYLAFDGFDLGIGALLALI-KNQKDRDILINTIGPVWDGNEVWFITWGAG 65 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 LFA WP +YA FS FY+A+ L+ L FR VGF++R+K +E +WD + S + Sbjct: 66 LFAMWPALYATLFSTFYLAIWLLAFLLIFRAVGFEFRNKNKE-----LWDKLFALVSALI 120 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQM 190 PLV+GV GNL+ G+P + + + G+ L P+ L+ G+ + I GA + Sbjct: 121 PLVVGVVVGNLVMGIPIDANG-----FHGSLLTLFRPYPLIVGLFILFATIWHGANWGVY 175 Query: 191 RTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVR 250 +T G+L R A W++ + + M +A PL E + Sbjct: 176 KTTGKLQEELRGYA-------------FKFWLLTVVLLLLTVIGMKIWA---PLRFERLM 219 Query: 251 EAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAM 310 TP+ + + +V LL + + AF S L ++ +M Sbjct: 220 -----------TPLGLGLTLVILVAGLLDGHLIKKGEERLAFYISWLAFPLVVFLVYYSM 268 Query: 311 FPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF-GRITKE 369 +P+ + S+T N L++ D +S LTL + V+V+L II+ YT + Y KMF G++T+ Sbjct: 269 YPYWVISTTDPNFKLSIHDLAASPLTLKAVLGVSVILAVIIMAYTLYVY-KMFGGKVTEA 327 Query: 370 D 370 + Sbjct: 328 E 328 >UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitive n=183 Tax=Proteobacteria RepID=B0VC09_ACIBY Length = 351 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/374 (27%), Positives = 173/374 (46%), Gaps = 48/374 (12%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 MID L IW ++G+ ++ + V DGFD+G+G++ F+ +N ER +M+N++AP WDGN Sbjct: 18 MID---LSLIWVGIIGLGVLIYVVMDGFDLGIGIMFPFI-KNSQERDVMMNTVAPVWDGN 73 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 + W++ G L+AA+P+VY+ S Y+ +I ++ +L FR V F++R K T +++WD Sbjct: 74 ETWMVLGGAGLYAAFPLVYSTVLSALYLPIIFMVIALIFRGVAFEFRFKAHRT--KHLWD 131 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 GS + + G+ G +QG+ + G F L F + G+ V M Sbjct: 132 LAFIWGSVLTSFLQGIILGAYIQGIKTE-----NGIFAGGPFDWLTAFSIFTGIGVVAMY 186 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 T G +L ++T L R + L+ F ++ Sbjct: 187 ATLGCGWLILKTEKGLQQRMYELMPKLIIALLIIFGAVSLY------------------- 227 Query: 241 SNPLNKEVVREAGAWLVN---FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 PL + + L N F+ PIL V+L + IL+A + +L Sbjct: 228 -TPLTHPEIADRWFSLPNLFYFSPVPIL-------VLLFVGLILSACKKQQDHKPFIYTL 279 Query: 298 TLACIILTA-GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 L + T I+++P ++P S+T+W A + + A++L+PII+ YT Sbjct: 280 ALVFLAFTGFVISLWPNIIPP------SVTIWQAAAPHSSQMFALVGALILIPIIITYTI 333 Query: 357 WCYWKMFGRITKED 370 YW ++ D Sbjct: 334 VSYWVFRDKVRVGD 347 >UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLM4_LEGLO Length = 331 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 97/373 (26%), Positives = 170/373 (45%), Gaps = 53/373 (14%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L I+ +L+ +++ + + DGFD+G+G+L F ++ ER M+NSIAP WDGN+ WL+ Sbjct: 1 MLPLIFAVLLAFIVMMYVILDGFDLGIGILFPF-TSSEKERDKMMNSIAPVWDGNETWLV 59 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L+ +P VY A Y+ ++ +L +L FR V F++R K +++ + +W+W I Sbjct: 60 FGGAILYGGFPQVYGALLPVLYIPIMFMLIALIFRGVSFEFRFKADKS--KPVWNWLFAI 117 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS GV G +QG N + T + L PF L GV V GA Sbjct: 118 GSIAAAFFQGVILGCFVQGFSMNPQT---MAITQS--SWLTPFSLFTGVALVSGYGLLGA 172 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T++ +++ G+L + A+ + +W PL+ Sbjct: 173 TWMIIKSSGKLQAKMVHYARGLLISVSFFLVFVSIW--------------------TPLH 212 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTI---------LTARMDKAAWAFVFSS 296 E V NF LW P LPL+T L+ + F++S Sbjct: 213 SEEVFNRWYQFPNF-----LWLSP-----LPLITAFAIYLTWRNLSLNSNNERKPFIYSI 262 Query: 297 LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 + C + ++++P+++P +T+W+A + TL + +++PI+L YT Sbjct: 263 IIFLCSYIGIAVSVYPYLIPH------QITIWEAAAPSSTLTFILVGVAIMLPILLAYTL 316 Query: 357 WCYWKMFGRITKE 369 + Y+ G+ + Sbjct: 317 YAYFLFRGKTEEH 329 >UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C9B8_9PLAN Length = 346 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 178/357 (49%), Gaps = 59/357 (16%) Query: 12 WLLVGVLLIG-FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 WL++ VL+I + V DGFD+GVG+L + R+ +E++ +I SIAP WDGN+VWLI AGG Sbjct: 5 WLILLVLMIATYIVLDGFDLGVGVLHLLIARDRSEQKQIIQSIAPVWDGNEVWLIAAGGT 64 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 + A+P ++ FSGFY+ + +V+ L FR + + + ++ W + W+ +F+ S + Sbjct: 65 MMMAFPGFLSSMFSGFYLPLTMVVWLLIFRAISIELPHYLSDSLWIHFWNLMLFVASGLL 124 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQ-------------LLNPFGLLAGVVSV 177 +++G A N+ +GVP + TG+FF+ +L+ + +L+GV S Sbjct: 125 IIILGAAMANIYRGVPLDA--------TGSFFEPLWTNFRIGPPTGILDWYTILSGVTSA 176 Query: 178 GMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 ++ GA +L +T G + R A W+ G G T+ Sbjct: 177 TFLLHHGALWLVAKTDGRVQQHARQ---------------AATWLWTGSIGL----TLVI 217 Query: 238 YAAS---NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTAR-MDKAAWAFV 293 + AS PL + +F+ TP +P L VL LL R +K AF+ Sbjct: 218 FIASWYVQPLAR----------TSFSETPWKIILP-LAAVLSLLASGYLRWKNKNMPAFL 266 Query: 294 FSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDAT--SSQLTLNVMTWVAVVLV 348 S L + +I + +A++P ++P + LT+++ + +LT + W+ +L+ Sbjct: 267 SSGLFIYLVIFSGAMAIYPNILPGLNPEH-HLTIYNTSPGPEKLTTTLYWWIPGILL 322 >UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 Tax=Proteobacteria RepID=B0UGT2_METS4 Length = 347 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 166/371 (44%), Gaps = 53/371 (14%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVG-MLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W +++GV + + V DGFD+G+G M TR ND R M+ S+AP WDGN+ WLI Sbjct: 15 LPLLWAVILGVAITMYVVVDGFDLGIGIMFTR--AENDNWRDRMMFSVAPIWDGNETWLI 72 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G LF + + YA Y+ M+++L +L FR + F++R K + + + +WD+ Sbjct: 73 LGGAGLFCVFSVAYAILMPALYIPMLIMLIALVFRGIAFEFRFKADTS--KRIWDYAFHY 130 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + G+ G +QG + + G + L PF L GV V GA Sbjct: 131 GSLLATFAQGIVLGAFVQGFEVGGRQ-----FAGGTWDWLTPFSLATGVGLVCGYGLLGA 185 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T+ M+T G L + R ++ + T+V A+ WV + L Sbjct: 186 TWCVMKTTGALEIWARRKSEQFLVATIVMMAIVSAWVPF-------------------LG 226 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARM-------DKAAWAFVFSSLT 298 +++ +W IL +P +PLLT A M F+ S + Sbjct: 227 RQIEARWFSW------PSILALVP-----VPLLTAFVAYMIYRSVNDGHHTAPFLLSIVM 275 Query: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 L I++FP+++P S+T+W A ++ + +PI YTA+ Sbjct: 276 FLLGFLGLVISLFPYIVPP------SITIWQAANTVDSQMFALIGYAFALPITFAYTAYA 329 Query: 359 YWKMFGRITKE 369 Y+ G++ KE Sbjct: 330 YYVFRGKVAKE 340 >UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 Tax=root RepID=C0R3J3_WOLWR Length = 340 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 105/365 (28%), Positives = 174/365 (47%), Gaps = 37/365 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW LL+ + ++ + + DGFD+G+G+L F +D R MI+SIAP WDGN+ WL+ Sbjct: 10 LPLIWGLLIAIAVLLYILMDGFDLGIGILLPF-APSDKCRDHMISSIAPFWDGNETWLVL 68 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFAA+P+ Y+ FY+ +I++L L R V F++R K E ++R +WD+ G Sbjct: 69 GGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFK-AEGKYRRLWDYAFHFG 127 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S G+ G + GV N ++G F + F ++ G+ + G+T Sbjct: 128 SLGAAFCQGMILGAFIHGVEVNGRN-----FSGGQFDWASAFSVMTGIAVIFGYALLGST 182 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T T + A V G++ M + P Sbjct: 183 WLIMKT-------ENITQEWARKVASYTLGFVGIF-------------MGLVSVVTPFLN 222 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI-ILT 305 E ++ + NF L++IP L L + + K + F S+ + + L Sbjct: 223 ERIKNFWFSMPNFY---YLFSIPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMGYLG 279 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 GI+++P+++P T+ DA +S +L++M V + L+PIIL YT +CY+ G+ Sbjct: 280 LGISIYPWIIP------FQYTILDAAASGPSLSLMLIVIIPLLPIILTYTGYCYYVFRGK 333 Query: 366 ITKED 370 E Sbjct: 334 SNYEH 338 >UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Marinomonas RepID=A6W2X5_MARMS Length = 337 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 105/384 (27%), Positives = 174/384 (45%), Gaps = 67/384 (17%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L ++L++G + + + DGFD+G+G+L + + D ER ++ SI+ WDGN+ WL+ Sbjct: 4 LALFYFLVLGFAIFMYVLLDGFDLGIGILYPWFNQ-DGERDHLMRSISHVWDGNETWLVF 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G LFAA+P YA S FY+ ++L+L +L FR V F+YR K + + R WD+ G Sbjct: 63 GGVVLFAAFPAAYAGITSTFYLPIMLMLFALIFRGVAFEYRFKSDTS--RPYWDFAFSAG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + G+ G+++QGVP VD L++ L PF +L G + A Sbjct: 121 SAIAAFCQGMLLGSIVQGVPVGVDSLSSLHW-------LTPFSILTGFAVMAGYALLAAC 173 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL M++ G + + L+T++ + VW + ++ Sbjct: 174 YLFMKSRGRIQKHAAKLGKQLLLITILAMVIVSVWTI--------------------ASQ 213 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT-------- 298 +R+ W F+ LW P LP++T++ A + AW + S T Sbjct: 214 VEIRQ--RW---FSGVNFLWLSP-----LPIITLVVAVL---AWRDLNSHATGTVHHEGR 260 Query: 299 ---LACIILTAGIA-----MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPI 350 A + G A +FP+++P LT +A S +L + + VP+ Sbjct: 261 PFWYAATLFLLGFAGLVVGLFPYLIPR------QLTFMEAASPDSSLLFLLPGICIFVPL 314 Query: 351 ILLYTAWCYWKMFGRITKEDIERN 374 I YT W Y G++ ED + Sbjct: 315 ICTYTLWGYRVFSGKV--EDYQEG 336 >UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 Tax=Gammaproteobacteria RepID=B2SK06_XANOP Length = 339 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 169/376 (44%), Gaps = 58/376 (15%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 VL W+ ++G ++ + V DGF +G+G+L F +++ + +M+N+ AP WDGN+ WL+ Sbjct: 7 VLTVAWFAVIGFGVLMYVVLDGFVLGIGILAPF-RKDEAQLDLMMNTAAPIWDGNETWLV 65 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L AA+P Y S Y+ ++L++ +L FR V F++R K + R +W + Sbjct: 66 LCGAGLLAAFPKAYGVILSALYLPVLLMVMALVFRGVAFEFRFKAHRS--RRLWSHAFAV 123 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + GV G L+QG+P D Y+ G + +PF +L G V G+ Sbjct: 124 GSILATFAQGVILGALVQGLPIKHDRYV-----GGIWGWFSPFAMLTGAALVFGYALLGS 178 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T+L ++T G + R ++ + L L W+ L Sbjct: 179 TWLILKTEGHVQQLARQLSRPLTISVLTFIGLVSAWL-------------------PSLQ 219 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTIL--------TARMDKAAWAFVFSSL 297 V+ W F+ LW +P +PLL + T A F+ + Sbjct: 220 SHVMER---W---FSGAHYLWLMP-----VPLLVAIVGFALWRATDAERSEALPFLLAMG 268 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDAT---SSQLTLNVMTWVAVVLVPIILLY 354 L + M+P+++P T+W A SSQL + V V+L+P+IL Y Sbjct: 269 LFVLGFLGLVLGMWPYLVPPVY------TIWQAAAPPSSQLFVMVGL---VMLLPLILGY 319 Query: 355 TAWCYWKMFGRITKED 370 T W Y G++T ++ Sbjct: 320 TVWSYHVFRGKVTTDN 335 >UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ASF7_BURM1 Length = 326 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 103/362 (28%), Positives = 161/362 (44%), Gaps = 46/362 (12%) Query: 11 WWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 W+ + L+ + + DGFD+GVGMLT F G E MI SIAP WDGN WL+ AG Sbjct: 6 WFAELAFALVAYLMLDGFDLGVGMLTAFAGDARDE---MIASIAPVWDGNGTWLVIAGTI 62 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 LF A+P VY+ Y + L+LA L R V ++R K R R +WD +F+GS + Sbjct: 63 LFGAFPSVYSIVLPALYAPLCLMLAGLIMRGVAIEFRHK--AARSRRIWDVLLFVGSLLA 120 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQM 190 ++ GV G G+P VD+ L Y GN F+ +PF GV G+ +L + Sbjct: 121 SVMQGVCVGTYAHGLP--VDQ---LRYAGNGFEWCSPFSFWCGVSLALGYALLGSGWLVL 175 Query: 191 R-TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 + + A A++A + L ++ Sbjct: 176 KGQRASQRIGRDAIARLAPITALFVLSILA-----------------------STLLTET 212 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 WL++ P+L+A+P L AR D A+ A++F++ ++L + Sbjct: 213 TVETRWLLH----PLLFALPVAACATFLCAPAAARRDGAS-AYLFAAGGCIAMVLMLAAS 267 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLV-PIILLYTAWCYWKMFGRITK 368 PF++P ++A A + + + M W A + V P I+ YT Y GR++ Sbjct: 268 YLPFIVPFDLTLDA------AAAPRASQTFMFWGAGLFVMPFIVFYTCVAYSVFRGRVSN 321 Query: 369 ED 370 + Sbjct: 322 DH 323 >UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomonas campestris pv. campestris RepID=Q4UWQ0_XANC8 Length = 339 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 158/354 (44%), Gaps = 44/354 (12%) Query: 19 LIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMV 78 ++ + V DG D+GVGML R+D +R +M SI P WDGN+ WL+ GG+L A +P Sbjct: 22 VVTYVVLDGTDLGVGMLFA-ANRSDADRHLMAYSILPVWDGNETWLVLGGGSLLAMFPSA 80 Query: 79 YAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAF 138 YA + YV ++++L +L R V +YR ++ R R + D + S + GV Sbjct: 81 YAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDVVFMVASLLATFCQGVVA 140 Query: 139 GNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHL 198 G L GV + Y GN + L PF L GV V + GA +L R+ G+L Sbjct: 141 GTYLAGVAHRAGQ-----YAGNGREWLQPFPLFCGVALVVGYLLLGACWLVWRSEGQLQQ 195 Query: 199 RTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVN 258 R R A+V +V L VW+ Y + H S PL V Sbjct: 196 RARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHI--SVPLGTSV---------- 243 Query: 259 FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT-AGI--AMFPFVM 315 LG+++ + ++ +R AF+ L ++ T AG+ ++P V+ Sbjct: 244 ------------LGLMVAMYLLMRSR-----HAFLPLFAVLGVVVATYAGVLAIVYPMVL 286 Query: 316 PSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 P +T+ A S + VM VLVP L Y+++ ++ G++ Sbjct: 287 PP------DITLAQAASPPASQGVMLLAFAVLVPCTLAYSSYGFYVFRGKVKPR 334 >UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C321E0 Length = 449 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 7/205 (3%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M D +L+ +W + + VL + + V +GFD GVGML R + R+ +RR+ +++I P W N Sbjct: 1 MADLTLLQSVWLVAIAVLWVLYLVLEGFDFGVGMLLRRVRRDQLDRRVALHAIGPTWAAN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VW+I A +F A+P YAA SG Y+ + +VL S+ R G + K E+ RWR W+ Sbjct: 61 EVWVIVAVVGMFGAFPGWYAAWASGLYLPLAVVLLSIVARNAGIELLGKREDERWRLRWE 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I + S V P G+ + + G+ +E + G+ ++ P+ +L G+ V + Sbjct: 121 RVIELSSTVAPFCWGLMWAATVHGLSLRGEEVV-----GSPLDVVTPYSVLGGLALVALC 175 Query: 181 ITQGATYLQMRTVGELHLRTRATAQ 205 QGA +L +RT G +R+RA + Sbjct: 176 RAQGAAFLMLRTDG--GVRSRAAGE 198 >UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Rhizobiales RepID=B8ESY7_METSB Length = 335 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 47/354 (13%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + + DGFD+GVGML + ND RR M+ +IAP WDGN+ WL+ LF +P+VY+ Sbjct: 16 YVLLDGFDLGVGMLLALM-PNDRGRRHMLAAIAPVWDGNETWLVVTATILFGVFPLVYSI 74 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 S FY+ + ++LA L R V F++R K R WD +GS V + G+ G L Sbjct: 75 LLSAFYLPVFVMLAGLILRGVSFEFREK--SPHHRAFWDSCFILGSLVASFIQGMMIGAL 132 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGV-VSVGMIITQGATYLQMRTVGELHLRT 200 ++G+P Y G F L+ F LL G + VG + GA +L +T Sbjct: 133 VEGLPVENGRY-----AGGPFGWLSSFALLCGAGLCVGYALL-GAGWLTRKT-------- 178 Query: 201 RATAQVAALV-TLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNF 259 T V AL ++ LAGV I +V +D A + + Sbjct: 179 --TQDVQALAFGILPSLLAGVLAFLAII-FVYSLLLDL----------------AVMHRW 219 Query: 260 NNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSST 319 P+L+ P +G+ ++ ++ R + F+ + A LT ++ +P+++P Sbjct: 220 RERPVLFVFPLMGIAACVIMAVSIRRRRELLPFLSGASIFAAAFLTLAVSFYPYMIPF-- 277 Query: 320 MMNASLTMWDATSSQLTLNVMTWVA-VVLVPIILLYTAWCYWKMFGRITKEDIE 372 S+T+ +A + + + M W A ++++PI ++YT Y+ G++ D+E Sbjct: 278 ----SVTIAEAAAPRSSQAFMFWGAGLIVLPITIIYTLVVYFVFKGKVI--DLE 325 >UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Thiomonas intermedia K12 RepID=C7HZB4_THIIN Length = 341 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 166/366 (45%), Gaps = 39/366 (10%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + VL +W+L++G+ ++ + V DGFD+GVG+L+ F+G + R++M+ S+ WD N+ W Sbjct: 10 HHVLATVWFLIIGLFMVFYVVLDGFDLGVGVLSLFVG--ERRRKVMMASLGSIWDANETW 67 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ GG LF A+P+ Y G Y+ +IL+L R V F++ E + + W Sbjct: 68 LVVIGGTLFGAFPLAYGTVLHGLYIPIILMLLGFMLRGVSFEFH---ELSERKAFWGAMF 124 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 +GS + + G A G LL GV + + Y G+ ++ L+PF ++ + V Sbjct: 125 GLGSLLATIAQGFALGGLLNGV-----KVVNGVYVGSVWEWLSPFSVIVVLGVVAGYAML 179 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 G+TYL ++T ++ Q+ A + L A+ VW P Sbjct: 180 GSTYLIIKTKDDIQAGCYQRGQLLAWIMLAVGAVVTVW--------------------TP 219 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 L + WL N +PAL ++ ++ + + FV++ L Sbjct: 220 LQFPQIFA--RWL-TIPNIYFFAVLPALALLSFVMLLRALKRQAEVAPFVWTMLIFLFSF 276 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 +P+++P SLT+ A S TL M +L+P+++ Y + Y Sbjct: 277 AGLAATWYPYIVP------GSLTIDQAASDSGTLVFMLIGIGMLIPVMITYNVYQYIVFR 330 Query: 364 GRITKE 369 G+I + Sbjct: 331 GKIDPD 336 >UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2 n=16 Tax=Bacteria RepID=Q03D44_LACC3 Length = 829 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 5/171 (2%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ I+ ++ L+ F V DG D G GM T F+G + ++R+ ++ P W GN+ W +T Sbjct: 497 LQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGNETWAVT 556 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A +FAA+P Y+A SG+Y + L+L L FR V FDYR++ + WDW +FIG Sbjct: 557 AFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWDWALFIG 616 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSV 177 S +PP ++G+ F + + GVP + + +L PF +L G+++V Sbjct: 617 SLMPPFLLGIIFSSTVSGVPIRNG-----FVYASMGDILTPFSILGGILAV 662 >UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobacteria RepID=B4RAL0_PHEZH Length = 341 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 160/363 (44%), Gaps = 30/363 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++ + ++ + + DGFD+GVG+L F G + ER M++S+AP WDGN+ WL+ Sbjct: 5 LPLIWAGIIAIAVLMYVLLDGFDLGVGILFPFAG-SPAERDTMMDSVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFAA+P Y A Y+ ++++L +L R V F++R + + W G Sbjct: 64 GGGGLFAAFPAAYGALMPALYIPILIMLMALILRGVAFEFRLRGRRRG-KRFWTAAFAGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S L G G +QGV ++ G F L P+ LL + GAT Sbjct: 123 SIAATLAQGFVLGGFIQGVTLREGQF-----AGGAFDWLTPYTLLVAAGLLAGYALLGAT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +T ELH R R A ++ T A+ V + + H + Sbjct: 178 WLIWKTEDELHGRARRWAWLSTAATAALLAVVS-----------VATLLVH---PRIAER 223 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 ++ G +N L AIP +G+ ++ R F+ + L Sbjct: 224 WGFQDGG---INTGEILPLLAIPLVGLAGLIMVAAGLRRRSHGLPFLGAFAIFLSGYLGL 280 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + FP ++P +T A S+ L +M +L+P IL YTAW YW G++ Sbjct: 281 AVGFFPNIVPY------DMTFRQAASADNALGLMLVGVAILLPFILGYTAWVYWVFRGKV 334 Query: 367 TKE 369 + + Sbjct: 335 SAD 337 >UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMS2_SYNFM Length = 343 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 169/368 (45%), Gaps = 50/368 (13%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 IW ++G L+ +A++DG D+GVG+L+ ++ ER +++ SI W NQ WL+ GG Sbjct: 11 IWLAIIGFFLLYYAISDGADLGVGILS-LAATDERERGLIMGSIGSIWHDNQTWLVLLGG 69 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 LF A+P+ Y S YV ++ ++ L FR V F++R E +R +W +GS + Sbjct: 70 MLFGAFPLFYGVLLSALYVPILCMIFGLVFRGVSFEFR---ENSRHPAVWSRCFGVGSLI 126 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 L G F +V E + + G+ NPF L + + + G+ +L Sbjct: 127 VTLSQG--FALGGLLGGLDVREGV---FKGSVLGWANPFSCLVALGVLCGYVMLGSNFLV 181 Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 +T G + R+ T+ A+L+TL GI V T Y ++V Sbjct: 182 FKTAGPIQARSYRTSFAASLMTL------------GISILVHLFTAAKY-------PQMV 222 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 R+ L + P L ++ ++ R + LA ++ AGI Sbjct: 223 RK----LTTLPEAYYIAVFPVLAAFCFVMLFVSLRRKR----------ELAPLLCNAGII 268 Query: 310 MFPFVMPSSTM--------MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 +F F+ S M +++++T+ A +S+ TL M V VL+P+IL+YT + + Sbjct: 269 LFSFIGLSLGMYPDMIPNVVSSAVTVHAAAASKDTLEFMLQVTSVLLPVILVYTGYKHRI 328 Query: 362 MFGRITKE 369 G++T E Sbjct: 329 FQGKVTTE 336 >UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3F0_STRRD Length = 332 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/346 (28%), Positives = 156/346 (45%), Gaps = 34/346 (9%) Query: 21 GFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA 80 G+ V GFD G +L GR++ RR ++ ++ P++ GN+VWL+ A G LF A+P++ Sbjct: 15 GYYVLAGFDYGAQLLLPLAGRDEGGRRRVLAALGPYFFGNEVWLVAAAGVLFGAFPLLEG 74 Query: 81 AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGN 140 SG Y+ ++L+L L R + + R +WD I G +P ++G G Sbjct: 75 TLLSGLYLLVVLLLLGLVAGKAAVQLRGRSQSAAARRVWDVLIVAGGAIPAFLMGTLIGL 134 Query: 141 LLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRT 200 LL GVP D L + +L+PF LLAGV V ++I G +L +RT GE+ R Sbjct: 135 LLAGVPLRGDHGFVL----SPGDVLHPFVLLAGVTGVLLLIGHGGAFLSLRTTGEVASRA 190 Query: 201 RATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFN 260 + A+ A W + NPL Sbjct: 191 DSAARSAL-----------TWAAAAVVVTFAAGLALGVRPPNPL---------------- 223 Query: 261 NTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM 320 + A L VLPL R + AF ++ +A + AG++ FP+++ SS Sbjct: 224 ---VATAATVLLAVLPLAGRRALRYGRPGRAFTATAAAVALPVPLAGLSTFPYMLVSSAD 280 Query: 321 MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 SLT + + TL +T VVL+P++L Y A+ +W GR+ Sbjct: 281 PRHSLTFTEVAADAATLETLTAFGVVLLPVMLGYQAFGWWAFRGRV 326 >UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZB4_POLSQ Length = 328 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 168/359 (46%), Gaps = 48/359 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + IW L+ +++ + + DG+D+GVG+L + R+D ER M++S+ WD N+ WL+ Sbjct: 5 ITLIWGGLLAFVVLAYIIFDGYDLGVGILIPLM-RSDQERAQMLSSVR-LWDANETWLVL 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRN-----MWDW 121 GG LFA +P+ Y+ F Y+ +I +L SL R V + E RW+N +WD Sbjct: 63 GGGGLFAVFPLAYSIIFPALYLPLIGMLLSLVIRGV-------VSEFRWQNKQSAMIWDS 115 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 F+GSF+ G+ G L+QG+ VD Y G L PF ++ G+ Sbjct: 116 LFFVGSFLAACFQGMILGALVQGIQV-VDH----AYAGGPLDWLTPFSVMTGIALALGYS 170 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GAT+L ++T GEL + + +V + ++ + +W + Sbjct: 171 LLGATWLVLKTDGELQNKAFSLIKVLGSLMVLMVGVVSLWTPF----------------- 213 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 L ++ + AW P+ + A + L + R + S L+ Sbjct: 214 --LKQDYLSRWFAWPQAIYVLPVPLLLAA--AIFILFRAVNRRNTWVPFVATISIFLLSY 269 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 I L I++FP+V+P ++T+W+A + + + ++LVPIIL+YT + +W Sbjct: 270 IGLL--ISIFPYVVPD------TITLWEAAAPLSSQKFLLPGTLILVPIILIYTTYAHW 320 >UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=Proteobacteria RepID=A8GFS1_SERP5 Length = 335 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 13/196 (6%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++++ + + V DGFD+G+G+L ++ ++ +R +M+N++AP WDGN+ WL+ Sbjct: 5 LPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWV-KDSGDRDVMMNTVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G ALF A+P+ YA + + L+L L FR V F++R K + R++WD G Sbjct: 64 GGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFKATAEK-RHIWDKAFIWG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ--- 183 S GV G +++G P N Y G L PF L G +G+++T Sbjct: 123 SVFATFSQGVVVGAIIKGFPVNGRT-----YAGGALDWLTPFALFCG---LGLVVTYALL 174 Query: 184 GATYLQMRTVGELHLR 199 G T+L M+T G+L R Sbjct: 175 GCTWLVMKTAGDLQAR 190 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 6/64 (9%) Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 GI+++P ++P S +T+W A + +L M A+ ++PIIL+YT W Y+ G++ Sbjct: 275 GISIWPLLIPPS------ITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWSYYVFRGKV 328 Query: 367 TKED 370 + E Sbjct: 329 SHEQ 332 >UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SP33_HAHCH Length = 331 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/361 (25%), Positives = 158/361 (43%), Gaps = 37/361 (10%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 I+ LL+ V ++ + + DGF +GVG+L+ +L + D +R I I S++ WD NQ WL+ G Sbjct: 6 IYLLLIAVGVLMYVLLDGFSLGVGILSPWLSKAD-DRAIAIKSLSHLWDSNQTWLVFGGV 64 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 LFA +P YA S Y+ +IL+L +L FR V F++ K + R WD+ GS + Sbjct: 65 VLFAGFPKAYATVLSQLYLPIILMLIALIFRGVAFEFYFKSHTS--RGWWDFSFSFGSTL 122 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 L G+ G+L+QG ++ + PF L+ V V G+ +L Sbjct: 123 ATLSQGIVLGSLVQGFSLEPQPSEQIAW-------FTPFSLMTAVALVCGYALLGSCWLV 175 Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 ++ G L + R ++ + AL VW++ +V Sbjct: 176 RKSSGRLQVSVRRLGIISLFAVMFFLALVSVWMLLA-------------------QPQVF 216 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 + W P+ +G+ L + D + LA I L AG Sbjct: 217 QRWLTWPTGLLLAPVPLLSAYVGLRLWQMLRSGEGNDLKPLGLAMALFGLAFIGLAAG-- 274 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 MFP+++P LT+W+A + + + + V+ +PI++ Y + Y G+ + Sbjct: 275 MFPYIIP------GQLTIWEAIAPERSTSFTLIGIVLFLPIVIAYNIYNYRVFSGKTNTQ 328 Query: 370 D 370 D Sbjct: 329 D 329 >UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 Tax=Bacteria RepID=B2RJL6_PORG3 Length = 387 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 106/401 (26%), Positives = 187/401 (46%), Gaps = 42/401 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++Y +L+ WW LV +L G L LG+++ +++M+NS W+ Sbjct: 1 MEYALLQHYWWFLVSLLGALLVFLLFVQGGQSFLFS-LGKDELTQKMMVNSTGRKWEFTF 59 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 L+T GGALFA++P+ Y+ +F G Y +L+L + V ++Y+SK R + Sbjct: 60 TTLVTFGGALFASFPLFYSTSFGGAYWVWMLILFCFIIQAVSYEYQSKHGNVWGRKTYQI 119 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTG-----NFFQLLNPFGL--LAGV 174 +FI + PL++G A G F V++ +G + +Q N + L L V Sbjct: 120 LLFINGVLAPLLLGTAVSTFFTGSSFVVNKMAMFDLSGGNQIVSAWQPFNGWQLRGLEAV 179 Query: 175 VSVGMIITQGATYLQMRTVGELHL-------------RTRATAQVAALVTLVCFALAGVW 221 +++ ++ A + R L+ + R A AA + F LA + Sbjct: 180 LNLWNVVLGLAVFFLARVSALLYFINNIDDESLYAAAKRRLWANTAA---FLIFFLAYIA 236 Query: 222 VMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPL---- 277 + +G+ V NP++KEV E +L NF + P + A+ LGV+L L Sbjct: 237 FLLTTEGFAV----------NPVSKEVYMEPYKYLYNFLDMPAVLAVFLLGVILVLGGIG 286 Query: 278 LTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTL 337 LT+L + W ++ +L PS+ + +SLT+ +A+SS TL Sbjct: 287 LTLLRKGFKRGIWLHGTGTVLTVLALLLVAGWNDTSWYPSTYDLQSSLTIENASSSHFTL 346 Query: 338 NVMTWVAVVLVPIILLYTAWCYWKMFG--RITKEDIERNTH 376 VM++V+ +L+P +L Y + W+ +ITK+++E++ H Sbjct: 347 KVMSYVS-ILIPFVLAYIFYA-WRALDIRKITKKEMEQDDH 385 >UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=D0L0A7_HALNC Length = 348 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 45/371 (12%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 Y+ L FIWW+L+G+ ++ + + DG D+G G+ + F + ER ++ S+A WD N+ W Sbjct: 11 YQWLTFIWWVLIGLFVVLYIILDGADLGSGIYSLF-NSDSEERGAIMASMAGTWDANETW 69 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ AGGA+F +P+ Y + F + +++VL + R V ++ R R +WDWG Sbjct: 70 LVVAGGAIFGTFPLAYGSLFHYLMIPLMVVLWGIIIRAVSLEFHHY--SKRSRALWDWGF 127 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 IGS V GV G LQG + + G L PF +L G +V Sbjct: 128 GIGSLVTTFGAGVCLGAFLQGFQMTTGQVPT--FGGGALDFLTPFSILTGFTAVIAASLA 185 Query: 184 GATYLQMR--TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G YL+ R E++ + + + LV + VW Sbjct: 186 GGAYLRARFDRSTEIYAKALKWTDLMFYLALVAIMITVVWTFIQF--------------- 230 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 +W + P WA G ++ L + R + + + LA Sbjct: 231 ------------SWARDKWIGPYWWAYVIAGAIV-LFATWSMRKASREQRDITAMIWLAS 277 Query: 302 IIL----TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 I+ T ++P+ +P ++T++DA + +L+ ++ + VP++L Y + Sbjct: 278 IVFINFATMMATLYPWFVP------GTMTIYDAANPSNSLSAFSYAMLGFVPVMLSYNFY 331 Query: 358 CYWKMFGRITK 368 W R+ K Sbjct: 332 QAWVFRARLHK 342 >UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Cyanobacteria RepID=Q2JM63_SYNJB Length = 349 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 97/350 (27%), Positives = 171/350 (48%), Gaps = 37/350 (10%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + + DGFD+GVG+L+ ++T R I++ S+ WD N+ WL+ GG+LF ++P+ YA Sbjct: 26 YVLLDGFDLGVGILS-LTASSETRRSILMTSLGNVWDANETWLVLMGGSLFGSFPLAYAT 84 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 + Y+ +++++ L R V F++R E + +W+ +GSF+ L G A G++ Sbjct: 85 ILNALYIPLVIMVVGLILRAVSFEFR---ENADNKLVWNLAFGVGSFLAALGQGFALGSV 141 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTR 201 +G+ VDE ++ G+ + L LL + + + G+ YL ++T GEL Sbjct: 142 FEGI--RVDE--AGHFAGSPWDWLTWRTLLVALTLIQGYVLIGSAYLIVKTTGELQETYY 197 Query: 202 ATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNN 261 TA +A TL L V++ S P+ E +A A L + Sbjct: 198 KTATIATWTTL----LGAVFI----------------TISTPIMSE---QARAQLFSPPL 234 Query: 262 TPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMM 321 I AIP LG++L L + + R + V++ L A + G +FP ++P Sbjct: 235 FYIFAAIPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGLGFMVFPNIIPP---- 290 Query: 322 NASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDI 371 S+T+++A +S +L M L+P+IL Y + Y G+I +++ Sbjct: 291 --SVTIYEAAASPSSLVFMLTFIGFLIPVILSYNIYNYVVFRGKIVVQEV 338 >UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7C6_9DELT Length = 337 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 166/369 (44%), Gaps = 45/369 (12%) Query: 11 WWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 W+ ++ +LL + TDG+D+G G+L + R IM SI W NQ WL+ GG Sbjct: 11 WFGILALLLWLYVFTDGYDLGAGILC-LHEADPVHREIMAESIDGVWHANQTWLVLLGGV 69 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNMWDWGIFIGSFV 129 LF A+P+VY + Y+ +L ++ R +G +YR K + + W ++ W GS Sbjct: 70 LFGAFPLVYGTVLAALYLPAGFLLFAIMARGIGLEYRMKADNKLPWSRLFGW----GSVA 125 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 L G G +LQG+ F+ L++ G F +PF +L + + GA +L Sbjct: 126 VTLAHGFLLGGVLQGMDFD-----GLHHAGGAFDWFSPFTILVAATFLCLYAFLGAAWLV 180 Query: 190 MRTVGELHLRTRA-TAQVAALVTLVCFALAGVWVMYGIDGYVV-KSTMDHYAASNPLNKE 247 +T G L ++R + + A + LAG + G G++V + A L+ Sbjct: 181 WKTEGPLQHQSRIWSVRYGAATVGMLVLLAGYIALDGRLGFLVGRPGQGGLGAFFILSLV 240 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 V A+ + +I G VLPL V+ +L L + + G Sbjct: 241 VAVFCAAFSIR--------SIGKGGEVLPL---------------VWCALMLVAVFVAFG 277 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 +++P ++P LT+ A + L L +M W ++P+I LY A+ + + G++ Sbjct: 278 GSLYPLIVPP------RLTIEQAAAPPLMLKIMLWTVGSMLPVIFLYNAYHFRLVRGKVR 331 Query: 368 KEDIERNTH 376 ED TH Sbjct: 332 LED---ETH 337 >UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=16 Tax=Francisella RepID=A0Q8B4_FRATN Length = 320 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 98/370 (26%), Positives = 170/370 (45%), Gaps = 57/370 (15%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++ L+ + + DGF +G+G+L L +D ++ I + + P WDGNQ WL+ Sbjct: 3 LGLIWLAIIAFALLLYVILDGFALGMGILFPLL--DDHQKDIATSILLPTWDGNQTWLVF 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A + +P+ +A F Y++ IL++ + R + F++R K + +N WD FI Sbjct: 61 ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLKSSQKGIKN-WDKLFFIS 119 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SFV + G G L+ G P N +F+ F + G+ + GAT Sbjct: 120 SFVATFLQGYIVGELIVGFPHN-----------SFYNF--GFSAVTGITLIFGYSLLGAT 166 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 L ++T GEL + + A++ ++ V + G G+ VK +D+ L + Sbjct: 167 RLILKTEGELFTKAKQLAKICCIILAVLMLVIG-----GMTPLYVKLPLDNLYKMAILGE 221 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + ++LV ++ I A LP W L++A ILT Sbjct: 222 LFLLTIISFLV------LIKVIEAKNHALP------------YW------LSVAIFILTY 257 Query: 307 GIAM----FPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 I+M FP+++P +T A +S TL A++++P++LLYT++ Y+ Sbjct: 258 -ISMLTLIFPYIIPY------QITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIF 310 Query: 363 FGRITKEDIE 372 G+ TKE + Sbjct: 311 RGK-TKEKLS 319 >UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=root RepID=B2IDR4_BEII9 Length = 337 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 152/346 (43%), Gaps = 39/346 (11%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + + DGFD+G+G+L F R++T R M++S+AP WDGN+ WL+ GG L AA+P+ Y+ Sbjct: 23 YVILDGFDLGLGILF-FTTRDETARDDMMSSVAPFWDGNETWLVLGGGGLLAAFPLAYSI 81 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 Y+ +IL+L +L R V F++R + W WD GS + L G G L Sbjct: 82 IMPALYIPIILMLLALILRGVAFEFRWAAKP--WHGFWDVAFAGGSTLAALAQGFVLGGL 139 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTR 201 +QG+ + + G F +PF LL G V +L M+T G L R Sbjct: 140 IQGITVKDNA-----FAGGPFDWFSPFALLCGFGLVAGYGLLACCWLLMKTSGGLAAHAR 194 Query: 202 ATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNN 261 A L + C A+ +W PL + E W N Sbjct: 195 RLALPFLLAVVFCAAVVSIW--------------------TPLRYPAIAE--RWFST-PN 231 Query: 262 TPILWAIPALGVVLPLLTILTARM-DKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM 320 LW +PA L L R D F + L C A I+ +P+++P Sbjct: 232 IFYLWPLPAATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGLA-ISAYPYLVPH--- 287 Query: 321 MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 S+ +W A + +L M +L+P+IL YT + YW GR+ Sbjct: 288 ---SIDLWQAAGAPESLKFMLIGVSILLPVILGYTIFVYWTFRGRL 330 >UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I116_CAMHC Length = 368 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 176/389 (45%), Gaps = 42/389 (10%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 YE L+ WW ++ LL G V F G G + F +++ + +++NSI W+ Sbjct: 2 YENLQIYWWFIIS-LLAGIFVFMSFVQG-GQMLLFSFKDEKNKDMIVNSIGKKWELTFTT 59 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ GGA FAA+P+ Y+ +F G Y + +L + V ++YR K + ++ + Sbjct: 60 LVMFGGACFAAFPLFYSTSFGGAYWVWMAILFCFIIQAVSYEYRKKENNFLGQKCYEIFM 119 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF----------QLLNPFGLLAG 173 I F+ +IGVA G F++D T NF L NPF L G Sbjct: 120 LINGFLGIFLIGVALSTFFSGSEFSLD-------TRNFVAWKNPLRGLEALFNPFNFLLG 172 Query: 174 VVSVGMIITQGATYLQMRTVGELHLRT--RATAQVAALVTLVCFALAGVWVMYGIDGYVV 231 V G+ YL + + E ++R R + A V ++ F VW+ DG+ V Sbjct: 173 FTLVFAARVGGSMYL-INHINEDYMRKKIRNFLKKDAAVFVIFFIAFLVWISLK-DGFCV 230 Query: 232 KSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWA 291 + N VV + +++NF N ++ + V+ L I K+ Sbjct: 231 E------------NGVVVTKKFHYILNFFNHYFIFFGLIISVLTALFGIYKGAFTKSIQG 278 Query: 292 FVF--SSLTLACIILTAGIAMFPFVM-PSSTMMNASLTMWDATSSQLTLNVMTWVAVVLV 348 F + A L + M V PSS +N+SL++++A+SS TL M +++ V + Sbjct: 279 IWFWGIGVIFAVTFLFFSLGMSGNVFYPSSADLNSSLSIYNASSSFYTLKTMAYIS-VFI 337 Query: 349 PIILLYTAWCYWKMFG--RITKEDIERNT 375 P +L Y A+ WK +++K+++E++ Sbjct: 338 PFVLAYIAYV-WKNMDKTKMSKKELEKSN 365 >UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Halobacteriaceae RepID=D2S1W8_9EURY Length = 333 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 100/199 (50%), Gaps = 19/199 (9%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT-ERRIMINSIAPHWDGNQVWLITAG 68 IW+ LV +L F DGFD GVG+L F R+D ER ++ +I P WDGN+VWL+ G Sbjct: 20 IWFGLVFFILGMFLFLDGFDFGVGIL--FATRDDKHEREQLLAAITPFWDGNEVWLVVFG 77 Query: 69 GALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSF 128 GALFAA+P VYA FS Y+ M +L +L R + + + E+ W+ W +GSF Sbjct: 78 GALFAAFPAVYANLFSRHYLLMFAILGALILRGLAPEMYEQREDEPWQKWWGRAFIVGSF 137 Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYL 188 P +G+ N L G L+ G++ G++ V + + G +L Sbjct: 138 TAPFFLGIFIANWLLGTT----------------ALITLPGIVVGLMLVALTVVDGVAFL 181 Query: 189 QMRTVGELHLRTRATAQVA 207 +++T EL R A Sbjct: 182 RLKTRNELRDDVRTDGSRA 200 >UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Burkholderia RepID=B2JUZ0_BURP8 Length = 329 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 20/207 (9%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + +L ++W+ L+G++L + VTDGFD+GVG+L+ R +R +M+ SI WD N+ W Sbjct: 6 HSLLAYVWFGLLGLMLAFYVVTDGFDLGVGILSLLRARR-ADRDVMVESIGHVWDANETW 64 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ GG LF A+P+ YA Y ++ ++A L R ++R +E +WD Sbjct: 65 LVVLGGGLFGAFPLAYAQLMQDLYSPVMALIAGLIMRGAAIEFRHSVEHG---PLWDKVF 121 Query: 124 FIGSFVPPLVIGVAFGNLLQG-VPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 IGS + L GV G ++ G VP ++ N F ++ G++AG + Sbjct: 122 GIGSLIAALAQGVVLGKVITGLVPGEMN---------NVFVIVAATGVVAGYALL----- 167 Query: 183 QGATYLQMRTVGELHLRTRATAQVAAL 209 GATYL +TVG + +R A ++A+ Sbjct: 168 -GATYLVKKTVGMIEQWSRRLALLSAM 193 >UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V528_9AQUI Length = 242 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 31/264 (11%) Query: 107 RSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLN 166 +K E W+ WD ++G+ VP L+ GVA GN + G+P +DE + Y G F QLLN Sbjct: 4 ETKKESKTWKAAWDIAYWVGNTVPALLFGVAVGNAVLGIP--IDE--KGVYHGTFIQLLN 59 Query: 167 PFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGI 226 P +L G VS+ M + G YL ++T G+ + A V + + LA +++ Sbjct: 60 PTAVLMGFVSLFMYLMHGTAYLLIKTEGKPFEFAKKGAVVGFIGFVASLILADFFII--- 116 Query: 227 DGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMD 286 +K T+ +NF + P+ W P L ++ +L +D Sbjct: 117 ---AIKPTL--------------------FLNFFDYPLFWIAPFLMILGLVLYFKYLVVD 153 Query: 287 KAAWAFVFSS-LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAV 345 + ++ S LT+ +LT +A +P + SS +LT+W++ SS LTL +M + Sbjct: 154 EKYNKVIYGSILTILGTVLTIALASYPVFIHSSIDEKYNLTIWNSASSDLTLTIMLISTL 213 Query: 346 VLVPIILLYTAWCYWKMFGRITKE 369 + +P+I+ YT + Y G+++ E Sbjct: 214 IFLPLIIGYTVYVYRVFKGKVSAE 237 >UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DN93_9ACTO Length = 338 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 146/346 (42%), Gaps = 38/346 (10%) Query: 24 VTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAF 83 V G D G +L +LG +++ RR + ++ P + GN+VWL+ G LF A+P + Sbjct: 20 VLGGLDYGAQVLRLWLGGDESARRSTLGALGPFFFGNEVWLVGFAGVLFGAFPFLEGKLL 79 Query: 84 SGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQ 143 SG Y + +L L R + + R R +WD F G VP G+ LL+ Sbjct: 80 SGMYPLFLAILIGLVVGKTAVQLRGRADTVRGRRVWDVLAFAGGLVPAWSWGMLVALLLR 139 Query: 144 GVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRAT 203 GVP D + L TG QL PF L G S + +T GA +L R G RA Sbjct: 140 GVPIGADGHFTL--TGA--QLGEPFVLACGAASTALFVTHGAAFLAARVRGAAAGAARAL 195 Query: 204 AQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTP 263 +VT+V G G V S +D F Sbjct: 196 LPRLGVVTVVA--------SLGAGGIGVASAVDD--------------------GFAAPA 227 Query: 264 ILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA---GIAMFPFVMPSSTM 320 A+ AL LP+ + + WA + T ++ A G+A +P ++ S+ Sbjct: 228 AAVAVGAL---LPIAVVAAMVASRRGWAKTAVTATGVAALVPALLPGVAHYPRLLVSTVS 284 Query: 321 MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 S+T+ A + TL +++ +V+VP+ILLY W +W R+ Sbjct: 285 ERYSVTVSHAAADVETLKLLSAFGIVVVPVILLYQGWSWWAFRERV 330 >UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJ24_DESMR Length = 336 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 50/368 (13%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 +W+ ++ +LL + TDGFD+GVG+L + +N+ R +MI ++ W NQ WL+ GG Sbjct: 10 VWYWILALLLWLYVFTDGFDLGVGILC-LVEQNEPRRSVMIETVEGVWHANQTWLVMLGG 68 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETR-WRNMWDWGIFIGSF 128 LF A+P+VY + Y+ +L +L R +G +YR + ++ R W ++ WG S Sbjct: 69 VLFGAFPLVYGTVLAALYLPAGFLLFALMTRGMGIEYRPETDDPRFWSQVFGWG----SV 124 Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYL 188 + G+ G +LQG+PF+ L Y G L PF +L V + + A +L Sbjct: 125 AVTVAHGLLLGAILQGMPFD-----GLRYLGGPLDWLAPFPILVAVTLLCLYPMFAAAWL 179 Query: 189 QMRTVGELHLRTR------ATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 ++T GEL R +A VA LV LV GY+ A Sbjct: 180 VLKTEGELQDAARLWGIRFGSAAVACLVLLV--------------GYI--------ALDG 217 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 L V R L +P+ + + V+ L ++ + LA + Sbjct: 218 SLGHLVGRPGQGGL-----SPLFVLLLVVAVLNAALYFRALGKGWEHRPLMYCAAMLAFV 272 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 L G+ +FP ++P + ++ D L VM +V L+P++L Y A+ Y Sbjct: 273 FLAFGLNLFPLIVPPAVTAASAAAPDD------MLRVMLYVIGGLMPVVLFYNAYQYRVF 326 Query: 363 FGRITKED 370 G+ + Sbjct: 327 RGKAVPGE 334 >UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8I8_KINRD Length = 346 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 88/174 (50%), Gaps = 1/174 (0%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 F V +GFD GVG L LGR D ER + ++ P WDGN+VWL+ A G FAA+P YAA Sbjct: 22 FFVLEGFDFGVGFLGPLLGRTDAERGAALRTVGPVWDGNEVWLVAAIGVTFAAFPDWYAA 81 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 SG Y+ MI +L L R V ++R K + W D + S + G G L Sbjct: 82 LLSGLYLPMIALLLLLAVRGVAIEFRGKHDSASWHRRCDAFLATSSLLLAGTWGAVLGAL 141 Query: 142 LQGVPFNV-DEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVG 194 + G+ + E + + +L P+ +L G V + GAT+L +RT G Sbjct: 142 VTGLALDPGGEVHGGGLSRSLAPILGPWAVLGGFAGVLLTTVHGATFLALRTTG 195 >UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNI3_9CAUL Length = 345 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 7/191 (3%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW L+ V ++ + DGFD+G+G+L F ++ ER +M+N+IAP WDGN+ WL+ Sbjct: 5 LQLIWAGLIAVAVLLYVTLDGFDLGIGILFPF-AKSKEERDVMMNTIAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG L AA+P+ Y+ Y+ ++L+LA L R V F++R + R R W G Sbjct: 64 GGGGLLAAFPLAYSVLMPALYLPILLMLAGLILRGVAFEFRFR-ARNRGRKFWTQMFSGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + + G+ G +QGV D + G F P+ LL V G Sbjct: 123 SILTAVAQGLVLGGFIQGVTVREDR-----FAGGPFDWFTPYTLLVAAGLVAGYALLGGA 177 Query: 187 YLQMRTVGELH 197 +L M+T LH Sbjct: 178 WLMMKTKDNLH 188 >UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 Tax=Bacteria RepID=Q1LCN4_RALME Length = 345 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 165/366 (45%), Gaps = 58/366 (15%) Query: 14 LVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFA 73 L+G+ ++ + + DG+D+GVG+L R +D ++ MI SI P WD N+ WL+ G L Sbjct: 23 LMGLSMLIYVILDGYDLGVGVLLR--RADDVDKDTMIASIGPFWDANETWLVLGVGLLLT 80 Query: 74 AWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLV 133 A+PM + + Y+ + L+LA L R V FD+R K + + W++ + GS + Sbjct: 81 AFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPH-KPWWNFAFYAGSLLASFS 139 Query: 134 IGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLN-PFGLLAGVVSVGMIITQGATYLQMRT 192 G+ G LY TG + L N F + G+ V GA++L M+T Sbjct: 140 QGLMLG---------------LYITGFRYDLPNLLFAVAVGLCLVAGYCLLGASWLIMKT 184 Query: 193 VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREA 252 G L LR A+ + +T + A + P+ E + E Sbjct: 185 TGNLQLRAIYWARRSLWLTAIGVAAISI--------------------VTPMVSERIFE- 223 Query: 253 GAWLVNFNNTPILWAIPALGVVL-PLLTILTARM--------DKAAW-AFVFSSLTLACI 302 W + N +L IP L +VL ++ L RM D+ W FV +++ Sbjct: 224 -KWF-SLPNIILLAPIPLLTMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTAVIFLLA 281 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 ++FP+++ + +W A S+ +L V+ AV+++P IL YTA+ Y Sbjct: 282 FNGLAYSLFPYLVVD------RIDIWQAASAPESLMVILIGAVIVLPTILGYTAYAYRVF 335 Query: 363 FGRITK 368 +G+ T Sbjct: 336 WGKATD 341 >UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Natrialba magadii ATCC 43099 RepID=C0G2G6_NATMA Length = 331 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 97/368 (26%), Positives = 155/368 (42%), Gaps = 54/368 (14%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L +W+ LV L + + DGFD G+G+L F ++++R +++ + P W N+VWL Sbjct: 13 ESLPEVWFGLVVFALGVYLLLDGFDFGLGIL--FAEADESDREVLLAAFGPLWKANEVWL 70 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + G LFA +P VYA S Y+ + +L +L R +G R + ++ W WD Sbjct: 71 VLFGTVLFAGFPAVYANILSRHYLLVFAILLALSLRGLGSKLREERDDEEWVRFWDACFV 130 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS P ++GV + + G L L+ GV V + I G Sbjct: 131 AGSIASPFLLGVFVASWVLGEA----------------SALAIAPLVVGVTVVALSIVLG 174 Query: 185 ATYLQMRTVGEL--HLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 A +L ++T GEL H+ R V L ++V Y Sbjct: 175 AAFLGVKTRGELRDHVTRRGRQATGIYVGLFVLTAITLFVQY------------------ 216 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 P V+ A AI VV + T+ A ++ AF+ ++ A Sbjct: 217 PGLHTVLLSAST-----------AAIVVATVVFSIATVFAAFRERYHAAFLGAAGLAAAF 265 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 ++ G ++P + P+ A L++ DA S L LN+ T A + +PII+ Y + Y Sbjct: 266 VVFVGTLLYPAIDPA-----AGLSVRDAVVSPLPLNMTTIFAAIFMPIIVGYFLFLYSLF 320 Query: 363 FGRITKED 370 G T E Sbjct: 321 SGPATPEQ 328 >UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Gammaproteobacteria RepID=C6NVA4_9GAMM Length = 362 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 27/239 (11%) Query: 5 EVLRF------IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWD 58 E+LR WW+L+G+ + + V DG D+G G+ + L N+ +R ++ S+A WD Sbjct: 6 EILRIHSSLGTFWWILLGLFFVIYIVLDGADLGAGVFSLML-ENENDRAAVMASMAGTWD 64 Query: 59 GNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDY--RSKIEETRWR 116 N+ WL+ AGG +F A+P+VY A F+ + ++ L + R V F++ +K + W Sbjct: 65 ANETWLVVAGGVIFGAFPLVYGATFNYLMIPLMFALWGIISRAVAFEFHVHAKGSKAFWG 124 Query: 117 NMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRL------------YYTGNFFQL 164 M+ +GS V GVA G L G P + + +++GN Sbjct: 125 KMFG----LGSLVAAFFAGVALGATLLGFPMSKGNAQGIQVANDPFANTVPHFSGNALSF 180 Query: 165 LNPFGLLAGVVSVGMIITQGATYLQMRTVGE--LHLRTRATAQVAALVTLVCFALAGVW 221 L+PF + G+ +V G YL R + ++ + A A + + LV + VW Sbjct: 181 LSPFSIWTGIAAVIAGGLAGTLYLCARFKQDDPIYQKAYAWATTFSYLALVAVVITLVW 239 >UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MEL0_ENTS8 Length = 340 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 168/369 (45%), Gaps = 55/369 (14%) Query: 13 LLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALF 72 L GVL+ + + DG D+GVG+L F ++ R+ M S+ P WDGN+ WL+ GAL Sbjct: 19 LAAGVLI--YVLLDGADLGVGLLAPF--QSPQARQQMNISLLPVWDGNETWLVLTAGALL 74 Query: 73 AAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPL 132 A +P+ ++ +S Y+ + ++L ++ R V +YR R R ++D GS++ L Sbjct: 75 AMFPVAFSILYSALYLPVYIMLLAMIVRGVAIEYR----HLRPR-LFDALFIAGSWLTSL 129 Query: 133 VIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGV-VSVGMIITQGATYLQMR 191 G G ++G+ N +TG L+PF + + +SVG + GA +L R Sbjct: 130 SQGATMGAWVEGITHNGAT-----FTGGPMDWLSPFSVFCAMALSVGYALL-GACWLIWR 183 Query: 192 TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVRE 251 GEL+ R A AL+T A VW + + Y + + + S PL Sbjct: 184 CEGELNAWARRQAMWLALLTAALLAGLLVWTVQLNETY--RLHLQLWRWSGPLV------ 235 Query: 252 AGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG---I 308 A+G++ L ILT R + F+ ++TL I G + Sbjct: 236 ------------------AVGLLAFLGVILTLRQRR---DFLPLAMTLLLFITAFGGMLL 274 Query: 309 AMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 A+FPF++P +L + A + T +M V VPI L+Y +W +W G+I Sbjct: 275 AVFPFILPP------NLLLIQAAAPPATQKLMLIAFGVFVPITLIYNSWGFWVFRGKIHA 328 Query: 369 EDIERNTHS 377 E HS Sbjct: 329 AR-EEERHS 336 >UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 Tax=delta/epsilon subdivisions RepID=A7ZG70_CAMC1 Length = 374 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 104/383 (27%), Positives = 179/383 (46%), Gaps = 26/383 (6%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L+ WW +V LL G V F G L LG+++ ++ ++INSI W+ L Sbjct: 7 ENLQIYWWFIVS-LLGGLLVFMMFVQGGQSLIFSLGKDELKKDMLINSIGRKWELTFTTL 65 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + GGA FAA+P+ YA +F G Y + +L + V ++YR K + ++ +F Sbjct: 66 VMFGGACFAAFPLFYATSFGGAYWVWLAILFCFIIQAVSYEYRKKPDNFLGARTYEIFLF 125 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF---QLLNPFGLLAGVVSVGMII 181 I + ++IG+A G F ++E+ + + F L NP+ L G+ + Sbjct: 126 INGSLGVILIGMAVSTFFSGSDFVLNEHNFVEWKTPFRGLEALSNPYLYLLGIAMFFLSR 185 Query: 182 TQGATYLQMRTV-GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G YL GE R + ++ L F WV+ T D +A Sbjct: 186 IGGCLYLMNNIADGEFIQNARKQLIINTVLFLPFFLGFLAWVL----------TKDGFAY 235 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAF----VFSS 296 + +N V A + +N PI + +GV+L L+ I K+ V + Sbjct: 236 N--VNGVVSLVAYKYAINLIEMPIAGILLLVGVLLVLVGIFQGAFTKSIRGIFAYGVGVT 293 Query: 297 LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 L + + L G+ F PS + +++SLT+ +A+SS TL VM++V+ +LVP++L Y Sbjct: 294 LAVTALFLITGLNGTAF-YPSFSDLSSSLTIKNASSSHYTLGVMSYVS-LLVPVVLAYI- 350 Query: 357 WCYWKMFG--RITKEDIERNTHS 377 + W+ +IT+++I+ + H+ Sbjct: 351 FIVWRAIDSKKITQDEIKNDHHA 373 >UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038268B Length = 226 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 8/168 (4%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W L+ + + + V DGFD+GVG+L R R M+ S+AP WDGN+ WL+ Sbjct: 15 LPLVWAGLLALAVAMYVVIDGFDLGVGILFT-AARPGNWRDRMMLSVAPIWDGNETWLVL 73 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFA + + YA Y+ +IL+L +L FR V F++R K E R R +WD G Sbjct: 74 GGGGLFAVFSVAYAILLPALYLPLILMLIALIFRGVAFEFRFKAE--RSRAVWDNAFHYG 131 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGV 174 S G+ G +Q F + +G + L PF ++ G+ Sbjct: 132 SLTATFAQGMVLGAFVQ--SFQTEGR---SLSGGTLEWLTPFSVMTGI 174 >UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautiliaceae RepID=B9L7C1_NAUPA Length = 398 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 106/401 (26%), Positives = 185/401 (46%), Gaps = 48/401 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+F WW++V VL G + F G G + +++ E R ++NS+ W+ L+ Sbjct: 15 LQFYWWIIVAVLG-GLFLFMTFVQG-GQTLFHVAKDEIEERGILNSLGRKWELTFTTLVM 72 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGAL+AA+P+ Y+ +F G Y +L+L + + V ++Y ++ + + + ++ Sbjct: 73 FGGALYAAFPLFYSVSFGGAYWVWMLILFAFVLQAVSYEYMNRTGNLIGKGAYKFFLYFN 132 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGV---------VSV 177 V ++IG A G G F D R+ G N GL A + +++ Sbjct: 133 GVVGIVLIGAAVGTFFTGSNFTYDPATRILEWGTAKDGFNLRGLEAAIDFKHGAWFNLAM 192 Query: 178 GMIITQGATYLQMRTVGEL----HLRTRATAQVAALVTLV---CFALAGVWVMYGIDGYV 230 G+++ + R +G L L + A V A + V CF + V ++ + G + Sbjct: 193 GVLV-----FAVARILGALWLINDLDEKDFADVVARLRAVVKRCFVVLLVALVIVLYGLI 247 Query: 231 VKSTMDHYAASNPLNKEVVR-EAGAWLVNFNNTPILWAIPALGVVLPLLTILT------- 282 T+ YA K V AG +L N L A A+ +++ L+ ++ Sbjct: 248 ---TLKGYAYDIHDPKGTVSLVAGKYLQN------LLAFGAIQLIVFLVGVVLFVLGVFQ 298 Query: 283 ---ARMDKAAWAFVFSSLTLACIILT-AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLN 338 K WA ++ + I+ T AG+ F PS + +SLT+ +A+ S+ TL Sbjct: 299 SGFGSSRKGIWAAGLGTVLIGIIVFTLAGLNGTAF-YPSYADLQSSLTIQNASGSKYTLM 357 Query: 339 VMTWVAVVLVPIILLYTAWCYWKMF--GRITKEDIERNTHS 377 VM WV+V VP +L Y + +++M G ITKE+I + H+ Sbjct: 358 VMAWVSVA-VPFVLGYIIYVWYQMKKQGPITKEEILTDDHA 397 >UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q1A5_NITSB Length = 372 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 167/349 (47%), Gaps = 27/349 (7%) Query: 39 LGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLF 98 L N+ ++ +++N++ W+ L+ GGALFAA+P+ YA +F G Y + +L S Sbjct: 40 LAGNEEQKDLIVNALGRKWELTFTTLVLFGGALFAAFPLFYAVSFGGAYGLWMAILFSFI 99 Query: 99 FRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYT 158 + V ++YR K + +++ +F+ V +IGVA +L G F +D+ + + Sbjct: 100 IQAVAYEYRKKPNNFFGQKVYELFLFLNGTVGIFLIGVALASLFTGAAFKLDDMKHMTWL 159 Query: 159 GNFFQLL---NPFGLLAGVVSVGMIITQGATYLQ-MRTVGELHLRTRATAQVAALVTLVC 214 G+ L NPF +L G++ V + Y + EL + + + + LV Sbjct: 160 GSMRGLEALGNPFNILFGLMMVFLARLNANLYFMFILDDPELVEKAKKAIKTDFAIFLVL 219 Query: 215 FALAGVWV--MYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALG 272 F W+ M G+ GY NK V A +L NF P + +G Sbjct: 220 FLAVAGWILSMSGV-GY-------------EQNKFFVV-AHKYLNNFLEMPFVLGAFVVG 264 Query: 273 VVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAM---FPFVMPSSTMMNASLTMWD 329 V L L ++ A + AF FSS + + L+ + + PS + +SLT+ + Sbjct: 265 VGLLLGAVVMA-LKGVKKAFWFSSTAITLVGLSLLLVLGYNHTAYYPSIADIGSSLTIEN 323 Query: 330 ATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR-ITKEDIERNTHS 377 ++ S++TL M++V+ ++VP ++ Y A+ + M + ++++++E + S Sbjct: 324 SSGSRVTLITMSYVS-LMVPFVVGYIAYVWRLMDSKPLSEDEVENDVMS 371 >UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=B4RY64_ALTMD Length = 335 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 153/340 (45%), Gaps = 54/340 (15%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + E+L I+ L+G+ ++ +A+ DG+D+GVG+L R + R MI SI P+WD N+ Sbjct: 5 VSAEMLGNIYVGLLGLSVMLYAILDGYDLGVGVLIP--PRTEAFRDDMIASIGPYWDANE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 WL+ A G L A+P ++ Y+ +L L R V FD+R+K+ + + R WD Sbjct: 63 TWLVLAIGLLLIAFPEAHSEFLQTLYLPATFMLLGLILRGVAFDFRAKVVQVKKRK-WDL 121 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GS + L G G + G LR F LL FG+ A + Sbjct: 122 VFKYGSLLTTLAQGYMLGIYVTG--------LRTDIWAQGFALLAAFGVTAAYAFI---- 169 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G+ +L ++T GEL + A W G+ G + + A+ Sbjct: 170 --GSCWLILKTEGELQQK------------------AYYWARRGL-GVLAVGIIAVSIAN 208 Query: 242 NPLNKEVVREAGAWLVNFNNTP---ILWAIP-ALGVVLPLLTILTARM----DKAAWAFV 293 L+ +V WL + P +L+AIP A +L L +L ++ K W Sbjct: 209 LTLHDDV---RALWL----SAPWGYVLFAIPLASFALLALCGVLLKKLPDANGKGEWLPF 261 Query: 294 FSSLTLACIILTA-GIAMFPFVMPSSTMMNASLTMWDATS 332 F +L + + +A I+ +PF++P ++ +L+ DA S Sbjct: 262 FIALLVFLLCFSAFAISYYPFIIPGQMTVSEALS--DANS 299 >UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Halobacteriaceae RepID=C7NNR2_HALUD Length = 338 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGML--TRFLGRNDTERRIMINSIAPHWDGNQV 62 + L IW+ ++ L + V DGFD G+GML TR +D +R ++ + P WD N+V Sbjct: 15 DSLPEIWFGVIMFALAMYIVLDGFDFGIGMLYATR---EDDHDRETLLAAFGPIWDANEV 71 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WLI G L AA+P VY+ + Y+ + + +L FR VG + R + E+ W+ DW Sbjct: 72 WLIAFGTMLLAAFPDVYSRLLADNYLIALGFVLALLFRGVGPELREQREDESWQRACDWS 131 Query: 123 IFIGSFVPPLVIGVAFGN 140 GS + P + GV G+ Sbjct: 132 FVGGSALAPFLFGVLAGS 149 >UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z1X7_9NEIS Length = 336 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 148/358 (41%), Gaps = 48/358 (13%) Query: 14 LVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFA 73 L+ + L+ + + DG+D+GVG+L + ER MI SI P WD N+ WL+ G L Sbjct: 14 LMAISLLAYVILDGYDLGVGILLPLGAK--AERDTMIASIGPFWDANETWLVLGVGLLLV 71 Query: 74 AWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLV 133 A+P+ + Y+ + L+L L R V FD+R K + + W+ GS + L Sbjct: 72 AFPLAHGIILGELYLPVALMLLGLILRGVAFDFRVKARDPH-QPWWNAAFAAGSLLAALS 130 Query: 134 IGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTV 193 GV G L G + F LLAGV GA +L M+T Sbjct: 131 QGVMLGRYLTGFAPGAAAW--------------GFALLAGVGLAAAYALLGAGWLIMKTR 176 Query: 194 GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAG 253 G L R A+ A +YG V+ ++ + PL + A Sbjct: 177 GALQARAIGWARRA---------------LYGTGLAVLAVSI-----ATPLASSHI--AA 214 Query: 254 AWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPF 313 W V + +L + LL + R+ + A +L T GI + F Sbjct: 215 KWFVLPDFLLLLPLPLGSLALFVLLALSLPRLARRQ-AAGNDTLCWLPFAATVGIVLLSF 273 Query: 314 ------VMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 V P ++ LT+W A SS L+V+ W A V++P I+ YT + Y +G+ Sbjct: 274 WGLAYSVFPD--IVIGRLTIWQAASSPEALSVILWGAAVVLPTIVGYTVYAYRVFWGK 329 >UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=C3DRT5_BACTS Length = 121 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 71/121 (58%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L IW+ L GV+ + + DG+ +G GM+ F+ ++ ER + +I P W GN+VWLI Sbjct: 1 MLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGNEVWLI 60 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGA FAA+P+ YA FS Y + LVL +LF R G ++ K + W+ W I Sbjct: 61 TAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAI 120 Query: 126 G 126 G Sbjct: 121 G 121 >UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Rhodopseudomonas palustris RepID=B3QK51_RHOPT Length = 341 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 152/350 (43%), Gaps = 48/350 (13%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + V DG D+GVG+L F R+ ++R M+ ++ P WDGN+ WL+ G L AA+P+ +A Sbjct: 24 YVVLDGVDLGVGILFPFAPRS-SDRDAMMTTLEPFWDGNETWLVLGGMVLLAAFPLAFAI 82 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 FYV + L+L L R + F++RS + + +W GSF+ GV G Sbjct: 83 LLPAFYVPLCLMLFGLVIRGIAFEFRS--QRGSFEIVWSMTFAAGSFIAAFCEGVVLGAF 140 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTR 201 + G V + G F L F + G+ V GA +L +T G T+ Sbjct: 141 V-GQSITVSNG---AFAGGPFDWLGLFSIATGLGVVAAYGLLGACWLVWKTGGS----TQ 192 Query: 202 ATAQVAALVTLVCFA----LAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLV 257 + L TL+C L VW P K + E W V Sbjct: 193 NFGRELMLPTLLCAGGAILLVSVW--------------------TPFVKPQIAE--RWFV 230 Query: 258 NFNNTPILWAIP-ALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA-GIAMFPFVM 315 + +LW P + VL + IL R + W+ + SL L L G +++P + Sbjct: 231 WPD---MLWLAPLPIIAVLAGIGILLTRWSEREWSPLALSLLLFITSLAGLGASVWPEAI 287 Query: 316 PSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 P +T+W A+S T ++ V++VPIIL Y + YW G+ Sbjct: 288 P------GVMTIWQASSMHRTQVIVAAAIVIIVPIILAYIGYGYWLFRGK 331 >UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase subunit II n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55F87 Length = 329 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTE--RRIMINSIAPHWDGNQVWLITA 67 IWW ++G+LL G+ G+D GVGML L R+ E +R ++ ++ P + N+VWL+ A Sbjct: 4 IWWGVLGLLLGGYFALAGYDYGVGMLLPALARSRDEAGQRRVLGAVGPFFLANEVWLVAA 63 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 G LF A+P + F+G YV ++L+L L RS+ E R W + I G+ Sbjct: 64 VGVLFGAFPHLEGRVFAGAYVLVVLLLLGLVTFTAAVQLRSRHPEGS-RRGWTFAITAGA 122 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 V + G+ GNL++G+P +D + R + L NP+ +L G+ V + QG + Sbjct: 123 LVTAVSWGLFLGNLVRGLP--LDAHGR--PIDDVLALFNPYAVLWGLGFVALFCLQGLVF 178 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGI-DG 228 L +R EL R R + V A+A VW + + DG Sbjct: 179 LAVRGPAELTGRVRRLTRSLLPPVGVFLAIATVWGAFSVTDG 220 >UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV22_9ACTO Length = 317 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 18/190 (9%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 ++++L+G + G+ G+D GVG+L R GR DTERR+++ ++ P + GN+VWL+ G Sbjct: 4 LFYVLLGAVFAGYFALAGYDYGVGVLLRLCGRTDTERRLILGALGPFFLGNEVWLVAGLG 63 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 L AA+P+ A +G Y A+ ++A++ RS+ T R +WD I + + Sbjct: 64 LLLAAFPLAEGALLTGLYPALFPLIAAIVLFTAAVQIRSR--ATFARPLWDLLIVGSAAL 121 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 G +FG +LQG+P P ++ G ++ + GA+ L Sbjct: 122 ISFGWGASFGLVLQGMPVR----------------FGPLPIITGALTTALFTMHGASLLA 165 Query: 190 MRTVGELHLR 199 +RT + R Sbjct: 166 VRTPDPIRGR 175 >UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A755_THECD Length = 248 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 70/132 (53%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + IW L+ L G+ +GFD+GVGML LGR +R +MI +IAP N+VWL+ Sbjct: 1 MELIWLGLLVALPAGYFALEGFDLGVGMLLPVLGRTRRDRDLMIAAIAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G L A+P++ G Y ++++L + R G +R +++ WR +WD I Sbjct: 61 AAGVLIGAFPLLEGKVLFGLYPLVVVMLLAWVLRDAGLWFRRRLDGDAWRTLWDAVIAAA 120 Query: 127 SFVPPLVIGVAF 138 S L G+A Sbjct: 121 SLTLSLCWGMAL 132 >UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BDC9_STRRD Length = 255 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 70/129 (54%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 +W ++ +LLIG+ +G +G GML LGR +R ++ ++AP N+VWL+ G Sbjct: 4 LWTGVLALLLIGYFALEGSGIGAGMLLPALGRTQPDRDRVVAAMAPFVLANEVWLVAVAG 63 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 LF A+P + SG Y ++ +L S R G +R +++ WR WDW I +GS+ Sbjct: 64 VLFGAFPSIEGEVLSGLYPLVVTLLVSWILRDAGLWFRRRLDGHAWRAGWDWMICLGSYG 123 Query: 130 PPLVIGVAF 138 L G+A Sbjct: 124 LALSWGMAL 132 >UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Tax=Prevotella RepID=C9Q1E8_9BACT Length = 408 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 46/396 (11%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++ YE L+ WW LV LL V F G L LG+ + ERR+++NS W+ Sbjct: 28 LMSYEFLQHYWWFLVS-LLGALLVFLMFVQGANTLIFTLGKTENERRLVVNSTGRKWEFT 86 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 L+ GG FA++P+ Y+ +F G Y +++L S + V +++++K+ + Sbjct: 87 FTTLVVFGGGFFASFPLFYSTSFGGAYWLWMIILFSFVIQAVSYEFQNKLGNILGARTFQ 146 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNP---------FGLL 171 + I + P+++G A G F VD+ GN + P GL Sbjct: 147 TFLIINGVLGPVLLGGAVATFFNGSNFIVDK-------GNITTMAQPVISRWANASHGLD 199 Query: 172 AGVVSVGMIITQGATYLQMRTVGELHL---------RTRATAQVA-ALVTLVCFALAGVW 221 A ++ + ++ A + R +G L++ TRA Q+ V + F L+ + Sbjct: 200 A-LLDLWNVVLGVAVFFLARVLGLLYIINNVAHAPVVTRARKQLRLCTVVFLAFFLSFLV 258 Query: 222 VMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLL--- 278 + DGY A +P + + +L N L + +GV L Sbjct: 259 HLLLKDGY----------AYDPQTGIISMQPLKYLHNLTTMWYLAIVLLVGVASLLYGIV 308 Query: 279 -TILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTL 337 T+ A ++ W + + ++L PS+T + +SLT+ +++ S+ TL Sbjct: 309 RTLRDANFNRGIWFGGVGVVLVVLVLLLCAGWNNTAYYPSNTDLQSSLTIANSSGSKFTL 368 Query: 338 NVMTWVAVVLVPIILLYTAWCYWKMFGR--ITKEDI 371 M+ V +L+P +L Y + W+ R +T+E+I Sbjct: 369 TAMS-VVSLLIPFVLAYI-FVAWRAIDRKPLTEEEI 402 >UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Burkholderia pseudomallei 406e RepID=A8EQ33_BURPS Length = 278 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + + DGFD+GVGML F R++ ER MI S++P WD N+ WL+ G L AA+P ++ Sbjct: 20 YVLLDGFDLGVGMLF-FFHRDEAERDRMIASVSPVWDFNETWLVLGGTLLLAAFPGAFSV 78 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 Y ++ +L L FR V F++R + R + +W IGS V GV G Sbjct: 79 VVPAVYFPVLAMLLGLLFRGVAFEFRG-VAGAR-KTVWSRAFAIGSLVATAAQGVVLGMF 136 Query: 142 LQG 144 +QG Sbjct: 137 VQG 139 >UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Halobacterium salinarum RepID=B0R8N6_HALS3 Length = 331 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 24/183 (13%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDT-ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA 80 + V DGFD G+GML + R D ER + + P WD N+VW++ G L AA+P VY+ Sbjct: 31 YIVLDGFDFGIGML--YATRTDEHERETFLAAFGPVWDANEVWIVAFGTMLLAAFPRVYS 88 Query: 81 AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGN 140 + Y+ + + +L FR +G + R + E+ RW+ D+ GS PL++G+ G Sbjct: 89 RLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFVGGSVFAPLLLGMLAGR 148 Query: 141 -LLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLR 199 L G V +L GV V + I GA +L +T L Sbjct: 149 WLFAGATLPV--------------------VLTGVGLVAVSIVTGAAFLAAKTDSGLASE 188 Query: 200 TRA 202 R+ Sbjct: 189 LRS 191 >UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5X6_STRRD Length = 249 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 62/110 (56%) Query: 20 IGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVY 79 +G+ V G D+GVG L +LGR+D ER ++ SI P + GN+VWLI + G L A+P++ Sbjct: 11 VGYFVLAGADLGVGALLPYLGRSDDERGRVLASITPFFLGNEVWLIASAGILVGAFPVLE 70 Query: 80 AAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 SG YV +++L R G R +++ WR D + GS+V Sbjct: 71 GELLSGMYVPFVMLLLGWVVRDAGIWLRGRVDRAGWRGGCDGAVAAGSWV 120 >UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SHW9_XANOP Length = 85 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/62 (54%), Positives = 44/62 (70%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++DY LR IWWLL+GVLL G+AV GFD+GVG L F+ ND ERR++IN++ P W Sbjct: 5 LLDYTTLRVIWWLLLGVLLSGYAVMSGFDLGVGALLPFVANNDAERRLVINTVGPVWRAQ 64 Query: 61 QV 62 V Sbjct: 65 HV 66 >UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 Tax=Bacteria RepID=A6LFA4_PARD8 Length = 383 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 176/391 (45%), Gaps = 30/391 (7%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 Y +L+ WW LV +L F G L +G+ + ++++++NS W+ Sbjct: 5 YILLQHYWWFLVSLLGALLVFLL-FVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFTT 63 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+T GGA FA++P+ Y+ +F G Y +L+L + V ++Y++K + + + Sbjct: 64 LVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVFL 123 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVD-EYLRLYYTGNFFQLLNPF-GLLAGVVSVGMII 181 I P+++G A G F V+ E L NP+ GL A +V + + Sbjct: 124 MINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMPVISTWANPWHGLEAALVFWNLCL 183 Query: 182 TQGATYLQ--------MRTVGELHLRTRATAQ-VAALVTLVCFALAGVWVMYGIDGYVVK 232 +L + + + + ++ Q + + + F L + + +DG+ V Sbjct: 184 GLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGFAV- 242 Query: 233 STMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLL----TILTARMDKA 288 NP EV + + +N PI+ A+ +GVV L TI + K Sbjct: 243 ---------NPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKG 293 Query: 289 AW-AFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVL 347 W A + LT+ ++L AG + PS + +SLT+ ++ SS TL VM++V+ +L Sbjct: 294 IWFAGAGTVLTVLALLLCAGWNNTAY-YPSLADLQSSLTIQNSCSSPFTLKVMSYVS-IL 351 Query: 348 VPIILLYTAWCYWKM-FGRITKEDIERNTHS 377 VP +L Y + + + +I ++++ H+ Sbjct: 352 VPFVLAYIFYAWRALDLHKINSKEMQEGGHT 382 >UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SIK0_9ACTO Length = 335 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 6/185 (3%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + W+ L+G+ + V G+D GVG+L G R + ++ P + GN+VWL+ Sbjct: 1 MELAWYALLGLFFATYLVLGGYDYGVGLLLARRGPAPGNRATL-TALGPFFLGNEVWLVA 59 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G LF A+P + SGFY A++ LA + G RS+ R WD + +G Sbjct: 60 AVGILFGAFPRLEGELLSGFYPAVLAALAGVVLVTAGVQLRSRPASAAARARWDRVVVVG 119 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + L G LLQGVP + D ++ L PF AG+ + ++ GAT Sbjct: 120 CLLAALGWGAVLAGLLQGVPLSADGHVV-----GVGHLATPFVAAAGLALLALVAVHGAT 174 Query: 187 YLQMR 191 +L +R Sbjct: 175 FLTLR 179 >UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8S6_9DELT Length = 344 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 17/220 (7%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGM--LTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 ++WL +GV +I +AVT G D G G+ L R + +R ++ +IAP W+ N +W+I Sbjct: 6 VYWL-IGVAVIAYAVTAGADFGGGLWDLLATGPRRERQRELIAEAIAPIWEVNHIWMIFV 64 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRS-KIEETRWRNMWDWGIFIG 126 LF+ +P +A +V ++LVL + R F +R+ +E R W I Sbjct: 65 VVMLFSVFPHAFAVVSIALHVPILLVLVGIVLRGSAFIFRAYGMEPDERRAQWGRVFAIT 124 Query: 127 SFVPPLVIGVAFGNLLQG---VPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 S P+ +G L G V + ++ +G F +PF L G+ ++ + Sbjct: 125 SAATPIALGAILAALSSGDILVELDAAGAPQV-RSGFFVGWTSPFALAVGLFTLALFTML 183 Query: 184 GATYL--QMRTVGELHL----RTRA---TAQVAALVTLVC 214 ATYL + + GEL L R RA A AL LVC Sbjct: 184 AATYLAREAQVRGELELSIDFRRRAVISEAVAGALAMLVC 223 >UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTP2_9PLAN Length = 341 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 25/210 (11%) Query: 13 LLVGVLLIGFAVT-----DGFDMGVGM--LTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L+VG++L G A T G D G G+ + N+ ER+++ ++I P W+ N +WLI Sbjct: 7 LIVGIVL-GAATTLYLLFGGADFGAGIWEINTAFQSNEKERKLLYHAIGPVWEANHIWLI 65 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRS-KIEETRWRNMWDWGIF 124 LFAA+P+ + A S F + LVL + FR G+ +R+ I+ R + W +F Sbjct: 66 FVLVVLFAAFPLAFQALCSAFIIPAFLVLVGIVFRGAGYVFRAYSIDSGRQQQFWR-TLF 124 Query: 125 IG-SFVPPLVIGVAFGNLLQGVPFNVDEYLRL--YYTGNFF-QLLNPFGLLAGVVSVGMI 180 G S P +G G L G D + Y GN+ + P L +VG+ Sbjct: 125 AGASAAAPFFLGAIAGTLASG-----DSKINAAGVYEGNYLTDWITPMALFTAFFTVGLC 179 Query: 181 ITQGATYL--QMRTVGELHL----RTRATA 204 A +L + GE+ L R RA A Sbjct: 180 CYLAAVFLTREAEHSGEVELTLVWRQRALA 209 >UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CZ56_9RHIZ Length = 251 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L +I+ L+G+ ++ + + DGFD+G+G+L+ +DT++ M+++I P WD N+ WL Sbjct: 8 EWLPYIFAALMGIAILVYVILDGFDLGIGILSPL--ADDTQKDRMVSAIGPFWDANETWL 65 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + A G L A+P+ + + Y + ++L L R V F++R+K+ + W+ F Sbjct: 66 VLAVGLLLVAFPVAHGVILTTLYFPVAVLLIGLILRGVAFEFRAKVSLDA-KPSWNRMFF 124 Query: 125 IGSFVPPLVIGVAFG 139 IGS + L G G Sbjct: 125 IGSLMSALAQGYMLG 139 >UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VWT6_DYAFD Length = 341 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 16/220 (7%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTE--RRIMINSIAPHWDGNQ 61 Y V+ ++W ++ LL+G G D G G++ F + + + R+ + ++I P W+ N Sbjct: 3 YIVITYLWASILLYLLLG-----GADFGAGIIELFTSQKNKQVTRKTLYSAIGPIWEANH 57 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYR---SKIEETRWRNM 118 +WLI A LF +P++Y+ ++ + ++L + R F +R + +++ +++ Sbjct: 58 MWLIIAIVILFVGFPVIYSTMSVNLHIPLTVMLIGIIARGTAFTFRHYDAVVDDM--QHL 115 Query: 119 WDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVG 178 ++ + SF+ PL +G+ G+ + G ++D R + F L+ F + G+ +V Sbjct: 116 YNTIFAVSSFITPLFLGIIAGSAVSG---HIDPSARSFADAYIFSWLHWFAITVGLFTVS 172 Query: 179 MIITQGATYLQMRT-VGELHLRTRATAQVAALVTLVCFAL 217 + + YL T V LR AQ + +VC AL Sbjct: 173 ICGFLASVYLIGETKVEHERLRFAHKAQFFNIAAVVCGAL 212 >UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit II n=1 Tax=Thermobifida fusca YX RepID=Q47RW4_THEFY Length = 304 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 66/124 (53%) Query: 21 GFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA 80 G+ V G D+G+GML + R+ ERR +I IAP++ G++VWL+ G + P+ A Sbjct: 15 GYFVFAGSDIGLGMLLPYAARSPAERRRLIAVIAPYFLGSEVWLVATIGVVAGLVPVWEA 74 Query: 81 AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGN 140 A + + +L+LA+ R G R ++ RWR +WD + GS++ + G Sbjct: 75 AVVTAQWPVFVLLLAAWLGRDAGLWLRGRLPAARWRAVWDGAVAAGSWLLAVAWGFVVAA 134 Query: 141 LLQG 144 LL G Sbjct: 135 LLGG 138 >UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Geobacter RepID=C6DYH0_GEOSM Length = 349 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 86/205 (41%), Gaps = 19/205 (9%) Query: 13 LLVGVLLIGFAVTDGFDMGVGMLTR--FLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 L+ G+L+ +A+ G D G G+ T F R +R + N+I P W+ N VWLI Sbjct: 12 LVAGLLM--YALFGGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIFVIVT 69 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF-IGSFV 129 LF A+P + F ++L L + FR F +R E + +F I S + Sbjct: 70 LFTAFPAGFGNLFIVLMTPLVLALVGINFRGAAFAFRHFGRELKKETPVSARVFEIASVL 129 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTG-----NFFQLLNPFGLLAGVVSVGMIITQG 184 P +G+A G R+ G F LN F LL GVV + + Sbjct: 130 TPFTLGLAVSATAAG---------RIVIAGRMPTEQFSDWLNSFTLLGGVVGMAICAYLA 180 Query: 185 ATYLQMRTVGELHLRTRATAQVAAL 209 Y+ +R GEL R + A L Sbjct: 181 PIYMTVRVTGELREDFRKESLAAGL 205 >UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YQX5_NOCDA Length = 307 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 65/124 (52%) Query: 21 GFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA 80 G+ V G D+G+GML L R +RR ++ +IAP++ ++VWL+ A G L +P + Sbjct: 15 GYLVLAGADIGLGMLMPRLARGPEQRRRVVAAIAPYFLASEVWLVAAVGVLAGLFPALEH 74 Query: 81 AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGN 140 A + + + ++LA R G R++++ RWR + D + GS+ G+ Sbjct: 75 HAVAELWPVLAVLLAGWLVRDAGLWLRARVDGERWRLVCDCALVGGSWALAAAWGLVVAG 134 Query: 141 LLQG 144 LL G Sbjct: 135 LLAG 138 >UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,subunit II n=5 Tax=Bordetella RepID=Q2KVX4_BORA1 Length = 348 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 60/355 (16%) Query: 24 VTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAF 83 V DGFD+GVG+L + ER M++ ++P D N+ W + G +A+P + A Sbjct: 37 VLDGFDIGVGILLQV--APAEERGRMMSLLSPWRDANEFWPLLGIGLFGSAFPFAWGAIM 94 Query: 84 SGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQ 143 Y + L++ + R V F++R + T + W +G + GS + + G+ G + Sbjct: 95 GKLYGPLTLMVLGIVLRSVSFEFRIR-ASTEVKPRWIFGFWAGSLLAAIGQGMVLGRI-- 151 Query: 144 GVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRAT 203 +Y G F L G+ +V GA +L MR GEL R + Sbjct: 152 -----ATDYQSDAGYGW-------FSLFVGLCAVAAYALLGACWLAMRVDGELQRRAASW 199 Query: 204 AQ------VAALVTL-VCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWL 256 A+ A +V + V LA + Y S H A+ AG W+ Sbjct: 200 ARHGIRWTAAGMVAIAVTLGLANAGIFY------KWSNAAHLGAA----------AGVWV 243 Query: 257 VNFNNTPILWAIPALGVVLP--LLTILTARMDKAAW-AFVFSSLTLACIILTAGIAMFPF 313 LG V LL L + D+ AW FV L ++ + FP+ Sbjct: 244 AML-----------LGFVAAEMLLARLPGKADRLAWLPFVLCVLLYLLMLAGLAYSFFPY 292 Query: 314 VMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 ++ +T+WD + + + ++ V+ P++L++ Y +FG+ + Sbjct: 293 LILD------DMTIWDGSGALGSSRLVLAGVVIGGPVVLVFNILAYRSVFGKDRR 341 >UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AUB4_STRRD Length = 337 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 16/193 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT---ERRIMINSIAPHW 57 M ++L + W VGV L +A+ G D G G+ GR+ +RR++ +SI P W Sbjct: 1 MDAAQILLVVMW--VGVTL--YALLAGADFGGGVWDLVAGRSRAGMPQRRLIEHSIGPVW 56 Query: 58 DGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRN 117 + N VWLI L+ +P V+AA S Y+ + L + R F +R E + Sbjct: 57 EANHVWLIFVIVVLWTGFPPVFAAVMSTLYIPLTLAALGIIARGAAFVFRKASTELWQQR 116 Query: 118 MWDWGIFIGSFVPPLVIGVAFGNLLQG-VPFNVDEYLRLYYTGNFFQL-LNPFGLLAGVV 175 ++ S + P +G G + G VP + G+ LNP LL GV+ Sbjct: 117 LFGAAFATSSVLTPFFLGAVAGGIASGRVPPGL-------AAGDLVTSWLNPTSLLGGVL 169 Query: 176 SVGMIITQGATYL 188 +VG+ A YL Sbjct: 170 AVGVCAYLAAVYL 182 >UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB62_THET1 Length = 337 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 4/135 (2%) Query: 14 LVGVL-LIGFAVTDGFDMGVGM--LTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 L+GVL L+ +AV G D G G+ L + + +R+ + N+I P W+ N VWLI Sbjct: 10 LIGVLALMAYAVLAGADFGAGVWDLLAWGPKAKEQRKTISNAIGPVWEANHVWLIFIIVL 69 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRS-KIEETRWRNMWDWGIFIGSFV 129 LF +P ++A +V L L + R F +R+ E +R+ + W S Sbjct: 70 LFTCYPRAFSALSISLFVPFHLALLGIVLRGASFVFRAYAPERSRFASFWGSVFGSASLF 129 Query: 130 PPLVIGVAFGNLLQG 144 P V+G+ G + G Sbjct: 130 TPFVLGMCMGAISAG 144 >UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4U0_9AQUI Length = 98 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + L IW+LL G+ LIG+++TDGFD+G G+L F +++ R +N++ P WDG + Sbjct: 6 FTTLNGIWFLLAGIFLIGYSLTDGFDLGSGILHIF-AKDENTRITYMNAVGPVWDGMKSG 64 Query: 64 LITAGGALFAAWPMVYAAAFSGFYV 88 L+ A F + F FY+ Sbjct: 65 LLLEEYA-FRSLSCCVCCIFQCFYL 88 >UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Gramella forsetii KT0803 RepID=A0LZZ1_GRAFK Length = 341 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 7/203 (3%) Query: 27 GFDMGVGMLTRFLGRNDTE--RRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFS 84 G D G G++ F R + + R + N I P W+ N +WLI L+ A+P + Sbjct: 21 GADFGAGIVELFSSRENKKLNRDTVYNVIGPVWEANHIWLIILIVILWIAFPGYFNIIII 80 Query: 85 GFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF-IGSFVPPLVIGVAFGNLLQ 143 ++ + LVL + R V F +R W +F I S + P+ +G++FG L+ Sbjct: 81 YLHIPLTLVLLGITMRGVAFIFRHYDAVVDKSQDWYNHMFRISSLITPIFLGMSFGALIS 140 Query: 144 GVPFNVDEYLRLYYTGNFFQL-LNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRA 202 G ++Y + F LN F L G+ + +T L T G++ + Sbjct: 141 GKIMVTNDYSETTFPEIFMDPWLNIFTFLTGLFYASLCAFLASTLLIGETTGDIR---KM 197 Query: 203 TAQVAALVTLVCFALAGVWVMYG 225 ++ +A+ T+V + G + YG Sbjct: 198 YSRKSAIFTVVLVVIGGTVLGYG 220 >UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 Tax=Bacteroidetes RepID=C6XT47_PEDHD Length = 339 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 11/179 (6%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTE--RRIMINSIAPHWDGNQ 61 Y V+ F+W ++ +L+G G D G G++ + + R+ M +I P W+ N Sbjct: 3 YVVIVFLWTAILLYILLG-----GADFGAGIIELMTAKTNKAKTRKTMYKAIGPIWEANH 57 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRS-KIEETRWRNMWD 120 +WLI A LF +P +Y ++ ++ +L + R F +R+ + + ++ Sbjct: 58 MWLIIAIVILFVGFPKIYTTISVYLHIPLVCMLLGIIARGTAFVFRNYDAVKDDMQKIYT 117 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 S + P +G+ + + G +D + + F LN F + G+ +V + Sbjct: 118 PIFVYSSLITPFFLGIIAASSVSG---QIDPSANNFLSAYIFSWLNWFSVAVGIFTVSI 173 >UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=A9AX76_HERA2 Length = 336 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 8/138 (5%) Query: 15 VGVL-LIGFAVTDGFDMGVGM--LTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGAL 71 +G+L +I +A+ G D G G+ L + R +R + +++ P W+ N VWLI L Sbjct: 10 IGLLGVITYAILAGADFGGGIWDLLAWGPRRTQQREAIAHAVGPVWEANHVWLIFIIVVL 69 Query: 72 FAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRS---KIEETRWRNMWDWGIFIG-- 126 F +P +AA G + L L + R F +R+ + E+ ++ WG G Sbjct: 70 FTGFPTAFAALSIGLFAPFHLALLGIILRGAAFVFRAYSPQKEQQPSQSSQRWGTIFGAA 129 Query: 127 SFVPPLVIGVAFGNLLQG 144 S + P+++G+ + G Sbjct: 130 SVITPVILGMTLSAVSAG 147 >UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Streptomyces RepID=B5HKZ6_9ACTO Length = 346 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 4/139 (2%) Query: 9 FIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG---RNDTERRIMINSIAPHWDGNQVWLI 65 FI W+LV + + +A G D G G G R R ++ +++AP W+ N VWLI Sbjct: 4 FIAWVLV-LAIAAYACAGGTDYGAGFWDLLAGGAERGKRSRWLIDHAMAPVWEVNNVWLI 62 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 ++ +P ++ FS ++ + L L R GF R + ++ I Sbjct: 63 FILVIMWTGFPTLFQTVFSAMWLPLALAAVGLVLRGAGFALRKPTRRLAQQRIYGAVFAI 122 Query: 126 GSFVPPLVIGVAFGNLLQG 144 S + P G G + G Sbjct: 123 SSLLTPFFFGAVLGGIASG 141 >UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 Tax=Myxococcales RepID=A7H8Z5_ANADF Length = 351 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 15/185 (8%) Query: 41 RNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFR 100 R +R ++ +I P W+ N VWLI LF +P +AA +V ++L+L + R Sbjct: 39 RRKAQRDLVEQAIGPIWEANHVWLILVIVLLFTCFPSAFAAISIALFVPLVLLLFGIVLR 98 Query: 101 PVGFDYRS-KIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL----LQGVPFNVDEYLRL 155 F +R+ E + + W S + P+V+GV G + L G P VD Sbjct: 99 GAAFTFRTYDRPEDKVQVRWGLVFSSSSVLAPVVLGVVVGAIASGRLAGPPEGVDP---- 154 Query: 156 YYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCF 215 L+PF L G+ + + A+YL + GEL R A A V Sbjct: 155 ------LAWLSPFPLSVGLFAAALFAFLAASYLAVEAKGELQEDFRRRAIGAGGVVFGAA 208 Query: 216 ALAGV 220 LAGV Sbjct: 209 VLAGV 213 >UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJB4_CATAD Length = 338 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%) Query: 29 DMGVG---MLTRFLGRN-DTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFS 84 D G G +L R GR+ D ERR++ +++ P W+ N VWLI A F+ +P + Sbjct: 25 DFGAGVWDLLAR--GRHADRERRLIAHALGPVWEANHVWLIFVIVATFSGFPTAFGIIAR 82 Query: 85 GFYVAMILVLASLFFRPVGFDYRSKIEETRWRN-MWDWGIFIGSFVPPLVIGVAFGNLLQ 143 G + + L LA + R + YR+ E + +W + S + P ++GV+ L Sbjct: 83 GLELPLALALAGIVLRGAAYVYRAYGEGAAGPDSLWSRVFAVASSITPFMLGVSGAALAT 142 Query: 144 GVPFNVDEYLRLYYT-GNFFQLLNPFGLLAGVVSVGMIITQGATYL 188 G ++ T G +PF L+AGV +V + A YL Sbjct: 143 G---------KITATSGPLTPFDSPFTLVAGVFAVVVTAFLAAVYL 179 >UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEE2_9BACT Length = 344 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 15 VGVLLIGFAVTDGFDMGVGMLTRFL--GRNDTERRIMINSIAPHWDGNQVWLITAGGALF 72 +G L+ + + G D G G+L GR + ++ ++ ++ P W+ N +WLI LF Sbjct: 9 IGASLLLYVLLGGSDYGAGILELLPAGGRREAQKHVINEAMGPVWEANHIWLILVIVVLF 68 Query: 73 AAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYR 107 +P ++ ++ M+ +L + R F +R Sbjct: 69 VGFPTIFTTLMVALHIPMLALLVGIVVRGTAFTFR 103 >UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit 2- like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDC Length = 424 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 14 LVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMIN---SIAPHWDGNQVWLITAGGA 70 LVG++L + V G D G G GR + RI + S+AP W+ N VWL+ Sbjct: 12 LVGLIL--YVVLAGADFGAGFWQLAAGRGERGSRIREHAHASMAPVWEANHVWLVFILVI 69 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 + +P +A+ S + + + + FR + R+ + R + D + S + Sbjct: 70 AWTCYPEAFASIASTLSIPLFIAAIGIVFRGAAYALRAGTSQRRELRVIDTVFAVSSILT 129 Query: 131 PLVIGVAFGNLLQG 144 P +G G + G Sbjct: 130 PFALGTVIGAIASG 143 >UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 Tax=Frankia RepID=Q2JGE7_FRASC Length = 330 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 18/163 (11%) Query: 17 VLLIGFAVTDGFDMGVG---MLTRFLGRNDTERRIMIN-SIAPHWDGNQVWLITAGGALF 72 V L +A+ G D G G +L R GR+ ++R +I+ S+ P W+ N VWLI A+F Sbjct: 13 VGLTAYALLGGADFGGGVWDLLAR--GRHAGDQRKLISASLGPVWEANHVWLIFIVVAMF 70 Query: 73 AAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG-IF-IGSFVP 130 + +P Y S V + + L + R + YRS + W WG +F + S + Sbjct: 71 SGFPEAYGVIGSSLEVPLSVALVGIVLRGAAYVYRSYGAGGAGPDHW-WGHVFAVSSTIA 129 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAG 173 P +GVA L G + D+ F + +PFGL+ G Sbjct: 130 PFALGVAGAALASG-DLSTDD--------PFAPVRSPFGLVCG 163 >UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TGE2_RICCO Length = 325 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 87 YVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVP 146 Y + +L +L R V +RS+ R + WD + GS + GV G+L+QG+ Sbjct: 2 YPVIFAMLFALILRGVAIGFRSE-ATARAKARWDAVMLTGSTMAAFCQGVLVGSLVQGI- 59 Query: 147 FNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQV 206 R Y G + L F L GV GA++L RT G L R R + Sbjct: 60 ----RTARGTYQGGPWDWLGAFALFCGVALALGYAWLGASWLIWRTEGSLQQRARRASLA 115 Query: 207 AALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 T A+ +W ++ D Y + T D + P+ Sbjct: 116 LGTATAASTAIVSLWTLHLNDYYARRWTDDSGGVALPV 153 >UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A4FDV9_SACEN Length = 340 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 12/196 (6%) Query: 27 GFDMGVGMLTRFLG---RNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAF 83 G D G G+ G R +R ++ +SI P W+ N VWLI + +P +A Sbjct: 23 GADFGGGLWDLLAGGAERGRPQRELIEHSIGPVWEANHVWLIFVITLFWTVFPAAFAPFA 82 Query: 84 SGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQ 143 + Y+ + L + R F +R +E R R ++ S V P +G G + Sbjct: 83 ATLYIPLTLAALGIIARGAAFAFRKVSDEFRQRRLFGAAFAFSSVVTPFFLGTLLGAVAS 142 Query: 144 G-VPFNVDEYLRLYYTGNFFQL-LNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTR 201 G VP ++ +G+ NP + AGV++V A +L E Sbjct: 143 GRVPPDLA-------SGDVLTSWWNPTSVTAGVLAVVTTAYLAAVFLTADARREREPELA 195 Query: 202 ATAQVAALVTLVCFAL 217 + ++ ALV+ V + Sbjct: 196 SAFRLRALVSGVVLGM 211 >UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZA12_PLALI Length = 345 Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 21/196 (10%) Query: 13 LLVGVLLIG---FAVTDGFDMGVGM--LTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 +L G LL+ +A+ G D G G+ + +R+++ I P W+ N VWLI Sbjct: 11 ILYGTLLLALTAYAILGGADFGAGIWEFNTSFRSHRRDRQLLREVIGPVWEANHVWLIFV 70 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYR--SKIEETRWRNMWDWGIFI 125 L++A P V+ ++ ++L LA + R F +R S +E + R + Sbjct: 71 LVILWSAMPRVFQHLCVVMWLPLLLGLAGIVCRGAAFIFRAYSPVENSVTRAS---TVLF 127 Query: 126 G--SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 G S P +G G +L N RL T LNP + +G +V + + Sbjct: 128 GLASTAAPFFLGTVVGGILTREATNP----RLSQTA----WLNPLAIYSGFFAVAVCLYL 179 Query: 184 GATYLQMRTVGELHLR 199 + +L R H R Sbjct: 180 CSVFL-FREASLRHER 194 >UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLF6_9FIRM Length = 305 Score = 40.8 bits (94), Expect = 0.084, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 51/212 (24%) Query: 29 DMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW-LITAG--GALFAA----------W 75 D GV ++ + +N+ ER+ +N + P DGN+ W + AG GALF+ W Sbjct: 26 DFGVAIVAPMVAQNEEERKTALNLLKPGLDGNEAWAFLCAGVTGALFSNGRFNIPESTFW 85 Query: 76 PMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIG 135 P+ MI+ LA+ F W N++ P L+ G Sbjct: 86 PL------GIILTGMIVRLAAAF----------------WGNIFQ--------QPLLLRG 115 Query: 136 VAFGNLLQGVPFNVDEYLRLYYTG-NFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVG 194 V F ++ + V L L + F + FGL+ +S I GA Y +T Sbjct: 116 VRFITIINVISAGV---LALELANWDLFTTKSVFGLIWLFMSC---IQVGAIYGACKTAN 169 Query: 195 ELHLRTRATAQVAALVTLVCF-ALAGVWVMYG 225 L R RAT V +++L+ F A+ G W + G Sbjct: 170 PLGERFRATFLVTNILSLMAFIAVFGAWYVLG 201 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 T... 412 e-113 UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytoch... 354 4e-96 UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 ... 350 5e-95 UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 ... 345 2e-93 UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 ... 331 4e-89 UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Act... 324 3e-87 UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 318 3e-85 UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 310 5e-83 UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 ... 308 3e-82 UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subun... 308 3e-82 UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 299 1e-79 UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 ... 297 4e-79 UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 T... 295 2e-78 UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Ta... 294 4e-78 UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2... 294 5e-78 UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase... 289 8e-77 UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 ... 289 1e-76 UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 288 2e-76 UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 286 1e-75 UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 ... 284 3e-75 UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=... 283 7e-75 UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 T... 283 7e-75 UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireduce... 283 7e-75 UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Ta... 282 9e-75 UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 280 7e-74 UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 280 7e-74 UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 279 1e-73 UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol ox... 279 1e-73 UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 277 3e-73 UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachl... 274 4e-72 UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II... 273 7e-72 UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 271 4e-71 UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 270 8e-71 UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 ... 268 2e-70 UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 267 7e-70 UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 265 2e-69 UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex ... 262 1e-68 UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 262 1e-68 UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 261 4e-68 UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 260 5e-68 UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfo... 260 8e-68 UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitiv... 258 2e-67 UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyani... 258 3e-67 UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 257 6e-67 UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 ... 254 4e-66 UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Bra... 253 8e-66 UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 ... 253 9e-66 UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 252 2e-65 UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 ... 251 3e-65 UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 250 5e-65 UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 250 6e-65 UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 250 7e-65 UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 250 7e-65 UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 249 1e-64 UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 248 2e-64 UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 248 2e-64 UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 248 2e-64 UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 248 3e-64 UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 246 1e-63 UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 T... 244 5e-63 UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 243 6e-63 UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax... 243 7e-63 UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobac... 242 2e-62 UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 240 7e-62 UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 240 7e-62 UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=5... 239 9e-62 UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 ... 239 1e-61 UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitiv... 239 1e-61 UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 239 1e-61 UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 239 2e-61 UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamyd... 237 4e-61 UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 ... 237 4e-61 UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 236 9e-61 UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 233 9e-60 UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 231 3e-59 UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomon... 228 2e-58 UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 228 3e-58 UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 227 7e-58 UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 224 3e-57 UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 224 4e-57 UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 224 5e-57 UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 223 1e-56 UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptospo... 222 1e-56 UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 222 2e-56 UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 221 4e-56 UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 217 6e-55 UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sla... 213 9e-54 UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronoba... 212 1e-53 UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 212 3e-53 UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 210 6e-53 UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit ... 210 7e-53 UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 ... 207 5e-52 UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 207 7e-52 UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit I... 206 1e-51 UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 201 3e-50 UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (Cyd... 200 5e-50 UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 200 7e-50 UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 T... 200 1e-49 UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 T... 195 2e-48 UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 193 1e-47 UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=1... 191 3e-47 UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Ta... 191 4e-47 UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteoba... 190 1e-46 UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 187 9e-46 UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of sub... 185 2e-45 UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 T... 185 2e-45 UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 183 6e-45 UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 183 7e-45 UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 183 8e-45 UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 183 9e-45 UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitrati... 181 5e-44 UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 180 7e-44 UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautili... 177 4e-43 UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidas... 175 2e-42 UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 171 3e-41 UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms Rep... 162 2e-38 UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 159 1e-37 UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquino... 159 2e-37 UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 154 4e-36 UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,... 152 2e-35 UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 148 4e-34 UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 T... 145 3e-33 UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 144 6e-33 UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase sub... 144 6e-33 UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 143 9e-33 UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Strep... 140 6e-32 UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 140 1e-31 UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 137 6e-31 UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 135 4e-30 UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 135 4e-30 UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit ... 134 7e-30 UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptospora... 133 1e-29 UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 132 2e-29 UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 131 3e-29 UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 T... 131 3e-29 UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus... 130 7e-29 UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax... 128 2e-28 UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 127 6e-28 UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 124 7e-27 UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 122 2e-26 UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 121 5e-26 UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 120 8e-26 UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like... 119 1e-25 UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 ... 114 7e-24 UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 109 2e-22 UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit... 107 5e-22 UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 106 1e-21 UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit ... 97 8e-19 UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 82 4e-14 UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 80 2e-13 Sequences not found previously or not previously below threshold: UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Ta... 116 1e-24 UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 104 5e-21 UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Provide... 83 2e-14 UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Ta... 65 5e-09 UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C... 63 2e-08 UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichop... 61 9e-08 UniRef50_UPI000191363F hypothetical protein Salmonellaentericaen... 57 1e-06 UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 51 7e-05 UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1... 51 1e-04 UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 ... 50 2e-04 UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n... 46 0.002 UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea... 44 0.010 UniRef50_A6WFZ9 Copper resistance D domain protein n=1 Tax=Kineo... 42 0.031 UniRef50_O34505 Uncharacterized membrane protein ythB n=12 Tax=B... 42 0.032 UniRef50_D2V2C7 Predicted protein n=1 Tax=Naegleria gruberi RepI... 42 0.035 UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 41 0.066 UniRef50_B5HHN8 Predicted protein n=1 Tax=Streptomyces pristinae... 41 0.085 >UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 Tax=Bacteria RepID=CYDB_ECO57 Length = 379 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 379/379 (100%), Positives = 379/379 (100%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 361 KMFGRITKEDIERNTHSLY 379 KMFGRITKEDIERNTHSLY Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) n=37 Tax=Bacteria RepID=A4G4W0_HERAR Length = 384 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 181/379 (47%), Positives = 255/379 (67%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +IDY++LR WW L+GVLL+ FAVTDGFD+G G+L F+ RND ERR++INS+ P W+GN Sbjct: 6 LIDYDILRLTWWALIGVLLLAFAVTDGFDLGTGILLPFVARNDIERRVVINSVGPVWEGN 65 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FAAWP +YA AFSGFY+AM +L +L RPV F +RSK E+ WR WD Sbjct: 66 QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILVALILRPVAFKFRSKREDPGWRARWD 125 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +F FVP L+ GVA GN+LQGVPF +D + ++Y G+FF LLNPF LL G+VSV M+ Sbjct: 126 GVLFFSGFVPSLIFGVALGNVLQGVPFRLDLDMHIFYEGSFFGLLNPFALLCGLVSVAML 185 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+ +LQ++T G + R R +AAL T++ + AG+ + +DGY + S +D Sbjct: 186 AMHGSAWLQLKTDGVVAERARRYGSMAALATVLLYGCAGLLLWKYVDGYRISSMIDPVGP 245 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPL K V AGAW VN+ P A P LG++ + L RM + + + S+++++ Sbjct: 246 SNPLLKTVEGHAGAWFVNYTAQPWTMAAPVLGLLGAIGAWLGLRMRREIFTLLCSAVSIS 305 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 I+L+ G +MFPF++PSS ASLT+WD++SS LTL +M V+V+ +PII+ YT W Y Sbjct: 306 GIVLSVGASMFPFILPSSIHPAASLTVWDSSSSHLTLFIMLVVSVIFIPIIVAYTTWVYH 365 Query: 361 KMFGRITKEDIERNTHSLY 379 ++G++ ++ I T Y Sbjct: 366 VLWGKVDEKAIRDETGHAY 384 >UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 Tax=Proteobacteria RepID=A6VVF5_MARMS Length = 378 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 225/378 (59%), Positives = 286/378 (75%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +DYE+L+ IWW+L+GVLLIGF+VTDGFDMGVG L + +G ND+ERR+MINSIAPHWDGNQ Sbjct: 1 MDYELLKVIWWVLIGVLLIGFSVTDGFDMGVGSLLKIIGGNDSERRVMINSIAPHWDGNQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VW ITAGGALFAAWP+VYA +FSGFY AM+LVLA+LFFRP+GFDYRSK+E T+WRN WDW Sbjct: 61 VWFITAGGALFAAWPVVYATSFSGFYFAMMLVLAALFFRPIGFDYRSKLENTKWRNGWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI GS VPP++ GVAFGNLLQGVPF D+YLR+ YTG+FF LLNPF +L G+VS+ M++ Sbjct: 121 GITFGSAVPPIIFGVAFGNLLQGVPFEFDQYLRVTYTGSFFALLNPFAILCGLVSLLMLM 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 TQG +LQM+T L + + + V F +AGVW+ YGIDGYV+ S++D Sbjct: 181 TQGGAWLQMKTDDALLEKASRITAITGALAAVLFIIAGVWLAYGIDGYVLTSSIDGNKVM 240 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL K + GAWL N++ P L P +G+ L +TA M K A +F+ SSL +A Sbjct: 241 TPLMKTAEVQPGAWLANYDKVPALMLAPIIGIAGMLFAAITAVMRKGALSFLSSSLGIAG 300 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 II+TAG +MFPF+MPSS+ + SLTMWDATSS+ T+ +M VA + VPI+L+YT W Y+ Sbjct: 301 IIVTAGGSMFPFLMPSSSYPSMSLTMWDATSSENTMMIMFVVACIFVPIVLIYTLWNYFV 360 Query: 362 MFGRITKEDIERNTHSLY 379 M+GR+TK+ IE N HSLY Sbjct: 361 MYGRLTKKHIEENNHSLY 378 >UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 Tax=Gammaproteobacteria RepID=A5F0M8_VIBC3 Length = 378 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 200/379 (52%), Positives = 277/379 (73%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M +Y+ LR IWW L+G LLIGF +TDGFDMGVG L LG++++++R+MINSIAPHWDGN Sbjct: 1 MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLITAGGALFAAWP+VYA +FS Y+AM L+L +L+ RP+ +YR+KI+ WR + D Sbjct: 61 QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I + +PPL+ GVAFGNL+QG+PF+++ L + Y G+F L+ PF +L+G + V M Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + QG+ +L ++T LH + R TAQ++ L F + G ++++G++GY++ S++D+ A Sbjct: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPLNK V ++AGAWL NF P +W P G+++ + L+A+ A FV +S+T A Sbjct: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 CIILTAG AMFPF+MPSS + SLT+WDATSS+ TLN+MT VA V++PIIL YTA+ Y Sbjct: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359 Query: 361 KMFGRITKEDIERNTHSLY 379 MFGR+ K+ IERN HSLY Sbjct: 360 TMFGRLDKQYIERNHHSLY 378 >UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 Tax=Bacteria RepID=Q2J1M0_RHOP2 Length = 383 Score = 331 bits (848), Expect = 4e-89, Method: Composition-based stats. Identities = 221/383 (57%), Positives = 274/383 (71%), Gaps = 4/383 (1%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+DYE L+F+WW+ VG+LL+GFA+TDG DMGVG L F+ R D ERRI INS+ PHWDGN Sbjct: 1 MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVW ITAGGA+FAAWP VYAAAFSGFY+AM+LVL +LFFRPVGFDYRSKIE WRN WD Sbjct: 61 QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLL----NPFGLLAGVVS 176 WG+F G +P L+ GVAFGNLLQGVPF +DE LR +Y G+ L NPF LLAGV+S Sbjct: 121 WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS 180 Query: 177 VGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMD 236 + M+ G +LQ+R G + R R + + + V FALAGVW+ G+DGY + Sbjct: 181 LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA 240 Query: 237 HYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSS 296 H AASNPL KEVVR GAWL + P+ +PALG+V PLLT+L A + + AFV S+ Sbjct: 241 HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA 300 Query: 297 LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 + II TAG++MFPF+MPSS +SLT+WDA SS+LTL VM W V+ +PI+L YT Sbjct: 301 FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV 360 Query: 357 WCYWKMFGRITKEDIERNTHSLY 379 WCY M+GR+T ++IE HS Y Sbjct: 361 WCYANMWGRVTADEIEARAHSAY 383 >UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Actinomycetales RepID=D1BDL9_SANKS Length = 368 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 136/372 (36%), Positives = 210/372 (56%), Gaps = 38/372 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +D E L+ +W++L+ VL G+ V +GFD GVGML LGR + +RR+MIN+I P WDGN+ Sbjct: 1 MDLETLQVLWFVLIAVLWTGYLVLEGFDFGVGMLMPILGRKEKDRRVMINTIGPVWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA+ FSGFY+ + ++L L R +GF+YRSKI + WR WD Sbjct: 61 VWLLTAGGATFAAFPEWYASLFSGFYIPLFIILICLIVRGMGFEYRSKINDATWRRRWDA 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + IGS++P ++ GVAF NL++GV + + + TG FF LL+PF LL GVV++ + + Sbjct: 121 SVIIGSWLPSILWGVAFANLVRGVEMDANHTM----TGGFFSLLSPFALLGGVVTMLLFL 176 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 T GA ++ ++T G++ +R R A + ++ ++V +W Sbjct: 177 THGAVFVALKTEGDIRVRARRLAGMFSVASVVAAGGWALWAQLA---------------- 220 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 T W A+ + +++ + WAF +S+L + Sbjct: 221 ------------------YGTTWTWGAVAVAAAALVAVVVSNARAREGWAFFWSALAILA 262 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ +M+P VMP+S SL + +A+S++ TL VMTWVA+ L P++LLY +W YW Sbjct: 263 AVVLIFGSMYPDVMPASNDPANSLNIRNASSTEYTLTVMTWVALFLTPLVLLYQSWTYWV 322 Query: 362 MFGRITKEDIER 373 RI I Sbjct: 323 FRKRIGTHHIPE 334 >UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Methylococcus capsulatus RepID=Q609X1_METCA Length = 378 Score = 318 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 176/379 (46%), Positives = 243/379 (64%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M DYE +R IWW++ G + GF +T GFD G+G L F+GRND ERR++IN+I P WDGN Sbjct: 1 MFDYETMRVIWWVITGAVATGFVLTVGFDFGIGALLPFIGRNDVERRVVINTIGPTWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FA WP VYA FSG Y+AM+LVL +LFFRPVGFDYRSK+E +WR WD Sbjct: 61 QVWLILLGGAIFAVWPAVYATLFSGLYIAMLLVLYTLFFRPVGFDYRSKLESPQWRTAWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 WG+FIG VPP+++GV GNLL G+PF++D LR +Y G+F+ LL PF LL GV+ + Sbjct: 121 WGLFIGGAVPPVLMGVLVGNLLVGLPFHLDGSLRTFYDGSFWGLLTPFPLLCGVIGLLAC 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + GA YL RT + R R A + +V ++ LA WV+ GI + + A Sbjct: 181 VFHGAVYLGCRTERPIEQRARRVAAIGGVVLVLLMILAAAWVILGIPRPEILTMAGPNAP 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNP+ K V G+WL NF P L+ PAL V+ A ++A AF S++ + Sbjct: 241 SNPMAKTVDFS-GSWLGNFLAHPRLFVAPALAVLGVSAAAALAGSGRSAAAFAASAVGMG 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++ T G +FPF++ S+T +SLT+WDA++S L L + ++ +PI+LLYT W Y Sbjct: 300 GLLWTVGFGLFPFMLISTTDPRSSLTIWDASASHLNLQWSLAITLMFLPIVLLYTRWAYR 359 Query: 361 KMFGRITKEDIERNTHSLY 379 ++G++T DI + H+LY Sbjct: 360 VIWGKVTVADIAKGDHTLY 378 >UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXC1_CHLT3 Length = 359 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 138/361 (38%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+LL+GVLLIG+A+ DGFD+GVG L L ++D ERR+++NSI P WDGN+VWLIT Sbjct: 3 LNTIWYLLIGVLLIGYAILDGFDLGVGALH-LLAKDDNERRLLLNSIGPVWDGNEVWLIT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P YA AFSGFY+A +L+L SL R V ++RSK E WRN WD+ IG Sbjct: 62 GGGALFAAFPHAYATAFSGFYLAFMLLLVSLISRAVSIEFRSKRESQAWRNFWDYSFSIG 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + ++ GVA GN++ G+ D + Y G FF LL P+ +LAGV ++ + GA Sbjct: 122 SVLSAILFGVAIGNMVAGIKIGSD----MEYAGTFFDLLTPYTVLAGVFNLALFTMHGAI 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL ++T G+L R + A A V L + + +Y + + + Sbjct: 178 YLFVKTEGDLQERVKGWAMRAFFVFLALYVIVTAATLYMKPEMIANFSFGKIQPATGSAH 237 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 E+++ + F W I L + T K AF+ S+ T+A ++ Sbjct: 238 ELIQSNQVVISVFA-----WIIVILNGLAIANIPRTLVHGKELQAFLSSACTIAALVFLF 292 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + +FP ++ SS SLT+++A SS+ TL M +A++ +P++L YT YW G+ Sbjct: 293 AVGVFPNMITSSLDPAYSLTIYNAASSEKTLFTMLIMALIGMPLVLSYTISIYWVFRGKT 352 Query: 367 T 367 T Sbjct: 353 T 353 >UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 Tax=Salmonella enterica subsp. enterica RepID=B4SUI6_SALNS Length = 378 Score = 308 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 211/379 (55%), Positives = 272/379 (71%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+DYE LRFIWWLL+GV+L+ F VTDGFDMGVG L + RND ERR++INS+ HW+GN Sbjct: 1 MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI AGGALFAAWP VYAAAFSGFYVAMILVL +LFFRP+ FDYR KI RWR +WD Sbjct: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 G+ IGS VPP+V G+AFGNL GVPF L + Y G F+QLL+PF LL G++S+ ++ Sbjct: 121 TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 I QG +LQ++T G + R + + +AL+ ++CF LAG W+ G+DG+V+ T D Sbjct: 181 IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVL-LTQDANGP 239 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPL K V GAW+ +F +P+L IP LG++LP+L + F+F+SLT A Sbjct: 240 SNPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQA 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 C+I TAGI +FPFVMPSS +SLT+WD+TSSQ+TL +M + ++ +PI+LLYT W Y+ Sbjct: 300 CVIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYY 359 Query: 361 KMFGRITKEDIERNTHSLY 379 KM GRI E + RN H LY Sbjct: 360 KMLGRINLETLRRNDHELY 378 >UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subunit II n=6 Tax=Alphaproteobacteria RepID=C5AXY0_METEA Length = 384 Score = 308 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 189/380 (49%), Positives = 246/380 (64%), Gaps = 1/380 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 + DYE LR IWW+L+GVLLIGFAVTDGFD+GVG L F+GR D ERR+ I++++ W+GN Sbjct: 5 LSDYESLRLIWWVLLGVLLIGFAVTDGFDLGVGALLPFVGRTDVERRVAIHTVSATWEGN 64 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWL+ GGA+FAAWP +YA +FSGFY+AM LVL +L RPV F YRSK WR+ WD Sbjct: 65 QVWLVLGGGAIFAAWPALYALSFSGFYLAMFLVLFALILRPVAFKYRSKRASAAWRSRWD 124 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W +F+G VP L+ GVA GN+LQGVPF+ LR Y G+ LLNP LL G+VS+ M+ Sbjct: 125 WALFVGGAVPALIFGVAVGNVLQGVPFHFTGDLRPIYGGSLLGLLNPLALLCGLVSLVML 184 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG-IDGYVVKSTMDHYA 239 + GA +L + G + R RA AAL T F L G+ + G GY V S + Sbjct: 185 VAHGAAWLAFKAEGAVAERARAIGLKAALATAALFTLGGLLIWAGAFGGYRVVSPLPGDG 244 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 SNPL K VV +AGAWL NF P L +P LG+V PLL L R F+ SSL + Sbjct: 245 PSNPLTKAVVADAGAWLANFRAHPALALVPLLGIVGPLLAALGFRARHEGLTFLASSLGI 304 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ACII T G++MFP ++PS+T +LT++DA+SS+ TL M V+ +PIIL YTAW Y Sbjct: 305 ACIIATVGLSMFPVILPSNTHPGHALTVFDASSSRATLRNMLIATVIFLPIILAYTAWVY 364 Query: 360 WKMFGRITKEDIERNTHSLY 379 ++G+++ DI + Y Sbjct: 365 RVLWGKVSDRDITAPGSAAY 384 >UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Bacteria RepID=A1AN69_PELPD Length = 351 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 138/377 (36%), Positives = 209/377 (55%), Gaps = 28/377 (7%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++ + IW++L GVL + +TDGF +G G ++ FL ++DTERR++IN++ P WDGN+ Sbjct: 1 MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA FS Y A++L+L +L R V F++R KI+ W+ WD Sbjct: 61 VWLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDR 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLY-YTGNFFQLLNPFGLLAGVVSVGMI 180 I I SF+P L+ GVAFGN+ +G+P D ++ Y G+ LLNP+GLL G++ V + Sbjct: 121 AITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGSLLTLLNPYGLLTGILFVMLF 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+ Y ++T G+L R A A L L Y Sbjct: 181 AVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATYPATRLY----------- 229 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 N+ +P+L IP + V LL L A D+ AF+FS LT+ Sbjct: 230 ----------------DNYLKSPLLLIIPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIV 273 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + T +FP ++PSS ++LT+++++SS LTL +MT VA++ VPI++ Y AW Y Sbjct: 274 FVCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYR 333 Query: 361 KMFGRITKEDIERNTHS 377 R+T ED+ ++ + Sbjct: 334 IFRARVTSEDVLESSEA 350 >UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 Tax=Bacteria RepID=D1A2D3_THECD Length = 363 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 197/370 (53%), Gaps = 43/370 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG-----RNDTERRIMINSIAPHWDGNQ 61 L +W+LL+ VL G+ + +GFD GVG+L L +DT+RR+MIN+I P WDGN+ Sbjct: 3 LTTVWFLLIAVLWAGYFLLEGFDFGVGVLMPVLAPRKAAHSDTDRRVMINTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+ AGGA FAA+P YA+ FSGFY+A++L+LA+L R V F+YR K++ RWR WD Sbjct: 63 VWLLVAGGATFAAFPEWYASLFSGFYLALLLILAALIVRGVAFEYRGKVDSDRWRRNWDL 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 IF GS VP L+ GVAF N+LQGVP + +YTG LLNP+ LL G+ ++ + Sbjct: 123 AIFWGSAVPALLWGVAFANILQGVPLDAQH----HYTGTLLTLLNPYALLGGLTTLTVFT 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L ++T G + + R + A T+ A V Sbjct: 179 LHGAVFLALKTRGHVRDQARRAVRYLAAPTVAIAAAFLVITGVR---------------- 222 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 P WA A+ + + A + WAF +++ + Sbjct: 223 ------------------FGVPWTWATTAVAALALAGGVAAALRGRDGWAFTGTAVAIVA 264 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + T ++P V+PS+ SLT+ +A S+ TL VMTWVAV+ PI+L Y AW YW Sbjct: 265 TVATMFGDLWPAVLPSTIDPAYSLTVENAASTPYTLKVMTWVAVIFTPIVLAYQAWTYWV 324 Query: 362 MFGRITKEDI 371 R+T+E I Sbjct: 325 FRKRLTREAI 334 >UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 Tax=Aeromonas RepID=A0KIS6_AERHH Length = 375 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 3/378 (0%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +DYE L+ IWW LV +L+GF V DGFD+GV ML + +ND ERR+++NS+ P W+GNQ Sbjct: 1 MDYETLKLIWWGLVLFMLVGFVVMDGFDLGVAMLLPVVAKNDEERRVLLNSVGPVWEGNQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI GALFAAWP+VYAAAFS YV + +L LF RPVGFDYRSK+ + WR WD Sbjct: 61 VWLIAGAGALFAAWPLVYAAAFSALYVPFMFLLFGLFLRPVGFDYRSKLADPVWRRWWDR 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + +G +P LV G G LLQG+PF D LR++Y F P L ++ +++ Sbjct: 121 ALVVGGLLPTLVFGATLGFLLQGLPFRFDAALRIHYGAFDFHW--PLLLTCMGTALALLL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA++LQ +T GE+ R + + FAL GVW + + GY V D A Sbjct: 179 LHGASFLQCKTQGEIARRCARQSLWLGPLASGLFALGGVW-LSQMAGYRVLEIGDINGAL 237 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL KEV WL NF P LW +PALG+VLP+++ L + + A + S A Sbjct: 238 TPLMKEVGVAQQGWLANFVAHPWLWCVPALGLVLPMVSSLASARELPRTALLASGGACAS 297 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++LT IA+FPFV+PSS ++SLT+WD+TSS+ TL +M + VL+PI + YT W Y Sbjct: 298 MMLTIAIALFPFVLPSSLDPSSSLTLWDSTSSERTLFIMLGIVGVLMPINIGYTLWVYRV 357 Query: 362 MFGRITKEDIERNTHSLY 379 + G+++ + I ++ HSLY Sbjct: 358 VRGKMSAQQIRQHGHSLY 375 >UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Tax=Coxiella burnetii RepID=A9KD50_COXBN Length = 381 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 161/379 (42%), Positives = 240/379 (63%), Gaps = 5/379 (1%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +++Y L+ +WW+++G +L+ +A T GFD GV M+ FL RN+T+RRI++N+ AP WDGN Sbjct: 3 LLNYTFLKVVWWMIIGSILVVYASTAGFDSGVTMIMPFL-RNETQRRILLNTSAPVWDGN 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 W++ AGG LF WP+VY+ AFSG Y+ ++ ++ SLF RP G+DYR K+ WR WD Sbjct: 62 LTWILFAGGGLFVVWPVVYSTAFSGLYLILLFIMWSLFLRPPGYDYRGKLPSPIWRRSWD 121 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +FI S VP G+AFGN L G PF+ D R YYTG++F+L N FG+L+G SV M+ Sbjct: 122 VALFISSIVPVFFFGLAFGNCLLGFPFHFDSLFRDYYTGSWFELFNGFGILSGTASVLMV 181 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + G+ Y+Q RT G+L R +A ++ + F++AG+ V+Y I GY + S A Sbjct: 182 LMHGSAYIQRRTEGDLRELGRRIHYIATVLLTIAFSVAGLLVLYRIKGYTLISYPKD-AT 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 PLN V+R GAWL ++N+ P + P + +LT+L+ + F S+L + Sbjct: 241 IYPLNNVVIRSVGAWLNSYNHHPWKYFGPIFAYLGIILTLLSNFFRWYTFCFWSSALAIM 300 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 +I T G +FPF+MPSST + SLT+W+ATSSQ LNVM +V V+L +IL Y + Y Sbjct: 301 GLIGTIGFTLFPFIMPSSTAPDQSLTVWNATSSQYGLNVMLYVGVILFIVILGYKLYAYH 360 Query: 361 KMFGR---ITKEDIERNTH 376 ++ + IT++D+E + H Sbjct: 361 TIWSKQKTITEKDLETDKH 379 >UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2 Tax=Bacillaceae RepID=B7GK13_ANOFW Length = 360 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 191/368 (51%), Gaps = 32/368 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +E++ IW+ L G++ + V DG+ +G GML FL RN ER + ++ P W GN+ Sbjct: 19 MSHEMVAIIWFGLWGLIWTIYFVLDGYTLGTGMLFPFLARNRQERNQLQEAVGPFWGGNE 78 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLITAGGA FAA+P VYA FS Y M+L+L +LFFR G ++ K + W+ W W Sbjct: 79 VWLITAGGATFAAFPAVYADLFSFLYTPMMLILFALFFRAAGLEFMHKDDAPLWQKSWKW 138 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 I SF L+ GVAF NL G+ Y G FF LL+P+GLL G++ + + I Sbjct: 139 AFTISSFALALLFGVAFANLFYGLKIGPSG-----YEGTFFSLLHPYGLLGGLLFISLFI 193 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA ++ ++ VGE+ R A A+ AA++ V +L V + Sbjct: 194 VSGALWVMLKAVGEVAERAYAVARPAAIIATVILSLFFVATSNRTPLF------------ 241 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 NF PILW +PAL V LL +L + AF LT+ Sbjct: 242 ---------------HNFTKAPILWVVPALTFVCALLMLLFVWQKRIGLAFTNICLTIFT 286 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ T I MFP ++PS S T+++A S+L L +M VA+V+VPI++ Y W Y Sbjct: 287 LMATGFIGMFPNMLPSRINDEYSTTLFEAAGSELNLKIMLGVAIVMVPIVVGYQLWSYKL 346 Query: 362 MFGRITKE 369 +ITKE Sbjct: 347 FKEKITKE 354 >UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB n=53 Tax=Bacteria RepID=A0PP39_MYCUA Length = 538 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 112/371 (30%), Positives = 190/371 (51%), Gaps = 42/371 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLT-RFL----GRNDTERRIMINSIAPHWDGNQ 61 L+ +W+ ++ VL +GF + +GFD GVGML F G + RR +N+I P WDGN+ Sbjct: 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLIT+G A+FAA+P YA FS Y+ ++ +L + R V ++R K+++++WR + D+ Sbjct: 63 VWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWRALADF 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI GS++P ++ GVAF L++G+P + + L L + +LN + LL G+ + G+ + Sbjct: 123 GIAAGSWLPAILWGVAFAILVRGLPVDANGRLAL----SIGDVLNAYTLLGGLATAGLFL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA ++ ++T G + A V +L V A GVW Sbjct: 179 FYGAVFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLA---------------- 222 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 + + V +L R WAF+ ++ +A Sbjct: 223 -----------------YGKQWTWALLGVAVVAQMAAVLLVWRRVSDGWAFLCIAVVVAA 265 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++L A++P ++PS+ ++T+++A+S+ TL +MTWV + P+ ++Y AW YW Sbjct: 266 VVLLLFGALYPNLVPSTLNERWNVTVYNASSTPYTLKIMTWVTALFAPLTVVYQAWTYWV 325 Query: 362 MFGRITKEDIE 372 RI+ E I Sbjct: 326 FRQRISAERIP 336 >UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 Tax=Proteobacteria RepID=A5FZ08_ACICJ Length = 379 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 163/378 (43%), Positives = 218/378 (57%), Gaps = 1/378 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M Y L+ IW +L+GVLL G + G DMGVG L RF+GR D ERR + I PHWDGN Sbjct: 1 MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVW I GGA+FAA+P +YA +FS FYV MIL+L S+ RPV F+YRSK++ RWR WD Sbjct: 61 QVWFILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNF-FQLLNPFGLLAGVVSVGM 179 W I +P ++ G AFGN+LQGV F+ + Y G+F + LLNPF ++ GV+S+ + Sbjct: 121 WAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLAL 180 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 + QG L +R G + R R A A L+ FA+ GVWV + Sbjct: 181 AVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP 240 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 A+ V AGAW+ NF+ P+LW +PA+G++ + L K + +L Sbjct: 241 ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAW 300 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 I T G AMFPF+MPS+T SLT+W+A+ S L M A+V VPIIL YTAW + Sbjct: 301 IGTIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAF 360 Query: 360 WKMFGRITKEDIERNTHS 377 M G++ E + N HS Sbjct: 361 RVMRGKVKTESVIANDHS 378 >UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM68_AKKM8 Length = 345 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 197/364 (54%), Gaps = 31/364 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW++LVGVL G+A+ DGFD+G G L F+ + D RR+ +N++ P WDGN+VWLIT Sbjct: 10 LQIIWFILVGVLFSGYAILDGFDLGTGALQLFI-KGDENRRLTLNAVGPVWDGNEVWLIT 68 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P VYA+ FSGFY+A +L+L +L FR V ++RSK WR WD I Sbjct: 69 GGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSIS 128 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L+IGVA GN+ +G+P + +TG F LLNP+ +L G+ +V + G Sbjct: 129 SLLAALLIGVAMGNVTKGIPLDDHGN----FTGTFLSLLNPYSILLGLTTVALFSMHGGI 184 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL M+T G L + R + ++ V L G + + Sbjct: 185 YLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAA-------------- 230 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 +P ++ I AL V+ + ++ WAFV S T+ C++ Sbjct: 231 ------------LERSPWIYGIAALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALF 278 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 G AMFP ++ S SLT+ + +S++ +L VMT++A++ VP++L Y+A YW G++ Sbjct: 279 GTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGKV 338 Query: 367 TKED 370 + Sbjct: 339 QLNE 342 >UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U471_9DELT Length = 350 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 190/369 (51%), Gaps = 31/369 (8%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + L IW++L GVL + + DGFD+GVG L F+ +N+ E+R M+NS P WDGN+VW Sbjct: 12 HYYLAVIWFVLWGVLWAVYFILDGFDLGVGTLLPFMAKNEDEKRAMLNSTGPFWDGNEVW 71 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 LITAGG FAA+P YA FSG Y A++L+L +L R V F++RSK+E WR +WD Sbjct: 72 LITAGGVTFAAFPYAYAQMFSGLYTALMLLLFALIVRGVSFEFRSKVESASWRKLWDTCH 131 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 +GSF+P L++GVAF N+ +G+P + + + F LLNP+GL GV+ V + + Sbjct: 132 AVGSFLPALLLGVAFANIFRGLPLDETGFSQ----AGLFGLLNPYGLAGGVLFVIIFVMH 187 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 GA +L +R G+L R A + +V L + + Sbjct: 188 GALWLCIRATGDLRARAEGLAVKLWPIQVVLTVLFLAYSAVETQLF-------------- 233 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 N+ P+L+ I AL V +L K A+ S L + Sbjct: 234 -------------SNYFLYPVLFVILALPVAGLVLMRAYMGAGKWWMAWGSSCLYIGGTA 280 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 L +FP ++PS+ SLT+ ++ SS LTL +M V +V +P+I+ Y W Y Sbjct: 281 LFGVAGIFPAIIPSNPNPGNSLTIMNSASSPLTLGIMLGVVLVFLPVIIGYQFWAYKTFA 340 Query: 364 GRITKEDIE 372 + KEDI Sbjct: 341 TPMAKEDIH 349 >UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TEW5_HELMI Length = 345 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 129/356 (36%), Positives = 205/356 (57%), Gaps = 31/356 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ W++LVGVLL+G+A+ DGFD+GVG L L ++ ERR MI SI P+WD NQVWL+T Sbjct: 4 LQITWFVLVGVLLLGYALLDGFDLGVGSLY-LLTKDPDERRRMIYSIGPYWDSNQVWLLT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGA+FAA+PMVYA FSGFY+A++LVL +L FR V +++ +++ WR WD G +G Sbjct: 63 GGGAIFAAFPMVYATVFSGFYLALMLVLFALIFRAVSIEFQHQLDSPGWRKWWDLGFSLG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P ++ GVA GN+L+G+P + + Y G+F LLNP+ L+ G+VS+ + GA Sbjct: 123 SLLPSILYGVAVGNILRGIPLDANGG----YLGDFLGLLNPYSLVMGLVSLSLFAMHGAA 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ ++ G L ++ R A+ A L L F + W G Sbjct: 179 FIISQSDGALQVKARRWARAAWLTLLPLFLIGTAWSYLGTP------------------- 219 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N+ + P+LW P + ++ + A S+LT+ ++ T Sbjct: 220 -------RLFSNYFDVPLLWVFPLIALLGLAAFPAALKGGNAYGPLGASALTIFGLLTTM 272 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 ++FP+++P+S + SLT+++A+SS+ TL +M +A++ +PI+L YTA+ Y Sbjct: 273 AASLFPYIVPASNNLANSLTVFNASSSERTLMIMLILALIGLPIVLTYTAYIYRTF 328 >UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=B0U137_FRAP2 Length = 398 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 159/398 (39%), Positives = 228/398 (57%), Gaps = 20/398 (5%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +VL+ I WL+VGVL+ A T GFD GVG+L +F+G++D E+R +IN++ P WDG+Q Sbjct: 1 MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VW ITAGGA+FA WP VYA +FSG Y+A++LVL LF RP F+YR KI+ W+N WDW Sbjct: 61 VWFITAGGAIFAIWPQVYATSFSGLYIAILLVLWGLFLRPPAFEYRKKIDNPTWKNFWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTG-----------NFFQLLNPFGL 170 + +GS +P +V+GVA GNL G P + D+ RL Y LL PF L Sbjct: 121 MLLLGSVIPIVVMGVAIGNLYLGFPISYDDTARLIYGTVTDGQYQSMWVTLIHLLTPFAL 180 Query: 171 LAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMY---GID 227 L G+ ++ M + G+ Y ++RT G L R R V A + LV F +A +W+ Sbjct: 181 LFGIFALNMSLMHGSAYAKLRTDGVLRDRFRKITNVTATIYLVLFVVAAIWIALIPGYQY 240 Query: 228 GYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNT--PILWAIPALGVVLPLLTILTARM 285 T A +P + V+ +W NF +W P L V LL I Sbjct: 241 STGASCTYASEALQHPFSAGVITSDHSWYYNFTQAKTIWMWFAPILAFVGALLVIKFNNK 300 Query: 286 DKAAWAFVFSSLTLACIILTAGIAMFPFVMPSST-MMNASLTMWDATSSQLTLNVMTWVA 344 DK AF+ S +L +LT G A+FPF+M S+ SLT+++A+SSQ +L + A Sbjct: 301 DKDGAAFIASMASLLGAVLTVGFALFPFIMVSNVGNFQYSLTVFNASSSQTSLIGILCAA 360 Query: 345 VVLVPIILLYTAWCYWKMF---GRITKEDIERNTHSLY 379 V+++PII YT + Y KM+ R++ E+++ N+H LY Sbjct: 361 VIILPIIFSYTFFVYKKMWANGRRVSAEEVKANSHELY 398 >UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 Tax=Bacillus RepID=Q816N2_BACCR Length = 345 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 183/369 (49%), Gaps = 32/369 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++ +++L IW+ L GV+ + + DG+ +G GM+ F+ ++ ER + +I P W GN Sbjct: 3 LMSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGN 62 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWLITAGGA FAA+P+ YA FS Y + LVL +LF R G ++ K + W+ Sbjct: 63 EVWLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCK 122 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W IGSF+ + GV F NL G+ + Y GN LLN +G+L G+ + Sbjct: 123 WAFAIGSFLIAFLFGVTFANLYYGLQIGKNG-----YEGNLLSLLNHYGILGGLFFTAIF 177 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + GA ++ ++T GE+ R A+ ++ + A+ V Sbjct: 178 VVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVAT------------------ 219 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 NF P+L+ +P L +++ +L ++ K AF F LT+A Sbjct: 220 ---------ANRTNLFQNFTEYPVLFILPVLAMLMSVLALIMVYKHKIGLAFTFVCLTIA 270 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + T MFP ++PS S T+++A SQL L +M +VA+V+VPI++ Y W Y Sbjct: 271 MFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIGYQLWSYS 330 Query: 361 KMFGRITKE 369 +I K+ Sbjct: 331 IFKNKIHKD 339 >UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUL7_9BACI Length = 339 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 134/364 (36%), Positives = 202/364 (55%), Gaps = 32/364 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW++L+ VL+IG+AV DGFD+G+G L LG+ + E+R +INSI P WDGN+VWL+T Sbjct: 3 LQLIWFILLAVLIIGYAVLDGFDLGIGTLFYQLGKTEEEKRTLINSIGPVWDGNEVWLLT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKI-EETRWRNMWDWGIFI 125 GGALFAA+P VYA FSGFY+AM++VL L FR V +Y K ++ + + I Sbjct: 63 GGGALFAAFPFVYATVFSGFYLAMMVVLFGLIFRAVAVEYYFKCSDDPPMQRLMGKLFMI 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS +P L+ GVA GNL+ G+P + + + YT FF LL+P+ LL GV+ + + QG Sbjct: 123 GSLLPALLFGVAMGNLVIGIPMDQN----MNYTATFFHLLHPYALLIGVIGLVGFLLQGT 178 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 TY ++T L R +++ +V V + L V Sbjct: 179 TYTILKTENALQRRAIKFSKLFVMVLGVLWILGTVAT----------------------- 215 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 V A NF N P+L+ P L VV +L K F+ SS+ + +LT Sbjct: 216 ---VIFAPHMFTNFTNQPLLFVFPLLTVVAIVLIPFFMYQKKYMAVFLSSSVIITSKLLT 272 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +FP ++ + SLT+++A+SS+ TL VM +A++ +P+++ YTA+ YW G+ Sbjct: 273 LAGGLFPNLV-TGADPATSLTIYNASSSEYTLTVMLIIALIGMPVVIGYTAFIYWHFRGK 331 Query: 366 ITKE 369 + E Sbjct: 332 ASHE 335 >UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Tax=Bacillales RepID=CYDB_BACSU Length = 338 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 184/364 (50%), Gaps = 33/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W++LV VL +GF +GFD GVGM TRFLG N+ ERR++IN+I P WD N+VWL+T Sbjct: 4 LHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLLT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GA+FAA+P YA SG+Y+ ++VL +L R V F++R K++ +W +WDW +F G Sbjct: 64 GAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFFG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +PP V+GV F L +G+P + D + + + +N + +L GV + G Sbjct: 124 SLIPPFVLGVLFTTLFRGMPIDADMNIHAHVS----DYINVYSILGGVTVTLLCFQHGLM 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ +RT+G+L R R AQ V V Y D + + Sbjct: 180 FITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGE------------ 227 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 I + L V+ +L + R K W F + LA + Sbjct: 228 -----------------ITIPLAVLIVICFMLAAVFIRKKKDGWTFGMTGAGLALTVGMI 270 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I++FP VM SS LT+ +A+S +L VM+ A+ L+P ++ W Y+ R+ Sbjct: 271 FISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIWSYYVFRKRV 330 Query: 367 TKED 370 + ++ Sbjct: 331 SHKE 334 >UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Actinomyces RepID=C0W2T5_9ACTO Length = 378 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 130/394 (32%), Positives = 196/394 (49%), Gaps = 52/394 (13%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 +L +W++L+ VL IG+ +GFD GVGML + LGRN+ ERR M+ +I PHWDGN+VWL Sbjct: 2 TLLSILWFILIAVLWIGYLTLEGFDFGVGMLLKILGRNEQERRAMMKTIGPHWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TAGGA FAA+P Y FSG Y+ + L+L L R ++RSKI +WR+ WDW Sbjct: 62 LTAGGATFAAFPEWYGTLFSGAYLVLFLILLCLIVRICAIEWRSKINSQKWRDNWDWAHT 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDE-------------------YLRLYYTGNFFQLL 165 + +++P ++ G AF NL+QG+ V E TG FF LL Sbjct: 122 VSTWLPSILWGAAFANLVQGMKIEVVEVATGNVIPAENVPSETLLAGASHELTGGFFSLL 181 Query: 166 NPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG 225 PF +L G+V+ + +T GA Y ++T G+L R A A+ +A+ + A+ +W Sbjct: 182 TPFTILGGLVTCSLFLTHGALYTALKTAGDLSARAEAFARKSAIASTALTAVWALWAQLA 241 Query: 226 IDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARM 285 ++ + W + V + ++L Sbjct: 242 ---------------------------------YSLNALAWIPLLVAAVFLIASLLMTWA 268 Query: 286 DKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAV 345 + WAF +A ++ AM P VM SS + SLT+ A S +TL +MT A+ Sbjct: 269 GRQGWAFSLHFGGIAFAVVFIFSAMAPNVMRSSIDDSYSLTIAQAASDDVTLAIMTVAAI 328 Query: 346 VLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY 379 + VP++L YT W Y R++ E I+ N L+ Sbjct: 329 IFVPVVLFYTIWGYKVFSKRVSAEKIDPNEGGLH 362 >UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Listeria RepID=C2C3U7_LISGR Length = 350 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 182/364 (50%), Gaps = 33/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W+LLV VL IGF +GFD GVGM TRFL ++ ER++++N+I P WD N+VWLIT Sbjct: 16 LNELWFLLVAVLFIGFFFLEGFDFGVGMATRFLAKSSNERKMLVNTIGPFWDANEVWLIT 75 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FAA+P YA FSG+Y+ +++L +L R V F++R + + W WDW IF G Sbjct: 76 AGGAIFAAFPNWYATMFSGYYLPFVVLLLALIGRGVSFEFRGQKDTKTWLKTWDWIIFFG 135 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +PP ++GV F L +G+P + + G F +N F + G+ V + + G Sbjct: 136 SLLPPFLLGVLFSTLAKGMPID----KEMNLHGGFTDYVNIFSVWGGITIVLICLLHGLQ 191 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ +R GEL +R A+ T+V + D + + + Sbjct: 192 FIALRVEGELRIRATKLAKKVWFATVVALLIFVALAFVYTDLFTARPVLVPLMIG----- 246 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 L VV LL+ + F F L + + Sbjct: 247 ------------------------LVVVFYLLSGFFLWKGREILTFTFGGLGIVFTVGAI 282 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + +FP VM SS +LT+++A S +L+VMT VAV L+P +L Y W Y+ R+ Sbjct: 283 FVGLFPRVMISSITEAYNLTIYNAASGHYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKRV 342 Query: 367 TKED 370 + ++ Sbjct: 343 SDKE 346 >UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Bacteria RepID=A7HAW4_ANADF Length = 342 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 188/371 (50%), Gaps = 32/371 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ +W+ L+GVLL G+AV DGFD+GVG L R++ +RR+++NSI P WDGN+VWL+T Sbjct: 3 LQVLWFALLGVLLAGYAVLDGFDLGVGTLYLLARRDE-QRRVLLNSIGPVWDGNEVWLVT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P YA FS Y +L++ +L FR V ++RS+ WR WD F Sbjct: 62 FGGALFAAFPRAYATTFSALYTPFMLLILALIFRAVAIEFRSRRPSRAWRTTWDVAFFAA 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + PL+ G A NL++G+P D ++ G LL+P+ LL G ++ + GAT Sbjct: 122 SALSPLLFGAAIANLMRGLPVRADGEAQIALLG----LLSPYALLVGAFTLSLFALHGAT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T GELH R A AA V + L ++ + I Sbjct: 178 WLLLKTEGELHEDVRRWAWTAAGVFSTLYLLTTIFTLVAIP------------------- 218 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N W + L V+ + + AFV S+ T+ +++ Sbjct: 219 -------RATANLAELRWGWVVVVLNVLAAGNVPRAVYLRRYGQAFVSSAATIVALVVLF 271 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 G+A +P ++ S+ S+T+ + +S+ TL M +A + +P +L YT YW G++ Sbjct: 272 GLAQWPNLVTSTLDPAFSITIRNGSSTAPTLRNMAIIAAMGMPFVLGYTGLIYWVFRGKV 331 Query: 367 TKEDIERNTHS 377 + + R H Sbjct: 332 REGE-HRGGHG 341 >UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol oxidase subunit II n=47 Tax=Proteobacteria RepID=Q0BVW7_GRABC Length = 342 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 107/366 (29%), Positives = 177/366 (48%), Gaps = 30/366 (8%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L +IW +++ V ++ + + DGFD+G G+L R + +R +M+NSIAP WDGN+ WL Sbjct: 4 ENLPYIWGMIIAVAVLAYVLLDGFDLGCGILF-LAEREEEDRDVMVNSIAPVWDGNETWL 62 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + GG L A +P+ YA FS FY +I +L +L FR V F++R K R R WD Sbjct: 63 VMGGGGLLAVFPVAYAILFSAFYPTIIAMLLALVFRGVAFEFRFKAHTLRGRRWWDRAFC 122 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 +GS V L G+ G +LQGV + YTG +F L PF +L GV V G Sbjct: 123 LGSLVAALCQGMTLGGILQGV-----HHNGFAYTGGWFDWLTPFTVLCGVAVVVGYTLLG 177 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 A +L ++T LH+R R A+ ++ L+ A +W + Y ++ Sbjct: 178 ACWLILKTENGLHVRARHYAKPLFILLLLLIAAVSLWTPLLNETYRLRW----------- 226 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 ++ + +P L + L + + + A +++ + Sbjct: 227 ------------FSWPGIVLTAPVPLLVAAMALGFWRSLQHKRHAAPLLYAMGMFLLCYV 274 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 GI++FP ++P + L++ DA + + + AVVL+P++L Y A+ YW G Sbjct: 275 GLGISLFPNIVPPAHGTTP-LSLVDAAAPAASQMFLLVGAVVLIPMVLGYNAYSYWIFRG 333 Query: 365 RITKED 370 ++ + Sbjct: 334 KVRHGE 339 >UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 Length = 338 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 183/364 (50%), Gaps = 33/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W++LV VL +GF +GFD GVG+ TRFLG N+ ERR+++N+I P WD N+VWLIT Sbjct: 4 LHDLWFILVSVLFVGFFFLEGFDFGVGISTRFLGHNELERRVLVNTIGPFWDANEVWLIT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GA+FAA+P YA SG+Y+ I++L +L R V F++R ++ +W WDW IF G Sbjct: 64 GTGAIFAAFPNWYATMLSGYYIPFIIILLALMGRGVAFEFRGQVNNLKWVKTWDWVIFFG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +PP V G+ F +L +GVP + + F ++N + +L G + G Sbjct: 124 SLIPPFVFGLIFTSLFRGVPID----GHMNIHAGFSDIVNVYSVLGGAAVTLLSFLHGLM 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ +RT+G+L R R A+ V + Y D + ++ Sbjct: 180 FITLRTIGDLQERARKMAKRVIGVIFLVVLAFFAMSAYDTDMFTRRAN------------ 227 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 I + L V+ +L I+ K WAF + LA + Sbjct: 228 -----------------ITIPVFVLIVICNVLAIVFMSKKKDGWAFGMTGAGLALTVAMI 270 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I++FP VM SS LT+ +A+S +L VMT VA+ L+P ++ W Y+ R+ Sbjct: 271 FISLFPRVMVSSLKSAYDLTVANASSGDYSLKVMTIVALTLLPFVIGSQIWSYYVFRKRV 330 Query: 367 TKED 370 + ++ Sbjct: 331 SHKE 334 >UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R937_9CHLA Length = 342 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 193/369 (52%), Gaps = 31/369 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 MI+ L FIW+ L+ G+A+ DGFD+GVGML F +++ ERR+M+NSI P WDGN Sbjct: 1 MINASSLEFIWFSAFVALVTGYAILDGFDLGVGMLHLFSKKDE-ERRLMLNSIGPVWDGN 59 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWL+TAGGALFA +P +YA S FYV ++++L L FR V ++RSK WR MWD Sbjct: 60 EVWLVTAGGALFAGFPDIYATLCSAFYVPLMILLGGLIFRAVAIEFRSKRPMPWWRWMWD 119 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 + S + L +GV GNL++G+P + + +TG+ LL+P+ LL G+++V + Sbjct: 120 VLFSLASLIIALALGVVLGNLIRGLPLDAQK----EFTGDLSSLLHPYALLIGIMAVALF 175 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G ++ M+T GELH + R+ + ++ ++L + + + + Sbjct: 176 CMHGGIFILMKTEGELHDKIRSWINPFIIFFIITYSLVTMATLIYMPHMIK--------- 226 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 PI + + ++ K AFV S + Sbjct: 227 -----------------TIQERPIFFLLAVGNMLSIANIPREINQGKDWLAFVSSCFNIV 269 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++L + +P V+ + + SLT++++ SS+ TL ++ +A++ +P++L YT YW Sbjct: 270 FLMLLYAVGTYPEVVRAINDPSLSLTIYNSASSEKTLEILIIIALIGIPLVLAYTTAIYW 329 Query: 361 KMFGRITKE 369 G++ + Sbjct: 330 IFHGKVKLD 338 >UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A5CR84_CLAM3 Length = 334 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 187/370 (50%), Gaps = 38/370 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+ ++ L +G+ V DGFD GVGM FL ++DT+RR++IN+I P WD N+ WLI Sbjct: 3 LTLIWFGVIAFLFVGYFVLDGFDFGVGMSLPFLAKDDTDRRVLINTIGPVWDLNETWLIV 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AG ALFAA+P YA FSGFY+ ++ +L +L R V F++R + RWR +D I +G Sbjct: 63 AGAALFAAFPEWYATMFSGFYLLLLAILITLILRGVSFEFRHQGASDRWRGWFDAMIVVG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP + GV F N+++GVP + YTG+ LLNP+ LL G+ ++ + + G Sbjct: 123 SVVPSFLWGVVFANVVRGVPMD----RHHDYTGSTLDLLNPYALLGGLTTLSLFLVNGLQ 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 + ++T G + R R + VT+V A VW Sbjct: 179 FAALKTDGPIRARARLLSMRVGAVTIVIAATFLVWTTLTHGSAPSG-------------- 224 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + AL V + + L + WAF + T+A + + Sbjct: 225 --------------------LVSALAAVALVGSYLANVRGRERWAFGLLAATIALAVASL 264 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 A+ PFVMP+S LT+ +A+SS TL +MTW A +P+IL Y AW YW RI Sbjct: 265 FTALHPFVMPASNDAAYGLTLENASSSPYTLTIMTWAAGFALPLILAYQAWTYWVFRKRI 324 Query: 367 TKEDIERNTH 376 T+ I + H Sbjct: 325 TRAVIAQAAH 334 >UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DWD8_SULAA Length = 344 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 139/369 (37%), Positives = 204/369 (55%), Gaps = 31/369 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L IW+LL GV L+G+A+TDGFD+G G+LT F +++ RRI+ N+IAP WDGN Sbjct: 3 MEMLTTLEGIWFLLAGVFLVGYALTDGFDLGTGILTIFTKKDEN-RRILYNAIAPVWDGN 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWLI GG LFAA+P+VYAA+FSGFY+A++LVL +L R V F+YR+K E WRN WD Sbjct: 62 EVWLIAGGGMLFAAFPVVYAASFSGFYLAILLVLWALIGRAVAFEYRNKKETPLWRNTWD 121 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W +IG+FVP L+ GVA GN + GVP + + Y G+FF LL P LL G V+ M Sbjct: 122 WIYWIGNFVPALLFGVAVGNAVIGVPIDQEG----IYRGDFFTLLRPIPLLMGFVAAFMF 177 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + G+ YL +T GE+ + A + ++ A+ + Sbjct: 178 LMHGSAYLLRKTEGEVFELAKKAAYIGFFGYVITLAITDFLM------------------ 219 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 V A N+ P+ W PA ++ +L + S+LT Sbjct: 220 --------VIVAPFLYDNYFKYPLFWIAPAFIIIGLILYFKNLVSNNYDKVIYGSTLTTV 271 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 +LT +A +P +M SS +LT+W++ SS +TL VM V ++++PI++ YT + Y Sbjct: 272 GTVLTIALASYPVLMRSSLNPEYNLTIWNSASSHITLTVMLVVTILIMPIVIFYTTYVYR 331 Query: 361 KMFGRITKE 369 G+++ E Sbjct: 332 VFKGKVSSE 340 >UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPM5_9FIRM Length = 338 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 122/369 (33%), Positives = 187/369 (50%), Gaps = 36/369 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W++L+ VL GF +GFD GVG L FL ++ ER ++ +I P WDGN+VW+IT Sbjct: 4 LTILWFILITVLFTGFFFLEGFDYGVGGLLPFLSSDEEERGEILRTITPVWDGNEVWMIT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGALFAA+P VYA FS FY+A+ L+L +L R V FD R + E W+ WD I G Sbjct: 64 AGGALFAAFPHVYATMFSAFYLALFLMLVALILRGVAFDLRGRQESRCWKRFWDGAICFG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP + GVA NL+ G+P N ++ Y G FF LL P+ ++ G+ + + + G Sbjct: 124 SVVPAFLWGVAVTNLIAGLPIN----EKMIYMGGFFDLLTPYTIVGGLAFLFVFLFHGTA 179 Query: 187 YLQMR-TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L +R L LR + A + ++ F L + D + Sbjct: 180 FLTLRLAKTSLILRCQEVALKTGAIAVIFFVLCMAMTLTYTDLFTK-------------- 225 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 P+ + ++ +L+ ++ K +F+ SS + + Sbjct: 226 -----------------PVAAVALVGAALFFVMAMLSMKLGKGKASFLLSSAAIVATTVA 268 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +FP +M SS SLT+ +A+SS TL+VMT A + VPI+L+Y +W Y+ R Sbjct: 269 FFAGLFPRLMVSSLNPAWSLTITNASSSPYTLSVMTVAAGIFVPIVLIYQSWSYYIFRKR 328 Query: 366 ITKEDIERN 374 +T +D E + Sbjct: 329 VTAKDAEEH 337 >UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 Tax=Proteobacteria RepID=C8WEN7_ZYMMN Length = 340 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 164/365 (44%), Gaps = 34/365 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W L V ++ + V DGFD+G+G+L +++ R +M+N+IAP WDGN+ W++ Sbjct: 7 WLPVVWACLAAVGILIYVVLDGFDLGIGILFA-TQKDEKHRDVMMNTIAPVWDGNETWMV 65 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L A+ Y+ Y+ +I++L +L FR V F+YR R +W Sbjct: 66 FGGAVLLGAFQTAYSVILPALYLPLIVMLLALIFRGVAFEYRVHAHSKEARCLWGAAFMG 125 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + G+ G LLQG+ + ++TG+ LNPF + GV V GA Sbjct: 126 GSTLATFCQGMVLGGLLQGI-----KTTDHHFTGSALDWLNPFSIFCGVALVIGYGLLGA 180 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L RT GEL R A+ + LVC A+ VW Y+ Sbjct: 181 GWLIWRTEGELQAYARRAARCLGSLLLVCIAVVAVWTPMLRSTYL--------------- 225 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 W + ++ + L V++ ++ + + K F+ + L Sbjct: 226 -------NTWTNSSSHAVAAVVLAVLAVLVSVIFFRSLKSGKDRTPFLCALGWFILSYLG 278 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 ++ +P+++P +T+W A+S + + V+L+P++L YT +CY G+ Sbjct: 279 LALSAWPYIVPPY------ITIWQASSPVTSQTFLLVGTVILLPLVLAYTIYCYKIFHGK 332 Query: 366 ITKED 370 +T D Sbjct: 333 VTSSD 337 >UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Propionibacterium acnes RepID=Q6ABD4_PROAC Length = 357 Score = 267 bits (682), Expect = 7e-70, Method: Composition-based stats. Identities = 132/373 (35%), Positives = 194/373 (52%), Gaps = 35/373 (9%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + L +W++L+ VL +GF +GFD GV ML FLGR+D +RR+M+N+I P WDGN+VW Sbjct: 10 HSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVW 69 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+TAGGA FAA+P YA FSG Y+ ++LVL L R V F+YRSK + WRN +DW Sbjct: 70 LLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMA 129 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFN----VDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 IGSF+P LV+GV F N ++G+ D T +F+ L PF L+ G++ V + Sbjct: 130 TIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFALIGGILFVVL 189 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 GA ++ ++T+G++H R R T+ + V +A VW + YV + Sbjct: 190 FCAHGANFVALKTMGDMHDRARKTSAKLGWIATV---VALVWALMFNIMYVTRDG----- 241 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + W I L VVL + AF+ ++L + Sbjct: 242 ---------------------RQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGI 280 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 A +I+ AM+ + + MW A+++ TL +MT A V VPI+L Y W Y Sbjct: 281 ALMIVACMFAMYGNL--GYRPSGIAFDMWIASATGRTLKIMTISACVFVPIVLAYQVWSY 338 Query: 360 WKMFGRITKEDIE 372 W R+T+E I Sbjct: 339 WVFRKRLTREAIP 351 >UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RCZ4_KANKD Length = 338 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 175/363 (48%), Gaps = 37/363 (10%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 IW L+ ++ + + DGFD+G+G+L F+ +N T++ +NS+AP WDGN+ WL+ Sbjct: 10 AMIWAGLIAFAVLAYIILDGFDLGIGILFPFI-KNKTDQETAMNSVAPIWDGNETWLVLG 68 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 GG LFA +P+ Y+ Y+ +IL+L L FR V F++ + + + ++ WD G F+GS Sbjct: 69 GGGLFAVFPLAYSVIMPALYMPIILMLLGLIFRGVAFEFHWRTKNS--QDWWDRGFFLGS 126 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 V L G+A G L+QG+ Y G ++ L PF + G+ + GAT+ Sbjct: 127 LVATLCQGIALGALVQGITV-----ADRAYAGGWWDWLTPFSITTGIALAMGYVLLGATW 181 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 L M+T GEL ++ A++AA +TL+ + +W+++ Y+ + Sbjct: 182 LNMKTTGELQKQSVQFAKIAAWLTLLFIGIISLWMVFIEQQYLHRWFDA----------- 230 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 N L +P + + R + F+++ + Sbjct: 231 ------------PNLYYLIIVPLAVLFCGFQLLNGLRKGRETSPFMYAIGLFVLSYIGIL 278 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 I+ +P ++P S+T+W A + +L + A L+PII+ YTA+ YW G++ Sbjct: 279 ISFYPNLVPP------SITIWQAAAPDDSLKFLLVGAAALLPIIIGYTAYAYWVFRGKVK 332 Query: 368 KED 370 + Sbjct: 333 ANE 335 >UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex aeolicus RepID=O67371_AQUAE Length = 366 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 107/384 (27%), Positives = 186/384 (48%), Gaps = 47/384 (12%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E+L IW++L+G ++ +A DGFD+GVG++ FL +++ E+RI++NSI P WD N+VWL Sbjct: 2 ELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 I AGGALFAA+P+ YA SG Y+ +IL+L L R +G DYR K+ + D F Sbjct: 62 ILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVFF 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDE---------------YLRLYYTGNFFQLLNPFG 169 +GS + G+ GN+++G+P + E YTG +L+P+ Sbjct: 122 LGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHMICADQDCSYTGLLINILDPYA 181 Query: 170 LLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGY 229 LL +++V + GA Y T G+L R + A+ + + + + + M Sbjct: 182 LLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPLL 241 Query: 230 VVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAA 289 + N+ ++ + +V + I+ K + Sbjct: 242 IK--------------------------NYFTRMFIFPALPIVIVAFITIIVALNRQKYS 275 Query: 290 WAFVFSSLTLACIILTAGIAMFPFVMPSSTM------MNASLTMWDATSSQLTLNVMTWV 343 AF S+ + I A +++P ++PS S+T++++ SS+ TL M + Sbjct: 276 LAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVFNSASSEKTLLTMLII 335 Query: 344 AVVLVPIILLYTAWCYWKMFGRIT 367 A++ VP++L Y + Y +G++ Sbjct: 336 ALIGVPMVLTYKFFVYRIFWGKVK 359 >UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Bacteria RepID=Q2IFY9_ANADE Length = 349 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 129/362 (35%), Positives = 202/362 (55%), Gaps = 31/362 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++LVGVL+ G+AV DGFD+GVG+L+ F R++ ER++ + +I P WDGN+VWL+T Sbjct: 3 LNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLF-ARDEEERQVHVKAIGPVWDGNEVWLLT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P+VYA FSGFY+A++L+L +L R V ++RS+++ WR +D +G Sbjct: 62 GGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRSQLDGAAWRRGFDLAFGVG 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P +++GVA GN+L+GVP + + G+F LL+P+ +L G+VS+ M GA Sbjct: 122 SLLPAVLLGVAVGNVLRGVPVTAAQ----EWAGSFLGLLHPYPVLVGLVSLSMFTLHGAL 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L+++ G L R +A+A + Sbjct: 178 WLRLKAEGALEARMARWVPRLWGAFAATYAIATAASL----------------------- 214 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 EA P+ A+ L V + +R A AF+ SSL + +IL A Sbjct: 215 ---VEAPHLFAGALANPLFLALTLLVVASIGAIPVLSRRGAAGKAFLASSLAIVSMILVA 271 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 ++MFP ++PSS LT+++A+SS TL VM +A+V +P+++ YTA Y G++ Sbjct: 272 AVSMFPRLVPSSIDPAYDLTVYNASSSPRTLAVMLVIALVGMPLVIAYTALVYRVFRGKV 331 Query: 367 TK 368 Sbjct: 332 RP 333 >UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Bacteroidetes RepID=C7M6E4_CAPOD Length = 344 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 105/363 (28%), Positives = 175/363 (48%), Gaps = 31/363 (8%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 W++++G L+ G+A+ DGFD G G F + ERR+ +N+I P WDGN+ WL+ Sbjct: 10 PTWWFIIIGFLITGYAILDGFDFGAGAWHLFFDK-KKERRVALNAIGPVWDGNEAWLVIG 68 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 G +FA +P++YA FS +L L + FR V + R K + RWRN WD + S Sbjct: 69 GAGIFAGFPLMYAELFSAMNTPFMLFLTFIIFRAVAIEVRGKEDSDRWRNTWDTVYSVCS 128 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 V P+++GV N+LQG+P + + Y G F L P+ LL GV+++ + + G Y Sbjct: 129 IVLPVLLGVVIANVLQGLPLDEN---FQYTGGALFTFLTPYALLVGVMTLLLFMVHGGLY 185 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 L ++T G++H R A L LV F ++ M Sbjct: 186 LLLKTHGDMHHRIEKRINYAYLGFLVVFTAVAIYSMLT---------------------- 223 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 N N L PAL ++ L + AFV + LT+ ++ A Sbjct: 224 -----PHLAENIANNTALKVFPALLLLSILSVAFFMKKKDYKKAFVGTILTIVFFMVVAA 278 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 + + P + ++ S+T+++A +SQ +L +M + + P++LLYT + Y +G++ Sbjct: 279 LNLHPTFLRTTLETGNSITVYNAAASQKSLKIMLTITAIGAPLLLLYTYFAYKVFWGKVE 338 Query: 368 KED 370 ++ Sbjct: 339 IDE 341 >UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Actinomycetales RepID=D1BV47_XYLCX Length = 362 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 195/372 (52%), Gaps = 44/372 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRN-----DTERRIMINSIAPHWDGNQ 61 L +W++L+ VL G+ V +GFD GVGML R ERR++IN+I P WDGN+ Sbjct: 3 LSILWFVLIAVLWTGYLVLEGFDFGVGMLLSIFPRGTAKQKHDERRVLINTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA FSGFY+ ++L+L +L R V F+YR KI W +D Sbjct: 63 VWLLTAGGATFAAFPEWYATLFSGFYIPLLLILVALIVRVVAFEYRGKIASAVWARRFDV 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + IGS+VP ++ GVAF NL++GV +VD Y G F+ LLNPF LL G+ ++ + + Sbjct: 123 LLQIGSWVPAVLWGVAFANLVRGVQLDVDHQ----YVGGFWALLNPFALLGGLTTLVLFL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G+ +L ++T GEL LR R A +L +V VW + + A Sbjct: 179 LHGSVFLALKTDGELRLRARTFAARLSLAAVVIAGGWAVWAQVAFSVTWTWAAVAVAA-- 236 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 + + ++T + +WAF S++ + Sbjct: 237 --------------------------------LCLVGVVVTNARGRESWAFTLSAVAIVA 264 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ +M+P VMP SL++ A+S+ TL VMTWVAV+L P+++ Y +W YW Sbjct: 265 AVVLIFGSMYPDVMPG-LDGGPSLSIAAASSTPYTLTVMTWVAVILTPVVIAYQSWTYWV 323 Query: 362 MFGRITKEDIER 373 R+T D+ Sbjct: 324 FRRRLTTSDLPA 335 >UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVU2_9DELT Length = 344 Score = 260 bits (664), Expect = 8e-68, Method: Composition-based stats. Identities = 122/371 (32%), Positives = 196/371 (52%), Gaps = 31/371 (8%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L+ IW++L +L + V DGFD+G+G L F+G N+ ERRIM N+ P WDGN+VWL Sbjct: 3 ETLQVIWFILWALLWAVYFVLDGFDLGLGSLLPFIGSNEEERRIMYNAAGPFWDGNEVWL 62 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 I+AGG FAA+P VYA FS Y ++++L +L FR V F++R K+E WR WD F Sbjct: 63 ISAGGVTFAAFPKVYAVMFSALYAPLLILLFALIFRAVSFEFRGKVESGVWRGFWDLVHF 122 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 + + VP L++GV F NL G+P + + + G L+N +G+ + + M + G Sbjct: 123 LSNLVPSLLLGVTFANLFMGIPIDGEG----VFHGTLMGLVNGYGIAGAIFFLVMFMLHG 178 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 + +L +++ GEL R A+A + V L+ V + D + Sbjct: 179 SLWLAIKSQGELQTRAVASATLLWPVMLILLVAFLVLTFFNTDLF--------------- 223 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 N+ + P+L +P + + L R + A++ S++ + + Sbjct: 224 ------------NNYWSNPLLLLLPVVALAGLLGVRCMLRRGQLWKAWMCSAVYIIGVTF 271 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + MFP ++ SS A+LT ++A+SS+LTL +M VA+V+VPI+LLY W Y Sbjct: 272 FGVMGMFPRMLISSIDPTATLTAFNASSSELTLKIMLGVALVMVPIVLLYQFWVYRLFSH 331 Query: 365 RITKEDIERNT 375 ++ ED++ Sbjct: 332 SLSAEDLKDEH 342 >UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitive n=183 Tax=Proteobacteria RepID=B0VC09_ACIBY Length = 351 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 166/364 (45%), Gaps = 37/364 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++G+ ++ + V DGFD+G+G++ F+ +N ER +M+N++AP WDGN+ W++ Sbjct: 21 LSLIWVGIIGLGVLIYVVMDGFDLGIGIMFPFI-KNSQERDVMMNTVAPVWDGNETWMVL 79 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G L+AA+P+VY+ S Y+ +I ++ +L FR V F++R K T +++WD G Sbjct: 80 GGAGLYAAFPLVYSTVLSALYLPIIFMVIALIFRGVAFEFRFKAHRT--KHLWDLAFIWG 137 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + + G+ G +QG+ + + G F L F + G+ V M T G Sbjct: 138 SVLTSFLQGIILGAYIQGI-----KTENGIFAGGPFDWLTAFSIFTGIGVVAMYATLGCG 192 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T L R + L+ F ++ PL Sbjct: 193 WLILKTEKGLQQRMYELMPKLIIALLIIFGAVSLY--------------------TPLTH 232 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + + L N +P L ++ L + + + F+++ + Sbjct: 233 PEIADRWFSLPNLF---YFSPVPILVLLFVGLILSACKKQQDHKPFIYTLALVFLAFTGF 289 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I+++P ++P S+T+W A + + A++L+PII+ YT YW ++ Sbjct: 290 VISLWPNIIPP------SVTIWQAAAPHSSQMFALVGALILIPIIITYTIVSYWVFRDKV 343 Query: 367 TKED 370 D Sbjct: 344 RVGD 347 >UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyanide insensitive n=5 Tax=Legionellales RepID=Q5ZZ11_LEGPH Length = 329 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 168/363 (46%), Gaps = 37/363 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L FI+ L+G +++ + + DGFD+G+G+L F +++ER M+NSIAP WDGN+ WL+ Sbjct: 1 MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTS-SESERDKMMNSIAPVWDGNETWLV 59 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L+ A+P VY Y+ ++L+L +L FR V F++R K + R + +W+W I Sbjct: 60 FGGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRFKAK--RSKTLWNWSFSI 117 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 S + GV G +QG N L PF L G+ V G+ Sbjct: 118 SSVAATFLQGVILGAFVQGFSINESSMTIND-----PDWLTPFSLCTGIALVCGYALLGS 172 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T++ +++ G L + A+ ++ +W PL+ Sbjct: 173 TWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIW--------------------TPLH 212 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 E V +F N +L +P + ++ L F++S + C + Sbjct: 213 SEEVFHRW---YSFPNVLLLSPLPLIALMAIYLVWQNLNSGSEYKPFIYSIIIFLCSYIG 269 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I+++P+++P +T+W+A + TL + +++PI+L YT + Y+ G+ Sbjct: 270 IAISVYPYLIP------HQVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLFRGK 323 Query: 366 ITK 368 ++ Sbjct: 324 SSE 326 >UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSG2_ACIC1 Length = 348 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 174/365 (47%), Gaps = 30/365 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + + VL W+ L+G+L G+ +GFD GV ++T + +++ +RR+ +NS+ P WDGN+ Sbjct: 1 MSFGVLDTTWFSLIGLLWAGYLFLEGFDFGVALITPLVSKDEIDRRMCLNSVGPFWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI AGGA FAA+P+ YA FSGFY+A+ L+L +L R V F++R+K WR WDW Sbjct: 61 VWLIVAGGATFAAFPLWYARLFSGFYLALFLILLALIARGVSFEFRNKDHRPAWRRTWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 F+GS +PP V GVAF NL+ G+P + Y G LL+P +L G +V ++ Sbjct: 121 ANFLGSLIPPAVWGVAFTNLVVGLPLDSGG----VYRGGLAGLLHPIAVLGGAATVALVS 176 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L ++T L RTR+ A + + + Sbjct: 177 FHGANFLLLKTSSGLAHRTRSVAVPLGVAATLLTGAVVL--------------------- 215 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 V G L + A+ GV + AF + +L Sbjct: 216 -----AVALTRGKALPEALPGVVPLAMAVAGVAGVAAGTFLVARARDGAAFAATGGSLLL 270 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + MFP V P S+T+ A S TL VMT VA + P++L Y W YW Sbjct: 271 TMGAVFARMFPTVFPDFHHPAHSVTIAAAASGHYTLVVMTIVAAIFTPLVLAYQGWTYWV 330 Query: 362 MFGRI 366 R+ Sbjct: 331 FRRRL 335 >UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 Tax=Actinobacteria (class) RepID=A1R5L7_ARTAT Length = 360 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 180/371 (48%), Gaps = 38/371 (10%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E+L IW++ + VL G+ +GFD+GVGML + RN+T+RR+++N+I P WDGN+VWL Sbjct: 2 ELLPTIWFVAIAVLWTGYLFLEGFDLGVGMLMKLFARNNTDRRVLLNTIGPVWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TA GA FAA+P+ YA+ FS Y+ ++ VLA+L FR V F+YR K++ WRN WDW I Sbjct: 62 LTAAGATFAAFPLWYASLFSTLYLPLLAVLAALIFRAVAFEYRGKVDSESWRNRWDWAIA 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 IGSFV IG A G+P + + +G + + LL G V + Sbjct: 122 IGSFVAAFGIGAALALTTTGLPLDANG----DRSGGPMSWFSGYALLGGFGVVAFALVHA 177 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 +L ++T GE+ R R V ++ V V + Sbjct: 178 LAFLALKTDGEVRYRARRWFVRLVPVAVLPMFGWMVAVQF-------------------- 217 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 + P WA+ VV +L AR AF + C Sbjct: 218 --------------LSGKPWTWALVVAAVVAVVLAWRLARTGSEGRAFSALGAFIVCATA 263 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + A FP V+PS+ +LT+ +A+SS TL +M+ VA V +P+++ Y +W YW Sbjct: 264 SIFGAAFPVVIPSTIDPAFNLTISNASSSDYTLGLMSIVAAVGLPLVIAYQSWTYWVFRR 323 Query: 365 RITKEDIERNT 375 R++ I Sbjct: 324 RVSAAHIPEAH 334 >UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDJ2_BRAFD Length = 357 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 118/379 (31%), Positives = 182/379 (48%), Gaps = 38/379 (10%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGM-LTRFLGRNDTERRIMINSIAPHWDG 59 M+D VL +W+ L+ +G+ V +GFD GV M + F R R ++ +I P WDG Sbjct: 1 MLDPTVLETLWFFLIAFFFLGYFVLEGFDFGVQMNVATFWRRGTGTRGTVLRTIGPVWDG 60 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMW 119 N+VW+IT G LFAA+P YA FSGFY+A++L+L L R F +R K++ RWRN W Sbjct: 61 NEVWVITGGALLFAAFPEWYATLFSGFYLALLLLLVVLIVRVCAFKWREKVDSERWRNGW 120 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 D IG F P L+ GVAF N++ GV + + ++ T +LLNPF LL G+V V + Sbjct: 121 DVVHVIGGFAPALLWGVAFSNIVAGVSIDENRWV----TTTLLELLNPFALLGGLVFVLL 176 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 G YL ++ G L A + A LV A +W Sbjct: 177 FWLHGTLYLALKVEGRLREDANRLAGILAWPALVAGAAFLLW------------------ 218 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + + +++ + A+ + L + R + AF ++ + Sbjct: 219 ---------------YQLAHSHSALTLIPLAVAALGLLAVVPLNRQGREGLAFGATTAAI 263 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ++T +FP+V+P++ SLT+ +A+S+ TL VM V +P++L YT W Y Sbjct: 264 TGAVITLFGGLFPYVLPATNDAANSLTVANASSTGHTLTVMLVALCVFMPVVLAYTVWTY 323 Query: 360 WKMFGRITKEDIERNTHSL 378 R++ ED L Sbjct: 324 RVFRHRVSDEDSPAPGAEL 342 >UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAP6_PARUW Length = 310 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 96/336 (28%), Positives = 168/336 (50%), Gaps = 31/336 (9%) Query: 35 LTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVL 94 + + D ERR+M+NSI P WDGN+VWL+TAGGALFA +P +YA S FYV ++ +L Sbjct: 1 MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALL 60 Query: 95 ASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLR 154 ++L FR V ++RSK + WR WD +GS + ++G+ GNL++G+ + Sbjct: 61 SALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLD----GY 116 Query: 155 LYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVC 214 + G LL P+ LL G ++V + + G+ Y+ M+T GE H R R A + ++ Sbjct: 117 KEFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKAVSCIIFFIIT 176 Query: 215 FALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVV 274 +A+ + + + + F + P + I + ++ Sbjct: 177 YAITTMATLIYMPHMIEA--------------------------FRHNPFFFIIALINLL 210 Query: 275 LPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNA-SLTMWDATSS 333 K + AF+ S L + C++ I +P V+ S + SLT++++ SS Sbjct: 211 AIANIPREIYFGKDSRAFICSCLNIICLLALYAIGTYPNVIRSIDQPDVLSLTIYNSASS 270 Query: 334 QLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 TL ++ +A++ VP+++ YT Y+ G++ + Sbjct: 271 VKTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKID 306 >UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLM4_LEGLO Length = 331 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 165/366 (45%), Gaps = 39/366 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L I+ +L+ +++ + + DGFD+G+G+L F ++ ER M+NSIAP WDGN+ WL+ Sbjct: 1 MLPLIFAVLLAFIVMMYVILDGFDLGIGILFPFTS-SEKERDKMMNSIAPVWDGNETWLV 59 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L+ +P VY A Y+ ++ +L +L FR V F++R K +++ + +W+W I Sbjct: 60 FGGAILYGGFPQVYGALLPVLYIPIMFMLIALIFRGVSFEFRFKADKS--KPVWNWLFAI 117 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS GV G +QG N L PF L GV V GA Sbjct: 118 GSIAAAFFQGVILGCFVQGFSMNPQTMAITQ-----SSWLTPFSLFTGVALVSGYGLLGA 172 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T++ +++ G+L + A+ + +W PL+ Sbjct: 173 TWMIIKSSGKLQAKMVHYARGLLISVSFFLVFVSIW--------------------TPLH 212 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTI--LTARMDKAAWAFVFSSLTLACII 303 E V NF L +P + LT L+ + F++S + C Sbjct: 213 SEEVFNRWYQFPNFL---WLSPLPLITAFAIYLTWRNLSLNSNNERKPFIYSIIIFLCSY 269 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 + ++++P+++P +T+W+A + TL + +++PI+L YT + Y+ Sbjct: 270 IGIAVSVYPYLIP------HQITIWEAAAPSSTLTFILVGVAIMLPILLAYTLYAYFLFR 323 Query: 364 GRITKE 369 G+ + Sbjct: 324 GKTEEH 329 >UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 Tax=Proteobacteria RepID=Q4KA99_PSEF5 Length = 338 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 167/364 (45%), Gaps = 36/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW +++ ++ + + DGFD+G+G+L + + ER +M+N++AP WDGN+ WLI Sbjct: 8 LSLIWGVIIAFGVMMYVIMDGFDLGLGILFPLIP-DARERDVMMNTVAPVWDGNETWLIL 66 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G AL+ A+P+ Y+ Y+ +I +LA L FR V F++R K R++WDW G Sbjct: 67 GGAALYGAFPLAYSVILEALYLPLIFMLAGLIFRGVAFEFRFK-ASPEKRHIWDWAFIGG 125 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L G+ G + G+P + + G L PF L G+ + G+T Sbjct: 126 SLLATLCQGIVIGTYISGIPV-----VDRQFAGGTLDWLAPFPLFCGLGLIVAYALLGST 180 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T G L R R + A A+ VW Sbjct: 181 WLLVKTEGMLEARMRHYTRPLAFALTAVVAVLCVWTALLHP------------------- 221 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 A W + + I A+ LG+ + T R + W FVF+ + + + Sbjct: 222 ---EIANRWFSH-AHIVIFGALLVLGLAALFGLLGTLRQHHSHWPFVFTLVLVFLGYIGL 277 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 +++P ++P S+++W+A S + + + ++P+IL+YT W Y+ G++ Sbjct: 278 AFSIWPNIVPP------SISLWEAASPLSSQLFILIGTLFILPVILMYTCWSYYVFRGKV 331 Query: 367 TKED 370 D Sbjct: 332 RIGD 335 >UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Methanosarcina RepID=Q46G86_METBF Length = 347 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 107/369 (28%), Positives = 188/369 (50%), Gaps = 30/369 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +++L IW+ L V+ + + D F +G G+L F+ + +R + +S+ P W GN+ Sbjct: 5 LTHDMLAIIWFFLWCVIWGVYFIVDSFSLGAGLLVPFIATDKAQRMQIQSSVGPFWGGNE 64 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI A G FAA+P+V++ F+ Y+ M+L+L L R + +Y K E + + W Sbjct: 65 VWLILAAGGTFAAFPLVFSKMFTFLYLPMMLLLIGLIARGISIEYLHKDENPHIQKILMW 124 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 G F GS + LV+GVAF N +G+ Y G L +P+ L+ GV+ V M + Sbjct: 125 GWFAGSLLISLVLGVAFANFFKGLEIASGG----VYIGTLIGLFSPYALIGGVLFVLMSV 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 T GA ++ ++T G + ++ A+ +AL+ LV + + GI+G+ Sbjct: 181 TSGAFWINVKTEGAIAIKAGDLAKKSALIVLVLALVYLAYSFMGIEGFT----------- 229 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 N++ P L+ +P L VV +L + A+ D+ AF + L Sbjct: 230 ---------------TNYSAMPALYLLPGLAVVTAVLAVFFAKKDRIFPAFCSNLLAFLF 274 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ + +++P+++ SS + +++A SS +TL+VM A+V VPII++Y W Y Sbjct: 275 VVESGLASIYPYMLKSSVSSEYGIDIFEAASSHMTLSVMLGGALVFVPIIIIYQLWAYTL 334 Query: 362 MFGRITKED 370 +I + D Sbjct: 335 FREKIKETD 343 >UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteria RepID=Q1J2Z7_DEIGD Length = 365 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 103/368 (27%), Positives = 170/368 (46%), Gaps = 35/368 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W+ L G++ + DGFD GVG+L FL RN+ +RR +I ++ P W N+VW+I Sbjct: 3 LPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVIL 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G +FAA+P+ Y A +G Y L+L +L R V F+YR++++ RWR WD FI Sbjct: 63 AAGVIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFIT 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + +P + GV N+++G+P + G+ + F +L G+ ++ + + GAT Sbjct: 123 NLLPAFLWGVIMANMVRGLPIGEG----ARFQGSPLDAFDLFSVLGGLSTLSLFVLHGAT 178 Query: 187 YLQMR--TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 YL +R T LH R R A V + + Sbjct: 179 YLLLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSE-------- 230 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 W PA V L L + + AF + LT+ Sbjct: 231 ---------------------WLFPAGAAVNLALIWLALTLRRDRLAFAATGLTIVFSTA 269 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 T ++++P +PS+ +LT+ A S TL +++WV++ +P+I+ Y AW Y+ Sbjct: 270 TIFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQAWNYYVFRQ 329 Query: 365 RITKEDIE 372 R+ + D + Sbjct: 330 RVQERDEQ 337 >UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Acidobacteria RepID=Q1ILJ8_ACIBL Length = 349 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 106/375 (28%), Positives = 186/375 (49%), Gaps = 31/375 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +W+ +V V++ + V DGFD+G G+L F+ R D ERR++I SI P WDGN+VWL++ Sbjct: 1 MPTLWFCIVAVMVAAYVVLDGFDLGAGVLHLFVARTDEERRLIIRSIGPVWDGNEVWLLS 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG L+ A+P +YA+ FSGFY+ +++VL L R +G ++R+ I+ W+ +D + Sbjct: 61 AGGTLYFAFPQLYASGFSGFYLPLMMVLWLLMGRAIGIEFRTHIQSDVWKGFFDVVFSLS 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYT-----GNFFQLLNPFGLLAGVVSVGMII 181 S + + G A GN+++GVP D Y G +L+ + +L GV++ + Sbjct: 121 SLLLTIFFGAALGNVIRGVPLGEDRYFFEPLWTNWRVGPHPGILDWYTVLCGVIAAVTLT 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA Y+ +T G+L+ R R TA V V ++ ++ + Sbjct: 181 AHGAFYVASKTEGDLNQRCRKTAAVLWPVQVLLTIVSLIAT------------------- 221 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 L N+ P+ W IP L V + + AFV S+L + Sbjct: 222 -------TSIRPEVLANYKRWPVGWLIPILVVATLGGMFVFRKKGNDKAAFVSSALYITV 274 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 +++ A A++P V+P+ST + SLT+ +A++ L + + + + Y + Y Sbjct: 275 MLVGAVFALYPTVLPASTNPDWSLTIQNASAPTYGLTIGLVWWSIGMVFTVGYFVFVYRM 334 Query: 362 MFGRITKEDIERNTH 376 G+++ D + + Sbjct: 335 FRGKVSLSDGSDHGY 349 >UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=Proteobacteria RepID=A8GFS1_SERP5 Length = 335 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 162/364 (44%), Gaps = 36/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++++ + + V DGFD+G+G+L ++ ++ +R +M+N++AP WDGN+ WL+ Sbjct: 5 LPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWV-KDSGDRDVMMNTVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G ALF A+P+ YA + + L+L L FR V F++R K R++WD G Sbjct: 64 GGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFK-ATAEKRHIWDKAFIWG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S GV G +++G P N Y G L PF L G+ V G T Sbjct: 123 SVFATFSQGVVVGAIIKGFPVNGR-----TYAGGALDWLTPFALFCGLGLVVTYALLGCT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T G+L R A L+ A+ +W P+ Sbjct: 178 WLVMKTAGDLQARMYRLAMPLLATLLLVLAVVSIW--------------------TPIAH 217 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + L N + + L + F+ + L + + Sbjct: 218 PEIANRWFSLPNLFVLLPVPILVLLSAWGI---GHGVKNAAHYSPFLLTLLLVFLGLSGL 274 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 GI+++P ++P S+T+W A + +L M A+ ++PIIL+YT W Y+ G++ Sbjct: 275 GISIWPLLIPP------SITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWSYYVFRGKV 328 Query: 367 TKED 370 + E Sbjct: 329 SHEQ 332 >UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=Q67RR5_SYMTH Length = 342 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 183/363 (50%), Gaps = 35/363 (9%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +E+L+ IW+ L G+L + DGFD+G GML R D E+ +I S+AP WDGN+ Sbjct: 1 MSHELLQVIWFALWGLLWAIYFGLDGFDLGSGMLAGIF-REDEEQHHLIGSLAPIWDGNE 59 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNMWD 120 VW+ITAGG FAA+P +YA FS Y+ + ++L L FR V ++ ++ + W+ +W Sbjct: 60 VWVITAGGVTFAAFPKLYATMFSSLYLPLFIILFGLMFRAVAIEFYHHMDYDAGWQKIWG 119 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W + + SF+ + GVAFGN+ QG+ + Y G LLNP+GLL GV+ V Sbjct: 120 WVLSVASFLVAFLFGVAFGNIFQGMLLDAQG-----YHGTVLSLLNPYGLLTGVLFVVAF 174 Query: 181 ITQGATYLQMRTVGE-LHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 + GA++L + + + A+ LV A V+ + Sbjct: 175 LMNGASWLAHKAPDDGFRAKADTFAKRMWPAVLVVAAAWLVYTPFAT------------- 221 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + N+ P L+ +PAL VVL +LT + + A A + SLT+ Sbjct: 222 --------------RLMENYLKVPALFVVPALAVVLLVLTRVYLEKGRHALALLMGSLTV 267 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ++ A I +FP + PS SLT ++++SS TL M WV VV +P +LLY W Y Sbjct: 268 GITVVAAVIGLFPNMFPSRIDPAYSLTAFNSSSSHYTLQFMFWVVVVFLPFVLLYQIWAY 327 Query: 360 WKM 362 Sbjct: 328 RLF 330 >UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Mobiluncus RepID=C2KPN0_9ACTO Length = 387 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 125/397 (31%), Positives = 194/397 (48%), Gaps = 63/397 (15%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 +L+ +W++LV VL G+ + +G+ +G GML R +G++DTER ++ SI PHWDGN+VW Sbjct: 2 AIILQILWFILVAVLWAGYLILEGYGLGTGMLMRIIGKSDTERGQIVRSIGPHWDGNEVW 61 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+TAGGA FA+ P YA FSG Y+A+ L+L L R ++R+K++ WRN WDWG Sbjct: 62 LLTAGGATFASSPEWYAVMFSGMYLALFLILVCLIVRISAIEWRNKVDSESWRNKWDWGH 121 Query: 124 FIGSFVPPLVIGVAFGNLLQGV------------PFNVDEYLRLYYTGNFFQL------- 164 I +++ P+++G AFGNL+ G+ P DE + N L Sbjct: 122 TISAWLVPILLGTAFGNLVSGMMIAVVDPKQPFTPIPPDEIDPSKHVHNLIGLGDMPLGQ 181 Query: 165 --------LNP----FGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTL 212 +P F LL G+V + +TQGA +L ++T E+ R+ A A ALV+ Sbjct: 182 LLSLFYNVPSPINGVFNLLGGLVIASLCLTQGALFLSLKTTDEVRERSEALAPKLALVST 241 Query: 213 VCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALG 272 A+ +W + G + Sbjct: 242 ALTAVFAIWGTFAYMG-------------------------------AGFIFALIFLVIA 270 Query: 273 VVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMN-ASLTMWDAT 331 V ++ + A AF+F+S +A + +FP+VM SS SLT+W+++ Sbjct: 271 AVCLIVGLFFAFQRSIGKAFIFNSAGVAFAVAWVFAMIFPYVMKSSINTEKYSLTIWESS 330 Query: 332 SSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 ++ T VMT AV+LVP++L YT W + RI+ Sbjct: 331 ATPGTQIVMTIAAVILVPVVLGYTIWSVYMFRSRISP 367 >UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Coriobacteriaceae RepID=C8WK01_EGGLE Length = 345 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 36/376 (9%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++ + +W+LL+ VL+ G+ V DGFD+G G+L F+ + D E+ ++ SI P WDGN+ Sbjct: 1 MEITFFQGLWFLLIFVLIAGYFVLDGFDLGAGVLYPFVAKGDEEKAVVRTSIGPVWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGALFAA+P YA FSGFY+A++LVL L R V +YR +W +WD Sbjct: 61 VWLLTAGGALFAAFPAAYATTFSGFYLAVMLVLFGLIVRAVSLEYRGIDH--KWAKVWDG 118 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 F+GS +P L++GVA GN+ G+P + + L+ PF LL G++ + M + Sbjct: 119 CFFVGSLLPALLLGVAVGNIYAGIPMSANGDYTGI---PLLGLITPFTLLCGLLGLSMFL 175 Query: 182 TQGATYLQMRT--VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 QGA++L ++ +L R +V+LV F + + GI Sbjct: 176 AQGASWLALKAPKPSDLQARAAKLRFPLQIVSLVLFVAVTAYALLGIQ-----------P 224 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTAR-MDKAAWAFVFSSLT 298 A +PL V W + AL VV + ++ A+ D AF+ S Sbjct: 225 AMDPLLGAVR----------------WLLAALFVVAIVASVFFAKSKDCDLGAFIAQSGA 268 Query: 299 LACIILTAGIAMFP-FVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 A ++L +MFP FV+ S+ + ++T A SS+LTL MT + V +P++L+Y Sbjct: 269 AALLVLLLAASMFPNFVVASADSVGPAITAMSAASSELTLMWMTIITCVGLPLVLVYHVI 328 Query: 358 CYWKMFGRITKEDIER 373 Y GR+ +ED+ Sbjct: 329 IYRTFRGRVKEEDLAH 344 >UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=C2KAY6_9LACO Length = 338 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 176/369 (47%), Gaps = 34/369 (9%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 L+ +W++L+GVL GF DGFD GVGM + L N+ ER ++ +I P WDGN+VWL Sbjct: 2 SFLQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 ITAGGA+FA++P YA FSG+Y+ ++L+L L R V F++R+K +++WD + Sbjct: 62 ITAGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCA-PYQKHIWDNAMA 120 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 IGS + + GV F ++++G+P + + + +FF N F ++ G+ + G Sbjct: 121 IGSVIATFLFGVMFISMIKGMPIDAKGNI----SASFFDYFNWFSIVGGIALTLLCYLHG 176 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 Y+ ++T G + R + AQ V V + + +++ D V Sbjct: 177 LNYITIKTKGVISDRAQNYAQALYWVLYVGEVVFALLLIFQTDFMRVHPI---------- 226 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 L V + + ++K A S LTL ++ Sbjct: 227 -------------------ATLICLVLIVGFSVAAHVATFINKQGMALACSGLTLISLVA 267 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 +FP VM SS L + A+SS TL VMT +LVP IL YT W YW Sbjct: 268 LIFCGLFPRVMISSISSKYDLLIHSASSSNYTLIVMTVATCILVPCILAYTIWAYWIFRK 327 Query: 365 RITKEDIER 373 RI+ I Sbjct: 328 RISMPRIGE 336 >UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Aquificales RepID=B4U7P7_HYDS0 Length = 346 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 199/365 (54%), Gaps = 31/365 (8%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L+ +W+L+ GV LIG+++TDGFD+G F+ + + +R + NS+AP WDGN+VWLI Sbjct: 10 TLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFM-KKEYDRIALYNSVAPVWDGNEVWLI 68 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 GG LFAA+P VYAA+FSGFY+A++LVL +L R V F+YR+K E WR+ +D+ ++ Sbjct: 69 AGGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWL 128 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 G+ +P ++ GVA GN + GVP + D Y G FF LL P L G+VS M GA Sbjct: 129 GNVLPAILFGVAVGNAVVGVPIDQD----AVYHGTFFTLLRPVPLAMGLVSFFMFAMHGA 184 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 YL ++T G + + A ++ + ++ L M Sbjct: 185 AYLLLKTEGSVFEMAKKYASISVIGYVISVILTNALAM---------------------- 222 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 +EA N+ PIL+AIP + V +L + + K S L A +L Sbjct: 223 ----QEAPFLYKNYFTYPILFAIPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLN 278 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 A FP +M SS + SLT+++A+SS LTL VM V V+ +PI++ YT + Y G+ Sbjct: 279 VACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFSGK 338 Query: 366 ITKED 370 ++ E Sbjct: 339 VSGEK 343 >UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUS4_9CHLB Length = 331 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 106/363 (29%), Positives = 174/363 (47%), Gaps = 39/363 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++ + +L + +GFD G G+L F+G +D ERR +IN+I P W GN+VWL++ Sbjct: 3 LHSIWFIFIALLFTILFLLEGFDFGTGILLPFMGSDDRERRSVINTIGPFWLGNEVWLVS 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FAA+P YA+ SGFY +L+L SL FR F++RSK + + +W IF G Sbjct: 63 AGGAMFAAFPGWYASLLSGFYPLFLLMLLSLIFRGAAFEFRSKFSNPALKRVSEWIIFGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP L+ GV N + GVP + YTG +LLNPF L G S GA Sbjct: 123 SLVPALLWGVILSNFISGVPVDASGN----YTGALSKLLNPFALAGGAASALTFTLYGAL 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T G + R A+ + + + + + P Sbjct: 179 FLSLKTSGRVKERAIGIAKKLWAPATLSLMVCIACSVTVTSIKPGILPLLSLLSLAP--- 235 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 I+ + +++ AF+ ++L + L Sbjct: 236 --------------------------------VIVLLQKNRSGVAFIMTALAIIFTALAI 263 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 ++P V+ S+ SLT+++A+SS+ TL+++T VA++ P++++ YW R+ Sbjct: 264 FTNLYPRVLVSNLNPAWSLTIYNASSSEYTLSILTVVALIFTPLVIIAQCLSYWVFRERV 323 Query: 367 TKE 369 + + Sbjct: 324 STD 326 >UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 Tax=Gammaproteobacteria RepID=B2SK06_XANOP Length = 339 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 158/369 (42%), Gaps = 36/369 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M VL W+ ++G ++ + V DGF +G+G+L F +++ + +M+N+ AP WDGN Sbjct: 2 MDMATVLTVAWFAVIGFGVLMYVVLDGFVLGIGILAPF-RKDEAQLDLMMNTAAPIWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 + WL+ G L AA+P Y S Y+ ++L++ +L FR V F++R K R R +W Sbjct: 61 ETWLVLCGAGLLAAFPKAYGVILSALYLPVLLMVMALVFRGVAFEFRFKAH--RSRRLWS 118 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +GS + GV G L+QG+P D Y G + +PF +L G V Sbjct: 119 HAFAVGSILATFAQGVILGALVQGLPIKHDR-----YVGGIWGWFSPFAMLTGAALVFGY 173 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+T+L ++T G + R ++ + L L W Sbjct: 174 ALLGSTWLILKTEGHVQQLARQLSRPLTISVLTFIGLVSAW------------------- 214 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 L W + ++ + +V L T A F+ + Sbjct: 215 ---LPSLQSHVMERWFSGAHYLWLMPVPLLVAIVGFALWRATDAERSEALPFLLAMGLFV 271 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 L + M+P+++P T+W A + + + V+L+P+IL YT W Y Sbjct: 272 LGFLGLVLGMWPYLVPPVY------TIWQAAAPPSSQLFVMVGLVMLLPLILGYTVWSYH 325 Query: 361 KMFGRITKE 369 G++T + Sbjct: 326 VFRGKVTTD 334 >UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Lactobacillales RepID=B1MXQ3_LEUCK Length = 337 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 107/369 (28%), Positives = 171/369 (46%), Gaps = 33/369 (8%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 +L IW++L+GVL GF +GFD G+GM R+ +R + +I P+WD N+VWL Sbjct: 2 TILEIIWFVLIGVLWAGFFFLEGFDFGIGMQFALNARDQKDREALYQAIGPNWDANEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TAGGA FAA+P YA+ FSGFY+ + +VL SL +R V F++R + + +W+ I Sbjct: 62 VTAGGATFAAFPAWYASLFSGFYLMLFIVLLSLIYRGVSFEFREHMPTVQGTQLWERLIA 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 + SF+ P +G+ F ++ G+P + L + FF + PF L+ GV M G Sbjct: 122 LTSFLVPFFLGMIFTAMVSGMPIDARGNL----SAGFFDYVTPFSLVGGVAVSLMSYVHG 177 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 Y ++R G+L R + + L AL V + + D Sbjct: 178 LNYTRLRIDGKLRTRALKQLEYLYPILLAGEALFAVLLFFYTD----------------- 220 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 + L + + + + +L + FV S LTL +++ Sbjct: 221 -----------FIQTQTVWTLSILVVIVLTTVIGWLLAIKQKMEKLPFVLSGLTLVEVVV 269 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + +FP VM + +L + + +SS TL VMT V V +P+ L Y W +W Sbjct: 270 LLFVGLFPRVMVA-NNPLHTLNIMNTSSSTYTLKVMTIVVVTALPVTLGYQIWSFWVFRK 328 Query: 365 RITKEDIER 373 RI + Sbjct: 329 RIVSHKVVE 337 >UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax=Corynebacterium RepID=B1VE35_CORU7 Length = 321 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 177/366 (48%), Gaps = 50/366 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W+ L+ L G+ + +GF GVG+L FLGR++ R MI +I P WDGN+VWLIT Sbjct: 5 LPTLWFGLIVFLFAGYFMLEGFGFGVGLLLPFLGRDEARRSAMIRTIGPVWDGNEVWLIT 64 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGALFAA+P YA FSGFY+ + L+L L R VG ++R+K+ +WR D GI G Sbjct: 65 AGGALFAAFPAWYADMFSGFYLPLFLILLGLIVRIVGLEWRTKVNSAKWRAWCDAGIITG 124 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S++ P+V GVA NL+ G+P N + + L +P+ L+ V + G T Sbjct: 125 SWISPIVWGVAVANLVSGIPENA---------AHVYPLFHPYALVGAAALVCVFALHGLT 175 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +++++T G L + A+ ++V + +W G Sbjct: 176 FIRLKTAGVLRKEAQRFITPLAIGSIVFGGVFALWTQLG--------------------- 214 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 W L VV L ++ + WAF ++L + +++ A Sbjct: 215 -------------YGKAWTWVPLVLAVVGLLGSVAATVAQRDGWAFTATALAIVSVVVLA 261 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 AMFP M+ L +W A S+ TL +MTW V++ P +LLY + YW RI Sbjct: 262 FGAMFP-------MLWTDLDIWQAASNPYTLKIMTWAGVIVTPFVLLYQGYTYWIFRRRI 314 Query: 367 TKEDIE 372 E + Sbjct: 315 VAEPVH 320 >UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobacteria RepID=B4RAL0_PHEZH Length = 341 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 155/363 (42%), Gaps = 30/363 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++ + ++ + + DGFD+GVG+L F G + ER M++S+AP WDGN+ WL+ Sbjct: 5 LPLIWAGIIAIAVLMYVLLDGFDLGVGILFPFAG-SPAERDTMMDSVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFAA+P Y A Y+ ++++L +L R V F++R R + W G Sbjct: 64 GGGGLFAAFPAAYGALMPALYIPILIMLMALILRGVAFEFRL-RGRRRGKRFWTAAFAGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S L G G +QGV + + G F L P+ LL + GAT Sbjct: 123 SIAATLAQGFVLGGFIQGVTLREGQ-----FAGGAFDWLTPYTLLVAAGLLAGYALLGAT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +T ELH R R A ++ T A+ V + + Sbjct: 178 WLIWKTEDELHGRARRWAWLSTAATAALLAVVSVATLLVHPRIAERWGFQDGG------- 230 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 +N L AIP +G+ ++ R F+ + L Sbjct: 231 ----------INTGEILPLLAIPLVGLAGLIMVAAGLRRRSHGLPFLGAFAIFLSGYLGL 280 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + FP ++P +T A S+ L +M +L+P IL YTAW YW G++ Sbjct: 281 AVGFFPNIVP------YDMTFRQAASADNALGLMLVGVAILLPFILGYTAWVYWVFRGKV 334 Query: 367 TKE 369 + + Sbjct: 335 SAD 337 >UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Thiomonas intermedia K12 RepID=C7HZB4_THIIN Length = 341 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 39/366 (10%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + VL +W+L++G+ ++ + V DGFD+GVG+L+ F+G + R++M+ S+ WD N+ W Sbjct: 10 HHVLATVWFLIIGLFMVFYVVLDGFDLGVGVLSLFVG--ERRRKVMMASLGSIWDANETW 67 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ GG LF A+P+ Y G Y+ +IL+L R V F++ E + + W Sbjct: 68 LVVIGGTLFGAFPLAYGTVLHGLYIPIILMLLGFMLRGVSFEFH---ELSERKAFWGAMF 124 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 +GS + + G A G LL GV + Y G+ ++ L+PF ++ + V Sbjct: 125 GLGSLLATIAQGFALGGLLNGVKV-----VNGVYVGSVWEWLSPFSVIVVLGVVAGYAML 179 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 G+TYL ++T ++ Q+ A + L A+ VW + Sbjct: 180 GSTYLIIKTKDDIQAGCYQRGQLLAWIMLAVGAVVTVWTPLQFPQIFARWL--------- 230 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 N +PAL ++ ++ + + FV++ L Sbjct: 231 --------------TIPNIYFFAVLPALALLSFVMLLRALKRQAEVAPFVWTMLIFLFSF 276 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 +P+++P SLT+ A S TL M +L+P+++ Y + Y Sbjct: 277 AGLAATWYPYIVP------GSLTIDQAASDSGTLVFMLIGIGMLIPVMITYNVYQYIVFR 330 Query: 364 GRITKE 369 G+I + Sbjct: 331 GKIDPD 336 >UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=A2RMA6_LACLM Length = 331 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 34/362 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ W+++VGVL GF +GFD GVGM + ++ E I SI P WD N+VWL+T Sbjct: 4 LQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FA++P YA+ FSGFY+ + L+L L FR V F++R + + +W + + Sbjct: 64 AGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVA 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF P + G+ F ++QGVP + + T F +N ++ GV + + G Sbjct: 124 SFAIPFLFGLMFTGMIQGVPMDAKGNV----TATFTTYVNFLSVVGGVAVMLLAWLHGLN 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL ++T G+L R A V + + + D + + + Sbjct: 180 YLALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALIVIL 239 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 +V L+ R K AF+ S LT ++ Sbjct: 240 TLVAH-----------------------------LSVRSGKEMSAFLASGLTFIALVALI 270 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 +FP VM ++ S+ + +A+S+ TL MT + + ++P +L+Y W Y+ RI Sbjct: 271 FQGIFPRVMIAT-NPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGWTYYIFRKRI 329 Query: 367 TK 368 K Sbjct: 330 QK 331 >UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=53 Tax=Lactobacillales RepID=Q040K6_LACGA Length = 340 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 188/364 (51%), Gaps = 35/364 (9%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 + L+ +W+LL+G+L + F T+GFD GVGM T+FL RND E+ +M+ +I PHWDGN+VWL Sbjct: 6 DFLQLLWFLLIGLLFMIFYFTEGFDYGVGMATKFLARNDQEKHLMMETIGPHWDGNEVWL 65 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 ITAGGA+FA++ YA+ FSG+Y+ + L +L R V F++ + E +W +F Sbjct: 66 ITAGGAMFASFSDWYASLFSGYYILLFFTLFALIIRGVSFEFSAHAETEHGFRIWTSALF 125 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS + P + + FG+L+QGVP + + L + + ++NP ++AGV V + + G Sbjct: 126 WGSLLAPFFLTMMFGSLIQGVPIDAQGNMSL----SVWNIVNPLSVVAGVAGVLLCLIHG 181 Query: 185 ATYLQMRTVG-ELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 +L++R EL R + + LV + + + V + D + ++ Sbjct: 182 INFLRLRIDDPELSERAASLNEKLYLVAYLGEVVFALLVFFQTDFFKLRPISSTIITLI- 240 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 VVL + ++ +K AFV S LTL ++ Sbjct: 241 ----------------------------IVVLTAWSDISLIKNKQVAAFVTSGLTLVGVV 272 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 +FP V+ ++ SL + A +S+LTL VMT VA++L+PI L+Y W Y Sbjct: 273 GLLFNGLFPRVLIAT-DSAHSLLIKTAANSKLTLEVMTIVALILLPIALVYIIWSYVVFR 331 Query: 364 GRIT 367 RI Sbjct: 332 RRIK 335 >UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 Tax=Proteobacteria RepID=B0UGT2_METS4 Length = 347 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 162/364 (44%), Gaps = 37/364 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W +++GV + + V DGFD+G+G++ ND R M+ S+AP WDGN+ WLI Sbjct: 14 WLPLLWAVILGVAITMYVVVDGFDLGIGIMF-TRAENDNWRDRMMFSVAPIWDGNETWLI 72 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G LF + + YA Y+ M+++L +L FR + F++R K + + + +WD+ Sbjct: 73 LGGAGLFCVFSVAYAILMPALYIPMLIMLIALVFRGIAFEFRFKADTS--KRIWDYAFHY 130 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + G+ G +QG + + G + L PF L GV V GA Sbjct: 131 GSLLATFAQGIVLGAFVQGFEVGGRQ-----FAGGTWDWLTPFSLATGVGLVCGYGLLGA 185 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T+ M+T G L + R ++ + T+V A+ WV + L Sbjct: 186 TWCVMKTTGALEIWARRKSEQFLVATIVMMAIVSAWVPF-------------------LG 226 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 +++ +W + L +P L + + + F+ S + L Sbjct: 227 RQIEARWFSW----PSILALVPVPLLTAFVAYMIYRSVNDGHHTAPFLLSIVMFLLGFLG 282 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I++FP+++P S+T+W A ++ + +PI YTA+ Y+ G+ Sbjct: 283 LVISLFPYIVPP------SITIWQAANTVDSQMFALIGYAFALPITFAYTAYAYYVFRGK 336 Query: 366 ITKE 369 + KE Sbjct: 337 VAKE 340 >UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitive n=32 Tax=Proteobacteria RepID=B6IQW9_RHOCS Length = 339 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 106/362 (29%), Positives = 164/362 (45%), Gaps = 36/362 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L I+ + + + + DGFD+GVG+L + D +R +M+NS+AP WDGN+ WLI Sbjct: 8 LTLIFAGIGAFAVFMYVLLDGFDLGVGILFPWAPGGDADRDLMMNSVAPIWDGNETWLIL 67 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G ALFA +P+ YA Y+ ++L+L +L FR V F++R K + + R +WDW +G Sbjct: 68 GGAALFAGFPLAYAVLLPALYLPLLLMLIALIFRGVAFEFRFKADTS--RRLWDWSFHLG 125 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S GV G +QG + Y G F L PF ++ GV V GA Sbjct: 126 SLFATFAQGVILGGFIQGFEVQGRD-----YAGGLFDWLTPFSIMTGVALVAGYALLGAA 180 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T G L + A +A L LV A+ +W PL+ Sbjct: 181 WLVMKTDGALQDWSYRVAGLALLAVLVFIAVVSLW--------------------TPLHS 220 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + +R+ L N L +P L + R + FV + L Sbjct: 221 DAIRDRWFSLPNL---YYLSPVPLLTAAVAAALFGALRRRRETAPFVLAMGLFLLSYLGL 277 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I+++P+++P + T+WDA S + + L+P LLYTA+ YW G++ Sbjct: 278 AISLWPYLVPP------AFTLWDAASPPESQVFLLVGLAFLIPTTLLYTAFTYWVFRGKV 331 Query: 367 TK 368 Sbjct: 332 RP 333 >UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Marinomonas RepID=A6W2X5_MARMS Length = 337 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 161/360 (44%), Gaps = 33/360 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L ++L++G + + + DGFD+G+G+L + ++ ER ++ SI+ WDGN+ WL+ Sbjct: 4 LALFYFLVLGFAIFMYVLLDGFDLGIGILYPWFNQD-GERDHLMRSISHVWDGNETWLVF 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G LFAA+P YA S FY+ ++L+L +L FR V F+YR K + + R WD+ G Sbjct: 63 GGVVLFAAFPAAYAGITSTFYLPIMLMLFALIFRGVAFEYRFKSDTS--RPYWDFAFSAG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + G+ G+++QGVP VD L+ L PF +L G + A Sbjct: 121 SAIAAFCQGMLLGSIVQGVPVGVDSLSSLH-------WLTPFSILTGFAVMAGYALLAAC 173 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL M++ G + + L+T++ + VW + + Sbjct: 174 YLFMKSRGRIQKHAAKLGKQLLLITILAMVIVSVWTIASQVEIRQRW------------- 220 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 +G + + PI+ + A+ L + T + F +++ Sbjct: 221 ----FSGVNFLWLSPLPIITLVVAVLAWRDLNSHATGTVHHEGRPFWYAATLFLLGFAGL 276 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + +FP+++P LT +A S +L + + VP+I YT W Y G++ Sbjct: 277 VVGLFPYLIPR------QLTFMEAASPDSSLLFLLPGICIFVPLICTYTLWGYRVFSGKV 330 >UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMS2_SYNFM Length = 343 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 164/363 (45%), Gaps = 34/363 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++G L+ +A++DG D+GVG+L+ ++ ER +++ SI W NQ WL+ Sbjct: 8 LPEIWLAIIGFFLLYYAISDGADLGVGILS-LAATDERERGLIMGSIGSIWHDNQTWLVL 66 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LF A+P+ Y S YV ++ ++ L FR V F++R E +R +W +G Sbjct: 67 LGGMLFGAFPLFYGVLLSALYVPILCMIFGLVFRGVSFEFR---ENSRHPAVWSRCFGVG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L G A G L + + G+ NPF L + + + G+ Sbjct: 124 SLIVTLSQGFALGGL-----LGGLDVREGVFKGSVLGWANPFSCLVALGVLCGYVMLGSN 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +T G + R+ T+ A+L+TL L ++ V K Sbjct: 179 FLVFKTAGPIQARSYRTSFAASLMTLGISILVHLFTAAKYPQMVRK-------------- 224 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 L + P L ++ ++ R + + ++ + + Sbjct: 225 ---------LTTLPEAYYIAVFPVLAAFCFVMLFVSLRRKRELAPLLCNAGIILFSFIGL 275 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + M+P ++P ++++++T+ A +S+ TL M V VL+P+IL+YT + + G++ Sbjct: 276 SLGMYPDMIP--NVVSSAVTVHAAAASKDTLEFMLQVTSVLLPVILVYTGYKHRIFQGKV 333 Query: 367 TKE 369 T E Sbjct: 334 TTE 336 >UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamydiaceae RepID=Q255C4_CHLFF Length = 353 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 98/362 (27%), Positives = 165/362 (45%), Gaps = 21/362 (5%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 +L W+ ++ V + +++ DGFD+G+ + F+ R D ERR+++NSI P WDGN+VW Sbjct: 6 ASMLPIAWYAILVVAVFAYSLGDGFDLGLSTIY-FISRADEERRVLLNSIGPVWDGNEVW 64 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 LI G LFA +P Y A S FY+ + ++ FR ++RSK E T+W+ WD Sbjct: 65 LIIIFGGLFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVF 124 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 + +G GN++ G+P + ++ P+ L G + V Sbjct: 125 CVSGIAISFFLGAIVGNMILGLPMSPTTQYSSL---SWLLFFRPYAFLCGALVVSAFSIH 181 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 GAT+ M+T GELH R LV + L + G + S P Sbjct: 182 GATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLL--------LIGTTLVMIPQTKGYSFP 233 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 + + P+L + A+ + L T + AF++SS L +I Sbjct: 234 IGS---------FIGVPTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLI 284 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 L++ +FP ++ S+ S T+++A +S TL + + +V +P I+ Y + Y Sbjct: 285 LSSVALVFPNLLFSTVSSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFK 344 Query: 364 GR 365 G+ Sbjct: 345 GK 346 >UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 Tax=root RepID=C0R3J3_WOLWR Length = 340 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 166/369 (44%), Gaps = 37/369 (10%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 L IW LL+ + ++ + + DGFD+G+G+L F +D R MI+SIAP WDGN+ Sbjct: 6 SLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAP-SDKCRDHMISSIAPFWDGNET 64 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+ GG LFAA+P+ Y+ FY+ +I++L L R V F++R K E ++R +WD+ Sbjct: 65 WLVLGGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAE-GKYRRLWDYA 123 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 GS G+ G + GV N ++G F + F ++ G+ + Sbjct: 124 FHFGSLGAAFCQGMILGAFIHGVEVNGRN-----FSGGQFDWASAFSVMTGIAVIFGYAL 178 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 G+T+L M+T R A + L V Sbjct: 179 LGSTWLIMKTENITQEWARKVASYTLGFVGIFMGLVSV--------------------VT 218 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARM-DKAAWAFVFSSLTLAC 301 P E ++ + NF L++IP L L + + + F S Sbjct: 219 PFLNERIKNFWFSMPNF---YYLFSIPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFM 275 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 L GI+++P+++P T+ DA +S +L++M V + L+PIIL YT +CY+ Sbjct: 276 GYLGLGISIYPWIIP------FQYTILDAAASGPSLSLMLIVIIPLLPIILTYTGYCYYV 329 Query: 362 MFGRITKED 370 G+ E Sbjct: 330 FRGKSNYEH 338 >UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNI3_9CAUL Length = 345 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 154/363 (42%), Gaps = 27/363 (7%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW L+ V ++ + DGFD+G+G+L F ++ ER +M+N+IAP WDGN+ WL+ Sbjct: 5 LQLIWAGLIAVAVLLYVTLDGFDLGIGILFPF-AKSKEERDVMMNTIAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG L AA+P+ Y+ Y+ ++L+LA L R V F++R + R R W G Sbjct: 64 GGGGLLAAFPLAYSVLMPALYLPILLMLAGLILRGVAFEFRFRARN-RGRKFWTQMFSGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + + G+ G +QGV D + G F P+ LL V G Sbjct: 123 SILTAVAQGLVLGGFIQGVTVREDR-----FAGGPFDWFTPYTLLVAAGLVAGYALLGGA 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T LH + ++++V V V + + D Sbjct: 178 WLMMKTKDNLHGDAKRWTSISSVVVTVLLVAVSVATLLIHPRVAARWGFDLGDGFALDAS 237 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 ++ L+ ++W +R W FV + L L Sbjct: 238 VLMPLLPIPLLGLAGLALVWV--------------MSRRGSHRWPFVGAILVFLSGYLGL 283 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + P+V+P +L A + L +M V ++P+IL YT W YW G+I Sbjct: 284 AVGFAPYVVP------YALDFRQAAAPDNALGLMLVGTVAILPLILAYTGWVYWVFRGKI 337 Query: 367 TKE 369 +E Sbjct: 338 DEE 340 >UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGP9_NAKMY Length = 338 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 193/364 (53%), Gaps = 36/364 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W+++V GF V +GFD GVG L + +GR DTERR+ INSI P WDGN+VWLI Sbjct: 2 TLPTVWFVIVAFFWTGFFVLEGFDFGVGALHKVVGRTDTERRVAINSIGPFWDGNEVWLI 61 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 AG ++FAA+P YA+ FS Y+A+ L+LA+L R V F++R K WR+ W W + + Sbjct: 62 VAGASMFAAFPNWYASWFSALYLALWLLLAALIVRGVSFEFRGKFAAPAWRHTWGWTLTV 121 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + PL+IG+ G+LL G+P + +TG+F LL PFGLL G+ + + + GA Sbjct: 122 GSVLAPLLIGIGLGDLLAGLPIDAAG----DFTGSFLDLLTPFGLLLGLTLLTLSLLHGA 177 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L +RT G + R+RA + AL + +A VW++ Sbjct: 178 AFLTLRTTGPVLERSRALVRRLALPAVALVLVAAVWMV---------------------- 215 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 V+ G W P + I A LP FV +++++ ++ Sbjct: 216 --VLAAPGGWGYLAVAVPAVAVIAAAVTALPG--------RAGPATFVATAISIGALVAA 265 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + ++P ++ S+T SLT+ ++ SS +L VMT A VL P++LLY W YW R Sbjct: 266 LFVCLYPTLLVSTTDPAYSLTVTNSASSPYSLQVMTVAAAVLTPLVLLYQGWTYWVFRRR 325 Query: 366 ITKE 369 + E Sbjct: 326 LRTE 329 >UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteroidetes RepID=A5FA89_FLAJ1 Length = 358 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 178/386 (46%), Gaps = 44/386 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + F W++++ +L + V DG+D G G++ F + +++ + ++I P WD N+VWLI Sbjct: 1 MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG LF A+P +YA++FSGFY+ +I++L L FR +G + R +I W ++WD I Sbjct: 61 AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF----------------QLLNPFGL 170 S + L G+A GN+++GV + + +FF +++ F L Sbjct: 121 SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQANELGIIDWFTL 180 Query: 171 LAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYV 230 G+VSV + GA ++ +T L+ + + V + + Sbjct: 181 FLGIVSVVALTIHGANWIIYKTNSSLNPKLKKV--------------VFVLNIVLLVLVC 226 Query: 231 VKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAW 290 + + H+ P NF PILW P L V K Sbjct: 227 ISLQIWHFIEPKP------------FHNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGH 274 Query: 291 AFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPI 350 F+FS+L L + +++FP V+PS+ +N SLT+++ + + L+ + + + Sbjct: 275 GFIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYGLSAGLSWFFIALFL 334 Query: 351 ILLYTAWCYWKMFGRITKEDIERNTH 376 +++Y Y G++ +DI H Sbjct: 335 VIIYFIIQYRVFSGKM--DDIGYGEH 358 >UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomonas campestris pv. campestris RepID=Q4UWQ0_XANC8 Length = 339 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 152/367 (41%), Gaps = 38/367 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + E+++ + + ++ + V DG D+GVGML R+D +R +M SI P WDGN+ Sbjct: 5 LSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFA-ANRSDADRHLMAYSILPVWDGNE 63 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 WL+ GG+L A +P YA + YV ++++L +L R V +YR ++ R R + D Sbjct: 64 TWLVLGGGSLLAMFPSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDV 123 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + S + GV G L GV + Y GN + L PF L GV V + Sbjct: 124 VFMVASLLATFCQGVVAGTYLAGVAHRAGQ-----YAGNGREWLQPFPLFCGVALVVGYL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L R+ G+L R R A+V +V L VW+ Y + H S Sbjct: 179 LLGACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHI--S 236 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL V+ L + L R A + Sbjct: 237 VPLGTSVLG------------------------LMVAMYLLMRSRHAFLPLFAVLGVVVA 272 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++P V+P +T+ A S + VM VLVP L Y+++ ++ Sbjct: 273 TYAGVLAIVYPMVLPP------DITLAQAASPPASQGVMLLAFAVLVPCTLAYSSYGFYV 326 Query: 362 MFGRITK 368 G++ Sbjct: 327 FRGKVKP 333 >UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Rhizobiales RepID=B8ESY7_METSB Length = 335 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 90/361 (24%), Positives = 160/361 (44%), Gaps = 41/361 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + W ++ ++ + + DGFD+GVGML + ND RR M+ +IAP WDGN+ WL+ Sbjct: 1 MTEFWTAVLAFTILLYVLLDGFDLGVGMLLALMP-NDRGRRHMLAAIAPVWDGNETWLVV 59 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 LF +P+VY+ S FY+ + ++LA L R V F++R K R WD +G Sbjct: 60 TATILFGVFPLVYSILLSAFYLPVFVMLAGLILRGVSFEFREK--SPHHRAFWDSCFILG 117 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S V + G+ G L++G+P Y G F L+ F LL G GA Sbjct: 118 SLVASFIQGMMIGALVEGLPVE-----NGRYAGGPFGWLSSFALLCGAGLCVGYALLGAG 172 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +T ++ L A+ V+ + Sbjct: 173 WLTRKTTQDVQALAFGILPSLLAGVLAFLAIIFVYSLLL--------------------- 211 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 A + + P+L+ P +G+ ++ ++ R + F+ + A LT Sbjct: 212 -----DLAVMHRWRERPVLFVFPLMGIAACVIMAVSIRRRRELLPFLSGASIFAAAFLTL 266 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVA-VVLVPIILLYTAWCYWKMFGR 365 ++ +P+++P S+T+ +A + + + M W A ++++PI ++YT Y+ G+ Sbjct: 267 AVSFYPYMIP------FSVTIAEAAAPRSSQAFMFWGAGLIVLPITIIYTLVVYFVFKGK 320 Query: 366 I 366 + Sbjct: 321 V 321 >UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CTD2_CORST Length = 336 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 114/366 (31%), Positives = 176/366 (48%), Gaps = 42/366 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFL-----GRNDTERRIMINSIAPHWDGNQ 61 L +W++++ G+ V +GFD GVGML FL +D R + +I P WDGN+ Sbjct: 3 LNTVWFIIIAFFFTGYFVLEGFDFGVGMLLPFLRGESAADSDARRTAAVRAIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI AG ++FAA+P YA FSGFY+ ++L++ +L R V ++R K++ WR D Sbjct: 63 VWLIVAGASIFAAFPEWYATLFSGFYLPLLLIVTALIIRGVSLEWRVKVDTLAWRKRCDI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI +GS++P L+ GVA N++ GV F+ ++ G F LLNP GLL G + + Sbjct: 123 GIALGSYLPALLWGVAMTNIVAGVAFSSPGHVDSVIDG-FLGLLNPRGLLGGAAFLLLFA 181 Query: 182 TQGATYLQMRTVGELHLRTRATAQ-VAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 GA +L ++T + + A A+ A+ TL A+ VW+ Sbjct: 182 FHGALFLGLKTHAPVRTQVHAIARGWLAIATLAVGAIYLVWMQLN--------------- 226 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 W A + + + AF ++ + Sbjct: 227 -------------------FGKSWTWIALAAVALALVAAFAGLWSGRDRTAFFGTAAAII 267 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + L A+FP V+PS T + L ++ A++S TL +MTW AVVL P +L+ W YW Sbjct: 268 AVGLALFGALFPNVLPSVTDVAG-LDIYTASASPYTLKIMTWAAVVLAPAVLIGQGWTYW 326 Query: 361 KMFGRI 366 + RI Sbjct: 327 QFRARI 332 >UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=root RepID=B2IDR4_BEII9 Length = 337 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 99/364 (27%), Positives = 152/364 (41%), Gaps = 37/364 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++ + + + DGFD+G+G+L F R++T R M++S+AP WDGN+ WL+ Sbjct: 8 LPLIWAGILATAVGLYVILDGFDLGLGILF-FTTRDETARDDMMSSVAPFWDGNETWLVL 66 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG L AA+P+ Y+ Y+ +IL+L +L R V F++ + W WD G Sbjct: 67 GGGGLLAAFPLAYSIIMPALYIPIILMLLALILRGVAFEF--RWAAKPWHGFWDVAFAGG 124 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L G G L+QG+ + + G F +PF LL G V Sbjct: 125 STLAALAQGFVLGGLIQGITVKDN-----AFAGGPFDWFSPFALLCGFGLVAGYGLLACC 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T G L R A L + C A+ +W PL Sbjct: 180 WLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIW--------------------TPLRY 219 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + E N LW +PA L L R F Sbjct: 220 PAIAERWFSTPNIF---YLWPLPAATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGL 276 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I+ +P+++P S+ +W A + +L M +L+P+IL YT + YW GR+ Sbjct: 277 AISAYPYLVP------HSIDLWQAAGAPESLKFMLIGVSILLPVILGYTIFVYWTFRGRL 330 Query: 367 TKED 370 + Sbjct: 331 RVGE 334 >UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Cyanobacteria RepID=Q2JM63_SYNJB Length = 349 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 173/370 (46%), Gaps = 37/370 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W+ ++G+ L + + DGFD+GVG+L+ ++T R I++ S+ WD N+ WL+ Sbjct: 10 FLPQVWFFILGLFLFLYVLLDGFDLGVGILS-LTASSETRRSILMTSLGNVWDANETWLV 68 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 GG+LF ++P+ YA + Y+ +++++ L R V F++R + + +W+ + Sbjct: 69 LMGGSLFGSFPLAYATILNALYIPLVIMVVGLILRAVSFEFRENADN---KLVWNLAFGV 125 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GSF+ L G A G++ +G+ + ++ G+ + L LL + + + G+ Sbjct: 126 GSFLAALGQGFALGSVFEGIRVDEAG----HFAGSPWDWLTWRTLLVALTLIQGYVLIGS 181 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 YL ++T GEL TA +A TL+ + Sbjct: 182 AYLIVKTTGELQETYYKTATIATWTTLLGAVFITI-----------------------ST 218 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + +A A L + I AIP LG++L L + + R + V++ L A + Sbjct: 219 PIMSEQARAQLFSPPLFYIFAAIPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIG 278 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 G +FP ++P S+T+++A +S +L M L+P+IL Y + Y G+ Sbjct: 279 LGFMVFPNIIPP------SVTIYEAAASPSSLVFMLTFIGFLIPVILSYNIYNYVVFRGK 332 Query: 366 ITKEDIERNT 375 I +++ Sbjct: 333 IVVQEVAAEE 342 >UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZB4_POLSQ Length = 328 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 161/356 (45%), Gaps = 38/356 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + IW L+ +++ + + DG+D+GVG+L + R+D ER M++S+ WD N+ WL+ Sbjct: 5 ITLIWGGLLAFVVLAYIIFDGYDLGVGILIPLM-RSDQERAQMLSSV-RLWDANETWLVL 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFA +P+ Y+ F Y+ +I +L SL R V ++R + +++ +WD F+G Sbjct: 63 GGGGLFAVFPLAYSIIFPALYLPLIGMLLSLVIRGVVSEFRWQNKQSAM--IWDSLFFVG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF+ G+ G L+QG+ + Y G L PF ++ G+ GAT Sbjct: 121 SFLAACFQGMILGALVQGIQV-----VDHAYAGGPLDWLTPFSVMTGIALALGYSLLGAT 175 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T GEL + + +V + ++ + +W + Y+ + Sbjct: 176 WLVLKTDGELQNKAFSLIKVLGSLMVLMVGVVSLWTPFLKQDYLSRWFA----------- 224 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + + +P L + FV + + Sbjct: 225 ------------WPQAIYVLPVPLLLAAAIFILFRAVNRRNTWVPFVATISIFLLSYIGL 272 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 I++FP+V+P + +T+W+A + + + ++LVPIIL+YT + +W Sbjct: 273 LISIFPYVVPDT------ITLWEAAAPLSSQKFLLPGTLILVPIILIYTTYAHWVF 322 >UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SP33_HAHCH Length = 331 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 37/363 (10%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 I+ LL+ V ++ + + DGF +GVG+L+ +L + D +R I I S++ WD NQ WL+ Sbjct: 4 ALIYLLLIAVGVLMYVLLDGFSLGVGILSPWLSKAD-DRAIAIKSLSHLWDSNQTWLVFG 62 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 G LFA +P YA S Y+ +IL+L +L FR V F++ K +R WD+ GS Sbjct: 63 GVVLFAGFPKAYATVLSQLYLPIILMLIALIFRGVAFEFYFKSHTSRG--WWDFSFSFGS 120 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 + L G+ G+L+QG ++ PF L+ V V G+ + Sbjct: 121 TLATLSQGIVLGSLVQGFSLEPQPSEQIA-------WFTPFSLMTAVALVCGYALLGSCW 173 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 L ++ G L + R ++ + AL VW++ + Sbjct: 174 LVRKSSGRLQVSVRRLGIISLFAVMFFLALVSVWMLLA-------------------QPQ 214 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 V + W P+ +G+ L +L + + + Sbjct: 215 VFQRWLTWPTGLLLAPVPLLSAYVGLR--LWQMLRSGEGNDLKPLGLAMALFGLAFIGLA 272 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 MFP+++P LT+W+A + + + + V+ +PI++ Y + Y G+ Sbjct: 273 AGMFPYIIP------GQLTIWEAIAPERSTSFTLIGIVLFLPIVIAYNIYNYRVFSGKTN 326 Query: 368 KED 370 +D Sbjct: 327 TQD 329 >UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3T8_STRRD Length = 313 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 104/363 (28%), Positives = 164/363 (45%), Gaps = 54/363 (14%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L W+ ++ L G+ V +GFD GVG+L L RN+ ER+ ++ +I P WDGN+VWLIT Sbjct: 3 LTTFWFAVIAFLWTGYFVLEGFDFGVGLLAPALSRNEAERKQVLGTIGPVWDGNEVWLIT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A GA+FAA+P YA S FY+ + LVL L R +G ++R K+ + R D GI +G Sbjct: 63 AVGAMFAAFPAWYAGLLSEFYLPVTLVLVGLIVRGIGLEWRGKVHHSSDRAWCDLGILVG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P + G F +LL L+ GV S+ + + GA Sbjct: 123 SALPAFLWGAVFADLLHDSAIA--------------------ALVGGVFSLSLCVLHGAV 162 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ ++T G + R R TA V T + + Sbjct: 163 FVTLKTSGPVRARARRTAMV---------------------------TSAVALPAAVVAL 195 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + AG + ++ P LWA + I + WAF ++ ++A + Sbjct: 196 SNIPAAGTAVADWTAAPWLWACALTAMAALAAGIALTWRGRDGWAFAATASSIALGSIAL 255 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 A++P +P LT+ +A S TL ++TW+ ++ +P +L Y AW YW R+ Sbjct: 256 FGALWPAPLPG-------LTVAEAASGPYTLGMLTWIGLIALPFVLGYQAWSYWVFRKRL 308 Query: 367 TKE 369 E Sbjct: 309 VAE 311 >UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XPN4_9CORY Length = 334 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 40/366 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG-----RNDTERRIMINSIAPHWDGNQ 61 L IW+L + VL GF V +GFD GVGML F+G ND R +++I P WDGN+ Sbjct: 3 LNTIWFLGIAVLFAGFFVLEGFDFGVGMLLPFVGGDTPEDNDRRRTAQVSTIGPLWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TA A+FAA+P YA SGF+ +L+L L R V ++R K + +WR D Sbjct: 63 VWLVTAAAAIFAAFPEWYATLLSGFFFLFVLILVGLIVRGVSLEWRVKGKTAQWRRRCDI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 G GS++P + G+ F NL+ GVP N D+ +T F L NP GL G+ V + Sbjct: 123 GTTFGSYLPAFLWGLIFTNLVAGVPLN-DKGRISSFTDGFVGLFNPLGLAGGLAFVLLFA 181 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA ++ ++ L R R A +L V Sbjct: 182 LHGAIFVALKAHEPLRGRARTLALRWLAAPTAIVSLLYV--------------------- 220 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 WL N W A+ + I ++ +AF +++ +A Sbjct: 221 ------------VWLQNVAGAQWTWIAVAVAALGIAAAIGATFANRDGFAFAATTIAIAA 268 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + + ++FP V+ S+ + ++ A S+ TL +M+W ++++P +++ AW +W Sbjct: 269 VCVVLFGSLFPDVIRST-SAHPGWDIYSAASNPYTLRIMSWAGIIILPAVIVAQAWSFWS 327 Query: 362 MFGRIT 367 R+ Sbjct: 328 FRQRVK 333 >UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHD0_9ACTN Length = 354 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 121/382 (31%), Positives = 193/382 (50%), Gaps = 43/382 (11%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 VL IW++L+ VL+ G+ V DGFD+G G+L+ F+ + D E+ ++ S+ P WDGN+VWL Sbjct: 2 TVLGIIWFILIFVLIAGYFVLDGFDLGAGVLSPFVAKTDEEKALLRRSVGPVWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TAGGALFAA+ YA FSGFY+A+ILVL L R + +Y + + W+ W+ F Sbjct: 62 LTAGGALFAAFAPAYATTFSGFYLAIILVLMGLIVRAISLEYSANETKPGWKKAWNALFF 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 +GS +P L+ GVA GN+ G+P N + L+ PF LL G++ + M I QG Sbjct: 122 VGSLLPALLFGVAIGNVYAGIPMNANGDYVGI---PLLGLVTPFTLLCGLLGLSMFILQG 178 Query: 185 ATYLQMRTV--GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 A++L ++ + +R R + A++ +V FAL V+ + I +V Sbjct: 179 ASWLALKAPEGSAMAVRARMARRTFAILAIVFFALVTVYALVIIKPEMVGGL-------- 230 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAW-AFVFSSLTLAC 301 + + A L V + T + A +KA+ F+ SS+ Sbjct: 231 -------------------SILRIAFAVLFVAMLAATFMKATDEKASLVVFLASSVACFA 271 Query: 302 IILTAGIAMFPFVMP----------SSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPII 351 ++ G ++FP ++ ++ A++T+ A S LTL M + V +P + Sbjct: 272 LVALLGASLFPNLVVAGAGDPFNLFATAASGANITIETAASEDLTLAWMLGITCVGLPFV 331 Query: 352 LLYTAWCYWKMFGRITKEDIER 373 LLY Y G++TKED Sbjct: 332 LLYHFLVYRTFAGKLTKEDASE 353 >UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7C6_9DELT Length = 337 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 154/371 (41%), Gaps = 38/371 (10%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L W+ ++ +LL + TDG+D+G G+L + R IM SI W N Sbjct: 1 MDGQISLADAWFGILALLLWLYVFTDGYDLGAGILCLHEA-DPVHREIMAESIDGVWHAN 59 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Q WL+ GG LF A+P+VY + Y+ +L ++ R +G +YR K + + W Sbjct: 60 QTWLVLLGGVLFGAFPLVYGTVLAALYLPAGFLLFAIMARGIGLEYRMKADN---KLPWS 116 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 GS L G G +LQG+ F+ L++ G F +PF +L + + Sbjct: 117 RLFGWGSVAVTLAHGFLLGGVLQGMDFD-----GLHHAGGAFDWFSPFTILVAATFLCLY 171 Query: 181 ITQGATYLQMRTVGELHLRTRATA-QVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 GA +L +T G L ++R + + A + LAG + G G++V Sbjct: 172 AFLGAAWLVWKTEGPLQHQSRIWSVRYGAATVGMLVLLAGYIALDGRLGFLVGRPGQGGL 231 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + + V +I + V+ +L L Sbjct: 232 GA----------------------FFILSLVVAVFCAAFSIRSIGKGGEVLPLVWCALML 269 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 + + G +++P ++P LT+ A + L L +M W ++P+I LY A+ + Sbjct: 270 VAVFVAFGGSLYPLIVPPR------LTIEQAAAPPLMLKIMLWTVGSMLPVIFLYNAYHF 323 Query: 360 WKMFGRITKED 370 + G++ ED Sbjct: 324 RLVRGKVRLED 334 >UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0L6_SLAHD Length = 346 Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats. Identities = 116/361 (32%), Positives = 181/361 (50%), Gaps = 23/361 (6%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 IW++LV VL+ G+ + DGFD+G G+L+ F+ +ND E+ ++ +I P WDGN+VWL+T Sbjct: 5 AIIWYVLVFVLIAGYFILDGFDLGAGVLSPFIAKNDEEKLTLMKAIGPVWDGNEVWLLTG 64 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 GGALFAA+ YA FSGFY+A+ILVL L R V ++ + + WR +W FIGS Sbjct: 65 GGALFAAFAPAYATTFSGFYLAIILVLMGLIIRAVSVEFAA--HDPAWRKLWFVLFFIGS 122 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 +P L+ GVA GN+ G+P + L+ PF LL G++ + M I QGA + Sbjct: 123 LLPALLYGVAVGNIYAGIPMDAAGNYIGV---PLIGLVTPFTLLCGLLGLTMCILQGACW 179 Query: 188 LQMRT--VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 L ++ GEL R R + A+V +V FAL ++ ++ I + + Sbjct: 180 LSVKAPLEGELLARARGLRRPVAIVAIVLFALVTLYALFIIKPELAAGLGVLRILFALVV 239 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + V + + + A L+ +L SS+ ++ Sbjct: 240 VAALVFVLLKAVQPEASDLTIFLVASVACFALVGLLA------------SSMFPTFVVSG 287 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +G + PF+ + A++T DA S LTL M + V +P++LLY Y GR Sbjct: 288 SGDPLTPFM---TATEGAAITAADA-SGDLTLKWMFGITCVALPLVLLYHFLVYRTFAGR 343 Query: 366 I 366 + Sbjct: 344 L 344 >UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MEL0_ENTS8 Length = 340 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 150/363 (41%), Gaps = 44/363 (12%) Query: 13 LLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALF 72 + ++ + + DG D+GVG+L F ++ R+ M S+ P WDGN+ WL+ GAL Sbjct: 17 GALAAGVLIYVLLDGADLGVGLLAPF--QSPQARQQMNISLLPVWDGNETWLVLTAGALL 74 Query: 73 AAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPL 132 A +P+ ++ +S Y+ + ++L ++ R V +YR ++D GS++ L Sbjct: 75 AMFPVAFSILYSALYLPVYIMLLAMIVRGVAIEYRHLRP-----RLFDALFIAGSWLTSL 129 Query: 133 VIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRT 192 G G ++G+ N +TG L+PF + + GA +L R Sbjct: 130 SQGATMGAWVEGITHN-----GATFTGGPMDWLSPFSVFCAMALSVGYALLGACWLIWRC 184 Query: 193 VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREA 252 GEL+ R A AL+T A VW + + Y + + ++ Sbjct: 185 EGELNAWARRQAMWLALLTAALLAGLLVWTVQLNETYRLHLQLWRWSGP----------- 233 Query: 253 GAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFP 312 + A+G++ L ILT R + + L +A+FP Sbjct: 234 ---------------LVAVGLLAFLGVILTLRQRRDFLPLAMTLLLFITAFGGMLLAVFP 278 Query: 313 FVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIE 372 F++P +L + A + T +M V VPI L+Y +W +W G+I E Sbjct: 279 FILPP------NLLLIQAAAPPATQKLMLIAFGVFVPITLIYNSWGFWVFRGKIHAAREE 332 Query: 373 RNT 375 Sbjct: 333 ERH 335 >UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C9B8_9PLAN Length = 346 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 83/359 (23%), Positives = 164/359 (45%), Gaps = 32/359 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +W +L+ +++ + V DGFD+GVG+L + R+ +E++ +I SIAP WDGN+VWLI Sbjct: 1 METVWLILLVLMIATYIVLDGFDLGVGVLHLLIARDRSEQKQIIQSIAPVWDGNEVWLIA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG + A+P ++ FSGFY+ + +V+ L FR + + + ++ W + W+ +F+ Sbjct: 61 AGGTMMMAFPGFLSSMFSGFYLPLTMVVWLLIFRAISIELPHYLSDSLWIHFWNLMLFVA 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYT-----GNFFQLLNPFGLLAGVVSVGMII 181 S + +++G A N+ +GVP + G +L+ + +L+GV S ++ Sbjct: 121 SGLLIIILGAAMANIYRGVPLDATGSFFEPLWTNFRIGPPTGILDWYTILSGVTSATFLL 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L +T G + R A ++ + + Y Sbjct: 181 HHGALWLVAKTDGRVQQHARQAATWLWTGSIGLTLVIFIASWYVQPLAR----------- 229 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 +F+ TP +P V+ L + +K AF+ S L + Sbjct: 230 ---------------TSFSETPWKIILPLAAVLSLLASGYLRWKNKNMPAFLSSGLFIYL 274 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 +I + +A++P ++P LT+++ + L + + + ++ +Y + Sbjct: 275 VIFSGAMAIYPNILPG-LNPEHHLTIYNTSPGPEKLTTTLYWWIPGILLVGVYFTILFR 332 >UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ASF7_BURM1 Length = 326 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 157/366 (42%), Gaps = 44/366 (12%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 ++ + W+ + L+ + + DGFD+GVGMLT F G R MI SIAP WDGN WL+ Sbjct: 1 MMTWFWFAELAFALVAYLMLDGFDLGVGMLTAFAGDA---RDEMIASIAPVWDGNGTWLV 57 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 AG LF A+P VY+ Y + L+LA L R V ++R K R R +WD +F+ Sbjct: 58 IAGTILFGAFPSVYSIVLPALYAPLCLMLAGLIMRGVAIEFRHKA--ARSRRIWDVLLFV 115 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + ++ GV G G+P + +L Y GN F+ +PF GV G+ Sbjct: 116 GSLLASVMQGVCVGTYAHGLPVD-----QLRYAGNGFEWCSPFSFWCGVSLALGYALLGS 170 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L ++ R A +T + + Sbjct: 171 GWLVLKGQRASQRIGRDAIARLAPITALFVL--------------------------SIL 204 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + + P+L+A+P L AR D A+ A++F++ ++L Sbjct: 205 ASTLLTETTVETRWLLHPLLFALPVAACATFLCAPAAARRDGAS-AYLFAAGGCIAMVLM 263 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVL-VPIILLYTAWCYWKMFG 364 + PF++P LT+ A + + + M W A + +P I+ YT Y G Sbjct: 264 LAASYLPFIVP------FDLTLDAAAAPRASQTFMFWGAGLFVMPFIVFYTCVAYSVFRG 317 Query: 365 RITKED 370 R++ + Sbjct: 318 RVSNDH 323 >UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJ24_DESMR Length = 336 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 36/370 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L +W+ ++ +LL + TDGFD+GVG+L + +N+ R +MI ++ W N Sbjct: 1 MEAPVTLADVWYWILALLLWLYVFTDGFDLGVGILC-LVEQNEPRRSVMIETVEGVWHAN 59 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Q WL+ GG LF A+P+VY + Y+ +L +L R +G +YR + ++ W Sbjct: 60 QTWLVMLGGVLFGAFPLVYGTVLAALYLPAGFLLFALMTRGMGIEYRPETDDP---RFWS 116 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 GS + G+ G +LQG+PF+ L Y G L PF +L V + + Sbjct: 117 QVFGWGSVAVTVAHGLLLGAILQGMPFD-----GLRYLGGPLDWLAPFPILVAVTLLCLY 171 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 A +L ++T GEL R + C L ++ + Sbjct: 172 PMFAAAWLVLKTEGELQDAARLWGIRFGSAAVACLVLLVGYIALDGSLGHLVGRPGQGGL 231 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 S P+ + + V+ L ++ + LA Sbjct: 232 S---------------------PLFVLLLVVAVLNAALYFRALGKGWEHRPLMYCAAMLA 270 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + L G+ +FP ++P + ++ D L VM +V L+P++L Y A+ Y Sbjct: 271 FVFLAFGLNLFPLIVPPAVTAASAAAPDD------MLRVMLYVIGGLMPVVLFYNAYQYR 324 Query: 361 KMFGRITKED 370 G+ + Sbjct: 325 VFRGKAVPGE 334 >UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 Tax=Bacteria RepID=Q1LCN4_RALME Length = 345 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 162/373 (43%), Gaps = 56/373 (15%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 + ++ L+G+ ++ + + DG+D+GVG+L R +D ++ MI SI P WD N+ WL+ Sbjct: 15 WMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRA--DDVDKDTMIASIGPFWDANETWLV 72 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L A+PM + + Y+ + L+LA L R V FD+R K + + W++ + Sbjct: 73 LGVGLLLTAFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPH-KPWWNFAFYA 131 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + G+ G + G +++ L F + G+ V GA Sbjct: 132 GSLLASFSQGLMLGLYITGFRYDLPNLL--------------FAVAVGLCLVAGYCLLGA 177 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 ++L M+T G L LR A+ + +T + A + P+ Sbjct: 178 SWLIMKTTGNLQLRAIYWARRSLWLTAIGVAAISI--------------------VTPMV 217 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWA----------FVFS 295 E + E L N +L IP L +VL ++ R + A FV + Sbjct: 218 SERIFEKWFSLPNII---LLAPIPLLTMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGT 274 Query: 296 SLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYT 355 ++ ++FP+++ +W A S+ +L V+ AV+++P IL YT Sbjct: 275 AVIFLLAFNGLAYSLFPYLVVDRID------IWQAASAPESLMVILIGAVIVLPTILGYT 328 Query: 356 AWCYWKMFGRITK 368 A+ Y +G+ T Sbjct: 329 AYAYRVFWGKATD 341 >UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=D0L0A7_HALNC Length = 348 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 43/370 (11%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 Y+ L FIWW+L+G+ ++ + + DG D+G G+ + F ++ ER ++ S+A WD N+ W Sbjct: 11 YQWLTFIWWVLIGLFVVLYIILDGADLGSGIYSLFNSDSE-ERGAIMASMAGTWDANETW 69 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ AGGA+F +P+ Y + F + +++VL + R V ++ R R +WDWG Sbjct: 70 LVVAGGAIFGTFPLAYGSLFHYLMIPLMVVLWGIIIRAVSLEFHHY--SKRSRALWDWGF 127 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 IGS V GV G LQG + + G L PF +L G +V Sbjct: 128 GIGSLVTTFGAGVCLGAFLQGFQMTTGQVP--TFGGGALDFLTPFSILTGFTAVIAASLA 185 Query: 184 GATYLQMRTV--GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G YL+ R E++ + + + LV + VW Sbjct: 186 GGAYLRARFDRSTEIYAKALKWTDLMFYLALVAIMITVVWTFIQ---------------- 229 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTI---LTARMDKAAWAFVFSSLT 298 +W + P WA G ++ T +R + A ++ + Sbjct: 230 -----------FSWARDKWIGPYWWAYVIAGAIVLFATWSMRKASREQRDITAMIWLASI 278 Query: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 + T ++P+ +P + +T++DA + +L+ ++ + VP++L Y + Sbjct: 279 VFINFATMMATLYPWFVPGT------MTIYDAANPSNSLSAFSYAMLGFVPVMLSYNFYQ 332 Query: 359 YWKMFGRITK 368 W R+ K Sbjct: 333 AWVFRARLHK 342 >UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C321E0 Length = 449 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 99/400 (24%), Positives = 162/400 (40%), Gaps = 33/400 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M D +L+ +W + + VL + + V +GFD GVGML R + R+ +RR+ +++I P W N Sbjct: 1 MADLTLLQSVWLVAIAVLWVLYLVLEGFDFGVGMLLRRVRRDQLDRRVALHAIGPTWAAN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VW+I A +F A+P YAA SG Y+ + +VL S+ R G + K E+ RWR W+ Sbjct: 61 EVWVIVAVVGMFGAFPGWYAAWASGLYLPLAVVLLSIVARNAGIELLGKREDERWRLRWE 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I + S V P G+ + + G+ +E + G+ ++ P+ +L G+ V + Sbjct: 121 RVIELSSTVAPFCWGLMWAATVHGLSLRGEEVV-----GSPLDVVTPYSVLGGLALVALC 175 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG--------------- 225 QGA +L +RT G + R +AA V V W Sbjct: 176 RAQGAAFLMLRTDGGVRSRAAGELALAAPVAAVVGIGFLAWTGAASTPGAAGWIALVSCG 235 Query: 226 ------------IDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGV 273 G V + + G Sbjct: 236 VALTLVALLARRGAGAGVDAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA 295 Query: 274 VLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSS 333 A A F +S + ++ + +FP + ++ A S Sbjct: 296 GGAGAGAGGAGGRSGAAPFAAASAAIGLLVASWFCVLFPDAIAAAGGGAGLALTDVAAGS 355 Query: 334 QLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIER 373 TL +MT +A ++VP++L AW YW RIT+ D+ Sbjct: 356 -YTLTLMTVLAGLMVPLLLAAQAWTYWAFRHRITRADVGE 394 >UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I116_CAMHC Length = 368 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 24/380 (6%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 YE L+ WW ++ LL G V F G ML F +++ + +++NSI W+ Sbjct: 2 YENLQIYWWFIIS-LLAGIFVFMSFVQGGQMLL-FSFKDEKNKDMIVNSIGKKWELTFTT 59 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ GGA FAA+P+ Y+ +F G Y + +L + V ++YR K + ++ + Sbjct: 60 LVMFGGACFAAFPLFYSTSFGGAYWVWMAILFCFIIQAVSYEYRKKENNFLGQKCYEIFM 119 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQ---LLNPFGLLAGVVSVGMI 180 I F+ +IGVA G F++D + + L NPF L G V Sbjct: 120 LINGFLGIFLIGVALSTFFSGSEFSLDTRNFVAWKNPLRGLEALFNPFNFLLGFTLVFAA 179 Query: 181 ITQGATYLQMRT-VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 G+ YL + + R + A V ++ F VW+ DG+ V+ Sbjct: 180 RVGGSMYLINHINEDYMRKKIRNFLKKDAAVFVIFFIAFLVWISL-KDGFCVE------- 231 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWA--FVFSSL 297 N VV + +++NF N ++ + V+ L I K+ F + Sbjct: 232 -----NGVVVTKKFHYILNFFNHYFIFFGLIISVLTALFGIYKGAFTKSIQGIWFWGIGV 286 Query: 298 TLACIILTAGIAMFPFV-MPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 A L + M V PSS +N+SL++++A+SS TL M +++ V +P +L Y A Sbjct: 287 IFAVTFLFFSLGMSGNVFYPSSADLNSSLSIYNASSSFYTLKTMAYIS-VFIPFVLAYIA 345 Query: 357 WCYWKMFG-RITKEDIERNT 375 + + M +++K+++E++ Sbjct: 346 YVWKNMDKTKMSKKELEKSN 365 >UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (CydB) n=2 Tax=Thermococcus RepID=C5A672_THEGJ Length = 331 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 110/360 (30%), Positives = 174/360 (48%), Gaps = 38/360 (10%) Query: 11 WWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 W+ LL + DGFD+G+G L + +N +R I+IN+I P WDGN+VW IT G Sbjct: 7 WFYFSAFLLGMYLAFDGFDLGIGALLALI-KNQKDRDILINTIGPVWDGNEVWFITWGAG 65 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVP 130 LFA WP +YA FS FY+A+ L+ L FR VGF++R+K + +WD + S + Sbjct: 66 LFAMWPALYATLFSTFYLAIWLLAFLLIFRAVGFEFRNKN-----KELWDKLFALVSALI 120 Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQM 190 PLV+GV GNL+ G+P + + + G+ L P+ L+ G+ + I GA + Sbjct: 121 PLVVGVVVGNLVMGIPIDANG-----FHGSLLTLFRPYPLIVGLFILFATIWHGANWGVY 175 Query: 191 RTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVR 250 +T G+L R A L+T+V L + PL E + Sbjct: 176 KTTGKLQEELRGYAFKFWLLTVVLLLLTVI----------------GMKIWAPLRFERLM 219 Query: 251 EAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAM 310 TP+ + + +V LL + + AF S L ++ +M Sbjct: 220 -----------TPLGLGLTLVILVAGLLDGHLIKKGEERLAFYISWLAFPLVVFLVYYSM 268 Query: 311 FPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKED 370 +P+ + S+T N L++ D +S LTL + V+V+L II+ YT + Y G++T+ + Sbjct: 269 YPYWVISTTDPNFKLSIHDLAASPLTLKAVLGVSVILAVIIMAYTLYVYKMFGGKVTEAE 328 >UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Burkholderia RepID=B2JUZ0_BURP8 Length = 329 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 83/364 (22%), Positives = 151/364 (41%), Gaps = 47/364 (12%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 + +L ++W+ L+G++L + VTDGFD+GVG+L+ R +R +M+ SI WD N+ Sbjct: 5 THSLLAYVWFGLLGLMLAFYVVTDGFDLGVGILSLLRAR-RADRDVMVESIGHVWDANET 63 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+ GG LF A+P+ YA Y ++ ++A L R ++R +E +WD Sbjct: 64 WLVVLGGGLFGAFPLAYAQLMQDLYSPVMALIAGLIMRGAAIEFRHSVEHG---PLWDKV 120 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 IGS + L GV G ++ G+ ++ N F ++A V Sbjct: 121 FGIGSLIAALAQGVVLGKVITGL--------------VPGEMNNVFVIVAATGVVAGYAL 166 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 GATYL +TVG + +R A ++A++T+ L + D + + Sbjct: 167 LGATYLVKKTVGMIEQWSRRLALLSAMLTVAAALLLTTATWFFSDVGSERWSRPGV---- 222 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 +L A+ +++ + + F + Sbjct: 223 -------------------MHLLIALGIAAAFAFAFIMVSLYLGSSRGPFRGAVTLFVVS 263 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 +++FP +P L + A S TL M ++ P+++ Y + Y+ Sbjct: 264 FAGLAVSLFPDFVP------GKLGIVQAASDSHTLAFMLAGIGLIFPVMIGYNLYQYYIF 317 Query: 363 FGRI 366 G++ Sbjct: 318 RGKV 321 >UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 Tax=Bacteria RepID=B2RJL6_PORG3 Length = 387 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 176/397 (44%), Gaps = 34/397 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++Y +L+ WW LV +L F G LG+++ +++M+NS W+ Sbjct: 1 MEYALLQHYWWFLVSLLGALLVFLL-FVQGGQSFLFSLGKDELTQKMMVNSTGRKWEFTF 59 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 L+T GGALFA++P+ Y+ +F G Y +L+L + V ++Y+SK R + Sbjct: 60 TTLVTFGGALFASFPLFYSTSFGGAYWVWMLILFCFIIQAVSYEYQSKHGNVWGRKTYQI 119 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTG-----------------NFFQL 164 +FI + PL++G A G F V++ +G + Sbjct: 120 LLFINGVLAPLLLGTAVSTFFTGSSFVVNKMAMFDLSGGNQIVSAWQPFNGWQLRGLEAV 179 Query: 165 LNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMY 224 LN + ++ G+ + Y E A + F LA + + Sbjct: 180 LNLWNVVLGLAVFFLARVSALLYFINNIDDESLYAAAKRRLWANTAAFLIFFLAYIAFLL 239 Query: 225 GIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPL----LTI 280 +G+ V NP++KEV E +L NF + P + A+ LGV+L L LT+ Sbjct: 240 TTEGFAV----------NPVSKEVYMEPYKYLYNFLDMPAVLAVFLLGVILVLGGIGLTL 289 Query: 281 LTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVM 340 L + W ++ +L PS+ + +SLT+ +A+SS TL VM Sbjct: 290 LRKGFKRGIWLHGTGTVLTVLALLLVAGWNDTSWYPSTYDLQSSLTIENASSSHFTLKVM 349 Query: 341 TWVAVVLVPIILLYTAWCYWKM-FGRITKEDIERNTH 376 ++V+ +L+P +L Y + + + +ITK+++E++ H Sbjct: 350 SYVS-ILIPFVLAYIFYAWRALDIRKITKKEMEQDDH 385 >UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 Tax=delta/epsilon subdivisions RepID=A7ZG70_CAMC1 Length = 374 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 166/385 (43%), Gaps = 21/385 (5%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + E L+ WW +V LL G V F G L LG+++ ++ ++INSI W+ Sbjct: 4 LSLENLQIYWWFIVS-LLGGLLVFMMFVQGGQSLIFSLGKDELKKDMLINSIGRKWELTF 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 L+ GGA FAA+P+ YA +F G Y + +L + V ++YR K + ++ Sbjct: 63 TTLVMFGGACFAAFPLFYATSFGGAYWVWLAILFCFIIQAVSYEYRKKPDNFLGARTYEI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQ---LLNPFGLLAGVVSVG 178 +FI + ++IG+A G F ++E+ + + F L NP+ L G+ Sbjct: 123 FLFINGSLGVILIGMAVSTFFSGSDFVLNEHNFVEWKTPFRGLEALSNPYLYLLGIAMFF 182 Query: 179 MIITQGATYLQMRT-VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + G YL GE R + ++ L F WV+ Sbjct: 183 LSRIGGCLYLMNNIADGEFIQNARKQLIINTVLFLPFFLGFLAWVL------------TK 230 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + +N V A + +N PI + +GV+L L+ I K+ + Sbjct: 231 DGFAYNVNGVVSLVAYKYAINLIEMPIAGILLLVGVLLVLVGIFQGAFTKSIRGIFAYGV 290 Query: 298 TLACIILTAGIA---MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLY 354 + + + PS + +++SLT+ +A+SS TL VM++V++ LVP++L Y Sbjct: 291 GVTLAVTALFLITGLNGTAFYPSFSDLSSSLTIKNASSSHYTLGVMSYVSL-LVPVVLAY 349 Query: 355 TAWCYWKMFGRITKEDIERNTHSLY 379 + + + +D +N H Y Sbjct: 350 IFIVWRAIDSKKITQDEIKNDHHAY 374 >UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Rhodopseudomonas palustris RepID=B3QK51_RHOPT Length = 341 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 88/352 (25%), Positives = 144/352 (40%), Gaps = 36/352 (10%) Query: 17 VLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWP 76 +++ + V DG D+GVG+L F R+ ++R M+ ++ P WDGN+ WL+ G L AA+P Sbjct: 19 IVVGLYVVLDGVDLGVGILFPFAPRS-SDRDAMMTTLEPFWDGNETWLVLGGMVLLAAFP 77 Query: 77 MVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGV 136 + +A FYV + L+L L R + F++RS+ +W GSF+ GV Sbjct: 78 LAFAILLPAFYVPLCLMLFGLVIRGIAFEFRSQRGSFEI--VWSMTFAAGSFIAAFCEGV 135 Query: 137 AFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGEL 196 G + G V + G F L F + G+ V GA +L +T G Sbjct: 136 VLGAFV-GQSITV---SNGAFAGGPFDWLGLFSIATGLGVVAAYGLLGACWLVWKTGGST 191 Query: 197 HLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWL 256 R L L VW + + A W Sbjct: 192 QNFGRELMLPTLLCAGGAILLVSVWTPFVKP----------------------QIAERWF 229 Query: 257 VNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMP 316 V + + L +P + V+ + +LT ++ S L + G +++P +P Sbjct: 230 V-WPDMLWLAPLPIIAVLAGIGILLTRWSEREWSPLALSLLLFITSLAGLGASVWPEAIP 288 Query: 317 SSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 +T+W A+S T ++ V++VPIIL Y + YW G+ Sbjct: 289 GV------MTIWQASSMHRTQVIVAAAIVIIVPIILAYIGYGYWLFRGKTKP 334 >UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=16 Tax=Francisella RepID=A0Q8B4_FRATN Length = 320 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 83/363 (22%), Positives = 150/363 (41%), Gaps = 48/363 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++ L+ + + DGF +G+G+L L +D ++ I + + P WDGNQ WL+ Sbjct: 3 LGLIWLAIIAFALLLYVILDGFALGMGILFPLL--DDHQKDIATSILLPTWDGNQTWLVF 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A + +P+ +A F Y++ IL++ + R + F++R K + WD FI Sbjct: 61 ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLK-SSQKGIKNWDKLFFIS 119 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SFV + G G L+ G P N F + G+ + GAT Sbjct: 120 SFVATFLQGYIVGELIVGFPHNSFYNFG-------------FSAVTGITLIFGYSLLGAT 166 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 L ++T GEL + + A++ ++ V + G + Sbjct: 167 RLILKTEGELFTKAKQLAKICCIILAVLMLVIGGMTPLYVKLP----------------- 209 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 L N IL + L ++ L+ I A + S ++ Sbjct: 210 ---------LDNLYKMAILGELFLLTIISFLVLIKVIEAKNHALPYWLSVAIFILTYISM 260 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 +FP+++P +T A +S TL A++++P++LLYT++ Y+ G+ Sbjct: 261 LTLIFPYIIP------YQITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFRGKT 314 Query: 367 TKE 369 ++ Sbjct: 315 KEK 317 >UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Tax=Prevotella RepID=C9Q1E8_9BACT Length = 408 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 161/392 (41%), Gaps = 30/392 (7%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++ YE L+ WW LV +L F G L LG+ + ERR+++NS W+ Sbjct: 28 LMSYEFLQHYWWFLVSLLGALLVFLM-FVQGANTLIFTLGKTENERRLVVNSTGRKWEFT 86 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 L+ GG FA++P+ Y+ +F G Y +++L S + V +++++K+ + Sbjct: 87 FTTLVVFGGGFFASFPLFYSTSFGGAYWLWMIILFSFVIQAVSYEFQNKLGNILGARTFQ 146 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLY-----------YTGNFFQLLNPFG 169 + I + P+++G A G F VD+ + LL+ + Sbjct: 147 TFLIINGVLGPVLLGGAVATFFNGSNFIVDKGNITTMAQPVISRWANASHGLDALLDLWN 206 Query: 170 LLAGVVSVGMIITQGATYLQMRT-VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDG 228 ++ GV + G Y+ + R R ++ +V L F Sbjct: 207 VVLGVAVFFLARVLGLLYIINNVAHAPVVTRARKQLRLCTVVFLAFFL-----------S 255 Query: 229 YVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILT----AR 284 ++V + A +P + + +L N L + +GV L I+ A Sbjct: 256 FLVHLLLKDGYAYDPQTGIISMQPLKYLHNLTTMWYLAIVLLVGVASLLYGIVRTLRDAN 315 Query: 285 MDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVA 344 ++ W + + ++L PS+T + +SLT+ +++ S+ TL M+ V+ Sbjct: 316 FNRGIWFGGVGVVLVVLVLLLCAGWNNTAYYPSNTDLQSSLTIANSSGSKFTLTAMSVVS 375 Query: 345 VVLVPIILLYTAWCYWKM-FGRITKEDIERNT 375 + L+P +L Y + + +T+E+I Sbjct: 376 L-LIPFVLAYIFVAWRAIDRKPLTEEEIMNGE 406 >UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=B4RY64_ALTMD Length = 335 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 142/364 (39%), Gaps = 40/364 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + E+L I+ L+G+ ++ +A+ DG+D+GVG+L R + R MI SI P+WD N+ Sbjct: 5 VSAEMLGNIYVGLLGLSVMLYAILDGYDLGVGVLIP--PRTEAFRDDMIASIGPYWDANE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 WL+ A G L A+P ++ Y+ +L L R V FD+R+K+ + + R WD Sbjct: 63 TWLVLAIGLLLIAFPEAHSEFLQTLYLPATFMLLGLILRGVAFDFRAKVVQVKKRK-WDL 121 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GS + L G G + G+ ++ F LLA Sbjct: 122 VFKYGSLLTTLAQGYMLGIYVTGLRTDI--------------WAQGFALLAAFGVTAAYA 167 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G+ +L ++T GEL + A+ V V + + D Sbjct: 168 FIGSCWLILKTEGELQQKAYYWARRGLGVLAVGIIAVSIANLTLHDDVRALWLSAP---- 223 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 W P+ + L + A F + L Sbjct: 224 -------------WGYVLFAIPLASFALLALCGVLLKKLPDANGKGEWLPFFIALLVFLL 270 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 I+ +PF++P +T+ +A S +L + V++VPIIL YTA Y Sbjct: 271 CFSAFAISYYPFIIP------GQMTVSEALSDANSLRFLLVGVVIVVPIILAYTAMVYKI 324 Query: 362 MFGR 365 G+ Sbjct: 325 FSGK 328 >UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3F0_STRRD Length = 332 Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 156/347 (44%), Gaps = 34/347 (9%) Query: 20 IGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVY 79 G+ V GFD G +L GR++ RR ++ ++ P++ GN+VWL+ A G LF A+P++ Sbjct: 14 TGYYVLAGFDYGAQLLLPLAGRDEGGRRRVLAALGPYFFGNEVWLVAAAGVLFGAFPLLE 73 Query: 80 AAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFG 139 SG Y+ ++L+L L R + + R +WD I G +P ++G G Sbjct: 74 GTLLSGLYLLVVLLLLGLVAGKAAVQLRGRSQSAAARRVWDVLIVAGGAIPAFLMGTLIG 133 Query: 140 NLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLR 199 LL GVP D L + +L+PF LLAGV V ++I G +L +RT GE+ R Sbjct: 134 LLLAGVPLRGDHGFVL----SPGDVLHPFVLLAGVTGVLLLIGHGGAFLSLRTTGEVASR 189 Query: 200 TRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNF 259 + A+ A W + NPL Sbjct: 190 ADSAARSA-----------LTWAAAAVVVTFAAGLALGVRPPNPL--------------- 223 Query: 260 NNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSST 319 + A L VLPL R + AF ++ +A + AG++ FP+++ SS Sbjct: 224 ----VATAATVLLAVLPLAGRRALRYGRPGRAFTATAAAVALPVPLAGLSTFPYMLVSSA 279 Query: 320 MMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 SLT + + TL +T VVL+P++L Y A+ +W GR+ Sbjct: 280 DPRHSLTFTEVAADAATLETLTAFGVVLLPVMLGYQAFGWWAFRGRV 326 >UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2 n=16 Tax=Bacteria RepID=Q03D44_LACC3 Length = 829 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 83/361 (22%), Positives = 147/361 (40%), Gaps = 35/361 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L+ I+ ++ L+ F V DG D G GM T F+G + ++R+ ++ P W GN Sbjct: 491 MPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGN 550 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 + W +TA +FAA+P Y+A SG+Y + L+L L FR V FDYR++ + WD Sbjct: 551 ETWAVTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWD 610 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W +FIGS +PP ++G+ F + + GVP + + +L PF +L G+++V Sbjct: 611 WALFIGSLMPPFLLGIIFSSTVSGVPIR-----NGFVYASMGDILTPFSILGGILAVLFS 665 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + G + + + + + L + + + + + + Sbjct: 666 LNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVIVTLLL 725 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 + V + AF S T+A Sbjct: 726 ILLVAFLGVETW-----------------------------AISQQRRRVAFWLSVGTMA 756 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 I T + +FP ++ S+T ATS ++L W+ + +++ A Y Sbjct: 757 SFIYTIFLGVFPTLIVGR-TAGTSITALTATSGPVSLLWTAWLFGFTIILMVGLQATAYH 815 Query: 361 K 361 Sbjct: 816 L 816 >UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 Tax=Bacteria RepID=A6LFA4_PARD8 Length = 383 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 159/381 (41%), Gaps = 8/381 (2%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 Y +L+ WW LV +L F G L +G+ + ++++++NS W+ Sbjct: 4 TYILLQHYWWFLVSLLGALLVFLL-FVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFT 62 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 L+T GGA FA++P+ Y+ +F G Y +L+L + V ++Y++K + + Sbjct: 63 TLVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVF 122 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVD-EYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + I P+++G A G F V+ E L NP+ L + + Sbjct: 123 LMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMPVISTWANPWHGLEAALVFWNLC 182 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 A + R + L+ + + + ++++ + A Sbjct: 183 LGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGFAV 242 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLL----TILTARMDKAAWAFVFSSL 297 NP EV + + +N PI+ A+ +GVV L TI + K W ++ Sbjct: 243 NPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAGTV 302 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 +L PS + +SLT+ ++ SS TL VM++V+ +LVP +L Y + Sbjct: 303 LTVLALLLCAGWNNTAYYPSLADLQSSLTIQNSCSSPFTLKVMSYVS-ILVPFVLAYIFY 361 Query: 358 CYWKM-FGRITKEDIERNTHS 377 + + +I ++++ H+ Sbjct: 362 AWRALDLHKINSKEMQEGGHT 382 >UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Halobacteriaceae RepID=D2S1W8_9EURY Length = 333 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 149/364 (40%), Gaps = 49/364 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+ LV +L F DGFD GVG+L + ER ++ +I P WDGN+VWL+ Sbjct: 17 LADIWFGLVFFILGMFLFLDGFDFGVGILFA-TRDDKHEREQLLAAITPFWDGNEVWLVV 75 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P VYA FS Y+ M +L +L R + + + E+ W+ W +G Sbjct: 76 FGGALFAAFPAVYANLFSRHYLLMFAILGALILRGLAPEMYEQREDEPWQKWWGRAFIVG 135 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF P +G+ N L G L+ G++ G++ V + + G Sbjct: 136 SFTAPFFLGIFIANWLLGTT----------------ALITLPGIVVGLMLVALTVVDGVA 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L+++T EL R A ++ L+ L V +N Sbjct: 180 FLRLKTRNELRDDVRTDGSRALVLYLILVVLTLGVVYITAPELRSALLSPLVVCLVVVNL 239 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + + + ++ AFV ++ + ++ Sbjct: 240 VLTG---------------------------IYAVATSSNRYYEAFVANAGLVFTLVSIV 272 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 M+P + LT+ +A S L LN+M+ A +L+P+I LY Y G I Sbjct: 273 ASLMYPHI-----DRVEGLTVEEAIVSTLPLNIMSIGAALLLPLIFLYFGVLYSVFSGPI 327 Query: 367 TKED 370 ++ Sbjct: 328 KADE 331 >UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Natrialba magadii ATCC 43099 RepID=C0G2G6_NATMA Length = 331 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 150/366 (40%), Gaps = 50/366 (13%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L +W+ LV L + + DGFD G+G+L F ++++R +++ + P W N+VWL Sbjct: 13 ESLPEVWFGLVVFALGVYLLLDGFDFGLGIL--FAEADESDREVLLAAFGPLWKANEVWL 70 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + G LFA +P VYA S Y+ + +L +L R +G R + ++ W WD Sbjct: 71 VLFGTVLFAGFPAVYANILSRHYLLVFAILLALSLRGLGSKLREERDDEEWVRFWDACFV 130 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS P ++GV + + G L L+ GV V + I G Sbjct: 131 AGSIASPFLLGVFVASWVLGEA----------------SALAIAPLVVGVTVVALSIVLG 174 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 A +L ++T GEL + A + + F L + + G A Sbjct: 175 AAFLGVKTRGELRDHVTRRGRQATGIYVGLFVLTAITLFVQYPGLHTVLLSASTA----- 229 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 AI VV + T+ A ++ AF+ ++ A ++ Sbjct: 230 ----------------------AIVVATVVFSIATVFAAFRERYHAAFLGAAGLAAAFVV 267 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 G ++P + A L++ DA S L LN+ T A + +PII+ Y + Y G Sbjct: 268 FVGTLLYPAI-----DPAAGLSVRDAVVSPLPLNMTTIFAAIFMPIIVGYFLFLYSLFSG 322 Query: 365 RITKED 370 T E Sbjct: 323 PATPEQ 328 >UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Gammaproteobacteria RepID=C6NVA4_9GAMM Length = 362 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 155/379 (40%), Gaps = 48/379 (12%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + L WW+L+G+ + + V DG D+G G+ + L N+ +R ++ S+A WD N+ W Sbjct: 11 HSSLGTFWWILLGLFFVIYIVLDGADLGAGVFSLMLE-NENDRAAVMASMAGTWDANETW 69 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ AGG +F A+P+VY A F+ + ++ L + R V F++ + + + W Sbjct: 70 LVVAGGVIFGAFPLVYGATFNYLMIPLMFALWGIISRAVAFEFHVHAKGS--KAFWGKMF 127 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRL------------YYTGNFFQLLNPFGLL 171 +GS V GVA G L G P + + +++GN L+PF + Sbjct: 128 GLGSLVAAFFAGVALGATLLGFPMSKGNAQGIQVANDPFANTVPHFSGNALSFLSPFSIW 187 Query: 172 AGVVSVGMIITQGATYLQM--RTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGY 229 G+ +V G YL + ++ + A A + + LV + VW Sbjct: 188 TGIAAVIAGGLAGTLYLCARFKQDDPIYQKAYAWATTFSYLALVAVVITLVW-------- 239 Query: 230 VVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAA 289 + ++ +A W + ++ + L ++ A + Sbjct: 240 ---------------SYAIMPDAAKWTGSGWFGWLILLLAILFSAFRMMMAHAA--HRDF 282 Query: 290 WAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVP 349 A ++ + + FP+++P + T+ + L ++T VP Sbjct: 283 PALLWCGAIVVLMWGGMWATNFPYIVPQT------WTIAAGANPANDLAILTLFMTGFVP 336 Query: 350 IILLYTAWCYWKMFGRITK 368 ++++Y A+ W R+T Sbjct: 337 VMIMYNAYQIWVFRHRLTH 355 >UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8I8_KINRD Length = 346 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 151/373 (40%), Gaps = 47/373 (12%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M + L +W+ + + + F V +GFD GVG L LGR D ER + ++ P WDGN Sbjct: 1 MTSWVDLPVLWFGVTVLAWVLFFVLEGFDFGVGFLGPLLGRTDAERGAALRTVGPVWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWL+ A G FAA+P YAA SG Y+ MI +L L R V ++R K + W D Sbjct: 61 EVWLVAAIGVTFAAFPDWYAALLSGLYLPMIALLLLLAVRGVAIEFRGKHDSASWHRRCD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLR-LYYTGNFFQLLNPFGLLAGVVSVGM 179 + S + G G L+ G+ + + + + +L P+ +L G V + Sbjct: 121 AFLATSSLLLAGTWGAVLGALVTGLALDPGGEVHGGGLSRSLAPILGPWAVLGGFAGVLL 180 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 GAT+L +RT G + R R A A +V + + Sbjct: 181 TTVHGATFLALRTTGPVRARARRLAVATAPALVVIALALFIAAGHAAVAAAAALLA---- 236 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 L + A A AF +S+ + Sbjct: 237 --------------------------------------LAAVAAWRGAEALAFAATSVAV 258 Query: 300 ACIILTAGIAMFPF----VMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYT 355 A ++ A ++PS+ +T+ A +S+ L ++T VV++P +++Y Sbjct: 259 AGSVVAVFTAHLADGSWVLLPSTLSSANDVTLRAAAASEGALQLITVAGVVVLPAVVVYQ 318 Query: 356 AWCYWKMFGRITK 368 W YW R++ Sbjct: 319 VWSYWVFRQRVST 331 >UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q1A5_NITSB Length = 372 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 167/381 (43%), Gaps = 24/381 (6%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + L+ WW +V +L + F G G L N+ ++ +++N++ W+ Sbjct: 5 MSTYTLQEYWWFIVSLLGGL-FLFLTFVQG-GQTKLGLAGNEEQKDLIVNALGRKWELTF 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 L+ GGALFAA+P+ YA +F G Y + +L S + V ++YR K + +++ Sbjct: 63 TTLVLFGGALFAAFPLFYAVSFGGAYGLWMAILFSFIIQAVAYEYRKKPNNFFGQKVYEL 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLL---NPFGLLAGVVSVG 178 +F+ V +IGVA +L G F +D+ + + G+ L NPF +L G++ V Sbjct: 123 FLFLNGTVGIFLIGVALASLFTGAAFKLDDMKHMTWLGSMRGLEALGNPFNILFGLMMVF 182 Query: 179 MIITQGATYLQ-MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + Y + EL + + + + LV F W++ Sbjct: 183 LARLNANLYFMFILDDPELVEKAKKAIKTDFAIFLVLFLAVAGWIL-------------S 229 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + + A +L NF P + +GV L L ++ A AF FSS Sbjct: 230 MSGVGYEQNKFFVVAHKYLNNFLEMPFVLGAFVVGVGLLLGAVVMALKG-VKKAFWFSST 288 Query: 298 TLACIILTAGIA---MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLY 354 + + L+ + PS + +SLT+ +++ S++TL M++V++ +VP ++ Y Sbjct: 289 AITLVGLSLLLVLGYNHTAYYPSIADIGSSLTIENSSGSRVTLITMSYVSL-MVPFVVGY 347 Query: 355 TAWCYWKMFGRITKEDIERNT 375 A+ + M + ED N Sbjct: 348 IAYVWRLMDSKPLSEDEVEND 368 >UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z1X7_9NEIS Length = 336 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 139/360 (38%), Gaps = 36/360 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L ++ L+ + L+ + + DG+D+GVG+L + ER MI SI P WD N+ WL+ Sbjct: 6 WLPVVFAGLMAISLLAYVILDGYDLGVGILLPLGAK--AERDTMIASIGPFWDANETWLV 63 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L A+P+ + Y+ + L+L L R V FD+R K + + W+ Sbjct: 64 LGVGLLLVAFPLAHGIILGELYLPVALMLLGLILRGVAFDFRVKARDPH-QPWWNAAFAA 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + L GV G L G + F LLAGV GA Sbjct: 123 GSLLAALSQGVMLGRYLTGFAPGAAAWG--------------FALLAGVGLAAAYALLGA 168 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L M+T G L R A+ A T + + K Sbjct: 169 GWLIMKTRGALQARAIGWARRALYGTGLAVLAVSIATPLASSHIAAKWF----------- 217 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 V+ + L + L+ + AL + F + + Sbjct: 218 --VLPDFLLLLPLPLGSLALFVLLALSLPRLARRQAAGNDTLCWLPFAATVGIVLLSFWG 275 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 ++FP ++ LT+W A SS L+V+ W A V++P I+ YT + Y +G+ Sbjct: 276 LAYSVFPDIVI------GRLTIWQAASSPEALSVILWGAAVVLPTIVGYTVYAYRVFWGK 329 >UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautiliaceae RepID=B9L7C1_NAUPA Length = 398 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 167/396 (42%), Gaps = 30/396 (7%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 + L+F WW++V VL G + F G G + +++ E R ++NS+ W+ Sbjct: 11 THFYLQFYWWIIVAVL-GGLFLFMTFVQG-GQTLFHVAKDEIEERGILNSLGRKWELTFT 68 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 L+ GGAL+AA+P+ Y+ +F G Y +L+L + + V ++Y ++ + + + Sbjct: 69 TLVMFGGALYAAFPLFYSVSFGGAYWVWMLILFAFVLQAVSYEYMNRTGNLIGKGAYKFF 128 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLN--------------PF 168 ++ V ++IG A G G F D R+ G N F Sbjct: 129 LYFNGVVGIVLIGAAVGTFFTGSNFTYDPATRILEWGTAKDGFNLRGLEAAIDFKHGAWF 188 Query: 169 GLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDG 228 L GV+ + GA +L L + A V A + V V ++ + Sbjct: 189 NLAMGVLVFAVARILGALWLIN------DLDEKDFADVVARLRAVVKRCFVVLLVALVIV 242 Query: 229 YVVKSTMDHYAASNPLNK-EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTIL----TA 283 T+ YA K V AG +L N + I L V+ + + Sbjct: 243 LYGLITLKGYAYDIHDPKGTVSLVAGKYLQNLLAFGAIQLIVFLVGVVLFVLGVFQSGFG 302 Query: 284 RMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWV 343 K WA ++ + I+ T PS + +SLT+ +A+ S+ TL VM WV Sbjct: 303 SSRKGIWAAGLGTVLIGIIVFTLAGLNGTAFYPSYADLQSSLTIQNASGSKYTLMVMAWV 362 Query: 344 AVVLVPIILLYTAWCYWKMF--GRITKEDIERNTHS 377 + V VP +L Y + +++M G ITKE+I + H+ Sbjct: 363 S-VAVPFVLGYIIYVWYQMKKQGPITKEEILTDDHA 397 >UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038268B Length = 226 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 8/187 (4%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W L+ + + + V DGFD+GVG+L R R M+ S+AP WDGN+ WL+ Sbjct: 14 WLPLVWAGLLALAVAMYVVIDGFDLGVGILF-TAARPGNWRDRMMLSVAPIWDGNETWLV 72 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 GG LFA + + YA Y+ +IL+L +L FR V F++R K E R R +WD Sbjct: 73 LGGGGLFAVFSVAYAILLPALYLPLILMLIALIFRGVAFEFRFKAE--RSRAVWDNAFHY 130 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS G+ G +Q + +G + L PF ++ G+ V A Sbjct: 131 GSLTATFAQGMVLGAFVQSF-----QTEGRSLSGGTLEWLTPFSVMTGIGLVSGYRLLEA 185 Query: 186 TYLQMRT 192 + M+T Sbjct: 186 NWCVMKT 192 >UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DN93_9ACTO Length = 338 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 137/345 (39%), Gaps = 32/345 (9%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + V G D G +L +LG +++ RR + ++ P + GN+VWL+ G LF A+P + Sbjct: 18 YFVLGGLDYGAQVLRLWLGGDESARRSTLGALGPFFFGNEVWLVGFAGVLFGAFPFLEGK 77 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 SG Y + +L L R + + R R +WD F G VP G+ L Sbjct: 78 LLSGMYPLFLAILIGLVVGKTAVQLRGRADTVRGRRVWDVLAFAGGLVPAWSWGMLVALL 137 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTR 201 L+GVP D ++T QL PF L G S + +T GA + Sbjct: 138 LRGVPIGADG----HFTLTGAQLGEPFVLACGAASTALFVTHGAAF-------------- 179 Query: 202 ATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNN 261 A V + + L + A A F Sbjct: 180 --------------LAARVRGAAAGAARALLPRLGVVTVVASLGAGGIGVASAVDDGFAA 225 Query: 262 TPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMM 321 A+ AL + + ++ +R A A + + L G+A +P ++ S+ Sbjct: 226 PAAAVAVGALLPIAVVAAMVASRRGWAKTAVTATGVAALVPALLPGVAHYPRLLVSTVSE 285 Query: 322 NASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 S+T+ A + TL +++ +V+VP+ILLY W +W R+ Sbjct: 286 RYSVTVSHAAADVETLKLLSAFGIVVVPVILLYQGWSWWAFRERV 330 >UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms RepID=B9P917_POPTR Length = 462 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 95/167 (56%), Positives = 118/167 (70%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +I Y++LR +WW L+GVLLI FAVTDGFD+G L R D ERR++INS+ P W+GN Sbjct: 215 LISYDILRLLWWGLLGVLLIAFAVTDGFDLGAAALLPLAARTDVERRVVINSLGPVWEGN 274 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FAAWP +YA +FSGFY+AM L +L RPV F +RSK EE WR WD Sbjct: 275 QVWLILGGGAIFAAWPQLYAVSFSGFYLAMFAALVALILRPVAFKFRSKREEPAWRARWD 334 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNP 167 + + VP L+ GVA GN+LQGVPF + +R+YY G FF LLNP Sbjct: 335 AVLCMAGVVPALIFGVALGNVLQGVPFRLAPDMRIYYEGTFFGLLNP 381 >UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Halobacteriaceae RepID=C7NNR2_HALUD Length = 338 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 145/365 (39%), Gaps = 45/365 (12%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 + L IW+ ++ L + V DGFD G+GML +D +R ++ + P WD N+VWL Sbjct: 15 DSLPEIWFGVIMFALAMYIVLDGFDFGIGMLYA-TREDDHDRETLLAAFGPIWDANEVWL 73 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 I G L AA+P VY+ + Y+ + + +L FR VG + R + E+ W+ DW Sbjct: 74 IAFGTMLLAAFPDVYSRLLADNYLIALGFVLALLFRGVGPELREQREDESWQRACDWSFV 133 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS + P + GV G+ + V ++ +L GV V + G Sbjct: 134 GGSALAPFLFGVLAGSWVFSV-----------------GAVSLPAILTGVGLVAVSAVTG 176 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 A +L +T L R +A + L + V+ G + + Sbjct: 177 AAFLAAKTGPALAGEMRDLGILATVAYLAGVVVLLAVVIVTDAGGTAGTILSIPGI---- 232 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 AI L VV L I+ A D V + + Sbjct: 233 ----------------------AIVGLSVVAGLGGIVLALRDSYRAWLVSALALPTLLSA 270 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + ++P + P++ A LT+ A S L LN+ T + ++ ++L Y + Y G Sbjct: 271 LVALLLYPAIYPATAS-GAELTVETAVVSPLALNLTTVLGFPVLVVVLWYFKFLYGVFSG 329 Query: 365 RITKE 369 I E Sbjct: 330 PIEAE 334 >UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V528_9AQUI Length = 242 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 31/264 (11%) Query: 107 RSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLN 166 +K E W+ WD ++G+ VP L+ GVA GN + G+P + Y G F QLLN Sbjct: 4 ETKKESKTWKAAWDIAYWVGNTVPALLFGVAVGNAVLGIPIDEKG----VYHGTFIQLLN 59 Query: 167 PFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGI 226 P +L G VS+ M + G YL ++T G+ + A V + + LA ++ Sbjct: 60 PTAVLMGFVSLFMYLMHGTAYLLIKTEGKPFEFAKKGAVVGFIGFVASLILADFFI---- 115 Query: 227 DGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMD 286 + +NF + P+ W P L ++ +L +D Sbjct: 116 ----------------------IAIKPTLFLNFFDYPLFWIAPFLMILGLVLYFKYLVVD 153 Query: 287 -KAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAV 345 K S LT+ +LT +A +P + SS +LT+W++ SS LTL +M + Sbjct: 154 EKYNKVIYGSILTILGTVLTIALASYPVFIHSSIDEKYNLTIWNSASSDLTLTIMLISTL 213 Query: 346 VLVPIILLYTAWCYWKMFGRITKE 369 + +P+I+ YT + Y G+++ E Sbjct: 214 IFLPLIIGYTVYVYRVFKGKVSAE 237 >UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Geobacter RepID=C6DYH0_GEOSM Length = 349 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 73/364 (20%), Positives = 125/364 (34%), Gaps = 40/364 (10%) Query: 9 FIWWLLVGVLLIGFAVTDGFDMGVGML--TRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +++ L+ +A+ G D G G+ F R +R + N+I P W+ N VWLI Sbjct: 6 ILAAMVLVAGLLMYALFGGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIF 65 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW-GIFI 125 LF A+P + F ++L L + FR F +R E + I Sbjct: 66 VIVTLFTAFPAGFGNLFIVLMTPLVLALVGINFRGAAFAFRHFGRELKKETPVSARVFEI 125 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 S + P +G+A G T F LN F LL GVV + + Sbjct: 126 ASVLTPFTLGLAVSATAAGRIVIAGRMP----TEQFSDWLNSFTLLGGVVGMAICAYLAP 181 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 Y+ +R GEL R + A L + +L Y + + Sbjct: 182 IYMTVRVTGELREDFRKESLAAGLALGILTSLMIPLAHYQAPLFAERLFNS--------- 232 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 L ++ ++T + + WA + + T+ + Sbjct: 233 ------------------WPMLFVMLAILAGVVTESLLWLRRYFWAQLIAGATIVFTMAG 274 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 A+ P ++ LT+ A + TL V + I++ + YW G Sbjct: 275 FVAALNPDILI------GQLTLRAAAAPHPTLVAFLAVLPIGALILVPSLVYLYWTFRGE 328 Query: 366 ITKE 369 + + Sbjct: 329 PSAD 332 >UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,subunit II n=5 Tax=Bordetella RepID=Q2KVX4_BORA1 Length = 348 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 70/360 (19%), Positives = 135/360 (37%), Gaps = 40/360 (11%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 + ++ L+ +L+ V DGFD+GVG+L + ER M++ ++P D N+ W + Sbjct: 19 WMPMVFMGLMLLLIAAGIVLDGFDIGVGILLQVAPA--EERGRMMSLLSPWRDANEFWPL 76 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G +A+P + A Y + L++ + R V F++R + + W +G + Sbjct: 77 LGIGLFGSAFPFAWGAIMGKLYGPLTLMVLGIVLRSVSFEFRIRASTEV-KPRWIFGFWA 135 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + + G+ G + + F L G+ +V GA Sbjct: 136 GSLLAAIGQGMVLGRIATDYQSDAGYG--------------WFSLFVGLCAVAAYALLGA 181 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L MR GEL R + A+ T V + G K + Sbjct: 182 CWLAMRVDGELQRRAASWARHGIRWTAAGMVAIAVTLGLANAGIFYKWSNA--------- 232 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 A L + + + + L + A FV L ++ Sbjct: 233 --------AHLGAAAGVWVAMLLGFVAAEMLLARLPGKADRLAWLPFVLCVLLYLLMLAG 284 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + FP+++ +T+WD + + + ++ V+ P++L++ Y +FG+ Sbjct: 285 LAYSFFPYLILD------DMTIWDGSGALGSSRLVLAGVVIGGPVVLVFNILAYRSVFGK 338 >UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Halobacterium salinarum RepID=B0R8N6_HALS3 Length = 331 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 146/365 (40%), Gaps = 51/365 (13%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 + L +W+ V L + V DGFD G+GML ++ ER + + P WD N+VW+ Sbjct: 14 DSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYA-TRTDEHERETFLAAFGPVWDANEVWI 72 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + G L AA+P VY+ + Y+ + + +L FR +G + R + E+ RW+ D+ Sbjct: 73 VAFGTMLLAAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFV 132 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS PL++G+ G L + G + +L GV V + I G Sbjct: 133 GGSVFAPLLLGMLAGRWL--------------FAGATLPV-----VLTGVGLVAVSIVTG 173 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 A +L +T L R+ A + L + V+ G + + Sbjct: 174 AAFLAAKTDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASAVLSLP------ 227 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 + A+ AL +V L + AR + + + L Sbjct: 228 --------------------VAAVVALSIVAGLGGSVLARRGRYRAWLASALALPTLLTL 267 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + ++P V P + L + +A S L LN++T + ++ ++L Y + Y G Sbjct: 268 LVAVLLYPTVYPPT-----GLLVREAVVSPLALNLVTVLGFPVLLLVLWYFKFLYGVFSG 322 Query: 365 RITKE 369 I E Sbjct: 323 PIEGE 327 >UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 Tax=Bacteroidetes RepID=C6XT47_PEDHD Length = 339 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 57/368 (15%), Positives = 123/368 (33%), Gaps = 40/368 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT--ERRIMINSIAPHWDG 59 + Y V+ F+W ++ + + G D G G++ + + R+ M +I P W+ Sbjct: 1 MIYVVIVFLWTAIL-----LYILLGGADFGAGIIELMTAKTNKAKTRKTMYKAIGPIWEA 55 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNM 118 N +WLI A LF +P +Y ++ ++ +L + R F +R+ + + + Sbjct: 56 NHMWLIIAIVILFVGFPKIYTTISVYLHIPLVCMLLGIIARGTAFVFRNYDAVKDDMQKI 115 Query: 119 WDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVG 178 + S + P +G+ + + G +D + + F LN F + G+ +V Sbjct: 116 YTPIFVYSSLITPFFLGIIAASSVSG---QIDPSANNFLSAYIFSWLNWFSVAVGIFTVS 172 Query: 179 MIITQGATYLQMRTVGE-LHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + ++ +T + A+ + + C AL + D Sbjct: 173 ICGFLATIFIIGQTDNDGDREHFVGKARRTIFIVMFCGALVFIAAYSEGIPLASWIFGDT 232 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + L+ + DK + + Sbjct: 233 PG--------------------------LIAIIAASISLLVMFYALKKDKPILLRLLAGF 266 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 + I+ A FP ++ N SL + T+ + + ++ IL + Sbjct: 267 QVTMILFAATYTHFPDIVLLKNGENLSLLTHQGQA--RTIASLGYALLIGSIFILPALVY 324 Query: 358 CYWKMFGR 365 + R Sbjct: 325 LIYIFQKR 332 >UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VWT6_DYAFD Length = 341 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 66/368 (17%), Positives = 137/368 (37%), Gaps = 40/368 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTE--RRIMINSIAPHWDG 59 + Y V+ ++W ++ + + G D G G++ F + + + R+ + ++I P W+ Sbjct: 1 MLYIVITYLWASIL-----LYLLLGGADFGAGIIELFTSQKNKQVTRKTLYSAIGPIWEA 55 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNM 118 N +WLI A LF +P++Y+ ++ + ++L + R F +R +++ Sbjct: 56 NHMWLIIAIVILFVGFPVIYSTMSVNLHIPLTVMLIGIIARGTAFTFRHYDAVVDDMQHL 115 Query: 119 WDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVG 178 ++ + SF+ PL +G+ G+ + G ++D R + F L+ F + G+ +V Sbjct: 116 YNTIFAVSSFITPLFLGIIAGSAVSG---HIDPSARSFADAYIFSWLHWFAITVGLFTVS 172 Query: 179 MIITQGATYLQMRTVGE-LHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + + YL T E LR AQ + +VC AL V + Sbjct: 173 ICGFLASVYLIGETKVEHERLRFAHKAQFFNIAAVVCGALVFVAAWFEHIPL-------- 224 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + I + + K + Sbjct: 225 ------------------IDWVFGNWIGRIAILSATLSLIWMWTLLYQGKIRLLRPLAGF 266 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 + I+LT FP ++ SLT + + T+ + W ++ +IL + Sbjct: 267 QVTMILLTTTFRHFPNIVVLKGGGYLSLT--EHAGHEKTVEALGWALLLGSILILPALFY 324 Query: 358 CYWKMFGR 365 + + Sbjct: 325 LIYSFQKK 332 >UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase subunit II n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55F87 Length = 329 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 143/339 (42%), Gaps = 43/339 (12%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGR--NDTERRIMINSIAPHWDGNQVWL 64 + IWW ++G+LL G+ G+D GVGML L R ++ +R ++ ++ P + N+VWL Sbjct: 1 MVTIWWGVLGLLLGGYFALAGYDYGVGMLLPALARSRDEAGQRRVLGAVGPFFLANEVWL 60 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + A G LF A+P + F+G YV ++L+L L RS+ E R W + I Sbjct: 61 VAAVGVLFGAFPHLEGRVFAGAYVLVVLLLLGLVTFTAAVQLRSRHPEGS-RRGWTFAIT 119 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 G+ V + G+ GNL++G+P + L NP+ +L G+ V + QG Sbjct: 120 AGALVTAVSWGLFLGNLVRGLPLDAHGRPIDD----VLALFNPYAVLWGLGFVALFCLQG 175 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 +L +R EL R R + V A+A VW + + Sbjct: 176 LVFLAVRGPAELTGRVRRLTRSLLPPVGVFLAIATVWGAFSVT----------------- 218 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 + + A+ A+ LL + R + A V L AC L Sbjct: 219 ---------------DGSWAALAVVAVAFAAYLLVLFGLRKPRLALPAV--MLLSACPAL 261 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWV 343 G+ FP V+ SS LT+ A ++ V+ W Sbjct: 262 LVGVLRFPVVLSSS--AGYQLTVEQAATTPDMTAVLGWF 298 >UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV22_9ACTO Length = 317 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 78/357 (21%), Positives = 144/357 (40%), Gaps = 49/357 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + ++++L+G + G+ G+D GVG+L R GR DTERR+++ ++ P + GN+VWL+ Sbjct: 1 MAELFYVLLGAVFAGYFALAGYDYGVGVLLRLCGRTDTERRLILGALGPFFLGNEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G L AA+P+ A +G Y A+ ++A++ RS+ T R +WD I Sbjct: 61 GLGLLLAAFPLAEGALLTGLYPALFPLIAAIVLFTAAVQIRSRA--TFARPLWDLLIVGS 118 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + + G +FG +LQG+P P ++ G ++ + GA+ Sbjct: 119 AALISFGWGASFGLVLQGMPVR----------------FGPLPIITGALTTALFTMHGAS 162 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 L +RT + R +V A Sbjct: 163 LLAVRTPDPIRGRAALIGSRMTFSAVVLVIAA---------------------------- 194 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 A N I + + L + R ++ A + + ++ A Sbjct: 195 --ALTAAVNAHAVNQPVIAAIGALALIAVILASQRLRRRNRPGLALIATGTAATLPMIIA 252 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 AM+P++ SLT+ A ++ +L+ + AV ++P++L + A +W Sbjct: 253 AAAMYPYLYVD-LDAAHSLTLTQAVAANSSLDFLLATAVPVLPVLLGFQAATWWIWR 308 >UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Streptomyces RepID=B5HKZ6_9ACTO Length = 346 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 69/346 (19%), Positives = 127/346 (36%), Gaps = 40/346 (11%) Query: 9 FIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG---RNDTERRIMINSIAPHWDGNQVWLI 65 FI W+LV + + +A G D G G G R R ++ +++AP W+ N VWLI Sbjct: 4 FIAWVLV-LAIAAYACAGGTDYGAGFWDLLAGGAERGKRSRWLIDHAMAPVWEVNNVWLI 62 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 ++ +P ++ FS ++ + L L R GF R + ++ I Sbjct: 63 FILVIMWTGFPTLFQTVFSAMWLPLALAAVGLVLRGAGFALRKPTRRLAQQRIYGAVFAI 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 S + P G G + G ++ T + N +L G++++ GA Sbjct: 123 SSLLTPFFFGAVLGGIASG-------RVKPGTTASTDAWANGTSVLVGLLAIAATAFLGA 175 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L L + L+ FA+ V + + Sbjct: 176 VFLC---SDALRFGADDLVDYFRVRVLIAFAVVVVLALIAL------------------- 213 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 V ++ + + + L V L T+L W+ S ++A ++ Sbjct: 214 -PVTHNDARYVWDGLTGGLGLLLVILAAVCGLATVLLVWRRSYGWSRHTSVASVALVVGA 272 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPII 351 G A P+++P SLT+ +A + TL + V V + ++ Sbjct: 273 WGCAQRPYLLP------ESLTVAEAAGAAHTLRWLVIVTAVAIVLV 312 >UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Gramella forsetii KT0803 RepID=A0LZZ1_GRAFK Length = 341 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 118/302 (39%), Gaps = 30/302 (9%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDT--ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVY 79 + + G D G G++ F R + R + N I P W+ N +WLI L+ A+P + Sbjct: 16 YVLLGGADFGAGIVELFSSRENKKLNRDTVYNVIGPVWEANHIWLIILIVILWIAFPGYF 75 Query: 80 AAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF-IGSFVPPLVIGVAF 138 ++ + LVL + R V F +R W +F I S + P+ +G++F Sbjct: 76 NIIIIYLHIPLTLVLLGITMRGVAFIFRHYDAVVDKSQDWYNHMFRISSLITPIFLGMSF 135 Query: 139 GNLLQGVPFNVDEYLRLYYTGNFFQ-LLNPFGLLAGVVSVGMIITQGATYLQMRTVGELH 197 G L+ G ++Y + F LN F L G+ + +T L T G++ Sbjct: 136 GALISGKIMVTNDYSETTFPEIFMDPWLNIFTFLTGLFYASLCAFLASTLLIGETTGDIR 195 Query: 198 LRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLV 257 + ++ +A+ T+V + G + YG +V ++ Sbjct: 196 ---KMYSRKSAIFTVVLVVIGGTVLGYGYLTEMV-----------------------FVE 229 Query: 258 NFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPS 317 +F + + L ++ + R +F+ + + +I A FP ++ + Sbjct: 230 DFLHNWVSLIAVGLSGLILIPLWRAIRNQHRLLTRIFAGMQILLVIFAAVYTHFPNLIIT 289 Query: 318 ST 319 T Sbjct: 290 QT 291 >UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB62_THET1 Length = 337 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 72/358 (20%), Positives = 138/358 (38%), Gaps = 42/358 (11%) Query: 13 LLVGVL-LIGFAVTDGFDMGVGM--LTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69 L+GVL L+ +AV G D G G+ L + + +R+ + N+I P W+ N VWLI Sbjct: 9 ALIGVLALMAYAVLAGADFGAGVWDLLAWGPKAKEQRKTISNAIGPVWEANHVWLIFIIV 68 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKI-EETRWRNMWDWGIFIGSF 128 LF +P ++A +V L L + R F +R+ E +R+ + W S Sbjct: 69 LLFTCYPRAFSALSISLFVPFHLALLGIVLRGASFVFRAYAPERSRFASFWGSVFGSASL 128 Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYL 188 P V+G+ G + G + T + +P ++ G++++ A YL Sbjct: 129 FTPFVLGMCMGAISAGSI----RQMGSKVTSDVSVWTSPVSIVMGLMALFEAAYLAAVYL 184 Query: 189 QMRTVG-ELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 + + +L R A ++ + A Sbjct: 185 TLESPDKDLQESFRIRALISGFIFAAVSLGAL---------------------------P 217 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 V L P + I LG+++ L++ K A + ++ + ++L Sbjct: 218 VFSVYAPHLWERLLAPSVVPIVFLGIIVGLVSAAALFFRKYWIARISAAGQVVILLLGWA 277 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 IA P+++ T+ ++++S+ TL + W + + I++ + GR Sbjct: 278 IAQRPYIIYPEF------TVANSSASEATLRFVIWSVPIGMLILIPSLVVLFAVFKGR 329 >UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SIK0_9ACTO Length = 335 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 144/360 (40%), Gaps = 33/360 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + W+ L+G+ + V G+D GVG+L G R + ++ P + GN+VWL+ Sbjct: 1 MELAWYALLGLFFATYLVLGGYDYGVGLLLARRGPAPGNRATL-TALGPFFLGNEVWLVA 59 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G LF A+P + SGFY A++ LA + G RS+ R WD + +G Sbjct: 60 AVGILFGAFPRLEGELLSGFYPAVLAALAGVVLVTAGVQLRSRPASAAARARWDRVVVVG 119 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + L G LLQGVP + D ++ L PF AG+ + ++ GAT Sbjct: 120 CLLAALGWGAVLAGLLQGVPLSADGHVV-----GVGHLATPFVAAAGLALLALVAVHGAT 174 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +R A LV A V + + Sbjct: 175 FLTLRLPAAEAPALARLASGLVPAALVAVGAATVLGVLSDRVRAAVARPAVAVLLPLALV 234 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + A A L AF ++ LA Sbjct: 235 AALLAARAALRRGRAGV---------------------------AFAATATALALPAPLI 267 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 G A++P ++ S+ ASLT+ +A + + TL ++ W+A+ L+P +L + A C+W GRI Sbjct: 268 GAALWPRILVSTADPAASLTVAEAAAGRPTLALLGWLALPLLPALLGFQAMCWWVFRGRI 327 >UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8S6_9DELT Length = 344 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 98/240 (40%), Gaps = 11/240 (4%) Query: 12 WLLVGVLLIGFAVTDGFDMGVGMLTRFL--GRNDTERRIMINSIAPHWDGNQVWLITAGG 69 + L+GV +I +AVT G D G G+ R + +R ++ +IAP W+ N +W+I Sbjct: 7 YWLIGVAVIAYAVTAGADFGGGLWDLLATGPRRERQRELIAEAIAPIWEVNHIWMIFVVV 66 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSK-IEETRWRNMWDWGIFIGSF 128 LF+ +P +A +V ++LVL + R F +R+ +E R W I S Sbjct: 67 MLFSVFPHAFAVVSIALHVPILLVLVGIVLRGSAFIFRAYGMEPDERRAQWGRVFAITSA 126 Query: 129 VPPLVIGVAFGNLLQG---VPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 P+ +G L G V + ++ +G F +PF L G+ ++ + A Sbjct: 127 ATPIALGAILAALSSGDILVELDAAGAPQVR-SGFFVGWTSPFALAVGLFTLALFTMLAA 185 Query: 186 TYLQ----MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 TYL +R EL + R A ++ V L ++ Sbjct: 186 TYLAREAQVRGELELSIDFRRRAVISEAVAGALAMLVCWRAWAESPELFHNLLAQPWSLP 245 >UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTP2_9PLAN Length = 341 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 78/368 (21%), Positives = 129/368 (35%), Gaps = 53/368 (14%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG--RNDTERRIMINSIAPHWDGNQVWLI 65 I +++G + + G D G G+ N+ ER+++ ++I P W+ N +WLI Sbjct: 6 ELIVGIVLGAATTLYLLFGGADFGAGIWEINTAFQSNEKERKLLYHAIGPVWEANHIWLI 65 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSK-IEETRWRNMWDWGIF 124 LFAA+P+ + A S F + LVL + FR G+ +R+ I+ R + W Sbjct: 66 FVLVVLFAAFPLAFQALCSAFIIPAFLVLVGIVFRGAGYVFRAYSIDSGRQQQFWRTLFA 125 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF-QLLNPFGLLAGVVSVGMIITQ 183 S P +G G L G + Y GN+ + P L +VG+ Sbjct: 126 GASAAAPFFLGAIAGTLASG---DSKINAAGVYEGNYLTDWITPMALFTAFFTVGLCCYL 182 Query: 184 GATYLQMRTV--GEL------HLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTM 235 A +L GE+ R AT ++ V + G+ ++ Sbjct: 183 AAVFLTREAEHSGEVELTLVWRQRALATGIWMGVLAAVGLVFVSLEAPELAHGFATRA-- 240 Query: 236 DHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFS 295 W + AL + ++L K A + Sbjct: 241 ------------------------------WPLVALSAICGTGSLLLLLWRKYTPAAACT 270 Query: 296 SLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYT 355 L A II GIA +P + P LT+ D+ + L M I+ Sbjct: 271 MLAAANIIWGWGIAQYPVIAPPF------LTLADSKAPDSVLWAMIGAVAAGAVILGPSL 324 Query: 356 AWCYWKMF 363 A ++ Sbjct: 325 ALLFYLFK 332 >UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AUB4_STRRD Length = 337 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 70/363 (19%), Positives = 126/363 (34%), Gaps = 44/363 (12%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT---ERRIMINSIAPHW 57 M ++L + W V + +A+ G D G G+ GR+ +RR++ +SI P W Sbjct: 1 MDAAQILLVVMW----VGVTLYALLAGADFGGGVWDLVAGRSRAGMPQRRLIEHSIGPVW 56 Query: 58 DGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRN 117 + N VWLI L+ +P V+AA S Y+ + L + R F +R E + Sbjct: 57 EANHVWLIFVIVVLWTGFPPVFAAVMSTLYIPLTLAALGIIARGAAFVFRKASTELWQQR 116 Query: 118 MWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSV 177 ++ S + P +G G + G L LNP LL GV++V Sbjct: 117 LFGAAFATSSVLTPFFLGAVAGGIASG-----RVPPGLAAGDLVTSWLNPTSLLGGVLAV 171 Query: 178 GMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 G+ A YL C + +G+ ++ Sbjct: 172 GVCAYLAAVYL-------------------------CDDAGRAGLPGLAEGFRRRALSTG 206 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAF-VFSS 296 + + F+ + + L L ++ + V ++ Sbjct: 207 LGVGAVVLGGIAVVRWDAPRLFDGLTHRALPLVVAAAVLGLLSLVLLWRRSYLSVRVTAA 266 Query: 297 LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 L + +I +A +P ++P LT+ A + L V V +++ Sbjct: 267 LAVTSVIWGWPLAQYPIMLPP------DLTVDVAAADPAVLGATLVVLAVGALLVVPSMT 320 Query: 357 WCY 359 W + Sbjct: 321 WLF 323 >UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=C3DRT5_BACTS Length = 121 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 71/121 (58%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L IW+ L GV+ + + DG+ +G GM+ F+ ++ ER + +I P W GN+VWLI Sbjct: 1 MLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGNEVWLI 60 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGA FAA+P+ YA FS Y + LVL +LF R G ++ K + W+ W I Sbjct: 61 TAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAI 120 Query: 126 G 126 G Sbjct: 121 G 121 >UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CZ56_9RHIZ Length = 251 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 17/221 (7%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L +I+ L+G+ ++ + + DGFD+G+G+L+ +DT++ M+++I P WD N+ WL Sbjct: 8 EWLPYIFAALMGIAILVYVILDGFDLGIGILSPLA--DDTQKDRMVSAIGPFWDANETWL 65 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + A G L A+P+ + + Y + ++L L R V F++R+K+ + W+ F Sbjct: 66 VLAVGLLLVAFPVAHGVILTTLYFPVAVLLIGLILRGVAFEFRAKV-SLDAKPSWNRMFF 124 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 IGS + L G G + G+ + F L V G Sbjct: 125 IGSLMSALAQGYMLGLYVLGLDTSWPAVG--------------FAALVAVCLAAAYAAIG 170 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG 225 A +L +T G L +R + + + + A + Sbjct: 171 AAWLIHKTEGTLQVRAVKWLRASLGLVALGMAAISLATPLA 211 >UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 Tax=Myxococcales RepID=A7H8Z5_ANADF Length = 351 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 116/342 (33%), Gaps = 41/342 (11%) Query: 26 DGFDMGVGMLTRFL--GRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAF 83 G D G G+ R +R ++ +I P W+ N VWLI LF +P +AA Sbjct: 22 GGADFGGGIWDLLATGPRRKAQRDLVEQAIGPIWEANHVWLILVIVLLFTCFPSAFAAIS 81 Query: 84 SGFYVAMILVLASLFFRPVGFDYRSK-IEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLL 142 +V ++L+L + R F +R+ E + + W S + P+V+GV G + Sbjct: 82 IALFVPLVLLLFGIVLRGAAFTFRTYDRPEDKVQVRWGLVFSSSSVLAPVVLGVVVGAIA 141 Query: 143 QGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRA 202 G E + L+PF L G+ + + A+YL + GEL R Sbjct: 142 SGRLAGPPEGVD------PLAWLSPFPLSVGLFAAALFAFLAASYLAVEAKGELQEDFRR 195 Query: 203 TAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNT 262 A A V LAGV + T ++ + + Sbjct: 196 RAIGAGGVVFGAAVLAGVLSWFDAPLVFAGLTRRGFSLPLHAATALAAVTAFAALFRRRY 255 Query: 263 PILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMN 322 + A A V L +L G + +P+++ Sbjct: 256 RLARAAAAAQVTLIVLGW--------------------------GASQYPYLVVP----- 284 Query: 323 ASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 LT+ DA++ + T + W + + G Sbjct: 285 -GLTLADASAPRATQVAVLWALAAGAVFLFPALYLLFRVFKG 325 >UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TGE2_RICCO Length = 325 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 72/194 (37%), Gaps = 6/194 (3%) Query: 86 FYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGV 145 Y + +L +L R V +RS+ R + WD + GS + GV G+L+QG+ Sbjct: 1 MYPVIFAMLFALILRGVAIGFRSEA-TARAKARWDAVMLTGSTMAAFCQGVLVGSLVQGI 59 Query: 146 PFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQ 205 R Y G + L F L GV GA++L RT G L R R + Sbjct: 60 -----RTARGTYQGGPWDWLGAFALFCGVALALGYAWLGASWLIWRTEGSLQQRARRASL 114 Query: 206 VAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPIL 265 T A+ +W ++ D Y + T D + P+ V A V Sbjct: 115 ALGTATAASTAIVSLWTLHLNDYYARRWTDDSGGVALPVAVFVFASLAAGFVYGIARRRA 174 Query: 266 WAIPALGVVLPLLT 279 +A ++ Sbjct: 175 FAPLVFALICVAAV 188 >UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax=Erwinia chrysanthemi RepID=Q937L0_ERWCH Length = 121 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 85/121 (70%), Positives = 104/121 (85%) Query: 259 FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSS 318 FNN P+LWA+P LGVVLPL+T + AR +K A AF+FSSL++AC+ILTAGIAMFPF+MPS Sbjct: 1 FNNHPVLWAVPLLGVVLPLMTAVMARAEKGAMAFLFSSLSIACVILTAGIAMFPFIMPSV 60 Query: 319 TMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSL 378 T+ N SLT+WDATSS LTL VMT VA++ VPI+L YT WCY+KMFGRITKE +E+N+HSL Sbjct: 61 TVPNVSLTVWDATSSLLTLRVMTVVAIIFVPIVLSYTIWCYYKMFGRITKEHVEQNSHSL 120 Query: 379 Y 379 Y Sbjct: 121 Y 121 >UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=A9AX76_HERA2 Length = 336 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 61/364 (16%), Positives = 133/364 (36%), Gaps = 44/364 (12%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGM--LTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 L + + + +I +A+ G D G G+ L + R +R + +++ P W+ N VWL Sbjct: 3 LEVVVAAIGLLGVITYAILAGADFGGGIWDLLAWGPRRTQQREAIAHAVGPVWEANHVWL 62 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWR-----NMW 119 I LF +P +AA G + L L + R F +R+ + + W Sbjct: 63 IFIIVVLFTGFPTAFAALSIGLFAPFHLALLGIILRGAAFVFRAYSPQKEQQPSQSSQRW 122 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 S + P+++G+ + G +D ++ + P + G++++ + Sbjct: 123 GTIFGAASVITPVILGMTLSAVSAGQLRVIDGVVQSE----GIVWMTPLAIAMGLLALAL 178 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 A Y+ + T EL R A +A + L+ + + A Sbjct: 179 CAYLAAVYMTIETRDELQADFRQRALLAGTAVVGLSLLSLPLLYFTAQHLWEGLISVRAA 238 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + +G++ LL+ + A + + + Sbjct: 239 P---------------------------VLTIGLLAALLSGWALLRWRFQLARGAAIVQI 271 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 +C++ GIA +P+++ +T+ A++ + TL + + + I+L + + Sbjct: 272 SCLLAGWGIAQYPYIIYP------DITLATASAPRATLIFILVALPLGLLILLPSLWFLF 325 Query: 360 WKMF 363 Sbjct: 326 KVFK 329 >UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A755_THECD Length = 248 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 15/186 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + IW L+ L G+ +GFD+GVGML LGR +R +MI +IAP N+VWL+ Sbjct: 1 MELIWLGLLVALPAGYFALEGFDLGVGMLLPVLGRTRRDRDLMIAAIAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G L A+P++ G Y ++++L + R G +R +++ WR +WD I Sbjct: 61 AAGVLIGAFPLLEGKVLFGLYPLVVVMLLAWVLRDAGLWFRRRLDGDAWRTLWDAVIAAA 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S L G+A + G L +P GLL GV G Sbjct: 121 SLTLSLCWGMALYAITTGFT---------------APLWHPLGLLLGVTLTLAFALHGRA 165 Query: 187 YLQMRT 192 +L R Sbjct: 166 FLGRRV 171 >UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Burkholderia pseudomallei 406e RepID=A8EQ33_BURPS Length = 278 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 3/139 (2%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W ++ + ++ + + DGFD+GVGML F R++ ER MI S++P WD N+ WL+ Sbjct: 5 LVPLWAGVLALSVLMYVLLDGFDLGVGMLFFFH-RDEAERDRMIASVSPVWDFNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G L AA+P ++ Y ++ +L L FR V F++R + +W IG Sbjct: 64 GGTLLLAAFPGAFSVVVPAVYFPVLAMLLGLLFRGVAFEFRGVA--GARKTVWSRAFAIG 121 Query: 127 SFVPPLVIGVAFGNLLQGV 145 S V GV G +QG Sbjct: 122 SLVATAAQGVVLGMFVQGF 140 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 12/203 (5%) Query: 170 LLAGVVSVGMIITQGATY--LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGID 227 ++ V + + G + + G R ++ A+ +LV A GV + + Sbjct: 79 VVPAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAIGSLVATAAQGVVLGMFVQ 138 Query: 228 GYV-VKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMD 286 G+V V + + + PL + N +P L L L + R Sbjct: 139 GFVCVIAFIAVVSVWTPLADARIAARWFAWPNLL---FFSPVPVLTAALAWLAARSLRRG 195 Query: 287 KAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVV 346 A FV S I+++P V P S+T+W A S+ + + Sbjct: 196 GEALPFVASIGLFFLAFSGLTISLWPHVAPP------SITLWSAASASASQEFLMIGTAF 249 Query: 347 LVPIILLYTAWCYWKMFGRITKE 369 ++P++L Y W YW G++ + Sbjct: 250 MLPVLLFYVCWSYWVFRGKVRGD 272 >UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEE2_9BACT Length = 344 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 111/364 (30%), Gaps = 34/364 (9%) Query: 13 LLVGVLLIGFAVTDGFDMGVGML--TRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 +G L+ + + G D G G+L GR + ++ ++ ++ P W+ N +WLI Sbjct: 7 FFIGASLLLYVLLGGSDYGAGILELLPAGGRREAQKHVINEAMGPVWEANHIWLILVIVV 66 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE--ETRWRNMWDWGIFIGSF 128 LF +P ++ ++ M+ +L + R F +R + ++ + S Sbjct: 67 LFVGFPTIFTTLMVALHIPMLALLVGIVVRGTAFTFRHYDAIQAPASQRVYTVLFGVSSL 126 Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF--QLLNPFGLLAGVVSVGMIITQGAT 186 L +G+ +L +G+ E + + L G+ + + Sbjct: 127 WSALWLGIIVASLGRGLIDTSAEAAHELGPWGVYVAPWWGAYPLAVGLFVACIFVFLACV 186 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL T R + AA+ G + Sbjct: 187 YLIDETED--AGLKRRFTRCAAVFNCAVIVAGG-----------------------GVFA 221 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 E + F P+ + AL +L + + + + + I+L Sbjct: 222 ASYGERESLPSVFFRNPLTLGVMALATLLFVALWMAIWRRNVLVTRIVAGGQVTLILLGW 281 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + P + L+ + + L + + I + R+ Sbjct: 282 WLLYAP---VAVLTAGGPLSFYAEAAPPAVLLQLVIALLAGSCFIFPSLVFLLRVFKRRL 338 Query: 367 TKED 370 + Sbjct: 339 NDAE 342 >UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BDC9_STRRD Length = 255 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 15/195 (7%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +W ++ +LLIG+ +G +G GML LGR +R ++ ++AP N+VWL+ Sbjct: 1 MDILWTGVLALLLIGYFALEGSGIGAGMLLPALGRTQPDRDRVVAAMAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G LF A+P + SG Y ++ +L S R G +R +++ WR WDW I +G Sbjct: 61 VAGVLFGAFPSIEGEVLSGLYPLVVTLLVSWILRDAGLWFRRRLDGHAWRAGWDWMICLG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S+ L G+A + G+ L +V G T Sbjct: 121 SYGLALSWGMALVAMAGGLSGPPIGLPGLGGG---------------LVVAAAFALHGWT 165 Query: 187 YLQMRTVGELHLRTR 201 +L R G++ +R Sbjct: 166 FLSWRLPGQVTGASR 180 >UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5X6_STRRD Length = 249 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 28/252 (11%) Query: 14 LVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFA 73 L+ +G+ V G D+GVG L +LGR+D ER ++ SI P + GN+VWLI + G L Sbjct: 5 LLAFFAVGYFVLAGADLGVGALLPYLGRSDDERGRVLASITPFFLGNEVWLIASAGILVG 64 Query: 74 AWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLV 133 A+P++ SG YV +++L R G R +++ WR D + GS+V L Sbjct: 65 AFPVLEGELLSGMYVPFVMLLLGWVVRDAGIWLRGRVDRAGWRGGCDGAVAAGSWVVVLS 124 Query: 134 IGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTV 193 G + Q P + V + G + +R Sbjct: 125 WGFILPGMGQ-EPVTGLGAAIVVP-----------------AVVALFCAHGLAFAGLRLA 166 Query: 194 GELHLRTRA----------TAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 G R R A A + LVC + + + Sbjct: 167 GGPRERARRFYGASSERTIYALTAGGMALVCLLAGSRLPLAENLADPATLALLTPSLLVI 226 Query: 244 LNKEVVREAGAW 255 V + W Sbjct: 227 TPVLVASQVWLW 238 >UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A4FDV9_SACEN Length = 340 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 73/358 (20%), Positives = 131/358 (36%), Gaps = 44/358 (12%) Query: 13 LLVGVLLIG---FAVTDGFDMGVGMLTRFLG---RNDTERRIMINSIAPHWDGNQVWLIT 66 ++ VL IG + + G D G G+ G R +R ++ +SI P W+ N VWLI Sbjct: 6 AVLAVLWIGLTLYVLFGGADFGGGLWDLLAGGAERGRPQRELIEHSIGPVWEANHVWLIF 65 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 + +P +A + Y+ + L + R F +R +E R R ++ Sbjct: 66 VITLFWTVFPAAFAPFAATLYIPLTLAALGIIARGAAFAFRKVSDEFRQRRLFGAAFAFS 125 Query: 127 SFVPPLVIGVAFGNLLQG-VPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 S V P +G G + G VP ++ L NP + AGV++V A Sbjct: 126 SVVTPFFLGTLLGAVASGRVPPDLASGDVLT------SWWNPTSVTAGVLAVVTTAYLAA 179 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L T R A L LV + G+ + + V + + Sbjct: 180 VFL---TADARREREPELASAFRLRALVSGVVLGMLTLAALPVVRVDAPHLFAGLTGKAL 236 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 VV VV LL++ + + +++ + ++ Sbjct: 237 PLVVTS---------------------VVAGLLSLALLLARRYLLVRITAAVAVTAVLWA 275 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 G+A +P ++P +T+ DA ++ L + WV V +++ + Y Sbjct: 276 WGVAQYPVMLPG-------VTVADAAAAPSVLVPVLWVLAVGSVLLVPSLLYLYAIFQ 326 >UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 Tax=Frankia RepID=Q2JGE7_FRASC Length = 330 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 64/354 (18%), Positives = 120/354 (33%), Gaps = 41/354 (11%) Query: 13 LLVGVLLIGFAVTDGFDMGVGMLTRFLG--RNDTERRIMINSIAPHWDGNQVWLITAGGA 70 +++ V L +A+ G D G G+ +R+++ S+ P W+ N VWLI A Sbjct: 9 IIMVVGLTAYALLGGADFGGGVWDLLARGRHAGDQRKLISASLGPVWEANHVWLIFIVVA 68 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWR-NMWDWGIFIGSFV 129 +F+ +P Y S V + + L + R + YRS + W + S + Sbjct: 69 MFSGFPEAYGVIGSSLEVPLSVALVGIVLRGAAYVYRSYGAGGAGPDHWWGHVFAVSSTI 128 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 P +GVA L G L F + +PFGL+ G +V A YL Sbjct: 129 APFALGVAGAALASG---------DLSTDDPFAPVRSPFGLVCGAFAVAATAFLAAVYL- 178 Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 R A A LV + G + + A P Sbjct: 179 ----------CRDAASSPATAHLVADFRRRAIGGAVLCGALAAILLPLLWADAPQVAGRF 228 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 R+ + AL + + ++ ++ A + + L + ++ +A Sbjct: 229 RDRS------------LPLVALSTLGGIGALVALWREQFGAARIAAGLAVGAMLWGWAVA 276 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 +P ++ T+ A + + M + + +++ + Sbjct: 277 QYPDLVVGQA------TVDTAAAPTTNIRAMLFAIAGGLVVLVPSLMMLFRLFS 324 >UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJB4_CATAD Length = 338 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 108/339 (31%), Gaps = 40/339 (11%) Query: 29 DMGVGMLTRFLG--RNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGF 86 D G G+ D ERR++ +++ P W+ N VWLI A F+ +P + G Sbjct: 25 DFGAGVWDLLARGRHADRERRLIAHALGPVWEANHVWLIFVIVATFSGFPTAFGIIARGL 84 Query: 87 YVAMILVLASLFFRPVGFDYRSKIEETRWR-NMWDWGIFIGSFVPPLVIGVAFGNLLQGV 145 + + L LA + R + YR+ E ++W + S + P ++GV+ L G Sbjct: 85 ELPLALALAGIVLRGAAYVYRAYGEGAAGPDSLWSRVFAVASSITPFMLGVSGAALATG- 143 Query: 146 PFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQ 205 +G +PF L+AGV +V + A YL Sbjct: 144 -------KITATSGPLTPFDSPFTLVAGVFAVVVTAFLAAVYL-----------CHDAGT 185 Query: 206 VAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPIL 265 LV + G V + + P+ E Sbjct: 186 DPETEDLVPAFRRRALGAAAVAGVVSMALLPLLYQDAPIVAHRFTERS------------ 233 Query: 266 WAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASL 325 A+ VV ++ A ++ + ++L A +P + + S Sbjct: 234 IPFVAVAVVCGFGSLAVIWKRHYVLARATAATAVIGVLLGWAAAQYPDLAVGAATARGS- 292 Query: 326 TMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + L+ + + +IL G Sbjct: 293 -----AAGPANLHALLIAMGFGMVVILPAFYLLLKVFSG 326 >UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit 2- like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDC Length = 424 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 110/328 (33%), Gaps = 40/328 (12%) Query: 12 WLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTE---RRIMINSIAPHWDGNQVWLITAG 68 + LVG++L + V G D G G GR + R S+AP W+ N VWL+ Sbjct: 10 FALVGLIL--YVVLAGADFGAGFWQLAAGRGERGSRIREHAHASMAPVWEANHVWLVFIL 67 Query: 69 GALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSF 128 + +P +A+ S + + + + FR + R+ + R + D + S Sbjct: 68 VIAWTCYPEAFASIASTLSIPLFIAAIGIVFRGAAYALRAGTSQRRELRVIDTVFAVSSI 127 Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYL 188 + P +G G + G + + N L GV++V Sbjct: 128 LTPFALGTVIGAIASG-----RVPVGNAAGDAWTSWTNTTSLTIGVLAVVTS-------- 174 Query: 189 QMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEV 248 A +AA+ A G M + T V Sbjct: 175 ---------------AYIAAVYLAADAARDGDAEMEEAFRHRALGTGLVAGVVAVAGLLV 219 Query: 249 VREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGI 308 +R+ L + + + + + T+ WA ++L +A +I + Sbjct: 220 LRDDVRSLYDELVSGDGLPALIVSALAGIGTLALVARRSYEWARYSAALAVAAVIAGWAL 279 Query: 309 AMFPFVMPSSTMMNASLTMWDATSSQLT 336 A P ++P LT+ A +S T Sbjct: 280 AQSPVLLPG-------LTVEQAAASHDT 300 >UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YQX5_NOCDA Length = 307 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 110/291 (37%), Gaps = 19/291 (6%) Query: 21 GFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA 80 G+ V G D+G+GML L R +RR ++ +IAP++ ++VWL+ A G L +P + Sbjct: 15 GYLVLAGADIGLGMLMPRLARGPEQRRRVVAAIAPYFLASEVWLVAAVGVLAGLFPALEH 74 Query: 81 AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGN 140 A + + + ++LA R G R++++ RWR + D + GS+ G+ Sbjct: 75 HAVAELWPVLAVLLAGWLVRDAGLWLRARVDGERWRLVCDCALVGGSWALAAAWGLVVAG 134 Query: 141 LLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRT 200 LL G G P L V + +GA + R VG + Sbjct: 135 LLAG--------------GLTASAFTP---LCAVAVTALFALRGAAFGAERLVGPADSES 177 Query: 201 RATAQVAA--LVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVN 258 A L L A A V + G S A + L +V +G Sbjct: 178 ADVAARDTRPLARLALGAAALAAVAAVLPGGPDLSPGPAAALTAVLLAALVATSGLVGPM 237 Query: 259 FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 + AI G+++ L A VF TL +I + Sbjct: 238 LSRHTSAAAIAVPGLLVALAAPELPSAPIPATTAVFVWATLVPVIPVMFVG 288 >UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZA12_PLALI Length = 345 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 130/379 (34%), Gaps = 43/379 (11%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTR--FLGRNDTERRIMINSIAPHWDGN 60 D + I + + + L +A+ G D G G+ + +R+++ I P W+ N Sbjct: 4 DAILPASILYGTLLLALTAYAILGGADFGAGIWEFNTSFRSHRRDRQLLREVIGPVWEAN 63 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNMW 119 VWLI L++A P V+ ++ ++L LA + R F +R+ E Sbjct: 64 HVWLIFVLVILWSAMPRVFQHLCVVMWLPLLLGLAGIVCRGAAFIFRAYSPVENSVTRAS 123 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 + S P +G G +L + LNP + +G +V + Sbjct: 124 TVLFGLASTAAPFFLGTVVGGILT--------REATNPRLSQTAWLNPLAIYSGFFAVAV 175 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 + + +L + + + L+GVW G + + + + Sbjct: 176 CLYLCSVFL-------FREASLRHERFLMEIWRSRAMLSGVWT-----GLLAMAGLAFVS 223 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + P + + + L + +++ A + S L + Sbjct: 224 SEQPEMARRLIWGDS------------PLVLLSWAGGMFSMVALYFRWPLAAVLASVLAV 271 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 A ++ AG+A+ P M ++ + L M + ++L AW + Sbjct: 272 AAVLWGAGLAVSPATMIPEIPLD------QLVAPPSVLWAMLVAIAGGMLLLLPSLAWLF 325 Query: 360 WKMFGR--ITKEDIERNTH 376 W + E + ++H Sbjct: 326 WLFKSSSALDHEHLAHSSH 344 >UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit II n=1 Tax=Thermobifida fusca YX RepID=Q47RW4_THEFY Length = 304 Score = 97.3 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 66/130 (50%) Query: 21 GFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA 80 G+ V G D+G+GML + R+ ERR +I IAP++ G++VWL+ G + P+ A Sbjct: 15 GYFVFAGSDIGLGMLLPYAARSPAERRRLIAVIAPYFLGSEVWLVATIGVVAGLVPVWEA 74 Query: 81 AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGN 140 A + + +L+LA+ R G R ++ RWR +WD + GS++ + G Sbjct: 75 AVVTAQWPVFVLLLAAWLGRDAGLWLRGRLPAARWRAVWDGAVAAGSWLLAVAWGFVVAA 134 Query: 141 LLQGVPFNVD 150 LL G Sbjct: 135 LLGGGTLRPG 144 >UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1NY02_9ENTR Length = 156 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 28/181 (15%) Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 M+T G L + L+ L + VW + Sbjct: 1 MKTEGHLRKTMYRILRPLTLLMLAVIGVISVWTPMQSEAIY------------------- 41 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 W N L + + L+ R + F+ + + GI+ Sbjct: 42 ---QRWFTLPNLFFFLPVPLLVIGCVWLIIKSVKRQQHDSIPFLSALALIFLGFTGLGIS 98 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 ++P ++P + DA +L M A+ ++P+IL+YT W Y+ G+IT E Sbjct: 99 IWPNLIPPAINFR------DAAGPPESLGFMLVGALFIIPVILVYTYWSYYVFRGKITPE 152 Query: 370 D 370 Sbjct: 153 Q 153 >UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4U0_9AQUI Length = 98 Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M + L IW+LL G+ LIG+++TDGFD+G G+L F +++ R +N++ P WDG Sbjct: 3 MEMFTTLNGIWFLLAGIFLIGYSLTDGFDLGSGILHIF-AKDENTRITYMNAVGPVWDGM 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYV 88 + L+ A F + F FY+ Sbjct: 62 KSGLLLEEYA-FRSLSCCVCCIFQCFYL 88 >UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SHW9_XANOP Length = 85 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 44/62 (70%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++DY LR IWWLL+GVLL G+AV GFD+GVG L F+ ND ERR++IN++ P W Sbjct: 5 LLDYTTLRVIWWLLLGVLLSGYAVMSGFDLGVGALLPFVANNDAERRLVINTVGPVWRAQ 64 Query: 61 QV 62 V Sbjct: 65 HV 66 >UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Burkholderia phymatum STM815 RepID=B2JRW5_BURP8 Length = 234 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 + P +E + + + + + +L + +A VF+ + Sbjct: 107 AIPDMRERRNHYEVSIPRVASLYLRHNLSGVFALLAAGFVYAIVRRRAFAPLVFALVWFV 166 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + +FPF +P S+T+ +S T + + VLVP +L+Y+ + +W Sbjct: 167 FALFCVLYTIFPFGLPP------SITIAQGSSPPRTQAFVLGGSSVLVPAVLVYSTFAFW 220 Query: 361 KMFGRITK 368 G++T Sbjct: 221 VFRGKVTS 228 >UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLF6_9FIRM Length = 305 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 88/267 (32%), Gaps = 23/267 (8%) Query: 17 VLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWP 76 L + + D GV ++ + +N+ ER+ +N + P DGN+ W G A + Sbjct: 14 FFLAIYLWLESQDFGVAIVAPMVAQNEEERKTALNLLKPGLDGNEAWAFLCAGVTGALFS 73 Query: 77 MVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGV 136 + + ++L + R W P L+ GV Sbjct: 74 NGRFNIPESTFWPLGIILTGMIVRLAA-------------AFWGNIFQQ----PLLLRGV 116 Query: 137 AFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGEL 196 F + NV L + L + + I GA Y +T L Sbjct: 117 RFITI-----INVISAGVLALELANWDLFTTKSVFGLIWLFMSCIQVGAIYGACKTANPL 171 Query: 197 HLRTRATAQVAALVTLVCF-ALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAW 255 R RAT V +++L+ F A+ G W + G + +S + + + Sbjct: 172 GERFRATFLVTNILSLMAFIAVFGAWYVLGNREIFGTDMLLSGFSSVVIISAIAFFSVRA 231 Query: 256 LVNFNNTPILWAIPALGVVLPLLTILT 282 + + + V + L T++ Sbjct: 232 RHVYAGMLLSYIAQWGAVCIYLFTMML 258 >UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3SF07_TRIAD Length = 262 Score = 60.7 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 84/242 (34%), Gaps = 24/242 (9%) Query: 131 PLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAG--VVSVGMIITQGATYL 188 L G+ ++ G+P + F F LAG + + + A +L Sbjct: 25 ALAFGM---GVVTGIPMSFQ----------FGTNFGKFSELAGSVIGPLIGVEVMTAFFL 71 Query: 189 QMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEV 248 + +G + + + L+ + L + I + + + Sbjct: 72 EAAFIGVMIFGWKRFSAKVHLIATILVVLGTHHSAFWILSLNSWMHTPDGISVIDGSIRI 131 Query: 249 VREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGI 308 +F+ + I G+ W+F+ S + GI Sbjct: 132 HDWLKIDSYDFSLLHYCFFIFGRGLAFEFRLKAMKSRWIWDWSFIVGS---YLATFSQGI 188 Query: 309 AMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 +++P+++ +T+WD+ + TL ++ + + +PI++ Y+ + Y+ ++ Sbjct: 189 SLWPYIVVP------DITIWDSAAPPETLKFVSIIICISLPIVIGYSIFVYYLFKEKLLL 242 Query: 369 ED 370 +D Sbjct: 243 KD 244 >UniRef50_UPI000191363F hypothetical protein Salmonellaentericaenterica_25409 n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI000191363F Length = 91 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 +F+GS + ++ + + ++G+ L PF L GV V Sbjct: 13 LFVGSILATFAQ-----GVVVSAVVSGFQVEGRTFSGSQLDWLTPFNLFCGVGLVVTYAL 67 Query: 183 QGATYLQMRTVGELHLRTRATAQV 206 GAT+L M++ LH R A ++ Sbjct: 68 LGATWLIMKSEDPLHSRMCALSRP 91 >UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacillaceae RepID=B1HTX5_LYSSC Length = 341 Score = 51.1 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 32/324 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGML---TRFLGRNDTERRIMINSIAPHWDGNQV 62 L + ++ + L G+ + D G G + +G+N I+ ++P W+ V Sbjct: 2 TLEILGISVLWIFLFGYVIVASIDFGAGFFNAYSLLIGKNHILTNIIKRYLSPVWEVTNV 61 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 +L+ + +P + + + + L L R + + S TR + Sbjct: 62 FLVFFFVGIVGFFPQTAFYYGTILLIPVSISLVLLAIRGSYYAFESYG--TRGHIGYTLT 119 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 + + P + V F G V+ L Y + +PF V+S+ ++ Sbjct: 120 YGVAGLLIPASLSVVFAIAGGGYVDLVNGQPVLNYWTLYT---SPFAWSIVVLSIAAVLY 176 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 A +L + AL+ ++ + +MY + +S Sbjct: 177 ISAVFLTWYAHKANDKEATKLMRKYALLWAAPLMVSALGIMYEMKSINPESYGHM----- 231 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 + W ++ + +L A K A A Sbjct: 232 -------------------VNLWWMFAISAILFMITVLLLALRKKYGLAVALLIAQFAVA 272 Query: 303 ILTAGIAMFPFVMPSSTMMNASLT 326 GIA +P+++ + T Sbjct: 273 FFAYGIAQYPYLLYPYLTIYDGFT 296 >UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1 Tax=Pseudomonas putida KT2440 RepID=Q88HL8_PSEPK Length = 89 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 261 NTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM 320 N +P L +V + + F+ + + GI+++P ++P Sbjct: 3 NLLWFMPVPILVLVTCYGLLRAVARNAHYTPFLLTLAQIFLGYSGLGISLWPNIIPP--- 59 Query: 321 MNASLTMWDATSSQLTLNVMTWVAVVLVPIILL 353 S+++W+A + + M + ++P L Sbjct: 60 ---SISIWEAAAPPQSQGFMLVGTLFILPSSLG 89 >UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 Tax=Bacillus RepID=A0RL15_BACAH Length = 364 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 99/298 (33%), Gaps = 6/298 (2%) Query: 21 GFAVTDGFDMGVGMLTRFLGRNDTERRIMINS-IAPHWDGNQVWLITAGGALFAAWPMVY 79 +++ D G G ++ T + N ++P W+ +L+ A +P Sbjct: 40 VYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTFLVFVVVAFLGFFPKAA 99 Query: 80 AAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFG 139 + +V ++L+L + R + + +++++ I + P ++ + Sbjct: 100 FTLATVMFVPVMLILVLVAIRSTFMVFAYSL--PKYQHLLRIISGITGLLIPALL-ITVL 156 Query: 140 NLLQGVPFNVDEYLRLYYTGNFFQLLNPFG-LLAGVVS-VGMIITQGATYLQMRTVGELH 197 + +G + E + G + +L G+ S + + A + + + + + Sbjct: 157 PVTEGAYITMSEGKEVLLYGKLLSSPVIYCYMLFGLTSELFLSSLFLADFAREQGSEDAY 216 Query: 198 LRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLV 257 R A + TLV +A V + + + + V+ + W Sbjct: 217 KIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFPWFTVSIVLFVIGYSSLWWT 276 Query: 258 NFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVM 315 N + + + A+ V+ + A ++ T + ++ Sbjct: 277 NKKYSTLGFPRIAVLAVVAQYAFASYAYGVAHLPYIIYPDVTVFTSFTTVETFYALLI 334 >UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n=2 Tax=Bacillus RepID=Q5WII1_BACSK Length = 346 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 108/358 (30%), Gaps = 31/358 (8%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMI--NSIAPHWDGNQVWLITAGGALFAAWPMVY 79 +AV D G G + R + + I N ++P W V+L+ A A +P Sbjct: 18 YAVAGSIDFGTGFWAMYYSRQNHYKAATIANNFLSPAWKVTNVFLVLLVVAFVALFPGAA 77 Query: 80 AAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFG 139 + V LVL L R Y ++ M + P ++ Sbjct: 78 PTLGTLMIVPFCLVLLLLTIRSAFLVYA--YSTKKYSRMLTLVSGLCGLFIPAILVSILP 135 Query: 140 NLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLR 199 + G + + F + G+V+ I E Sbjct: 136 AAIGGFVVVAGDKQYILVNELFLSPAFYTHVGFGLVTQLFISALFMCDYAKEAGDESTAS 195 Query: 200 TRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNF 259 + + + FA+A ++ + ++ + + + Sbjct: 196 SYRKNAIFLGPVTLVFAVAAIFTLIPEAPWMFEKFLSLWHWYT----------------- 238 Query: 260 NNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSST 319 + ALG T+ + A + + + G A P+++ Sbjct: 239 ----LSLFAFALGYSALWWRSKTSHLGHPRAALLLIVVQFGLASIAYGSAHLPYLLYP-- 292 Query: 320 MMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHS 377 ++T++DA +++ + ++ + I++ + + F +++ +S Sbjct: 293 ----NVTIYDAFTNETMFRYLLIGFLIGLAILVPVFLYFWRLFFKDKAYLQSDQHDYS 346 >UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q5N5_9ENTR Length = 81 Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 + + AM+P+++PS ++ + +S +T V+ V++ + L+Y W Sbjct: 5 LITSTLTGIIYAMYPWIIPSQVN------LYQSAASSVTQQVVLIGTAVMILLTLIYHIW 58 Query: 358 CYWKMFG 364 +W + G Sbjct: 59 PFWIIKG 65 >UniRef50_A6WFZ9 Copper resistance D domain protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WFZ9_KINRD Length = 671 Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 75/227 (33%), Gaps = 13/227 (5%) Query: 159 GNFFQLLNPFGLLAGVVSVGMIITQG-ATYLQMRTVGELHLRTRATAQVAALVTLVCFAL 217 G + L +P+G L V ++ + + RT+ L R RA ++AA ++ A Sbjct: 272 GGWSGLASPYGALVIAKVVALVALGALGVWHRRRTIPLLADRPRAFLRIAAGELVLMGAA 331 Query: 218 AGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREA---GAWLVNFNNTPILWAIPALGVV 274 G+ V V + + L E + G W + + I L +V Sbjct: 332 TGLGVALSRSPTPVPDDDPASSPAEDLLGEPLPGPLTVGRWFTETSPDLLWLTIGGLVLV 391 Query: 275 LPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ 334 LL + R AW + + + + S T + Q Sbjct: 392 GYLLGVRRLRARGDAWPVGRTVWWVLGCLALLF-------VTSGGPAAYGRTAFSTHMLQ 444 Query: 335 LTLNVMTWVAVVLV--PIILLYTAWCYWKMFGRITKEDIERNTHSLY 379 L M ++++ P+ L + R +E + HS Y Sbjct: 445 HMLLTMVVPPMLVLGAPVTLALRVLPARRDHSRGAREWLLEVVHSRY 491 >UniRef50_O34505 Uncharacterized membrane protein ythB n=12 Tax=Bacillales RepID=YTHB_BACSU Length = 346 Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTER--RIMINSIAPHWDG 59 ++ I ++ + +AV D G G + + + I ++P W+ Sbjct: 1 MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEV 60 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMW 119 V+++ ALF+ +P + + ++L L R + + + R Sbjct: 61 TNVFIVAIVVALFSFFPGATFVLGTVLLIPGSMILLLLAIRSGFLVFSN---TAKERKTL 117 Query: 120 DWGIFIGSFVPPLVI 134 + I F+ P ++ Sbjct: 118 RYISGISGFIIPAIL 132 >UniRef50_D2V2C7 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V2C7_NAEGR Length = 503 Score = 42.2 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 70/203 (34%), Gaps = 12/203 (5%) Query: 124 FIGSFVPPLVIGVAFGNLLQ--GVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 IGS + ++ GV + + + + + +++ +F L L+G++++ + Sbjct: 191 SIGSVLVAIIFGVIAALIFKYGALRHSPKLEMSIFFVLAYFSYLVSLPYLSGIMTILISG 250 Query: 182 TQGATY----LQMRTVGELHLRTRATAQVAALVTLVCFALAGV------WVMYGIDGYVV 231 + Y L ++ L + + A + T + A W + I ++ Sbjct: 251 VLMSHYSVPNLSEQSSNALLSTSNSLAMICETFTFLYVGFALFAFDNNKWHIPLICFTIL 310 Query: 232 KSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWA 291 + + PL+ + + + +A + L L + + Sbjct: 311 LCLLGRFLNIVPLSGILNMYRTGKISFKFQFVMWFAGLRGAIAFALSMQLKSHGGNGEYI 370 Query: 292 FVFSSLTLACIILTAGIAMFPFV 314 F + T+ IL G FP + Sbjct: 371 FTTTLATVFFTILVLGGGTFPLL 393 >UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B0F2_9RHOB Length = 61 Score = 41.1 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + + + +P LT+++A S +L + + +P IL YT Y+ G+ Sbjct: 1 MAYSFYTYAVP------EKLTIFEAASVPESLFINLLGTLFALPAILEYTFLSYYIFRGK 54 Query: 366 ITK 368 + Sbjct: 55 AAE 57 >UniRef50_B5HHN8 Predicted protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HHN8_STRPR Length = 152 Score = 40.7 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + + +L+ + V G D+G+GM +LGR+ ERR ++ P ++ WL+ Sbjct: 1 MELVAVVLLAGCSAVYFVFGGADIGLGMALPYLGRDRAERRRADGALWPLSVVHEGWLLQ 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVA 89 A L +P + G ++ Sbjct: 61 ALTVLAGCFPALVGEVTGGLWLV 83 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 T... 349 9e-95 UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytoch... 328 3e-88 UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 ... 319 1e-85 UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 ... 318 3e-85 UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Act... 305 2e-81 UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 299 1e-79 UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 ... 298 2e-79 UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 295 2e-78 UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subun... 282 1e-74 UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 282 2e-74 UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 280 5e-74 UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 ... 279 1e-73 UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase... 279 2e-73 UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2... 278 3e-73 UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 ... 277 3e-73 UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 277 5e-73 UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Ta... 277 6e-73 UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 276 1e-72 UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol ox... 274 3e-72 UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 T... 274 4e-72 UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 273 8e-72 UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 ... 272 1e-71 UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 ... 272 2e-71 UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Ta... 272 2e-71 UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex ... 271 3e-71 UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=... 271 3e-71 UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachl... 270 7e-71 UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireduce... 269 1e-70 UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 ... 269 2e-70 UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 266 7e-70 UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 266 9e-70 UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 264 5e-69 UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 T... 264 5e-69 UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 261 3e-68 UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitiv... 260 7e-68 UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 259 1e-67 UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II... 259 2e-67 UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyani... 258 2e-67 UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 254 4e-66 UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 252 1e-65 UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfo... 251 3e-65 UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 251 3e-65 UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 251 3e-65 UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 ... 250 8e-65 UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 249 9e-65 UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Bra... 247 3e-64 UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 ... 247 4e-64 UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 247 7e-64 UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 ... 246 1e-63 UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 245 2e-63 UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 244 4e-63 UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 243 6e-63 UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 T... 242 1e-62 UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 242 1e-62 UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 241 4e-62 UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 240 6e-62 UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 239 1e-61 UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 239 2e-61 UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 ... 238 3e-61 UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 237 6e-61 UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 236 8e-61 UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 236 1e-60 UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 236 1e-60 UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 236 1e-60 UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 236 1e-60 UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamyd... 235 2e-60 UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 ... 235 2e-60 UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 234 3e-60 UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitiv... 234 5e-60 UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 234 6e-60 UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobac... 233 9e-60 UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomon... 228 3e-58 UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=5... 227 5e-58 UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax... 224 5e-57 UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 224 6e-57 UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 223 6e-57 UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 222 2e-56 UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 219 1e-55 UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 219 1e-55 UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 219 1e-55 UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 218 2e-55 UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 216 8e-55 UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronoba... 215 2e-54 UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptospo... 212 1e-53 UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 212 2e-53 UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 210 6e-53 UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 210 7e-53 UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 ... 208 3e-52 UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 207 7e-52 UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 204 5e-51 UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (Cyd... 203 1e-50 UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 202 2e-50 UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 201 3e-50 UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 201 4e-50 UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sla... 200 8e-50 UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit I... 199 1e-49 UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteoba... 198 3e-49 UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 T... 198 3e-49 UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit ... 198 3e-49 UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 197 5e-49 UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of sub... 196 1e-48 UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=1... 194 6e-48 UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Ta... 192 2e-47 UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 T... 191 5e-47 UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 T... 189 1e-46 UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 187 4e-46 UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitrati... 187 5e-46 UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 187 8e-46 UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 183 8e-45 UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 180 7e-44 UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 180 7e-44 UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautili... 175 2e-42 UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidas... 172 3e-41 UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 170 5e-41 UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 170 6e-41 UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 169 1e-40 UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 T... 168 2e-40 UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 168 2e-40 UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 168 4e-40 UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 163 8e-39 UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,... 157 7e-37 UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptospora... 156 1e-36 UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Strep... 156 1e-36 UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 155 2e-36 UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit ... 155 2e-36 UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms Rep... 155 2e-36 UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 T... 151 4e-35 UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquino... 149 1e-34 UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 149 1e-34 UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 149 2e-34 UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 ... 148 3e-34 UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 147 8e-34 UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 142 2e-32 UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 142 2e-32 UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Ta... 142 3e-32 UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase sub... 140 9e-32 UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 136 1e-30 UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 134 5e-30 UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 133 8e-30 UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus... 129 2e-28 UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 128 4e-28 UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit... 127 6e-28 UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 127 8e-28 UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like... 122 2e-26 UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 120 9e-26 UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 120 1e-25 UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 118 5e-25 UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n... 115 2e-24 UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax... 114 7e-24 UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 109 2e-22 UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 ... 104 5e-21 UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 101 4e-20 UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C... 99 3e-19 UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit ... 96 2e-18 UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Provide... 95 5e-18 UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichop... 94 1e-17 UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 82 3e-14 UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Ta... 77 1e-12 UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 75 5e-12 UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1... 60 2e-07 UniRef50_UPI000191363F hypothetical protein Salmonellaentericaen... 54 9e-06 Sequences not found previously or not previously below threshold: UniRef50_O34505 Uncharacterized membrane protein ythB n=12 Tax=B... 82 3e-14 UniRef50_C4L5A7 Cytochrome d ubiquinol oxidase subunit II n=83 T... 73 1e-11 UniRef50_Q8CPN5 Cytochrome d ubiquinol oxidase subunit II-like p... 67 2e-09 UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea... 48 7e-04 UniRef50_A7B8V6 Putative uncharacterized protein n=1 Tax=Actinom... 47 0.001 UniRef50_Q0F0Q7 Putative uncharacterized protein n=2 Tax=Proteob... 46 0.003 UniRef50_C4L753 Diguanylate cyclase/phosphodiesterase with PAS/P... 45 0.004 UniRef50_C8X0C6 Cytochrome c family protein n=1 Tax=Desulfohalob... 45 0.006 UniRef50_D1KCB4 Thiol:disulfide interchange protein n=1 Tax=uncu... 43 0.016 UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 43 0.021 UniRef50_C2BRT8 Possible PTS system, glucose-specific IIBC compo... 41 0.051 UniRef50_D2V2C7 Predicted protein n=1 Tax=Naegleria gruberi RepI... 41 0.072 UniRef50_C0ZT41 Conserved hypothetical membrane protein n=3 Tax=... 41 0.074 UniRef50_C0WEZ0 Membrane-spanning protein n=4 Tax=Actinomycetale... 41 0.074 >UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 Tax=Bacteria RepID=CYDB_ECO57 Length = 379 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 379/379 (100%), Positives = 379/379 (100%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 361 KMFGRITKEDIERNTHSLY 379 KMFGRITKEDIERNTHSLY Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) n=37 Tax=Bacteria RepID=A4G4W0_HERAR Length = 384 Score = 328 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 181/379 (47%), Positives = 255/379 (67%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +IDY++LR WW L+GVLL+ FAVTDGFD+G G+L F+ RND ERR++INS+ P W+GN Sbjct: 6 LIDYDILRLTWWALIGVLLLAFAVTDGFDLGTGILLPFVARNDIERRVVINSVGPVWEGN 65 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FAAWP +YA AFSGFY+AM +L +L RPV F +RSK E+ WR WD Sbjct: 66 QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILVALILRPVAFKFRSKREDPGWRARWD 125 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +F FVP L+ GVA GN+LQGVPF +D + ++Y G+FF LLNPF LL G+VSV M+ Sbjct: 126 GVLFFSGFVPSLIFGVALGNVLQGVPFRLDLDMHIFYEGSFFGLLNPFALLCGLVSVAML 185 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+ +LQ++T G + R R +AAL T++ + AG+ + +DGY + S +D Sbjct: 186 AMHGSAWLQLKTDGVVAERARRYGSMAALATVLLYGCAGLLLWKYVDGYRISSMIDPVGP 245 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPL K V AGAW VN+ P A P LG++ + L RM + + + S+++++ Sbjct: 246 SNPLLKTVEGHAGAWFVNYTAQPWTMAAPVLGLLGAIGAWLGLRMRREIFTLLCSAVSIS 305 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 I+L+ G +MFPF++PSS ASLT+WD++SS LTL +M V+V+ +PII+ YT W Y Sbjct: 306 GIVLSVGASMFPFILPSSIHPAASLTVWDSSSSHLTLFIMLVVSVIFIPIIVAYTTWVYH 365 Query: 361 KMFGRITKEDIERNTHSLY 379 ++G++ ++ I T Y Sbjct: 366 VLWGKVDEKAIRDETGHAY 384 >UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 Tax=Gammaproteobacteria RepID=A5F0M8_VIBC3 Length = 378 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 200/379 (52%), Positives = 277/379 (73%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M +Y+ LR IWW L+G LLIGF +TDGFDMGVG L LG++++++R+MINSIAPHWDGN Sbjct: 1 MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLITAGGALFAAWP+VYA +FS Y+AM L+L +L+ RP+ +YR+KI+ WR + D Sbjct: 61 QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I + +PPL+ GVAFGNL+QG+PF+++ L + Y G+F L+ PF +L+G + V M Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + QG+ +L ++T LH + R TAQ++ L F + G ++++G++GY++ S++D+ A Sbjct: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPLNK V ++AGAWL NF P +W P G+++ + L+A+ A FV +S+T A Sbjct: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 CIILTAG AMFPF+MPSS + SLT+WDATSS+ TLN+MT VA V++PIIL YTA+ Y Sbjct: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359 Query: 361 KMFGRITKEDIERNTHSLY 379 MFGR+ K+ IERN HSLY Sbjct: 360 TMFGRLDKQYIERNHHSLY 378 >UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 Tax=Proteobacteria RepID=A6VVF5_MARMS Length = 378 Score = 318 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 225/378 (59%), Positives = 286/378 (75%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +DYE+L+ IWW+L+GVLLIGF+VTDGFDMGVG L + +G ND+ERR+MINSIAPHWDGNQ Sbjct: 1 MDYELLKVIWWVLIGVLLIGFSVTDGFDMGVGSLLKIIGGNDSERRVMINSIAPHWDGNQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VW ITAGGALFAAWP+VYA +FSGFY AM+LVLA+LFFRP+GFDYRSK+E T+WRN WDW Sbjct: 61 VWFITAGGALFAAWPVVYATSFSGFYFAMMLVLAALFFRPIGFDYRSKLENTKWRNGWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI GS VPP++ GVAFGNLLQGVPF D+YLR+ YTG+FF LLNPF +L G+VS+ M++ Sbjct: 121 GITFGSAVPPIIFGVAFGNLLQGVPFEFDQYLRVTYTGSFFALLNPFAILCGLVSLLMLM 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 TQG +LQM+T L + + + V F +AGVW+ YGIDGYV+ S++D Sbjct: 181 TQGGAWLQMKTDDALLEKASRITAITGALAAVLFIIAGVWLAYGIDGYVLTSSIDGNKVM 240 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL K + GAWL N++ P L P +G+ L +TA M K A +F+ SSL +A Sbjct: 241 TPLMKTAEVQPGAWLANYDKVPALMLAPIIGIAGMLFAAITAVMRKGALSFLSSSLGIAG 300 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 II+TAG +MFPF+MPSS+ + SLTMWDATSS+ T+ +M VA + VPI+L+YT W Y+ Sbjct: 301 IIVTAGGSMFPFLMPSSSYPSMSLTMWDATSSENTMMIMFVVACIFVPIVLIYTLWNYFV 360 Query: 362 MFGRITKEDIERNTHSLY 379 M+GR+TK+ IE N HSLY Sbjct: 361 MYGRLTKKHIEENNHSLY 378 >UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Actinomycetales RepID=D1BDL9_SANKS Length = 368 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 136/373 (36%), Positives = 210/373 (56%), Gaps = 38/373 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +D E L+ +W++L+ VL G+ V +GFD GVGML LGR + +RR+MIN+I P WDGN+ Sbjct: 1 MDLETLQVLWFVLIAVLWTGYLVLEGFDFGVGMLMPILGRKEKDRRVMINTIGPVWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA+ FSGFY+ + ++L L R +GF+YRSKI + WR WD Sbjct: 61 VWLLTAGGATFAAFPEWYASLFSGFYIPLFIILICLIVRGMGFEYRSKINDATWRRRWDA 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + IGS++P ++ GVAF NL++GV + + + TG FF LL+PF LL GVV++ + + Sbjct: 121 SVIIGSWLPSILWGVAFANLVRGVEMDANHTM----TGGFFSLLSPFALLGGVVTMLLFL 176 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 T GA ++ ++T G++ +R R A + ++ ++V +W Sbjct: 177 THGAVFVALKTEGDIRVRARRLAGMFSVASVVAAGGWALWAQLA---------------- 220 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 T W A+ + +++ + WAF +S+L + Sbjct: 221 ------------------YGTTWTWGAVAVAAAALVAVVVSNARAREGWAFFWSALAILA 262 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ +M+P VMP+S SL + +A+S++ TL VMTWVA+ L P++LLY +W YW Sbjct: 263 AVVLIFGSMYPDVMPASNDPANSLNIRNASSTEYTLTVMTWVALFLTPLVLLYQSWTYWV 322 Query: 362 MFGRITKEDIERN 374 RI I Sbjct: 323 FRKRIGTHHIPEP 335 >UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXC1_CHLT3 Length = 359 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 138/361 (38%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+LL+GVLLIG+A+ DGFD+GVG L L ++D ERR+++NSI P WDGN+VWLIT Sbjct: 3 LNTIWYLLIGVLLIGYAILDGFDLGVGALH-LLAKDDNERRLLLNSIGPVWDGNEVWLIT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P YA AFSGFY+A +L+L SL R V ++RSK E WRN WD+ IG Sbjct: 62 GGGALFAAFPHAYATAFSGFYLAFMLLLVSLISRAVSIEFRSKRESQAWRNFWDYSFSIG 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + ++ GVA GN++ G+ D + Y G FF LL P+ +LAGV ++ + GA Sbjct: 122 SVLSAILFGVAIGNMVAGIKIGSD----MEYAGTFFDLLTPYTVLAGVFNLALFTMHGAI 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL ++T G+L R + A A V L + + +Y + + + Sbjct: 178 YLFVKTEGDLQERVKGWAMRAFFVFLALYVIVTAATLYMKPEMIANFSFGKIQPATGSAH 237 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 E+++ + F W I L + T K AF+ S+ T+A ++ Sbjct: 238 ELIQSNQVVISVF-----AWIIVILNGLAIANIPRTLVHGKELQAFLSSACTIAALVFLF 292 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + +FP ++ SS SLT+++A SS+ TL M +A++ +P++L YT YW G+ Sbjct: 293 AVGVFPNMITSSLDPAYSLTIYNAASSEKTLFTMLIMALIGMPLVLSYTISIYWVFRGKT 352 Query: 367 T 367 T Sbjct: 353 T 353 >UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 Tax=Bacteria RepID=Q2J1M0_RHOP2 Length = 383 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 222/383 (57%), Positives = 275/383 (71%), Gaps = 4/383 (1%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+DYE L+F+WW+ VG+LL+GFA+TDG DMGVG L F+ R D ERRI INS+ PHWDGN Sbjct: 1 MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVW ITAGGA+FAAWP VYAAAFSGFY+AM+LVL +LFFRPVGFDYRSKIE WRN WD Sbjct: 61 QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN----FFQLLNPFGLLAGVVS 176 WG+F G +P L+ GVAFGNLLQGVPF +DE LR +Y G+ LLNPF LLAGV+S Sbjct: 121 WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS 180 Query: 177 VGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMD 236 + M+ G +LQ+R G + R R + + + V FALAGVW+ G+DGY + Sbjct: 181 LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA 240 Query: 237 HYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSS 296 H AASNPL KEVVR GAWL + P+ +PALG+V PLLT+L A + + AFV S+ Sbjct: 241 HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA 300 Query: 297 LTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTA 356 + II TAG++MFPF+MPSS +SLT+WDA SS+LTL VM W V+ +PI+L YT Sbjct: 301 FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV 360 Query: 357 WCYWKMFGRITKEDIERNTHSLY 379 WCY M+GR+T ++IE HS Y Sbjct: 361 WCYANMWGRVTADEIEARAHSAY 383 >UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Methylococcus capsulatus RepID=Q609X1_METCA Length = 378 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 176/379 (46%), Positives = 244/379 (64%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M DYE +R IWW++ G + GF +T GFD G+G L F+GRND ERR++IN+I P WDGN Sbjct: 1 MFDYETMRVIWWVITGAVATGFVLTVGFDFGIGALLPFIGRNDVERRVVINTIGPTWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FA WP VYA FSG Y+AM+LVL +LFFRPVGFDYRSK+E +WR WD Sbjct: 61 QVWLILLGGAIFAVWPAVYATLFSGLYIAMLLVLYTLFFRPVGFDYRSKLESPQWRTAWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 WG+FIG VPP+++GV GNLL G+PF++D LR +Y G+F+ LL PF LL GV+ + Sbjct: 121 WGLFIGGAVPPVLMGVLVGNLLVGLPFHLDGSLRTFYDGSFWGLLTPFPLLCGVIGLLAC 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + GA YL RT + R R A + +V ++ LA WV+ GI + + A Sbjct: 181 VFHGAVYLGCRTERPIEQRARRVAAIGGVVLVLLMILAAAWVILGIPRPEILTMAGPNAP 240 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNP+ K V +G+WL NF P L+ PAL V+ A ++A AF S++ + Sbjct: 241 SNPMAKTV-DFSGSWLGNFLAHPRLFVAPALAVLGVSAAAALAGSGRSAAAFAASAVGMG 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++ T G +FPF++ S+T +SLT+WDA++S L L + ++ +PI+LLYT W Y Sbjct: 300 GLLWTVGFGLFPFMLISTTDPRSSLTIWDASASHLNLQWSLAITLMFLPIVLLYTRWAYR 359 Query: 361 KMFGRITKEDIERNTHSLY 379 ++G++T DI + H+LY Sbjct: 360 VIWGKVTVADIAKGDHTLY 378 >UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subunit II n=6 Tax=Alphaproteobacteria RepID=C5AXY0_METEA Length = 384 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 188/380 (49%), Positives = 245/380 (64%), Gaps = 1/380 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 + DYE LR IWW+L+GVLLIGFAVTDGFD+GVG L F+GR D ERR+ I++++ W+GN Sbjct: 5 LSDYESLRLIWWVLLGVLLIGFAVTDGFDLGVGALLPFVGRTDVERRVAIHTVSATWEGN 64 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWL+ GGA+FAAWP +YA +FSGFY+AM LVL +L RPV F YRSK WR+ WD Sbjct: 65 QVWLVLGGGAIFAAWPALYALSFSGFYLAMFLVLFALILRPVAFKYRSKRASAAWRSRWD 124 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W +F+G VP L+ GVA GN+LQGVPF+ LR Y G+ LLNP LL G+VS+ M+ Sbjct: 125 WALFVGGAVPALIFGVAVGNVLQGVPFHFTGDLRPIYGGSLLGLLNPLALLCGLVSLVML 184 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMY-GIDGYVVKSTMDHYA 239 + GA +L + G + R RA AAL T F L G+ + GY V S + Sbjct: 185 VAHGAAWLAFKAEGAVAERARAIGLKAALATAALFTLGGLLIWAGAFGGYRVVSPLPGDG 244 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 SNPL K VV +AGAWL NF P L +P LG+V PLL L R F+ SSL + Sbjct: 245 PSNPLTKAVVADAGAWLANFRAHPALALVPLLGIVGPLLAALGFRARHEGLTFLASSLGI 304 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ACII T G++MFP ++PS+T +LT++DA+SS+ TL M V+ +PIIL YTAW Y Sbjct: 305 ACIIATVGLSMFPVILPSNTHPGHALTVFDASSSRATLRNMLIATVIFLPIILAYTAWVY 364 Query: 360 WKMFGRITKEDIERNTHSLY 379 ++G+++ DI + Y Sbjct: 365 RVLWGKVSDRDITAPGSAAY 384 >UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Bacteria RepID=A1AN69_PELPD Length = 351 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 138/377 (36%), Positives = 207/377 (54%), Gaps = 28/377 (7%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++ + IW++L GVL + +TDGF +G G ++ FL ++DTERR++IN++ P WDGN+ Sbjct: 1 MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA FS Y A++L+L +L R V F++R KI+ W+ WD Sbjct: 61 VWLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDR 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVD-EYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I I SF+P L+ GVAFGN+ +G+P D Y G+ LLNP+GLL G++ V + Sbjct: 121 AITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGSLLTLLNPYGLLTGILFVMLF 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+ Y ++T G+L R A A L L Y Sbjct: 181 AVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATYPATRLY----------- 229 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 N+ +P+L IP + V LL L A D+ AF+FS LT+ Sbjct: 230 ----------------DNYLKSPLLLIIPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIV 273 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + T +FP ++PSS ++LT+++++SS LTL +MT VA++ VPI++ Y AW Y Sbjct: 274 FVCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYR 333 Query: 361 KMFGRITKEDIERNTHS 377 R+T ED+ ++ + Sbjct: 334 IFRARVTSEDVLESSEA 350 >UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM68_AKKM8 Length = 345 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 198/369 (53%), Gaps = 31/369 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + L+ IW++LVGVL G+A+ DGFD+G G L F+ + D RR+ +N++ P WDGN+ Sbjct: 5 LTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFI-KGDENRRLTLNAVGPVWDGNE 63 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLIT GGALFAA+P VYA+ FSGFY+A +L+L +L FR V ++RSK WR WD Sbjct: 64 VWLITGGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDT 123 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 I S + L+IGVA GN+ +G+P + +TG F LLNP+ +L G+ +V + Sbjct: 124 TFSISSLLAALLIGVAMGNVTKGIPLDDHGN----FTGTFLSLLNPYSILLGLTTVALFS 179 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G YL M+T G L + R + ++ V L G + + Sbjct: 180 MHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAAL-------- 231 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 +P ++ I AL V+ + ++ WAFV S T+ C Sbjct: 232 ------------------ERSPWIYGIAALAVISIASIWIFIHRNRPGWAFVASCSTMGC 273 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ G AMFP ++ S SLT+ + +S++ +L VMT++A++ VP++L Y+A YW Sbjct: 274 MMALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGVPLVLAYSAAIYWV 333 Query: 362 MFGRITKED 370 G++ + Sbjct: 334 FRGKVQLNE 342 >UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 Tax=Bacteria RepID=D1A2D3_THECD Length = 363 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 198/370 (53%), Gaps = 43/370 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG-----RNDTERRIMINSIAPHWDGNQ 61 L +W+LL+ VL G+ + +GFD GVG+L L +DT+RR+MIN+I P WDGN+ Sbjct: 3 LTTVWFLLIAVLWAGYFLLEGFDFGVGVLMPVLAPRKAAHSDTDRRVMINTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+ AGGA FAA+P YA+ FSGFY+A++L+LA+L R V F+YR K++ RWR WD Sbjct: 63 VWLLVAGGATFAAFPEWYASLFSGFYLALLLILAALIVRGVAFEYRGKVDSDRWRRNWDL 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 IF GS VP L+ GVAF N+LQGVP + + +YTG LLNP+ LL G+ ++ + Sbjct: 123 AIFWGSAVPALLWGVAFANILQGVPLDA----QHHYTGTLLTLLNPYALLGGLTTLTVFT 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L ++T G + + R + A T+ A V Sbjct: 179 LHGAVFLALKTRGHVRDQARRAVRYLAAPTVAIAAAFLVITGVR---------------- 222 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 P WA A+ + + A + WAF +++ + Sbjct: 223 ------------------FGVPWTWATTAVAALALAGGVAAALRGRDGWAFTGTAVAIVA 264 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + T ++P V+PS+ SLT+ +A S+ TL VMTWVAV+ PI+L Y AW YW Sbjct: 265 TVATMFGDLWPAVLPSTIDPAYSLTVENAASTPYTLKVMTWVAVIFTPIVLAYQAWTYWV 324 Query: 362 MFGRITKEDI 371 R+T+E I Sbjct: 325 FRKRLTREAI 334 >UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB n=53 Tax=Bacteria RepID=A0PP39_MYCUA Length = 538 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 111/373 (29%), Positives = 190/373 (50%), Gaps = 42/373 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGML-----TRFLGRNDTERRIMINSIAPHWDGNQ 61 L+ +W+ ++ VL +GF + +GFD GVGML G + RR +N+I P WDGN+ Sbjct: 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLIT+G A+FAA+P YA FS Y+ ++ +L + R V ++R K+++++WR + D+ Sbjct: 63 VWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWRALADF 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI GS++P ++ GVAF L++G+P + + L L + +LN + LL G+ + G+ + Sbjct: 123 GIAAGSWLPAILWGVAFAILVRGLPVDANGRLAL----SIGDVLNAYTLLGGLATAGLFL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA ++ ++T G + A V +L V A GVW Sbjct: 179 FYGAVFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLA---------------- 222 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 + + V +L R WAF+ ++ +A Sbjct: 223 -----------------YGKQWTWALLGVAVVAQMAAVLLVWRRVSDGWAFLCIAVVVAA 265 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++L A++P ++PS+ ++T+++A+S+ TL +MTWV + P+ ++Y AW YW Sbjct: 266 VVLLLFGALYPNLVPSTLNERWNVTVYNASSTPYTLKIMTWVTALFAPLTVVYQAWTYWV 325 Query: 362 MFGRITKEDIERN 374 RI+ E I + Sbjct: 326 FRQRISAERIPPS 338 >UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2 Tax=Bacillaceae RepID=B7GK13_ANOFW Length = 360 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 191/368 (51%), Gaps = 32/368 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +E++ IW+ L G++ + V DG+ +G GML FL RN ER + ++ P W GN+ Sbjct: 19 MSHEMVAIIWFGLWGLIWTIYFVLDGYTLGTGMLFPFLARNRQERNQLQEAVGPFWGGNE 78 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLITAGGA FAA+P VYA FS Y M+L+L +LFFR G ++ K + W+ W W Sbjct: 79 VWLITAGGATFAAFPAVYADLFSFLYTPMMLILFALFFRAAGLEFMHKDDAPLWQKSWKW 138 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 I SF L+ GVAF NL G+ Y G FF LL+P+GLL G++ + + I Sbjct: 139 AFTISSFALALLFGVAFANLFYGLKIGPSG-----YEGTFFSLLHPYGLLGGLLFISLFI 193 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA ++ ++ VGE+ R A A+ AA++ V +L V + Sbjct: 194 VSGALWVMLKAVGEVAERAYAVARPAAIIATVILSLFFVATSNRTPLF------------ 241 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 NF PILW +PAL V LL +L + AF LT+ Sbjct: 242 ---------------HNFTKAPILWVVPALTFVCALLMLLFVWQKRIGLAFTNICLTIFT 286 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ T I MFP ++PS S T+++A S+L L +M VA+V+VPI++ Y W Y Sbjct: 287 LMATGFIGMFPNMLPSRINDEYSTTLFEAAGSELNLKIMLGVAIVMVPIVVGYQLWSYKL 346 Query: 362 MFGRITKE 369 +ITKE Sbjct: 347 FKEKITKE 354 >UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 Tax=Salmonella enterica subsp. enterica RepID=B4SUI6_SALNS Length = 378 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 211/379 (55%), Positives = 271/379 (71%), Gaps = 1/379 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+DYE LRFIWWLL+GV+L+ F VTDGFDMGVG L + RND ERR++INS+ HW+GN Sbjct: 1 MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI AGGALFAAWP VYAAAFSGFYVAMILVL +LFFRP+ FDYR KI RWR +WD Sbjct: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 G+ IGS VPP+V G+AFGNL GVPF L + Y G F+QLL+PF LL G++S+ ++ Sbjct: 121 TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV 180 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 I QG +LQ++T G + R + + +AL+ ++CF LAG W+ G+DG+ V T D Sbjct: 181 IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGF-VLLTQDANGP 239 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 SNPL K V GAW+ +F +P+L IP LG++LP+L + F+F+SLT A Sbjct: 240 SNPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQA 299 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 C+I TAGI +FPFVMPSS +SLT+WD+TSSQ+TL +M + ++ +PI+LLYT W Y+ Sbjct: 300 CVIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYY 359 Query: 361 KMFGRITKEDIERNTHSLY 379 KM GRI E + RN H LY Sbjct: 360 KMLGRINLETLRRNDHELY 378 >UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U471_9DELT Length = 350 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 31/370 (8%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 + L IW++L GVL + + DGFD+GVG L F+ +N+ E+R M+NS P WDGN+V Sbjct: 11 MHYYLAVIWFVLWGVLWAVYFILDGFDLGVGTLLPFMAKNEDEKRAMLNSTGPFWDGNEV 70 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WLITAGG FAA+P YA FSG Y A++L+L +L R V F++RSK+E WR +WD Sbjct: 71 WLITAGGVTFAAFPYAYAQMFSGLYTALMLLLFALIVRGVSFEFRSKVESASWRKLWDTC 130 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 +GSF+P L++GVAF N+ +G+P + + + F LLNP+GL GV+ V + + Sbjct: 131 HAVGSFLPALLLGVAFANIFRGLPLDETGFSQ----AGLFGLLNPYGLAGGVLFVIIFVM 186 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 GA +L +R G+L R A + +V L + + Sbjct: 187 HGALWLCIRATGDLRARAEGLAVKLWPIQVVLTVLFLAYSAVETQLF------------- 233 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 N+ P+L+ I AL V +L K A+ S L + Sbjct: 234 --------------SNYFLYPVLFVILALPVAGLVLMRAYMGAGKWWMAWGSSCLYIGGT 279 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 L +FP ++PS+ SLT+ ++ SS LTL +M V +V +P+I+ Y W Y Sbjct: 280 ALFGVAGIFPAIIPSNPNPGNSLTIMNSASSPLTLGIMLGVVLVFLPVIIGYQFWAYKTF 339 Query: 363 FGRITKEDIE 372 + KEDI Sbjct: 340 ATPMAKEDIH 349 >UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Tax=Bacillales RepID=CYDB_BACSU Length = 338 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 184/365 (50%), Gaps = 33/365 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W++LV VL +GF +GFD GVGM TRFLG N+ ERR++IN+I P WD N+VWL+ Sbjct: 3 SLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLL 62 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 T GA+FAA+P YA SG+Y+ ++VL +L R V F++R K++ +W +WDW +F Sbjct: 63 TGAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFF 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS +PP V+GV F L +G+P + D + + + +N + +L GV + G Sbjct: 123 GSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVS----DYINVYSILGGVTVTLLCFQHGL 178 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 ++ +RT+G+L R R AQ V V Y D + + Sbjct: 179 MFITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGE----------- 227 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 I + L V+ +L + R K W F + LA + Sbjct: 228 ------------------ITIPLAVLIVICFMLAAVFIRKKKDGWTFGMTGAGLALTVGM 269 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I++FP VM SS LT+ +A+S +L VM+ A+ L+P ++ W Y+ R Sbjct: 270 IFISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIWSYYVFRKR 329 Query: 366 ITKED 370 ++ ++ Sbjct: 330 VSHKE 334 >UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Listeria RepID=C2C3U7_LISGR Length = 350 Score = 276 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 33/365 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W+LLV VL IGF +GFD GVGM TRFL ++ ER++++N+I P WD N+VWLI Sbjct: 15 SLNELWFLLVAVLFIGFFFLEGFDFGVGMATRFLAKSSNERKMLVNTIGPFWDANEVWLI 74 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGA+FAA+P YA FSG+Y+ +++L +L R V F++R + + W WDW IF Sbjct: 75 TAGGAIFAAFPNWYATMFSGYYLPFVVLLLALIGRGVSFEFRGQKDTKTWLKTWDWIIFF 134 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS +PP ++GV F L +G+P + + G F +N F + G+ V + + G Sbjct: 135 GSLLPPFLLGVLFSTLAKGMPID----KEMNLHGGFTDYVNIFSVWGGITIVLICLLHGL 190 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 ++ +R GEL +R A+ T+V + D + + + Sbjct: 191 QFIALRVEGELRIRATKLAKKVWFATVVALLIFVALAFVYTDLFTARPVLVP-------- 242 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + L VV LL+ + F F L + + Sbjct: 243 ---------------------LMIGLVVVFYLLSGFFLWKGREILTFTFGGLGIVFTVGA 281 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + +FP VM SS +LT+++A S +L+VMT VAV L+P +L Y W Y+ R Sbjct: 282 IFVGLFPRVMISSITEAYNLTIYNAASGHYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKR 341 Query: 366 ITKED 370 ++ ++ Sbjct: 342 VSDKE 346 >UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol oxidase subunit II n=47 Tax=Proteobacteria RepID=Q0BVW7_GRABC Length = 342 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 107/369 (28%), Positives = 177/369 (47%), Gaps = 30/369 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + E L +IW +++ V ++ + + DGFD+G G+L R + +R +M+NSIAP WDGN+ Sbjct: 1 MITENLPYIWGMIIAVAVLAYVLLDGFDLGCGILF-LAEREEEDRDVMVNSIAPVWDGNE 59 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 WL+ GG L A +P+ YA FS FY +I +L +L FR V F++R K R R WD Sbjct: 60 TWLVMGGGGLLAVFPVAYAILFSAFYPTIIAMLLALVFRGVAFEFRFKAHTLRGRRWWDR 119 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 +GS V L G+ G +LQGV + YTG +F L PF +L GV V Sbjct: 120 AFCLGSLVAALCQGMTLGGILQGV-----HHNGFAYTGGWFDWLTPFTVLCGVAVVVGYT 174 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L ++T LH+R R A+ ++ L+ A +W + Y ++ Sbjct: 175 LLGACWLILKTENGLHVRARHYAKPLFILLLLLIAAVSLWTPLLNETYRLRWFS------ 228 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 + + +P L + L + + + A +++ Sbjct: 229 -----------------WPGIVLTAPVPLLVAAMALGFWRSLQHKRHAAPLLYAMGMFLL 271 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + GI++FP ++P + L++ DA + + + AVVL+P++L Y A+ YW Sbjct: 272 CYVGLGISLFPNIVPPAHGTTP-LSLVDAAAPAASQMFLLVGAVVLIPMVLGYNAYSYWI 330 Query: 362 MFGRITKED 370 G++ + Sbjct: 331 FRGKVRHGE 339 >UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 Tax=Aeromonas RepID=A0KIS6_AERHH Length = 375 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 3/378 (0%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 +DYE L+ IWW LV +L+GF V DGFD+GV ML + +ND ERR+++NS+ P W+GNQ Sbjct: 1 MDYETLKLIWWGLVLFMLVGFVVMDGFDLGVAMLLPVVAKNDEERRVLLNSVGPVWEGNQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI GALFAAWP+VYAAAFS YV + +L LF RPVGFDYRSK+ + WR WD Sbjct: 61 VWLIAGAGALFAAWPLVYAAAFSALYVPFMFLLFGLFLRPVGFDYRSKLADPVWRRWWDR 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + +G +P LV G G LLQG+PF D LR++Y F P L ++ +++ Sbjct: 121 ALVVGGLLPTLVFGATLGFLLQGLPFRFDAALRIHYGAFDFHW--PLLLTCMGTALALLL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA++LQ +T GE+ R + + FAL GVW + + GY V D A Sbjct: 179 LHGASFLQCKTQGEIARRCARQSLWLGPLASGLFALGGVW-LSQMAGYRVLEIGDINGAL 237 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 PL KEV WL NF P LW +PALG+VLP+++ L + + A + S A Sbjct: 238 TPLMKEVGVAQQGWLANFVAHPWLWCVPALGLVLPMVSSLASARELPRTALLASGGACAS 297 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++LT IA+FPFV+PSS ++SLT+WD+TSS+ TL +M + VL+PI + YT W Y Sbjct: 298 MMLTIAIALFPFVLPSSLDPSSSLTLWDSTSSERTLFIMLGIVGVLMPINIGYTLWVYRV 357 Query: 362 MFGRITKEDIERNTHSLY 379 + G+++ + I ++ HSLY Sbjct: 358 VRGKMSAQQIRQHGHSLY 375 >UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 Length = 338 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 183/365 (50%), Gaps = 33/365 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W++LV VL +GF +GFD GVG+ TRFLG N+ ERR+++N+I P WD N+VWLI Sbjct: 3 SLHDLWFILVSVLFVGFFFLEGFDFGVGISTRFLGHNELERRVLVNTIGPFWDANEVWLI 62 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 T GA+FAA+P YA SG+Y+ I++L +L R V F++R ++ +W WDW IF Sbjct: 63 TGTGAIFAAFPNWYATMLSGYYIPFIIILLALMGRGVAFEFRGQVNNLKWVKTWDWVIFF 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS +PP V G+ F +L +GVP + + F ++N + +L G + G Sbjct: 123 GSLIPPFVFGLIFTSLFRGVPIDG----HMNIHAGFSDIVNVYSVLGGAAVTLLSFLHGL 178 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 ++ +RT+G+L R R A+ V + Y D + ++ Sbjct: 179 MFITLRTIGDLQERARKMAKRVIGVIFLVVLAFFAMSAYDTDMFTRRAN----------- 227 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 I + L V+ +L I+ K WAF + LA + Sbjct: 228 ------------------ITIPVFVLIVICNVLAIVFMSKKKDGWAFGMTGAGLALTVAM 269 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I++FP VM SS LT+ +A+S +L VMT VA+ L+P ++ W Y+ R Sbjct: 270 IFISLFPRVMVSSLKSAYDLTVANASSGDYSLKVMTIVALTLLPFVIGSQIWSYYVFRKR 329 Query: 366 ITKED 370 ++ ++ Sbjct: 330 VSHKE 334 >UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TEW5_HELMI Length = 345 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 128/356 (35%), Positives = 204/356 (57%), Gaps = 31/356 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ W++LVGVLL+G+A+ DGFD+GVG L ++ ERR MI SI P+WD NQVWL+T Sbjct: 4 LQITWFVLVGVLLLGYALLDGFDLGVGSLYLLT-KDPDERRRMIYSIGPYWDSNQVWLLT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGA+FAA+PMVYA FSGFY+A++LVL +L FR V +++ +++ WR WD G +G Sbjct: 63 GGGAIFAAFPMVYATVFSGFYLALMLVLFALIFRAVSIEFQHQLDSPGWRKWWDLGFSLG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P ++ GVA GN+L+G+P + + Y G+F LLNP+ L+ G+VS+ + GA Sbjct: 123 SLLPSILYGVAVGNILRGIPLDANGG----YLGDFLGLLNPYSLVMGLVSLSLFAMHGAA 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ ++ G L ++ R A+ A L L F + W G Sbjct: 179 FIISQSDGALQVKARRWARAAWLTLLPLFLIGTAWSYLGTPRL----------------- 221 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N+ + P+LW P + ++ + A S+LT+ ++ T Sbjct: 222 ---------FSNYFDVPLLWVFPLIALLGLAAFPAALKGGNAYGPLGASALTIFGLLTTM 272 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 ++FP+++P+S + SLT+++A+SS+ TL +M +A++ +PI+L YTA+ Y Sbjct: 273 AASLFPYIVPASNNLANSLTVFNASSSERTLMIMLILALIGLPIVLTYTAYIYRTF 328 >UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 Tax=Proteobacteria RepID=A5FZ08_ACICJ Length = 379 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 163/378 (43%), Positives = 218/378 (57%), Gaps = 1/378 (0%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M Y L+ IW +L+GVLL G + G DMGVG L RF+GR D ERR + I PHWDGN Sbjct: 1 MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVW I GGA+FAA+P +YA +FS FYV MIL+L S+ RPV F+YRSK++ RWR WD Sbjct: 61 QVWFILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNF-FQLLNPFGLLAGVVSVGM 179 W I +P ++ G AFGN+LQGV F+ + Y G+F + LLNPF ++ GV+S+ + Sbjct: 121 WAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLAL 180 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 + QG L +R G + R R A A L+ FA+ GVWV + Sbjct: 181 AVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP 240 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 A+ V AGAW+ NF+ P+LW +PA+G++ + L K + +L Sbjct: 241 ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAW 300 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 I T G AMFPF+MPS+T SLT+W+A+ S L M A+V VPIIL YTAW + Sbjct: 301 IGTIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAF 360 Query: 360 WKMFGRITKEDIERNTHS 377 M G++ E + N HS Sbjct: 361 RVMRGKVKTESVIANDHS 378 >UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Tax=Coxiella burnetii RepID=A9KD50_COXBN Length = 381 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 160/379 (42%), Positives = 239/379 (63%), Gaps = 5/379 (1%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +++Y L+ +WW+++G +L+ +A T GFD GV M+ FL RN+T+RRI++N+ AP WDGN Sbjct: 3 LLNYTFLKVVWWMIIGSILVVYASTAGFDSGVTMIMPFL-RNETQRRILLNTSAPVWDGN 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 W++ AGG LF WP+VY+ AFSG Y+ ++ ++ SLF RP G+DYR K+ WR WD Sbjct: 62 LTWILFAGGGLFVVWPVVYSTAFSGLYLILLFIMWSLFLRPPGYDYRGKLPSPIWRRSWD 121 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +FI S VP G+AFGN L G PF+ D R YYTG++F+L N FG+L+G SV M+ Sbjct: 122 VALFISSIVPVFFFGLAFGNCLLGFPFHFDSLFRDYYTGSWFELFNGFGILSGTASVLMV 181 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + G+ Y+Q RT G+L R +A ++ + F++AG+ V+Y I GY + S Sbjct: 182 LMHGSAYIQRRTEGDLRELGRRIHYIATVLLTIAFSVAGLLVLYRIKGYTLISYPKDATI 241 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 PLN V+R GAWL ++N+ P + P + +LT+L+ + F S+L + Sbjct: 242 Y-PLNNVVIRSVGAWLNSYNHHPWKYFGPIFAYLGIILTLLSNFFRWYTFCFWSSALAIM 300 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 +I T G +FPF+MPSST + SLT+W+ATSSQ LNVM +V V+L +IL Y + Y Sbjct: 301 GLIGTIGFTLFPFIMPSSTAPDQSLTVWNATSSQYGLNVMLYVGVILFIVILGYKLYAYH 360 Query: 361 KMFGR---ITKEDIERNTH 376 ++ + IT++D+E + H Sbjct: 361 TIWSKQKTITEKDLETDKH 379 >UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex aeolicus RepID=O67371_AQUAE Length = 366 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 107/384 (27%), Positives = 186/384 (48%), Gaps = 47/384 (12%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E+L IW++L+G ++ +A DGFD+GVG++ FL +++ E+RI++NSI P WD N+VWL Sbjct: 2 ELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 I AGGALFAA+P+ YA SG Y+ +IL+L L R +G DYR K+ + D F Sbjct: 62 ILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVFF 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDE---------------YLRLYYTGNFFQLLNPFG 169 +GS + G+ GN+++G+P + E YTG +L+P+ Sbjct: 122 LGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHMICADQDCSYTGLLINILDPYA 181 Query: 170 LLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGY 229 LL +++V + GA Y T G+L R + A+ + + + + + M Sbjct: 182 LLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPLL 241 Query: 230 VVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAA 289 + N+ ++ + +V + I+ K + Sbjct: 242 --------------------------IKNYFTRMFIFPALPIVIVAFITIIVALNRQKYS 275 Query: 290 WAFVFSSLTLACIILTAGIAMFPFVMPSSTM------MNASLTMWDATSSQLTLNVMTWV 343 AF S+ + I A +++P ++PS S+T++++ SS+ TL M + Sbjct: 276 LAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVFNSASSEKTLLTMLII 335 Query: 344 AVVLVPIILLYTAWCYWKMFGRIT 367 A++ VP++L Y + Y +G++ Sbjct: 336 ALIGVPMVLTYKFFVYRIFWGKVK 359 >UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=B0U137_FRAP2 Length = 398 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 160/398 (40%), Positives = 229/398 (57%), Gaps = 20/398 (5%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +VL+ I WL+VGVL+ A T GFD GVG+L +F+G++D E+R +IN++ P WDG+Q Sbjct: 1 MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQ 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VW ITAGGA+FA WP VYA +FSG Y+A++LVL LF RP F+YR KI+ W+N WDW Sbjct: 61 VWFITAGGAIFAIWPQVYATSFSGLYIAILLVLWGLFLRPPAFEYRKKIDNPTWKNFWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYY-----------TGNFFQLLNPFGL 170 + +GS +P +V+GVA GNL G P + D+ RL Y LL PF L Sbjct: 121 MLLLGSVIPIVVMGVAIGNLYLGFPISYDDTARLIYGTVTDGQYQSMWVTLIHLLTPFAL 180 Query: 171 LAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMY---GID 227 L G+ ++ M + G+ Y ++RT G L R R V A + LV F +A +W+ Sbjct: 181 LFGIFALNMSLMHGSAYAKLRTDGVLRDRFRKITNVTATIYLVLFVVAAIWIALIPGYQY 240 Query: 228 GYVVKSTMDHYAASNPLNKEVVREAGAWLVNF--NNTPILWAIPALGVVLPLLTILTARM 285 T A +P + V+ +W NF T +W P L V LL I Sbjct: 241 STGASCTYASEALQHPFSAGVITSDHSWYYNFTQAKTIWMWFAPILAFVGALLVIKFNNK 300 Query: 286 DKAAWAFVFSSLTLACIILTAGIAMFPFVMPSST-MMNASLTMWDATSSQLTLNVMTWVA 344 DK AF+ S +L +LT G A+FPF+M S+ SLT+++A+SSQ +L + A Sbjct: 301 DKDGAAFIASMASLLGAVLTVGFALFPFIMVSNVGNFQYSLTVFNASSSQTSLIGILCAA 360 Query: 345 VVLVPIILLYTAWCYWKMF---GRITKEDIERNTHSLY 379 V+++PII YT + Y KM+ R++ E+++ N+H LY Sbjct: 361 VIILPIIFSYTFFVYKKMWANGRRVSAEEVKANSHELY 398 >UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R937_9CHLA Length = 342 Score = 270 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 193/369 (52%), Gaps = 31/369 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 MI+ L FIW+ L+ G+A+ DGFD+GVGML F +++ ERR+M+NSI P WDGN Sbjct: 1 MINASSLEFIWFSAFVALVTGYAILDGFDLGVGMLHLFSKKDE-ERRLMLNSIGPVWDGN 59 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWL+TAGGALFA +P +YA S FYV ++++L L FR V ++RSK WR MWD Sbjct: 60 EVWLVTAGGALFAGFPDIYATLCSAFYVPLMILLGGLIFRAVAIEFRSKRPMPWWRWMWD 119 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 + S + L +GV GNL++G+P + + +TG+ LL+P+ LL G+++V + Sbjct: 120 VLFSLASLIIALALGVVLGNLIRGLPLDAQK----EFTGDLSSLLHPYALLIGIMAVALF 175 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G ++ M+T GELH + R+ + ++ ++L + + + + Sbjct: 176 CMHGGIFILMKTEGELHDKIRSWINPFIIFFIITYSLVTMATLIYMPHMIKTIQ------ 229 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 PI + + ++ K AFV S + Sbjct: 230 --------------------ERPIFFLLAVGNMLSIANIPREINQGKDWLAFVSSCFNIV 269 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++L + +P V+ + + SLT++++ SS+ TL ++ +A++ +P++L YT YW Sbjct: 270 FLMLLYAVGTYPEVVRAINDPSLSLTIYNSASSEKTLEILIIIALIGIPLVLAYTTAIYW 329 Query: 361 KMFGRITKE 369 G++ + Sbjct: 330 IFHGKVKLD 338 >UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUL7_9BACI Length = 339 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 32/364 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW++L+ VL+IG+AV DGFD+G+G L LG+ + E+R +INSI P WDGN+VWL+T Sbjct: 3 LQLIWFILLAVLIIGYAVLDGFDLGIGTLFYQLGKTEEEKRTLINSIGPVWDGNEVWLLT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSK-IEETRWRNMWDWGIFI 125 GGALFAA+P VYA FSGFY+AM++VL L FR V +Y K ++ + + I Sbjct: 63 GGGALFAAFPFVYATVFSGFYLAMMVVLFGLIFRAVAVEYYFKCSDDPPMQRLMGKLFMI 122 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS +P L+ GVA GNL+ G+P + + + YT FF LL+P+ LL GV+ + + QG Sbjct: 123 GSLLPALLFGVAMGNLVIGIPMDQN----MNYTATFFHLLHPYALLIGVIGLVGFLLQGT 178 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 TY ++T L R +++ +V V + L V + Sbjct: 179 TYTILKTENALQRRAIKFSKLFVMVLGVLWILGTVATVIFAPHM---------------- 222 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 NF N P+L+ P L VV +L K F+ SS+ + +LT Sbjct: 223 ----------FTNFTNQPLLFVFPLLTVVAIVLIPFFMYQKKYMAVFLSSSVIITSKLLT 272 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +FP ++ + SLT+++A+SS+ TL VM +A++ +P+++ YTA+ YW G+ Sbjct: 273 LAGGLFPNLV-TGADPATSLTIYNASSSEYTLTVMLIIALIGMPVVIGYTAFIYWHFRGK 331 Query: 366 ITKE 369 + E Sbjct: 332 ASHE 335 >UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 Tax=Proteobacteria RepID=C8WEN7_ZYMMN Length = 340 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 164/365 (44%), Gaps = 34/365 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W L V ++ + V DGFD+G+G+L +++ R +M+N+IAP WDGN+ W++ Sbjct: 7 WLPVVWACLAAVGILIYVVLDGFDLGIGILFA-TQKDEKHRDVMMNTIAPVWDGNETWMV 65 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L A+ Y+ Y+ +I++L +L FR V F+YR R +W Sbjct: 66 FGGAVLLGAFQTAYSVILPALYLPLIVMLLALIFRGVAFEYRVHAHSKEARCLWGAAFMG 125 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + G+ G LLQG+ + ++TG+ LNPF + GV V GA Sbjct: 126 GSTLATFCQGMVLGGLLQGI-----KTTDHHFTGSALDWLNPFSIFCGVALVIGYGLLGA 180 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L RT GEL R A+ + LVC A+ VW Y+ Sbjct: 181 GWLIWRTEGELQAYARRAARCLGSLLLVCIAVVAVWTPMLRSTYLN-------------- 226 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 W + ++ + L V++ ++ + + K F+ + L Sbjct: 227 --------TWTNSSSHAVAAVVLAVLAVLVSVIFFRSLKSGKDRTPFLCALGWFILSYLG 278 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 ++ +P+++P +T+W A+S + + V+L+P++L YT +CY G+ Sbjct: 279 LALSAWPYIVPPY------ITIWQASSPVTSQTFLLVGTVILLPLVLAYTIYCYKIFHGK 332 Query: 366 ITKED 370 +T D Sbjct: 333 VTSSD 337 >UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DWD8_SULAA Length = 344 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 139/369 (37%), Positives = 204/369 (55%), Gaps = 31/369 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L IW+LL GV L+G+A+TDGFD+G G+LT F +++ RRI+ N+IAP WDGN Sbjct: 3 MEMLTTLEGIWFLLAGVFLVGYALTDGFDLGTGILTIFTKKDEN-RRILYNAIAPVWDGN 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWLI GG LFAA+P+VYAA+FSGFY+A++LVL +L R V F+YR+K E WRN WD Sbjct: 62 EVWLIAGGGMLFAAFPVVYAASFSGFYLAILLVLWALIGRAVAFEYRNKKETPLWRNTWD 121 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W +IG+FVP L+ GVA GN + GVP + + Y G+FF LL P LL G V+ M Sbjct: 122 WIYWIGNFVPALLFGVAVGNAVIGVPIDQEG----IYRGDFFTLLRPIPLLMGFVAAFMF 177 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + G+ YL +T GE+ + A + ++ A+ + Sbjct: 178 LMHGSAYLLRKTEGEVFELAKKAAYIGFFGYVITLAITDFLM------------------ 219 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 V A N+ P+ W PA ++ +L + S+LT Sbjct: 220 --------VIVAPFLYDNYFKYPLFWIAPAFIIIGLILYFKNLVSNNYDKVIYGSTLTTV 271 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 +LT +A +P +M SS +LT+W++ SS +TL VM V ++++PI++ YT + Y Sbjct: 272 GTVLTIALASYPVLMRSSLNPEYNLTIWNSASSHITLTVMLVVTILIMPIVIFYTTYVYR 331 Query: 361 KMFGRITKE 369 G+++ E Sbjct: 332 VFKGKVSSE 340 >UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Bacteria RepID=A7HAW4_ANADF Length = 342 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 187/371 (50%), Gaps = 32/371 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ +W+ L+GVLL G+AV DGFD+GVG L R++ +RR+++NSI P WDGN+VWL+T Sbjct: 3 LQVLWFALLGVLLAGYAVLDGFDLGVGTLYLLARRDE-QRRVLLNSIGPVWDGNEVWLVT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P YA FS Y +L++ +L FR V ++RS+ WR WD F Sbjct: 62 FGGALFAAFPRAYATTFSALYTPFMLLILALIFRAVAIEFRSRRPSRAWRTTWDVAFFAA 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + PL+ G A NL++G+P D ++ LL+P+ LL G ++ + GAT Sbjct: 122 SALSPLLFGAAIANLMRGLPVRADGEAQIA----LLGLLSPYALLVGAFTLSLFALHGAT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T GELH R A AA V + L ++ + I Sbjct: 178 WLLLKTEGELHEDVRRWAWTAAGVFSTLYLLTTIFTLVAIPRATA--------------- 222 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N W + L V+ + + AFV S+ T+ +++ Sbjct: 223 -----------NLAELRWGWVVVVLNVLAAGNVPRAVYLRRYGQAFVSSAATIVALVVLF 271 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 G+A +P ++ S+ S+T+ + +S+ TL M +A + +P +L YT YW G++ Sbjct: 272 GLAQWPNLVTSTLDPAFSITIRNGSSTAPTLRNMAIIAAMGMPFVLGYTGLIYWVFRGKV 331 Query: 367 TKEDIERNTHS 377 + + R H Sbjct: 332 REGE-HRGGHG 341 >UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Actinomyces RepID=C0W2T5_9ACTO Length = 378 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 130/394 (32%), Positives = 196/394 (49%), Gaps = 52/394 (13%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 +L +W++L+ VL IG+ +GFD GVGML + LGRN+ ERR M+ +I PHWDGN+VWL Sbjct: 2 TLLSILWFILIAVLWIGYLTLEGFDFGVGMLLKILGRNEQERRAMMKTIGPHWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TAGGA FAA+P Y FSG Y+ + L+L L R ++RSKI +WR+ WDW Sbjct: 62 LTAGGATFAAFPEWYGTLFSGAYLVLFLILLCLIVRICAIEWRSKINSQKWRDNWDWAHT 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDE-------------------YLRLYYTGNFFQLL 165 + +++P ++ G AF NL+QG+ V E TG FF LL Sbjct: 122 VSTWLPSILWGAAFANLVQGMKIEVVEVATGNVIPAENVPSETLLAGASHELTGGFFSLL 181 Query: 166 NPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG 225 PF +L G+V+ + +T GA Y ++T G+L R A A+ +A+ + A+ +W Sbjct: 182 TPFTILGGLVTCSLFLTHGALYTALKTAGDLSARAEAFARKSAIASTALTAVWALWAQLA 241 Query: 226 IDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARM 285 ++ + W + V + ++L Sbjct: 242 ---------------------------------YSLNALAWIPLLVAAVFLIASLLMTWA 268 Query: 286 DKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAV 345 + WAF +A ++ AM P VM SS + SLT+ A S +TL +MT A+ Sbjct: 269 GRQGWAFSLHFGGIAFAVVFIFSAMAPNVMRSSIDDSYSLTIAQAASDDVTLAIMTVAAI 328 Query: 346 VLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY 379 + VP++L YT W Y R++ E I+ N L+ Sbjct: 329 IFVPVVLFYTIWGYKVFSKRVSAEKIDPNEGGLH 362 >UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 Tax=Bacillus RepID=Q816N2_BACCR Length = 345 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 183/369 (49%), Gaps = 32/369 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++ +++L IW+ L GV+ + + DG+ +G GM+ F+ ++ ER + +I P W GN Sbjct: 3 LMSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGN 62 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWLITAGGA FAA+P+ YA FS Y + LVL +LF R G ++ K + W+ Sbjct: 63 EVWLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCK 122 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W IGSF+ + GV F NL G+ + Y GN LLN +G+L G+ + Sbjct: 123 WAFAIGSFLIAFLFGVTFANLYYGLQIGKNG-----YEGNLLSLLNHYGILGGLFFTAIF 177 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + GA ++ ++T GE+ R A+ ++ + A+ V Sbjct: 178 VVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATA----------------- 220 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 NF P+L+ +P L +++ +L ++ K AF F LT+A Sbjct: 221 ----------NRTNLFQNFTEYPVLFILPVLAMLMSVLALIMVYKHKIGLAFTFVCLTIA 270 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + T MFP ++PS S T+++A SQL L +M +VA+V+VPI++ Y W Y Sbjct: 271 MFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIGYQLWSYS 330 Query: 361 KMFGRITKE 369 +I K+ Sbjct: 331 IFKNKIHKD 339 >UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPM5_9FIRM Length = 338 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 122/369 (33%), Positives = 187/369 (50%), Gaps = 36/369 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W++L+ VL GF +GFD GVG L FL ++ ER ++ +I P WDGN+VW+IT Sbjct: 4 LTILWFILITVLFTGFFFLEGFDYGVGGLLPFLSSDEEERGEILRTITPVWDGNEVWMIT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGALFAA+P VYA FS FY+A+ L+L +L R V FD R + E W+ WD I G Sbjct: 64 AGGALFAAFPHVYATMFSAFYLALFLMLVALILRGVAFDLRGRQESRCWKRFWDGAICFG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP + GVA NL+ G+P N ++ Y G FF LL P+ ++ G+ + + + G Sbjct: 124 SVVPAFLWGVAVTNLIAGLPIN----EKMIYMGGFFDLLTPYTIVGGLAFLFVFLFHGTA 179 Query: 187 YLQMR-TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L +R L LR + A + ++ F L + D + Sbjct: 180 FLTLRLAKTSLILRCQEVALKTGAIAVIFFVLCMAMTLTYTDLFTK-------------- 225 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 P+ + ++ +L+ ++ K +F+ SS + + Sbjct: 226 -----------------PVAAVALVGAALFFVMAMLSMKLGKGKASFLLSSAAIVATTVA 268 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +FP +M SS SLT+ +A+SS TL+VMT A + VPI+L+Y +W Y+ R Sbjct: 269 FFAGLFPRLMVSSLNPAWSLTITNASSSPYTLSVMTVAAGIFVPIVLIYQSWSYYIFRKR 328 Query: 366 ITKEDIERN 374 +T +D E + Sbjct: 329 VTAKDAEEH 337 >UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitive n=183 Tax=Proteobacteria RepID=B0VC09_ACIBY Length = 351 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 90/368 (24%), Positives = 167/368 (45%), Gaps = 37/368 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++G+ ++ + V DGFD+G+G++ F+ +N ER +M+N++AP WDGN+ W++ Sbjct: 21 LSLIWVGIIGLGVLIYVVMDGFDLGIGIMFPFI-KNSQERDVMMNTVAPVWDGNETWMVL 79 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G L+AA+P+VY+ S Y+ +I ++ +L FR V F++R K T +++WD G Sbjct: 80 GGAGLYAAFPLVYSTVLSALYLPIIFMVIALIFRGVAFEFRFKAHRT--KHLWDLAFIWG 137 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + + G+ G +QG+ + + G F L F + G+ V M T G Sbjct: 138 SVLTSFLQGIILGAYIQGI-----KTENGIFAGGPFDWLTAFSIFTGIGVVAMYATLGCG 192 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T L R + L+ F ++ PL Sbjct: 193 WLILKTEKGLQQRMYELMPKLIIALLIIFGAVSLYT--------------------PLTH 232 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + + L N +P L ++ L + + + F+++ + Sbjct: 233 PEIADRWFSLPNLF---YFSPVPILVLLFVGLILSACKKQQDHKPFIYTLALVFLAFTGF 289 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I+++P ++P S+T+W A + + A++L+PII+ YT YW ++ Sbjct: 290 VISLWPNIIPP------SVTIWQAAAPHSSQMFALVGALILIPIIITYTIVSYWVFRDKV 343 Query: 367 TKEDIERN 374 D + Sbjct: 344 RVGDEGYH 351 >UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RCZ4_KANKD Length = 338 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 176/363 (48%), Gaps = 37/363 (10%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 IW L+ ++ + + DGFD+G+G+L F+ +N T++ +NS+AP WDGN+ WL+ Sbjct: 10 AMIWAGLIAFAVLAYIILDGFDLGIGILFPFI-KNKTDQETAMNSVAPIWDGNETWLVLG 68 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 GG LFA +P+ Y+ Y+ +IL+L L FR V F++ + + + ++ WD G F+GS Sbjct: 69 GGGLFAVFPLAYSVIMPALYMPIILMLLGLIFRGVAFEFHWRTKNS--QDWWDRGFFLGS 126 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 V L G+A G L+QG+ Y G ++ L PF + G+ + GAT+ Sbjct: 127 LVATLCQGIALGALVQGITV-----ADRAYAGGWWDWLTPFSITTGIALAMGYVLLGATW 181 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 L M+T GEL ++ A++AA +TL+ + +W+++ Y+ + Sbjct: 182 LNMKTTGELQKQSVQFAKIAAWLTLLFIGIISLWMVFIEQQYLHRWF------------- 228 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 + N L +P + + R + F+++ + Sbjct: 229 ----------DAPNLYYLIIVPLAVLFCGFQLLNGLRKGRETSPFMYAIGLFVLSYIGIL 278 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 I+ +P ++P S+T+W A + +L + A L+PII+ YTA+ YW G++ Sbjct: 279 ISFYPNLVPP------SITIWQAAAPDDSLKFLLVGAAALLPIIIGYTAYAYWVFRGKVK 332 Query: 368 KED 370 + Sbjct: 333 ANE 335 >UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A5CR84_CLAM3 Length = 334 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 187/370 (50%), Gaps = 38/370 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+ ++ L +G+ V DGFD GVGM FL ++DT+RR++IN+I P WD N+ WLI Sbjct: 3 LTLIWFGVIAFLFVGYFVLDGFDFGVGMSLPFLAKDDTDRRVLINTIGPVWDLNETWLIV 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AG ALFAA+P YA FSGFY+ ++ +L +L R V F++R + RWR +D I +G Sbjct: 63 AGAALFAAFPEWYATMFSGFYLLLLAILITLILRGVSFEFRHQGASDRWRGWFDAMIVVG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP + GV F N+++GVP + YTG+ LLNP+ LL G+ ++ + + G Sbjct: 123 SVVPSFLWGVVFANVVRGVPMD----RHHDYTGSTLDLLNPYALLGGLTTLSLFLVNGLQ 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 + ++T G + R R + VT+V A VW Sbjct: 179 FAALKTDGPIRARARLLSMRVGAVTIVIAATFLVWTTLTHGSAPSG-------------- 224 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + AL V + + L + WAF + T+A + + Sbjct: 225 --------------------LVSALAAVALVGSYLANVRGRERWAFGLLAATIALAVASL 264 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 A+ PFVMP+S LT+ +A+SS TL +MTW A +P+IL Y AW YW RI Sbjct: 265 FTALHPFVMPASNDAAYGLTLENASSSPYTLTIMTWAAGFALPLILAYQAWTYWVFRKRI 324 Query: 367 TKEDIERNTH 376 T+ I + H Sbjct: 325 TRAVIAQAAH 334 >UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyanide insensitive n=5 Tax=Legionellales RepID=Q5ZZ11_LEGPH Length = 329 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 164/363 (45%), Gaps = 37/363 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L FI+ L+G +++ + + DGFD+G+G+L F +++ER M+NSIAP WDGN+ WL+ Sbjct: 1 MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTS-SESERDKMMNSIAPVWDGNETWLV 59 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L+ A+P VY Y+ ++L+L +L FR V F++R K R + +W+W I Sbjct: 60 FGGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRFKA--KRSKTLWNWSFSI 117 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 S + GV G +QG N L PF L G+ V G+ Sbjct: 118 SSVAATFLQGVILGAFVQGFSINESSMTINDP-----DWLTPFSLCTGIALVCGYALLGS 172 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T++ +++ G L + A+ ++ +W + + Sbjct: 173 TWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRW------------ 220 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 +F N +L +P + ++ L F++S + C + Sbjct: 221 -----------YSFPNVLLLSPLPLIALMAIYLVWQNLNSGSEYKPFIYSIIIFLCSYIG 269 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I+++P+++P +T+W+A + TL + +++PI+L YT + Y+ G+ Sbjct: 270 IAISVYPYLIP------HQVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLFRGK 323 Query: 366 ITK 368 ++ Sbjct: 324 SSE 326 >UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Bacteroidetes RepID=C7M6E4_CAPOD Length = 344 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 105/363 (28%), Positives = 175/363 (48%), Gaps = 31/363 (8%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 W++++G L+ G+A+ DGFD G G F + ERR+ +N+I P WDGN+ WL+ Sbjct: 10 PTWWFIIIGFLITGYAILDGFDFGAGAWHLFFDK-KKERRVALNAIGPVWDGNEAWLVIG 68 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 G +FA +P++YA FS +L L + FR V + R K + RWRN WD + S Sbjct: 69 GAGIFAGFPLMYAELFSAMNTPFMLFLTFIIFRAVAIEVRGKEDSDRWRNTWDTVYSVCS 128 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 V P+++GV N+LQG+P + + Y G F L P+ LL GV+++ + + G Y Sbjct: 129 IVLPVLLGVVIANVLQGLPLDEN---FQYTGGALFTFLTPYALLVGVMTLLLFMVHGGLY 185 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 L ++T G++H R A L LV F ++ M Sbjct: 186 LLLKTHGDMHHRIEKRINYAYLGFLVVFTAVAIYSMLT---------------------- 223 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 N N L PAL ++ L + AFV + LT+ ++ A Sbjct: 224 -----PHLAENIANNTALKVFPALLLLSILSVAFFMKKKDYKKAFVGTILTIVFFMVVAA 278 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 + + P + ++ S+T+++A +SQ +L +M + + P++LLYT + Y +G++ Sbjct: 279 LNLHPTFLRTTLETGNSITVYNAAASQKSLKIMLTITAIGAPLLLLYTYFAYKVFWGKVE 338 Query: 368 KED 370 ++ Sbjct: 339 IDE 341 >UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLM4_LEGLO Length = 331 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 163/366 (44%), Gaps = 39/366 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L I+ +L+ +++ + + DGFD+G+G+L F ++ ER M+NSIAP WDGN+ WL+ Sbjct: 1 MLPLIFAVLLAFIVMMYVILDGFDLGIGILFPFTS-SEKERDKMMNSIAPVWDGNETWLV 59 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L+ +P VY A Y+ ++ +L +L FR V F++R K + + + +W+W I Sbjct: 60 FGGAILYGGFPQVYGALLPVLYIPIMFMLIALIFRGVSFEFRFKAD--KSKPVWNWLFAI 117 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS GV G +QG N L PF L GV V GA Sbjct: 118 GSIAAAFFQGVILGCFVQGFSMNPQTMAI-----TQSSWLTPFSLFTGVALVSGYGLLGA 172 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T++ +++ G+L + A+ + +W PL+ Sbjct: 173 TWMIIKSSGKLQAKMVHYARGLLISVSFFLVFVSIWT--------------------PLH 212 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTIL--TARMDKAAWAFVFSSLTLACII 303 E V NF L +P + LT + + F++S + C Sbjct: 213 SEEVFNRWYQFPNFL---WLSPLPLITAFAIYLTWRNLSLNSNNERKPFIYSIIIFLCSY 269 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 + ++++P+++P +T+W+A + TL + +++PI+L YT + Y+ Sbjct: 270 IGIAVSVYPYLIP------HQITIWEAAAPSSTLTFILVGVAIMLPILLAYTLYAYFLFR 323 Query: 364 GRITKE 369 G+ + Sbjct: 324 GKTEEH 329 >UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVU2_9DELT Length = 344 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 196/373 (52%), Gaps = 31/373 (8%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 E L+ IW++L +L + V DGFD+G+G L F+G N+ ERRIM N+ P WDGN+V Sbjct: 1 MLETLQVIWFILWALLWAVYFVLDGFDLGLGSLLPFIGSNEEERRIMYNAAGPFWDGNEV 60 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WLI+AGG FAA+P VYA FS Y ++++L +L FR V F++R K+E WR WD Sbjct: 61 WLISAGGVTFAAFPKVYAVMFSALYAPLLILLFALIFRAVSFEFRGKVESGVWRGFWDLV 120 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 F+ + VP L++GV F NL G+P + + + G L+N +G+ + + M + Sbjct: 121 HFLSNLVPSLLLGVTFANLFMGIPIDGEG----VFHGTLMGLVNGYGIAGAIFFLVMFML 176 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 G+ +L +++ GEL R A+A + V L+ V + D + Sbjct: 177 HGSLWLAIKSQGELQTRAVASATLLWPVMLILLVAFLVLTFFNTDLF------------- 223 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 N+ + P+L +P + + L R + A++ S++ + + Sbjct: 224 --------------NNYWSNPLLLLLPVVALAGLLGVRCMLRRGQLWKAWMCSAVYIIGV 269 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 + MFP ++ SS A+LT ++A+SS+LTL +M VA+V+VPI+LLY W Y Sbjct: 270 TFFGVMGMFPRMLISSIDPTATLTAFNASSSELTLKIMLGVALVMVPIVLLYQFWVYRLF 329 Query: 363 FGRITKEDIERNT 375 ++ ED++ Sbjct: 330 SHSLSAEDLKDEH 342 >UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Propionibacterium acnes RepID=Q6ABD4_PROAC Length = 357 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 132/375 (35%), Positives = 194/375 (51%), Gaps = 35/375 (9%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 + L +W++L+ VL +GF +GFD GV ML FLGR+D +RR+M+N+I P WDGN+V Sbjct: 9 AHSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEV 68 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+TAGGA FAA+P YA FSG Y+ ++LVL L R V F+YRSK + WRN +DW Sbjct: 69 WLLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWM 128 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPF----NVDEYLRLYYTGNFFQLLNPFGLLAGVVSVG 178 IGSF+P LV+GV F N ++G+ D T +F+ L PF L+ G++ V Sbjct: 129 ATIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFALIGGILFVV 188 Query: 179 MIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHY 238 + GA ++ ++T+G++H R R T+ + V +A VW + YV + Sbjct: 189 LFCAHGANFVALKTMGDMHDRARKTSAKLGWIATV---VALVWALMFNIMYVTRDG---- 241 Query: 239 AASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298 + W I L VVL + AF+ ++L Sbjct: 242 ----------------------RQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALG 279 Query: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 +A +I+ AM+ + + MW A+++ TL +MT A V VPI+L Y W Sbjct: 280 IALMIVACMFAMYGNL--GYRPSGIAFDMWIASATGRTLKIMTISACVFVPIVLAYQVWS 337 Query: 359 YWKMFGRITKEDIER 373 YW R+T+E I Sbjct: 338 YWVFRKRLTREAIPD 352 >UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Acidobacteria RepID=Q1ILJ8_ACIBL Length = 349 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 106/375 (28%), Positives = 186/375 (49%), Gaps = 31/375 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +W+ +V V++ + V DGFD+G G+L F+ R D ERR++I SI P WDGN+VWL++ Sbjct: 1 MPTLWFCIVAVMVAAYVVLDGFDLGAGVLHLFVARTDEERRLIIRSIGPVWDGNEVWLLS 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG L+ A+P +YA+ FSGFY+ +++VL L R +G ++R+ I+ W+ +D + Sbjct: 61 AGGTLYFAFPQLYASGFSGFYLPLMMVLWLLMGRAIGIEFRTHIQSDVWKGFFDVVFSLS 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYT-----GNFFQLLNPFGLLAGVVSVGMII 181 S + + G A GN+++GVP D Y G +L+ + +L GV++ + Sbjct: 121 SLLLTIFFGAALGNVIRGVPLGEDRYFFEPLWTNWRVGPHPGILDWYTVLCGVIAAVTLT 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA Y+ +T G+L+ R R TA V V ++ ++ + Sbjct: 181 AHGAFYVASKTEGDLNQRCRKTAAVLWPVQVLLTIVSLIAT------------------- 221 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 L N+ P+ W IP L V + + AFV S+L + Sbjct: 222 -------TSIRPEVLANYKRWPVGWLIPILVVATLGGMFVFRKKGNDKAAFVSSALYITV 274 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 +++ A A++P V+P+ST + SLT+ +A++ L + + + + Y + Y Sbjct: 275 MLVGAVFALYPTVLPASTNPDWSLTIQNASAPTYGLTIGLVWWSIGMVFTVGYFVFVYRM 334 Query: 362 MFGRITKEDIERNTH 376 G+++ D + + Sbjct: 335 FRGKVSLSDGSDHGY 349 >UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 Tax=Proteobacteria RepID=Q4KA99_PSEF5 Length = 338 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 165/364 (45%), Gaps = 36/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW +++ ++ + + DGFD+G+G+L + + ER +M+N++AP WDGN+ WLI Sbjct: 8 LSLIWGVIIAFGVMMYVIMDGFDLGLGILFPLIP-DARERDVMMNTVAPVWDGNETWLIL 66 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G AL+ A+P+ Y+ Y+ +I +LA L FR V F++R K R++WDW G Sbjct: 67 GGAALYGAFPLAYSVILEALYLPLIFMLAGLIFRGVAFEFRFKA-SPEKRHIWDWAFIGG 125 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L G+ G + G+P + + G L PF L G+ + G+T Sbjct: 126 SLLATLCQGIVIGTYISGIPV-----VDRQFAGGTLDWLAPFPLFCGLGLIVAYALLGST 180 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T G L R R + A A+ VW + Sbjct: 181 WLLVKTEGMLEARMRHYTRPLAFALTAVVAVLCVWTALLHPEIANRWFSH---------- 230 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + I A+ LG+ + T R + W FVF+ + + + Sbjct: 231 -------------AHIVIFGALLVLGLAALFGLLGTLRQHHSHWPFVFTLVLVFLGYIGL 277 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 +++P ++P S+++W+A S + + + ++P+IL+YT W Y+ G++ Sbjct: 278 AFSIWPNIVPP------SISLWEAASPLSSQLFILIGTLFILPVILMYTCWSYYVFRGKV 331 Query: 367 TKED 370 D Sbjct: 332 RIGD 335 >UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=Proteobacteria RepID=A8GFS1_SERP5 Length = 335 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 162/364 (44%), Gaps = 36/364 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++++ + + V DGFD+G+G+L ++ ++ +R +M+N++AP WDGN+ WL+ Sbjct: 5 LPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWV-KDSGDRDVMMNTVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G ALF A+P+ YA + + L+L L FR V F++R K R++WD G Sbjct: 64 GGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFKA-TAEKRHIWDKAFIWG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S GV G +++G P N Y G L PF L G+ V G T Sbjct: 123 SVFATFSQGVVVGAIIKGFPVN-----GRTYAGGALDWLTPFALFCGLGLVVTYALLGCT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T G+L R A L+ A+ +W P+ Sbjct: 178 WLVMKTAGDLQARMYRLAMPLLATLLLVLAVVSIWT--------------------PIAH 217 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + L N + + L + F+ + L + + Sbjct: 218 PEIANRWFSLPNLFVLLPVPILVLLSAWGIG---HGVKNAAHYSPFLLTLLLVFLGLSGL 274 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 GI+++P ++P S+T+W A + +L M A+ ++PIIL+YT W Y+ G++ Sbjct: 275 GISIWPLLIPP------SITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWSYYVFRGKV 328 Query: 367 TKED 370 + E Sbjct: 329 SHEQ 332 >UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDJ2_BRAFD Length = 357 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 118/379 (31%), Positives = 180/379 (47%), Gaps = 38/379 (10%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGM-LTRFLGRNDTERRIMINSIAPHWDG 59 M+D VL +W+ L+ +G+ V +GFD GV M + F R R ++ +I P WDG Sbjct: 1 MLDPTVLETLWFFLIAFFFLGYFVLEGFDFGVQMNVATFWRRGTGTRGTVLRTIGPVWDG 60 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMW 119 N+VW+IT G LFAA+P YA FSGFY+A++L+L L R F +R K++ RWRN W Sbjct: 61 NEVWVITGGALLFAAFPEWYATLFSGFYLALLLLLVVLIVRVCAFKWREKVDSERWRNGW 120 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 D IG F P L+ GVAF N++ GV + + ++ T +LLNPF LL G+V V + Sbjct: 121 DVVHVIGGFAPALLWGVAFSNIVAGVSIDENRWV----TTTLLELLNPFALLGGLVFVLL 176 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 G YL ++ G L A + A LV A +W Sbjct: 177 FWLHGTLYLALKVEGRLREDANRLAGILAWPALVAGAAFLLWYQLAH------------- 223 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 +++ + A+ + L + R + AF ++ + Sbjct: 224 --------------------SHSALTLIPLAVAALGLLAVVPLNRQGREGLAFGATTAAI 263 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ++T +FP+V+P++ SLT+ +A+S+ TL VM V +P++L YT W Y Sbjct: 264 TGAVITLFGGLFPYVLPATNDAANSLTVANASSTGHTLTVMLVALCVFMPVVLAYTVWTY 323 Query: 360 WKMFGRITKEDIERNTHSL 378 R++ ED L Sbjct: 324 RVFRHRVSDEDSPAPGAEL 342 >UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 Tax=Actinobacteria (class) RepID=A1R5L7_ARTAT Length = 360 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 181/374 (48%), Gaps = 38/374 (10%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E+L IW++ + VL G+ +GFD+GVGML + RN+T+RR+++N+I P WDGN+VWL Sbjct: 2 ELLPTIWFVAIAVLWTGYLFLEGFDLGVGMLMKLFARNNTDRRVLLNTIGPVWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TA GA FAA+P+ YA+ FS Y+ ++ VLA+L FR V F+YR K++ WRN WDW I Sbjct: 62 LTAAGATFAAFPLWYASLFSTLYLPLLAVLAALIFRAVAFEYRGKVDSESWRNRWDWAIA 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 IGSFV IG A G+P + + +G + + LL G V + Sbjct: 122 IGSFVAAFGIGAALALTTTGLPLDANGDR----SGGPMSWFSGYALLGGFGVVAFALVHA 177 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 +L ++T GE+ R R V ++ V V + Sbjct: 178 LAFLALKTDGEVRYRARRWFVRLVPVAVLPMFGWMVAVQF-------------------- 217 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 + P WA+ VV +L AR AF + C Sbjct: 218 --------------LSGKPWTWALVVAAVVAVVLAWRLARTGSEGRAFSALGAFIVCATA 263 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + A FP V+PS+ +LT+ +A+SS TL +M+ VA V +P+++ Y +W YW Sbjct: 264 SIFGAAFPVVIPSTIDPAFNLTISNASSSDYTLGLMSIVAAVGLPLVIAYQSWTYWVFRR 323 Query: 365 RITKEDIERNTHSL 378 R++ I L Sbjct: 324 RVSAAHIPEAHGFL 337 >UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Bacteria RepID=Q2IFY9_ANADE Length = 349 Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 201/362 (55%), Gaps = 31/362 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++LVGVL+ G+AV DGFD+GVG+L+ F R++ ER++ + +I P WDGN+VWL+T Sbjct: 3 LNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLF-ARDEEERQVHVKAIGPVWDGNEVWLLT 61 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P+VYA FSGFY+A++L+L +L R V ++RS+++ WR +D +G Sbjct: 62 GGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRSQLDGAAWRRGFDLAFGVG 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P +++GVA GN+L+GVP + + G+F LL+P+ +L G+VS+ M GA Sbjct: 122 SLLPAVLLGVAVGNVLRGVPVTAAQ----EWAGSFLGLLHPYPVLVGLVSLSMFTLHGAL 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L+++ G L R +A+A + + Sbjct: 178 WLRLKAEGALEARMARWVPRLWGAFAATYAIATAASLVEAPHLFAGAL------------ 225 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 P+ A+ L V + +R A AF+ SSL + +IL A Sbjct: 226 --------------ANPLFLALTLLVVASIGAIPVLSRRGAAGKAFLASSLAIVSMILVA 271 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 ++MFP ++PSS LT+++A+SS TL VM +A+V +P+++ YTA Y G++ Sbjct: 272 AVSMFPRLVPSSIDPAYDLTVYNASSSPRTLAVMLVIALVGMPLVIAYTALVYRVFRGKV 331 Query: 367 TK 368 Sbjct: 332 RP 333 >UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAP6_PARUW Length = 310 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 99/337 (29%), Positives = 170/337 (50%), Gaps = 32/337 (9%) Query: 34 MLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILV 93 ML F + D ERR+M+NSI P WDGN+VWL+TAGGALFA +P +YA S FYV ++ + Sbjct: 1 MLHLF-AKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMAL 59 Query: 94 LASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYL 153 L++L FR V ++RSK + WR WD +GS + ++G+ GNL++G+ + Sbjct: 60 LSALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDG---- 115 Query: 154 RLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLV 213 + G LL P+ LL G ++V + + G+ Y+ M+T GE H R R A + ++ Sbjct: 116 YKEFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKAVSCIIFFII 175 Query: 214 CFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGV 273 +A+ + + + + F + P + I + + Sbjct: 176 TYAITTMATLIYMPHMIEA--------------------------FRHNPFFFIIALINL 209 Query: 274 VLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMN-ASLTMWDATS 332 + K + AF+ S L + C++ I +P V+ S + SLT++++ S Sbjct: 210 LAIANIPREIYFGKDSRAFICSCLNIICLLALYAIGTYPNVIRSIDQPDVLSLTIYNSAS 269 Query: 333 SQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 S TL ++ +A++ VP+++ YT Y+ G++ + Sbjct: 270 SVKTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKID 306 >UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSG2_ACIC1 Length = 348 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 174/365 (47%), Gaps = 30/365 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + + VL W+ L+G+L G+ +GFD GV ++T + +++ +RR+ +NS+ P WDGN+ Sbjct: 1 MSFGVLDTTWFSLIGLLWAGYLFLEGFDFGVALITPLVSKDEIDRRMCLNSVGPFWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI AGGA FAA+P+ YA FSGFY+A+ L+L +L R V F++R+K WR WDW Sbjct: 61 VWLIVAGGATFAAFPLWYARLFSGFYLALFLILLALIARGVSFEFRNKDHRPAWRRTWDW 120 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 F+GS +PP V GVAF NL+ G+P + Y G LL+P +L G +V ++ Sbjct: 121 ANFLGSLIPPAVWGVAFTNLVVGLPLDSGG----VYRGGLAGLLHPIAVLGGAATVALVS 176 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L ++T L RTR+ A + + + Sbjct: 177 FHGANFLLLKTSSGLAHRTRSVAVPLGVAATLLTGAVVLA-------------------- 216 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 V G L + A+ GV + AF + +L Sbjct: 217 ------VALTRGKALPEALPGVVPLAMAVAGVAGVAAGTFLVARARDGAAFAATGGSLLL 270 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + MFP V P S+T+ A S TL VMT VA + P++L Y W YW Sbjct: 271 TMGAVFARMFPTVFPDFHHPAHSVTIAAAASGHYTLVVMTIVAAIFTPLVLAYQGWTYWV 330 Query: 362 MFGRI 366 R+ Sbjct: 331 FRRRL 335 >UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Actinomycetales RepID=D1BV47_XYLCX Length = 362 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 133/373 (35%), Positives = 197/373 (52%), Gaps = 44/373 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRN-----DTERRIMINSIAPHWDGNQ 61 L +W++L+ VL G+ V +GFD GVGML R ERR++IN+I P WDGN+ Sbjct: 3 LSILWFVLIAVLWTGYLVLEGFDFGVGMLLSIFPRGTAKQKHDERRVLINTIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGA FAA+P YA FSGFY+ ++L+L +L R V F+YR KI W +D Sbjct: 63 VWLLTAGGATFAAFPEWYATLFSGFYIPLLLILVALIVRVVAFEYRGKIASAVWARRFDV 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + IGS+VP ++ GVAF NL++GV +VD Y G F+ LLNPF LL G+ ++ + + Sbjct: 123 LLQIGSWVPAVLWGVAFANLVRGVQLDVDHQ----YVGGFWALLNPFALLGGLTTLVLFL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G+ +L ++T GEL LR R A +L +V VW Sbjct: 179 LHGSVFLALKTDGELRLRARTFAARLSLAAVVIAGGWAVWAQVA---------------- 222 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 + WA A+ + + ++T + +WAF S++ + Sbjct: 223 ------------------FSVTWTWAAVAVAALCLVGVVVTNARGRESWAFTLSAVAIVA 264 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ +M+P VMP SL++ A+S+ TL VMTWVAV+L P+++ Y +W YW Sbjct: 265 AVVLIFGSMYPDVMPG-LDGGPSLSIAAASSTPYTLTVMTWVAVILTPVVIAYQSWTYWV 323 Query: 362 MFGRITKEDIERN 374 R+T D+ Sbjct: 324 FRRRLTTSDLPAP 336 >UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Aquificales RepID=B4U7P7_HYDS0 Length = 346 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 196/365 (53%), Gaps = 31/365 (8%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L+ +W+L+ GV LIG+++TDGFD+G F+ + + +R + NS+AP WDGN+VWLI Sbjct: 10 TLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFM-KKEYDRIALYNSVAPVWDGNEVWLI 68 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 GG LFAA+P VYAA+FSGFY+A++LVL +L R V F+YR+K E WR+ +D+ ++ Sbjct: 69 AGGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWL 128 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 G+ +P ++ GVA GN + GVP + D Y G FF LL P L G+VS M GA Sbjct: 129 GNVLPAILFGVAVGNAVVGVPIDQD----AVYHGTFFTLLRPVPLAMGLVSFFMFAMHGA 184 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 YL ++T G + + A ++ + ++ L M Sbjct: 185 AYLLLKTEGSVFEMAKKYASISVIGYVISVILTNALAMQEAPFLYK-------------- 230 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 N+ PIL+AIP + V +L + + K S L A +L Sbjct: 231 ------------NYFTYPILFAIPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLN 278 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 A FP +M SS + SLT+++A+SS LTL VM V V+ +PI++ YT + Y G+ Sbjct: 279 VACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFSGK 338 Query: 366 ITKED 370 ++ E Sbjct: 339 VSGEK 343 >UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 Tax=Gammaproteobacteria RepID=B2SK06_XANOP Length = 339 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 161/374 (43%), Gaps = 36/374 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M VL W+ ++G ++ + V DGF +G+G+L F +++ + +M+N+ AP WDGN Sbjct: 2 MDMATVLTVAWFAVIGFGVLMYVVLDGFVLGIGILAPF-RKDEAQLDLMMNTAAPIWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 + WL+ G L AA+P Y S Y+ ++L++ +L FR V F++R K R R +W Sbjct: 61 ETWLVLCGAGLLAAFPKAYGVILSALYLPVLLMVMALVFRGVAFEFRFKAH--RSRRLWS 118 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 +GS + GV G L+QG+P Y G + +PF +L G V Sbjct: 119 HAFAVGSILATFAQGVILGALVQGLPI-----KHDRYVGGIWGWFSPFAMLTGAALVFGY 173 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 G+T+L ++T G + R ++ + L L W+ + + Sbjct: 174 ALLGSTWLILKTEGHVQQLARQLSRPLTISVLTFIGLVSAWLPSLQSHVMER-------- 225 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 W + ++ + +V L T A F+ + Sbjct: 226 --------------WFSGAHYLWLMPVPLLVAIVGFALWRATDAERSEALPFLLAMGLFV 271 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 L + M+P+++P T+W A + + + V+L+P+IL YT W Y Sbjct: 272 LGFLGLVLGMWPYLVPPVY------TIWQAAAPPSSQLFVMVGLVMLLPLILGYTVWSYH 325 Query: 361 KMFGRITKEDIERN 374 G++T ++ + Sbjct: 326 VFRGKVTTDNGYHH 339 >UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Marinomonas RepID=A6W2X5_MARMS Length = 337 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 158/360 (43%), Gaps = 33/360 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L ++L++G + + + DGFD+G+G+L + ++ ER ++ SI+ WDGN+ WL+ Sbjct: 4 LALFYFLVLGFAIFMYVLLDGFDLGIGILYPWFNQD-GERDHLMRSISHVWDGNETWLVF 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G LFAA+P YA S FY+ ++L+L +L FR V F+YR K + + R WD+ G Sbjct: 63 GGVVLFAAFPAAYAGITSTFYLPIMLMLFALIFRGVAFEYRFKSDTS--RPYWDFAFSAG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + G+ G+++QGVP VD + + L PF +L G + A Sbjct: 121 SAIAAFCQGMLLGSIVQGVPVGVD-------SLSSLHWLTPFSILTGFAVMAGYALLAAC 173 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL M++ G + + L+T++ + VW + + Sbjct: 174 YLFMKSRGRIQKHAAKLGKQLLLITILAMVIVSVWTIASQVEIRQRWFSGVNFLW----- 228 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + PI+ + A+ L + T + F +++ Sbjct: 229 ------------LSPLPIITLVVAVLAWRDLNSHATGTVHHEGRPFWYAATLFLLGFAGL 276 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + +FP+++P LT +A S +L + + VP+I YT W Y G++ Sbjct: 277 VVGLFPYLIP------RQLTFMEAASPDSSLLFLLPGICIFVPLICTYTLWGYRVFSGKV 330 >UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Lactobacillales RepID=B1MXQ3_LEUCK Length = 337 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 33/369 (8%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 +L IW++L+GVL GF +GFD G+GM R+ +R + +I P+WD N+VWL Sbjct: 2 TILEIIWFVLIGVLWAGFFFLEGFDFGIGMQFALNARDQKDREALYQAIGPNWDANEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TAGGA FAA+P YA+ FSGFY+ + +VL SL +R V F++R + + +W+ I Sbjct: 62 VTAGGATFAAFPAWYASLFSGFYLMLFIVLLSLIYRGVSFEFREHMPTVQGTQLWERLIA 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 + SF+ P +G+ F ++ G+P + + FF + PF L+ GV M G Sbjct: 122 LTSFLVPFFLGMIFTAMVSGMPIDARGN----LSAGFFDYVTPFSLVGGVAVSLMSYVHG 177 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 Y ++R G+L R + + L AL V + + D Sbjct: 178 LNYTRLRIDGKLRTRALKQLEYLYPILLAGEALFAVLLFFYTD----------------- 220 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 + L + + + + +L + FV S LTL +++ Sbjct: 221 -----------FIQTQTVWTLSILVVIVLTTVIGWLLAIKQKMEKLPFVLSGLTLVEVVV 269 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + +FP VM + +L + + +SS TL VMT V V +P+ L Y W +W Sbjct: 270 LLFVGLFPRVMVA-NNPLHTLNIMNTSSSTYTLKVMTIVVVTALPVTLGYQIWSFWVFRK 328 Query: 365 RITKEDIER 373 RI + Sbjct: 329 RIVSHKVVE 337 >UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteria RepID=Q1J2Z7_DEIGD Length = 365 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W+ L G++ + DGFD GVG+L FL RN+ +RR +I ++ P W N+VW+I Sbjct: 3 LPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVIL 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G +FAA+P+ Y A +G Y L+L +L R V F+YR++++ RWR WD FI Sbjct: 63 AAGVIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFIT 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + +P + GV N+++G+P + G+ + F +L G+ ++ + + GAT Sbjct: 123 NLLPAFLWGVIMANMVRGLPI----GEGARFQGSPLDAFDLFSVLGGLSTLSLFVLHGAT 178 Query: 187 YLQMR--TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 YL +R T LH R R A V + + Sbjct: 179 YLLLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSE-------- 230 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 W PA V L L + + AF + LT+ Sbjct: 231 ---------------------WLFPAGAAVNLALIWLALTLRRDRLAFAATGLTIVFSTA 269 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 T ++++P +PS+ +LT+ A S TL +++WV++ +P+I+ Y AW Y+ Sbjct: 270 TIFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQAWNYYVFRQ 329 Query: 365 RITKEDIERNTHS 377 R+ + D + Sbjct: 330 RVQERDEQIPGGG 342 >UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUS4_9CHLB Length = 331 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 175/367 (47%), Gaps = 39/367 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW++ + +L + +GFD G G+L F+G +D ERR +IN+I P W GN+VWL++ Sbjct: 3 LHSIWFIFIALLFTILFLLEGFDFGTGILLPFMGSDDRERRSVINTIGPFWLGNEVWLVS 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FAA+P YA+ SGFY +L+L SL FR F++RSK + + +W IF G Sbjct: 63 AGGAMFAAFPGWYASLLSGFYPLFLLMLLSLIFRGAAFEFRSKFSNPALKRVSEWIIFGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S VP L+ GV N + GVP + YTG +LLNPF L G S GA Sbjct: 123 SLVPALLWGVILSNFISGVPVDASGN----YTGALSKLLNPFALAGGAASALTFTLYGAL 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T G + R A+ + + + + + P+ Sbjct: 179 FLSLKTSGRVKERAIGIAKKLWAPATLSLMVCIACSVTVTSIKPGILPLLSLLSLAPV-- 236 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 I+ + +++ AF+ ++L + L Sbjct: 237 ---------------------------------IVLLQKNRSGVAFIMTALAIIFTALAI 263 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 ++P V+ S+ SLT+++A+SS+ TL+++T VA++ P++++ YW R+ Sbjct: 264 FTNLYPRVLVSNLNPAWSLTIYNASSSEYTLSILTVVALIFTPLVIIAQCLSYWVFRERV 323 Query: 367 TKEDIER 373 + + Sbjct: 324 STDSELE 330 >UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Mobiluncus RepID=C2KPN0_9ACTO Length = 387 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 120/398 (30%), Positives = 189/398 (47%), Gaps = 63/398 (15%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 +L+ +W++LV VL G+ + +G+ +G GML R +G++DTER ++ SI PHWDGN+V Sbjct: 1 MAIILQILWFILVAVLWAGYLILEGYGLGTGMLMRIIGKSDTERGQIVRSIGPHWDGNEV 60 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+TAGGA FA+ P YA FSG Y+A+ L+L L R ++R+K++ WRN WDWG Sbjct: 61 WLLTAGGATFASSPEWYAVMFSGMYLALFLILVCLIVRISAIEWRNKVDSESWRNKWDWG 120 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFN-------------------------------VDE 151 I +++ P+++G AFGNL+ G+ Sbjct: 121 HTISAWLVPILLGTAFGNLVSGMMIAVVDPKQPFTPIPPDEIDPSKHVHNLIGLGDMPLG 180 Query: 152 YLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVT 211 L + + F LL G+V + +TQGA +L ++T E+ R+ A A ALV+ Sbjct: 181 QLLSLFYNVPSPINGVFNLLGGLVIASLCLTQGALFLSLKTTDEVRERSEALAPKLALVS 240 Query: 212 LVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPAL 271 A+ +W + G + Sbjct: 241 TALTAVFAIWGTFAYMG-------------------------------AGFIFALIFLVI 269 Query: 272 GVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMN-ASLTMWDA 330 V ++ + A AF+F+S +A + +FP+VM SS SLT+W++ Sbjct: 270 AAVCLIVGLFFAFQRSIGKAFIFNSAGVAFAVAWVFAMIFPYVMKSSINTEKYSLTIWES 329 Query: 331 TSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 +++ T VMT AV+LVP++L YT W + RI+ Sbjct: 330 SATPGTQIVMTIAAVILVPVVLGYTIWSVYMFRSRISP 367 >UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 Tax=root RepID=C0R3J3_WOLWR Length = 340 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 99/368 (26%), Positives = 161/368 (43%), Gaps = 35/368 (9%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 L IW LL+ + ++ + + DGFD+G+G+L F +D R MI+SIAP WDGN+ Sbjct: 6 SLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAP-SDKCRDHMISSIAPFWDGNET 64 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+ GG LFAA+P+ Y+ FY+ +I++L L R V F++R K E ++R +WD+ Sbjct: 65 WLVLGGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAEG-KYRRLWDYA 123 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 GS G+ G + GV N ++G F + F ++ G+ + Sbjct: 124 FHFGSLGAAFCQGMILGAFIHGVEVN-----GRNFSGGQFDWASAFSVMTGIAVIFGYAL 178 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 G+T+L M+T R A + L V Sbjct: 179 LGSTWLIMKTENITQEWARKVASYTLGFVGIFMGLVSVVT-------------------- 218 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 P E ++ + NF + + +L + F S Sbjct: 219 PFLNERIKNFWFSMPNF--YYLFSIPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMG 276 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 L GI+++P+++P T+ DA +S +L++M V + L+PIIL YT +CY+ Sbjct: 277 YLGLGISIYPWIIP------FQYTILDAAASGPSLSLMLIVIIPLLPIILTYTGYCYYVF 330 Query: 363 FGRITKED 370 G+ E Sbjct: 331 RGKSNYEH 338 >UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=C2KAY6_9LACO Length = 338 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 176/369 (47%), Gaps = 34/369 (9%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 L+ +W++L+GVL GF DGFD GVGM + L N+ ER ++ +I P WDGN+VWL Sbjct: 2 SFLQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 ITAGGA+FA++P YA FSG+Y+ ++L+L L R V F++R+K +++WD + Sbjct: 62 ITAGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCA-PYQKHIWDNAMA 120 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 IGS + + GV F ++++G+P + + + +FF N F ++ G+ + G Sbjct: 121 IGSVIATFLFGVMFISMIKGMPIDAKGNI----SASFFDYFNWFSIVGGIALTLLCYLHG 176 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 Y+ ++T G + R + AQ V V + + +++ D V Sbjct: 177 LNYITIKTKGVISDRAQNYAQALYWVLYVGEVVFALLLIFQTDFMRVHPI---------- 226 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 L V + + ++K A S LTL ++ Sbjct: 227 -------------------ATLICLVLIVGFSVAAHVATFINKQGMALACSGLTLISLVA 267 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 +FP VM SS L + A+SS TL VMT +LVP IL YT W YW Sbjct: 268 LIFCGLFPRVMISSISSKYDLLIHSASSSNYTLIVMTVATCILVPCILAYTIWAYWIFRK 327 Query: 365 RITKEDIER 373 RI+ I Sbjct: 328 RISMPRIGE 336 >UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Methanosarcina RepID=Q46G86_METBF Length = 347 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 107/372 (28%), Positives = 188/372 (50%), Gaps = 30/372 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +++L IW+ L V+ + + D F +G G+L F+ + +R + +S+ P W GN+ Sbjct: 5 LTHDMLAIIWFFLWCVIWGVYFIVDSFSLGAGLLVPFIATDKAQRMQIQSSVGPFWGGNE 64 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI A G FAA+P+V++ F+ Y+ M+L+L L R + +Y K E + + W Sbjct: 65 VWLILAAGGTFAAFPLVFSKMFTFLYLPMMLLLIGLIARGISIEYLHKDENPHIQKILMW 124 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 G F GS + LV+GVAF N +G+ Y G L +P+ L+ GV+ V M + Sbjct: 125 GWFAGSLLISLVLGVAFANFFKGLEIASGG----VYIGTLIGLFSPYALIGGVLFVLMSV 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 T GA ++ ++T G + ++ A+ +AL+ LV + + GI+G+ Sbjct: 181 TSGAFWINVKTEGAIAIKAGDLAKKSALIVLVLALVYLAYSFMGIEGFT----------- 229 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 N++ P L+ +P L VV +L + A+ D+ AF + L Sbjct: 230 ---------------TNYSAMPALYLLPGLAVVTAVLAVFFAKKDRIFPAFCSNLLAFLF 274 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++ + +++P+++ SS + +++A SS +TL+VM A+V VPII++Y W Y Sbjct: 275 VVESGLASIYPYMLKSSVSSEYGIDIFEAASSHMTLSVMLGGALVFVPIIIIYQLWAYTL 334 Query: 362 MFGRITKEDIER 373 +I + D Sbjct: 335 FREKIKETDQVE 346 >UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=A2RMA6_LACLM Length = 331 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 34/362 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ W+++VGVL GF +GFD GVGM + ++ E I SI P WD N+VWL+T Sbjct: 4 LQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLT 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGA+FA++P YA+ FSGFY+ + L+L L FR V F++R + + +W + + Sbjct: 64 AGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVA 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF P + G+ F ++QGVP + + T F +N ++ GV + + G Sbjct: 124 SFAIPFLFGLMFTGMIQGVPMDAKGNV----TATFTTYVNFLSVVGGVAVMLLAWLHGLN 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL ++T G+L R A V + + + D + + + Sbjct: 180 YLALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALIVIL 239 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 +V L+ R K AF+ S LT ++ Sbjct: 240 TLVAH-----------------------------LSVRSGKEMSAFLASGLTFIALVALI 270 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 +FP VM ++ S+ + +A+S+ TL MT + + ++P +L+Y W Y+ RI Sbjct: 271 FQGIFPRVMIAT-NPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGWTYYIFRKRI 329 Query: 367 TK 368 K Sbjct: 330 QK 331 >UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNI3_9CAUL Length = 345 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 155/368 (42%), Gaps = 27/368 (7%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L+ IW L+ V ++ + DGFD+G+G+L F ++ ER +M+N+IAP WDGN+ WL+ Sbjct: 5 LQLIWAGLIAVAVLLYVTLDGFDLGIGILFPF-AKSKEERDVMMNTIAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG L AA+P+ Y+ Y+ ++L+LA L R V F++R + R R W G Sbjct: 64 GGGGLLAAFPLAYSVLMPALYLPILLMLAGLILRGVAFEFRFRARN-RGRKFWTQMFSGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + + G+ G +QGV D + G F P+ LL V G Sbjct: 123 SILTAVAQGLVLGGFIQGVTVREDR-----FAGGPFDWFTPYTLLVAAGLVAGYALLGGA 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T LH + ++++V V V + + D Sbjct: 178 WLMMKTKDNLHGDAKRWTSISSVVVTVLLVAVSVATLLIHPRVAARWGFDLGDGFALDAS 237 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 ++ L+ ++W +R W FV + L L Sbjct: 238 VLMPLLPIPLLGLAGLALVWV--------------MSRRGSHRWPFVGAILVFLSGYLGL 283 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + P+V+P +L A + L +M V ++P+IL YT W YW G+I Sbjct: 284 AVGFAPYVVP------YALDFRQAAAPDNALGLMLVGTVAILPLILAYTGWVYWVFRGKI 337 Query: 367 TKEDIERN 374 +E + Sbjct: 338 DEEAGYHH 345 >UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=Q67RR5_SYMTH Length = 342 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 183/363 (50%), Gaps = 35/363 (9%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + +E+L+ IW+ L G+L + DGFD+G GML R D E+ +I S+AP WDGN+ Sbjct: 1 MSHELLQVIWFALWGLLWAIYFGLDGFDLGSGMLAGIF-REDEEQHHLIGSLAPIWDGNE 59 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNMWD 120 VW+ITAGG FAA+P +YA FS Y+ + ++L L FR V ++ ++ + W+ +W Sbjct: 60 VWVITAGGVTFAAFPKLYATMFSSLYLPLFIILFGLMFRAVAIEFYHHMDYDAGWQKIWG 119 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W + + SF+ + GVAFGN+ QG+ + Y G LLNP+GLL GV+ V Sbjct: 120 WVLSVASFLVAFLFGVAFGNIFQGMLLDAQG-----YHGTVLSLLNPYGLLTGVLFVVAF 174 Query: 181 ITQGATYLQMRTVGE-LHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 + GA++L + + + A+ LV A V+ + Sbjct: 175 LMNGASWLAHKAPDDGFRAKADTFAKRMWPAVLVVAAAWLVYTPFAT------------- 221 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + N+ P L+ +PAL VVL +LT + + A A + SLT+ Sbjct: 222 --------------RLMENYLKVPALFVVPALAVVLLVLTRVYLEKGRHALALLMGSLTV 267 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 ++ A I +FP + PS SLT ++++SS TL M WV VV +P +LLY W Y Sbjct: 268 GITVVAAVIGLFPNMFPSRIDPAYSLTAFNSSSSHYTLQFMFWVVVVFLPFVLLYQIWAY 327 Query: 360 WKM 362 Sbjct: 328 RLF 330 >UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Coriobacteriaceae RepID=C8WK01_EGGLE Length = 345 Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 116/375 (30%), Positives = 181/375 (48%), Gaps = 34/375 (9%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++ + +W+LL+ VL+ G+ V DGFD+G G+L F+ + D E+ ++ SI P WDGN+ Sbjct: 1 MEITFFQGLWFLLIFVLIAGYFVLDGFDLGAGVLYPFVAKGDEEKAVVRTSIGPVWDGNE 60 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TAGGALFAA+P YA FSGFY+A++LVL L R V +YR +W +WD Sbjct: 61 VWLLTAGGALFAAFPAAYATTFSGFYLAVMLVLFGLIVRAVSLEYRGIDH--KWAKVWDG 118 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 F+GS +P L++GVA GN+ G+P + + L+ PF LL G++ + M + Sbjct: 119 CFFVGSLLPALLLGVAVGNIYAGIPMSANGDYTGI---PLLGLITPFTLLCGLLGLSMFL 175 Query: 182 TQGATYLQMRT--VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 QGA++L ++ +L R +V+LV F + + GI + Sbjct: 176 AQGASWLALKAPKPSDLQARAAKLRFPLQIVSLVLFVAVTAYALLGIQPAMDPLLGAVR- 234 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 V + D AF+ S Sbjct: 235 -------------------------WLLAALFVVAIVASVFFAKSKDCDLGAFIAQSGAA 269 Query: 300 ACIILTAGIAMFPFVMPSSTMM-NASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 A ++L +MFP + +S ++T A SS+LTL MT + V +P++L+Y Sbjct: 270 ALLVLLLAASMFPNFVVASADSVGPAITAMSAASSELTLMWMTIITCVGLPLVLVYHVII 329 Query: 359 YWKMFGRITKEDIER 373 Y GR+ +ED+ Sbjct: 330 YRTFRGRVKEEDLAH 344 >UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamydiaceae RepID=Q255C4_CHLFF Length = 353 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 98/362 (27%), Positives = 162/362 (44%), Gaps = 21/362 (5%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 +L W+ ++ V + +++ DGFD+G+ + F+ R D ERR+++NSI P WDGN+VW Sbjct: 6 ASMLPIAWYAILVVAVFAYSLGDGFDLGLSTIY-FISRADEERRVLLNSIGPVWDGNEVW 64 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 LI G LFA +P Y A S FY+ + ++ FR ++RSK E T+W+ WD Sbjct: 65 LIIIFGGLFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVF 124 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 + +G GN++ G+P + ++ P+ L G + V Sbjct: 125 CVSGIAISFFLGAIVGNMILGLPMSPTTQYSSL---SWLLFFRPYAFLCGALVVSAFSIH 181 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 GAT+ M+T GELH R LV + L + I S P Sbjct: 182 GATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLLIGTTLVMIPQTKGYSFPIGSFIGVP 241 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 P+L + A+ + L T + AF++SS L +I Sbjct: 242 -----------------TYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLI 284 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 L++ +FP ++ S+ S T+++A +S TL + + +V +P I+ Y + Y Sbjct: 285 LSSVALVFPNLLFSTVSSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFK 344 Query: 364 GR 365 G+ Sbjct: 345 GK 346 >UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 Tax=Proteobacteria RepID=B0UGT2_METS4 Length = 347 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 158/364 (43%), Gaps = 37/364 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W +++GV + + V DGFD+G+G++ ND R M+ S+AP WDGN+ WLI Sbjct: 14 WLPLLWAVILGVAITMYVVVDGFDLGIGIMF-TRAENDNWRDRMMFSVAPIWDGNETWLI 72 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G LF + + YA Y+ M+++L +L FR + F++R K + + + +WD+ Sbjct: 73 LGGAGLFCVFSVAYAILMPALYIPMLIMLIALVFRGIAFEFRFKADTS--KRIWDYAFHY 130 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + G+ G +QG + + G + L PF L GV V GA Sbjct: 131 GSLLATFAQGIVLGAFVQGFEVGGRQ-----FAGGTWDWLTPFSLATGVGLVCGYGLLGA 185 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 T+ M+T G L + R ++ + T+V A+ WV + + Sbjct: 186 TWCVMKTTGALEIWARRKSEQFLVATIVMMAIVSAWVPFLGRQIEARWFS---------- 235 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + + L +P L + + + F+ S + L Sbjct: 236 -------------WPSILALVPVPLLTAFVAYMIYRSVNDGHHTAPFLLSIVMFLLGFLG 282 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I++FP+++P S+T+W A ++ + +PI YTA+ Y+ G+ Sbjct: 283 LVISLFPYIVPP------SITIWQAANTVDSQMFALIGYAFALPITFAYTAYAYYVFRGK 336 Query: 366 ITKE 369 + KE Sbjct: 337 VAKE 340 >UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Thiomonas intermedia K12 RepID=C7HZB4_THIIN Length = 341 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 39/370 (10%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + VL +W+L++G+ ++ + V DGFD+GVG+L+ F+G + R++M+ S+ WD N+ W Sbjct: 10 HHVLATVWFLIIGLFMVFYVVLDGFDLGVGVLSLFVG--ERRRKVMMASLGSIWDANETW 67 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ GG LF A+P+ Y G Y+ +IL+L R V F++ E + + W Sbjct: 68 LVVIGGTLFGAFPLAYGTVLHGLYIPIILMLLGFMLRGVSFEFH---ELSERKAFWGAMF 124 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 +GS + + G A G LL GV + Y G+ ++ L+PF ++ + V Sbjct: 125 GLGSLLATIAQGFALGGLLNGVKV-----VNGVYVGSVWEWLSPFSVIVVLGVVAGYAML 179 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 G+TYL ++T ++ Q+ A + L A+ VW + Sbjct: 180 GSTYLIIKTKDDIQAGCYQRGQLLAWIMLAVGAVVTVWTPLQFPQIFARWLT-------- 231 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 N +PAL ++ ++ + + FV++ L Sbjct: 232 ---------------IPNIYFFAVLPALALLSFVMLLRALKRQAEVAPFVWTMLIFLFSF 276 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 +P+++P SLT+ A S TL M +L+P+++ Y + Y Sbjct: 277 AGLAATWYPYIVP------GSLTIDQAASDSGTLVFMLIGIGMLIPVMITYNVYQYIVFR 330 Query: 364 GRITKEDIER 373 G+I + Sbjct: 331 GKIDPDAEHA 340 >UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitive n=32 Tax=Proteobacteria RepID=B6IQW9_RHOCS Length = 339 Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 103/368 (27%), Positives = 159/368 (43%), Gaps = 36/368 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L I+ + + + + DGFD+GVG+L + D +R +M+NS+AP WDGN+ WLI Sbjct: 8 LTLIFAGIGAFAVFMYVLLDGFDLGVGILFPWAPGGDADRDLMMNSVAPIWDGNETWLIL 67 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G ALFA +P+ YA Y+ ++L+L +L FR V F++R K + + R +WDW +G Sbjct: 68 GGAALFAGFPLAYAVLLPALYLPLLLMLIALIFRGVAFEFRFKADTS--RRLWDWSFHLG 125 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S GV G +QG Y G F L PF ++ GV V GA Sbjct: 126 SLFATFAQGVILGGFIQGFEV-----QGRDYAGGLFDWLTPFSIMTGVALVAGYALLGAA 180 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L M+T G L + A +A L LV A+ +W D + Sbjct: 181 WLVMKTDGALQDWSYRVAGLALLAVLVFIAVVSLWTPLHSDAIRDRWFS----------- 229 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N L +P L + R + FV + L Sbjct: 230 ------------LPNLYYLSPVPLLTAAVAAALFGALRRRRETAPFVLAMGLFLLSYLGL 277 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 I+++P+++P + T+WDA S + + L+P LLYTA+ YW G++ Sbjct: 278 AISLWPYLVPP------AFTLWDAASPPESQVFLLVGLAFLIPTTLLYTAFTYWVFRGKV 331 Query: 367 TKEDIERN 374 ++ Sbjct: 332 RPGAGYQH 339 >UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMS2_SYNFM Length = 343 Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 161/363 (44%), Gaps = 34/363 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++G L+ +A++DG D+GVG+L+ ++ ER +++ SI W NQ WL+ Sbjct: 8 LPEIWLAIIGFFLLYYAISDGADLGVGILS-LAATDERERGLIMGSIGSIWHDNQTWLVL 66 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LF A+P+ Y S YV ++ ++ L FR V F++R E +R +W +G Sbjct: 67 LGGMLFGAFPLFYGVLLSALYVPILCMIFGLVFRGVSFEFR---ENSRHPAVWSRCFGVG 123 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + L G A G LL + + G+ NPF L + + + G+ Sbjct: 124 SLIVTLSQGFALGGLLG-----GLDVREGVFKGSVLGWANPFSCLVALGVLCGYVMLGSN 178 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +T G + R+ T+ A+L+TL L ++ V K Sbjct: 179 FLVFKTAGPIQARSYRTSFAASLMTLGISILVHLFTAAKYPQMVRK-------------- 224 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 L + P L ++ ++ R + + ++ + + Sbjct: 225 ---------LTTLPEAYYIAVFPVLAAFCFVMLFVSLRRKRELAPLLCNAGIILFSFIGL 275 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + M+P ++P+ +T+ A +S+ TL M V VL+P+IL+YT + + G++ Sbjct: 276 SLGMYPDMIPNVVSSA--VTVHAAAASKDTLEFMLQVTSVLLPVILVYTGYKHRIFQGKV 333 Query: 367 TKE 369 T E Sbjct: 334 TTE 336 >UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobacteria RepID=B4RAL0_PHEZH Length = 341 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 98/363 (26%), Positives = 153/363 (42%), Gaps = 30/363 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++ + ++ + + DGFD+GVG+L F G + ER M++S+AP WDGN+ WL+ Sbjct: 5 LPLIWAGIIAIAVLMYVLLDGFDLGVGILFPFAG-SPAERDTMMDSVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFAA+P Y A Y+ ++++L +L R V F++ R + W G Sbjct: 64 GGGGLFAAFPAAYGALMPALYIPILIMLMALILRGVAFEF-RLRGRRRGKRFWTAAFAGG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S L G G +QGV + + G F L P+ LL + GAT Sbjct: 123 SIAATLAQGFVLGGFIQGVTLREGQ-----FAGGAFDWLTPYTLLVAAGLLAGYALLGAT 177 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +T ELH R R A ++ T A+ V + + Sbjct: 178 WLIWKTEDELHGRARRWAWLSTAATAALLAVVSVATLLVHPRIAERWGFQDGGI------ 231 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N L AIP +G+ ++ R F+ + L Sbjct: 232 -----------NTGEILPLLAIPLVGLAGLIMVAAGLRRRSHGLPFLGAFAIFLSGYLGL 280 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + FP ++P +T A S+ L +M +L+P IL YTAW YW G++ Sbjct: 281 AVGFFPNIVP------YDMTFRQAASADNALGLMLVGVAILLPFILGYTAWVYWVFRGKV 334 Query: 367 TKE 369 + + Sbjct: 335 SAD 337 >UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomonas campestris pv. campestris RepID=Q4UWQ0_XANC8 Length = 339 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 150/367 (40%), Gaps = 38/367 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + E+++ + + ++ + V DG D+GVGML R+D +R +M SI P WDGN+ Sbjct: 5 LSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFA-ANRSDADRHLMAYSILPVWDGNE 63 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 WL+ GG+L A +P YA + YV ++++L +L R V +YR ++ R R + D Sbjct: 64 TWLVLGGGSLLAMFPSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDV 123 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 + S + GV G L GV + Y GN + L PF L GV V + Sbjct: 124 VFMVASLLATFCQGVVAGTYLAGVAHRAGQ-----YAGNGREWLQPFPLFCGVALVVGYL 178 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L R+ G+L R R A+V +V L VW+ Y + H + Sbjct: 179 LLGACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISV- 237 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 + + L + L R A + Sbjct: 238 -------------------------PLGTSVLGLMVAMYLLMRSRHAFLPLFAVLGVVVA 272 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 ++P V+P +T+ A S + VM VLVP L Y+++ ++ Sbjct: 273 TYAGVLAIVYPMVLPP------DITLAQAASPPASQGVMLLAFAVLVPCTLAYSSYGFYV 326 Query: 362 MFGRITK 368 G++ Sbjct: 327 FRGKVKP 333 >UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=53 Tax=Lactobacillales RepID=Q040K6_LACGA Length = 340 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 188/367 (51%), Gaps = 35/367 (9%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 + L+ +W+LL+G+L + F T+GFD GVGM T+FL RND E+ +M+ +I PHWDGN+VWL Sbjct: 6 DFLQLLWFLLIGLLFMIFYFTEGFDYGVGMATKFLARNDQEKHLMMETIGPHWDGNEVWL 65 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 ITAGGA+FA++ YA+ FSG+Y+ + L +L R V F++ + E +W +F Sbjct: 66 ITAGGAMFASFSDWYASLFSGYYILLFFTLFALIIRGVSFEFSAHAETEHGFRIWTSALF 125 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS + P + + FG+L+QGVP + + L + + ++NP ++AGV V + + G Sbjct: 126 WGSLLAPFFLTMMFGSLIQGVPIDAQGNMSL----SVWNIVNPLSVVAGVAGVLLCLIHG 181 Query: 185 ATYLQMRTVG-ELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 +L++R EL R + + LV + + + V + D + ++ Sbjct: 182 INFLRLRIDDPELSERAASLNEKLYLVAYLGEVVFALLVFFQTDFFKLRPISSTIITLI- 240 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 VVL + ++ +K AFV S LTL ++ Sbjct: 241 ----------------------------IVVLTAWSDISLIKNKQVAAFVTSGLTLVGVV 272 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 +FP V+ ++ SL + A +S+LTL VMT VA++L+PI L+Y W Y Sbjct: 273 GLLFNGLFPRVLIAT-DSAHSLLIKTAANSKLTLEVMTIVALILLPIALVYIIWSYVVFR 331 Query: 364 GRITKED 370 RI Sbjct: 332 RRIKVNQ 338 >UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax=Corynebacterium RepID=B1VE35_CORU7 Length = 321 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 116/366 (31%), Positives = 176/366 (48%), Gaps = 50/366 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W+ L+ L G+ + +GF GVG+L FLGR++ R MI +I P WDGN+VWLIT Sbjct: 5 LPTLWFGLIVFLFAGYFMLEGFGFGVGLLLPFLGRDEARRSAMIRTIGPVWDGNEVWLIT 64 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGGALFAA+P YA FSGFY+ + L+L L R VG ++R+K+ +WR D GI G Sbjct: 65 AGGALFAAFPAWYADMFSGFYLPLFLILLGLIVRIVGLEWRTKVNSAKWRAWCDAGIITG 124 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S++ P+V GVA NL+ G+P N + + L +P+ L+ V + G T Sbjct: 125 SWISPIVWGVAVANLVSGIPENA---------AHVYPLFHPYALVGAAALVCVFALHGLT 175 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +++++T G L + A+ ++V + +W G Sbjct: 176 FIRLKTAGVLRKEAQRFITPLAIGSIVFGGVFALWTQLG--------------------- 214 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 W L VV L ++ + WAF ++L + +++ A Sbjct: 215 -------------YGKAWTWVPLVLAVVGLLGSVAATVAQRDGWAFTATALAIVSVVVLA 261 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 AMFP + L +W A S+ TL +MTW V++ P +LLY + YW RI Sbjct: 262 FGAMFPML-------WTDLDIWQAASNPYTLKIMTWAGVIVTPFVLLYQGYTYWIFRRRI 314 Query: 367 TKEDIE 372 E + Sbjct: 315 VAEPVH 320 >UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteroidetes RepID=A5FA89_FLAJ1 Length = 358 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 173/386 (44%), Gaps = 44/386 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + F W++++ +L + V DG+D G G++ F + +++ + ++I P WD N+VWLI Sbjct: 1 MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG LF A+P +YA++FSGFY+ +I++L L FR +G + R +I W ++WD I Sbjct: 61 AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF----------------QLLNPFGL 170 S + L G+A GN+++GV + + +FF +++ F L Sbjct: 121 SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQANELGIIDWFTL 180 Query: 171 LAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYV 230 G+VSV + GA ++ +T L+ + + V Sbjct: 181 FLGIVSVVALTIHGANWIIYKTNSSLNPKLKK--------------------------VV 214 Query: 231 VKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAW 290 + + NF PILW P L V K Sbjct: 215 FVLNIVLLVLVCISLQIWHFIEPKPFHNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGH 274 Query: 291 AFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPI 350 F+FS+L L + +++FP V+PS+ +N SLT+++ + + L+ + + + Sbjct: 275 GFIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYGLSAGLSWFFIALFL 334 Query: 351 ILLYTAWCYWKMFGRITKEDIERNTH 376 +++Y Y G++ +DI H Sbjct: 335 VIIYFIIQYRVFSGKM--DDIGYGEH 358 >UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Rhizobiales RepID=B8ESY7_METSB Length = 335 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 41/370 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + W ++ ++ + + DGFD+GVGML + ND RR M+ +IAP WDGN+ WL+ Sbjct: 1 MTEFWTAVLAFTILLYVLLDGFDLGVGMLLALMP-NDRGRRHMLAAIAPVWDGNETWLVV 59 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 LF +P+VY+ S FY+ + ++LA L R V F++R K R WD +G Sbjct: 60 TATILFGVFPLVYSILLSAFYLPVFVMLAGLILRGVSFEFREK--SPHHRAFWDSCFILG 117 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S V + G+ G L++G+P Y G F L+ F LL G GA Sbjct: 118 SLVASFIQGMMIGALVEGLPV-----ENGRYAGGPFGWLSSFALLCGAGLCVGYALLGAG 172 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +T ++ L A+ V+ + + + Sbjct: 173 WLTRKTTQDVQALAFGILPSLLAGVLAFLAIIFVYSLLLDLAVMHRW------------- 219 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 P+L+ P +G+ ++ ++ R + F+ + A LT Sbjct: 220 -------------RERPVLFVFPLMGIAACVIMAVSIRRRRELLPFLSGASIFAAAFLTL 266 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVA-VVLVPIILLYTAWCYWKMFGR 365 ++ +P+++P S+T+ +A + + + M W A ++++PI ++YT Y+ G+ Sbjct: 267 AVSFYPYMIP------FSVTIAEAAAPRSSQAFMFWGAGLIVLPITIIYTLVVYFVFKGK 320 Query: 366 ITKEDIERNT 375 + + Sbjct: 321 VIDLESYDEG 330 >UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGP9_NAKMY Length = 338 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 188/364 (51%), Gaps = 36/364 (9%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W+++V GF V +GFD GVG L + +GR DTERR+ INSI P WDGN+VWLI Sbjct: 2 TLPTVWFVIVAFFWTGFFVLEGFDFGVGALHKVVGRTDTERRVAINSIGPFWDGNEVWLI 61 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 AG ++FAA+P YA+ FS Y+A+ L+LA+L R V F++R K WR+ W W + + Sbjct: 62 VAGASMFAAFPNWYASWFSALYLALWLLLAALIVRGVSFEFRGKFAAPAWRHTWGWTLTV 121 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + PL+IG+ G+LL G+P + +TG+F LL PFGLL G+ + + + GA Sbjct: 122 GSVLAPLLIGIGLGDLLAGLPIDAAGD----FTGSFLDLLTPFGLLLGLTLLTLSLLHGA 177 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L +RT G + R+RA + AL + +A VW++ Sbjct: 178 AFLTLRTTGPVLERSRALVRRLALPAVALVLVAAVWMVVLAA------------------ 219 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 A+ V + + FV +++++ ++ Sbjct: 220 --------------PGGWGYLAVAVPAVAVIAAAVTALPGRAGPATFVATAISIGALVAA 265 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + ++P ++ S+T SLT+ ++ SS +L VMT A VL P++LLY W YW R Sbjct: 266 LFVCLYPTLLVSTTDPAYSLTVTNSASSPYSLQVMTVAAAVLTPLVLLYQGWTYWVFRRR 325 Query: 366 ITKE 369 + E Sbjct: 326 LRTE 329 >UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Cyanobacteria RepID=Q2JM63_SYNJB Length = 349 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 173/370 (46%), Gaps = 37/370 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W+ ++G+ L + + DGFD+GVG+L+ ++T R I++ S+ WD N+ WL+ Sbjct: 10 FLPQVWFFILGLFLFLYVLLDGFDLGVGILS-LTASSETRRSILMTSLGNVWDANETWLV 68 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 GG+LF ++P+ YA + Y+ +++++ L R V F++R + + +W+ + Sbjct: 69 LMGGSLFGSFPLAYATILNALYIPLVIMVVGLILRAVSFEFRENADN---KLVWNLAFGV 125 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GSF+ L G A G++ +G+ + ++ G+ + L LL + + + G+ Sbjct: 126 GSFLAALGQGFALGSVFEGIRVDEAG----HFAGSPWDWLTWRTLLVALTLIQGYVLIGS 181 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 YL ++T GEL TA +A TL+ + Sbjct: 182 AYLIVKTTGELQETYYKTATIATWTTLLGAVFITISTPI--------------------- 220 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + +A A L + I AIP LG++L L + + R + V++ L A + Sbjct: 221 --MSEQARAQLFSPPLFYIFAAIPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIG 278 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 G +FP ++P S+T+++A +S +L M L+P+IL Y + Y G+ Sbjct: 279 LGFMVFPNIIPP------SVTIYEAAASPSSLVFMLTFIGFLIPVILSYNIYNYVVFRGK 332 Query: 366 ITKEDIERNT 375 I +++ Sbjct: 333 IVVQEVAAEE 342 >UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SP33_HAHCH Length = 331 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 149/365 (40%), Gaps = 41/365 (11%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 I+ LL+ V ++ + + DGF +GVG+L+ +L + D +R I I S++ WD NQ WL+ Sbjct: 4 ALIYLLLIAVGVLMYVLLDGFSLGVGILSPWLSKAD-DRAIAIKSLSHLWDSNQTWLVFG 62 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 G LFA +P YA S Y+ +IL+L +L FR V F++ K +R WD+ GS Sbjct: 63 GVVLFAGFPKAYATVLSQLYLPIILMLIALIFRGVAFEFYFKSHTSRG--WWDFSFSFGS 120 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 + L G+ G+L+QG ++ PF L+ V V G+ + Sbjct: 121 TLATLSQGIVLGSLVQGFSLEPQPSEQIA-------WFTPFSLMTAVALVCGYALLGSCW 173 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 L ++ G L + R ++ + AL VW++ + Sbjct: 174 LVRKSSGRLQVSVRRLGIISLFAVMFFLALVSVWMLLAQPQVFQRWLTWPTGL------- 226 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARM--DKAAWAFVFSSLTLACIILT 305 +L +P L + L R + + Sbjct: 227 ----------------LLAPVPLLSAYVGLRLWQMLRSGEGNDLKPLGLAMALFGLAFIG 270 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 MFP+++P LT+W+A + + + + V+ +PI++ Y + Y G+ Sbjct: 271 LAAGMFPYIIP------GQLTIWEAIAPERSTSFTLIGIVLFLPIVIAYNIYNYRVFSGK 324 Query: 366 ITKED 370 +D Sbjct: 325 TNTQD 329 >UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZB4_POLSQ Length = 328 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 161/356 (45%), Gaps = 38/356 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + IW L+ +++ + + DG+D+GVG+L + R+D ER M++S+ WD N+ WL+ Sbjct: 5 ITLIWGGLLAFVVLAYIIFDGYDLGVGILIPLM-RSDQERAQMLSSV-RLWDANETWLVL 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GG LFA +P+ Y+ F Y+ +I +L SL R V ++R + +++ +WD F+G Sbjct: 63 GGGGLFAVFPLAYSIIFPALYLPLIGMLLSLVIRGVVSEFRWQNKQSAM--IWDSLFFVG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF+ G+ G L+QG+ + Y G L PF ++ G+ GAT Sbjct: 121 SFLAACFQGMILGALVQGIQV-----VDHAYAGGPLDWLTPFSVMTGIALALGYSLLGAT 175 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L ++T GEL + + +V + ++ + +W + Y+ + Sbjct: 176 WLVLKTDGELQNKAFSLIKVLGSLMVLMVGVVSLWTPFLKQDYLSRWFA----------- 224 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + + +P L + FV + + Sbjct: 225 ------------WPQAIYVLPVPLLLAAAIFILFRAVNRRNTWVPFVATISIFLLSYIGL 272 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 I++FP+V+P + +T+W+A + + + ++LVPIIL+YT + +W Sbjct: 273 LISIFPYVVPDT------ITLWEAAAPLSSQKFLLPGTLILVPIILIYTTYAHWVF 322 >UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=root RepID=B2IDR4_BEII9 Length = 337 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 148/365 (40%), Gaps = 37/365 (10%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L IW ++ + + + DGFD+G+G+L F R++T R M++S+AP WDGN+ WL+ Sbjct: 7 YLPLIWAGILATAVGLYVILDGFDLGLGILF-FTTRDETARDDMMSSVAPFWDGNETWLV 65 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 GG L AA+P+ Y+ Y+ +IL+L +L R V F++R W WD Sbjct: 66 LGGGGLLAAFPLAYSIIMPALYIPIILMLLALILRGVAFEFR--WAAKPWHGFWDVAFAG 123 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + L G G L+QG+ + + G F +PF LL G V Sbjct: 124 GSTLAALAQGFVLGGLIQGITVKDN-----AFAGGPFDWFSPFALLCGFGLVAGYGLLAC 178 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L M+T G L R A L + C A+ +W + Sbjct: 179 CWLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFSTPNIF----- 233 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 LW +PA L L R F Sbjct: 234 ------------------YLWPLPAATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAG 275 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 I+ +P+++P S+ +W A + +L M +L+P+IL YT + YW GR Sbjct: 276 LAISAYPYLVP------HSIDLWQAAGAPESLKFMLIGVSILLPVILGYTIFVYWTFRGR 329 Query: 366 ITKED 370 + + Sbjct: 330 LRVGE 334 >UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CTD2_CORST Length = 336 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 114/366 (31%), Positives = 176/366 (48%), Gaps = 42/366 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFL-----GRNDTERRIMINSIAPHWDGNQ 61 L +W++++ G+ V +GFD GVGML FL +D R + +I P WDGN+ Sbjct: 3 LNTVWFIIIAFFFTGYFVLEGFDFGVGMLLPFLRGESAADSDARRTAAVRAIGPVWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWLI AG ++FAA+P YA FSGFY+ ++L++ +L R V ++R K++ WR D Sbjct: 63 VWLIVAGASIFAAFPEWYATLFSGFYLPLLLIVTALIIRGVSLEWRVKVDTLAWRKRCDI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 GI +GS++P L+ GVA N++ GV F+ ++ G F LLNP GLL G + + Sbjct: 123 GIALGSYLPALLWGVAMTNIVAGVAFSSPGHVDSVIDG-FLGLLNPRGLLGGAAFLLLFA 181 Query: 182 TQGATYLQMRTVGELHLRTRATAQ-VAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 GA +L ++T + + A A+ A+ TL A+ VW+ Sbjct: 182 FHGALFLGLKTHAPVRTQVHAIARGWLAIATLAVGAIYLVWMQLN--------------- 226 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 W A + + + AF ++ + Sbjct: 227 -------------------FGKSWTWIALAAVALALVAAFAGLWSGRDRTAFFGTAAAII 267 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + L A+FP V+PS T + L ++ A++S TL +MTW AVVL P +L+ W YW Sbjct: 268 AVGLALFGALFPNVLPSVTDVAG-LDIYTASASPYTLKIMTWAAVVLAPAVLIGQGWTYW 326 Query: 361 KMFGRI 366 + RI Sbjct: 327 QFRARI 332 >UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MEL0_ENTS8 Length = 340 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 148/364 (40%), Gaps = 44/364 (12%) Query: 12 WLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGAL 71 + ++ + + DG D+GVG+L F ++ R+ M S+ P WDGN+ WL+ GAL Sbjct: 16 AGALAAGVLIYVLLDGADLGVGLLAPF--QSPQARQQMNISLLPVWDGNETWLVLTAGAL 73 Query: 72 FAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPP 131 A +P+ ++ +S Y+ + ++L ++ R V +YR ++D GS++ Sbjct: 74 LAMFPVAFSILYSALYLPVYIMLLAMIVRGVAIEYRHLRP-----RLFDALFIAGSWLTS 128 Query: 132 LVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMR 191 L G G ++G+ N +TG L+PF + + GA +L R Sbjct: 129 LSQGATMGAWVEGITHN-----GATFTGGPMDWLSPFSVFCAMALSVGYALLGACWLIWR 183 Query: 192 TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVRE 251 GEL+ R A AL+T A VW + + Y + + Sbjct: 184 CEGELNAWARRQAMWLALLTAALLAGLLVWTVQLNETYRLHLQLWR-------------- 229 Query: 252 AGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMF 311 + A+G++ L ILT R + + L +A+F Sbjct: 230 ------------WSGPLVAVGLLAFLGVILTLRQRRDFLPLAMTLLLFITAFGGMLLAVF 277 Query: 312 PFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDI 371 PF++P +L + A + T +M V VPI L+Y +W +W G+I Sbjct: 278 PFILPP------NLLLIQAAAPPATQKLMLIAFGVFVPITLIYNSWGFWVFRGKIHAARE 331 Query: 372 ERNT 375 E Sbjct: 332 EERH 335 >UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3T8_STRRD Length = 313 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 104/363 (28%), Positives = 164/363 (45%), Gaps = 54/363 (14%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L W+ ++ L G+ V +GFD GVG+L L RN+ ER+ ++ +I P WDGN+VWLIT Sbjct: 3 LTTFWFAVIAFLWTGYFVLEGFDFGVGLLAPALSRNEAERKQVLGTIGPVWDGNEVWLIT 62 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A GA+FAA+P YA S FY+ + LVL L R +G ++R K+ + R D GI +G Sbjct: 63 AVGAMFAAFPAWYAGLLSEFYLPVTLVLVGLIVRGIGLEWRGKVHHSSDRAWCDLGILVG 122 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S +P + G F +LL L+ GV S+ + + GA Sbjct: 123 SALPAFLWGAVFADLLHDSAIA--------------------ALVGGVFSLSLCVLHGAV 162 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 ++ ++T G + R R TA V T + + Sbjct: 163 FVTLKTSGPVRARARRTAMV---------------------------TSAVALPAAVVAL 195 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + AG + ++ P LWA + I + WAF ++ ++A + Sbjct: 196 SNIPAAGTAVADWTAAPWLWACALTAMAALAAGIALTWRGRDGWAFAATASSIALGSIAL 255 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 A++P +P LT+ +A S TL ++TW+ ++ +P +L Y AW YW R+ Sbjct: 256 FGALWPAPLP-------GLTVAEAASGPYTLGMLTWIGLIALPFVLGYQAWSYWVFRKRL 308 Query: 367 TKE 369 E Sbjct: 309 VAE 311 >UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C9B8_9PLAN Length = 346 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 83/359 (23%), Positives = 164/359 (45%), Gaps = 32/359 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +W +L+ +++ + V DGFD+GVG+L + R+ +E++ +I SIAP WDGN+VWLI Sbjct: 1 METVWLILLVLMIATYIVLDGFDLGVGVLHLLIARDRSEQKQIIQSIAPVWDGNEVWLIA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 AGG + A+P ++ FSGFY+ + +V+ L FR + + + ++ W + W+ +F+ Sbjct: 61 AGGTMMMAFPGFLSSMFSGFYLPLTMVVWLLIFRAISIELPHYLSDSLWIHFWNLMLFVA 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYT-----GNFFQLLNPFGLLAGVVSVGMII 181 S + +++G A N+ +GVP + G +L+ + +L+GV S ++ Sbjct: 121 SGLLIIILGAAMANIYRGVPLDATGSFFEPLWTNFRIGPPTGILDWYTILSGVTSATFLL 180 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA +L +T G + R A ++ + + Y Sbjct: 181 HHGALWLVAKTDGRVQQHARQAATWLWTGSIGLTLVIFIASWYVQPLAR----------- 229 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 +F+ TP +P V+ L + +K AF+ S L + Sbjct: 230 ---------------TSFSETPWKIILPLAAVLSLLASGYLRWKNKNMPAFLSSGLFIYL 274 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 +I + +A++P ++P LT+++ + L + + + ++ +Y + Sbjct: 275 VIFSGAMAIYPNILPG-LNPEHHLTIYNTSPGPEKLTTTLYWWIPGILLVGVYFTILFR 332 >UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XPN4_9CORY Length = 334 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 40/366 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG-----RNDTERRIMINSIAPHWDGNQ 61 L IW+L + VL GF V +GFD GVGML F+G ND R +++I P WDGN+ Sbjct: 3 LNTIWFLGIAVLFAGFFVLEGFDFGVGMLLPFVGGDTPEDNDRRRTAQVSTIGPLWDGNE 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 VWL+TA A+FAA+P YA SGF+ +L+L L R V ++R K + +WR D Sbjct: 63 VWLVTAAAAIFAAFPEWYATLLSGFFFLFVLILVGLIVRGVSLEWRVKGKTAQWRRRCDI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 G GS++P + G+ F NL+ GVP N D+ +T F L NP GL G+ V + Sbjct: 123 GTTFGSYLPAFLWGLIFTNLVAGVPLN-DKGRISSFTDGFVGLFNPLGLAGGLAFVLLFA 181 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 GA ++ ++ L R R A +L V Sbjct: 182 LHGAIFVALKAHEPLRGRARTLALRWLAAPTAIVSLLYV--------------------- 220 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 WL N W A+ + I ++ +AF +++ +A Sbjct: 221 ------------VWLQNVAGAQWTWIAVAVAALGIAAAIGATFANRDGFAFAATTIAIAA 268 Query: 302 IILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 + + ++FP V+ S+ + ++ A S+ TL +M+W ++++P +++ AW +W Sbjct: 269 VCVVLFGSLFPDVIRST-SAHPGWDIYSAASNPYTLRIMSWAGIIILPAVIVAQAWSFWS 327 Query: 362 MFGRIT 367 R+ Sbjct: 328 FRQRVK 333 >UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7C6_9DELT Length = 337 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 147/373 (39%), Gaps = 36/373 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L W+ ++ +LL + TDG+D+G G+L + R IM SI W N Sbjct: 1 MDGQISLADAWFGILALLLWLYVFTDGYDLGAGILCLHEA-DPVHREIMAESIDGVWHAN 59 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Q WL+ GG LF A+P+VY + Y+ +L ++ R +G +YR K + + W Sbjct: 60 QTWLVLLGGVLFGAFPLVYGTVLAALYLPAGFLLFAIMARGIGLEYRMKADN---KLPWS 116 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 GS L G G +LQG+ F+ L++ G F +PF +L + + Sbjct: 117 RLFGWGSVAVTLAHGFLLGGVLQGMDFD-----GLHHAGGAFDWFSPFTILVAATFLCLY 171 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 GA +L +T G L ++R + T+ L ++ + Sbjct: 172 AFLGAAWLVWKTEGPLQHQSRIWSVRYGAATVGMLVLLAGYIALDGRLGFLVGRPGQGGL 231 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 + V +I + V+ +L L Sbjct: 232 GA---------------------FFILSLVVAVFCAAFSIRSIGKGGEVLPLVWCALMLV 270 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + + G +++P ++P LT+ A + L L +M W ++P+I LY A+ + Sbjct: 271 AVFVAFGGSLYPLIVPPR------LTIEQAAAPPLMLKIMLWTVGSMLPVIFLYNAYHFR 324 Query: 361 KMFGRITKEDIER 373 + G++ ED Sbjct: 325 LVRGKVRLEDETH 337 >UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 Tax=Bacteria RepID=Q1LCN4_RALME Length = 345 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 161/373 (43%), Gaps = 56/373 (15%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 + ++ L+G+ ++ + + DG+D+GVG+L R +D ++ MI SI P WD N+ WL+ Sbjct: 15 WMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRA--DDVDKDTMIASIGPFWDANETWLV 72 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G L A+PM + + Y+ + L+LA L R V FD+R K + + W++ + Sbjct: 73 LGVGLLLTAFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPH-KPWWNFAFYA 131 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + G+ G + G +++ L F + G+ V GA Sbjct: 132 GSLLASFSQGLMLGLYITGFRYDLPNLL--------------FAVAVGLCLVAGYCLLGA 177 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 ++L M+T G L LR A+ + +T + A + P+ Sbjct: 178 SWLIMKTTGNLQLRAIYWARRSLWLTAIGVAAISIVT--------------------PMV 217 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKA----------AWAFVFS 295 E + E L N +L IP L +VL ++ R + FV + Sbjct: 218 SERIFEKWFSLPNII---LLAPIPLLTMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGT 274 Query: 296 SLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYT 355 ++ ++FP+++ +W A S+ +L V+ AV+++P IL YT Sbjct: 275 AVIFLLAFNGLAYSLFPYLVVDRID------IWQAASAPESLMVILIGAVIVLPTILGYT 328 Query: 356 AWCYWKMFGRITK 368 A+ Y +G+ T Sbjct: 329 AYAYRVFWGKATD 341 >UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHD0_9ACTN Length = 354 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 115/381 (30%), Positives = 185/381 (48%), Gaps = 41/381 (10%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 VL IW++L+ VL+ G+ V DGFD+G G+L+ F+ + D E+ ++ S+ P WDGN+VWL Sbjct: 2 TVLGIIWFILIFVLIAGYFVLDGFDLGAGVLSPFVAKTDEEKALLRRSVGPVWDGNEVWL 61 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 +TAGGALFAA+ YA FSGFY+A+ILVL L R + +Y + + W+ W+ F Sbjct: 62 LTAGGALFAAFAPAYATTFSGFYLAIILVLMGLIVRAISLEYSANETKPGWKKAWNALFF 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 +GS +P L+ GVA GN+ G+P N + L+ PF LL G++ + M I QG Sbjct: 122 VGSLLPALLFGVAIGNVYAGIPMNANGDYVGI---PLLGLVTPFTLLCGLLGLSMFILQG 178 Query: 185 ATYLQMRTV--GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 A++L ++ + +R R + A++ +V FAL V+ + I +V Sbjct: 179 ASWLALKAPEGSAMAVRARMARRTFAILAIVFFALVTVYALVIIKPEMVGGLSILR---- 234 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 + +L + + F+ SS+ + Sbjct: 235 ----------------------IAFAVLFVAMLAATFMKATDEKASLVVFLASSVACFAL 272 Query: 303 ILTAGIAMFPFVMP----------SSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIIL 352 + G ++FP ++ ++ A++T+ A S LTL M + V +P +L Sbjct: 273 VALLGASLFPNLVVAGAGDPFNLFATAASGANITIETAASEDLTLAWMLGITCVGLPFVL 332 Query: 353 LYTAWCYWKMFGRITKEDIER 373 LY Y G++TKED Sbjct: 333 LYHFLVYRTFAGKLTKEDASE 353 >UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=D0L0A7_HALNC Length = 348 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 43/370 (11%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 Y+ L FIWW+L+G+ ++ + + DG D+G G+ + F ++ ER ++ S+A WD N+ W Sbjct: 11 YQWLTFIWWVLIGLFVVLYIILDGADLGSGIYSLFNSDSE-ERGAIMASMAGTWDANETW 69 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ AGGA+F +P+ Y + F + +++VL + R V ++ R R +WDWG Sbjct: 70 LVVAGGAIFGTFPLAYGSLFHYLMIPLMVVLWGIIIRAVSLEFHHY--SKRSRALWDWGF 127 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 IGS V GV G LQG + + G L PF +L G +V Sbjct: 128 GIGSLVTTFGAGVCLGAFLQGFQMTTGQVP--TFGGGALDFLTPFSILTGFTAVIAASLA 185 Query: 184 GATYLQMRTV--GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 G YL+ R E++ + + + LV + VW Sbjct: 186 GGAYLRARFDRSTEIYAKALKWTDLMFYLALVAIMITVVWTFIQF--------------- 230 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTI---LTARMDKAAWAFVFSSLT 298 +W + P WA G ++ T +R + A ++ + Sbjct: 231 ------------SWARDKWIGPYWWAYVIAGAIVLFATWSMRKASREQRDITAMIWLASI 278 Query: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 + T ++P+ +P + +T++DA + +L+ ++ + VP++L Y + Sbjct: 279 VFINFATMMATLYPWFVPGT------MTIYDAANPSNSLSAFSYAMLGFVPVMLSYNFYQ 332 Query: 359 YWKMFGRITK 368 W R+ K Sbjct: 333 AWVFRARLHK 342 >UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (CydB) n=2 Tax=Thermococcus RepID=C5A672_THEGJ Length = 331 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 106/363 (29%), Positives = 171/363 (47%), Gaps = 38/363 (10%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 W+ LL + DGFD+G+G L + +N +R I+IN+I P WDGN+VW IT Sbjct: 4 ATAWFYFSAFLLGMYLAFDGFDLGIGALLALI-KNQKDRDILINTIGPVWDGNEVWFITW 62 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 G LFA WP +YA FS FY+A+ L+ L FR VGF++R+K + +WD + S Sbjct: 63 GAGLFAMWPALYATLFSTFYLAIWLLAFLLIFRAVGFEFRNKN-----KELWDKLFALVS 117 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 + PLV+GV GNL+ G+P + + + G+ L P+ L+ G+ + I GA + Sbjct: 118 ALIPLVVGVVVGNLVMGIPIDANG-----FHGSLLTLFRPYPLIVGLFILFATIWHGANW 172 Query: 188 LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKE 247 +T G+L R A L+T+V L + + + Sbjct: 173 GVYKTTGKLQEELRGYAFKFWLLTVVLLLLTVIGMKIWAPLRFERLMT------------ 220 Query: 248 VVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG 307 P+ + + +V LL + + AF S L ++ Sbjct: 221 ---------------PLGLGLTLVILVAGLLDGHLIKKGEERLAFYISWLAFPLVVFLVY 265 Query: 308 IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 +M+P+ + S+T N L++ D +S LTL + V+V+L II+ YT + Y G++T Sbjct: 266 YSMYPYWVISTTDPNFKLSIHDLAASPLTLKAVLGVSVILAVIIMAYTLYVYKMFGGKVT 325 Query: 368 KED 370 + + Sbjct: 326 EAE 328 >UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I116_CAMHC Length = 368 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 166/381 (43%), Gaps = 24/381 (6%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 YE L+ WW ++ LL G V F G ML F +++ + +++NSI W+ Sbjct: 1 MYENLQIYWWFIIS-LLAGIFVFMSFVQGGQMLL-FSFKDEKNKDMIVNSIGKKWELTFT 58 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 L+ GGA FAA+P+ Y+ +F G Y + +L + V ++YR K + ++ Sbjct: 59 TLVMFGGACFAAFPLFYSTSFGGAYWVWMAILFCFIIQAVSYEYRKKENNFLGQKCYEIF 118 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQ---LLNPFGLLAGVVSVGM 179 + I F+ +IGVA G F++D + + L NPF L G V Sbjct: 119 MLINGFLGIFLIGVALSTFFSGSEFSLDTRNFVAWKNPLRGLEALFNPFNFLLGFTLVFA 178 Query: 180 IITQGATYLQMRT-VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHY 238 G+ YL + + R + A V ++ F VW+ Sbjct: 179 ARVGGSMYLINHINEDYMRKKIRNFLKKDAAVFVIFFIAFLVWI-------------SLK 225 Query: 239 AASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKA--AWAFVFSS 296 N VV + +++NF N ++ + V+ L I K+ F Sbjct: 226 DGFCVENGVVVTKKFHYILNFFNHYFIFFGLIISVLTALFGIYKGAFTKSIQGIWFWGIG 285 Query: 297 LTLACIILTAGIAMFPFV-MPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYT 355 + A L + M V PSS +N+SL++++A+SS TL M +++ V +P +L Y Sbjct: 286 VIFAVTFLFFSLGMSGNVFYPSSADLNSSLSIYNASSSFYTLKTMAYIS-VFIPFVLAYI 344 Query: 356 AWCYWKMFG-RITKEDIERNT 375 A+ + M +++K+++E++ Sbjct: 345 AYVWKNMDKTKMSKKELEKSN 365 >UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ASF7_BURM1 Length = 326 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 156/366 (42%), Gaps = 44/366 (12%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 ++ + W+ + L+ + + DGFD+GVGMLT F G R MI SIAP WDGN WL+ Sbjct: 1 MMTWFWFAELAFALVAYLMLDGFDLGVGMLTAFAGDA---RDEMIASIAPVWDGNGTWLV 57 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 AG LF A+P VY+ Y + L+LA L R V ++R K R R +WD +F+ Sbjct: 58 IAGTILFGAFPSVYSIVLPALYAPLCLMLAGLIMRGVAIEFRHKAA--RSRRIWDVLLFV 115 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + ++ GV G G+P + +L Y GN F+ +PF GV G+ Sbjct: 116 GSLLASVMQGVCVGTYAHGLPVD-----QLRYAGNGFEWCSPFSFWCGVSLALGYALLGS 170 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L ++ R A +T + + Sbjct: 171 GWLVLKGQRASQRIGRDAIARLAPITALFVL--------------------------SIL 204 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + + P+L+A+P L AR D A A++F++ ++L Sbjct: 205 ASTLLTETTVETRWLLHPLLFALPVAACATFLCAPAAARRD-GASAYLFAAGGCIAMVLM 263 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVL-VPIILLYTAWCYWKMFG 364 + PF++P LT+ A + + + M W A + +P I+ YT Y G Sbjct: 264 LAASYLPFIVP------FDLTLDAAAAPRASQTFMFWGAGLFVMPFIVFYTCVAYSVFRG 317 Query: 365 RITKED 370 R++ + Sbjct: 318 RVSNDH 323 >UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Burkholderia RepID=B2JUZ0_BURP8 Length = 329 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 83/364 (22%), Positives = 151/364 (41%), Gaps = 47/364 (12%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 + +L ++W+ L+G++L + VTDGFD+GVG+L+ R +R +M+ SI WD N+ Sbjct: 5 THSLLAYVWFGLLGLMLAFYVVTDGFDLGVGILSLLRAR-RADRDVMVESIGHVWDANET 63 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+ GG LF A+P+ YA Y ++ ++A L R ++R +E +WD Sbjct: 64 WLVVLGGGLFGAFPLAYAQLMQDLYSPVMALIAGLIMRGAAIEFRHSVEHG---PLWDKV 120 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 IGS + L GV G ++ G+ ++ N F ++A V Sbjct: 121 FGIGSLIAALAQGVVLGKVITGLV--------------PGEMNNVFVIVAATGVVAGYAL 166 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 GATYL +TVG + +R A ++A++T+ L + D + + Sbjct: 167 LGATYLVKKTVGMIEQWSRRLALLSAMLTVAAALLLTTATWFFSDVGSERWSRPGV---- 222 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 +L A+ +++ + + F + Sbjct: 223 -------------------MHLLIALGIAAAFAFAFIMVSLYLGSSRGPFRGAVTLFVVS 263 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 +++FP +P L + A S TL M ++ P+++ Y + Y+ Sbjct: 264 FAGLAVSLFPDFVPGK------LGIVQAASDSHTLAFMLAGIGLIFPVMIGYNLYQYYIF 317 Query: 363 FGRI 366 G++ Sbjct: 318 RGKV 321 >UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0L6_SLAHD Length = 346 Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 115/361 (31%), Positives = 181/361 (50%), Gaps = 23/361 (6%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITA 67 IW++LV VL+ G+ + DGFD+G G+L+ F+ +ND E+ ++ +I P WDGN+VWL+T Sbjct: 5 AIIWYVLVFVLIAGYFILDGFDLGAGVLSPFIAKNDEEKLTLMKAIGPVWDGNEVWLLTG 64 Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGS 127 GGALFAA+ YA FSGFY+A+ILVL L R V ++ + + WR +W FIGS Sbjct: 65 GGALFAAFAPAYATTFSGFYLAIILVLMGLIIRAVSVEFAA--HDPAWRKLWFVLFFIGS 122 Query: 128 FVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATY 187 +P L+ GVA GN+ G+P + L+ PF LL G++ + M I QGA + Sbjct: 123 LLPALLYGVAVGNIYAGIPMDAAGNYIGV---PLIGLVTPFTLLCGLLGLTMCILQGACW 179 Query: 188 LQMRT--VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 L ++ GEL R R + A+V +V FAL ++ ++ I + + Sbjct: 180 LSVKAPLEGELLARARGLRRPVAIVAIVLFALVTLYALFIIKPELAAGLGVLRILFALVV 239 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + V + + + A L+ + + SS+ ++ Sbjct: 240 VAALVFVLLKAVQPEASDLTIFLVASVACFALVGL------------LASSMFPTFVVSG 287 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +G + PF+ + A++T DA S LTL M + V +P++LLY Y GR Sbjct: 288 SGDPLTPFM---TATEGAAITAADA-SGDLTLKWMFGITCVALPLVLLYHFLVYRTFAGR 343 Query: 366 I 366 + Sbjct: 344 L 344 >UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C321E0 Length = 449 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 160/401 (39%), Gaps = 33/401 (8%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M D +L+ +W + + VL + + V +GFD GVGML R + R+ +RR+ +++I P W N Sbjct: 1 MADLTLLQSVWLVAIAVLWVLYLVLEGFDFGVGMLLRRVRRDQLDRRVALHAIGPTWAAN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VW+I A +F A+P YAA SG Y+ + +VL S+ R G + K E+ RWR W+ Sbjct: 61 EVWVIVAVVGMFGAFPGWYAAWASGLYLPLAVVLLSIVARNAGIELLGKREDERWRLRWE 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 I + S V P G+ + + G+ +E + G+ ++ P+ +L G+ V + Sbjct: 121 RVIELSSTVAPFCWGLMWAATVHGLSLRGEEVV-----GSPLDVVTPYSVLGGLALVALC 175 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 QGA +L +RT G + R +AA V V W Sbjct: 176 RAQGAAFLMLRTDGGVRSRAAGELALAAPVAAVVGIGFLAWTGAASTPGAAGWIALVSCG 235 Query: 241 SNPLNKEVVREA---------------------------GAWLVNFNNTPILWAIPALGV 273 ++ G Sbjct: 236 VALTLVALLARRGAGAGVDAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA 295 Query: 274 VLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSS 333 A A F +S + ++ + +FP + ++ A S Sbjct: 296 GGAGAGAGGAGGRSGAAPFAAASAAIGLLVASWFCVLFPDAIAAAGGGAGLALTDVAAGS 355 Query: 334 QLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERN 374 TL +MT +A ++VP++L AW YW RIT+ D+ Sbjct: 356 -YTLTLMTVLAGLMVPLLLAAQAWTYWAFRHRITRADVGER 395 >UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=B4RY64_ALTMD Length = 335 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 141/363 (38%), Gaps = 40/363 (11%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 E+L I+ L+G+ ++ +A+ DG+D+GVG+L R + R MI SI P+WD N+ Sbjct: 6 SAEMLGNIYVGLLGLSVMLYAILDGYDLGVGVLIP--PRTEAFRDDMIASIGPYWDANET 63 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+ A G L A+P ++ Y+ +L L R V FD+R+K+ + + R WD Sbjct: 64 WLVLAIGLLLIAFPEAHSEFLQTLYLPATFMLLGLILRGVAFDFRAKVVQVKKRK-WDLV 122 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 GS + L G G + G+ ++ F LLA Sbjct: 123 FKYGSLLTTLAQGYMLGIYVTGLRTDI--------------WAQGFALLAAFGVTAAYAF 168 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 G+ +L ++T GEL + A+ V V + + D Sbjct: 169 IGSCWLILKTEGELQQKAYYWARRGLGVLAVGIIAVSIANLTLHDDVRALWLSAP----- 223 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 W P+ + L + A F + L Sbjct: 224 ------------WGYVLFAIPLASFALLALCGVLLKKLPDANGKGEWLPFFIALLVFLLC 271 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 I+ +PF++P +T+ +A S +L + V++VPIIL YTA Y Sbjct: 272 FSAFAISYYPFIIP------GQMTVSEALSDANSLRFLLVGVVIVVPIILAYTAMVYKIF 325 Query: 363 FGR 365 G+ Sbjct: 326 SGK 328 >UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 Tax=delta/epsilon subdivisions RepID=A7ZG70_CAMC1 Length = 374 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 166/385 (43%), Gaps = 21/385 (5%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + E L+ WW +V LL G V F G L LG+++ ++ ++INSI W+ Sbjct: 4 LSLENLQIYWWFIVS-LLGGLLVFMMFVQGGQSLIFSLGKDELKKDMLINSIGRKWELTF 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 L+ GGA FAA+P+ YA +F G Y + +L + V ++YR K + ++ Sbjct: 63 TTLVMFGGACFAAFPLFYATSFGGAYWVWLAILFCFIIQAVSYEYRKKPDNFLGARTYEI 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQ---LLNPFGLLAGVVSVG 178 +FI + ++IG+A G F ++E+ + + F L NP+ L G+ Sbjct: 123 FLFINGSLGVILIGMAVSTFFSGSDFVLNEHNFVEWKTPFRGLEALSNPYLYLLGIAMFF 182 Query: 179 MIITQGATYLQMRT-VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + G YL GE R + ++ L F WV+ Sbjct: 183 LSRIGGCLYLMNNIADGEFIQNARKQLIINTVLFLPFFLGFLAWVL------------TK 230 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + +N V A + +N PI + +GV+L L+ I K+ + Sbjct: 231 DGFAYNVNGVVSLVAYKYAINLIEMPIAGILLLVGVLLVLVGIFQGAFTKSIRGIFAYGV 290 Query: 298 TLACIILTAGI---AMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLY 354 + + + PS + +++SLT+ +A+SS TL VM++V++ LVP++L Y Sbjct: 291 GVTLAVTALFLITGLNGTAFYPSFSDLSSSLTIKNASSSHYTLGVMSYVSL-LVPVVLAY 349 Query: 355 TAWCYWKMFGRITKEDIERNTHSLY 379 + + + +D +N H Y Sbjct: 350 IFIVWRAIDSKKITQDEIKNDHHAY 374 >UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJ24_DESMR Length = 336 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 151/372 (40%), Gaps = 36/372 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L +W+ ++ +LL + TDGFD+GVG+L + +N+ R +MI ++ W N Sbjct: 1 MEAPVTLADVWYWILALLLWLYVFTDGFDLGVGILC-LVEQNEPRRSVMIETVEGVWHAN 59 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Q WL+ GG LF A+P+VY + Y+ +L +L R +G +YR + ++ W Sbjct: 60 QTWLVMLGGVLFGAFPLVYGTVLAALYLPAGFLLFALMTRGMGIEYRPETDDP---RFWS 116 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 GS + G+ G +LQG+PF+ L Y G L PF +L V + + Sbjct: 117 QVFGWGSVAVTVAHGLLLGAILQGMPFD-----GLRYLGGPLDWLAPFPILVAVTLLCLY 171 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 A +L ++T GEL R + C L ++ + Sbjct: 172 PMFAAAWLVLKTEGELQDAARLWGIRFGSAAVACLVLLVGYIALDGSLGHLVGRPGQGGL 231 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 +P+ + + V+ L ++ + LA Sbjct: 232 ---------------------SPLFVLLLVVAVLNAALYFRALGKGWEHRPLMYCAAMLA 270 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + L G+ +FP ++P + ++ D L VM +V L+P++L Y A+ Y Sbjct: 271 FVFLAFGLNLFPLIVPPAVTAASAAAPDD------MLRVMLYVIGGLMPVVLFYNAYQYR 324 Query: 361 KMFGRITKEDIE 372 G+ + Sbjct: 325 VFRGKAVPGEEA 336 >UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Rhodopseudomonas palustris RepID=B3QK51_RHOPT Length = 341 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 145/368 (39%), Gaps = 36/368 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M+ + + +++ + V DG D+GVG+L F R+ ++R M+ ++ P WDGN Sbjct: 3 MMANFDFAAFFAVSAAIVVGLYVVLDGVDLGVGILFPFAPRS-SDRDAMMTTLEPFWDGN 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 + WL+ G L AA+P+ +A FYV + L+L L R + F++RS+ +W Sbjct: 62 ETWLVLGGMVLLAAFPLAFAILLPAFYVPLCLMLFGLVIRGIAFEFRSQRGSFEI--VWS 119 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 GSF+ GV G + + + G F L F + G+ V Sbjct: 120 MTFAAGSFIAAFCEGVVLGAFVGQSITVSNGA----FAGGPFDWLGLFSIATGLGVVAAY 175 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 GA +L +T G R L L VW + + + Sbjct: 176 GLLGACWLVWKTGGSTQNFGRELMLPTLLCAGGAILLVSVWTPFVKPQIAERWFV----- 230 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 + + L +P + V+ + +LT ++ S L Sbjct: 231 ------------------WPDMLWLAPLPIIAVLAGIGILLTRWSEREWSPLALSLLLFI 272 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 + G +++P +P +T+W A+S T ++ V++VPIIL Y + YW Sbjct: 273 TSLAGLGASVWPEAIPGV------MTIWQASSMHRTQVIVAAAIVIIVPIILAYIGYGYW 326 Query: 361 KMFGRITK 368 G+ Sbjct: 327 LFRGKTKP 334 >UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2 n=16 Tax=Bacteria RepID=Q03D44_LACC3 Length = 829 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 148/361 (40%), Gaps = 35/361 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L+ I+ ++ L+ F V DG D G GM T F+G + ++R+ ++ P W GN Sbjct: 491 MPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGN 550 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 + W +TA +FAA+P Y+A SG+Y + L+L L FR V FDYR++ + WD Sbjct: 551 ETWAVTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWD 610 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 W +FIGS +PP ++G+ F + + GVP + + +L PF +L G+++V Sbjct: 611 WALFIGSLMPPFLLGIIFSSTVSGVPIR-----NGFVYASMGDILTPFSILGGILAVLFS 665 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 + G + + + + + L + + + + + + Sbjct: 666 LNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVIVTLLL 725 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 + V + AF S T+A Sbjct: 726 ILLVAFLGVETW-----------------------------AISQQRRRVAFWLSVGTMA 756 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 I T + +FP ++ T S+T ATS ++L W+ + +++ A Y Sbjct: 757 SFIYTIFLGVFPTLIVGRT-AGTSITALTATSGPVSLLWTAWLFGFTIILMVGLQATAYH 815 Query: 361 K 361 Sbjct: 816 L 816 >UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=16 Tax=Francisella RepID=A0Q8B4_FRATN Length = 320 Score = 194 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 83/363 (22%), Positives = 150/363 (41%), Gaps = 48/363 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW ++ L+ + + DGF +G+G+L L +D ++ I + + P WDGNQ WL+ Sbjct: 3 LGLIWLAIIAFALLLYVILDGFALGMGILFPLL--DDHQKDIATSILLPTWDGNQTWLVF 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A + +P+ +A F Y++ IL++ + R + F++R K + WD FI Sbjct: 61 ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLK-SSQKGIKNWDKLFFIS 119 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SFV + G G L+ G P N F + G+ + GAT Sbjct: 120 SFVATFLQGYIVGELIVGFPHNSFYNFG-------------FSAVTGITLIFGYSLLGAT 166 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 L ++T GEL + + A++ ++ V + G + Sbjct: 167 RLILKTEGELFTKAKQLAKICCIILAVLMLVIGGMTPLYVKL------------------ 208 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 L N IL + L ++ L+ I A + S ++ Sbjct: 209 --------PLDNLYKMAILGELFLLTIISFLVLIKVIEAKNHALPYWLSVAIFILTYISM 260 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 +FP+++P +T A +S TL A++++P++LLYT++ Y+ G+ Sbjct: 261 LTLIFPYIIP------YQITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFRGKT 314 Query: 367 TKE 369 ++ Sbjct: 315 KEK 317 >UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Tax=Prevotella RepID=C9Q1E8_9BACT Length = 408 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 161/392 (41%), Gaps = 30/392 (7%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++ YE L+ WW LV +L F G L LG+ + ERR+++NS W+ Sbjct: 28 LMSYEFLQHYWWFLVSLLGALLVFLM-FVQGANTLIFTLGKTENERRLVVNSTGRKWEFT 86 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 L+ GG FA++P+ Y+ +F G Y +++L S + V +++++K+ + Sbjct: 87 FTTLVVFGGGFFASFPLFYSTSFGGAYWLWMIILFSFVIQAVSYEFQNKLGNILGARTFQ 146 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLY-----------YTGNFFQLLNPFG 169 + I + P+++G A G F VD+ + LL+ + Sbjct: 147 TFLIINGVLGPVLLGGAVATFFNGSNFIVDKGNITTMAQPVISRWANASHGLDALLDLWN 206 Query: 170 LLAGVVSVGMIITQGATYLQMR-TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDG 228 ++ GV + G Y+ + R R ++ +V L F Sbjct: 207 VVLGVAVFFLARVLGLLYIINNVAHAPVVTRARKQLRLCTVVFLAFFL-----------S 255 Query: 229 YVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLL----TILTAR 284 ++V + A +P + + +L N L + +GV L T+ A Sbjct: 256 FLVHLLLKDGYAYDPQTGIISMQPLKYLHNLTTMWYLAIVLLVGVASLLYGIVRTLRDAN 315 Query: 285 MDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVA 344 ++ W + + ++L PS+T + +SLT+ +++ S+ TL M+ V+ Sbjct: 316 FNRGIWFGGVGVVLVVLVLLLCAGWNNTAYYPSNTDLQSSLTIANSSGSKFTLTAMSVVS 375 Query: 345 VVLVPIILLYTAWCYWKM-FGRITKEDIERNT 375 + L+P +L Y + + +T+E+I Sbjct: 376 L-LIPFVLAYIFVAWRAIDRKPLTEEEIMNGE 406 >UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 Tax=Bacteria RepID=B2RJL6_PORG3 Length = 387 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 176/397 (44%), Gaps = 34/397 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 ++Y +L+ WW LV +L F G LG+++ +++M+NS W+ Sbjct: 1 MEYALLQHYWWFLVSLLGALLVFLL-FVQGGQSFLFSLGKDELTQKMMVNSTGRKWEFTF 59 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 L+T GGALFA++P+ Y+ +F G Y +L+L + V ++Y+SK R + Sbjct: 60 TTLVTFGGALFASFPLFYSTSFGGAYWVWMLILFCFIIQAVSYEYQSKHGNVWGRKTYQI 119 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN-----------------FFQL 164 +FI + PL++G A G F V++ +G + Sbjct: 120 LLFINGVLAPLLLGTAVSTFFTGSSFVVNKMAMFDLSGGNQIVSAWQPFNGWQLRGLEAV 179 Query: 165 LNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMY 224 LN + ++ G+ + Y E A + F LA + + Sbjct: 180 LNLWNVVLGLAVFFLARVSALLYFINNIDDESLYAAAKRRLWANTAAFLIFFLAYIAFLL 239 Query: 225 GIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPL----LTI 280 +G+ V NP++KEV E +L NF + P + A+ LGV+L L LT+ Sbjct: 240 TTEGFAV----------NPVSKEVYMEPYKYLYNFLDMPAVLAVFLLGVILVLGGIGLTL 289 Query: 281 LTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVM 340 L + W ++ +L PS+ + +SLT+ +A+SS TL VM Sbjct: 290 LRKGFKRGIWLHGTGTVLTVLALLLVAGWNDTSWYPSTYDLQSSLTIENASSSHFTLKVM 349 Query: 341 TWVAVVLVPIILLYTAWCYWKMF-GRITKEDIERNTH 376 ++V+ +L+P +L Y + + + +ITK+++E++ H Sbjct: 350 SYVS-ILIPFVLAYIFYAWRALDIRKITKKEMEQDDH 385 >UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 Tax=Bacteria RepID=A6LFA4_PARD8 Length = 383 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 158/381 (41%), Gaps = 8/381 (2%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 Y +L+ WW LV +L F G L +G+ + ++++++NS W+ Sbjct: 4 TYILLQHYWWFLVSLLGALLVFLL-FVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFT 62 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 L+T GGA FA++P+ Y+ +F G Y +L+L + V ++Y++K + + Sbjct: 63 TLVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVF 122 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQ-LLNPFGLLAGVVSVGMII 181 + I P+++G A G F V++ NP+ L + + Sbjct: 123 LMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMPVISTWANPWHGLEAALVFWNLC 182 Query: 182 TQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAAS 241 A + R + L+ + + + ++++ + A Sbjct: 183 LGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGFAV 242 Query: 242 NPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLL----TILTARMDKAAWAFVFSSL 297 NP EV + + +N PI+ A+ +GVV L TI + K W ++ Sbjct: 243 NPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAGTV 302 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 +L PS + +SLT+ ++ SS TL VM++V+ +LVP +L Y + Sbjct: 303 LTVLALLLCAGWNNTAYYPSLADLQSSLTIQNSCSSPFTLKVMSYVS-ILVPFVLAYIFY 361 Query: 358 CYWKMF-GRITKEDIERNTHS 377 + + +I ++++ H+ Sbjct: 362 AWRALDLHKINSKEMQEGGHT 382 >UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Gammaproteobacteria RepID=C6NVA4_9GAMM Length = 362 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 151/379 (39%), Gaps = 48/379 (12%) Query: 4 YEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVW 63 + L WW+L+G+ + + V DG D+G G+ + L N+ +R ++ S+A WD N+ W Sbjct: 11 HSSLGTFWWILLGLFFVIYIVLDGADLGAGVFSLML-ENENDRAAVMASMAGTWDANETW 69 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 L+ AGG +F A+P+VY A F+ + ++ L + R V F++ + + W Sbjct: 70 LVVAGGVIFGAFPLVYGATFNYLMIPLMFALWGIISRAVAFEF--HVHAKGSKAFWGKMF 127 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPF------------NVDEYLRLYYTGNFFQLLNPFGLL 171 +GS V GVA G L G P + +++GN L+PF + Sbjct: 128 GLGSLVAAFFAGVALGATLLGFPMSKGNAQGIQVANDPFANTVPHFSGNALSFLSPFSIW 187 Query: 172 AGVVSVGMIITQGATYLQMRT--VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGY 229 G+ +V G YL R ++ + A A + + LV + VW + Sbjct: 188 TGIAAVIAGGLAGTLYLCARFKQDDPIYQKAYAWATTFSYLALVAVVITLVWSYAIMP-- 245 Query: 230 VVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAA 289 +A W + ++ + L ++ A + Sbjct: 246 ---------------------DAAKWTGSGWFGWLILLLAILFSAFRMMMAHAA--HRDF 282 Query: 290 WAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVP 349 A ++ + + FP+++P + T+ + L ++T VP Sbjct: 283 PALLWCGAIVVLMWGGMWATNFPYIVPQT------WTIAAGANPANDLAILTLFMTGFVP 336 Query: 350 IILLYTAWCYWKMFGRITK 368 ++++Y A+ W R+T Sbjct: 337 VMIMYNAYQIWVFRHRLTH 355 >UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q1A5_NITSB Length = 372 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 24/385 (6%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61 + L+ WW +V +L + F G G L N+ ++ +++N++ W+ Sbjct: 5 MSTYTLQEYWWFIVSLLGGL-FLFLTFVQG-GQTKLGLAGNEEQKDLIVNALGRKWELTF 62 Query: 62 VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121 L+ GGALFAA+P+ YA +F G Y + +L S + V ++YR K + +++ Sbjct: 63 TTLVLFGGALFAAFPLFYAVSFGGAYGLWMAILFSFIIQAVAYEYRKKPNNFFGQKVYEL 122 Query: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLL---NPFGLLAGVVSVG 178 +F+ V +IGVA +L G F +D+ + + G+ L NPF +L G++ V Sbjct: 123 FLFLNGTVGIFLIGVALASLFTGAAFKLDDMKHMTWLGSMRGLEALGNPFNILFGLMMVF 182 Query: 179 MIITQGATYLQMRTVG-ELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + Y EL + + + + LV F W++ Sbjct: 183 LARLNANLYFMFILDDPELVEKAKKAIKTDFAIFLVLFLAVAGWIL-------------S 229 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + + A +L NF P + +GV L L ++ A AF FSS Sbjct: 230 MSGVGYEQNKFFVVAHKYLNNFLEMPFVLGAFVVGVGLLLGAVVMALKG-VKKAFWFSST 288 Query: 298 TLACIILTAGIA---MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLY 354 + + L+ + PS + +SLT+ +++ S++TL M++V++ +VP ++ Y Sbjct: 289 AITLVGLSLLLVLGYNHTAYYPSIADIGSSLTIENSSGSRVTLITMSYVSL-MVPFVVGY 347 Query: 355 TAWCYWKMFGRITKEDIERNTHSLY 379 A+ + M + ED N Y Sbjct: 348 IAYVWRLMDSKPLSEDEVENDVMSY 372 >UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z1X7_9NEIS Length = 336 Score = 187 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 140/365 (38%), Gaps = 36/365 (9%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M L ++ L+ + L+ + + DG+D+GVG+L + ER MI SI P WD N Sbjct: 1 MNAELWLPVVFAGLMAISLLAYVILDGYDLGVGILLPLGAK--AERDTMIASIGPFWDAN 58 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 + WL+ G L A+P+ + Y+ + L+L L R V FD+R K + + W+ Sbjct: 59 ETWLVLGVGLLLVAFPLAHGIILGELYLPVALMLLGLILRGVAFDFRVKARDPH-QPWWN 117 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 GS + L GV G L G + F LLAGV Sbjct: 118 AAFAAGSLLAALSQGVMLGRYLTGFAPGAAAWG--------------FALLAGVGLAAAY 163 Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 GA +L M+T G L R A+ A T + + K Sbjct: 164 ALLGAGWLIMKTRGALQARAIGWARRALYGTGLAVLAVSIATPLASSHIAAKWF------ 217 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 V+ + L + L+ + AL + F + + Sbjct: 218 -------VLPDFLLLLPLPLGSLALFVLLALSLPRLARRQAAGNDTLCWLPFAATVGIVL 270 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 ++FP ++ LT+W A SS L+V+ W A V++P I+ YT + Y Sbjct: 271 LSFWGLAYSVFPDIVIGR------LTIWQAASSPEALSVILWGAAVVLPTIVGYTVYAYR 324 Query: 361 KMFGR 365 +G+ Sbjct: 325 VFWGK 329 >UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Halobacteriaceae RepID=D2S1W8_9EURY Length = 333 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 149/364 (40%), Gaps = 49/364 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L IW+ LV +L F DGFD GVG+L + ER ++ +I P WDGN+VWL+ Sbjct: 17 LADIWFGLVFFILGMFLFLDGFDFGVGILFA-TRDDKHEREQLLAAITPFWDGNEVWLVV 75 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 GGALFAA+P VYA FS Y+ M +L +L R + + + E+ W+ W +G Sbjct: 76 FGGALFAAFPAVYANLFSRHYLLMFAILGALILRGLAPEMYEQREDEPWQKWWGRAFIVG 135 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 SF P +G+ N L G L+ G++ G++ V + + G Sbjct: 136 SFTAPFFLGIFIANWLLG----------------TTALITLPGIVVGLMLVALTVVDGVA 179 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L+++T EL R A ++ L+ L V +N Sbjct: 180 FLRLKTRNELRDDVRTDGSRALVLYLILVVLTLGVVYITAPELRSALLSPLVVCLVVVNL 239 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + + + ++ AFV ++ + ++ Sbjct: 240 VLTG---------------------------IYAVATSSNRYYEAFVANAGLVFTLVSIV 272 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 M+P + LT+ +A S L LN+M+ A +L+P+I LY Y G I Sbjct: 273 ASLMYPHI-----DRVEGLTVEEAIVSTLPLNIMSIGAALLLPLIFLYFGVLYSVFSGPI 327 Query: 367 TKED 370 ++ Sbjct: 328 KADE 331 >UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Natrialba magadii ATCC 43099 RepID=C0G2G6_NATMA Length = 331 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 91/368 (24%), Positives = 149/368 (40%), Gaps = 50/368 (13%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 E L +W+ LV L + + DGFD G+G+L F ++++R +++ + P W N+V Sbjct: 11 MIESLPEVWFGLVVFALGVYLLLDGFDFGLGIL--FAEADESDREVLLAAFGPLWKANEV 68 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 WL+ G LFA +P VYA S Y+ + +L +L R +G R + ++ W WD Sbjct: 69 WLVLFGTVLFAGFPAVYANILSRHYLLVFAILLALSLRGLGSKLREERDDEEWVRFWDAC 128 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 GS P ++GV + + G L L+ GV V + I Sbjct: 129 FVAGSIASPFLLGVFVASWVLGEA----------------SALAIAPLVVGVTVVALSIV 172 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 GA +L ++T GEL + A + + F L + + G Sbjct: 173 LGAAFLGVKTRGELRDHVTRRGRQATGIYVGLFVLTAITLFVQYPGLHTVLLSAS----- 227 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 AI VV + T+ A ++ AF+ ++ A Sbjct: 228 ----------------------TAAIVVATVVFSIATVFAAFRERYHAAFLGAAGLAAAF 265 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 ++ G ++P + A L++ DA S L LN+ T A + +PII+ Y + Y Sbjct: 266 VVFVGTLLYPAI-----DPAAGLSVRDAVVSPLPLNMTTIFAAIFMPIIVGYFLFLYSLF 320 Query: 363 FGRITKED 370 G T E Sbjct: 321 SGPATPEQ 328 >UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8I8_KINRD Length = 346 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 154/378 (40%), Gaps = 47/378 (12%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M + L +W+ + + + F V +GFD GVG L LGR D ER + ++ P WDGN Sbjct: 1 MTSWVDLPVLWFGVTVLAWVLFFVLEGFDFGVGFLGPLLGRTDAERGAALRTVGPVWDGN 60 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 +VWL+ A G FAA+P YAA SG Y+ MI +L L R V ++R K + W D Sbjct: 61 EVWLVAAIGVTFAAFPDWYAALLSGLYLPMIALLLLLAVRGVAIEFRGKHDSASWHRRCD 120 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLY-YTGNFFQLLNPFGLLAGVVSVGM 179 + S + G G L+ G+ + + + + +L P+ +L G V + Sbjct: 121 AFLATSSLLLAGTWGAVLGALVTGLALDPGGEVHGGGLSRSLAPILGPWAVLGGFAGVLL 180 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 GAT+L +RT G + R R A A +V + + Sbjct: 181 TTVHGATFLALRTTGPVRARARRLAVATAPALVVIALALFIAAGHA-------------- 226 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 A L L + A A AF +S+ + Sbjct: 227 ----------------------------AVAAAAALLALAAVAAWRGAEALAFAATSVAV 258 Query: 300 ACIILTAGIAMFPF----VMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYT 355 A ++ A ++PS+ +T+ A +S+ L ++T VV++P +++Y Sbjct: 259 AGSVVAVFTAHLADGSWVLLPSTLSSANDVTLRAAAASEGALQLITVAGVVVLPAVVVYQ 318 Query: 356 AWCYWKMFGRITKEDIER 373 W YW R++ R Sbjct: 319 VWSYWVFRQRVSTGPAPR 336 >UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautiliaceae RepID=B9L7C1_NAUPA Length = 398 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 166/396 (41%), Gaps = 30/396 (7%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQV 62 + L+F WW++V VL G + F G L + +++ E R ++NS+ W+ Sbjct: 11 THFYLQFYWWIIVAVL-GGLFLFMTFVQGGQTLF-HVAKDEIEERGILNSLGRKWELTFT 68 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 L+ GGAL+AA+P+ Y+ +F G Y +L+L + + V ++Y ++ + + + Sbjct: 69 TLVMFGGALYAAFPLFYSVSFGGAYWVWMLILFAFVLQAVSYEYMNRTGNLIGKGAYKFF 128 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLN--------------PF 168 ++ V ++IG A G G F D R+ G N F Sbjct: 129 LYFNGVVGIVLIGAAVGTFFTGSNFTYDPATRILEWGTAKDGFNLRGLEAAIDFKHGAWF 188 Query: 169 GLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDG 228 L GV+ + GA +L + A V A + V V ++ + Sbjct: 189 NLAMGVLVFAVARILGALWLINDLDE------KDFADVVARLRAVVKRCFVVLLVALVIV 242 Query: 229 YVVKSTMDHYAASNPLNKE-VVREAGAWLVNFNNTPILWAIPALGVVLPLLTIL----TA 283 T+ YA K V AG +L N + I L V+ + + Sbjct: 243 LYGLITLKGYAYDIHDPKGTVSLVAGKYLQNLLAFGAIQLIVFLVGVVLFVLGVFQSGFG 302 Query: 284 RMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWV 343 K WA ++ + I+ T PS + +SLT+ +A+ S+ TL VM WV Sbjct: 303 SSRKGIWAAGLGTVLIGIIVFTLAGLNGTAFYPSYADLQSSLTIQNASGSKYTLMVMAWV 362 Query: 344 AVVLVPIILLYTAWCYWKMF--GRITKEDIERNTHS 377 + V VP +L Y + +++M G ITKE+I + H+ Sbjct: 363 S-VAVPFVLGYIIYVWYQMKKQGPITKEEILTDDHA 397 >UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038268B Length = 226 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 8/188 (4%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 L +W L+ + + + V DGFD+GVG+L R R M+ S+AP WDGN+ WL+ Sbjct: 14 WLPLVWAGLLALAVAMYVVIDGFDLGVGILF-TAARPGNWRDRMMLSVAPIWDGNETWLV 72 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 GG LFA + + YA Y+ +IL+L +L FR V F++R K E R R +WD Sbjct: 73 LGGGGLFAVFSVAYAILLPALYLPLILMLIALIFRGVAFEFRFKAE--RSRAVWDNAFHY 130 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS G+ G +Q + +G + L PF ++ G+ V A Sbjct: 131 GSLTATFAQGMVLGAFVQSF-----QTEGRSLSGGTLEWLTPFSVMTGIGLVSGYRLLEA 185 Query: 186 TYLQMRTV 193 + M+T Sbjct: 186 NWCVMKTP 193 >UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Geobacter RepID=C6DYH0_GEOSM Length = 349 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 73/364 (20%), Positives = 125/364 (34%), Gaps = 40/364 (10%) Query: 9 FIWWLLVGVLLIGFAVTDGFDMGVGML--TRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +++ L+ +A+ G D G G+ F R +R + N+I P W+ N VWLI Sbjct: 6 ILAAMVLVAGLLMYALFGGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIF 65 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD-WGIFI 125 LF A+P + F ++L L + FR F +R E + I Sbjct: 66 VIVTLFTAFPAGFGNLFIVLMTPLVLALVGINFRGAAFAFRHFGRELKKETPVSARVFEI 125 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 S + P +G+A G T F LN F LL GVV + + Sbjct: 126 ASVLTPFTLGLAVSATAAGRIVIAGRMP----TEQFSDWLNSFTLLGGVVGMAICAYLAP 181 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 Y+ +R GEL R + A L + +L Y + + Sbjct: 182 IYMTVRVTGELREDFRKESLAAGLALGILTSLMIPLAHYQAPLFAERLFNS--------- 232 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 L ++ ++T + + WA + + T+ + Sbjct: 233 ------------------WPMLFVMLAILAGVVTESLLWLRRYFWAQLIAGATIVFTMAG 274 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 A+ P ++ LT+ A + TL V + I++ + YW G Sbjct: 275 FVAALNPDILI------GQLTLRAAAAPHPTLVAFLAVLPIGALILVPSLVYLYWTFRGE 328 Query: 366 ITKE 369 + + Sbjct: 329 PSAD 332 >UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3F0_STRRD Length = 332 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 155/349 (44%), Gaps = 34/349 (9%) Query: 20 IGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVY 79 G+ V GFD G +L GR++ RR ++ ++ P++ GN+VWL+ A G LF A+P++ Sbjct: 14 TGYYVLAGFDYGAQLLLPLAGRDEGGRRRVLAALGPYFFGNEVWLVAAAGVLFGAFPLLE 73 Query: 80 AAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFG 139 SG Y+ ++L+L L R + + R +WD I G +P ++G G Sbjct: 74 GTLLSGLYLLVVLLLLGLVAGKAAVQLRGRSQSAAARRVWDVLIVAGGAIPAFLMGTLIG 133 Query: 140 NLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLR 199 LL GVP D + + +L+PF LLAGV V ++I G +L +RT GE+ R Sbjct: 134 LLLAGVPLRGDHG----FVLSPGDVLHPFVLLAGVTGVLLLIGHGGAFLSLRTTGEVASR 189 Query: 200 TRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNF 259 + A+ A W + NPL Sbjct: 190 ADSAARSALT-----------WAAAAVVVTFAAGLALGVRPPNPLVAT------------ 226 Query: 260 NNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSST 319 A L VLPL R + AF ++ +A + AG++ FP+++ SS Sbjct: 227 -------AATVLLAVLPLAGRRALRYGRPGRAFTATAAAVALPVPLAGLSTFPYMLVSSA 279 Query: 320 MMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 SLT + + TL +T VVL+P++L Y A+ +W GR+ Sbjct: 280 DPRHSLTFTEVAADAATLETLTAFGVVLLPVMLGYQAFGWWAFRGRVEA 328 >UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DN93_9ACTO Length = 338 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 143/347 (41%), Gaps = 32/347 (9%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAA 81 + V G D G +L +LG +++ RR + ++ P + GN+VWL+ G LF A+P + Sbjct: 18 YFVLGGLDYGAQVLRLWLGGDESARRSTLGALGPFFFGNEVWLVGFAGVLFGAFPFLEGK 77 Query: 82 AFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNL 141 SG Y + +L L R + + R R +WD F G VP G+ L Sbjct: 78 LLSGMYPLFLAILIGLVVGKTAVQLRGRADTVRGRRVWDVLAFAGGLVPAWSWGMLVALL 137 Query: 142 LQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTR 201 L+GVP D ++T QL PF L G S + +T GA +L R G R Sbjct: 138 LRGVPIGADG----HFTLTGAQLGEPFVLACGAASTALFVTHGAAFLAARVRGAAAGAAR 193 Query: 202 ATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNN 261 A +VT+V L + A A F Sbjct: 194 ALLPRLGVVTVV----------------------------ASLGAGGIGVASAVDDGFAA 225 Query: 262 TPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMM 321 A+ AL + + ++ +R A A + + L G+A +P ++ S+ Sbjct: 226 PAAAVAVGALLPIAVVAAMVASRRGWAKTAVTATGVAALVPALLPGVAHYPRLLVSTVSE 285 Query: 322 NASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 S+T+ A + TL +++ +V+VP+ILLY W +W R+ Sbjct: 286 RYSVTVSHAAADVETLKLLSAFGIVVVPVILLYQGWSWWAFRERVDS 332 >UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 Tax=Bacteroidetes RepID=C6XT47_PEDHD Length = 339 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 57/368 (15%), Positives = 123/368 (33%), Gaps = 40/368 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT--ERRIMINSIAPHWDG 59 + Y V+ F+W ++ + + G D G G++ + + R+ M +I P W+ Sbjct: 1 MIYVVIVFLWTAIL-----LYILLGGADFGAGIIELMTAKTNKAKTRKTMYKAIGPIWEA 55 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNM 118 N +WLI A LF +P +Y ++ ++ +L + R F +R+ + + + Sbjct: 56 NHMWLIIAIVILFVGFPKIYTTISVYLHIPLVCMLLGIIARGTAFVFRNYDAVKDDMQKI 115 Query: 119 WDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVG 178 + S + P +G+ + + G +D + + F LN F + G+ +V Sbjct: 116 YTPIFVYSSLITPFFLGIIAASSVSG---QIDPSANNFLSAYIFSWLNWFSVAVGIFTVS 172 Query: 179 MIITQGATYLQMRTVGE-LHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + ++ +T + A+ + + C AL + D Sbjct: 173 ICGFLATIFIIGQTDNDGDREHFVGKARRTIFIVMFCGALVFIAAYSEGIPLASWIFGDT 232 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + L+ + DK + + Sbjct: 233 PG--------------------------LIAIIAASISLLVMFYALKKDKPILLRLLAGF 266 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 + I+ A FP ++ N SL + T+ + + ++ IL + Sbjct: 267 QVTMILFAATYTHFPDIVLLKNGENLSLLTHQGQA--RTIASLGYALLIGSIFILPALVY 324 Query: 358 CYWKMFGR 365 + R Sbjct: 325 LIYIFQKR 332 >UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VWT6_DYAFD Length = 341 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 66/368 (17%), Positives = 137/368 (37%), Gaps = 40/368 (10%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTE--RRIMINSIAPHWDG 59 + Y V+ ++W ++ + + G D G G++ F + + + R+ + ++I P W+ Sbjct: 1 MLYIVITYLWASIL-----LYLLLGGADFGAGIIELFTSQKNKQVTRKTLYSAIGPIWEA 55 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNM 118 N +WLI A LF +P++Y+ ++ + ++L + R F +R +++ Sbjct: 56 NHMWLIIAIVILFVGFPVIYSTMSVNLHIPLTVMLIGIIARGTAFTFRHYDAVVDDMQHL 115 Query: 119 WDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVG 178 ++ + SF+ PL +G+ G+ + G ++D R + F L+ F + G+ +V Sbjct: 116 YNTIFAVSSFITPLFLGIIAGSAVSG---HIDPSARSFADAYIFSWLHWFAITVGLFTVS 172 Query: 179 MIITQGATYLQMRTVGE-LHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDH 237 + + YL T E LR AQ + +VC AL V + Sbjct: 173 ICGFLASVYLIGETKVEHERLRFAHKAQFFNIAAVVCGALVFVAAWFEHIPL-------- 224 Query: 238 YAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSL 297 + I + + K + Sbjct: 225 ------------------IDWVFGNWIGRIAILSATLSLIWMWTLLYQGKIRLLRPLAGF 266 Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 + I+LT FP ++ SLT + + T+ + W ++ +IL + Sbjct: 267 QVTMILLTTTFRHFPNIVVLKGGGYLSLT--EHAGHEKTVEALGWALLLGSILILPALFY 324 Query: 358 CYWKMFGR 365 + + Sbjct: 325 LIYSFQKK 332 >UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Halobacteriaceae RepID=C7NNR2_HALUD Length = 338 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 144/365 (39%), Gaps = 45/365 (12%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 + L IW+ ++ L + V DGFD G+GML +D +R ++ + P WD N+VWL Sbjct: 15 DSLPEIWFGVIMFALAMYIVLDGFDFGIGMLYA-TREDDHDRETLLAAFGPIWDANEVWL 73 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 I G L AA+P VY+ + Y+ + + +L FR VG + R + E+ W+ DW Sbjct: 74 IAFGTMLLAAFPDVYSRLLADNYLIALGFVLALLFRGVGPELREQREDESWQRACDWSFV 133 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS + P + GV G+ + V ++ +L GV V + G Sbjct: 134 GGSALAPFLFGVLAGSWVFSV-----------------GAVSLPAILTGVGLVAVSAVTG 176 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 A +L +T L R +A + L + V+ G + + Sbjct: 177 AAFLAAKTGPALAGEMRDLGILATVAYLAGVVVLLAVVIVTDAGGTAGTILSIPG----- 231 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 AI L VV L I+ A D V + + Sbjct: 232 ---------------------IAIVGLSVVAGLGGIVLALRDSYRAWLVSALALPTLLSA 270 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + ++P + P++ LT+ A S L LN+ T + ++ ++L Y + Y G Sbjct: 271 LVALLLYPAIYPATASGAE-LTVETAVVSPLALNLTTVLGFPVLVVVLWYFKFLYGVFSG 329 Query: 365 RITKE 369 I E Sbjct: 330 PIEAE 334 >UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB62_THET1 Length = 337 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 67/363 (18%), Positives = 136/363 (37%), Gaps = 41/363 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGML--TRFLGRNDTERRIMINSIAPHWDGNQVWL 64 L + L+ + L+ +AV G D G G+ + + +R+ + N+I P W+ N VWL Sbjct: 4 LNEVPALIGVLALMAYAVLAGADFGAGVWDLLAWGPKAKEQRKTISNAIGPVWEANHVWL 63 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKI-EETRWRNMWDWGI 123 I LF +P ++A +V L L + R F +R+ E +R+ + W Sbjct: 64 IFIIVLLFTCYPRAFSALSISLFVPFHLALLGIVLRGASFVFRAYAPERSRFASFWGSVF 123 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 S P V+G+ G + G + T + +P ++ G++++ Sbjct: 124 GSASLFTPFVLGMCMGAISAG----SIRQMGSKVTSDVSVWTSPVSIVMGLMALFEAAYL 179 Query: 184 GATYLQMRTVG-ELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 A YL + + +L R A ++ + A + Sbjct: 180 AAVYLTLESPDKDLQESFRIRALISGFIFAAVSLGALPVFSVYAPHLWERLL-------- 231 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 P + I LG+++ L++ K A + ++ + + Sbjct: 232 -------------------APSVVPIVFLGIIVGLVSAAALFFRKYWIARISAAGQVVIL 272 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 +L IA P+++ T+ ++++S+ TL + W + + I++ + Sbjct: 273 LLGWAIAQRPYIIYPE------FTVANSSASEATLRFVIWSVPIGMLILIPSLVVLFAVF 326 Query: 363 FGR 365 GR Sbjct: 327 KGR 329 >UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,subunit II n=5 Tax=Bordetella RepID=Q2KVX4_BORA1 Length = 348 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 70/360 (19%), Positives = 135/360 (37%), Gaps = 40/360 (11%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 + ++ L+ +L+ V DGFD+GVG+L + ER M++ ++P D N+ W + Sbjct: 19 WMPMVFMGLMLLLIAAGIVLDGFDIGVGILLQVAPA--EERGRMMSLLSPWRDANEFWPL 76 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 G +A+P + A Y + L++ + R V F++R + + W +G + Sbjct: 77 LGIGLFGSAFPFAWGAIMGKLYGPLTLMVLGIVLRSVSFEFRIRASTEV-KPRWIFGFWA 135 Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185 GS + + G+ G + + F L G+ +V GA Sbjct: 136 GSLLAAIGQGMVLGRIATDYQSDAGYG--------------WFSLFVGLCAVAAYALLGA 181 Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245 +L MR GEL R + A+ T V + G K + Sbjct: 182 CWLAMRVDGELQRRAASWARHGIRWTAAGMVAIAVTLGLANAGIFYKWSNA--------- 232 Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 A L + + + + L + A FV L ++ Sbjct: 233 --------AHLGAAAGVWVAMLLGFVAAEMLLARLPGKADRLAWLPFVLCVLLYLLMLAG 284 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + FP+++ +T+WD + + + ++ V+ P++L++ Y +FG+ Sbjct: 285 LAYSFFPYLI------LDDMTIWDGSGALGSSRLVLAGVVIGGPVVLVFNILAYRSVFGK 338 >UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AUB4_STRRD Length = 337 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 70/354 (19%), Positives = 125/354 (35%), Gaps = 40/354 (11%) Query: 10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT---ERRIMINSIAPHWDGNQVWLIT 66 I +++ V + +A+ G D G G+ GR+ +RR++ +SI P W+ N VWLI Sbjct: 6 ILLVVMWVGVTLYALLAGADFGGGVWDLVAGRSRAGMPQRRLIEHSIGPVWEANHVWLIF 65 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 L+ +P V+AA S Y+ + L + R F +R E + ++ Sbjct: 66 VIVVLWTGFPPVFAAVMSTLYIPLTLAALGIIARGAAFVFRKASTELWQQRLFGAAFATS 125 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S + P +G G + G L LNP LL GV++VG+ A Sbjct: 126 SVLTPFFLGAVAGGIASGRV-----PPGLAAGDLVTSWLNPTSLLGGVLAVGVCAYLAAV 180 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL C + +G+ ++ + Sbjct: 181 YL-------------------------CDDAGRAGLPGLAEGFRRRALSTGLGVGAVVLG 215 Query: 247 EVVREAGAWLVNFNNT-PILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305 + F+ + VL LL+++ V ++L + +I Sbjct: 216 GIAVVRWDAPRLFDGLTHRALPLVVAAAVLGLLSLVLLWRRSYLSVRVTAALAVTSVIWG 275 Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 +A +P ++P LT+ A + L V V +++ W + Sbjct: 276 WPLAQYPIMLPP------DLTVDVAAADPAVLGATLVVLAVGALLVVPSMTWLF 323 >UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Streptomyces RepID=B5HKZ6_9ACTO Length = 346 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 65/358 (18%), Positives = 125/358 (34%), Gaps = 39/358 (10%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG---RNDTERRIMINSIAPHWDGNQVW 63 + ++ + + +A G D G G G R R ++ +++AP W+ N VW Sbjct: 1 MADFIAWVLVLAIAAYACAGGTDYGAGFWDLLAGGAERGKRSRWLIDHAMAPVWEVNNVW 60 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 LI ++ +P ++ FS ++ + L L R GF R + ++ Sbjct: 61 LIFILVIMWTGFPTLFQTVFSAMWLPLALAAVGLVLRGAGFALRKPTRRLAQQRIYGAVF 120 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 I S + P G G + G ++ T + N +L G++++ Sbjct: 121 AISSLLTPFFFGAVLGGIASG-------RVKPGTTASTDAWANGTSVLVGLLAIAATAFL 173 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 GA +L L + L+ FA+ V + + Sbjct: 174 GAVFL---CSDALRFGADDLVDYFRVRVLIAFAVVVVLALIALP---------------- 214 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 V ++ + + + L V L T+L W+ S ++A ++ Sbjct: 215 ----VTHNDARYVWDGLTGGLGLLLVILAAVCGLATVLLVWRRSYGWSRHTSVASVALVV 270 Query: 304 LTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWK 361 G A P+++P SLT+ +A + TL + V V + ++ Y Sbjct: 271 GAWGCAQRPYLLP------ESLTVAEAAGAAHTLRWLVIVTAVAIVLVGPALVLLYRL 322 >UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Halobacterium salinarum RepID=B0R8N6_HALS3 Length = 331 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 144/365 (39%), Gaps = 51/365 (13%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 + L +W+ V L + V DGFD G+GML ++ ER + + P WD N+VW+ Sbjct: 14 DSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYA-TRTDEHERETFLAAFGPVWDANEVWI 72 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + G L AA+P VY+ + Y+ + + +L FR +G + R + E+ RW+ D+ Sbjct: 73 VAFGTMLLAAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFV 132 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 GS PL++G+ G L F +L GV V + I G Sbjct: 133 GGSVFAPLLLGMLAGRWL-------------------FAGATLPVVLTGVGLVAVSIVTG 173 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 A +L +T L R+ A + L + V+ G + + Sbjct: 174 AAFLAAKTDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASAVLSLP------ 227 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 + A+ AL +V L + AR + + + L Sbjct: 228 --------------------VAAVVALSIVAGLGGSVLARRGRYRAWLASALALPTLLTL 267 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 + ++P V P + L + +A S L LN++T + ++ ++L Y + Y G Sbjct: 268 LVAVLLYPTVYPPT-----GLLVREAVVSPLALNLVTVLGFPVLLLVLWYFKFLYGVFSG 322 Query: 365 RITKE 369 I E Sbjct: 323 PIEGE 327 >UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTP2_9PLAN Length = 341 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 125/363 (34%), Gaps = 43/363 (11%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG--RNDTERRIMINSIAPHWDGNQVWLI 65 I +++G + + G D G G+ N+ ER+++ ++I P W+ N +WLI Sbjct: 6 ELIVGIVLGAATTLYLLFGGADFGAGIWEINTAFQSNEKERKLLYHAIGPVWEANHIWLI 65 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSK-IEETRWRNMWDWGIF 124 LFAA+P+ + A S F + LVL + FR G+ +R+ I+ R + W Sbjct: 66 FVLVVLFAAFPLAFQALCSAFIIPAFLVLVGIVFRGAGYVFRAYSIDSGRQQQFWRTLFA 125 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 S P +G G L G + +Y + P L +VG+ Sbjct: 126 GASAAAPFFLGAIAGTLASG--DSKINAAGVYEGNYLTDWITPMALFTAFFTVGLCCYLA 183 Query: 185 ATYLQMRTV----GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 A +L EL L R A + V A+ V+V Sbjct: 184 AVFLTREAEHSGEVELTLVWRQRALATGIWMGVLAAVGLVFVSLEAPELAHGFATR---- 239 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 W + AL + ++L K A + L A Sbjct: 240 ------------------------AWPLVALSAICGTGSLLLLLWRKYTPAAACTMLAAA 275 Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 II GIA +P + P LT+ D+ + L M I+ A ++ Sbjct: 276 NIIWGWGIAQYPVIAPPF------LTLADSKAPDSVLWAMIGAVAAGAVILGPSLALLFY 329 Query: 361 KMF 363 Sbjct: 330 LFK 332 >UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms RepID=B9P917_POPTR Length = 462 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 95/167 (56%), Positives = 118/167 (70%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 +I Y++LR +WW L+GVLLI FAVTDGFD+G L R D ERR++INS+ P W+GN Sbjct: 215 LISYDILRLLWWGLLGVLLIAFAVTDGFDLGAAALLPLAARTDVERRVVINSLGPVWEGN 274 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 QVWLI GGA+FAAWP +YA +FSGFY+AM L +L RPV F +RSK EE WR WD Sbjct: 275 QVWLILGGGAIFAAWPQLYAVSFSGFYLAMFAALVALILRPVAFKFRSKREEPAWRARWD 334 Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNP 167 + + VP L+ GVA GN+LQGVPF + +R+YY G FF LLNP Sbjct: 335 AVLCMAGVVPALIFGVALGNVLQGVPFRLAPDMRIYYEGTFFGLLNP 381 >UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 Tax=Myxococcales RepID=A7H8Z5_ANADF Length = 351 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 67/342 (19%), Positives = 116/342 (33%), Gaps = 41/342 (11%) Query: 26 DGFDMGVGMLTRFL--GRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAF 83 G D G G+ R +R ++ +I P W+ N VWLI LF +P +AA Sbjct: 22 GGADFGGGIWDLLATGPRRKAQRDLVEQAIGPIWEANHVWLILVIVLLFTCFPSAFAAIS 81 Query: 84 SGFYVAMILVLASLFFRPVGFDYRSK-IEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLL 142 +V ++L+L + R F +R+ E + + W S + P+V+GV G + Sbjct: 82 IALFVPLVLLLFGIVLRGAAFTFRTYDRPEDKVQVRWGLVFSSSSVLAPVVLGVVVGAIA 141 Query: 143 QGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRA 202 G E + L+PF L G+ + + A+YL + GEL R Sbjct: 142 SGRLAGPPEGVD------PLAWLSPFPLSVGLFAAALFAFLAASYLAVEAKGELQEDFRR 195 Query: 203 TAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNT 262 A A V LAGV + T ++ + + Sbjct: 196 RAIGAGGVVFGAAVLAGVLSWFDAPLVFAGLTRRGFSLPLHAATALAAVTAFAALFRRRY 255 Query: 263 PILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMN 322 + A + + I+L G + +P+++ Sbjct: 256 RLARAAA--------------------------AAQVTLIVLGWGASQYPYLVVP----- 284 Query: 323 ASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 LT+ DA++ + T + W + + G Sbjct: 285 -GLTLADASAPRATQVAVLWALAAGAVFLFPALYLLFRVFKG 325 >UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V528_9AQUI Length = 242 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 31/262 (11%) Query: 109 KIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPF 168 K E W+ WD ++G+ VP L+ GVA GN + G+P + Y G F QLLNP Sbjct: 6 KKESKTWKAAWDIAYWVGNTVPALLFGVAVGNAVLGIPIDEKG----VYHGTFIQLLNPT 61 Query: 169 GLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDG 228 +L G VS+ M + G YL ++T G+ + A V + + LA +++ Sbjct: 62 AVLMGFVSLFMYLMHGTAYLLIKTEGKPFEFAKKGAVVGFIGFVASLILADFFIIAIKPT 121 Query: 229 YVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTI-LTARMDK 287 +NF + P+ W P L ++ +L +K Sbjct: 122 L--------------------------FLNFFDYPLFWIAPFLMILGLVLYFKYLVVDEK 155 Query: 288 AAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVL 347 S LT+ +LT +A +P + SS +LT+W++ SS LTL +M ++ Sbjct: 156 YNKVIYGSILTILGTVLTIALASYPVFIHSSIDEKYNLTIWNSASSDLTLTIMLISTLIF 215 Query: 348 VPIILLYTAWCYWKMFGRITKE 369 +P+I+ YT + Y G+++ E Sbjct: 216 LPLIIGYTVYVYRVFKGKVSAE 237 >UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEE2_9BACT Length = 344 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 111/364 (30%), Gaps = 34/364 (9%) Query: 13 LLVGVLLIGFAVTDGFDMGVGML--TRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGA 70 +G L+ + + G D G G+L GR + ++ ++ ++ P W+ N +WLI Sbjct: 7 FFIGASLLLYVLLGGSDYGAGILELLPAGGRREAQKHVINEAMGPVWEANHIWLILVIVV 66 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE--ETRWRNMWDWGIFIGSF 128 LF +P ++ ++ M+ +L + R F +R + ++ + S Sbjct: 67 LFVGFPTIFTTLMVALHIPMLALLVGIVVRGTAFTFRHYDAIQAPASQRVYTVLFGVSSL 126 Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFF--QLLNPFGLLAGVVSVGMIITQGAT 186 L +G+ +L +G+ E + + L G+ + + Sbjct: 127 WSALWLGIIVASLGRGLIDTSAEAAHELGPWGVYVAPWWGAYPLAVGLFVACIFVFLACV 186 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 YL T R + AA+ G + Sbjct: 187 YLIDETEDA--GLKRRFTRCAAVFNCAVIVAGG-----------------------GVFA 221 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 E + F P+ + AL +L + + + + + I+L Sbjct: 222 ASYGERESLPSVFFRNPLTLGVMALATLLFVALWMAIWRRNVLVTRIVAGGQVTLILLGW 281 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 + P + L+ + + L + + I + R+ Sbjct: 282 WLLYAP---VAVLTAGGPLSFYAEAAPPAVLLQLVIALLAGSCFIFPSLVFLLRVFKRRL 338 Query: 367 TKED 370 + Sbjct: 339 NDAE 342 >UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=A9AX76_HERA2 Length = 336 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 60/364 (16%), Positives = 132/364 (36%), Gaps = 44/364 (12%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGML--TRFLGRNDTERRIMINSIAPHWDGNQVWL 64 L + + + +I +A+ G D G G+ + R +R + +++ P W+ N VWL Sbjct: 3 LEVVVAAIGLLGVITYAILAGADFGGGIWDLLAWGPRRTQQREAIAHAVGPVWEANHVWL 62 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWR-----NMW 119 I LF +P +AA G + L L + R F +R+ + + W Sbjct: 63 IFIIVVLFTGFPTAFAALSIGLFAPFHLALLGIILRGAAFVFRAYSPQKEQQPSQSSQRW 122 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 S + P+++G+ + G +D ++ + P + G++++ + Sbjct: 123 GTIFGAASVITPVILGMTLSAVSAGQLRVIDGVVQSE----GIVWMTPLAIAMGLLALAL 178 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 A Y+ + T EL R A +A + L+ + + A Sbjct: 179 CAYLAAVYMTIETRDELQADFRQRALLAGTAVVGLSLLSLPLLYFTAQHLWEGLISVRAA 238 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + +G++ LL+ + A + + + Sbjct: 239 ---------------------------PVLTIGLLAALLSGWALLRWRFQLARGAAIVQI 271 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 +C++ GIA +P+++ +T+ A++ + TL + + + I+L + + Sbjct: 272 SCLLAGWGIAQYPYIIYP------DITLATASAPRATLIFILVALPLGLLILLPSLWFLF 325 Query: 360 WKMF 363 Sbjct: 326 KVFK 329 >UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 Tax=Frankia RepID=Q2JGE7_FRASC Length = 330 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 64/356 (17%), Positives = 120/356 (33%), Gaps = 41/356 (11%) Query: 13 LLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT--ERRIMINSIAPHWDGNQVWLITAGGA 70 +++ V L +A+ G D G G+ +R+++ S+ P W+ N VWLI A Sbjct: 9 IIMVVGLTAYALLGGADFGGGVWDLLARGRHAGDQRKLISASLGPVWEANHVWLIFIVVA 68 Query: 71 LFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWR-NMWDWGIFIGSFV 129 +F+ +P Y S V + + L + R + YRS + W + S + Sbjct: 69 MFSGFPEAYGVIGSSLEVPLSVALVGIVLRGAAYVYRSYGAGGAGPDHWWGHVFAVSSTI 128 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 P +GVA L G L F + +PFGL+ G +V A YL Sbjct: 129 APFALGVAGAALASG---------DLSTDDPFAPVRSPFGLVCGAFAVAATAFLAAVYL- 178 Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 R A A LV + G + + A P Sbjct: 179 ----------CRDAASSPATAHLVADFRRRAIGGAVLCGALAAILLPLLWADAPQVAGRF 228 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 R+ + AL + + ++ ++ A + + L + ++ +A Sbjct: 229 RDRS------------LPLVALSTLGGIGALVALWREQFGAARIAAGLAVGAMLWGWAVA 276 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 +P ++ T+ A + + M + + +++ + Sbjct: 277 QYPDLVVGQA------TVDTAAAPTTNIRAMLFAIAGGLVVLVPSLMMLFRLFSRP 326 >UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Gramella forsetii KT0803 RepID=A0LZZ1_GRAFK Length = 341 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 112/308 (36%), Gaps = 30/308 (9%) Query: 22 FAVTDGFDMGVGMLTRFLGRNDT--ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVY 79 + + G D G G++ F R + R + N I P W+ N +WLI L+ A+P + Sbjct: 16 YVLLGGADFGAGIVELFSSRENKKLNRDTVYNVIGPVWEANHIWLIILIVILWIAFPGYF 75 Query: 80 AAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNMWDWGIFIGSFVPPLVIGVAF 138 ++ + LVL + R V F +R + ++ ++ I S + P+ +G++F Sbjct: 76 NIIIIYLHIPLTLVLLGITMRGVAFIFRHYDAVVDKSQDWYNHMFRISSLITPIFLGMSF 135 Query: 139 GNLLQGVPFNVDEYLRLYYTGNFFQ-LLNPFGLLAGVVSVGMIITQGATYLQMRTVGELH 197 G L+ G ++Y + F LN F L G+ + +T L T G++ Sbjct: 136 GALISGKIMVTNDYSETTFPEIFMDPWLNIFTFLTGLFYASLCAFLASTLLIGETTGDIR 195 Query: 198 LRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLV 257 + + +V +V + +V Sbjct: 196 KMYSRKSAIFTVVLVVIGGTVLGYGYLTEMVFVE-------------------------- 229 Query: 258 NFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPS 317 +F + + L ++ + R +F+ + + +I A FP ++ + Sbjct: 230 DFLHNWVSLIAVGLSGLILIPLWRAIRNQHRLLTRIFAGMQILLVIFAAVYTHFPNLIIT 289 Query: 318 STMMNASL 325 T L Sbjct: 290 QTGEVNML 297 >UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8S6_9DELT Length = 344 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 74/361 (20%), Positives = 128/361 (35%), Gaps = 41/361 (11%) Query: 12 WLLVGVLLIGFAVTDGFDMGVGMLTRFL--GRNDTERRIMINSIAPHWDGNQVWLITAGG 69 + L+GV +I +AVT G D G G+ R + +R ++ +IAP W+ N +W+I Sbjct: 7 YWLIGVAVIAYAVTAGADFGGGLWDLLATGPRRERQRELIAEAIAPIWEVNHIWMIFVVV 66 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNM-WDWGIFIGSF 128 LF+ +P +A +V ++LVL + R F +R+ E R W I S Sbjct: 67 MLFSVFPHAFAVVSIALHVPILLVLVGIVLRGSAFIFRAYGMEPDERRAQWGRVFAITSA 126 Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYY--TGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 P+ +G L G + +G F +PF L G+ ++ + AT Sbjct: 127 ATPIALGAILAALSSGDILVELDAAGAPQVRSGFFVGWTSPFALAVGLFTLALFTMLAAT 186 Query: 187 YLQ----MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 YL +R EL + R A ++ V L Sbjct: 187 YLAREAQVRGELELSIDFRRRAVISEAVAGALAMLVCWRAWAESPEL------------- 233 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 N P AL + + I+ R D A + +A + Sbjct: 234 -------------FHNLLAQPWSLPAQALTAAVAVAAIVCLRRDMLQVARALVIVQVALV 280 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 ++ G+AM ++ + DA + + L + +V + + W + Sbjct: 281 VVGWGVAMDGDLVLGALDHQ------DAGAREAVLARLPYVLAGGSVLFVPALWWLFRVF 334 Query: 363 F 363 Sbjct: 335 K 335 >UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV22_9ACTO Length = 317 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 77/357 (21%), Positives = 144/357 (40%), Gaps = 49/357 (13%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + ++++L+G + G+ G+D GVG+L R GR DTERR+++ ++ P + GN+VWL+ Sbjct: 1 MAELFYVLLGAVFAGYFALAGYDYGVGVLLRLCGRTDTERRLILGALGPFFLGNEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G L AA+P+ A +G Y A+ ++A++ RS+ T R +WD I Sbjct: 61 GLGLLLAAFPLAEGALLTGLYPALFPLIAAIVLFTAAVQIRSRA--TFARPLWDLLIVGS 118 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + + G +FG +LQG+P P ++ G ++ + GA+ Sbjct: 119 AALISFGWGASFGLVLQGMPVR----------------FGPLPIITGALTTALFTMHGAS 162 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 L +RT + R +V A + Sbjct: 163 LLAVRTPDPIRGRAALIGSRMTFSAVVLVIAAALTAAVN--------------------- 201 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 N I + + L + R ++ A + + ++ A Sbjct: 202 ---------AHAVNQPVIAAIGALALIAVILASQRLRRRNRPGLALIATGTAATLPMIIA 252 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363 AM+P++ SLT+ A ++ +L+ + AV ++P++L + A +W Sbjct: 253 AAAMYPYLYVD-LDAAHSLTLTQAVAANSSLDFLLATAVPVLPVLLGFQAATWWIWR 308 >UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A4FDV9_SACEN Length = 340 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 126/368 (34%), Gaps = 39/368 (10%) Query: 13 LLVGVLLIGFAVTDGFDMGVGMLTRFLG---RNDTERRIMINSIAPHWDGNQVWLITAGG 69 ++ + L + + G D G G+ G R +R ++ +SI P W+ N VWLI Sbjct: 9 AVLWIGLTLYVLFGGADFGGGLWDLLAGGAERGRPQRELIEHSIGPVWEANHVWLIFVIT 68 Query: 70 ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129 + +P +A + Y+ + L + R F +R +E R R ++ S V Sbjct: 69 LFWTVFPAAFAPFAATLYIPLTLAALGIIARGAAFAFRKVSDEFRQRRLFGAAFAFSSVV 128 Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189 P +G G + G L NP + AGV++V A +L Sbjct: 129 TPFFLGTLLGAVASGRV-----PPDLASGDVLTSWWNPTSVTAGVLAVVTTAYLAAVFL- 182 Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 T R A L LV + G+ + + V + + Sbjct: 183 --TADARREREPELASAFRLRALVSGVVLGMLTLAALPVVRVDAPHLFAGLTGK------ 234 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIA 309 + VV LL++ + + +++ + ++ G+A Sbjct: 235 ---------------ALPLVVTSVVAGLLSLALLLARRYLLVRITAAVAVTAVLWAWGVA 279 Query: 310 MFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKE 369 +P ++P +T+ DA ++ L + WV V +++ + Y + Sbjct: 280 QYPVMLP-------GVTVADAAAAPSVLVPVLWVLAVGSVLLVPSLLYLYAIFQRDPARA 332 Query: 370 DIERNTHS 377 H Sbjct: 333 PGASAGHG 340 >UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase subunit II n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55F87 Length = 329 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 148/369 (40%), Gaps = 43/369 (11%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGR--NDTERRIMINSIAPHWDGNQVWL 64 + IWW ++G+LL G+ G+D GVGML L R ++ +R ++ ++ P + N+VWL Sbjct: 1 MVTIWWGVLGLLLGGYFALAGYDYGVGMLLPALARSRDEAGQRRVLGAVGPFFLANEVWL 60 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + A G LF A+P + F+G YV ++L+L L RS+ E R W + I Sbjct: 61 VAAVGVLFGAFPHLEGRVFAGAYVLVVLLLLGLVTFTAAVQLRSRHPEGS-RRGWTFAIT 119 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 G+ V + G+ GNL++G+P + L NP+ +L G+ V + QG Sbjct: 120 AGALVTAVSWGLFLGNLVRGLPLDAHGRPIDD----VLALFNPYAVLWGLGFVALFCLQG 175 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 +L +R EL R R + V A+A VW + Sbjct: 176 LVFLAVRGPAELTGRVRRLTRSLLPPVGVFLAIATVWGAF-------------------- 215 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 V + A L + + G+ K A L AC L Sbjct: 216 --SVTDGSWAALAVVAVAFAAYLLVLFGL------------RKPRLALPAVMLLSACPAL 261 Query: 305 TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFG 364 G+ FP V+ SS LT+ A ++ V+ W A + ++L + Sbjct: 262 LVGVLRFPVVLSSSA--GYQLTVEQAATTPDMTAVLGWFAAPALLVLLAAQWLTWRAHRR 319 Query: 365 RITKEDIER 373 + + + Sbjct: 320 PVDENSLLH 328 >UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZA12_PLALI Length = 345 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 129/379 (34%), Gaps = 43/379 (11%) Query: 3 DYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTR--FLGRNDTERRIMINSIAPHWDGN 60 D + I + + + L +A+ G D G G+ + +R+++ I P W+ N Sbjct: 4 DAILPASILYGTLLLALTAYAILGGADFGAGIWEFNTSFRSHRRDRQLLREVIGPVWEAN 63 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE-ETRWRNMW 119 VWLI L++A P V+ ++ ++L LA + R F +R+ E Sbjct: 64 HVWLIFVLVILWSAMPRVFQHLCVVMWLPLLLGLAGIVCRGAAFIFRAYSPVENSVTRAS 123 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 + S P +G G +L + LNP + +G +V + Sbjct: 124 TVLFGLASTAAPFFLGTVVGGILT--------REATNPRLSQTAWLNPLAIYSGFFAVAV 175 Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239 + + +L + + + L+GVW G + + + + Sbjct: 176 CLYLCSVFL-------FREASLRHERFLMEIWRSRAMLSGVWT-----GLLAMAGLAFVS 223 Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299 + P + + + L + +++ A + S L + Sbjct: 224 SEQPEMARRLIWGDS------------PLVLLSWAGGMFSMVALYFRWPLAAVLASVLAV 271 Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359 A ++ AG+A+ P M + + L M + ++L AW + Sbjct: 272 AAVLWGAGLAVSPATMIPEIP------LDQLVAPPSVLWAMLVAIAGGMLLLLPSLAWLF 325 Query: 360 WKMFGR--ITKEDIERNTH 376 W + E + ++H Sbjct: 326 WLFKSSSALDHEHLAHSSH 344 >UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJB4_CATAD Length = 338 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 61/340 (17%), Positives = 108/340 (31%), Gaps = 40/340 (11%) Query: 29 DMGVGMLTRFLG--RNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGF 86 D G G+ D ERR++ +++ P W+ N VWLI A F+ +P + G Sbjct: 25 DFGAGVWDLLARGRHADRERRLIAHALGPVWEANHVWLIFVIVATFSGFPTAFGIIARGL 84 Query: 87 YVAMILVLASLFFRPVGFDYRSKIEETRWR-NMWDWGIFIGSFVPPLVIGVAFGNLLQGV 145 + + L LA + R + YR+ E ++W + S + P ++GV+ L G Sbjct: 85 ELPLALALAGIVLRGAAYVYRAYGEGAAGPDSLWSRVFAVASSITPFMLGVSGAALATG- 143 Query: 146 PFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQ 205 +G +PF L+AGV +V + A YL Sbjct: 144 -------KITATSGPLTPFDSPFTLVAGVFAVVVTAFLAAVYL-----------CHDAGT 185 Query: 206 VAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPIL 265 LV + G V + + P+ E Sbjct: 186 DPETEDLVPAFRRRALGAAAVAGVVSMALLPLLYQDAPIVAHRFTERS------------ 233 Query: 266 WAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASL 325 A+ VV ++ A ++ + ++L A +P + + S Sbjct: 234 IPFVAVAVVCGFGSLAVIWKRHYVLARATAATAVIGVLLGWAAAQYPDLAVGAATARGS- 292 Query: 326 TMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + L+ + + +IL G Sbjct: 293 -----AAGPANLHALLIAMGFGMVVILPAFYLLLKVFSGP 327 >UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CZ56_9RHIZ Length = 251 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 17/221 (7%) Query: 5 EVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWL 64 E L +I+ L+G+ ++ + + DGFD+G+G+L+ +DT++ M+++I P WD N+ WL Sbjct: 8 EWLPYIFAALMGIAILVYVILDGFDLGIGILSPLA--DDTQKDRMVSAIGPFWDANETWL 65 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + A G L A+P+ + + Y + ++L L R V F++R+K+ + W+ F Sbjct: 66 VLAVGLLLVAFPVAHGVILTTLYFPVAVLLIGLILRGVAFEFRAKV-SLDAKPSWNRMFF 124 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 IGS + L G G + G+ + F L V G Sbjct: 125 IGSLMSALAQGYMLGLYVLGLDTSWPAVG--------------FAALVAVCLAAAYAAIG 170 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG 225 A +L +T G L +R + + + + A + Sbjct: 171 AAWLIHKTEGTLQVRAVKWLRASLGLVALGMAAISLATPLA 211 >UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TGE2_RICCO Length = 325 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 71/201 (35%), Gaps = 6/201 (2%) Query: 86 FYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGV 145 Y + +L +L R V +RS R + WD + GS + GV G+L+QG+ Sbjct: 1 MYPVIFAMLFALILRGVAIGFRS-EATARAKARWDAVMLTGSTMAAFCQGVLVGSLVQGI 59 Query: 146 PFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQ 205 R Y G + L F L GV GA++L RT G L R R + Sbjct: 60 -----RTARGTYQGGPWDWLGAFALFCGVALALGYAWLGASWLIWRTEGSLQQRARRASL 114 Query: 206 VAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPIL 265 T A+ +W ++ D Y + T D + P+ V A V Sbjct: 115 ALGTATAASTAIVSLWTLHLNDYYARRWTDDSGGVALPVAVFVFASLAAGFVYGIARRRA 174 Query: 266 WAIPALGVVLPLLTILTARMD 286 +A ++ Sbjct: 175 FAPLVFALICVAAVYHHRARQ 195 >UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SIK0_9ACTO Length = 335 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 144/361 (39%), Gaps = 33/361 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + W+ L+G+ + V G+D GVG+L G R + ++ P + GN+VWL+ Sbjct: 1 MELAWYALLGLFFATYLVLGGYDYGVGLLLARRGPAPGNRATL-TALGPFFLGNEVWLVA 59 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G LF A+P + SGFY A++ LA + G RS+ R WD + +G Sbjct: 60 AVGILFGAFPRLEGELLSGFYPAVLAALAGVVLVTAGVQLRSRPASAAARARWDRVVVVG 119 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 + L G LLQGVP + D ++ L PF AG+ + ++ GAT Sbjct: 120 CLLAALGWGAVLAGLLQGVPLSADGHVV-----GVGHLATPFVAAAGLALLALVAVHGAT 174 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 +L +R A LV A V + + Sbjct: 175 FLTLRLPAAEAPALARLASGLVPAALVAVGAATVLGVLSDRVRAAVARPAVAVLLPLALV 234 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306 + A A L AF ++ LA Sbjct: 235 AALLAARAALRRGRAGV---------------------------AFAATATALALPAPLI 267 Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366 G A++P ++ S+ ASLT+ +A + + TL ++ W+A+ L+P +L + A C+W GRI Sbjct: 268 GAALWPRILVSTADPAASLTVAEAAAGRPTLALLGWLALPLLPALLGFQAMCWWVFRGRI 327 Query: 367 T 367 Sbjct: 328 D 328 >UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit 2- like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDC Length = 424 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 108/323 (33%), Gaps = 38/323 (11%) Query: 17 VLLIGFAVTDGFDMGVGMLTRFLGRNDTE---RRIMINSIAPHWDGNQVWLITAGGALFA 73 V LI + V G D G G GR + R S+AP W+ N VWL+ + Sbjct: 13 VGLILYVVLAGADFGAGFWQLAAGRGERGSRIREHAHASMAPVWEANHVWLVFILVIAWT 72 Query: 74 AWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLV 133 +P +A+ S + + + + FR + R+ + R + D + S + P Sbjct: 73 CYPEAFASIASTLSIPLFIAAIGIVFRGAAYALRAGTSQRRELRVIDTVFAVSSILTPFA 132 Query: 134 IGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTV 193 +G G + G + + N L GV++V A YL Sbjct: 133 LGTVIGAIASGRVPVGNAAGD-----AWTSWTNTTSLTIGVLAVVTSAYIAAVYLAADAA 187 Query: 194 GELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAG 253 + + AL T + + V + V+R+ Sbjct: 188 RDGDAEMEEAFRHRALGTGLVAGVVAVAGLL-----------------------VLRDDV 224 Query: 254 AWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPF 313 L + + + + + T+ WA ++L +A +I +A P Sbjct: 225 RSLYDELVSGDGLPALIVSALAGIGTLALVARRSYEWARYSAALAVAAVIAGWALAQSPV 284 Query: 314 VMPSSTMMNASLTMWDATSSQLT 336 ++P LT+ A +S T Sbjct: 285 LLPG-------LTVEQAAASHDT 300 >UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=C3DRT5_BACTS Length = 121 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 71/121 (58%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65 +L IW+ L GV+ + + DG+ +G GM+ F+ ++ ER + +I P W GN+VWLI Sbjct: 1 MLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGNEVWLI 60 Query: 66 TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125 TAGGA FAA+P+ YA FS Y + LVL +LF R G ++ K + W+ W I Sbjct: 61 TAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAI 120 Query: 126 G 126 G Sbjct: 121 G 121 >UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5X6_STRRD Length = 249 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 92/252 (36%), Gaps = 28/252 (11%) Query: 14 LVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFA 73 L+ +G+ V G D+GVG L +LGR+D ER ++ SI P + GN+VWLI + G L Sbjct: 5 LLAFFAVGYFVLAGADLGVGALLPYLGRSDDERGRVLASITPFFLGNEVWLIASAGILVG 64 Query: 74 AWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLV 133 A+P++ SG YV +++L R G R +++ WR D + GS+V L Sbjct: 65 AFPVLEGELLSGMYVPFVMLLLGWVVRDAGIWLRGRVDRAGWRGGCDGAVAAGSWVVVLS 124 Query: 134 IGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTV 193 G + Q + + + V + G + +R Sbjct: 125 WGFILPGMGQEPVTGLGAAIVVP------------------AVVALFCAHGLAFAGLRLA 166 Query: 194 GELHLRTRAT----------AQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 G R R A A + LVC + + + Sbjct: 167 GGPRERARRFYGASSERTIYALTAGGMALVCLLAGSRLPLAENLADPATLALLTPSLLVI 226 Query: 244 LNKEVVREAGAW 255 V + W Sbjct: 227 TPVLVASQVWLW 238 >UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A755_THECD Length = 248 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 15/187 (8%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + IW L+ L G+ +GFD+GVGML LGR +R +MI +IAP N+VWL+ Sbjct: 1 MELIWLGLLVALPAGYFALEGFDLGVGMLLPVLGRTRRDRDLMIAAIAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 A G L A+P++ G Y ++++L + R G +R +++ WR +WD I Sbjct: 61 AAGVLIGAFPLLEGKVLFGLYPLVVVMLLAWVLRDAGLWFRRRLDGDAWRTLWDAVIAAA 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S L G+A + G L +P GLL GV G Sbjct: 121 SLTLSLCWGMALYAITTGFT---------------APLWHPLGLLLGVTLTLAFALHGRA 165 Query: 187 YLQMRTV 193 +L R Sbjct: 166 FLGRRVP 172 >UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Burkholderia pseudomallei 406e RepID=A8EQ33_BURPS Length = 278 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 L +W ++ + ++ + + DGFD+GVGML F R++ ER MI S++P WD N+ WL+ Sbjct: 5 LVPLWAGVLALSVLMYVLLDGFDLGVGMLFFFH-RDEAERDRMIASVSPVWDFNETWLVL 63 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G L AA+P ++ Y ++ +L L FR V F++R + +W IG Sbjct: 64 GGTLLLAAFPGAFSVVVPAVYFPVLAMLLGLLFRGVAFEFRGVAG--ARKTVWSRAFAIG 121 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQ 163 S V GV G +QG + + Sbjct: 122 SLVATAAQGVVLGMFVQGFVCVIAFIAVVSVWTPLAD 158 Score = 74.2 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 12/203 (5%) Query: 170 LLAGVVSVGMIITQGATY--LQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGID 227 ++ V + + G + + G R ++ A+ +LV A GV + + Sbjct: 79 VVPAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAIGSLVATAAQGVVLGMFVQ 138 Query: 228 GY-VVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMD 286 G+ V + + + PL + N +P L L L + R Sbjct: 139 GFVCVIAFIAVVSVWTPLADARIAARWFAWPNLL---FFSPVPVLTAALAWLAARSLRRG 195 Query: 287 KAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVV 346 A FV S I+++P V P S+T+W A S+ + + Sbjct: 196 GEALPFVASIGLFFLAFSGLTISLWPHVAPP------SITLWSAASASASQEFLMIGTAF 249 Query: 347 LVPIILLYTAWCYWKMFGRITKE 369 ++P++L Y W YW G++ + Sbjct: 250 MLPVLLFYVCWSYWVFRGKVRGD 272 >UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BDC9_STRRD Length = 255 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 15/195 (7%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + +W ++ +LLIG+ +G +G GML LGR +R ++ ++AP N+VWL+ Sbjct: 1 MDILWTGVLALLLIGYFALEGSGIGAGMLLPALGRTQPDRDRVVAAMAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G LF A+P + SG Y ++ +L S R G +R +++ WR WDW I +G Sbjct: 61 VAGVLFGAFPSIEGEVLSGLYPLVVTLLVSWILRDAGLWFRRRLDGHAWRAGWDWMICLG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S+ L G+A + G+ L V G T Sbjct: 121 SYGLALSWGMALVAMAGGLSGPPIGLPGLGGGL---------------VVAAAFALHGWT 165 Query: 187 YLQMRTVGELHLRTR 201 +L R G++ +R Sbjct: 166 FLSWRLPGQVTGASR 180 >UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n=2 Tax=Bacillus RepID=Q5WII1_BACSK Length = 346 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/360 (13%), Positives = 106/360 (29%), Gaps = 31/360 (8%) Query: 20 IGFAVTDGFDMGVGMLTRFLGRNDTERRIMI--NSIAPHWDGNQVWLITAGGALFAAWPM 77 +AV D G G + R + + I N ++P W V+L+ A A +P Sbjct: 16 FIYAVAGSIDFGTGFWAMYYSRQNHYKAATIANNFLSPAWKVTNVFLVLLVVAFVALFPG 75 Query: 78 VYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVA 137 + V LVL L R Y ++ M + P ++ Sbjct: 76 AAPTLGTLMIVPFCLVLLLLTIRSAFLVYAY--STKKYSRMLTLVSGLCGLFIPAILVSI 133 Query: 138 FGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELH 197 + G + + F + G+V+ I E Sbjct: 134 LPAAIGGFVVVAGDKQYILVNELFLSPAFYTHVGFGLVTQLFISALFMCDYAKEAGDEST 193 Query: 198 LRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLV 257 + + + FA+A ++ + P E W Sbjct: 194 ASSYRKNAIFLGPVTLVFAVAAIFTLI---------------PEAPWMFEKFLSLWHW-- 236 Query: 258 NFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPS 317 + ALG T+ + A + + + G A P+++ Sbjct: 237 ----YTLSLFAFALGYSALWWRSKTSHLGHPRAALLLIVVQFGLASIAYGSAHLPYLLYP 292 Query: 318 STMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHS 377 ++T++DA +++ + ++ + I++ + + F +++ +S Sbjct: 293 ------NVTIYDAFTNETMFRYLLIGFLIGLAILVPVFLYFWRLFFKDKAYLQSDQHDYS 346 >UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax=Erwinia chrysanthemi RepID=Q937L0_ERWCH Length = 121 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 85/121 (70%), Positives = 104/121 (85%) Query: 259 FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSS 318 FNN P+LWA+P LGVVLPL+T + AR +K A AF+FSSL++AC+ILTAGIAMFPF+MPS Sbjct: 1 FNNHPVLWAVPLLGVVLPLMTAVMARAEKGAMAFLFSSLSIACVILTAGIAMFPFIMPSV 60 Query: 319 TMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSL 378 T+ N SLT+WDATSS LTL VMT VA++ VPI+L YT WCY+KMFGRITKE +E+N+HSL Sbjct: 61 TVPNVSLTVWDATSSLLTLRVMTVVAIIFVPIVLSYTIWCYYKMFGRITKEHVEQNSHSL 120 Query: 379 Y 379 Y Sbjct: 121 Y 121 >UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YQX5_NOCDA Length = 307 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 110/292 (37%), Gaps = 19/292 (6%) Query: 21 GFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA 80 G+ V G D+G+GML L R +RR ++ +IAP++ ++VWL+ A G L +P + Sbjct: 15 GYLVLAGADIGLGMLMPRLARGPEQRRRVVAAIAPYFLASEVWLVAAVGVLAGLFPALEH 74 Query: 81 AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGN 140 A + + + ++LA R G R++++ RWR + D + GS+ G+ Sbjct: 75 HAVAELWPVLAVLLAGWLVRDAGLWLRARVDGERWRLVCDCALVGGSWALAAAWGLVVAG 134 Query: 141 LLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRT 200 LL G G P L V + +GA + R VG + Sbjct: 135 LLAG--------------GLTASAFTP---LCAVAVTALFALRGAAFGAERLVGPADSES 177 Query: 201 RATAQVAA--LVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVN 258 A L L A A V + G S A + L +V +G Sbjct: 178 ADVAARDTRPLARLALGAAALAAVAAVLPGGPDLSPGPAAALTAVLLAALVATSGLVGPM 237 Query: 259 FNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAM 310 + AI G+++ L A VF TL +I + Sbjct: 238 LSRHTSAAAIAVPGLLVALAAPELPSAPIPATTAVFVWATLVPVIPVMFVGQ 289 >UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 Tax=Bacillus RepID=A0RL15_BACAH Length = 364 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 116/346 (33%), Gaps = 33/346 (9%) Query: 20 IGFAVTDGFDMGVGMLTRFLGRNDTERRIMIN-SIAPHWDGNQVWLITAGGALFAAWPMV 78 +++ D G G ++ T + N ++P W+ +L+ A +P Sbjct: 39 FVYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTFLVFVVVAFLGFFPKA 98 Query: 79 YAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAF 138 + +V ++L+L + R + + +++++ I + P ++ + Sbjct: 99 AFTLATVMFVPVMLILVLVAIRSTFMVFAYSL--PKYQHLLRIISGITGLLIPALL-ITV 155 Query: 139 GNLLQGVPFNVDEYLRLYYTGNFFQLLNPFG-LLAGVVS-VGMIITQGATYLQMRTVGEL 196 + +G + E + G + +L G+ S + + A + + + + Sbjct: 156 LPVTEGAYITMSEGKEVLLYGKLLSSPVIYCYMLFGLTSELFLSSLFLADFAREQGSEDA 215 Query: 197 HLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWL 256 + R A + TLV +A V + + + + V+ + W Sbjct: 216 YKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFPWFTVSIVLFVIGYSSLWW 275 Query: 257 VNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMP 316 N + + + A+ V+ A G+A P+++ Sbjct: 276 TNKKYSTLGFPRIAVLAVV---------------------AQYAFASYAYGVAHLPYIIY 314 Query: 317 SSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 +T++ + ++ T + + + + I+L + + Sbjct: 315 P------DVTVFTSFTTVETFYALLILYAIGIAILLPGFIFFWNLF 354 >UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacillaceae RepID=B1HTX5_LYSSC Length = 341 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 109/343 (31%), Gaps = 38/343 (11%) Query: 6 VLRFIWWLLVGVLLIGFAVTDGFDMGVGML---TRFLGRNDTERRIMINSIAPHWDGNQV 62 L + ++ + L G+ + D G G + +G+N I+ ++P W+ V Sbjct: 2 TLEILGISVLWIFLFGYVIVASIDFGAGFFNAYSLLIGKNHILTNIIKRYLSPVWEVTNV 61 Query: 63 WLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWG 122 +L+ + +P + + + + L L R + + S TR + Sbjct: 62 FLVFFFVGIVGFFPQTAFYYGTILLIPVSISLVLLAIRGSYYAFESYG--TRGHIGYTLT 119 Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 + + P + V F G V+ L Y + +PF V+S+ ++ Sbjct: 120 YGVAGLLIPASLSVVFAIAGGGYVDLVNGQPVLNYWTLYT---SPFAWSIVVLSIAAVLY 176 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 A +L + AL+ ++ + +MY + +S Sbjct: 177 ISAVFLTWYAHKANDKEATKLMRKYALLWAAPLMVSALGIMYEMKSINPESYGHMVN--- 233 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACI 302 + W ++ + +L A K A A Sbjct: 234 ---------------------LWWMFAISAILFMITVLLLALRKKYGLAVALLIAQFAVA 272 Query: 303 ILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAV 345 GIA +P+++ LT++D +S + + Sbjct: 273 FFAYGIAQYPYLLYPY------LTIYDGFTSTQMAIALIIAFI 309 >UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLF6_9FIRM Length = 305 Score = 98.9 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 23/267 (8%) Query: 17 VLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWP 76 L + + D GV ++ + +N+ ER+ +N + P DGN+ W G A + Sbjct: 14 FFLAIYLWLESQDFGVAIVAPMVAQNEEERKTALNLLKPGLDGNEAWAFLCAGVTGALFS 73 Query: 77 MVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGV 136 + + ++L + R W P L+ GV Sbjct: 74 NGRFNIPESTFWPLGIILTGMIVRLAA-------------AFWGNIFQQ----PLLLRGV 116 Query: 137 AFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGEL 196 F + NV L + L + + I GA Y +T L Sbjct: 117 RFITI-----INVISAGVLALELANWDLFTTKSVFGLIWLFMSCIQVGAIYGACKTANPL 171 Query: 197 HLRTRATAQVAALVTL-VCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAW 255 R RAT V +++L A+ G W + G + +S + + + Sbjct: 172 GERFRATFLVTNILSLMAFIAVFGAWYVLGNREIFGTDMLLSGFSSVVIISAIAFFSVRA 231 Query: 256 LVNFNNTPILWAIPALGVVLPLLTILT 282 + + + V + L T++ Sbjct: 232 RHVYAGMLLSYIAQWGAVCIYLFTMML 258 >UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit II n=1 Tax=Thermobifida fusca YX RepID=Q47RW4_THEFY Length = 304 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 113/307 (36%), Gaps = 19/307 (6%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66 + + +L+ VLL G+ V G D+G+GML + R+ ERR +I IAP++ G++VWL+ Sbjct: 1 MESVAVVLLLVLLGGYFVFAGSDIGLGMLLPYAARSPAERRRLIAVIAPYFLGSEVWLVA 60 Query: 67 AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126 G + P+ AA + + +L+LA+ R G R ++ RWR +WD + G Sbjct: 61 TIGVVAGLVPVWEAAVVTAQWPVFVLLLAAWLGRDAGLWLRGRLPAARWRAVWDGAVAAG 120 Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186 S++ + G LL G L + V + +GA Sbjct: 121 SWLLAVAWGFVVAALLGGGTLRPGVTLVCVA-----------------LVVLLFAVRGAA 163 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 + R + + AA V V V V + Sbjct: 164 FGAERLAAAEGVGGAEPGERAARAFRVLVRAGLVVVPVAAGVLWVSAGAAPAVVVAGAEV 223 Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLT--ILTARMDKAAWAFVFSSLTLACIIL 304 + A + + L VVL + A + V ++ L +++ Sbjct: 224 VLAAAAVDAGRGWARVLSALGMAVLPVVLAVGAELPAPAVERNSLLLLVAAAGPLVPVMV 283 Query: 305 TAGIAMF 311 + ++ Sbjct: 284 AGQVWLY 290 >UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1NY02_9ENTR Length = 156 Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 30/182 (16%) Query: 190 MRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVV 249 M+T G L + L+ L + VW P+ E + Sbjct: 1 MKTEGHLRKTMYRILRPLTLLMLAVIGVISVWT--------------------PMQSEAI 40 Query: 250 REAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMD-KAAWAFVFSSLTLACIILTAGI 308 + L N +P L + L I + + + F+ + + GI Sbjct: 41 YQRWFTLPNLF---FFLPVPLLVIGCVWLIIKSVKRQQHDSIPFLSALALIFLGFTGLGI 97 Query: 309 AMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITK 368 +++P ++P + DA +L M A+ ++P+IL+YT W Y+ G+IT Sbjct: 98 SIWPNLIPPAIN------FRDAAGPPESLGFMLVGALFIIPVILVYTYWSYYVFRGKITP 151 Query: 369 ED 370 E Sbjct: 152 EQ 153 >UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3SF07_TRIAD Length = 262 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 80/228 (35%), Gaps = 11/228 (4%) Query: 145 VPFNVDEYLRLYYTGNFFQLLNPFGLLAG--VVSVGMIITQGATYLQMRTVGELHLRTRA 202 + F + + + F F LAG + + + A +L+ +G + + Sbjct: 26 LAFGMGVVTGIPMSFQFGTNFGKFSELAGSVIGPLIGVEVMTAFFLEAAFIGVMIFGWKR 85 Query: 203 TAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNT 262 + L+ + L + I + + + +F+ Sbjct: 86 FSAKVHLIATILVVLGTHHSAFWILSLNSWMHTPDGISVIDGSIRIHDWLKIDSYDFSLL 145 Query: 263 PILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMN 322 + I G+ W+F+ S + GI+++P+++ Sbjct: 146 HYCFFIFGRGLAFEFRLKAMKSRWIWDWSFIVGS---YLATFSQGISLWPYIVVP----- 197 Query: 323 ASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKED 370 +T+WD+ + TL ++ + + +PI++ Y+ + Y+ ++ +D Sbjct: 198 -DITIWDSAAPPETLKFVSIIICISLPIVIGYSIFVYYLFKEKLLLKD 244 >UniRef50_O34505 Uncharacterized membrane protein ythB n=12 Tax=Bacillales RepID=YTHB_BACSU Length = 346 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 45/364 (12%), Positives = 103/364 (28%), Gaps = 32/364 (8%) Query: 2 IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTER--RIMINSIAPHWDG 59 ++ I ++ + +AV D G G + + + I ++P W+ Sbjct: 1 MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEV 60 Query: 60 NQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMW 119 V+++ ALF+ +P + + ++L L R + + R Sbjct: 61 TNVFIVAIVVALFSFFPGATFVLGTVLLIPGSMILLLLAIRSGFLVF---SNTAKERKTL 117 Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 + I F+ P ++ + G D L + F + ++S Sbjct: 118 RYISGISGFIIPAILILVLPVTHGGFIEKTDGIYNLNMSKIFSSPNAYSFIGFAILSTLF 177 Query: 180 IITQGATYLQMRTVGELHLRT-RATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHY 238 + + + R R +A + ++L+ V + + D Sbjct: 178 LSSLLLADFSNVAEEQDAYRAYRKSALITGPISLLFAVCIMVTMRNEANWLYSGMMNDFS 237 Query: 239 AASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298 V+ +L N + + K A V + Sbjct: 238 WIIASFITFVIAGIALFLPNKS--------------------FGQNIGKPRLALVAIGIQ 277 Query: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358 G A P+++ +T+ + T + +V I+ + Sbjct: 278 YFLASYAYGRAHLPYMIYP------DVTVMSGFTEPATFRALFATYIVAFIILFPGFFFF 331 Query: 359 YWKM 362 + Sbjct: 332 WKMF 335 >UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4U0_9AQUI Length = 98 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 M + L IW+LL G+ LIG+++TDGFD+G G+L F +++ R +N++ P WDG Sbjct: 3 MEMFTTLNGIWFLLAGIFLIGYSLTDGFDLGSGILHIF-AKDENTRITYMNAVGPVWDGM 61 Query: 61 QVWLITAGGALFAAWPMVYAAAFSGFYV 88 + L+ A F + F FY+ Sbjct: 62 KSGLLLEEYA-FRSLSCCVCCIFQCFYL 88 >UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Burkholderia phymatum STM815 RepID=B2JRW5_BURP8 Length = 234 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 227 DGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMD 286 D S + P +E + + + + + +L + Sbjct: 93 DARAPGSGEPMVLFAIPDMRERRNHYEVSIPRVASLYLRHNLSGVFALLAAGFVYAIVRR 152 Query: 287 KAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVV 346 +A VF+ + + +FPF +P S+T+ +S T + + V Sbjct: 153 RAFAPLVFALVWFVFALFCVLYTIFPFGLPP------SITIAQGSSPPRTQAFVLGGSSV 206 Query: 347 LVPIILLYTAWCYWKMFGRITKE 369 LVP +L+Y+ + +W G++T Sbjct: 207 LVPAVLVYSTFAFWVFRGKVTSA 229 >UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SHW9_XANOP Length = 85 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 44/62 (70%) Query: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 ++DY LR IWWLL+GVLL G+AV GFD+GVG L F+ ND ERR++IN++ P W Sbjct: 5 LLDYTTLRVIWWLLLGVLLSGYAVMSGFDLGVGALLPFVANNDAERRLVINTVGPVWRAQ 64 Query: 61 QV 62 V Sbjct: 65 HV 66 >UniRef50_C4L5A7 Cytochrome d ubiquinol oxidase subunit II n=83 Tax=Bacillales RepID=C4L5A7_EXISA Length = 343 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 95/322 (29%), Gaps = 31/322 (9%) Query: 7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLG---RNDTERRIMINSIAPHWDGNQVW 63 ++ + ++ L G+ + D G G + R+ R++ ++P W+ V+ Sbjct: 3 IQELGIAVLWTFLYGYLIVASIDFGAGFFAFYSRYTKRDHLVNRLVKRYLSPTWEVTNVF 62 Query: 64 LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGI 123 + + +P + V +VL L R + + + + ++ + Sbjct: 63 FVFFFVGIVGFFPDTAYYYGTALLVPASVVLILLAIRGSFYAFANYGSKES--TLYMFLY 120 Query: 124 FIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 + P + G + + F N + ++++ ++ Sbjct: 121 GATGLLIPASMSTVLTVSQGGFITETENGVFFDGAKLFT---NFYSWTVVILAIVSVLYI 177 Query: 184 GATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNP 243 A +L + AL V +A V +G+ Sbjct: 178 SAMFLLFYADKARDQNAVELVRKWALFWSVPTIIASGLVFFGLK---------------- 221 Query: 244 LNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACII 303 + A + +A+ L V+ + + AF+ Sbjct: 222 -----SQAAWHYESILGGNWWWFAMSFLFFVIAVSFVYM--KRNYGIAFLMVMGQFFMAW 274 Query: 304 LTAGIAMFPFVMPSSTMMNASL 325 G + P+++ +N S+ Sbjct: 275 FGYGYSHLPYILYPYIDINGSV 296 >UniRef50_Q8CPN5 Cytochrome d ubiquinol oxidase subunit II-like protein n=7 Tax=Staphylococcus RepID=Q8CPN5_STAES Length = 338 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 37/320 (11%), Positives = 93/320 (29%), Gaps = 31/320 (9%) Query: 8 RFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRI---MINSIAPHWDGNQVWL 64 +I ++ V L + + D G G E+++ + + P W+ V+ Sbjct: 4 AYIGITVLWVFLFCYIIIASIDFGSGFFALHSKMTGNEKKVNHLIHRYLNPVWEVTNVFF 63 Query: 65 ITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIF 124 + +P + V + L + R + + + ++T + W Sbjct: 64 VFFFVGFIGFFPDSAKYLGTVLLVPGSIALILISIRSSFYAFENYGQDT--KLPWIVLYG 121 Query: 125 IGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG 184 + + P + A G + ++ L + LL+PF +++ ++ Sbjct: 122 LTGLLIPASLATALTISEGGYIYEHGTHIDLDWIQL---LLSPFAWSVVFLAIVSVLYIS 178 Query: 185 ATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPL 244 + +L + + + ++V Sbjct: 179 SGFLTYYAHKANDQPAYDMTRQWHIFWGPPMIVISLFVFLS------------------- 219 Query: 245 NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL 304 +R + W + + +LT K AF+ L + Sbjct: 220 ----LRIQNSDHFRTAIFNYWWMFAISFIFFIIAGLLTIFKKKHGLAFIMVILQMLFAFF 275 Query: 305 TAGIAMFPFVMPSSTMMNAS 324 G++ P+++ + S Sbjct: 276 GYGMSKLPYLLYPFIKITDS 295 >UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1 Tax=Pseudomonas putida KT2440 RepID=Q88HL8_PSEPK Length = 89 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 261 NTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM 320 N +P L +V + + F+ + + GI+++P ++P Sbjct: 3 NLLWFMPVPILVLVTCYGLLRAVARNAHYTPFLLTLAQIFLGYSGLGISLWPNIIPP--- 59 Query: 321 MNASLTMWDATSSQLTLNVMTWVAVVLVPIILL 353 S+++W+A + + M + ++P L Sbjct: 60 ---SISIWEAAAPPQSQGFMLVGTLFILPSSLG 89 >UniRef50_UPI000191363F hypothetical protein Salmonellaentericaenterica_25409 n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI000191363F Length = 91 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 +F+GS + GV ++ G ++G+ L PF L GV V Sbjct: 13 LFVGSILATFAQGVVVSAVVSGFQV-----EGRTFSGSQLDWLTPFNLFCGVGLVVTYAL 67 Query: 183 QGATYLQMRTVGELHLRTRATAQV 206 GAT+L M++ LH R A ++ Sbjct: 68 LGATWLIMKSEDPLHSRMCALSRP 91 >UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q5N5_9ENTR Length = 81 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 298 TLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357 + + AM+P+++PS ++ + +S +T V+ V++ + L+Y W Sbjct: 5 LITSTLTGIIYAMYPWIIPSQVN------LYQSAASSVTQQVVLIGTAVMILLTLIYHIW 58 Query: 358 CYWKMFG 364 +W + G Sbjct: 59 PFWIIKG 65 >UniRef50_A7B8V6 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7B8V6_9ACTO Length = 1004 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 72/255 (28%), Gaps = 38/255 (14%) Query: 85 GFYVAMILVLASLFFRPVGFDYRSKIEETRWR------------------NMWDWGIFIG 126 G +V +V A+L F + + YR + TR + W +F G Sbjct: 52 GLFVVGFIVAAALIFFSMSYAYRHRASSTRGQASASLRAYQKALEPVRRLAFWGVALFFG 111 Query: 127 ---SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQ 183 L + VD L + F L L++ +++V I Sbjct: 112 FTNGARLATEWQTLLQFLNRSSFDQVDPQFGLDISFFVFVLPALKVLVSFLMTVTTIALI 171 Query: 184 GAT---YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 A YL A++ + + C +L Sbjct: 172 AALIVSYLYGTIRLAPRPHASKQARLQSGLMAACLSLFIAANY------------WLGRY 219 Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 + + P + + ++ +L ++ A ++T+ Sbjct: 220 ELLTSDSGSIHGAMYSDINATLPAHSILAVISGLVAVLFVVAAFKGTWRLPVTGVAVTVI 279 Query: 301 CIILTAGIAMFPFVM 315 ++ AG +P ++ Sbjct: 280 AALVLAGA--YPALV 292 >UniRef50_Q0F0Q7 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=Q0F0Q7_9PROT Length = 733 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 7/198 (3%) Query: 120 DWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 GI + S + ++ G L+ G P V L TG +NP LL+G++ M Sbjct: 165 GHGISMASLLAVILRGAFLSLLVFGGPLVVL-MGILSLTGLLHDGMNPTLLLSGLLLAVM 223 Query: 180 IITQGATYLQMRT----VGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTM 235 ++ Y +R+ + R A LV AL V + + ++ + Sbjct: 224 LVIN--IYFGIRSGKKRDSDSAYALRRQYDEYAGRLLVVTALLAVLGTIPLAAHYLQLQI 281 Query: 236 DHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFS 295 + V + + P+ P +L +L + + A A Sbjct: 282 SSSVTVAGIVSSVFAIMKSQGKDEGKIPLGLLGPVAATLLIYGILLVSYLGGVALAAAVV 341 Query: 296 SLTLACIILTAGIAMFPF 313 + A + + + P+ Sbjct: 342 KGSFAALFAVLLLTVIPY 359 >UniRef50_C4L753 Diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(S) n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L753_EXISA Length = 819 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 68/234 (29%), Gaps = 22/234 (9%) Query: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLL--NPFGLLAGVVSVGMIITQGAT 186 +P +++ +A GV ++ L+ + + F L G+ Sbjct: 22 LPLVILSIAVAIFAAGVALDISSRLKYAKHASRLGWVVAGAFSLGLGIW-----AMHFIG 76 Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246 L ++ + + + + Sbjct: 77 MLAFHLNDDVTYHLGIVLLSIVPAVVASGLAFWIISHPETRPIQLVFGAFLISVGVVSMH 136 Query: 247 EVVREAGAWLVNFNNTPILW-----AIPALGVVLPLLTILTARMDKAAWAFVFSSLTLAC 301 + EA P++W +V + + + W + SS+ + Sbjct: 137 YIGMEAMQMNAILTYDPVMWVASAIVAFVASLVGLYILFYIPNVSRFHWRRLASSVLIGV 196 Query: 302 II-----LTAGIAMFPFVM-----PSSTMMNASLTMWDATSSQLTLNVMTWVAV 345 + + G A F + S ++++L + +S +TL ++ ++++ Sbjct: 197 AVSGMHYVGMGAARFTPMEGAAKPVSDYAVDSTLLAYVIAASVMTLFILMYISL 250 >UniRef50_C8X0C6 Cytochrome c family protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0C6_DESRD Length = 897 Score = 44.6 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 93/316 (29%), Gaps = 59/316 (18%) Query: 17 VLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWP 76 L+ V G GVG+ + ++I++ W V+ + ALF Sbjct: 63 FFLLLTMVFGGLT-GVGIWFTISVLSPGATSVLIHNFLYGWATEWVFFVVEIVALF---- 117 Query: 77 MVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVI-G 135 VY F + + W F ++ +I G Sbjct: 118 -VYFYTFGKM-------------------------DQQRHLTVGWIYFGAAWASLFLING 151 Query: 136 VAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGE 195 + L G + ++ F+ L F +V G+ AT+++ + Sbjct: 152 IIAFMLTPGEWLQTGNFWHGFFNPTFWSSLV-FRTFMAIVLAGVFGFVTATFMKDQQA-- 208 Query: 196 LHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAW 255 + LV +V +G W + + + +D P K Sbjct: 209 -RAQLIRYNARWLLVPMVFLVASGWWYLQSVPEPARELILDRSPELVPYFKA-------- 259 Query: 256 LVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAG-----IAM 310 LW A+ + LLT R + AFV + LA + + Sbjct: 260 --------FLWLSGAVFLGGLLLTARGGRRWQRPLAFVL--MALALGYMGSFEYIREAGR 309 Query: 311 FPFVMPSSTMMNASLT 326 P+++ N LT Sbjct: 310 HPYLIYDYMYSNGILT 325 >UniRef50_D1KCB4 Thiol:disulfide interchange protein n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KCB4_9GAMM Length = 744 Score = 43.0 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 58/229 (25%), Gaps = 13/229 (5%) Query: 68 GGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI-- 125 G L + F ILV+ SL F + F E ++ I Sbjct: 391 AGVLAGYFGENLQVLFQ---TPWILVVFSLVFVALAFSMFGYYEIQLPASLQGKIANISN 447 Query: 126 ---GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 G + + I L+ G L Y G LL GV M + Sbjct: 448 KQEGGHLISVAIMGFLSALIVGPCVAPPLAGALIYIGQTGD-----ALLGGVSLFVMSLG 502 Query: 183 QGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASN 242 GA L + + + + +W++ I VV + S Sbjct: 503 MGAPLLAIGAGVSKLPKAGGWMDNVKYIFGILMLAVAIWLLDRIISPVVSLALWATLFSF 562 Query: 243 PLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWA 291 V + + LL L AR A Sbjct: 563 SPIAMGVLNSLTNTPTPWQRIFKAIGLLVLAYGILLWGLVARGGGDMLA 611 >UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B0F2_9RHOB Length = 61 Score = 42.6 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365 + + + +P LT+++A S +L + + +P IL YT Y+ G+ Sbjct: 1 MAYSFYTYAVP------EKLTIFEAASVPESLFINLLGTLFALPAILEYTFLSYYIFRGK 54 >UniRef50_C2BRT8 Possible PTS system, glucose-specific IIBC component n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRT8_9ACTO Length = 747 Score = 41.5 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 76/282 (26%), Gaps = 31/282 (10%) Query: 89 AMILVLASLFFRPVGFDYRSKIEETRWRNMWDW-----GIFIGSFVPPLVIGVAFGNLLQ 143 M +L ++R + R + G V +++GV + L Sbjct: 194 LMGGILVGFLVAGCWSEFRFRKIAPWARMVSGIPLVVMISATGGVVLGILVGVCYQLLYL 253 Query: 144 GVPFNVDEYLRLY---YTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRT 200 + V + + LL+PF +AG S+ + T G+ + Sbjct: 254 LIAVAVGTAMVSTPGPLGAAIYGLLHPFAEVAGFSSLLNVAPFNLYGRCQTTQGDTLNGS 313 Query: 201 RATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFN 260 AL Y + + + + + W + + Sbjct: 314 YRCFVYGGTQMEGQQALFLA-GGYPVVAFGLAALFLVLWLQLKGSNRQYWRIMYWFLIAS 372 Query: 261 NTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM 320 + PAL +L + A AF ++ + + + P Sbjct: 373 TFVVGADKPAL-YLLFFAAPGLLLVHAGASAFAYALTAVFGVTIGWAGG------PGMLD 425 Query: 321 MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKM 362 + L M A +LV +IL + M Sbjct: 426 L---------------LRWMGTGAGILVLLILGVIYAAIYVM 452 >UniRef50_D2V2C7 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V2C7_NAEGR Length = 503 Score = 41.1 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 12/203 (5%) Query: 124 FIGSFVPPLVIGVAFGNLL--QGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181 IGS + ++ GV + + + + +++ +F L L+G++++ + Sbjct: 191 SIGSVLVAIIFGVIAALIFKYGALRHSPKLEMSIFFVLAYFSYLVSLPYLSGIMTILISG 250 Query: 182 TQGATY----LQMRTVGELHLRTRATAQVA--ALVTLVCFALAGV----WVMYGIDGYVV 231 + Y L ++ L + + A + V FAL W + I ++ Sbjct: 251 VLMSHYSVPNLSEQSSNALLSTSNSLAMICETFTFLYVGFALFAFDNNKWHIPLICFTIL 310 Query: 232 KSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWA 291 + + PL+ + + + +A + L L + + Sbjct: 311 LCLLGRFLNIVPLSGILNMYRTGKISFKFQFVMWFAGLRGAIAFALSMQLKSHGGNGEYI 370 Query: 292 FVFSSLTLACIILTAGIAMFPFV 314 F + T+ IL G FP + Sbjct: 371 FTTTLATVFFTILVLGGGTFPLL 393 >UniRef50_C0ZT41 Conserved hypothetical membrane protein n=3 Tax=Rhodococcus RepID=C0ZT41_RHOE4 Length = 499 Score = 41.1 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 80/280 (28%), Gaps = 28/280 (10%) Query: 63 WLITAGGALFAAWPMV---YAAAFSGFYV--AMILVLASLFFRPVGFDYRSKIEETRWRN 117 WL+ A +FA WP + + SG + L L L VG D R E Sbjct: 31 WLMIALATIFAFWPTWTKLWQSTASGTAIGYVFALPLLCLVA-AVGTDLRRGPELPIHDR 89 Query: 118 MWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSV 177 D + L + E L + + + + + Sbjct: 90 ETDKIVGCIGLFVALGLQALLLP-------RFAETYELMHIDVIAAWVFVWSAAVLMFGL 142 Query: 178 GMIITQGATYLQMRTVGELHLRTRATAQVAALV--TLVCFALAGVWVMYGIDGYVVKSTM 235 + A ++ + LH R AT +++ +A + + + Sbjct: 143 RPVNRYWAIWVVPVILAPLHYRAIATEMGGTRFDYSVLMVLVASAATTIAVSRTWRRGAI 202 Query: 236 DHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAF--- 292 AA+ + + L+ +V+ L R K+ F Sbjct: 203 AFVAATVLGVVVLYVTIQKYPTAPLFAVQLFPALGTAIVVGGAFYLYERRGKSLKPFDRP 262 Query: 293 -----VFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTM 327 +S + A + MF +P + SLT+ Sbjct: 263 LRKPSTATSNWTILAVFAAAVLMFFTPLPPT-----SLTV 297 >UniRef50_C0WEZ0 Membrane-spanning protein n=4 Tax=Actinomycetales RepID=C0WEZ0_9CORY Length = 666 Score = 41.1 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 77/261 (29%), Gaps = 24/261 (9%) Query: 59 GNQVW-------LITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIE 111 GNQ W L++ G + +P+ + ++ + L ++ RP R K Sbjct: 350 GNQTWWLKEVFNLLSLIGGIAMLFPLTRMLLRTRYFAPVAQALPTVPKRP-----RGKEA 404 Query: 112 ETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRL-YYTGNFFQLLNPFGL 170 W F+ S + NL Q V ++ + ++ + + + Sbjct: 405 AKFW------AFFVLSAAIAFFTFMPLANLSQDVFYDAANKVSTWFFPARMVNSVVLWAI 458 Query: 171 LAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYV 230 + G+V + + + ++ R RA + T L +++ + Sbjct: 459 VNGIVGLILFYI-----TRDKSTYARGERARAWGITMSWRTFWRTILLAFILLFVYFSVL 513 Query: 231 VKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAW 290 + ++ L W + I L + Sbjct: 514 SIVYLAFHSDYRFLVVASRPLTLRWFLVALMYVPAMFIFYLANSIRAGVGTRYSDTPKWQ 573 Query: 291 AFVFSSLTLACIILTAGIAMF 311 ++ ++L + + + + Sbjct: 574 TYLIAALANSVGLAMIFVIQY 594 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.317 0.144 0.427 Lambda K H 0.267 0.0441 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,415,023,722 Number of Sequences: 3077464 Number of extensions: 118906787 Number of successful extensions: 751787 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 533 Number of HSP's successfully gapped in prelim test: 9537 Number of HSP's that attempted gapping in prelim test: 738142 Number of HSP's gapped (non-prelim): 20664 length of query: 379 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 249 effective length of database: 640,326,036 effective search space: 159441182964 effective search space used: 159441182964 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.1 bits) S2: 94 (40.7 bits)