BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (289 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Ta... 592 e-168 UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Ga... 293 3e-78 UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID... 249 8e-65 UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=... 247 3e-64 UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n... 230 5e-59 UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator ... 216 9e-55 UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putativ... 215 1e-54 UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=P... 211 2e-53 UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=... 210 4e-53 UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseria... 210 5e-53 UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=B... 204 3e-51 UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=... 197 3e-49 UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=B... 197 5e-49 UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=O... 194 2e-48 UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma p... 192 1e-47 UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family pr... 177 3e-43 UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=C... 172 2e-41 UniRef50_D2TXX6 Hex regulon repressor (RpiR-family transcription... 171 3e-41 UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=M... 168 2e-40 UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family ... 159 1e-37 UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteoba... 158 2e-37 UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales Re... 156 1e-36 UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=B... 154 4e-36 UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=D... 153 9e-36 UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejue... 152 1e-35 UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostri... 151 3e-35 UniRef50_A5VV40 Transcriptional regulator, RpiR family n=37 Tax=... 150 4e-35 UniRef50_UPI0000D541FA probable transcriptional regulator n=1 Ta... 149 9e-35 UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteracea... 147 3e-34 UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia... 147 4e-34 UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=A... 147 4e-34 UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=B... 147 5e-34 UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus ... 145 1e-33 UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulat... 145 1e-33 UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=R... 145 1e-33 UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=T... 144 2e-33 UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n... 144 3e-33 UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes Rep... 144 4e-33 UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=C... 144 5e-33 UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=R... 142 9e-33 UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 Re... 142 1e-32 UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=T... 141 3e-32 UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=R... 141 3e-32 UniRef50_Q89XK4 Transcriptional regulatory protein n=1 Tax=Brady... 140 4e-32 UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=R... 140 5e-32 UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=R... 140 7e-32 UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Cl... 140 7e-32 UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n... 139 2e-31 UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=P... 138 2e-31 UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator... 137 4e-31 UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus pl... 134 4e-30 UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=A... 133 6e-30 UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus ... 133 9e-30 UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family ... 132 2e-29 UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttle... 130 4e-29 UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=... 130 4e-29 UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Sta... 130 5e-29 UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Se... 130 5e-29 UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Ba... 130 6e-29 UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus ... 130 6e-29 UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=C... 130 7e-29 UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=B... 129 8e-29 UniRef50_A6DTP0 Putative transcriptional regulator, rpiR family ... 129 1e-28 UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oen... 128 2e-28 UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=A... 128 3e-28 UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=L... 127 3e-28 UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax... 127 6e-28 UniRef50_P26833 Uncharacterized HTH-type transcriptional regulat... 126 7e-28 UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=F... 126 8e-28 UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopo... 125 1e-27 UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, ... 125 2e-27 UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=P... 125 2e-27 UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=P... 124 3e-27 UniRef50_A4CAD1 Transcriptional regulator n=1 Tax=Pseudoalteromo... 124 3e-27 UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Ac... 124 3e-27 UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostri... 124 3e-27 UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=G... 124 3e-27 UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=B... 123 9e-27 UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment)... 122 2e-26 UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostri... 121 3e-26 UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=B... 120 4e-26 UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus ... 120 5e-26 UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacte... 120 5e-26 UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp... 120 6e-26 UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulat... 120 7e-26 UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulat... 119 8e-26 UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=B... 119 9e-26 UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillac... 119 1e-25 UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=A... 119 1e-25 UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=... 118 2e-25 UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulat... 118 3e-25 UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR... 118 3e-25 UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=B... 118 3e-25 UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=C... 117 3e-25 UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional... 117 4e-25 UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor... 117 4e-25 UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=T... 117 5e-25 UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Er... 117 6e-25 UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=L... 116 1e-24 UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=B... 115 2e-24 UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_... 115 2e-24 UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=... 115 2e-24 UniRef50_Q21ZX8 Transcriptional regulator, RpiR family n=4 Tax=C... 115 2e-24 UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=K... 114 3e-24 UniRef50_B9K581 Transcriptional repressor of rpiB expression; tr... 114 4e-24 UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=... 114 5e-24 UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulat... 114 6e-24 UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulat... 113 6e-24 UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulat... 113 1e-23 UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=P... 112 1e-23 UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium ... 112 2e-23 UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus la... 111 2e-23 UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostri... 111 3e-23 UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=H... 111 3e-23 UniRef50_P44540 Uncharacterized HTH-type transcriptional regulat... 110 5e-23 UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=G... 110 5e-23 UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=A... 110 6e-23 UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=... 110 7e-23 UniRef50_B9B6B2 Transcriptional regulator, RpiR family n=3 Tax=B... 109 1e-22 UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=E... 108 2e-22 UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=B... 108 3e-22 UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales ... 107 4e-22 UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID... 107 4e-22 UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATC... 107 4e-22 UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=... 107 6e-22 UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=At... 107 6e-22 UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=A... 106 7e-22 UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=La... 106 7e-22 UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=E... 106 8e-22 UniRef50_C7TGD6 Transcriptional regulator, RpiR family n=3 Tax=L... 106 9e-22 UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonel... 106 9e-22 UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=B... 106 9e-22 UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=... 106 1e-21 UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=P... 105 1e-21 UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostri... 105 1e-21 UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=K... 105 2e-21 UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocace... 105 2e-21 UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales ... 105 2e-21 UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus ... 104 3e-21 UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteri... 104 3e-21 UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Provide... 103 7e-21 UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostri... 103 8e-21 UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostri... 103 9e-21 UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1... 103 1e-20 UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=F... 102 1e-20 UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=P... 101 3e-20 UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enteroco... 101 3e-20 UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus pl... 101 3e-20 UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collins... 101 3e-20 UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=L... 101 4e-20 UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=F... 100 4e-20 UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n... 100 6e-20 UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteoba... 100 7e-20 UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteri... 100 7e-20 UniRef50_Q2J952 Transcriptional regulator, RpiR family n=3 Tax=F... 99 1e-19 UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecali... 99 2e-19 UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=F... 99 2e-19 UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=C... 98 4e-19 UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n... 98 4e-19 UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hy... 97 5e-19 UniRef50_B7IEI4 Transcriptional regulator, RpiR family n=1 Tax=T... 97 6e-19 UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collins... 97 8e-19 UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=F... 97 8e-19 UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=S... 97 9e-19 UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. ... 97 9e-19 UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=D... 97 9e-19 UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostri... 96 1e-18 UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n... 96 1e-18 UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax... 96 2e-18 UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, ... 96 2e-18 UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=B... 95 3e-18 UniRef50_P46117 Uncharacterized HTH-type transcriptional regulat... 95 3e-18 UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=At... 95 3e-18 UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=G... 94 4e-18 UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=P... 94 4e-18 UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acid... 94 4e-18 UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostri... 94 5e-18 UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp... 94 5e-18 UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus ... 94 5e-18 UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus... 94 6e-18 UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus si... 94 6e-18 UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus ... 94 7e-18 UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax... 94 8e-18 UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales ... 93 8e-18 UniRef50_C7T7Y4 Transcriptional regulator n=8 Tax=Lactobacillus ... 93 8e-18 UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n... 93 9e-18 UniRef50_B5RKH7 Transcriptional regulator, RpiR family n=2 Tax=P... 93 1e-17 UniRef50_Q184N2 Putative phosphosugar-binding transcriptional re... 93 1e-17 UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteri... 93 1e-17 UniRef50_Q041H9 Transcriptional regulator n=22 Tax=Lactobacillus... 93 1e-17 UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillale... 93 1e-17 UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteur... 92 2e-17 UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostri... 92 2e-17 UniRef50_C0DAS9 Putative uncharacterized protein n=1 Tax=Clostri... 92 2e-17 UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonel... 92 2e-17 UniRef50_C8STB5 Transcriptional regulator, RpiR family n=1 Tax=M... 92 2e-17 UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=A... 92 2e-17 UniRef50_A8F3C1 Transcriptional regulator, RpiR family n=7 Tax=T... 91 3e-17 UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax... 91 4e-17 UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, ... 91 6e-17 UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=S... 91 7e-17 UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n... 90 7e-17 UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus ... 90 8e-17 UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=P... 90 1e-16 UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macroco... 89 1e-16 UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillu... 89 2e-16 UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostri... 89 3e-16 UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enteroba... 88 4e-16 UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=S... 87 5e-16 UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Ba... 87 5e-16 UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=A... 87 6e-16 UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n... 87 6e-16 UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=... 87 6e-16 UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collins... 87 7e-16 UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=... 87 7e-16 UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostri... 87 7e-16 UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n... 87 8e-16 UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax... 87 8e-16 UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=K... 87 9e-16 UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=S... 86 1e-15 UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostri... 86 2e-15 UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=C... 86 2e-15 UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium bu... 85 2e-15 UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=B... 85 2e-15 UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=P... 85 2e-15 UniRef50_UPI0001BC57B3 oxygen-independent coproporphyrinogen III... 85 2e-15 UniRef50_C0C1I3 Putative uncharacterized protein n=1 Tax=Clostri... 85 3e-15 UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=A... 84 4e-15 UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator... 84 5e-15 UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=L... 84 5e-15 UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=A... 84 6e-15 UniRef50_D2AR91 Putative transcriptional regulator, RpiR family ... 84 6e-15 UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax... 84 7e-15 UniRef50_UPI000196B715 hypothetical protein CATMIT_00151 n=1 Tax... 83 8e-15 UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=S... 83 1e-14 UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pe... 82 2e-14 UniRef50_C9Q9L7 Helix-turn-helix protein RpiR n=6 Tax=Vibrio Rep... 82 2e-14 UniRef50_B0NFU9 Putative uncharacterized protein n=2 Tax=Clostri... 82 2e-14 UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=E... 82 2e-14 UniRef50_B7GSI0 Transcriptional regulator, RpiR family n=1 Tax=B... 82 2e-14 UniRef50_C3RI81 Sugar isomerase n=1 Tax=Mollicutes bacterium D7 ... 82 2e-14 UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU 82 3e-14 UniRef50_B0PG82 Putative uncharacterized protein n=1 Tax=Anaerot... 82 3e-14 UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus ... 82 3e-14 UniRef50_C0X0S9 RpiR family transcriptional regulator n=22 Tax=E... 82 3e-14 UniRef50_C4F999 Putative uncharacterized protein n=1 Tax=Collins... 82 3e-14 UniRef50_A8GCW7 Transcriptional regulator, RpiR family n=1 Tax=S... 82 3e-14 UniRef50_UPI0001C316A3 transcriptional regulator, RpiR family n=... 82 3e-14 UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium ... 82 3e-14 UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rh... 81 3e-14 >UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Tax=Gammaproteobacteria RepID=HEXR_ECOLI Length = 289 Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT Sbjct: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR Sbjct: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV Sbjct: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR Sbjct: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR 289 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR Sbjct: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR 289 >UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Gammaproteobacteria RepID=B8KWX3_9GAMM Length = 337 Score = 293 bits (751), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 146/278 (52%), Positives = 196/278 (70%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N+LE I L L+KSE KVA+ IL+ PD A SIA++A A VSEP+VNRFC+ Sbjct: 51 INLLEDINQSLPGLNKSEVKVAQAILSDPDAATRMSIASLASRAGVSEPSVNRFCKRFGA 110 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GFPDFKL LA S+ +G Y++R V D +++Y GK+F++A++ L + L I R Sbjct: 111 SGFPDFKLRLATSMVSGVRYISRAVEFSDDIDTYPGKLFDNAISALVAAKEQLPTGDIAR 170 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVD L QA++I FFGLG+SAAV DA +KFFRFNVPV D ++QRM S GDV Sbjct: 171 AVDFLAQARRIHFFGLGTSAAVTKDAEHKFFRFNVPVTNHQDPLMQRMLAAAGSVGDVFF 230 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +ISHTGRT+ LVE+A+LAR+ +A V++LT+ +PLA+E+ AITL + E+T+ Y+PM SR Sbjct: 231 IISHTGRTRALVEVAELARQTEATVVSLTAPQSPLAQESDCAITLTIGENTEEYLPMTSR 290 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L QL VIDVLATG TLRRG +F +L R+K++LK +R Sbjct: 291 LVQLAVIDVLATGVTLRRGERFLPHLARIKDSLKATRL 328 >UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID=A0Z4E2_9GAMM Length = 291 Score = 249 bits (636), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 128/277 (46%), Positives = 185/277 (66%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +IQ+ L LSKS+ K+A V+LA P+ A H+SIA +A +ANVSEP+VNRFC+ + Sbjct: 6 NVLTQIQAALPGLSKSDTKIAHVVLADPEAATHASIALLAQQANVSEPSVNRFCKRLGAT 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+PDFK+ LA+SL G Y+++ V+ +D+V +Y GK+ ++ + L R L + A Sbjct: 66 GYPDFKIWLARSLVAGVRYISQVVDPEDTVTTYPGKLVDNTVNALLLAREQLPLKTLEVA 125 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ L A +I FFG+G+SAAVA DA +KFFRF PV D ++ RM S GDV V Sbjct: 126 VEHLDAAGRIYFFGMGTSAAVAQDAEHKFFRFQTPVTTHTDPLMLRMLAAGGSQGDVFVF 185 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISHTGRT+ +V+ A LA + A VI+LT+ +PLA+ + I L+ PE+T+ Y+PM SR+ Sbjct: 186 ISHTGRTEAIVDAAALASASGATVISLTAQDSPLAQVSHCVIGLEAPENTEDYLPMTSRI 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L +ID+L TG TL+RG ++L R+KE+L +R Sbjct: 246 VHLVIIDILVTGVTLKRGEPCIEHLARIKESLLPTRL 282 >UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=cellular organisms RepID=Q1QSE2_CHRSD Length = 289 Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 127/276 (46%), Positives = 174/276 (63%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + ++++ ++EH +SE+KVA +L P++ IH I +A EA VSEPTV RFCR++ G Sbjct: 5 LFDEMRRRMEHFRRSEQKVARFVLRHPEDVIHMRIVDLATEAKVSEPTVVRFCRALGCNG 64 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F DFKL LAQ LA G+ + ++N+ DSV + IF+S + TL VR LD +A+ +AV Sbjct: 65 FQDFKLKLAQMLATGSQFAQFSMNDSDSVAEFAHNIFDSTVGTLLSVRDRLDHAALGKAV 124 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L A ++ F+G G+S AVA DA +KFFR + D +Q MS + + DVVV I Sbjct: 125 TALAMANRVEFYGFGASGAVAFDAQHKFFRLQISTAAYTDPHMQNMSAVTLTPRDVVVAI 184 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S TGRT+ LV +LARE A VI L + +PLA E TL + +DV EDT+IY PM SR+A Sbjct: 185 SQTGRTRALVASVRLARETGATVIGLCPSDSPLASEVTLPLYIDVHEDTEIYTPMSSRVA 244 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L +IDVLA G RG K + LK VK++L RF Sbjct: 245 HLVIIDVLAVGVAKTRGPKLAEQLKSVKKSLVPLRF 280 >UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYI4_9GAMM Length = 278 Score = 230 bits (586), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 116/277 (41%), Positives = 170/277 (61%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L + L SKS K+A ++A+P+ + S+ A++A +A VSEPTVNRFC + Sbjct: 1 MTLLTDLADPLSKRSKSAHKIAACVVANPEAILASTTASLAAQAGVSEPTVNRFCTGLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GFPDFKL LA LA P + R+++ DDS KIFES A+L + + LD +A+ Sbjct: 61 KGFPDFKLSLAAELARKQPRMTRDIDPDDSAAKVAAKIFESTQASLSNTQDHLDLAALQD 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V ++ A+ IA GLG+SA+VA DA +K RF +P++ DI+ QR+ D+++ Sbjct: 121 VVAAMSNARSIALCGLGASASVALDAQHKLLRFPIPIMAHTDIINQRVVAAGLGADDLLI 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS+TGRT ++ELA+LA V +TS +PLA L + ++ EDTD Y PM SR Sbjct: 181 CISYTGRTTAMIELAELAVSRGCQVAGITSPHSPLANTCPLVLGVESGEDTDRYTPMTSR 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL +ID+LAT L +G F D+L+ VK L ++R Sbjct: 241 IAQLVIIDILATCLALEQGEAFADHLQEVKRNLSQTR 277 >UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator n=24 Tax=Neisseria RepID=A9M040_NEIM0 Length = 282 Score = 216 bits (549), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 117/278 (42%), Positives = 171/278 (61%), Gaps = 1/278 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML KI L +LS +ERKVAE LA P +H+++A +A A+VS+PTV RFCRS+ +G Sbjct: 1 MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKG 60 Query: 63 FPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 P+FKL L+ S+ + G PYV+ +N DD + S K+ +A A+L R L +S + A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A+++ F+G+G+S VA DA +KFFRF + V D Q M+ SD DV+V Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG + L++ +A+EN A VIALT +PLA+ A +++ E+ ++Y PMVSRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLADCVLSVATQENAELYTPMVSRL 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 QL VID+LA G LR G L++ K+++ D Sbjct: 241 LQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKHID 278 >UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ITC5_RHOCS Length = 280 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 112/282 (39%), Positives = 169/282 (59%), Gaps = 3/282 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I+S L +SE+K+A+++L P +++S+A +A +A+VS+PTV RFCRS+ G Sbjct: 1 MLDRIRSMRPGLRRSEQKIADIVLRQPHAVVNASVAELAHDADVSQPTVVRFCRSIGCSG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + DFKL LAQ LA G V DD V K+ ++ L +R+ L+ A+ AV Sbjct: 61 YQDFKLRLAQDLAAGPARPEDAVRPDDPVAEIAAKLLNRSIGALTRLRNQLNPDALEAAV 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +LT+ +++ +G G+S VA DA NKFFR +PVV D +Q M+ V + + Sbjct: 121 QVLTETRRLDCYGFGASGVVALDAQNKFFRLGLPVVAHTDSHVQAMAAALLGPQGVALAV 180 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S +GRT+ L+ LA A VIA+T+ G+PLA AT+ + +D PED+ Y PM SR+A Sbjct: 181 SRSGRTRELLRSVDLALAGGARVIAITAGGSPLAGRATVPLLVDAPEDSSPYTPMTSRIA 240 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 L V+D+L LRRG D L+R AL++ D+QL++ Sbjct: 241 HLAVVDILQVATALRRGVHTGDPLRRPAAALRD---DRQLVS 279 >UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=A6UCC0_SINMW Length = 296 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/280 (41%), Positives = 167/280 (59%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+LE I+ + L KS+RKVAE++LA P I+++IA A A VS+PTV RFC S+ + Sbjct: 16 NILEVIRLRRADLRKSDRKVAELVLADPKRVINATIAEAAEWAGVSQPTVIRFCASIGCQ 75 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DFKL LAQSLA G + ++ D+ + KIF+ + +LD VR+ LD ++RA Sbjct: 76 GYQDFKLRLAQSLALGMSATHSVIDASDTPAQVSAKIFDYTITSLDWVRNHLDPVQVSRA 135 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D L++A +I FFG G+S VA DA KF F VP D Q M GDV V+ Sbjct: 136 IDALSKASRIEFFGFGASGIVARDAQQKFPLFGVPCGAETDAHQQIMVVSMLKPGDVAVV 195 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG T ++E A+ ARE+ VI + + PL + + ++ E+T+IY P +SR+ Sbjct: 196 ISNTGATLAIIETARRARESGCQVIGIVGSDGPLVEFCDIVLMVETLENTNIYTPTISRI 255 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 A LTVID+L+T LRRGA+ D +K L+ R + Sbjct: 256 AALTVIDILSTSVALRRGAEHVDLFTGMKRNLRYLRMSNE 295 >UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=Burkholderiaceae RepID=Q3JNN8_BURP1 Length = 339 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 112/278 (40%), Positives = 170/278 (61%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ML +I++ L SERK+A+ +LA+P + S+ +A A S+PT+ RFC+++ Sbjct: 7 TMLPRIETIRAQLRPSERKLADFVLAAPREVLDLSMTELAARAGASQPTIARFCQALGCS 66 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +FK+ LAQS+A G V R+V D+ GK+F+ + L VR+SL +++ A Sbjct: 67 GFREFKIRLAQSVAPGVASVYRDVEPDERAPGIIGKVFDRTIGALIEVRNSLSATSVAEA 126 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVP-VVYSDDIVLQRMSCMNCSDGDVVV 180 ++LLT+A +I F+G G S A D +KFFR VP V YSD MS DVVV Sbjct: 127 IELLTRASRIEFYGAGGSGIAAQDIQHKFFRLGVPSVAYSDPHTFS-MSAALLGANDVVV 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS+TGRT+++V+ A+ A A VI++T + +PLA+ +T+++ +V E+TD++ PM SR Sbjct: 186 AISNTGRTRDIVDAARAALACGAKVISITHSHSPLAQLSTVSLASNVAEETDVFSPMTSR 245 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 ++ L + D+LA G LRRG + D L R KEA+ R Sbjct: 246 MSHLAIGDILAVGVALRRGPELVDRLGRAKEAITRRRI 283 >UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseriaceae RepID=D0W145_NEICI Length = 315 Score = 210 bits (534), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 113/271 (41%), Positives = 167/271 (61%), Gaps = 1/271 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML KI L LS +ERKVAE LA P +H+++A +A ++VS+PTV RFCRS+ +G Sbjct: 1 MLSKISESLADLSGAERKVAECALAKPKWFVHAAVAEIAEHSSVSQPTVIRFCRSLGYKG 60 Query: 63 FPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 P+FKL L+ S+ + G PYV+ +N DD + S K+ +A A+L R L +S + A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMSSVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A+++ F+G+G+S VA DA +KFFRF + V D Q M+ S DV++ Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSSEDVLIA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG + L++ +A+EN A +IALT +PLA+ A +++ E+ ++Y PMVSRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASIIALTRNESPLAQMADCVLSIATQENAELYTPMVSRL 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 QL VID+LA G LR G L++ K+A Sbjct: 241 LQLAVIDILAIGLALRLGDAASLQLQKSKKA 271 >UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=Burkholderiaceae RepID=Q1LPJ6_RALME Length = 338 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 110/277 (39%), Positives = 164/277 (59%), Gaps = 2/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 M ++I + + L SER++A+ + + I ++ +A A VS+PT+ RFC ++ G Sbjct: 1 MRDRILAVYDSLRPSERRLADYVARHGASVIRLTMPELADRAGVSQPTIARFCAALGYDG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F +FKL AQ++ GTP+V+++V DD GK+F+ +ATL VR++L I + Sbjct: 61 FKEFKLQFAQNVGGGTPFVHQDVEADDRPADIAGKVFDRTIATLMSVRNALSADQIEHGI 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVV-YSDDIVLQRMSCMNCSDGDVVVL 181 LL A++I F+G G+S VA D +KFFR +P YSD V MS GDV VL Sbjct: 121 RLLAGARRIEFYGCGNSGIVALDIQHKFFRLGIPTTAYSDPHVFS-MSAALLRPGDVAVL 179 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 +S++GRT +++ A LAR + A V+ALT +G+PLAR A + + DV ED+++Y PM SR+ Sbjct: 180 VSNSGRTWDMLTAATLARSSGASVLALTHSGSPLARLADVCVFSDVEEDSEVYTPMTSRI 239 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L + DVLA G L R L+R K L+E R Sbjct: 240 CHLVLGDVLAAGVALDRADSVAAGLQRAKAHLRERRI 276 >UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=cellular organisms RepID=A9BXM8_DELAS Length = 323 Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 167/280 (59%), Gaps = 4/280 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I + L L+ +E++VA ++LA P + +A A+VS+PTV RFCRSM G Sbjct: 43 MLDRITASLPSLAPAEQRVARLVLADPRAFARQPVRELAERAHVSKPTVVRFCRSMGYDG 102 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 DFKL LA S++ G P+++R+V+ DD K+ ++A+A R++ +AI +A Sbjct: 103 LADFKLKLAGSVSEGVPFIHRSVDTDDKTSDVMVKVVDNAVAAFLQYRNAASTTAIEQAA 162 Query: 123 ----DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 ++I F+G G+S VA DA +KFFR V + + D +Q MS GD Sbjct: 163 QAIASTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGVTSLATSDGHMQVMSATLLGPGDC 222 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 V+IS++GRT++L++ A +AR+N A IA+T++G+PLA + + D PE D Y PMV Sbjct: 223 AVIISNSGRTRDLMDAADIARKNGATTIAITASGSPLASACHIHLAADHPEGYDRYSPMV 282 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SRL L VIDVLAT LR G + L+++K L+ R+ Sbjct: 283 SRLLHLLVIDVLATCVALRIGPALQPALEQMKNNLRAKRY 322 >UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=Burkholderia RepID=Q13K65_BURXL Length = 287 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 107/273 (39%), Positives = 159/273 (58%), Gaps = 1/273 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ I+S L +L +ERKVA+++L+ D A+ +SI +A A VSEP+V RFCR++ Sbjct: 5 NLIPHIRSALANLRPAERKVADMVLSDVDFAMRASITELAQRAEVSEPSVTRFCRAIGAH 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFK+ LAQS+A G PY + V DD V++ K+ E+A+ + H R +LD + + A Sbjct: 65 GLRDFKMQLAQSVAGGVPYASTAVARDDDVQTLMDKVGEAAIGGITHARGALDPAVVESA 124 Query: 122 VDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+ A+++ FFG+GS S VA DA +F R ++ D LQR+ GDV Sbjct: 125 IAALSSARRVFFFGVGSGSGLVAQDAALRFLRLDIASTAFTDGHLQRLYAGLMEPGDVAF 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+GR+ + E Q+A+E A IALT+ G+ LA + + L VP D P VSR Sbjct: 185 AISHSGRSVEVNESIQIAKERGATTIALTNVGSRLAWLVDIPLLLRVPSPIDPNTPGVSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 L L ++D LA G L+ G K + ++ K L Sbjct: 245 LVHLCIMDALAIGVALKAGPKTLEKMRHAKARL 277 >UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=Oxalobacteraceae RepID=A6T0F7_JANMA Length = 286 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/280 (40%), Positives = 166/280 (59%), Gaps = 2/280 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ I++Q + LSKSE+KVA +L P+ AI +I A+A +A VSEPTV RFCR++ G Sbjct: 2 LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + FKL LAQ LA + + +D K+ ++ TL +R+SLD +AI +A+ Sbjct: 62 WQAFKLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQAL 121 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +L +A I F+G G+S +A DA +KFFR VP V D + ++ GDVVV I Sbjct: 122 QVLGRANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAI 181 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S G + +L+ QLAR + A ++ L +GTPLA AT+ I +D+ TD Y P+ +RLA Sbjct: 182 SQRGSSLSLLRSVQLARSSGAAIVVLAPSGTPLAELATVLIPIDLHFHTDPYTPISARLA 241 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 L VID+LA G LR + R + ++AL+ +FD Q Sbjct: 242 HLVVIDILAVGLALRLSPERRKKMLNAQKALQ--KFDLQF 279 >UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBK7_9GAMM Length = 271 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 106/268 (39%), Positives = 170/268 (63%), Gaps = 1/268 (0%) Query: 11 LEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHL 70 L LSK+E +A ILA PD A++S+ A +A A VS+P ++RFCR++ FPDFK+ L Sbjct: 2 LPSLSKAESSIARAILADPDAAVNSTTADLARIAAVSDPMISRFCRTLGCSSFPDFKVRL 61 Query: 71 AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKK 130 A+SL + +++ V++ D Y K + A L+++R L + I + V L ++K+ Sbjct: 62 AKSLVSKASFISEAVSKGDDAALYIEKRINANQAALEYIRSKLKPAIIEQTVAALGRSKR 121 Query: 131 IAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKN 190 I FG+G +AA+A DA +K FR +P V +D ++QRM+ + VV++IS TGRT+ Sbjct: 122 IEIFGMGGAAAIAKDAQHKLFRLGIPTVAYEDHLMQRMAAAAADENTVVLVISFTGRTRA 181 Query: 191 LVELAQLARENDAMVIALTSAGTPLAREATLAITL-DVPEDTDIYMPMVSRLAQLTVIDV 249 ++E+A +A+ + A +IA+T+ +PLA+ A + IT D EDT IY+PM +R+ LT+ID+ Sbjct: 182 MIEIADIAKNSQATLIAITNPKSPLAKLADITITSGDEIEDTTIYVPMTTRIIILTIIDI 241 Query: 250 LATGFTLRRGAKFRDNLKRVKEALKESR 277 LATG L +G + LK +K +L ++ Sbjct: 242 LATGLALTQGPAIDEKLKTIKHSLDNTK 269 >UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family protein n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A71F3 Length = 300 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 154/279 (55%), Gaps = 1/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I ++L L+ ++R VA+V L P+ A+ + + +A+ A VSEPTV RFCR++ Sbjct: 11 DLFSLIHARLPDLAAAQRLVAKVFLDKPEWAMQAHVNEIAVFAGVSEPTVVRFCRALGFH 70 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFKL +AQ +A G+ ++RNV DS++ GK+ S+ L + L + I RA Sbjct: 71 GLRDFKLRVAQQVALGSVALHRNVTAVDSIDEIVGKVLRSSADILLDIERQLPREQIKRA 130 Query: 122 VDLLTQAKKIAFFGLGSSAA-VAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L A ++ +G+G+++ VA DA + FRF + D +Q S S GD V+ Sbjct: 131 ISALGSAHRVDCYGVGTTSGFVAADAQARLFRFGIQAQTYTDANMQMFSAATLSPGDGVI 190 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH GR L+E ++ARE A+VI + GTPLA E + +T +P + Y+ + Sbjct: 191 AVSHFGRMPFLLEAVRVARERGAVVIGICEPGTPLAGECDIPLTFALPASVNAYIGSDAC 250 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 +A L +ID+L G RGA + L+R++ L D Sbjct: 251 IAHLAIIDILIVGVAFERGAAGIEQLRRLQNVLSPHGLD 289 >UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X566_COMTE Length = 282 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 161/281 (57%), Gaps = 5/281 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML+++ + LE L+ +E++V ++++ +P S + +A E VS+PTV RFC+ + G Sbjct: 1 MLDQVMATLETLTPAEKRVGKLVIENPRRFASMSTSEIASECFVSQPTVVRFCKGLGYGG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 FK L ++G PYV+ +V+ D+ + K+ +S++ATL R + K +I RA Sbjct: 61 LTQFKQKLRGDRSDGVPYVHSSVDAGDTSFNVALKVVDSSIATLALFRTYVPKISIERAS 120 Query: 123 DLLTQA----KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + L A + ++F+G G S VA DA +F R +D Q ++ + +GDV Sbjct: 121 NTLAAAYSEQRSLSFYGSGHSGVVAQDAQLRFSRLGFNSTALNDGYSQVLNAASRKEGDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 VV +S +GRTK L+E +A+ A VIA+T +GTPLA ++ + D ED D Y+PM Sbjct: 181 VVALSCSGRTKELLESVDVAKRQGATVIAVTGSGTPLATMGSIHLATDHLEDIDRYLPMS 240 Query: 239 SRLAQLTVIDVLATGFTLRRG-AKFRDNLKRVKEALKESRF 278 SRL L VID++AT L+ G + +D L+R + L+ R+ Sbjct: 241 SRLLHLVVIDIVATAVALQIGCGRLQDQLERTQNHLRHRRY 281 >UniRef50_D2TXX6 Hex regulon repressor (RpiR-family transcriptional regulator) n=1 Tax=Arsenophonus nasoniae RepID=D2TXX6_9ENTR Length = 193 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/147 (56%), Positives = 110/147 (74%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+LE+I + E+L+KSE+KVA +IL +P NAIH IAA+ ANVSE TVNR CR MDT Sbjct: 1 MNILEQINNSFENLNKSEKKVANLILVNPQNAIHLCIAALVKLANVSETTVNRLCRRMDT 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GFP+FKL L +SL NG Y +R +++D +V SY K+F+SA+A L V+ +L+ + INR Sbjct: 61 KGFPNFKLRLTKSLPNGASYFSRLLDQDVTVISYRQKVFQSAIAELGIVKDNLNTTRINR 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAM 147 A+DLLTQ KKIAFFG+G AA A+ M Sbjct: 121 AIDLLTQIKKIAFFGIGFRAAYANIYM 147 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/49 (67%), Positives = 38/49 (77%) Query: 232 DIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +IYM MVS LAQLT+ID+LATGF LRR FRDNLKRVK+ L + DK Sbjct: 144 NIYMLMVSLLAQLTLIDMLATGFILRRRQNFRDNLKRVKDILHNTYLDK 192 >UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SX74_9RHIZ Length = 314 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 156/288 (54%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ L ++ER+VA+V+L A+ +S AA+A A VSEPTV RFCR++ Sbjct: 27 DIISLVKDSYSELRRAERRVADVVLDDVKYAVDASNAALAQRAGVSEPTVTRFCRAIGCE 86 Query: 62 GFPDFKLHLAQSLANGTPYVNRN-VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G DFKL LAQSL G Y+ ++ + + +F A L LD + + Sbjct: 87 GLRDFKLKLAQSLVVGALYLAKSPAPGSGNGMPFWNAVFGEARRALQEAERQLDPVELQK 146 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A +L+ +A+++ FGLG SS+A+A + + FR+ + V D L RM+ GD+V Sbjct: 147 AAELIAKARQVTVFGLGGSSSALAQETQYRLFRYGITVNAQCDPYLMRMTASTLKPGDLV 206 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + IS TGRT+ ++E +LA+ A I +T+ T LAR + + + VPE D P S Sbjct: 207 IAISATGRTREVIEAVELAKHYRANAIGVTAPDTELARACDVRLAVAVPEYPDTLKPTAS 266 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R A L +ID+LA + A R+ ++R+K + R K++ L D Sbjct: 267 RYAFLAMIDLLAVASAYKLDASARETVRRIKYNAQIHRTGKEMEPLGD 314 >UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YGT9_MOBAS Length = 305 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 150/260 (57%), Gaps = 3/260 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++++++ +L + +++R VA+ +L + D A SS+ A+A A VSEP+V RF R M Sbjct: 17 SLIDRMRQELPAMKRADRAVADALLENIDAATRSSVKAVAGRAGVSEPSVIRFARHMGCE 76 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVES-YTGKIFESAMATLDHVRHSLDKSAINR 120 GF DFK+ LAQ A G Y++ + S G ++E+ L D +A++R Sbjct: 77 GFSDFKIRLAQDYAIGRMYLSADYQHPAKTGSDVAGHVYEATSQALASAFAQRDPAALDR 136 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A DL+ ++++ FG+G SSA VA +A N+ FR ++ + D QR++ DV Sbjct: 137 AADLIDGSRRVFCFGVGGSSANVAAEAENRLFRLDLAASATADAYKQRITAATAGKDDVF 196 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITL-DVPEDTDIYMPMV 238 ++ S TGR ++L+E A+ A++ A +IA+T+AGTPLA EA + I L E+ YMP Sbjct: 197 LMFSVTGRPRSLIESARSAKQCGASIIAVTTAGTPLAIEADVLIPLIAFDEEKFFYMPNR 256 Query: 239 SRLAQLTVIDVLATGFTLRR 258 R QL ++D LAT RR Sbjct: 257 GRYGQLFILDCLATLLGGRR 276 >UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteobacteria RepID=B7LQI9_ESCF3 Length = 301 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 157/278 (56%), Gaps = 6/278 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ I + L+ +E+++A+ IL A+ IA +A S+ +V RF R++ Sbjct: 19 IDIISCITERFMALTATEKRIAQFILDDVPAAVELPIAELARLTQTSQASVTRFARALGC 78 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + + K+ LAQSLA G ++ +V + D V+ I+ES ++ L+ R SLD +AI++ Sbjct: 79 KDVRELKVKLAQSLAIGQRFI-LDVPDLDGVQG----IYESIISVLETHRRSLDMNAISQ 133 Query: 121 AVDLLTQAKKIAFFGLGSSAAV-AHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV L+QA++I G G + + + + + FR +PVV +D ++ RM C DVV Sbjct: 134 AVSWLSQARQILALGTGGGSTICSQEIQYRLFRLGLPVVSQNDALMMRMMCSAVMPQDVV 193 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 +++S G T ++E A +AR+ A VIA+T A TPLA + L + L V E I+ P S Sbjct: 194 IVLSLGGYTPEIIESAAIARQYGARVIAITPAQTPLAEQVDLVLPLLVQESDYIFKPTPS 253 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R A L ++DVLAT + A+ +D L+R+K L R Sbjct: 254 RYAMLAMVDVLATELAMANKAQAKDRLRRIKLVLDSHR 291 >UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales RepID=C0ZD50_BREBN Length = 288 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 2/278 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++++ LS E+++A+ IL IH SI +A + ++ TV R CR + RG Sbjct: 11 VLTQLRAIYTQLSGKEQQIADYILEHASEIIHFSITELADQCQCADATVFRLCRRLGFRG 70 Query: 63 FPDFKLHLAQSLANGTPYVNRNVN-EDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + FK+ LA + N +++ +N +DD V + KIF + + T+ + ++K + + Sbjct: 71 YQAFKIALASEVTNPKQTIHQEINLDDDDVSAIAEKIFTANIETIRDTQQIINKDELMKI 130 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V L A +I F+G G SA +A DA +KF R +P +Y D Q MS + G VVV Sbjct: 131 VSCLENASRIEFYGSGGSAVIAQDAYHKFMRTGIPCLYHSDAHYQVMSASLLTKGAVVVG 190 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G K+++ Q+A+E A I +TS G +PL R A + + E + SR Sbjct: 191 ISHSGSNKDILAALQVAKEAGAKTIGITSYGKSPLVRLADMCLYTTSRETVFRTEALSSR 250 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 LAQL++ID+L +LRR N++ ++EA+ R Sbjct: 251 LAQLSLIDLLYVAVSLRRQEDTIANIQHIREAISLKRL 288 >UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=Bacillales RepID=C4L752_EXISA Length = 282 Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 158/279 (56%), Gaps = 1/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN +I+ LSK E+++A+ IL P+ IH +I +A + +V+E TV RFC+ + Sbjct: 4 MNGTARIRGAYSTLSKKEQRIADYILKQPEQIIHHTINQVADDLDVAESTVFRFCQRVGF 63 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +G+ K+ LA + ++ ++ E D+ KIF + T++ R L+ ++ + Sbjct: 64 KGYQALKIALASDVVAPLQDIHEDITETDTALEIAEKIFSTNGKTIESTRQILEGVSLEK 123 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+L A++I FFG G SA VA DA +KF R + V + +Q MS + DV V Sbjct: 124 AVELFLGARRIEFFGSGGSAVVALDAYHKFVRSGLQVSAMLESHMQLMSASQLTTADVAV 183 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +ISH+G +K +++A+L +E +IA+T+ A +PL++ A +++ E + S Sbjct: 184 VISHSGASKETLDIAKLLKEKGVPMIAITNYAKSPLSKIADVSLYTVSQETAFRSEALAS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+A+L++ID L T +RRG R +L++++EA+ R Sbjct: 244 RIAELSLIDALFTAVMMRRGEAARTSLQQMREAISMRRI 282 >UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=Dictyoglomus RepID=B8E0M8_DICTD Length = 281 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 5/280 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++LEKI+ Q E SE KVA ILA +H I +A VSE T+ R C+ + R Sbjct: 4 SILEKIKEQKESFRDSEEKVANYILARWQEVLHLPITELAERIGVSEATIVRMCKKLGLR 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ LA V++ V E D +E+ K+F + + ++ + + I RA Sbjct: 64 GFQELKIALATEKIQPIKTVHQAVQEGDDLETILKKVFSANIRAMESTLNVISVKEIERA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D + A+++ +G+G S VA DA +KF + +P V D + MS DVV+ Sbjct: 124 IDAILNARQLQIYGVGGSGPVALDAQHKFMKTGIPTVAYIDSHMMAMSASILEPQDVVIG 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM--PMV 238 IS +G +K++ E +LA+ A I +T A TPL R L I L V + Y Sbjct: 184 ISASGSSKDIFEALELAKNRGATTIGITHYAKTPLDR--VLDIKLSVSSEETFYRTESTS 241 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +R+AQL++ID L G L+R K +NLK +EA+ RF Sbjct: 242 ARIAQLSIIDTLYIGVALKRLDKMIENLKLTREAIVPKRF 281 >UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNY6_HAHCH Length = 285 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 152/280 (54%), Gaps = 6/280 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++ + L KSE+KVAE +L +P++ IH I +A EA VSEPT+ RFCR++ Sbjct: 6 DILSWLRQNRDTLRKSEQKVAECVLRNPNDVIHMRIVDLATEAGVSEPTIVRFCRTICFD 65 Query: 62 GFPDFKLHLAQSLAN---GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F FK+ LAQ LA+ TP+ R+ DS++ KIF ++L V + L I Sbjct: 66 SFQSFKVSLAQQLASMQRQTPFRARS---GDSLQQLGAKIFSDVQSSLQQVFNQLAWDRI 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +A ++ + ++ FFG G+SAAVA DA KFFR D Q + DV Sbjct: 123 EQACAWISNSPRLYFFGYGASAAVAADAQQKFFRLKPSTHACPDPDTQMLIAGLVETNDV 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 ++ ISH+GRT NL++ AR + A V+A++ + LA A L I + V E+ D + P+ Sbjct: 183 IIAISHSGRTNNLIQSCMQARASGAKVVAISPPQSALANIANLNIGVSVDENADAFTPLA 242 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SRLA L ++D +A+ + + L + K+ L R Sbjct: 243 SRLAHLMILDTIASNLFQKLDEQHVQKLNQAKKNLSSLRL 282 >UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWE9_9CLOT Length = 301 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 156/273 (57%), Gaps = 3/273 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + ++++ + LSK E + AE + A + I+SSI +A A SE TV R C + RG Sbjct: 25 LYDRVEEKRGSLSKKELETAEYMAAHQEQLIYSSITDLAERAGSSEATVTRVCGKLGYRG 84 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F K+ +A+ L ++ N+ D E KIF SA+ TL + S++ A+ ++ Sbjct: 85 FQALKVGVARELTTPQEKIHENLEADSPAEVIIEKIFSSAIETLSMTQKSINVKAVAASI 144 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPV-VYSDDIVLQRMSCMNCSDGDVVVL 181 D L +A++I G G+SA++A DA +KF R ++ Y+DD +Q ++ + +D DV++ Sbjct: 145 DALCRARRIIIIGNGNSASIAADAQHKFLRLDLNAHAYTDD-HMQMIAVSSMTDQDVLLA 203 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G ++N+VE A A+E A VI+LT+ G +P+++ A + + E + SR Sbjct: 204 ISYSGSSRNVVEAAHQAKEQGATVISLTNEGSSPVSKLADICLNTYSQETRYRTYAISSR 263 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 +A+LT+ID + TG LR G K N + ++ AL Sbjct: 264 MAELTIIDTIYTGVALRLGDKAIANFEALERAL 296 >UniRef50_A5VV40 Transcriptional regulator, RpiR family n=37 Tax=Rhizobiales RepID=A5VV40_BRUO2 Length = 305 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/288 (31%), Positives = 151/288 (52%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ + SKS+R++A ++LA P A ++I+ +A A VSEPTV RFCR++ Sbjct: 18 DIITRLHVVAQEGSKSDRRLAGLVLADPHYASKAAISEIAARAGVSEPTVTRFCRALGCD 77 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTG-KIFESAMATLDHVRHSLDKSAINR 120 G DFK LAQ+LA G Y+ + D ES + ++A+A + +D + + Sbjct: 78 GVRDFKFFLAQALAIGGQYLTAEIPARDVRESRIATAVTDAAIAAIQRAGDGVDMGVLMK 137 Query: 121 AVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + L + G G S+ +A + N+ FR +PV D LQRM + V Sbjct: 138 VAERLAAGGPVLCLGSGGMSSMLATEMENRLFRLGIPVNAQVDGQLQRMYAAVTTHETTV 197 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +G +++VE +AR+ A +A+T+AG+ LAR A + I ED +IY P + Sbjct: 198 LAFSVSGFARSVVEAVLVARQYGAETVAITAAGSDLARAADMLIPFQPNEDGNIYKPTSA 257 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R L ++D++AT RG K ++L+R+K +L D L L D Sbjct: 258 RYGLLAILDMIATAAAEARGPKVLESLRRIKHSLNTLTIDDPRLPLGD 305 >UniRef50_UPI0000D541FA probable transcriptional regulator n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D541FA Length = 207 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 119/203 (58%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I++ L L KSE+KV E IL P + I A + +SEPT+ RFC+++ G Sbjct: 5 LLRQIKNSLSDLRKSEQKVGEFILNDPKSVITMKTAEASSAMGISEPTLIRFCKAIGFTG 64 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F D K++L+Q LA +V +NEDDS+ K+F+++++ + +VR +D+ + A+ Sbjct: 65 FQDLKINLSQQLAADDYFVMYEINEDDSIHELCEKVFDTSISEILNVRSQIDQDILENAI 124 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 + L AK++ F+ G SA VA D +KFFR +P Y D LQ MS + DVVV I Sbjct: 125 ETLVNAKRVEFYAFGGSAPVAMDGQHKFFRLKIPSSYISDPHLQFMSANSLERDDVVVAI 184 Query: 183 SHTGRTKNLVELAQLARENDAMV 205 S +G T L+E ++ R+N A V Sbjct: 185 SQSGTTTALIESVKIVRKNGAKV 207 >UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteraceae RepID=B9NXN7_9RHOB Length = 320 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 149/275 (54%), Gaps = 2/275 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ + + L+ E+KVA+ + + +I +A +VS+PTV RFCRS+ Sbjct: 32 VDLIPALHNSQTKLAVQEQKVADYVKDHLNEISSMTIGNLAERCSVSKPTVVRFCRSLGC 91 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDS-VESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF DFKL LAQ++A Y+ RN ++ S S ++ + ATLD +R +D + Sbjct: 92 EGFRDFKLRLAQNVAVSAQYLYRNAGDESSDANSAIDQVLGALFATLDVMRGQIDTERLE 151 Query: 120 RAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 A D ++I F G+G S+ VA +A N+FFR +P + +D + +M DV Sbjct: 152 EARDACLDRRQILFAGIGGGSSLVAQEASNRFFRLGIPSFFVNDSYVLQMRAAALGLEDV 211 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 + L+S +G +V A++A A I++T T L+ + +A+ ++PED+DIY P Sbjct: 212 LFLVSASGEADAIVSAAEVANGYGATTISITKPNTRLSDISKIALLTELPEDSDIYKPTA 271 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 SR A L ++D LA + ++NL+R++ +L Sbjct: 272 SRYAHLAIVDALAMTVAQEMTDETKENLRRIRASL 306 >UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSK7_9FIRM Length = 282 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 154/277 (55%), Gaps = 5/277 (1%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 E I+ ++ +L+ +ERK+A +L + D ++S+I +A A VS+ +V RFCRS+ +G+ Sbjct: 8 EIIRGRMNYLTNTERKIANYVLENYDQVLNSNITELAENAKVSDASVVRFCRSLGYKGYQ 67 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 DFK++ A+ + ++N + E DS + KIF ++ L+ SL+ + +A Sbjct: 68 DFKINAAKDVLPREKHLNPILEESDSPDMICHKIFNLEISVLERTLASLNMREVEKAAQF 127 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + K++ FFG G S V DA++KF + V V +D LQ M+ +GDVV+ ISH Sbjct: 128 IFHGKRVLFFGSGGSLLVGQDALHKFMKIGVQVYVHEDRDLQLMASSLAGEGDVVIGISH 187 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYM--PMVSRL 241 +G +++ + A+EN A IAL S G TPL++ A + I D + I+ + +R+ Sbjct: 188 SGSNYSVLRCLKNAKENGAQTIALVSRGKTPLSKIADVVI--DTASEETIFQSESVSTRI 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 AQL +ID L + + +++ ++A E++F Sbjct: 246 AQLAIIDSLVSIVAFMNYDESYRAIQKTRKATSENKF 282 >UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=Alphaproteobacteria RepID=C6B6F5_RHILS Length = 287 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 147/287 (51%), Gaps = 4/287 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ +Q LS SE ++AE+I+ + A+++SI +A A VS PTV RFCR + Sbjct: 1 MDIFSTLQEDKGRLSPSESRIAEIIVNDFEFAVNASIIELAERAKVSPPTVTRFCRRLGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFK+ LA++ G Y+ D + I A L + SLD +AI Sbjct: 61 ESFSDFKVQLARTAHIGVRYLKPESKSTDPAD-VAQDIITKAQNALFLLHRSLDLAAIEA 119 Query: 121 AVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV + +A I FG G S+ +A + N+ FR + + S D +Q M GDV+ Sbjct: 120 AVSHIAKADMIYAFGSGGNSSMIADELQNRLFRLGLRITASSDHSMQLMMAAAARPGDVL 179 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +GR LV +LAR+ IALT +P+A+ A + + +D+PE +IY P + Sbjct: 180 IGSSFSGRNMELVRAFELARQTKVKTIALTQTDSPVAKAAEIVVPIDLPEGHNIYRPTST 239 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR--FDKQLLN 284 R+A + ID+L++ K L+R+K+ L R D+QLL Sbjct: 240 RIAYIATIDILSSLVAYAVQPKATTTLRRIKQQLVIHRDGDDRQLLG 286 >UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PDB4_BACCO Length = 283 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 150/270 (55%), Gaps = 3/270 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +IQ+ S ERK+A+ IL +P +HS+I +A + V++ TV RFC+ + GF Sbjct: 11 LHRIQTMYSEFSAKERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSGF 70 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 K+ LA A ++ V + D+ ++ K+FES + TL H+L++ ++ AV+ Sbjct: 71 QALKIALAAEAARPGKNMDEAVKDTDNEKAVAIKVFESNIETLQDTIHTLNQKHLHEAVE 130 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 + +AK I F+G GS++ +A DA+ KF + ++ V D LQ +S C+ DV V IS Sbjct: 131 WICRAKHIVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFIS 190 Query: 184 HTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI-YMPMVSRL 241 H G K +++L Q ++ A IA+T A +PL+++A + + V ++ D + +R+ Sbjct: 191 HAGADKEMLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPL-FTVSQEADFRFSSFSARI 249 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKE 271 QL++ID L LR + L++ KE Sbjct: 250 VQLSLIDTLYVNVMLRYKDTNEEILQKGKE 279 >UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJF9_BREBN Length = 297 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 147/278 (52%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L IQS L +KSE+KVA ++L D+ I+SS+ +A +A V E TV RFCR + Sbjct: 20 NTLLHIQSLLPSFTKSEQKVAHIVLQQTDSVIYSSVIDLAEKAGVGETTVLRFCRKIGFH 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FKL LAQ L N ++ V EDDS++ T K+ + + + R Sbjct: 80 GYQEFKLALAQELVNPVKNLHGEVGEDDSLDIITHKVTATNQQAIGDTSALFQLEQLERC 139 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VDLL +A I F+G+G+SA A DA F R + V ++ LQ M+ GDV + Sbjct: 140 VDLLQKANTIHFYGVGTSAVTAQDAKYTFLRIGLRVDAFNESHLQAMAAATLGPGDVAIG 199 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G TK+ ++ ++A++ A I LT +P+ A + + E + ++ Sbjct: 200 LSVSGSTKDTIDSLKVAKQAGAACICLTHYRRSPITNVADITLLTAAQEGPLQGGSLAAK 259 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL V+DV++T T+R K +R +A+ E ++ Sbjct: 260 IAQLHVLDVISTTITMRNKEKALLYKERTAKAVLERKY 297 >UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulator TTE0211 n=3 Tax=Clostridia RepID=Y211_THETN Length = 282 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 139/264 (52%), Gaps = 4/264 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L I+ + SE K+A+ IL +P S+ +A + SE ++ RFCR++ + Sbjct: 3 DVLAVIREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGLK 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ +A SLA T ++ + +D V + KI +D L+ + +A Sbjct: 63 GFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A KI F+G+ +S VA+DAM KF R N+P D LQ S +N GDV Sbjct: 123 AEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAFG 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G TK +VE Q A+E A I+LT G +PLA+ A + + + E M SR Sbjct: 183 ISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMFRAGAMASR 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRD 264 +AQLTVID+L F L K+ D Sbjct: 243 IAQLTVIDIL---FILVAQKKYND 263 >UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=Roseobacter sp. GAI101 RepID=B7RLA4_9RHOB Length = 317 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 10/267 (3%) Query: 13 HLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQ 72 HL+ E+KVA + A ++ +IA +A +VS PTV RFCR++ GF +FKL LAQ Sbjct: 41 HLATQEQKVANYVKAHLEDISAMTIAELAGHCDVSTPTVIRFCRTLGCDGFREFKLRLAQ 100 Query: 73 SLANGTPYVNRN-----VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQ 127 +LA Y++ + + D ++ G I+ SA + +R +D ++RA L + Sbjct: 101 NLAVSMQYLSADPQPEPADGDTAINQILGGIYASA----NVMRRQIDPEVLDRAKSALLK 156 Query: 128 AKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 + + F G+G S+ V+ +A N+FFR +P + D + +M GDV+ LIS +G Sbjct: 157 TRHLLFAGIGGGSSNVSQEAANRFFRLGIPSFSTSDSYILQMRAATLQAGDVLFLISASG 216 Query: 187 RTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTV 246 +V A++A A I +T +GT LA + I +D+PED DI+ P SR + + Sbjct: 217 EADAIVGAAEIAGGYGATTICITKSGTRLANVCNIPILIDLPEDRDIHKPTASRYIHMII 276 Query: 247 IDVLATGFTLRRGAKFRDNLKRVKEAL 273 +D LA + +NL+R++ +L Sbjct: 277 VDALAMSVAQDLAHETTENLRRIRASL 303 >UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q8T9_9THEO Length = 282 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 136/252 (53%), Gaps = 4/252 (1%) Query: 17 SERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLAN 76 SE K+A+ IL + D SI +A + SE ++ RFCR++ +GF + K+ +A SL+ Sbjct: 18 SEAKIAKYILDNADVVTELSINELARACDTSEASIVRFCRTIGLKGFQELKIKIAVSLSK 77 Query: 77 GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGL 136 T ++ + +DD V KI +D+ LD +I +AVD L+ A KI F+G+ Sbjct: 78 QTKKLDGGITDDDDVSDVIQKIANFNKQAIDNTISLLDVKSIIKAVDALSNANKIDFYGV 137 Query: 137 GSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQ 196 +S VA+DAM KF R N+P D LQ S N GDV IS++G T+ +VE + Sbjct: 138 AASGTVAYDAMLKFARINIPCTAYQDTHLQLTSAANLKKGDVAFGISYSGCTREIVEALE 197 Query: 197 LARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFT 255 +A+E A I+LT G PL + A + + + E SR+AQLTVID+L F Sbjct: 198 VAKEAGATTISLTKFGQFPLVKVADINLFVSSEEPLFRSGATASRIAQLTVIDIL---FI 254 Query: 256 LRRGAKFRDNLK 267 L K+ D +K Sbjct: 255 LVAKRKYNDVVK 266 >UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n=4 Tax=Firmicutes RepID=A8FIY5_BACP2 Length = 286 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 149/278 (53%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ I++ LS +++K+A IL +P + SI+A+A E N SE T+ RF R + Sbjct: 8 NIFSHIRTTFHSLSPTQKKIANYILENPQKVVLHSISALASECNTSETTIFRFLRKIGYE 67 Query: 62 GFPDFKLHLAQSLANGTPY-VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + F++H+AQ +A TP + + DSV K+ E ++ ++H ++ A+ + Sbjct: 68 SYQVFRVHVAQDIATNTPQSIYGEIEASDSVADIKHKVIELTTNSIQDMKHIVEDHAVTQ 127 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ + QA K FFG G+S+ +A DA +KF + V D + M + ++ D +V Sbjct: 128 FIEQMKQAHKTVFFGAGASSFIAGDAYHKFLQLGFDVSLCSDPHMMNMIATHATEHDFIV 187 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+G ++ +++ Q A+E A + ++TS + LA+ + + E T M+S Sbjct: 188 AISHSGESREILDAVQFAKEKGAKIASITSYPKSELAKRSDFHLLSSSRETTYRSDSMIS 247 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R+ QL +IDVL L G+ +N+KR + A+ +++ Sbjct: 248 RINQLVIIDVLYVAAVLELGSNAIENVKRSRLAVAKNK 285 >UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes RepID=Q8R7I8_THETN Length = 285 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 153/278 (55%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ KIQS L+ +E+KVA+ +L + ++ I+ SI +A + E T+ RFCR + Sbjct: 8 NVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLS 67 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +FKL+LA+ +A ++ N++ +D ++ KI + + L S + +A Sbjct: 68 GFQEFKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSELEKA 127 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD + A+KI F+G+G+S A DA KF R + V + D +Q +S ++ +D DV V Sbjct: 128 VDAIINARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLTDKDVAVG 187 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G TK+ VE +LA+E A VIA+T+ A +P+ A + + E + S+ Sbjct: 188 ISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRSGALTSK 247 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL ++D+L T ++ K L + +A+ E + Sbjct: 248 IAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEKLY 285 >UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TJ91_CLOBB Length = 285 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 1/276 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 LE+I + L +E+KVA+ +L +P N IH SI +A + SE TV R C + +G+ Sbjct: 10 LERITNIYSELKGAEKKVAQYVLENPKNIIHFSITELAEVSKASEATVFRLCSKLGYKGY 69 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K++LA S+ + V E+D KI S + +++ +++A+ Sbjct: 70 QDLKINLAGSVIEPIDNIYEEVKENDDTYIIMRKIMSSNINSIESTLKINKTEDLDKAIA 129 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 ++ AKKI FFG+G S +A+DA +KF R + V S D Q M + GD ++ S Sbjct: 130 IILNAKKIMFFGMGGSWTIANDAYHKFIRTGIDCVASCDSHWQVMFSSMANSGDAIIAFS 189 Query: 184 HTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 ++G K LVE LA++ +IA+T + +PLA+ + L + E M SRL Sbjct: 190 NSGSNKELVENINLAKKRGIKIIAITGNEKSPLAKISDLHLIAYGNESMFRSEAMESRLT 249 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L ++D L G ++R K NL+R++ + RF Sbjct: 250 SLMIVDWLYVGVAIKRKDKTLGNLERIRNGIASKRF 285 >UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=Rhizobiaceae RepID=A6UIG8_SINMW Length = 287 Score = 142 bits (359), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 156/291 (53%), Gaps = 12/291 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ +Q + LS+SE ++A+++L + A+++SI +A +A+VS PTV RFCR + Sbjct: 1 MDIFATLQEEKGRLSQSENRIADILLNDFEFAVNASIIELAGKADVSPPTVTRFCRRLGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGK----IFESAMATLDHVRHSLDKS 116 F DFK+ LA+ TPYV + + G I A L + SLD + Sbjct: 61 ESFSDFKVQLAR-----TPYVGMRYLKPEPKSQEPGDVAQDIITKAQNALLLLHRSLDLA 115 Query: 117 AINRAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 AI RA D L QA+ I FG G S+ +A + N+ FR + + S D +Q M Sbjct: 116 AIERAADQLAQAEMIYAFGSGGNSSMIAGEFQNRLFRLGMRITSSSDHSMQMMMAAAARP 175 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYM 235 DV+V S +GR LV LARE IALT +G+P+A+ A + + +D+PE +IY Sbjct: 176 ADVIVGSSFSGRNAELVRAFILAREAKVPTIALTQSGSPVAQAADITVPVDLPEGNNIYR 235 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR--FDKQLLN 284 P +R+A L ++D++A+ R + L+R+K+ L R D+QL+ Sbjct: 236 PTSTRIAYLALLDIVASLVAYRVQPQATVTLRRIKQQLVVHRDGDDRQLMG 286 >UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y2D5_LEPCP Length = 616 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 138/256 (53%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ +++ L LS SER VA +L++P + SIA +A VS PTV RFCR+M +G Sbjct: 337 LLDDVRAALPRLSTSERLVAGDLLSAPRAWMSDSIARIADRCGVSTPTVMRFCRTMGFKG 396 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 DFKL L L+ T +R V D I ++++ L +R L A +AV Sbjct: 397 LADFKLRLGAGLSGSTKVAHRPVRAADPTAERMATILNNSISALIELRDRLHPQAFEQAV 456 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A++I +G+G++A A +A +KF R + VV D LQ ++ DV++++ Sbjct: 457 KLLANARRIEVYGVGAAALAAEEAQHKFGRLGLQVVARTDSQLQNVTAAFLGPDDVLLVL 516 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S++G + E AR + VI + + LAR + + + +D PED +PMVSRL Sbjct: 517 SNSGAVDPVNEAVMRARRSGTRVIGMCPQRSDLARLSDVILPVDHPEDLQALVPMVSRLM 576 Query: 243 QLTVIDVLATGFTLRR 258 Q ++DVL T L+R Sbjct: 577 QTVIVDVLVTDLALQR 592 >UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSQ6_9FIRM Length = 287 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 149/275 (54%), Gaps = 1/275 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+S + L+K+E+KVA+ IL + +H SI +A + +E T+ R C+ + RG+ Sbjct: 12 LPRIRSIYKALTKAEQKVADYILENAAKVVHLSITELAEVSGSAEATIFRLCQKVGYRGY 71 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 FK+ LA L V ++VN DS+ K+F L +D++A+++AV Sbjct: 72 QHFKIALAGDLYTPAELVYKDVNAGDSMGVIARKVFHDINEGLQDTLKIIDEAALDKAVA 131 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 +T+A++I +G SA +A D +F RF +PV D +Q +S GD+ + +S Sbjct: 132 AITKARRIDAYGSAGSAVIAADIEYRFMRFGIPVRAYADPHMQIISAALMQPGDLAIAVS 191 Query: 184 HTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 HTG ++L++ +A++N A VIA+TS +PL++ A + + E M +RL Sbjct: 192 HTGANRDLLDSVAMAKQNGATVIAITSYMKSPLSKLADITLCGSAKETEYRSEAMAARLV 251 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L ++D L G L R +N++++++A+ R Sbjct: 252 HLAIVDALYVGVMLDRQDCIVENMEKIRKAIAIRR 286 >UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=Ralstonia pickettii RepID=B2UF98_RALPJ Length = 287 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 149/279 (53%), Gaps = 1/279 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +++QL LS +++ VA +IL +P+ ++ S+ +A+ A VS PT+ R C+++ G Sbjct: 8 LLNALRAQLPALSPAQQGVARLILDAPELSLEQSVETLAVRAGVSMPTIVRMCQALGFEG 67 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 +FK LA LA+ P + +V D K+ + A L +R SL + ++ A Sbjct: 68 LREFKATLAAELAHAQPTLPGHVGRADPPALVASKVIDGATRALAKLRESLSTTQVDAAA 127 Query: 123 DLLTQAKKIAFFGLGSSAA-VAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + + +A+++ + G++++ +A+D + R + D LQ +S DVVV Sbjct: 128 ERIARARRVDCYAAGAASSFMANDMQARLMRLGLASNAYFDAHLQLVSAAMLGASDVVVA 187 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH GR L+E A E A VIA+T AGTPLA A +A+T+DVPED + + + L Sbjct: 188 FSHVGRMPYLLESIAYAAEQGACVIAITQAGTPLAERAQIALTVDVPEDAVMRVGTEAYL 247 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 LTVI++L T RR R ++ ++ L E D+ Sbjct: 248 VHLTVIEILMTCVAQRRDEMVRSRMRAIQRLLTERSVDR 286 >UniRef50_Q89XK4 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89XK4_BRAJA Length = 318 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 3/242 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ I+ LS SE++VA +LA + AIH+S A +A A VSEPTV RF RS+ R Sbjct: 30 DIISVIRQSAPSLSPSEQRVAMALLADVEFAIHASNAELARSARVSEPTVTRFSRSVGCR 89 Query: 62 GFPDFKLHLAQSLANGTPYVN--RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G D K+ LAQ++A G YV +V D + + +F+ + L K I Sbjct: 90 GVRDLKVRLAQAMAVGRIYVELPPHVGTDLARPALWRSVFQEIRRAIAAAEEGLRKEDIE 149 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAH-DAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA + +++ K+A FG+G + +A + N+FFR + V ++ D L RM + DV Sbjct: 150 RAAEAISRCSKLAAFGVGGGSTLAAMEVQNRFFRLGIAVSHTSDPSLMRMIAATLGEEDV 209 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 VV IS TG ++E A +A++ A+V+A+T + LA A +A+ + VPE D P Sbjct: 210 VVAISTTGAASEVIEAAGIAKQYGALVVAITRPQSRLASIADIALGVHVPEAPDALKPTA 269 Query: 239 SR 240 SR Sbjct: 270 SR 271 >UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=Rhodobacteraceae RepID=Q1GCY7_SILST Length = 300 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 101/275 (36%), Positives = 146/275 (53%), Gaps = 14/275 (5%) Query: 9 SQLEHLSKS----ERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 S L L+ S E+KVA+ + A + + +IA +A VS PTV RFCRSM GF Sbjct: 16 SNLRELNGSFAAREQKVADFVSAHLEEISNMTIAELAGAVGVSTPTVVRFCRSMGCDGFR 75 Query: 65 DFKLHLAQSLANGTPYV---NRNVNEDDS--VESYTGKIFESAMATLDHVRHSLDKSAIN 119 +FKL LAQ+LA Y+ R V E + V+ G ++ AT++ +R L ++ Sbjct: 76 EFKLRLAQNLAVSLQYLAPSQREVPEGGAGAVDQVLGALY----ATVNVMRQQLVPERLD 131 Query: 120 RAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 A L A +I G+G S VA +A N+ FR +P V D L +M GDV Sbjct: 132 AAAAALAAAGQIVVAGVGGGSTMVAQEAANRMFRLGIPAVSISDSYLLQMRAATLVKGDV 191 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 ++L+S +G +V A +A A V+A+ G+ LA+EAT+AI D+PED DI P Sbjct: 192 LLLVSASGAADEIVSAAAIAGGYGATVVAIARPGSRLAQEATVAIEADLPEDPDILKPTA 251 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 SR A L ++D LA R A +NL+R++ +L Sbjct: 252 SRYAHLVIVDALAMSVAQARTAATTENLRRIRASL 286 >UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=Ralstonia RepID=B2UK47_RALPJ Length = 280 Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 2/226 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ E+I++ LS +ER+VA+ +L P + +AA+A EA VS+PTV RFCRSM Sbjct: 16 DLRERIRAARPSLSPAERQVADWVLRQPGTVLSLPVAAIAREAGVSQPTVIRFCRSMGCH 75 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFKL LAQ N R +V ++ + + L +R D A++ A Sbjct: 76 GLSDFKLRLAQG--NAAHDKPRGAAAPSNVPRSGTRVLQDTIDALAAMRDRFDPLALDAA 133 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V L+ A +I +G GSS VA DA KFFR+ +P D L MS GDVV+ Sbjct: 134 VALVDTAHRIDLYGFGSSGVVARDAQTKFFRYGIPANAYSDPYLVSMSLNVLQAGDVVIA 193 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDV 227 IS +G L + RE VIA+T+ G+PLA A + + DV Sbjct: 194 ISKSGALPELQTAVERVRELGVHVIAVTAPGSPLAALADVVLPADV 239 >UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Clostridiales RepID=C2L140_9FIRM Length = 285 Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 132/214 (61%), Gaps = 7/214 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L KI+S +K+E+KVA+ IL +PD + SI+ +A V + +V RFC++M+ + Sbjct: 4 DFLTKIRSAYNQFTKAEKKVADYILQNPDQVLFMSISDLAETCKVGDTSVFRFCKTMNVK 63 Query: 62 GFPDFKLHLAQSL-ANGTPYV---NRNVN-EDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ +FK+ L+ S+ NG NV+ +D+++ GK+ E + ++ LD + Sbjct: 64 GYQEFKMTLSLSMRGNGKESKEGDGGNVSLQDNNIAELAGKVLEETIDSIKETHSLLDFN 123 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQR-MSCMNCSD 175 + A++ L++AK+I FFG+G+S A AMNKF R P VY ++V Q+ MS Sbjct: 124 KVTEAMNALSKAKRILFFGVGASMLTAMKAMNKFHRIE-PKVYCSEMVSQQLMSAATMER 182 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT 209 GDV V+ S++G T+++VE+A+LA+E+ A V+++T Sbjct: 183 GDVAVIFSYSGATRDIVEIAKLAKESGATVVSIT 216 >UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n=51 Tax=Bacillus RepID=A8FJ30_BACP2 Length = 285 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 146/279 (52%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++ +EKI++ L + +AE I + P + IH SI +A + SE T+ R C+ + Sbjct: 6 LSSIEKIRAASRGLPPKLKAIAEHITSEPRDIIHLSIVELAKKTASSEATIFRLCKRLGF 65 Query: 61 RGFPDFKLHLAQSLANGTP-YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF D K+ +AQ + P YV+ ++ DD + + K+F++ ++ L L+ + Sbjct: 66 EGFQDLKIAIAQEIDQTKPNYVDEEMSLDDDMAVFMQKVFQTNISALKDSFQLLNPEDVE 125 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A+ ++ +AK++ F+G G S +A DA +KF R + + D Q MS V Sbjct: 126 KAIQIIHEAKRLEFYGSGGSGLIATDAFHKFMRTGINCIVHTDSHFQAMSAGLLDQHSTV 185 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + ISH+GR K+L++ + A+ A I +TS +PL++ A + + E M Sbjct: 186 IGISHSGRNKDLLDAMKTAKSKGAKTIGITSYQRSPLSQLADVTLYTATQETAFRTEAMS 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +RLAQLTVIDVL R + NLK+++E + + R Sbjct: 246 ARLAQLTVIDVLYFALAHLRQQETITNLKQMRETISQKR 284 >UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BB20_PARDP Length = 280 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 4/229 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ML++I+ L + +ER+VAE +L +P AI SI+ A A VSEP++ RFCR +D Sbjct: 14 EMLDRIRQSLASFTPAERRVAEAVLDTPSTAITWSISDAARIAKVSEPSIIRFCRRLDCD 73 Query: 62 GFPDFKLHLAQSLAN----GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 GFPDF+L LAQ LA P DD + + IF+ A ++ R LD A Sbjct: 74 GFPDFRLKLAQQLAKHQPAPQPLARPGSGNDDPLAAMVDDIFQRAGQAIEEARRDLDLGA 133 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + AV +L +A+++ +G GSS +A +A ++ +P V D LQ S GD Sbjct: 134 LRAAVAMLGKARRVDIYGYGSSGFMASEAQHRLAALAIPAVAYSDPTLQMHSAPLLGPGD 193 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLD 226 ++ ++S +G T L+ ++AR+ A V+A++ G+ +A A + + L+ Sbjct: 194 LLFVLSFSGLTSYLISNIEIARKAGAPVLAISPKGSIVASLADVNLNLN 242 >UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator n=2 Tax=Enterococcus casseliflavus RepID=C9AZQ1_ENTCA Length = 283 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 153/276 (55%), Gaps = 11/276 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I++ + LS E+ +A+ IL +P HSSI+ ++ E +++ T +F + + GF D Sbjct: 8 QIKTLYKDLSLKEQAIADYILENPSKVSHSSISDLSNELGIADSTFFQFTKKLGYNGFKD 67 Query: 66 FKL-HLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 FK+ L Q ++ N+ + D+ + K+F+S M TL ++ L + + A + Sbjct: 68 FKMAMLMQENDFSAISIHENIQKSDNELTMAQKVFDSNMTTLTDTKNLLKEEDLKLAAAM 127 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + Q+K++ FFG+G S VA DA +KF R + V +S D +Q M + D + ISH Sbjct: 128 INQSKRLFFFGVGGSEIVATDAYHKFLRSPITVFHSSDYHIQLMEASLLTPDDCGIFISH 187 Query: 185 TGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM-PMVSRLA 242 TG+++ +ELAQ+A+ N A +I +TS A +PLA+ + + + + E+T+ + SR+A Sbjct: 188 TGKSRETIELAQVAKNNGAKIIVITSHAASPLAKLGDV-VFISISEETEFRSEALASRIA 246 Query: 243 QLTVIDVLATGFTL-------RRGAKFRDNLKRVKE 271 QL+++D L + AK R ++ ++KE Sbjct: 247 QLSIMDSLYVILMFINRDKAQQSIAKIRRSISKIKE 282 >UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNS3_LACPJ Length = 292 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 149/279 (53%), Gaps = 5/279 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L I+S +LS ++RK+A+ I+A P SI+ +A VS TV+RF + + Sbjct: 12 VLTLIRSYYPNLSVTDRKIADYIIADPIKTAAQSISDLAAAVGVSTATVSRFVKRISFSS 71 Query: 63 FPDF--KLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DF +L A+ + ++V + + + F S ++LD + ++ + R Sbjct: 72 FRDFSRELTAAEPIEQTNAEAFQDVEKQTTFKGIAESTFNSIRSSLDQTSQVMTEADLKR 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+LL A+ I F+GLG SA A D +KF R +P ++ D +Q M + DV V Sbjct: 132 AVELLLNARSIGFYGLGGSAVAALDGYHKFVRTGIPCAHNSDYDMQLMQAAQMNASDVAV 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMP-MV 238 +ISHTGR + +++ VIALTS G +PLA+++T+A + V E+ + + Sbjct: 192 VISHTGRNQQTLQVLATLTSQSVPVIALTSFGNSPLAKDSTVAF-ISVAEEINYRSEGLT 250 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S +AQ+++ID L + + ++L RV+EA+ ++R Sbjct: 251 SLIAQMSIIDSLFLMTAVHGNIEMAESLGRVREAISQTR 289 >UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=Actinomycetales RepID=C7MQM6_SACVD Length = 333 Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 149/282 (52%), Gaps = 9/282 (3%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+S L L+++E++VA+V+L P + SI +A+ A SE TV RFC+++ G+ Sbjct: 40 LVRIRSLLPGLARAEQRVAKVVLEDPSSVARRSITEVAMAAKTSETTVTRFCKAIGVGGY 99 Query: 64 PDFKLHLAQSLANGTPYVNRN----VNEDDSVESYTGKI-FESAMATLDHVRHSLDKSAI 118 P ++ LA A +R+ + DD + S K+ F A A ++ LD + + Sbjct: 100 PQLRIALAADTARTEAKSSRDLGGDITADDDLASVVSKVSFADARA-VEETAEQLDIAEL 158 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFN-VPVVYSDDIVLQRMSCMNCSDGD 177 R +LL +A ++ +G+G+SA VA D K R V +SD ++ S S+GD Sbjct: 159 TRVTELLAEATRVDVYGVGASAFVAADLQQKLHRIGRVSFAWSDTHIML-TSAAVLSEGD 217 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V V ISH+G T + VE ++A+E+ A +A+T+ +P+A A +T E T Sbjct: 218 VAVAISHSGATTDTVEALRVAKEHGATTVAITNFPRSPIASVADHVLTTAARETTFRSGA 277 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+AQLTVID L G RR + L+ +EA+ R Sbjct: 278 TASRIAQLTVIDCLFIGVAQRRMDESMAALEATREAVNGHRL 319 >UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q61_LACBA Length = 286 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 154/281 (54%), Gaps = 10/281 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI+ + LS++E+KVA++ L +P +I +A VS T++RF + MD + + Sbjct: 8 KIRGTYDQLSRTEKKVAQMALNTPAVVSEMTIKELASATGVSTATISRFVKRMDYANYRE 67 Query: 66 FKLHLAQ-SLANGTPYVNR--NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F + LA ++ +G + + + E DS+ + K F +++L+ +L + + RAV Sbjct: 68 FTMALAHLAIEDGGEHQSSFPELAEGDSLATIANKTFHYTISSLEATNEALSEKDLARAV 127 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L A+K+ FFGLG S+ A D +KF R + V Y D +Q M SD D V+I Sbjct: 128 LKLINAEKVTFFGLGGSSIAALDGYHKFLRTALSVTYYPDFDIQLMQAARLSDQDCAVVI 187 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREAT---LAITLDVPEDTDIYMPMV 238 SH+GR +++ + + ND +IA+TS +G+PLA+ A L++T +V ++ M Sbjct: 188 SHSGRNSETLQVVEELQRNDVSIIAITSYSGSPLAQAADVTFLSLTDEVNYRSE---GMY 244 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 S ++QL ++D L LR ++ + + +V + ++++R D Sbjct: 245 SLISQLAILDTLFMMTVLRVSSRTGNVMTKVHDVIEQTRHD 285 >UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJG3_9BURK Length = 325 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 144/286 (50%), Gaps = 4/286 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I L +ERKVA +IL A +SI A+A +A VS TV RF +++ R Sbjct: 40 DIVARIAECAPELRSAERKVAALILDDLTGASRASIGALAQQAEVSIATVTRFAKAVGCR 99 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + KL LAQ+ A G ++ R+ D+ E ++F+ L H L ++ + A Sbjct: 100 DVRELKLRLAQAAAVGQRFLERDAA-SDAPEPIATRVFDELQTALAHNHQLLRQAPLAEA 158 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMN-KFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 L A+ I FG+G + D M + R PV D +LQRM S VVV Sbjct: 159 AAALRNARMIYVFGMGGGSTALADEMRFRLVRLGRPVATYQDGLLQRMVASTVSRDCVVV 218 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S TGR +VE ++AR A V+A+T+ +PLAR A I + E IY P SR Sbjct: 219 ALSTTGRVPEMVENCKIARSYGATVVAVTAPASPLARLADWLIPIVAFETDFIYKPSSSR 278 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR--FDKQLLN 284 A + +DVL T + +G + R+ L+R+K AL R D+Q L Sbjct: 279 YAMMMALDVLVTELAVSQGDESRELLRRMKHALDAHRGGGDRQPLG 324 >UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9W4_9FIRM Length = 280 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 151/273 (55%), Gaps = 3/273 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +Q L+++E+K+A+ + + + SI +A E +V++ +V+RFCR++ + Sbjct: 5 NVLLSMQLSYNQLTRTEKKIADYVQKNAQKVLFMSITELAEECHVADASVHRFCRTIGAK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FK+ L S+ G E+D E ++ +S + ++ LDK +++A Sbjct: 65 GYQEFKMWL--SINMGHEKGEEESEEEDGKEPIFQQVLKSHLEAINETNQLLDKEKVDQA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V +LT+A++I FFG+G S A +A NKF V+ + D LQ M+ ++ D++ + Sbjct: 123 VRMLTEARQIMFFGVGDSKTAAIEANNKFLHVTPKVMCAGDTHLQAMAASMMTEEDLLFV 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S++G TK+ VE+AQ+A+E A VI++T +PL + + E M ++ Sbjct: 183 VSYSGSTKDTVEVAQIAKEAGAKVISITRFLKSPLTEFSDCVLICGSKEGPLEGGSMGAK 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 L+QL +ID+L + G K R+N ++ A+ Sbjct: 243 LSQLHIIDILYQCYFKANGKKARENRQKTANAV 275 >UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=Proteobacteria RepID=Q0BBX6_BURCM Length = 324 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 148/281 (52%), Gaps = 7/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ +I L ++ERKVA ILA A H+SI A+A +A VS TV RF +++ Sbjct: 37 LDIVARIAECAPELREAERKVAAYILADLARAAHASIGALARDAGVSVATVTRFAKAVGC 96 Query: 61 RGFPDFKLHLAQSLANGTPYV---NRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 R + K+ +AQ+ A G ++ + + ED S S +++ L H L ++ Sbjct: 97 RDVRELKVLVAQAAAVGQRFLVPSDAHPAEDASPASV---VYDEIRVALAHNHQLLRNTS 153 Query: 118 INRAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + A DLL AK + +G G S A+A + + RF PV D +LQRM S Sbjct: 154 FDAAADLLAGAKMVYVYGQGGGSTALADELRFRLVRFGRPVASYQDSLLQRMVAATLSRD 213 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMP 236 VVV +S +GR L+E +LA+ A +IA+T+ +PLA+ A I + E IY P Sbjct: 214 AVVVALSVSGRVPELLESCRLAKRYGATLIAITAPASPLAKLADHLIPVVAFETDFIYKP 273 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR A + IDVL TG LR G R++L+R+K AL R Sbjct: 274 STSRYAMMMAIDVLVTGVALRLGDAGRESLRRIKHALDAHR 314 >UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4LA29_STAHJ Length = 283 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/276 (31%), Positives = 138/276 (50%), Gaps = 5/276 (1%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I+S L L+ SER+VAE IL PD I+ S+ +A NVS TV R + + +GF D Sbjct: 8 IESSLSDLNPSERRVAEYILEHPDEIINYSVQKLADLTNVSVATVVRLSKKLKCKGFQDL 67 Query: 67 KLHLAQSLANGTPYVNRN---VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 KL +A L N + R +++D S+E T +F + TL L I A + Sbjct: 68 KLKIAYDL-NEPGNIQRGYAEIDKDYSIEEVTQTVFHNNTKTLRDTERILSTENIKHAFE 126 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L+ ++K +G+G+SA +A D K R + Q N S DVV+ IS Sbjct: 127 LIVNSRKTCIYGIGASALIAQDFKQKLTRIDYWCDVGSSFDEQVTLSANLSSEDVVIAIS 186 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLA 242 +G+TK++V QLA+E A VI++T G P++ + + + + E M SR+A Sbjct: 187 SSGQTKDIVNSTQLAKEKGAKVISITKYGDNPISNLSDVQLFVSSSEKAKRSGAMSSRIA 246 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L++ID+L R L+ ++A+K ++F Sbjct: 247 MLSIIDILYICIASNDYLSNRQKLENTRKAIKNNKF 282 >UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1J5_9FIRM Length = 282 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 141/277 (50%), Gaps = 1/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 L+ I+ +L L+KSE+K+AE IL P+ + ++I +A S+ ++ RFC+ +G Sbjct: 6 FLQLIEDKLGTLTKSEKKIAEYILEHPNRVVDATITELAERIGTSDASIVRFCKLFGCKG 65 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + +FK+ LA+ + +N + + D+ + KIF + +ATL L+ + Sbjct: 66 YQNFKIRLAREVVPHYKQLNVALEQHDTALTICQKIFNTEIATLHETLEMLNVEHLQTMA 125 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 + +A I FG G S+ VA D +KF + + D +Q MS GDV + I Sbjct: 126 QRIREADYIEVFGSGGSSVVAQDIRHKFLKVGIRCTVLLDADIQAMSASLLKKGDVAIGI 185 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG TK++ ++AR+N A VI LT+ A +P+ R A L I + E +R+ Sbjct: 186 SHTGSTKSVFHCLKMARKNGAYVILLTTQAKSPIGRIADLVIPVGSKETLFKSESTSARI 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 A+L V+D + K+ + + ++A E++F Sbjct: 246 AELVVMDAVLALAVSDDYKKYNVKITKTRDATSENKF 282 >UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Bacillales RepID=C6J1X3_9BACL Length = 289 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 145/275 (52%), Gaps = 7/275 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L + S LE LS ERK+ E IL SP IH I +A +S TV RFC++ +G Sbjct: 4 ILHAVSSHLETLSPQERKLGEYILESPATVIHQGITELANACGISPSTVTRFCKTFHFKG 63 Query: 63 FPDFKLHLAQSLANGTPYVN--RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 FPDFK+ LA LA+ P N +++ + ++ + + +A++ LD + ++R Sbjct: 64 FPDFKMKLASELAH-KPAENHYQDIIAGNDLQKIVEAMEANHLASITDTTRLLDMNQLSR 122 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+ L +AK+I +G+ +S+ VA D K R D +Q S + +GDV + Sbjct: 123 AVEALCRAKRIDLYGVATSSIVAQDFYQKLVRIGKNCTAFADSHMQITSASSLGEGDVAL 182 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G T ++ + A+++ A ++LT + LA A +A+ E+ M S Sbjct: 183 AISYSGETPETIDALRCAKDSGATTLSLTQYSSNSLASLADIALFSSSLEEGMRRGDMAS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 R+AQL VID+L TG +F+D + +++ + + Sbjct: 243 RIAQLHVIDILFTGMV---SLEFQDFIPKLESSYQ 274 >UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7S3_BREBN Length = 288 Score = 130 bits (326), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 139/249 (55%), Gaps = 2/249 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +Q+ L+ L SERKVA+ ILA P++ + S+ +A + VSE T+ R RS++ +G+ Sbjct: 9 LVGLQAILDQLKPSERKVADYILAHPEDVVKLSVQKLAEYSGVSEATIIRLARSLNMKGY 68 Query: 64 PDFKLHLAQSLANGTPYVN-RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + KL +A L T + + + + SVES + + + ++ L + +AV Sbjct: 69 QELKLRVAGDLTKQTARGSYQEIMMEGSVESIMQAVSWNNIQSIQDTLSVLSNEEVKKAV 128 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 D+L+ A+KI +G+G+SA +A D KF R N+ D Q S + ++ DVV+ I Sbjct: 129 DVLSVARKIDVYGVGASAVIADDIRQKFSRINLWCEAYSDFHAQLTSAVTLTEKDVVIGI 188 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRL 241 S++G+T+++++ A++ A +I LT G +P+A A + + E + M SR+ Sbjct: 189 SYSGQTEDIIQSLTEAKQQGATIITLTKFGPSPVAELANIRLFTSSVEKSIRSGAMASRI 248 Query: 242 AQLTVIDVL 250 AQL VID+L Sbjct: 249 AQLNVIDIL 257 >UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIQ0_CLOPH Length = 284 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 122/211 (57%), Gaps = 3/211 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + +I+S +KSE+ VA+ + +P+ +++SI +A V + TV RFC+++ Sbjct: 4 GIFARIESSYSKFTKSEKIVADFVFENPEKVLYTSITDLAEICGVGDTTVFRFCKALKLN 63 Query: 62 GFPDFKLHLAQSLA--NGTPY-VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ +FK+ LAQ +A G+ Y +N +V++DD +++ K +A L L+ A+ Sbjct: 64 GYQEFKMFLAQDIAVRTGSDYTINGSVSQDDDIQTICKKALAVDIAALTETFEGLNFEAV 123 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + VD+++ A K+ FFG+GSS +A +A KF R V + D +Q MS S D+ Sbjct: 124 TKVVDMISNANKVQFFGMGSSGVIALEAKMKFMRILPNVEHIADCHMQFMSAALLSSRDL 183 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT 209 ++ S++G TK+ +E+A LA+ N V+++T Sbjct: 184 AIIFSYSGSTKDSIEIANLAKSNGCKVVSIT 214 >UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=Bordetella bronchiseptica RepID=B3EUN5_BORBR Length = 303 Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 149/279 (53%), Gaps = 1/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L+++Q + LS +++ V VIL P A+ +++ +A +A VS PT+ R CRS Sbjct: 7 NLLQQMQERSPELSPAQKMVVRVILDDPQAAVLATVEQLAQKAGVSMPTIVRTCRSFGFV 66 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 DF + LAQS A + ++R+V DD V + K+ +A+++L + LD +++ Sbjct: 67 SVRDFMVALAQSYAATSSLLHRSVLADDGVADVSSKVIHAAISSLSELDRDLDVVILDKV 126 Query: 122 VDLLTQAKKIAFFGLGSSAA-VAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + + QA++I + +G+++ +AH+ ++ FR + D+ Q MS V Sbjct: 127 AERVAQAERIDCYSVGAASTFIAHELHSRLFRLGLRSNTFFDMHQQLMSASTLGAKGVAF 186 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +ISH GR +E A+ ARE+ A V+ALT GTPLA A L + + P+D + ++ Sbjct: 187 VISHVGRMPYTLEAARYAREHGATVVALTQPGTPLAAAADLVLAVSGPQDPLRRVGTETQ 246 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 LA L VI++L + G L+ K+ L++ D Sbjct: 247 LAHLVVIEILMVRLAQKLGPVAVHGLQGFKQLLQQHGLD 285 >UniRef50_A6DTP0 Putative transcriptional regulator, rpiR family protein (Fragment) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTP0_9BACT Length = 262 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 1/247 (0%) Query: 32 AIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSV 91 A ++SI MA +A VSE +V RF RS+ + PD K L S A G ++ +++ Sbjct: 6 AGNASIHDMAAKAGVSEASVTRFSRSVGCKNVPDLKKALVSSFAIGQRFLEGHMDPITEE 65 Query: 92 ESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKF 150 G++ + + L+ V + I + L+ + +++ FG G S +A DA+N+ Sbjct: 66 SGAIGQVVKGIIEALNTVNTQTSQQKIEQTASLVNELERVVVFGSGGGSTVIADDAVNRM 125 Query: 151 FRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS 210 FRF V + D ++QRM ++ +V++IS TG+ + E AQ+A++ A V+A+T Sbjct: 126 FRFGVNITSYGDFLMQRMVAATLNEDSLVLVISTTGQIAEINESAQIAKQYGAKVVAITR 185 Query: 211 AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 +PLA+ A + + + + ED IY SR A L VID +A + R ++ L+R+K Sbjct: 186 GDSPLAQLADIHLEVHIQEDEGIYKATASRYALLAVIDAIALELAVLRKDSSKETLRRIK 245 Query: 271 EALKESR 277 L R Sbjct: 246 YNLDAVR 252 >UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oeni RepID=Q04DU1_OENOB Length = 282 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 149/280 (53%), Gaps = 1/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ E I+S E L E+++A+ IL+ D+ + ++I +++ + +S +++RF R + Sbjct: 3 NVTETIRSYYEKLHPGEKRIADYILSHQDSVMDATIQSLSDKIGISTASISRFTRHLGYP 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F DF + L+ S N + + + D E K+F + +A L +++ ++R Sbjct: 63 NFRDFLIALSASKKNSSSDFFTEIKQSDQSEQIVKKLFSAGIAALTATAANINMKDLDRV 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L + KI FFG+G S+ VA +A +KF R N+ +V D +Q M + + D+ ++ Sbjct: 123 VDWLVSSNKIGFFGIGGSSIVAFNAYHKFLRTNLNIVSHPDYDIQIMQAAHLTSEDLGIV 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+GR ++ + + REN + ++A+T+ +P+A+ A + + E M S Sbjct: 183 ISHSGRNQDTLLVENKLRENGSKIVAITAFPESPIAKNADIVLNSYSEEVNFRQESMSSL 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +AQ+T+ID L T R + + ++ ++++R K Sbjct: 243 VAQITIIDTLFTLVGHRLNEQTDQVINSMRRVIEQTRVRK 282 >UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=A0JVW9_ARTS2 Length = 309 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 147/290 (50%), Gaps = 14/290 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L +I +L +L S R+VAE +L SP+ A +I+ +A+ A V E TV+RF + + Sbjct: 9 GLLHRISGRLPYLPPSLRQVAEAVLKSPEQAQTMTISELAVAAGVGESTVSRFVKELGID 68 Query: 62 GFPDFKLHLAQSL----------ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRH 111 G+ L LA++ + V VN D+ GK+ S++ +L Sbjct: 69 GYKSMLLGLAEATFISKAATSARTADSEVVYEGVNRGDTAAEIAGKVERSSVQSLRRTGQ 128 Query: 112 SLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCM 171 D AI RAVDL+ + + F +GSS+ A +A+ +F R + D +Q M Sbjct: 129 RQDVEAIQRAVDLIDASNTVIFSCMGSSSIAAEEAVMRFTRAGKKCMLYRDTTIQVMLAA 188 Query: 172 NCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAI-TLDVPE 229 GD+++ IS +GR+ +++ LAR+ A IA+T A G+PL A + + T VP Sbjct: 189 IIEPGDLLIGISDSGRSTPIIDAMHLARQRGAATIAITGAEGSPLRNYADVVLYTATVPS 248 Query: 230 DTDIYMPMV-SRLAQLTVIDVLATGFTLRRGAKFRDNLKRV-KEALKESR 277 ++Y V S+ QL VID+L + R ++LK+ + A+++SR Sbjct: 249 GGELYGESVTSKWGQLLVIDILYATYASRHYDATVEHLKQTYQSAIRQSR 298 >UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPL3_9FUSO Length = 285 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 147/277 (53%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 NM I++ LSK E+ +A+ IL + + + + +IA +A V T+ F + + + Sbjct: 5 NMKFTIKTIYNDLSKKEKLIADYILKNINKSTNLTIADLAENIGVVNSTIFSFTKKLGFK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +F+ L + N V+ ++++DS+ S K+F S + +L+ + +K + + A Sbjct: 65 GFREFRDSLLRDQFNSNINVHEKISKNDSITSIIEKVFNSNIKSLEDTKKIAEKKSFSTA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + +LTQ + FFG+G S+ +AHDA +KF R + + D LQ M + D + Sbjct: 125 LKILTQVDIVHFFGVGGSSVIAHDAYHKFLRSPLKCRFDSDFHLQLMQASLLTKNDCAFI 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G TK +E+A +A+E A +I LTS + LA++A + E + SR Sbjct: 185 ISHSGMTKESIEIADIAKERKAKIIVLTSYPLSILAKKADITFISTAEEIEYRSEALSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL+++D + L K + +L +++ + +++ Sbjct: 245 IAQLSILDTIFILVMLNNPTKTQISLNKIRTTIAKTK 281 >UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C77F Length = 277 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 131/263 (49%), Gaps = 1/263 (0%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 L+++E+++A+ I+ P+ + S + + + S V RF + + GFP K+ LA+ Sbjct: 12 LTETEKEIAQYIIEHPEQVLDDSAMKLGEKTHSSSAAVVRFAKKLGYSGFPQLKIELAKD 71 Query: 74 LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAF 133 L P V+ ++ D+ + + K+ S + T+D H L S + V L QAK + Sbjct: 72 LVGSIPEVDNLLHPDEDMATLMNKVHHSQIVTIDKTYHLLSASTLEDVVKALEQAKHVYL 131 Query: 134 FGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVE 193 FG+G SA V D ++K R + D+ LQ S N ++ D+ + +S++G TK +V Sbjct: 132 FGVGGSAIVCDDFIHKLMRIGKYACFYPDVHLQMTSVPNMTEEDLAIFVSYSGETKGIVT 191 Query: 194 LAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLAT 252 A+ A+E + +A+T SA L + +T+ E + M SR + L V+D+L Sbjct: 192 AAKWAKEMNIPSVAITQSAYNKLGKLVDHVLTIPSQEQSLRIGAMSSRYSSLIVVDLLYY 251 Query: 253 GFTLRRGAKFRDNLKRVKEALKE 275 G R K+ + + ++E Sbjct: 252 GLVKRNKEKYAQKIINTRRIIQE 274 >UniRef50_P26833 Uncharacterized HTH-type transcriptional regulator CPE0189 n=15 Tax=Clostridiales RepID=Y189_CLOPE Length = 279 Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 142/258 (55%), Gaps = 9/258 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +LE++++ +KSE+ + E I + DN I+ SI+ +A E+ V E T+ RF + + Sbjct: 1 MGILEQLENPKFKATKSEKTLIEYIKSDLDNIIYKSISIIAKESGVGEATITRFTKKLGF 60 Query: 61 RGFPDFKLHLAQSLAN--GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF DFK+ LA+ ++N T +N +V+ D+SV K+ +S++ L+ +D + Sbjct: 61 NGFQDFKVTLAKEISNKKNTSIINLHVHRDESVTETANKMLKSSINILEQTVKQIDLDLM 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFN---VPVVYSDDIVLQRMSCMNCSD 175 + DL+ AK++ F G+G S A D KF R VPV S +V+ MS + +D Sbjct: 121 CKCRDLIMNAKRVYFIGIGYSGIAATDINYKFMRIGFTTVPVTDSHTMVI--MSSI-TND 177 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 DV+V IS++G TK +++ + A+EN +I LT + PL + + +T E Sbjct: 178 DDVIVAISNSGTTKEVIKTVKQAKENGTKIITLTEDSDNPLRKLSDYELTYTSAETIFET 237 Query: 235 MPMVSRLAQLTVIDVLAT 252 + S++ Q+ ++D+L T Sbjct: 238 GSISSKIPQIFLLDLLYT 255 >UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=Firmicutes RepID=A6LVH8_CLOB8 Length = 282 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 149/271 (54%), Gaps = 4/271 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI+S LS E+ +A+ IL +P + H+SI+ ++ E NV++ T+ +F + + GF + Sbjct: 8 KIKSLYNGLSAKEQNIADYILENPISVAHNSISYLSDELNVADSTLFQFAKKLGYSGFKE 67 Query: 66 FKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 FK+ + N T ++ + DD+ + K+F+S + TL + + L + +A ++ Sbjct: 68 FKMAILIEENNFSTTSIHEKIEIDDNELTMAQKVFDSNIKTLTNTKKILGLDDLKKAAEI 127 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 ++ + + FFG+G S +A DA +KF R V +S D +Q M + D + ISH Sbjct: 128 ISNSNLLYFFGVGGSGILAEDAYHKFLRSPAHVRHSTDYHIQLMEASLLTPQDCAICISH 187 Query: 185 TGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM-PMVSRLA 242 TG++K + +A++ +E A VI +TS A +PLA+ + + + + E+ + + + SR++ Sbjct: 188 TGKSKETIRIAEIVKEAGAKVIVITSHASSPLAKIGDV-VFISISEEIEFHSEALSSRIS 246 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 QL+++D L K ++ L +V+ + Sbjct: 247 QLSILDSLYVILMFMNKEKSKEALSKVRRTI 277 >UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8M2_9ACTN Length = 291 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 137/257 (53%), Gaps = 4/257 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +++ + L+ +E+ VA +L P + S+ A+A + VS V R C+S+ Sbjct: 3 NIIIRLRENIGFLNPAEKAVARYVLQCPHESNRLSVKALAARSFVSPAAVVRMCKSIGFE 62 Query: 62 GFPDFKLHLAQSLANGT---PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF +FK L + LA P +++ ++D++ES KI + +L +D I Sbjct: 63 GFKEFKTELTRELATEKLILPLDTKDIKQNDTLESIIKKITLKNIHSLYDALRLIDPETI 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV+LL +I FGLG+S A DA KF R N + +DD LQ ++ N + DV Sbjct: 123 EKAVELLQACDRILLFGLGASLIAAKDANLKFLRVNKTCLINDDWHLQLITARNSTSQDV 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 ++IS++G+T + A++ + N+ +IA+T +P+++ A + + E M Sbjct: 183 GIVISYSGQTAETLTCAEILKHNNTPIIAITRCIESPISKLADVLLYTTSNESLFRSAAM 242 Query: 238 VSRLAQLTVIDVLATGF 254 SR++QL +ID+L T F Sbjct: 243 SSRISQLNIIDILYTAF 259 >UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF6_9LACT Length = 292 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 150/279 (53%), Gaps = 7/279 (2%) Query: 2 NMLEKI-QSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 N LEK+ + ++ + +E+ +A+ + + ++ +++ +A + +SE T+ +F + + Sbjct: 4 NYLEKLLRPYIKSFNDTEKIIADHFIKLGHDVVNKTLSNLADDTGLSEATIFKFVKKIGF 63 Query: 61 RGFPDFKLHLAQSLANGTPYVNR-----NVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 GFP+FK+ +A + N N +++++DS + K+ S LD++ SLD+ Sbjct: 64 DGFPNFKISVASNFQNIEERKNELTVFSDISKEDSSYAIAQKLVYSNKLALDNLIGSLDE 123 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 IN+A++L+ ++ I FFG G+S+ +A D+ +KF R Y D +Q Sbjct: 124 ERINQALNLIYDSQTIHFFGQGASSVIALDSYHKFLRTRFLCNYISDYHMQLSYATKLGP 183 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 D V L SH+G T +E+A++ R N +I LT + T L + ++++ +D E Sbjct: 184 NDCVFLFSHSGETNETIEVARILRNNQVNIIVLTGNHHTDLVKLSSISFVVDSEESAFQS 243 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 + SR+ LT+ID+L AK +D+L+++++AL Sbjct: 244 ETLTSRILYLTIIDILYVALMYHDEAKNKDSLEKIRKAL 282 >UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7K6_PAESJ Length = 284 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 136/260 (52%), Gaps = 3/260 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++ I S + +E+K A+ IL D ++ SI +A V E ++ RFC+++ Sbjct: 4 ISITSTIHSHYNRFTATEKKTADYILEHADAVVYMSITDLAEGCGVGEASIFRFCKALGF 63 Query: 61 RGFPDFKLHLAQSLA--NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G+ FK+ LA S++ N P ++ V D++E K +S + L+ + +I Sbjct: 64 KGYQQFKIALAHSISADNEIPQLSGQVKIQDTLEDAVSKTLQSNINALNETFKLIQLDSI 123 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 NRA+DLL ++ + F+G+GSS A +A NKF R S D Q MS + DV Sbjct: 124 NRAIDLLIRSDRFIFYGVGSSLMTAMEANNKFMRITNKTGCSVDSHQQAMSAALMGERDV 183 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 ++IS++G TK+ +E+A+ A+E A +I +T +PL + + + E + Sbjct: 184 AIIISYSGSTKDSIEVAKKAKERGAAIIVITRFVKSPLTSYSDITLLCGANEGPLQGGSL 243 Query: 238 VSRLAQLTVIDVLATGFTLR 257 +++AQL ++DVL + R Sbjct: 244 SAKIAQLYLLDVLYVEYFKR 263 >UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=Q2G836_NOVAD Length = 296 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 140/279 (50%), Gaps = 3/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L +I+S L +SK+ K+A ++ P + + SI +A + SE +V FCRS+ Sbjct: 19 NALTRIRSALPQMSKTAAKIAAYVVEHPADVVGMSITDLAALVDASEGSVINFCRSIGLG 78 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF KL LAQ + +++ ++ +DS E+ K+F S + L LD A+ A Sbjct: 79 GFQHLKLSLAQEIVQPVHFIHEDLEREDSTETVCRKVFHSGIQALRDSLSVLDPKAMAAA 138 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD++ A+++ +G+GSSA +A DA + R + D +Q +S C D DV VL Sbjct: 139 VDIIRAARRVEIYGIGSSAPIAEDAHYRLLRIGLDARVVIDSHVQAISASRC-DKDVAVL 197 Query: 182 -ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+G T V +LA E A I +T+ G +P+ A + + E M S Sbjct: 198 TISHSGSTNETVAATRLAHEAGARTIVITNFGRSPIQAYADVVLFTMARETRFRTEAMTS 257 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+AQL VID L L + D LK+ + L RF Sbjct: 258 RIAQLCVIDALIAALALADYDRSTDVLKQTFDVLSIKRF 296 >UniRef50_A4CAD1 Transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CAD1_9GAMM Length = 283 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 152/278 (54%), Gaps = 6/278 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +I+ +L HL +SE+ VA++IL + A +SI +A ANVS ++ R +++D Sbjct: 1 MDIVSRIKERLGHLRQSEQLVAQLILENLQFAASASIGELAQRANVSHASITRLAKALDC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 D KL LAQSLA G +++ N ++ + + + I+++ A LD + ++ + Sbjct: 61 DNVRDMKLQLAQSLAVGERFISENNSQREDIPA----IYKAIHAILDLNAGLIAQTQVEE 116 Query: 121 AVDLLTQAKKIAFFGL-GSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A + ++ FG+ G S+ VA + N+ FR +V D V+ RM+ + DVV Sbjct: 117 AARCIASSRHTLIFGVGGGSSVVAQECHNRLFRLDVLSNAYSDPVMMRMTAASVDVCDVV 176 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 V++S TG ++L++ A +A++ A VIA+ + LA AT + + E I+ P + Sbjct: 177 VVLSLTGLPQDLIDAASIAKDYGAKVIAICP-DSALADVATFHLPIKTNESDYIFTPSTA 235 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R A L +DVLA+ + K R+ L+R+K L E R Sbjct: 236 RYAMLAAVDVLASEVAILTQKKSREKLRRIKHELDEYR 273 >UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Actinomycetales RepID=A4F6M8_SACEN Length = 308 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 6/280 (2%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+S L L+++E++VA ++LA P + SI +A A SE TV RFC+++ G+ Sbjct: 16 LIRIRSLLPGLARAEQRVANIVLADPASVARRSITEVAEAAGTSETTVTRFCKAIGVGGY 75 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA----MATLDHVRHSLDKSAIN 119 PD ++ LA A T +R++ D E KI E ++ LD + Sbjct: 76 PDLRIALAADTAR-TSSRDRDLGSDIGPEDDVRKIIEKVSYADAKAVEETADQLDAETLR 134 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 VD + +A++I +G+G+SA VA D K R + D S +GDV Sbjct: 135 SLVDAVARARRIDVYGVGASAFVALDLQQKLHRIGLTCFAWSDTHNALTSAAVLREGDVA 194 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 + ISHTG T VE Q A + A ALT+ A +P+ A +T V E T M Sbjct: 195 IGISHTGATTETVEALQEAGKRGATTAALTNFARSPITEVADHVLTTAVRETTYRSGAMA 254 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+ QLTVID L G R + + L+ EA+ R Sbjct: 255 SRIGQLTVIDCLFIGVAQRHLDQTKAALEATYEAVGAHRL 294 >UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQA6_9CLOT Length = 290 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 5/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M E+IQ+ LS + +K+A+ ++ PD A+H ++ +A VSE +V RFC+ + Sbjct: 12 MGCTERIQATYSALSGASKKIADFVIDHPDQAVHMTVVQLAESCEVSEASVVRFCQCLQY 71 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL LA + + + ++ +D+ + K+F L L++ Sbjct: 72 AGFYEFKLSLAAEIVPASQMIQEDITVEDTEPTILEKVFAGEQQALQETLQMLNRQDFIS 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVP--VVYSDDIVLQRMSCMNCSDGDV 178 AV+ + + K+ FF G++ +A DA + R + + D L S + GDV Sbjct: 132 AVNHIAFSNKVEFFSCGNARPIAQDAHYRLLRTGIDSRIGIDDYDCLIHASMLR--TGDV 189 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 + ISH+G TKN +++ + A++N A I +T P+ R + + + E M M Sbjct: 190 AIGISHSGSTKNTIKMLEEAKKNGATTICITGMEKAPITRVSDICMVSHSKETMFRSMAM 249 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR+AQ+ +ID L + +R + + L + L E + Sbjct: 250 ASRIAQMAIIDALVVAVSFKRFERSKQYLTLTDKILVEDK 289 >UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=Gammaproteobacteria RepID=A0KFB6_AERHH Length = 286 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 138/266 (51%), Gaps = 8/266 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L KI + LS SE K+A+ ILA P+ H S +A +A+VS+ ++ +F + + Sbjct: 1 MLTLSKISNIRSQLSPSELKIADYILACPEQVTHFSSQELAQQADVSQSSIVKFTQKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNE-------DDSVESYTGKIFESAMATLDHVRHSL 113 +GF FKL +++ L NV + DD +E+ K+ + + ++ +L Sbjct: 61 KGFTAFKLAVSEDLGRKHAIKTDNVGDLYNGIGRDDDLETMAKKLAQEKINSIVETTQAL 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + R +D++ QA ++ G+G SA A D K + V +++ D +Q Sbjct: 121 DNATLARVLDVINQAGRVQLVGIGGSALTAKDLWYKLLKIGVTTLFAQDSHVQISIAQTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTD 232 GDV +++S++G +++++ A+LA+ N A +IA+TS TPL + A + + E+ Sbjct: 181 GPGDVQLVVSYSGASRDVLAAAELAKRNGATLIAVTSFRNTPLRQMADMVLDTVADENEL 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRR 258 + SR AQ T+ D+L G RR Sbjct: 241 RISSISSRTAQNTITDILFLGLVQRR 266 >UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=Bacteria RepID=D1AUV3_STRM9 Length = 272 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 8/262 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + IQS SK E KVA+ ++ D + + + NVSE T+ RF + + Sbjct: 1 MKYITLIQSFYPSFSKQEIKVADYVIKEKDAICFMPLHEITKKINVSEATIVRFVKKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GF DFKL +A+ +A +E ++ E Y I + + T+ + ++ ++K + Sbjct: 61 KGFIDFKLEVAREIATIE-------DERNTKEHYIENIEYNIIETIKNTKNLINKEDVEN 113 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A++ + +KK+ FG+G+S A + N+F RF D Q M ++ DV+V Sbjct: 114 AIEAIENSKKLYVFGMGASGVAALEFQNRFMRFGKIGHSVSDGHFQVMYASTTTEKDVIV 173 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 +IS +G T +L+ +A+EN +IA+T+ +P+A+ + + I E +VS Sbjct: 174 VISLSGETVDLIYPLSIAKENGCKIIAITNYILSPIAKLSDIVILTSGKETLLNGGALVS 233 Query: 240 RLAQLTVIDVLATGFTLRRGAK 261 +++QL +IDVLATG+ LR K Sbjct: 234 KMSQLYIIDVLATGYALRNSKK 255 >UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment) n=3 Tax=Lactobacillus RepID=C2D3P4_LACBR Length = 281 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 143/277 (51%), Gaps = 4/277 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 ++ ++ ++LS++ +K+A+ ++ +P A ++I +A S +V+R +++ F Sbjct: 5 VQMLKQSFDNLSRTNKKIAKYVIDNPQAASEANIEDLAAVTETSTASVSRLVKTLGYSNF 64 Query: 64 PDFKLHLA--QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 +F L LA Q P + ++++ +D++ + KIF S+ L R +D++ R+ Sbjct: 65 REFTLSLAYTQLRPQNLP-IFKDIDANDTLSTIADKIFTSSQRALQDTREGIDENEFARS 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V + +++ FFGLG S+ A D +KF R ++ Y D +Q M + + D ++ Sbjct: 124 VLRIIHCRRLGFFGLGGSSVAALDGYHKFLRTSIDCFYYPDFDVQLMQAVKLGEDDCAIV 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH+G+ + +++A+ + VIA+TS +PL + + E M S Sbjct: 184 VSHSGKNRQTIKIAETLKRRKVPVIAITSYQDSPLVGHSDITFISSSDESNYRSEGMYSL 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 LAQLT+ID L T+R G D ++ V+ ++ +R Sbjct: 244 LAQLTIIDTLFMMATVRMGPATEDTIRSVQNIIESTR 280 >UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI47_9CLOT Length = 285 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 147/275 (53%), Gaps = 2/275 (0%) Query: 6 KIQSQLEHLSK-SERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 ++QS L ++K +E K+ E I + IH S+A A VSE + R+ + + +G+ Sbjct: 11 RVQSILPSINKKNEMKIYEFIEINRKEIIHMSVADAAEACGVSEAAIVRYAQKLGYKGYQ 70 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 K+ +AQ + + +++ D++ + KIF+S + +L L + I+ AV+L Sbjct: 71 AMKISIAQDVIEPGQQIYGQLSKGDTIPTIVDKIFDSNIQSLRDTSDVLSRENIDEAVNL 130 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + +++ FFG+G S VA D +KF + + D LQ M+ + DV+V +SH Sbjct: 131 ILGCRRLLFFGVGGSGCVAMDGQHKFLKIGYMAMAFTDSNLQAMAASVLTSRDVLVAVSH 190 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G +K+++ +A+++ A IA+T+ G +P+ +A + + E + SR+A+ Sbjct: 191 SGASKDILMAMDIAKQSGAKTIAITNYGKSPIVEKADVVLYTSSNETAFNSDALSSRIAE 250 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 LT+ID+L G + +R + N+ + ++AL ++ Sbjct: 251 LTIIDMLYIGVSYKRYDESYANILKTRKALDSTKI 285 >UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EB66_BRASB Length = 270 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 129/271 (47%), Gaps = 5/271 (1%) Query: 11 LEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHL 70 L L R++AE+I A P+ +H SI +A +VSE T+ FCR + RGF + K+ L Sbjct: 2 LPELPPKARQIAELIAAQPEPFVHKSITEVAEACDVSEGTIVSFCRRVGVRGFQELKIML 61 Query: 71 AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKK 130 A+ L + +++ D + T IF + A+L R L A+ A LL +A++ Sbjct: 62 ARDLIEPVRLIQEDLHRGDDPATVTDHIFAAHAASLQETRRLLSMEALAEATRLLREAQR 121 Query: 131 IAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKN 190 I +G+GSSA +A D + + + D +Q +S G V +SH+G T Sbjct: 122 IEIYGIGSSAPIAQDLSYRLLQLGLAANAIVDSHVQAVSAGMTGPGVATVTVSHSGSTVE 181 Query: 191 LVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMP--MVSRLAQLTVI 247 V +LA+ A I +T G +PLA A + L + Y P M SR+AQL +I Sbjct: 182 TVLATRLAQAAGARTIGITRLGKSPLA--AHCEVLLYTVANETRYRPEAMSSRVAQLAII 239 Query: 248 DVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 D L + L + L+ L E R+ Sbjct: 240 DTLVSCCALTDTERSVGRLQHAARILSEKRY 270 >UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J4B4_9BACL Length = 288 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 8/258 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L KI+ E+L+ ER VAE ILA+ ++ H SI ++A + S+ +V RFC++M Sbjct: 7 NILIKIRDMKENLTPVERMVAEYILANTEDIPHLSIKSLAKLSKTSDASVLRFCKTMGYS 66 Query: 62 GFPDFKLHLAQSLAN-----GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ F + ++ +L + Y ++ D +++ I + M +++ LD+ Sbjct: 67 GYRSFIVSISAALGSMDDERKDQYT--DIQPGDDLDTIIANISRNNMKSIEDTLSVLDRG 124 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + RAV L + +I FFG+G+S V D KF R N D Q + G Sbjct: 125 EVARAVKALRASNRIVFFGIGASGLVCQDGEQKFSRINKMCHSYTDGHSQLTAATLLGKG 184 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYM 235 DV + +S++G T ++E ++A++N+A +A+T + LA +A + + + PE T Sbjct: 185 DVAIFVSNSGNTLEIIETLEIAKKNNATTVAITKYNKSELADKADILLGISTPEITMRSG 244 Query: 236 PMVSRLAQLTVIDVLATG 253 M SR+A LT+ID+L G Sbjct: 245 AMGSRIAMLTIIDMLFAG 262 >UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCR9_9FIRM Length = 289 Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 146/282 (51%), Gaps = 12/282 (4%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I+S + LSKSE+K+ IL P + S +A++ ++SEPT+ RF R + +G Sbjct: 6 ILTRIESLMPFLSKSEQKLGNYILTHPKDVTDMSTSALSQACDISEPTLIRFTRRLGFQG 65 Query: 63 FPDFKLHLAQSL----ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + DFKLHL+ + + TP V N+N D ++E Y K+ + +L+ ++LD + + Sbjct: 66 YKDFKLHLSANFISNQIDSTP-VKVNLN-DSAIEIYR-KLASFTINSLNSTLNTLDANDL 122 Query: 119 NRAVDLL----TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 A + + Q +KI G+G+S + H+ K R N+ ++ +DI L+ +C N Sbjct: 123 ENATNYIYVAAKQNRKIFLSGMGASTVLIHEFQIKMMRLNIQTIFFEDIHLRLEACANLK 182 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDI 233 D+ + + G +K EL +A E A +I +T G + +A +A +A+ + E+ Sbjct: 183 KNDLFICFTTLGASKENYELIDIAHERKAKIIVITQFGNSQIAEKADIALYTSIIENNLR 242 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 S + Q VIDVL + A +++K +E K+ Sbjct: 243 LASQTSIILQSMVIDVLFLTIACKDYASITNSVKDFREKFKQ 284 >UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I531_9CLOT Length = 284 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 138/251 (54%), Gaps = 16/251 (6%) Query: 13 HLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQ 72 L+K+E K+ + I +++I+ ++ +A V E TV RFCR + R F +FK+ +AQ Sbjct: 11 ELTKAENKICDYIEEYMNSSIYMTVTEIANNCGVGEATVTRFCRKLGFRSFLEFKMTMAQ 70 Query: 73 SLANGTPYVNRN------VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 N + Y N + V+E+DS+ + K +E + +L+ +D S I D+L Sbjct: 71 EFKN-SGYDNEDIIESEVVSENDSLGEFVKKFYEINVNSLEETLKKIDYSMIEEISDILV 129 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPV-VYSDDIVLQRMSCMNCSDGDVVVLISHT 185 +AK+I+F G+G S +A DA KF + + Y D L M+ + +GDV+ +IS++ Sbjct: 130 KAKRISFTGVGHSGIIAEDAYYKFMKIGLICNCYRDSHTLVMMASL-MKEGDVLFIISNS 188 Query: 186 GRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVS---RL 241 G T+ + A++AREN+ VI++T + + LAR + + D +I + M S R+ Sbjct: 189 GNTEEINIAAEIARENNVKVISITENLLSKLARVSDYVLNYT---DQEIKIDMESFGIRI 245 Query: 242 AQLTVIDVLAT 252 +Q +ID++ T Sbjct: 246 SQNFLIDLICT 256 >UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulator CA_C0191 n=5 Tax=Clostridia RepID=Y191_CLOAB Length = 283 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 145/277 (52%), Gaps = 10/277 (3%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+ + L+ SERK+AE IL + SI +A ++ S+ V R C+ ++ +G+ Sbjct: 5 LIRIKEIINDLNPSERKIAEYILNNSKAISDLSIKELAGKSGSSKSAVVRLCKILNYKGY 64 Query: 64 PDFKLHLAQSLANGTPYVNR--NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 +F++ +A+ N NR ++N D + + I + ++D+ L + + +A Sbjct: 65 KEFRIAIAKDTVNVDKEENRYTDINPKDDLHTIIKNISYNNKKSIDNTMEVLSEELVEKA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + +++A ++ F+G+G+S VA DA KF R N V + D LQ N GDV V Sbjct: 125 SEAISKAYRVDFYGIGASYIVAMDAFQKFMRINKNVRATPDTHLQVEFASNLKKGDVAVA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS+TG TK+ E + A+E A I++T G+ ++ + + + PE T M SR Sbjct: 185 ISYTGETKDTFESIKAAKEAGATTISVTKFGSNSISDLCDINLFVLSPEITFRSGAMSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL VID+L FT G F + VKE L+ +R Sbjct: 245 IAQLNVIDIL---FTSVAGRMFEE----VKEFLENTR 274 >UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulator ybbH n=7 Tax=Bacillaceae RepID=YBBH_BACSU Length = 283 Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 12/282 (4%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L IQS L SERK+A+ ILA P AI S++ ++ AN S+ V R C+S+ +GF Sbjct: 6 LAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGF 65 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K+ +A LA T R++ + + S + K +A+ + +D + RAV Sbjct: 66 QDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVS 125 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 LL +A + F GLG+S VA DA K+ R + D L N D+V IS Sbjct: 126 LLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAIS 185 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVP-------EDTDIYMP 236 +G T+ +VEL +A+E I+LT + +++ DVP E Sbjct: 186 FSGETQEIVELFAMAKEKGITTISLTQFS-----QTSVSALADVPLYTAHSNEALIRSAA 240 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SRLAQL +IDVL G + + + + A++ R Sbjct: 241 TSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRI 282 >UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6X6_RUMHA Length = 297 Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 128/241 (53%), Gaps = 3/241 (1%) Query: 12 EHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLA 71 EH K+ERK+A +L + D ++HS++ +A E VS+ ++ RFC+S+ GF ++K++ A Sbjct: 30 EHTKKTERKIAAYLLGNFDKSLHSTLLELADEIGVSDASIVRFCKSIGYTGFQEYKINAA 89 Query: 72 -QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKK 130 QS+ Y N +++ DD+ KIF + L+ + LD S +N+ D+L +A++ Sbjct: 90 LQSVPEPRLY-NPSLSVDDNPAEICDKIFAIESSALEQTKQELDISVMNKVADVLLKARR 148 Query: 131 IAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKN 190 I G G SA A D +K + V +D LQ MS ++ DV+ ISH+G + Sbjct: 149 INLVGTGGSAISARDFQHKLLKIGVRAELQEDKDLQLMSASLLTEEDVLFAISHSGSNLH 208 Query: 191 LVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS-RLAQLTVIDV 249 + E +LA++ +A +I LT + E V E T S RLAQL ++D Sbjct: 209 VAETIELAQKRNAKIITLTMKSKNILVEKADYPLYVVSEKTIFESESFSARLAQLAMLDC 268 Query: 250 L 250 L Sbjct: 269 L 269 >UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillaceae RepID=Q03CI3_LACC3 Length = 280 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L ++Q +LS E+K+A + A PD+A ++I+ ++ VS T++RF +++ Sbjct: 3 DFLVQLQIYKPNLSGQEKKLAAYLQAHPDHASQANISELSQLTGVSTATISRFAKALGYT 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F ++ LAQ+ + ++ DSV++ KIF S + L +LD A+ +A Sbjct: 63 NFQALRMALAQTSPEDDHALFAELSPKDSVDTLAQKIFTSNIDALRTTLANLDTDALTKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V +T A+ + FGLG+S VA D +KF R +PV Y+ D +Q M+ + D ++L Sbjct: 123 VKWITHAEHLGLFGLGASNLVALDGYHKFLRTAIPVAYAADYHMQLMAATHLGPRDAMIL 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLA 222 SH+G K+ + LA+LA++ +I +T G+P +R +A Sbjct: 183 TSHSGEDKDAIALAELAKKQQVPLIVIT--GSPTSRLVKMA 221 >UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C6WFA6_ACTMD Length = 304 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 5/255 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L KI+S L L+++E++VA+V+L +P H SI +A A SE TV RFC+++ G+ Sbjct: 11 LVKIRSLLPGLARAEQRVAKVVLDNPATVAHRSITEVAESAGTSETTVTRFCKAIGVGGY 70 Query: 64 PDFKLHL----AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 P+ ++ L A++ A + ++ D + GK+ + ++ L+ + Sbjct: 71 PELRIALAADTARTAARTDRDLGGDIGPGDDLRQVVGKVAFADARAVEETAEQLNVDTLQ 130 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 VD + +A ++ +G G+SA VA D K R +D + S + DV Sbjct: 131 AVVDAVARAGRVDVYGFGASAFVAFDLQQKLHRIGRTCFAWNDTHIALTSAAVLTGADVA 190 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 V ISHTG T VE ++ARE A +ALT+ +P++ A +T E T M Sbjct: 191 VGISHTGSTTETVEALRVARERGATTVALTNFPRSPISEVADHVLTTAARETTFRSGAMA 250 Query: 239 SRLAQLTVIDVLATG 253 SR+AQLTV+D L G Sbjct: 251 SRIAQLTVVDCLFIG 265 >UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=Proteobacteria RepID=A9IGF4_BORPD Length = 307 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 152/290 (52%), Gaps = 10/290 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM--- 58 +++ +I+S+ + LS +ERKVA+ IL A +++ +A +A VS T++RF RS+ Sbjct: 24 DIVYQIRSRRDALSATERKVADAILDDIAAAAGATVDQLADKAGVSIATISRFARSVGCD 83 Query: 59 DTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 DTR D KL LAQ+ A G +++ + E+ ++ +++ ATL ++ Sbjct: 84 DTR---DLKLKLAQASAVGERFLDPSTPEE---STFYARLYADIEATLRAHLPRFSEALF 137 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAV-AHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +A ++ +A+ FG+G ++AV + + ++ R V D VL RM + D Sbjct: 138 EQAAGIVREARMTYVFGMGGASAVLSQELQSRLVRLGYAVAAYSDAVLLRMVAATLDERD 197 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPM 237 VVV++S +G T ++ ++ ++ A ++ LT +PLA A + + + E IY P Sbjct: 198 VVVVLSTSGLTPEILAGTRIVKQYGARIVTLTDPASPLAGLADVVLPIHTAETDFIYKPS 257 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 SR A L ID+LAT L R ++ L+R+K AL E R L L D Sbjct: 258 SSRYAMLLAIDILATELALARQEATQERLRRIKLALDEYRGGPNRLPLGD 307 >UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=1 Tax=Listeria grayi DSM 20601 RepID=C2C2H3_LISGR Length = 282 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 140/273 (51%), Gaps = 3/273 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I++ + L KSE+KVAE++L P A SSI ++A A+ S + RFC+S+ + Sbjct: 5 SILNRIETLFKDLPKSEKKVAEMVLQDPAFASASSIHSLAKRADTSAAAIVRFCKSLGLK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FPDFK L L++ + ED+S + + K+ + TL+ + ++ I Sbjct: 65 SFPDFKRQLYSELSSPVASGYYDFEEDESFDGISQKLLANYFQTLNDTAGQISEAKIRTV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L +A I +G+G+S VA D K+ R VV S D + M+ G V Sbjct: 125 SEQLEKADTIYTYGVGASWLVAQDIAQKWLRAGKQVVISQDEHVLAMAFAARKSG-VFFA 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAI-TLDVPEDTDIYMPMVS 239 +S++G T +++ELA+ A++N+ VI LT G + L +A + T PE S Sbjct: 184 VSNSGETTSVIELAEQAKQNNLTVIGLTRFGPSKLKAKADFLLETSRAPEAKFRSTATSS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 + AQ +IDVL + R + + ++ ++A Sbjct: 244 KQAQFFIIDVLYYHYVSRHYDQMIEQIRESRQA 276 >UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YX9_LACSS Length = 280 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 140/273 (51%), Gaps = 4/273 (1%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 ++S ++ S+ +++A+ I +I A VS T++RF + + F F Sbjct: 9 LRSYYDNFSEKYKQIADYIFQESQFNQRLTIQEFAANCGVSTATISRFAKILGFDNFQAF 68 Query: 67 KLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 K+ L AN +P + +N +D+ + KIF S L L + + +AV L+ Sbjct: 69 KMALLAKEANTSPLFHE-INANDTFTTMAEKIFSSNSNALKATWSLLTEEQLQKAVALIN 127 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 +A ++ FGLG+S VA D +KF R ++P V++ D LQ M ++ D ++ISH+G Sbjct: 128 RAHLLSLFGLGASGIVAQDGYHKFLRTSIPTVFNQDYHLQLMQATKLTNQDCAIIISHSG 187 Query: 187 RTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRL-AQL 244 + K+ +ELA++ +E +I +TS G + LA+ + + L + E+T+ + L AQ+ Sbjct: 188 QNKDALELARILKERQVPLIVITSFGNSSLAKLGDITL-LSISEETNYRAEALHALIAQI 246 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++ID L + G + + K ++ + +R Sbjct: 247 SLIDSLFMMVAVNNGQETEQSFKEIRAEIDRTR 279 >UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=Bacteria RepID=A6LRF3_CLOB8 Length = 294 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 143/285 (50%), Gaps = 9/285 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI++ L SE+KVA+ +L + + ++A ++ + VSEPT+ RF +S+ G+ + Sbjct: 10 KIKNMYNLLRSSEKKVADYVLLNGHSVSTMTLAELSRQVGVSEPTIIRFVKSIGCSGYSE 69 Query: 66 FKLHLAQSLA--------NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 FK+ L + + V +++ D+ +E K+ + L+ +D + Sbjct: 70 FKMALMKEWGRESVDKQYDSKLLVELHIDRDEKIEDVPVKMIGLTIKALEDTLKIIDINK 129 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +A++++ + I +G+G+S +VA D NKF R + D +Q++ + + D Sbjct: 130 YKKAIEMIRSSNIIDVYGVGNSGSVASDIRNKFLRIGLECRAYSDSNIQQICASHLTSND 189 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMP- 236 + + +SH+G T + V ++A+E+ A IALT+ P E E+T Y Sbjct: 190 LAIGVSHSGSTIDTVNALKIAKESGARTIALTNFKAPAISEYADITFFTGGEETTFYSET 249 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 MVSR++QL ++D+L G L + L+++ LKE + K+ Sbjct: 250 MVSRISQLAIVDMLYMGILLDDYDLYTKRLEKINLLLKEKNYTKK 294 >UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMQ5_CLOPH Length = 285 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 6/282 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ K +S ++ L+ SERKVA L + +N IA +A E+ VS+ T RFC+++ Sbjct: 3 NIEIKTRSIMDSLNNSERKVATYFLNNIENIFSIPIARLAEESGVSQVTWIRFCKAIGFD 62 Query: 62 GFPDFK----LHLAQSLANGTPYVN-RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G D K + L S + G + ++ + ++E I + + ++ +D Sbjct: 63 GLKDLKKSLFMELNSSTSEGIDTSDFSDIKKHSTLEQMCNTIRNTTLQAVEDTIKLIDYD 122 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + + V +L++A I FG+G+SA VA D K R N V +S D+ Q + N Sbjct: 123 TLKKVVSILSKASCIKLFGVGASALVADDFCKKLLRINKNVNFSYDMHTQLVYGANARPE 182 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM 235 DV V+ S++G TK ++E+ LA++++ I +T +PL A +I + PE Sbjct: 183 DVAVIFSYSGTTKEMLEIMDLAKKSNCPTIVITKYTKSPLVASADYSIYISAPEINYRSG 242 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR+AQLT++D+L T + L++ E + R Sbjct: 243 AMSSRIAQLTIVDLLFTSLANKNYTSVEKYLEKSSEVCRSHR 284 >UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HWK5_9FIRM Length = 297 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 148/288 (51%), Gaps = 29/288 (10%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I S+ +K+E AE L D ++ +I+ +A E S ++ +F + + +G+ DF Sbjct: 21 ILSKKSTFTKTENFYAEYFLKLDDEILNKTISNVAEETESSTASIFKFIKKLGFKGYKDF 80 Query: 67 KLHLAQSLANGTPYVNRN-----------VNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +L+LA + +N+N VNE+DS + KI + ++ ++ + Sbjct: 81 QLNLATN-------INKNSDDSLLTAITSVNENDSPDEIANKIMAFNIQSMYTLKEDIKN 133 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 ++L+ ++KKI FFG+G SA +A+D+ +KF R V Y D +Q +C Sbjct: 134 IPFESCLNLIKKSKKIHFFGMGGSATIAYDSYHKFLRTKYMVNYISDSHMQLSACTKMDQ 193 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP------LAREATLAITLDVPE 229 D + + SH+GRT ++E++++A++N A +IALT G P ++ EA + +++ Sbjct: 194 NDCIFVFSHSGRTLEVIEVSKVAKKNKAKIIALT--GNPKSEMVKISDEAMILPSIESEH 251 Query: 230 DTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 T+ + +R+ LTV+D+L + + +K+ +ALK ++ Sbjct: 252 GTE---SLNARILYLTVMDILLISLMYDNVEENKKYMKKRLDALKVTK 296 >UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor) n=2 Tax=Bacillus RepID=Q9K6Z8_BACHD Length = 284 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 143/283 (50%), Gaps = 13/283 (4%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L KI+ +L +E KVA +L P+ + +A +AN S+ ++ RFC+ + Sbjct: 6 LLAKIEQELASFPAAETKVANYVLKHPELVPTMTTKQLAEQANASQSSIVRFCKRLGLES 65 Query: 63 FPDFKLHLAQSLANGTPYVNRN--VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 FP KL LA+ L Y+N + DDS K+ LD ++++ A Sbjct: 66 FPKLKLALAKELTRKEAYINSASLLETDDSPPILFQKVSSLNQMALDMATKAMNEQAFTE 125 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDI--VLQRMSCMNCSDGDV 178 AV+ + +AKKIAFFG+G S D KF R + S D ++ ++ M+ + DV Sbjct: 126 AVEQMVKAKKIAFFGVGGSFTSCIDGQYKFMRLGFHSLASGDYHQMIPFITMMD--EQDV 183 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYM-- 235 V+ +S +G TK ++++A A+E + +I +T S+ + L R+A A++L +P D ++ Sbjct: 184 VICMSTSGNTKEVLDIADYAKERNVKLIGITASSRSALTRKA--AVSLLIP-DIEVQQRI 240 Query: 236 -PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + SR +QL VID L R G+ D ++ +E R Sbjct: 241 GSIASRTSQLNVIDALYVSVFHRIGSDLLDAFDASRKKTEEKR 283 >UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3D9_THELT Length = 276 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 134/271 (49%), Gaps = 22/271 (8%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I++ + +K E ++A+ ++ PD IH SI + E + + TV RFC+ + GF F Sbjct: 9 IKANQKQFTKKENELAQFVIDHPDEVIHMSITEIVDELRIGQGTVVRFCQKLGFSGFHPF 68 Query: 67 KLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRH--------SLDKSAI 118 K+ LA+SL ++++ E + AM DH++ L++ + Sbjct: 69 KIALAKSLGR----------QEEASEGSKDML---AMVKEDHIKAIEETSKLLKLNEKVV 115 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + + ++ +++ G+G+S A DA KF R V V Y D Q MS C++ D Sbjct: 116 YQCAEKISNCRRLYLLGVGASGVTALDAYYKFMRIGVDVKYMLDPHFQAMSLSGCNEKDC 175 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 VV S +G T +V++AQ+A++N A VIA+T +PL A + V E+ + Sbjct: 176 VVAFSQSGSTAVVVDMAQIAKQNKACVIAVTGYNKSPLTFYADFVLLTAVRENPFQSGAI 235 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKR 268 S++AQL V++VL L K + N+ R Sbjct: 236 RSKIAQLHVLEVLFEQTKLLLADKAKQNVDR 266 >UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZR0_ERYRH Length = 280 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 138/278 (49%), Gaps = 8/278 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + +I+ + + +E+++AE IL + D ++ S A E N S + RF + + Sbjct: 1 MSCIYRIKENMHTYTDTEKRIAEYILENKDEVVNFSSQHFAKEINSSAAAIVRFSKKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ LA+ + ++ + E+D++E+ K S T D+ L+ ++ Sbjct: 61 NGFTHLKVELARDHSEEEQSFDKLIKEEDTIETMVRKSHYSNHRTFDNTYKLLNLEVLDA 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ ++ A++I G+G S V D +KF R + VVY DD L+ S + ++ DV + Sbjct: 121 SIAAISNARRIYLLGIGGSGIVCQDLYHKFVRIDADVVYFDDFHLEMSSLTHITENDVTI 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 +S++G+T+ ++ +LA++ A IA+T G LA+ + I + E + S Sbjct: 181 ALSYSGQTREIIMAQKLAQDKGATTIAITQVGRNELAKNSDFVINIPKEESEVRLGSIAS 240 Query: 240 RLAQLTVIDVLATGF-------TLRRGAKFRDNLKRVK 270 R + L + D+L G T R+ RD +K ++ Sbjct: 241 RFSMLAISDLLYLGVAKNNIEETRRKIVNTRDTIKSIR 278 >UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=Lactococcus lactis subsp. lactis KF147 RepID=D2BPE4_LACLK Length = 273 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 153/282 (54%), Gaps = 15/282 (5%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L++IQ ++ +SE+K+AE IL +P I IA +A +NVSE +++RFC+ ++ Sbjct: 1 MNILDQIQVNFQNFFESEKKIAEFILKNPKKVIDMPIALLARNSNVSEASISRFCKKLNL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ LA+ N VN+N + ++ +++ + +A D+ LD + Sbjct: 61 TGFHQLKIELARIQDNENIKVNKNTSLNELIKNISKIKTTELIAATDN----LDIDNLQS 116 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + ++T K F G++ VA DA +F + + V DD +Q +N D+++ Sbjct: 117 IIKIITNVKLTHFVASGNTIPVAEDASYRFNQLGITSVVFDDWQVQTAFTLNMRKEDLLI 176 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAIT---LDVPEDTDIYMP 236 +IS++G +K+L++L +A+E +I++T+ +P+AR + +T D D Y Sbjct: 177 VISNSGESKSLIKLINIAKEKKIPIISITNHPDSPIARLSNFHLTSFSRDYFFHNDYYF- 235 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFR-DNLKRVKEALKESR 277 SRL+ + +I+++ F + K R +N+K ++ + E++ Sbjct: 236 --SRLSAMYLIELI---FLILSQDKSRLENIKLHEQIISEAK 272 >UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C2G7_BEUC1 Length = 285 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 134/286 (46%), Gaps = 11/286 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ IQS+L+ + S R+VAE IL P + +I+ +A + SE T+ RFCR++ Sbjct: 1 MSIQSSIQSRLDQFAPSMRRVAEAILERPQVVLEKTISELASQCETSETTIVRFCRTLGL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNR--------NVNEDDSVESYTGKIFESAMATLDHVRHS 112 G+ +L LA + G R ++ +D + + KI + ++ S Sbjct: 61 TGYVQLRLELATEI--GRENAQRGELGDHGADILAEDGLAAMAAKIAFTDTLGIEETLAS 118 Query: 113 LDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMN 172 LD + R VD + A + +G+GSS + A D K FR DD + Sbjct: 119 LDIEHLERVVDAIDTAGRSVTYGVGSSGSSAADLQRKLFRIGRVAFTFDDPHDAVTAAAL 178 Query: 173 CSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDT 231 S GDV V SH+G T+ + A ++ A +A+T SA + LAR A + + V E Sbjct: 179 SSPGDVAVAFSHSGATREALAFLATAGKHGARTVAVTNSAESALARAADIVLVTSVRETQ 238 Query: 232 DIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR+AQL ++D + G RR + D LK A +E R Sbjct: 239 FRSGAMASRIAQLMIVDCIFVGVAQRRYDQTVDALKSTYAAAQELR 284 >UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_LISW6 Length = 283 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I+ L L SE+K+ + +LA+P+ +SI +A +A+ S V RFC+S+ + Sbjct: 5 SIINRIEGILHDLPTSEKKIGQTVLANPEFTTTASIHKLAQKADASGAAVVRFCKSIGLQ 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FP+ K L+ LA ++ ++ + T K+ + M T++ LD++ + A Sbjct: 65 SFPELKRQLSLDLAQPQKIGYYDIEPNEDFHTITDKLVSNMMQTMNDTASQLDETKVLTA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 DLL A I +G+G+S VA D K+ R V+ + D + M+ V + Sbjct: 125 CDLLGDADTIYTYGVGASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKRKSVFIA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAI-TLDVPEDTDIYMPMVS 239 IS++G T +++L A+ ND VI+LT G L +A LA+ T PE S Sbjct: 185 ISNSGETSEVLQLVDQAKLNDVTVISLTRFGNNKLKEKADLALETSRAPEAEIRSTATSS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R AQL V+D+L + + +K+ +EA R Sbjct: 245 RQAQLLVVDILFYYYASHHYDEMIQQIKQSREATNRFR 282 >UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788119 Length = 278 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 14/274 (5%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +++ + L+ SERKVA IL P I S+A +A+ + S+ + R C++M +G+ Sbjct: 5 LVRLREVYDSLNPSERKVAAFILQEPAEMIQMSVADLAVRSGSSQAAIVRLCKTMGFKGY 64 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D KL +A L +++ +DS+ + + + + ++ +++ + AV Sbjct: 65 QDLKLKVAGDLQEPLATGYQDIRPNDSISAIIQNVSNNNIQSIRDTMKIMEEGMVEEAVL 124 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L Q+K+I FG+G+S + DA KF R N + D +Q S + + D V IS Sbjct: 125 ALDQSKRIFMFGVGASNLIGMDAQQKFLRINKVCISFPDPHVQLTSAVLLTPDDAAVCIS 184 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVP------EDTDIYMPM 237 ++G T ++ A +A+E I +T G ++TL+ ++D+P E+ M Sbjct: 185 YSGETDEVIRAAAIAKEKGCKTIGITKYG-----DSTLSRSVDIPLYTSSTENEIRSGAM 239 Query: 238 VSRLAQLTVIDVLATGFTLR---RGAKFRDNLKR 268 SR+ QL +ID+L G R K+ D +R Sbjct: 240 SSRITQLNLIDILYLGVASRNYENSVKYLDESRR 273 >UniRef50_Q21ZX8 Transcriptional regulator, RpiR family n=4 Tax=Comamonadaceae RepID=Q21ZX8_RHOFD Length = 310 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 3/280 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L +I + H S R V +IL P + S +A A S PTV R CR + Sbjct: 4 KVLARIAETMAHAPTSRRSVLAMILQDPQRVLDESFEQLAHRAGSSVPTVMRTCRDLGYP 63 Query: 62 GFPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G +FKL LAQ LA +G+P ++R V D + K+ A + V+ L + + Sbjct: 64 GLREFKLALAQELAVSGSP-LHRRVQLHDGAQEVISKVIRGAATAVSGVQAQLGVAEVEA 122 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A D + +A ++ + +G +S+ +A D + FR + DI LQ +S VV Sbjct: 123 AADAIVRASRVDCYSVGVTSSFMASDMQARLFRLGLVSNAYLDIHLQLVSAATLGTQGVV 182 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH G +L+E +A A VIALT T LA+ A + + + VPED +++ + Sbjct: 183 FAISHVGGMPSLIEAVDVAHSQGATVIALTQQETELAKHADIVLGIHVPEDPIMHVGTEA 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 L LTVI+++ R G L V+E L D Sbjct: 243 YLVHLTVIEIVTVLVAQRLGDLAVKRLGGVREVLSTRGVD 282 >UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG85_KOSOT Length = 275 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 14/282 (4%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++ +++ + LS+SER+VA+ I+ PD+ IH +I +A ++ SE TV R + + G Sbjct: 2 IIVQLKGIYDSLSESERRVAKYIIERPDDVIHYTITELAKFSHSSEATVYRLVKKLGFSG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTG---KIFESAMATLDHVRHSLDKSAIN 119 + FK+ LA+ L+ + + V E+ S SY +I + ++ LD A+ Sbjct: 62 YQSFKISLARELS-----IPQEVIEEGSEGSYQNFVERIVQENISLAKETMAVLDLDALK 116 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +AV+L+ A+++ FFG+G SA VA F + D Q M ++ DVV Sbjct: 117 KAVELIINARRLVFFGVGRSAVVAQSGSFNFALLGFSSTHYIDPHAQVMVASGLTNEDVV 176 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAR--EATLAITLDVPEDTDIYMP 236 V ISHTG ++ V+ Q+A A I +TS +P+ + L P ++ Sbjct: 177 VGISHTGTIRDTVKSVQVAHAAGAKTIVITSGINSPITEVGDVVLYTAAGKPSTSEF--- 233 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 VSR+ + ++D+L R + + +++E LK RF Sbjct: 234 TVSRIGEFLILDILYKTVVARMSERLSKHFDKLEEILKPKRF 275 >UniRef50_B9K581 Transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) n=3 Tax=Proteobacteria RepID=B9K581_AGRVS Length = 291 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 1/276 (0%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I+ + L+ E KV + + D + +S+ +A A VSE V + + + GF D Sbjct: 14 RIRMMMPMLTPLEAKVVDTVFGMRDFSEETSLKQIAENAGVSEAMVVKITKKLGFSGFRD 73 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 F+ ++Q T +++ ++ DD+ K+F +++ L+ LD +A ++A D++ Sbjct: 74 FRSSVSQYNRQPTTEMHQELSVDDTSLEIVQKVFRTSIHALEETLAILDMAAFDQAADMI 133 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 +A+ F+G+G SA +A D +KF R V DD + MS +D DV + SH+ Sbjct: 134 HKARNRDFYGVGGSAQIARDVAHKFLRIGVRASVFDDSHMMLMSAALLADTDVAIGFSHS 193 Query: 186 GRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T ++E QLAR+N A IA+T+ G + LA+ A + + + +R+AQL Sbjct: 194 GNTIAVIEALQLARKNGASTIAVTNYGSSALAQSADVVLCSTAQGSPLMGENAAARIAQL 253 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 ++D + R NL R A+ R D+ Sbjct: 254 NILDAIFVAVAQRDYQAAERNLDRTMSAVTSKRRDR 289 >UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=Bacillales RepID=C4KZ09_EXISA Length = 301 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L KI E ++ E+K+A+ IL+ + + +A + +VSE ++ RF R + Sbjct: 22 SLLTKIDLAKEDMTAVEKKIADYILSHSTLIPNMTTKELAQKTDVSEASIVRFARVVGID 81 Query: 62 GFPDFKLHLAQSLA-NGTPYVNRNV--NEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F FKL L + LA T + NV +D +S+ K+ A ++ ++DK + Sbjct: 82 SFKAFKLALVKDLAVTETTLTDFNVLQQKDTPYDSFQ-KVIHVNKAAIEACAEAMDKREL 140 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AVDL +A ++ F+G+G S+ A DA KF + S D + DV Sbjct: 141 EHAVDLFARASRVIFYGVGGSSTAAIDAQYKFTKLGYAATTSPDFHYMLSLIPHLGKSDV 200 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAI-TLDVPEDTDIYMP 236 V IS +GRTK+++EL + A++ VIA+T+ +PL REA + + T +V D I Sbjct: 201 FVAISTSGRTKDVLELVRFAKKKRVPVIAITNLDKSPLYREADVRLCTPNVESDFRI-AS 259 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + SR+ QLT+ID L G R+G D ++ + + R Sbjct: 260 IASRMTQLTIIDTLYMGLLHRKGEGLIDRYAEARDEMVKLR 300 >UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulator TM_0326 n=7 Tax=Thermotogaceae RepID=Y326_THEMA Length = 280 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 157/286 (54%), Gaps = 14/286 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANV-SEPTVNRFCRSMD 59 M+++++I+ + + + +E+K+A+ IL+ P I SSI+ ++ +A V SE +V +F + + Sbjct: 1 MDVIQRIKEKYDEFTNAEKKIADTILSDPKGIIESSISDLSEKAGVKSEASVVKFYKKLG 60 Query: 60 TRGFPDFKLHLAQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F FK+ LAQS++ V +V+ +D ++ T KIF++ + + + LD +I Sbjct: 61 LNSFQQFKVLLAQSISRAPLEIVYEDVSSEDDTKTITEKIFKATVRAILDTLNWLDIDSI 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 R VDL A++I F G +SAAVA DA +KF R ++S+D + S D+ Sbjct: 121 ERTVDLFKNAQRIIFIGFAASAAVAFDAFHKFTRIGKNCLFSNDEHIIAAILATASPSDL 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDV-----PEDTDI 233 +V ISHTG T ++V A+ A+E V+ +T R++TLA DV ++T I Sbjct: 181 LVAISHTGETISVVNFAKKAKEMKMPVVTITG-----NRKSTLAKYSDVVLATNTKETKI 235 Query: 234 YM-PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 M SR+ QL ++D + T R + +NL + + A+ E ++ Sbjct: 236 RTDAMTSRIVQLVILDTIYT-LLAARDPRAIENLNKSRLAVSELKY 280 >UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=22 Tax=Enterococcus faecalis RepID=C2JLW7_ENTFA Length = 290 Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 11/280 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ IQ +L+ L KSERK+AE IL + + I + +A +A S + RFC SMD Sbjct: 12 NIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSMDVN 71 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + KL L+ +L + V + +S K+ + ++ +L+ A+N A Sbjct: 72 GFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAVNEA 131 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VDLL + + I +GLG+S+ VA D KF R V + D L + V ++ Sbjct: 132 VDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSVFIV 191 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYM---PMV 238 IS++G K LA LA++ ++++T + E + I L D+ + V Sbjct: 192 ISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKS-DIVLQTSSGEDVPLRSAATV 250 Query: 239 SRLAQLTVIDVLATGF-------TLRRGAKFRDNLKRVKE 271 S +AQL V+DVL + TL + R N++R+KE Sbjct: 251 SLVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLKE 290 >UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=16 Tax=Enterococcus RepID=C2H8J8_ENTFC Length = 286 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 148/283 (52%), Gaps = 3/283 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +I+S +E S +E+K+A I+ + + + +A + +S PTV RF + + Sbjct: 5 MSVISRIESMMEDYSSAEKKLANYIIGNIEKVPTMTANELAEASGLSAPTVVRFSKKIGF 64 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + DFK+ ++ L G ++ ++S S K+ +A + L++ I + Sbjct: 65 QSLTDFKITISTELQTGIDEGFSDIEANESFYSIKNKLGNNAQVAIKETVDILEEETIQK 124 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ L A+ + +G+G+S+ V D + K+ R P+++ DI + ++ V+ Sbjct: 125 VVECLETAESVFLYGVGASSLVVEDILQKWSRVGKPIIFEKDIHVLLPQLVSNEKKKVLW 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPED-TDIYMPMV 238 L+S++GR+ ++V LA+LA+ + +IALT G PL++ A + + P++ T+ Sbjct: 185 LVSNSGRSTDVVALAELAKNMNIEIIALTQFGNNPLSKIADVLVQTSRPKEITNRSAATN 244 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 S LAQ ID++ F + + + +K+ +EA+++ D + Sbjct: 245 SLLAQFATIDIIFY-FYMAKNESLSEKVKKTREAIQDYFMDSK 286 >UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=Proteobacteria RepID=A1AYM0_PARDP Length = 287 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 1/273 (0%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I+ +L L+ E +V + I D + +++ ++ +A VS+ V + + + GF D Sbjct: 13 QIRMKLPFLTPLEARVVDTITGRNDLDLTTALRQVSEDAGVSDAMVVKIAKKLGFNGFRD 72 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 F+ L ++ ++ +DS K+F++++ L+ +D SA +RA LL Sbjct: 73 FREALVVYRQTDVASLHSEISPEDSSADIIRKVFQTSIQALEETMSIIDVSAFDRAATLL 132 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A++ F+G+G SA +A D +KF R + DD + MS DVVV SH+ Sbjct: 133 HGARQRDFYGVGGSAQIARDVAHKFLRIGLRAGVQDDPHMMLMSAALLGPEDVVVAFSHS 192 Query: 186 GRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T N++E A+LAR+ A VIA+T+ T PL+ A +A+ + +R+AQL Sbjct: 193 GTTSNVIEAARLARQQGARVIAITNYATAPLSELADIALCSTAQGSPLLGENAAARIAQL 252 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++D + R + L R + A+ R Sbjct: 253 NIMDAIFVAVAQRDLERAEAQLARTRNAVDNKR 285 >UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium RepID=C3WE65_FUSMR Length = 284 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 136/265 (51%), Gaps = 10/265 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L KI S L+++S +E+KV E IL +PD + +A S+ TV RF + + Sbjct: 1 MGVLIKINSMLDNISSTEKKVGEYILENPDKIKDLNTYELANITKTSQATVVRFAKRLGF 60 Query: 61 RGFPDFKLHLAQSLAN--GTPYVN---RNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +GFP FKL L+Q L N +VN + DDS E KI + + D Sbjct: 61 KGFPAFKLALSQDLGNRKAESHVNIMHEEIKPDDSFEIIGRKISNENITAISDTYEVTDF 120 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC-S 174 + + +AV +L++A+KI G+G S VA D K + D +Q +SC++ Sbjct: 121 TELEKAVVMLSKARKIMLAGIGFSGIVAKDFYYKLLELGKHAMIEVDTHMQ-LSCLSTMG 179 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 + DV+ +ISH+G+T + + ++A+ VIA+TS A P+ A + + V +++ Sbjct: 180 EDDVLFVISHSGKTMEMYNVVKVAKSKGITVIAMTSIAPNPIKDLADIRLN-TVEMNSNF 238 Query: 234 YMPMVS-RLAQLTVIDVLATGFTLR 257 +S R++QLTVID+L L Sbjct: 239 RSTALSPRISQLTVIDMLYVKMMLE 263 >UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus lactis RepID=Q02VU4_LACLS Length = 282 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 147/278 (52%), Gaps = 5/278 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++ +I+S ++LSKS++ +++ ++A+ D+A SI A + VS T++RF + + Sbjct: 5 LISRIRSYYDNLSKSDQAISDYLIANIDSAAMLSIQEFAQKTQVSTATISRFSKKIGFNS 64 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F + KL + + + ++ D + K F +++L+ + + +++ + Sbjct: 65 FQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLDQTM 124 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 ++L +A FFGLG S AVA A +KF R + VY D Q+M + D +I Sbjct: 125 EILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDCAFVI 184 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP--MVS 239 SHTG+ K+ + L ++ + +IALTS A +PLA+ A +A+ + + E+ + P + S Sbjct: 185 SHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVAL-ISISEEIS-FRPEAVAS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++Q++++D L + ++ L +++ + +SR Sbjct: 243 TVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSR 280 >UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A8RRF4_9CLOT Length = 289 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 4/261 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +IQ S +E+ V + +P+ A SI +A + S T+ R CR M Sbjct: 3 SVLVRIQEYSAQASGAEKGVLRFLRENPEEAAGYSIKQLADKTFSSAATIVRLCRKMGFD 62 Query: 62 GFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + + L A T + + + +DDS+E K+ + +LD+ R +D + Sbjct: 63 GYKELQKSLLYESALRRESTRPMEQEIKKDDSLEELVNKVTYKNIVSLDNTRKLVDLDIL 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 N+ V+LL +++ + FG+GSS VA D K R N V DD Q + N D+ Sbjct: 123 NQCVELLDRSQTVYLFGIGSSLLVARDMYLKLLRVNKACVICDDWHAQLLQARNIRSCDL 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 +++S++G T+ ++ A+ AR +A VI ++ +PL R A + + E M Sbjct: 183 ALIVSYSGLTEEMITCAREARLREAPVITISRFEQSPLVRLADYNLAVAATELIFRSGAM 242 Query: 238 VSRLAQLTVIDVLATGFTLRR 258 SR++QL +ID+L T + +R Sbjct: 243 SSRISQLNMIDILYTAYVHKR 263 >UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNZ1_HIRBI Length = 297 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +I+ + + L S +A+ +L + + S+ +A SE +V CR + Sbjct: 20 NVISRIRIRKDSLGPSTSTIADYVLGHANAVVGMSVTELAEATGTSEGSVINLCRQLGLS 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF KL LAQ + +++ ++ D + K+F + L LD AI+ A Sbjct: 80 GFQQLKLSLAQEVVRPVQFIHEDLQPSDDTSTVCQKMFHAGSEALRETLSILDPDAISMA 139 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD++ A ++ +G+GSSA +A DA + R + D +Q +S V+ Sbjct: 140 VDVIRSADRVEIYGIGSSAPIAEDAQYRMLRIGLDAKVVVDSHIQAISASRTGPNVAVLT 199 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G T + +LAR+ A I +T+ A +PL A + + E M SR Sbjct: 200 ISHSGSTHETLAATRLARDAGAKTIIITNFASSPLQAYADVKLYTMARETKFRSEAMTSR 259 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL ++DVL L + L++ E L RF Sbjct: 260 IAQLCILDVLIAALALDDYERATTVLRQTSEVLSIKRF 297 >UniRef50_P44540 Uncharacterized HTH-type transcriptional regulator HI0143 n=33 Tax=Gammaproteobacteria RepID=Y143_HAEIN Length = 288 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 133/261 (50%), Gaps = 19/261 (7%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L KI S + L+KSE+K+A+ IL SPD S++ +A V E T+ RFCR++ + Sbjct: 6 NVLNKIGSLYQSLTKSEKKIADTILRSPDLVSQCSLSEIAKHLQVGEATLVRFCRTIGFK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSV---------ESYT-GKIFESAMA-TLDHVR 110 GF +FKL L+ LA N+D+S+ +S T + ++A+A ++ Sbjct: 66 GFSEFKLELSIELATKD-------NQDESILETEIMPSDDSLTIAQKLQTAVANVMEETI 118 Query: 111 HSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSC 170 + LD + V +L +A++I FG+GSS A DA NK R V S + M Sbjct: 119 NLLDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQA 178 Query: 171 MNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPE 229 + DV + +SH+G + ++A++N A +ALT S +P+ A + + Sbjct: 179 ALLTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQ 238 Query: 230 DTDIYMPMVSRLAQLTVIDVL 250 + +++AQL V+D++ Sbjct: 239 GKLQGDSIGTKIAQLFVLDLI 259 >UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=Gammaproteobacteria RepID=C4L7F8_TOLAT Length = 292 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 1/264 (0%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI+ L LS +ER++AE +LA + +SI ++A + VSEP + + + + GF + Sbjct: 14 KIRMALPGLSNTERQIAEWLLAKGNVESKTSIKSVAEQLEVSEPLIVKLSKKLGFAGFRE 73 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 + L + L++ + + DSVES K+F +++ + R D I A L+ Sbjct: 74 LRQALVEYLSSLPIDSEQEIEPTDSVESVLNKVFANSIQAMKEARSVADPILIANAAQLI 133 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 AK + FG+G SAAV D +K R + D + M + DV+V+IS + Sbjct: 134 FNAKNVVIFGVGGSAAVCQDFEHKLLRIGILSRAYSDFHMMLMVSSQLDENDVIVVISQS 193 Query: 186 GRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T+ L++ + A++ + VI +T+ T LA+ A AI + V+R+ QL Sbjct: 194 GDTRELLKAVENAKQRHSRVICITNNDTSALAQLADYAIFSPAKGGILLGQNAVARIVQL 253 Query: 245 TVIDVLATGFTLRRGAKFRDNLKR 268 ++DVL L+ K R+ L R Sbjct: 254 NLLDVLFIAILLQDHDKNREKLTR 277 >UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM70_9ACTN Length = 283 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 1/265 (0%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 LS ER++AE +LA P A +I+ +A +++ TV +F + + GF DF+ LA Sbjct: 17 LSDKERQLAEFLLADPHKASKMTISQIAQTLGMADSTVFKFTQKLGFEGFRDFRGELAAE 76 Query: 74 LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAF 133 + ++ ++ + + +FES++ +L + + I A L+ ++ F Sbjct: 77 GFDPEVSIHEHITHKSTPKQMAETVFESSIRSLTDTKELFSEQDIIHAAKLIEDCYQLTF 136 Query: 134 FGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVE 193 +G+G S+ VA DA +KF R V Y D LQ M + D +L+SH+GR ++ Sbjct: 137 YGMGGSSVVAADAYHKFLRTPKRVAYDADFHLQLMRASRSNGDDCALLVSHSGRCIQTIQ 196 Query: 194 LAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLAT 252 +A+ RE A I +TS +PL A + E + SR++QL ++D L T Sbjct: 197 IAEKLREVGASTIVITSNPSSPLTALADACLVTIAEETAYRSESLASRISQLALVDALYT 256 Query: 253 GFTLRRGAKFRDNLKRVKEALKESR 277 +LK V+E + +R Sbjct: 257 IVMFSDENAASRSLKEVREVISATR 281 >UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=Clostridium RepID=A7GD47_CLOBL Length = 281 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 145/281 (51%), Gaps = 13/281 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L +I+ + ++KSE+K+AE I SP + I S +A++ + S ++ RF + + Sbjct: 1 MGVLLRIRENFDSMTKSEKKIAEYIFKSPKDIISDSAQEIAIKTSTSPASIIRFTKKVGY 60 Query: 61 RGFPDFKLHL-AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +FK L A+ + + +N +DS++S K+ + T++ + +D + Sbjct: 61 NSLNEFKFALVAEEYTKESTEFDYIINYNDSIDSIINKLGNKVIDTINDTKELVDDEKLL 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV + A+ I +G+G+SA VA D K R N V++ D LQ ++ ++ DV Sbjct: 121 EAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDVA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLA-ITLDVPE-DTDIYMPM 237 V IS++G T+ + + A++N A IA+T G + + +A I L++P + D+ + Sbjct: 181 VAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSIL--SNIADINLNIPSIEKDLRIGA 238 Query: 238 V-SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + SR +QL V D L G ++NL + ++ L +R Sbjct: 239 ISSRTSQLFVTDSLFLGIA-------KENLDKTEKNLINTR 272 >UniRef50_B9B6B2 Transcriptional regulator, RpiR family n=3 Tax=Burkholderia multivorans RepID=B9B6B2_9BURK Length = 311 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 135/267 (50%), Gaps = 8/267 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + IQ++ L+ SE KV E++L+ P S+ A +A A VS PTV R R++ Sbjct: 35 QWIGSIQARSGDLAASEAKVVELLLSDPLFVGASTTAQVAARAGVSPPTVIRAARALGFT 94 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMAT----LDHVRHSLDKSA 117 GF + K+ +A++ + V D+ + + E+++ T L + +++ +A Sbjct: 95 GFTELKIEIARARGTARFFAPPEVLTADA---SSAAVLETSIRTGVDALSALSGAIEIAA 151 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +++AV + QA+++ FG G SA VA DA+ + V V D + ++ GD Sbjct: 152 LDKAVASIQQARQVFAFGAGPSATVAADAVFRLRAVGVTTVGIPDYLSAMIAARLLGPGD 211 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMP 236 VV+ +S TGRT + + +A A A ++A+T+ GTPLA A +A+ + Sbjct: 212 VVIAVSSTGRTSSTLAVADAASSAGATLVAVTNQYGTPLANLADIALVVGGAPLPAQMAA 271 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFR 263 SRLAQL VID L LR A+ R Sbjct: 272 AGSRLAQLVVIDALVAALALRDPARSR 298 >UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJ20_EXIS2 Length = 284 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 13/275 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + +I + E L S RKVA+ +LA + +I +A E+ S V RFCR++ + Sbjct: 4 GIFSQISAVHEELPSSSRKVADFVLAHMNEIAGMTIHHLAEESGTSAAAVVRFCRALGLK 63 Query: 62 GFPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P+ ++ ++ A G + +N D VE K +++ L L + Sbjct: 64 GYPELRMRISADTARTDLKGYHDIEKNERPADLVE----KTVSNSIQALQDTAKQLSEDR 119 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 I A D+L QA+ I F+G+G+S VA DA K+ R + D L N S D Sbjct: 120 IAEAADVLDQARAIYFYGIGASNVVALDAAQKWTRVGKLTIQESDQHLVATILANASQDD 179 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAI-TLDVPEDTDIYM 235 V IS++G T+ +VEL +LA+ VI+LT G +++ A +A+ T PE Sbjct: 180 VFFAISYSGETEEVVELIRLAKIRGLKVISLTRFGDNRVSQLADIALWTSRAPEAPLRSA 239 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 + SRLAQL IDVL F + D ++R++ Sbjct: 240 ALSSRLAQLFAIDVL---FLSYAAVHYDDTIERLQ 271 >UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L9A2_9FIRM Length = 336 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 21/274 (7%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L+ I Q L++S +K+A+ I A+ + SI+A+A + VSE T+ RFCR + Sbjct: 55 NILDLITEQYPTLTRSGKKLADYIFANTTETQYLSISALAENSGVSEATITRFCRKLGLS 114 Query: 62 GFPDFKLHLAQS-------LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 G+ DFKL +A+S +G+P + DS+ K+ + + +L LD Sbjct: 115 GYNDFKLAIAKSDHVTDMGEPSGSP---STITSQDSLPDIFQKLLSANILSLTETFDLLD 171 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + I+RAVDLL A + G GSS+ +A +A +F + ++ D +Q +S + Sbjct: 172 EKEISRAVDLLYGAHHVYCLGNGSSSVMAMEAWARFSTASTRFIHIADSHMQMLSIALAT 231 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLA-ITL-----DVP 228 DV++ S++G T+++ ++ +A + VI +T P ++ A A +TL + P Sbjct: 232 PQDVILFFSYSGATRDMEDIMNIAHKRKIPVILVTHF--PKSQAAAFADVTLLCGYNESP 289 Query: 229 EDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKF 262 + + +R+ Q+ +ID L GF L+ + Sbjct: 290 LQSG---SIAARMGQMLIIDCLFHGFCLKSPGYY 320 >UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales RepID=C5EPZ9_9FIRM Length = 295 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 19/270 (7%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 L KSE+K A+ L SIAAMA A VS+PTV RF +++ GF +FK + ++ Sbjct: 16 LRKSEQKAADYYLGYDGPVETMSIAAMARAAGVSQPTVMRFVKALGLEGFKEFKYQVLKA 75 Query: 74 LANGTPY---------------VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G ++ D E G++ +++ LD + S+I Sbjct: 76 SMGGNGSGMGEEEGGRSEEVLRYGYEISARDRPEEVPGRVVAQSVSYLDDALKHISPSSI 135 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA L+ A++IA + + +SA+VA D + K + +DI LQ +S N DV Sbjct: 136 GRAAKLICGARQIAVYYVENSASVAGDLVTKLMYLGFNCIMYNDIYLQHISAGNLDSRDV 195 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM-P 236 + IS++G +KN V++ +LA++ A IA+T+ + +A A I L +Y Sbjct: 196 AIGISYSGSSKNTVDVMKLAKKKGAATIAITNFEHSLIAGHAD--ILLCTSSQQLLYGNA 253 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNL 266 + SR++Q V+D++ G LR F + L Sbjct: 254 IFSRMSQTAVVDMIYMGIILRDYGHFTEKL 283 >UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID=C3RHA3_9MOLU Length = 288 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 134/283 (47%), Gaps = 7/283 (2%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I++ L SE+KVA+ IL S+ +A E VS+PTV RF +++ F Sbjct: 8 RIKTIYNILRPSEKKVADYILNYCGKLEDLSMTLLAKEVAVSQPTVMRFVKAIGYDSFKQ 67 Query: 66 FKLHLAQSL---ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 FKL LA++ N ++N DD + GKI +A + L++ SL + V Sbjct: 68 FKLELAKNYDKENNIDILYGFSINTDDKIMDLPGKIVATATSMLENALKSLSLVNYQKTV 127 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ Q++ I+ + + +S VAHD M K V D LQ + N + + + I Sbjct: 128 ALINQSQHISIYAVENSMGVAHDLMTKLIYLGKSVTCHSDYYLQSIDASNLTRDSLAIGI 187 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM-PMVSR 240 S++G +KN VE+ ++A++ A IA+ + T L R I L D +Y + SR Sbjct: 188 SYSGNSKNTVEVLKIAKDAGAQTIAIVNFENTMLTRYGD--IVLSTSNDQFLYGDAIFSR 245 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLL 283 AQ+ ++D++ G + + L +K + K+ L Sbjct: 246 TAQIALVDMIYMGVIISDYDNYTKKLDHYSRLIKHRGYQKEEL 288 >UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I8T9_9ACTO Length = 312 Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 7/251 (2%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I+++L L+ S RKV E+IL P H S A + S+ TV RFCR++ + Sbjct: 28 IRTELPRLAGSLRKVGELILEDPAAVTHCSAAELGRRTGTSQATVTRFCRAIGLESYQHL 87 Query: 67 KLHLAQSLAN------GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + LAQ G+ + +++ DDS+E + + + + +D A+ R Sbjct: 88 LIELAQERGRGEVSDWGSAEIGPDISPDDSLERVVQVVGSADLRAIQQTIERIDLDALER 147 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A L +A++I +G+G S AVA + + FR V ++ S + DV + Sbjct: 148 AAQALAKARRIDVYGVGGSGAVAQETETRLFRIGCQVRGWTEVHGAATSAALLTPADVAI 207 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+G T+ +E ++A+E A IA+T+ +PLA+ A + + E + + Sbjct: 208 GISHSGATRETLEPFEMAKERGATTIAITTDPRSPLAKAADIRLISATSETSFRTGSIGG 267 Query: 240 RLAQLTVIDVL 250 R + L ++D L Sbjct: 268 RHSVLMIVDCL 278 >UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016945F6 Length = 248 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 12/246 (4%) Query: 44 ANVSEPTVNRFCRSMDTRGFPDFKLH----LAQSLANGTPYVNRNVNEDDSVESYTGKIF 99 A VSE T+ R RS++ +G+ + KL LAQSL + + ++ D S +S I Sbjct: 7 AEVSEATIVRLSRSLNLKGYQELKLRIAADLAQSLNSNLAESYQEIHMDASSQSLVESIS 66 Query: 100 ESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVY 159 + M ++ L+ ++RA+++L A+KI FG+G+SA +A D K R N Sbjct: 67 HNNMRSIQDTMSVLNIKELDRAIEVLGGARKITLFGIGASAVIAQDFKQKLTRINRWCEA 126 Query: 160 SDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLARE 218 + D Q N + D V+ IS++G T++++ Q A+E A +I+LT G P+A + Sbjct: 127 AYDFDSQATLAANLQEKDAVLGISYSGNTQDILLAMQAAKERGATLISLTKFGHNPVAEQ 186 Query: 219 ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 A + + E + M SR+AQL VID+L G R N + AL+ +R Sbjct: 187 AHIRLFTSSLEKSIRSGAMASRIAQLNVIDILYVGIA-------RQNYEENILALENTRK 239 Query: 279 DKQLLN 284 +++N Sbjct: 240 AVKMMN 245 >UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9G3_9ACTN Length = 285 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 9/274 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI+S L ++ E+ +A+ IL + +I +A + V++ T+ +F + M +GF D Sbjct: 9 KIKSLLPSCAEKEQAIAQFILQHVRETSYMTIHELADKLGVADSTIFKFAQKMGYKGFRD 68 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 F+ L + V+ ++ DS+ + IF S++ +L + L++ + RA+ L+ Sbjct: 69 FRNDLLTEAYDPEVSVHEHITTRDSLATIAATIFHSSVTSLHNTLALLNEDNLKRALSLI 128 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A + FFG G S VA DA +KF R + + D +Q M DV ++ISH+ Sbjct: 129 NNAHTLTFFGCGGSNIVAADAYHKFLRSPLHCQNAIDEHIQIMQASLLGAQDVAIIISHS 188 Query: 186 GRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM-PMVSRLAQ 243 G ++ +++A++ REN +I +TS TP+ R A + + + E+T + SR+AQ Sbjct: 189 GLSRTTLQIAEILRENRVPIIFITSYLNTPITRFADV-VFISASEETGYRSESLASRVAQ 247 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L ++D TL F+ + K V + L R Sbjct: 248 LVILD------TLFCAVMFKSDDKNVAQTLHNIR 275 >UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W838_ATOPD Length = 304 Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 8/268 (2%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +++ ++ S +ER + + IL+ P+ + SI +A + S TV R C+ + G+ + Sbjct: 7 RLEEYRKNASSAERDIIDYILSDPEAVVGQSIHKLAAQTYTSASTVVRLCKKLGCGGYKE 66 Query: 66 FKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F+ L LA V D+ + K+ +++L+ LD ++ V Sbjct: 67 FQQALIYELAVSNKSNDIAVGGVIAGDTTDVIIEKVTAKNISSLELTMQLLDAQVVDSVV 126 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ QA I FG+G+S VA D K R N+ SDD Q + N S D+ +++ Sbjct: 127 SLMMQAHSICLFGMGASLLVARDLQLKLMRLNINCNLSDDYHSQLLYAKNMSREDLAIVV 186 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAG--TPLAREATLAITLDVPEDTDIYMPMVSR 240 S++G T+ +E A +A+ N A VI++T G + L + + + E M SR Sbjct: 187 SYSGLTREAIECAWIAKANGAKVISITRGGIDSELIHRSDYVLGVAETEHIMRSGAMSSR 246 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKR 268 +AQL V+D L + R + ++KR Sbjct: 247 IAQLNVVDALFAAYVNR---NYEKSVKR 271 >UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=Lactobacillus crispatus RepID=C2KD15_9LACO Length = 279 Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 147/284 (51%), Gaps = 14/284 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L +Q++L L + ERK+A IL P ++I +A VS T+ RF R ++ Sbjct: 1 MTFLTDLQNRLPDLPQQERKIALFILQDPQFIQSANINQLASTIKVSNATITRFARRVNC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ LA + A+ VN N+D+S ++ ++++ L ++ LD + + Sbjct: 61 SSFTDLKVKLAAAAASSQ--VNTITNQDNS-KTTAHQVYDFYNRVLSETQNKLDIKQLKK 117 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+ AK++ F+G+GSS + +A + R + + M+ S D+++ Sbjct: 118 IIQLIKSAKRVYFYGIGSSGYTSLEATQRLLRMGISAFAETESNNMFMTSSIISKDDLII 177 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMP--- 236 IS TG T +LV +LA++N A V+ALTS +PLA+ A + + + +DT+ Y+ Sbjct: 178 AISSTGSTDSLVRAIELAKKNKATVVALTSYDNSPLAQLADIVVGV---QDTN-YINDAR 233 Query: 237 -MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 + S+ + + VIDV+ T L + K+ D + R ++ ++D Sbjct: 234 FINSQFSIMYVIDVITT--LLLKNNKYHDRMTRTITSVLNEKYD 275 >UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X148_ENTFA Length = 295 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 150/289 (51%), Gaps = 12/289 (4%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 ++I+ + +LS +E+K+++ + S ++ ++A E VS+ +V +F + + GF Sbjct: 8 QRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKKIGYSGFQ 67 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVE---------SYTGKIFESAMATLDHVRHSLDK 115 +FK+ +A++ +N P +NVN + + + K+ ++ + +L + L K Sbjct: 68 EFKIDIARN-SNYQPTF-QNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNATQFLTK 125 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 ++ + L+ AK + FFG G S+ VA D+ +KF R N Y D +Q + Sbjct: 126 ELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFVTKLTS 185 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 D V + SH+G+TK + LA+ ++ +A +I LT ++G+ LA + AI + E Sbjct: 186 EDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEEGLFRA 245 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLL 283 + SR++ LTV+D+L T + D+LK++++ + ++ D L Sbjct: 246 ESLASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTDPHYL 294 >UniRef50_C7TGD6 Transcriptional regulator, RpiR family n=3 Tax=Lactobacillus rhamnosus RepID=C7TGD6_LACRL Length = 277 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 139/278 (50%), Gaps = 7/278 (2%) Query: 1 MNMLE-KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMD 59 MN + +I L ++ R+VA+ + +SS+ ++ + VS T++RF R + Sbjct: 1 MNTFDSRIAQVYSALGEASRQVADYFRHNYAKVANSSLRNLSDKIGVSTATISRFARQLG 60 Query: 60 TRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 F KL L + + N T N +V +D+ + K + +A L+ L + I+ Sbjct: 61 FASFDQLKLALLKEIDNTT---NGDVETNDNSLASARKTVNANIAALEGTLSFLTQDQID 117 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +V+LL A K+A FGLGSS +A A + F R + ++ +D +Q MS ++ DV Sbjct: 118 HSVNLLLDANKVALFGLGSSNVIAKAAYHTFLRLPLTLIADNDYHMQLMSANKLTEHDVA 177 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYM-PM 237 ++ISHTG +++ L L + +IA+TS T PLA+ + + + EDT + Sbjct: 178 IVISHTGNDTDILALVDLLSAHQVPIIAVTSYATSPLAKRVS-DVFFSISEDTRYRSDAL 236 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 +S +QL + DVL T R G + + V +A+ + Sbjct: 237 ISMTSQLAIFDVLYTELVRRMGLQSEKTIALVHQAVAQ 274 >UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUK3_9FIRM Length = 280 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 137/280 (48%), Gaps = 7/280 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + KI+S LE ++ +E+ + IL + + + + S RF + M Sbjct: 1 MSCITKIKSALESMTATEQMIGRYILEHRHEVLEMNTLELGWASGTSGAAWTRFAKKMGY 60 Query: 61 RGFPDFKLHLAQSLANG-TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +G P KL LAQ + P V+ ++ D++ + K L +D++ + Sbjct: 61 KGLPALKLDLAQDRTDEEMPEVDLFLDPRDTLGALLHKTQTILEQNLRRTYELIDEAVLA 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A+D++ A ++ G+G S V D ++K R N PV Y D + +C GDVV Sbjct: 121 QAIDMMASAHRLFLCGIGGSGIVCMDLVHKLTRINRPVTYDRDTHVLMAQMAHCMPGDVV 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG--TPLAREATLAITLDVPED-TDIYMP 236 +++S++G T + ++A LA+E A +IA+T PLA A + L +P D +I + Sbjct: 181 LVVSYSGNTHTVNQMAYLAKEQGAKIIAITGHNLKAPLASLAD--VCLFIPRDEKEIRLG 238 Query: 237 MV-SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 V SR L V D+L G R+ +++L + ++ +++ Sbjct: 239 SVTSRDGSLIVTDLLYYGVAQRQFHATKEHLVKTRKMIRK 278 >UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PED1_BACCO Length = 289 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 136/279 (48%), Gaps = 17/279 (6%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +I+S+L LSKSE+K+ E IL+ ++ + + +A +A VS TV RFCRS+ Sbjct: 6 NIILQIKSKLTSLSKSEKKLGEYILSHAVETVNDNTSELAKKAGVSPATVVRFCRSIGLS 65 Query: 62 GFPDFKLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF K+ L + G Y + NED + K+ ++ + L+ S I Sbjct: 66 GFSQLKIRLYADASGGLDREIYTDITPNED--ITMIADKLALRFNQSITQTANLLETSCI 123 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + ++ ++ I +G+G+S A D +KF R PVV++ D L S +N S + Sbjct: 124 EKITAMVDKSPAIYVYGIGASHVAAEDFTHKFSRIGKPVVHTLDHHLLGSSLINASKDCM 183 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVP------EDTD 232 V IS++G T ++L Q+A++N + +T R++TLA +D P E Sbjct: 184 FVAISNSGETNEAIKLTQIAKQNGLFTVGITQ-----KRDSTLASIVDAPLIHHGGEAVL 238 Query: 233 IYMPMVSRL-AQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 + + L AQL IDVL + + + LK K Sbjct: 239 LRSAATTSLAAQLFTIDVLYFAYVAKHYHEIMGRLKNSK 277 >UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789683 Length = 289 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 2/259 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L I S L+K+E+KVA+ + P+ + +++ ++ +A V E +V RFCR + R Sbjct: 12 NTLLMISSIYSSLTKTEKKVADYVKGFPEETVLATVTDLSEKAGVGETSVIRFCRKLGFR 71 Query: 62 GFPDFKLHLAQSLANGTP-YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL +AQ L + P V+ +++E D + + K+ L + ++ + Sbjct: 72 GFHEFKLSVAQDLVDRPPSVVDTSIDEQDDLMTVARKLTMQHEILLKNTLDLVNADNLRM 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVD L A K+ +G+GSS A D + R + V D + MS GD+V Sbjct: 132 AVDKLLAANKVYVYGVGSSGITALDLHYQLMRLGLNVEAHRDSHIIAMSASLVKKGDLVF 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T++LV+ + A++N A VI LT +P+A A + + E + + Sbjct: 192 AISTSGSTRDLVDAVKEAKKNGADVICLTGHLRSPIATYADTVLLVSSREMPTEGGALAT 251 Query: 240 RLAQLTVIDVLATGFTLRR 258 + Q ++++L T T+++ Sbjct: 252 KFMQTYMLNILTTLLTMKK 270 >UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEU1_PETMO Length = 269 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 141/277 (50%), Gaps = 15/277 (5%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI+ L+ E++ A+ I+ P + IH SI ++ A SE T+ R + + G+ Sbjct: 5 KIKGIYNSLTNKEKQAAQYIIERPGDVIHYSITELSNWAGTSETTIYRVLKKVGYSGYQK 64 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 FKL LA+ L+ TP ++ ++D I+ + L + +D+ I A +++ Sbjct: 65 FKLELARELS--TPTLDSKESKD-----LFDMIYNRTVNALTDILRQVDRDKITHASEII 117 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 +KK+ F+ +G S +A DA KF D +Q + N DVV+ ISH+ Sbjct: 118 MNSKKLLFYAVGRSFPIALDASLKFAALGFASTAYSDPHMQVIVASNLEKDDVVIAISHS 177 Query: 186 GRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAI--TLDVPEDTDIYMPMVSRLA 242 G ++ + AQ+A+E A I +T+ +PL++ L + + ++P++++ VSR+ Sbjct: 178 GVIRDTYKSAQVAKEAGAFTIGMTAGVNSPLSKIVNLVLYTSAEMPQESEF---TVSRIG 234 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 ++ ++++L + K +++ R+ +A+K +F+ Sbjct: 235 EMFMVELLYNSVASKMSLKNKES--RISQAMKTKKFN 269 >UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6A5_9CLOT Length = 282 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 142/281 (50%), Gaps = 18/281 (6%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L K++ +LS +E +V E IL P + ++ +A E+ S TV R C+ +D Sbjct: 6 MSVLIKLRD-YRNLSAAENQVREYILKYPKKVLEYTVYELAKESFTSPATVVRLCKKIDI 64 Query: 61 RGFPDFKLHLAQSLANGTPYVN---------RNVNEDDSVESYTGKIFESAMATLDHVRH 111 +GF K+ LA+ T Y + ++DS + KI A+ T++ R Sbjct: 65 KGFARLKVLLAEE----TKYFQDMKLNLLDTTTIEKNDSPHAIIEKITNIAVKTIEETRV 120 Query: 112 SLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCM 171 +++ + LL +A + F+G+G+S+ VA DA KF R V+ Q + + Sbjct: 121 LVNEKQFMQVARLLQKAVIVDFYGVGASSPVAIDAQYKFMRIGKNVITYQLYDRQYVQAV 180 Query: 172 NCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPED 230 N V ++IS++G TK ++++A + ++N V+A+TS+G L R A + + E Sbjct: 181 NSDASHVGIIISYSGETKEMLKIAGILQKNGTPVVAVTSSGENSLNRIADYNLFVTAKET 240 Query: 231 TDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKE 271 M SR AQL +ID+L + L + +++K++++ Sbjct: 241 VFRSGAMASRTAQLYIIDIL---YALYCSLDYDESIKKIQQ 278 >UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIM2_KOSOT Length = 283 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 145/279 (51%), Gaps = 13/279 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I++ + +K+E+K+A ++ +P ++ S+ ++ VSE ++ RFC+ + Sbjct: 6 NVLLTIETLKDSFTKTEKKIATFVVKNPQKVVYMSLTEVSDILKVSEGSIVRFCQKLGYT 65 Query: 62 GFPDFKLHLAQSL---ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF FK+ LA S + + + N + S+++Y + + + + + + + Sbjct: 66 GFHPFKIALAVSENQESFSSSEFDFNSRDLSSLKNYVA---QRHIDVIKNTSEFISEEIL 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 V+ + A+ I G+G+S AHDA KF R + S D +Q M +GDV Sbjct: 123 EACVEKILTARTILISGVGASGNTAHDAFYKFMRIGLNCKTSHDAHIQAMIASELREGDV 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREA---TLAITLDVPEDTDIY 234 ++ IS +G T +V++A +AR+ A VIA+T A +PLAR A L T + P ++ Sbjct: 183 LLAISQSGSTLEIVDIADIARKGGATVIAITGYARSPLARFAHHVLLTPTRESPFESG-- 240 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 + S++AQL V+++L T R K R ++R +++ Sbjct: 241 -ALRSKIAQLYVLELLFTAVFHRMEEKGRKFIERTADSV 278 >UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocaceae RepID=Q03YQ8_LEUMM Length = 284 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 10/260 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ ++++Q + + +E+K+ + I+ A ++I M+ + VS T++RF + + Sbjct: 4 NIIAQLRAQRKQYNTTEQKLIDFIINHVSEAREANIQEMSELSGVSTATISRFVKKIGLE 63 Query: 62 GFPDFKLHLAQS---LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F +F + LA + +A + DD++ + K+F A L +L + + Sbjct: 64 SFREFSVSLASAATQMAASVDLFGEIADTDDTI-AVAQKVFGGAENALAATVSNLTATQL 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + A L A+++ FFG+G S+ VA +A +KF R + V+ D +Q M + + D Sbjct: 123 DEATLALISARRVGFFGIGGSSIVAFNAYHKFLRTPIDVIAHPDYDVQLMQAVKLNSNDT 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM-P 236 V+ISH+GR K+ + +A+ E +IA+TS +PLA+ A L + L + E+ + Sbjct: 183 AVVISHSGRNKDTLLIAKKLHEQHVKIIAVTSFKDSPLAKLADL-VLLSLAEEVNFRSES 241 Query: 237 MVSRLAQLTVIDVLATGFTL 256 M S +AQLT+ID L FTL Sbjct: 242 MSSLIAQLTIIDTL---FTL 258 >UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales RepID=D1PSB4_9FIRM Length = 282 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 135/261 (51%), Gaps = 11/261 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N E ++S+ L++S R+VA+ + + A + SI+++A E V+E T+ RFCRS+ Sbjct: 5 NFWELLRSRYSELTRSGRRVADYLTRHAEEAQYLSISSLAAECGVAEATIFRFCRSLGFD 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMA--TLDHVRHSLDKSAIN 119 G+ + K+ LAQ AN P + ++ T SA+A ++ R L+ AI+ Sbjct: 65 GYNEMKISLAQ--ANAIPTAAGADKLEPGADTATLCTHASAVALEAINGTRSVLNPEAID 122 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A LL +A+++ FG G S +A+D +F + + D +Q ++ DVV Sbjct: 123 AAATLLQRARQVFCFGQGGSQILANDIWARFATVSTKFRTAGDSHMQTIAASLMVPEDVV 182 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT----SAGTPLAREATLAITLDVPEDTDIYM 235 + IS++G T++++E ++ + N A VI LT + GT LA L + P D Sbjct: 183 LFISYSGSTRDMMETLRIVKGNGAKVILLTHYADAPGTALADVVLLCGAKESPLDGG--- 239 Query: 236 PMVSRLAQLTVIDVLATGFTL 256 + +++A L V +VL FTL Sbjct: 240 SIAAKIAVLFVAEVLVLRFTL 260 >UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus RepID=C2HLD1_LACAC Length = 284 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 140/278 (50%), Gaps = 12/278 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ I+ + L K E+ + + I+A+P+N I SSI ++ + +S T+ RFCR + T Sbjct: 3 NIFSIIKGKKSQLPKKEQLLGDYIIANPENVISSSIQKLSKDTGISTATIVRFCREIGTN 62 Query: 62 GFPDFKLHL--AQSLANGTPYVNRNVNED-DSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF D KL L AQS N Y + E ++++ FESA ++ + L+ +++ Sbjct: 63 GFSDLKLQLVAAQSSVNNNDYHEFDAGEGIAAIKNTMAARFESA---IEATQSGLNDNSV 119 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV + + I +G G+S VA D KF R + Y D+ + + + D+ Sbjct: 120 EKAVRKIYNSSSILVYGAGASGIVASDMYQKFMRVGKNINYISDLHVALAQLASFTSDDL 179 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP---LAREATLA-ITLDVPEDTDIY 234 ++LIS+ G+T + ++ ++A + + LT+ P +A++A L +T D+ E + Sbjct: 180 LILISNDGKTTEVSDIQKVADKFGIPTLLLTA--NPRSFVAKKADLVLLTQDIGEPSIRS 237 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 S ++Q+ V+DVL + + LKR EA Sbjct: 238 GATTSLISQMFVVDVLVFSYVSVHSDEVLKKLKRSNEA 275 >UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N1V0_9FIRM Length = 277 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 139/280 (49%), Gaps = 12/280 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN KI+ + +E+ +A+ IL + + + S ++ + S + RF + + Sbjct: 1 MNSYAKIKEAQSSYTSTEKVIAKYILENAADVLKCSAQSLGEKTGTSAAAIIRFSKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF + K+ LAQS ++ ++E+D + + K M T+ +D + ++ Sbjct: 61 NGFSELKMSLAQSKRAPEEKIDFIIDENDDIVTLADKCCRLNMNTVLKTYQLIDTNQLDN 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A+ L A I FG+G SA VA D K R V+Y+ D+ +Q + + D + Sbjct: 121 AIKKLIAANTIYLFGVGGSAIVAQDVEQKLTRIGKKVIYNKDLHVQLTFSESMNKEDAAL 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVP-EDTDIYMPMV 238 IS++G TK LVE+A++ + + +I++T PL++ + I L VP E+ +I M + Sbjct: 181 FISYSGTTKGLVEIAKMIKNKNVPIISITQFKPNPLSKLSD--IILQVPNEEKEIRMGAI 238 Query: 239 -SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR++ L + D+L G F+++L K+ L E++ Sbjct: 239 SSRISSLVMTDLLYYGV-------FKNDLTGNKDKLIETK 271 >UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C448 Length = 286 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/271 (26%), Positives = 135/271 (49%), Gaps = 8/271 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L+ I L L++++RK+A+ IL +P+N ++ S +A +VS+ + +F + + Sbjct: 1 MTLLDIITYSLPRLAENQRKIAQFILENPENVLNLSSQQLAEILDVSQSAIVKFSQKVGV 60 Query: 61 RGFPDFKLHLA-----QSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +G+P KL L+ Q L +G P+ ++ + DD++ K+ ++ + Sbjct: 61 KGYPALKLALSEIIGRQQLKDGAPHSALHNRIAPDDNLMVVAQKLAMEKNHSITETTKLI 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D R V+ + Q++++ G+G S A D K + + + D +Q + + Sbjct: 121 DFKQFERIVERIDQSQRVQIVGIGGSGLTAKDLSYKLQKIGITTLVESDHHVQIAAALTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTD 232 + DV ++IS TGR K+++ A +AR+ A VIA+T +PL + A + ED Sbjct: 181 NTHDVQIVISFTGRRKDMLTAANIARKQGACVIAITRDCDSPLGQLADYVLESIAEEDEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFR 263 + SR AQ T+ D++ RR AK + Sbjct: 241 RSSSISSRTAQNTLTDLIFMALLQRREAKAK 271 >UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C246_9CLOT Length = 292 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 22/289 (7%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L + L L+ +E++VAE +LASP S+ +A+ E T+ R C+++ Sbjct: 9 NILATTRFLLPSLTAAEKRVAEFVLASPKEVTRMSLKKLAVRCECGEATIVRLCKTIGVS 68 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTG--------KIFESAMATLDHVRHSL 113 G+ + K L L P V +++SV TG ++FE + L R +L Sbjct: 69 GYAELKSLLETQLQ--LPAV-----KEESVRLSTGQGMGEIVARVFELNILNL---RRTL 118 Query: 114 DKSAINR---AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSC 170 + +A+ A ++L+ A KI FF +G + A +F R D +Q ++ Sbjct: 119 EVAAVEEYENACEVLSTANKICFFAIGDAMFPCSYASLRFRRIGYDCYADSDADVQIVNA 178 Query: 171 MNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPED 230 N +GDV + ISH+GRTK +VE ++A+ A+ I +T AG + + + +V D Sbjct: 179 CNMKEGDVAIAISHSGRTKQVVEAMRIAKSRGAVTICITKAGKSELTKYSDIVLYNVTTD 238 Query: 231 TDIYMPMVS-RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 T + +++ R+A+ ++D + G + A L+ V E LK ++ Sbjct: 239 TTVDKEIIARRVAEQAMLDAVYMGVLQKMEANSFARLQEVSENLKVNKL 287 >UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4M2_9CLOT Length = 282 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 131/255 (51%), Gaps = 2/255 (0%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I+++ LS S++ VA+ IL +PD + +++ +A VSE TV RF ++ + F Sbjct: 9 IRTKYNTLSSSQKDVADYILTNPDKVMMNTLNEIAAACRVSETTVLRFLHKLNYNSYQLF 68 Query: 67 KLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 +++L Q L+ + V +V D+ + KI S ++++ R +D +++ V+ + Sbjct: 69 RINLTQELSKDNQETVYDDVGFQDTEDEIIDKIIHSTVSSITDSRQIIDPASVKAVVEKI 128 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A++I G+G+S +A D +K + + V ++D + + +++L SH+ Sbjct: 129 AGARRIVVAGVGASGFIAQDLYHKLIKLGLNAVCANDPHIMNILATGLDQNTILILFSHS 188 Query: 186 GRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G ++ ++++A +A+E V A+TS A + LA +A + E M SR+ Q+ Sbjct: 189 GESREVLDMAAIAKERRCQVCAVTSYAKSTLANQAGYLLCSSSRETMFRSDAMTSRIVQM 248 Query: 245 TVIDVLATGFTLRRG 259 +ID+L + G Sbjct: 249 VIIDILYVSLVIALG 263 >UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BCAC Length = 283 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 132/253 (52%), Gaps = 13/253 (5%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 LS E++VAE I+A+ N SI ++A E VS T+ R C + +GF D K+ L S Sbjct: 13 LSTKEKQVAEYIIANKKNMQSMSIQSLAQENKVSTTTILRLCHKLGYQGFSDLKIDLISS 72 Query: 74 LANGTPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKK 130 + N Y + +++ +DS+E+ K+ ++++ ++ +A A +L++++KK Sbjct: 73 I-NHKSYGTLLQEDIDINDSMETVNHKVGLIEKSSIEETCALVNLNAFKLANELISKSKK 131 Query: 131 IAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD-GDVVVLISHTGRTK 189 I +G GSS VA + + + V D +Q S +N D D+V++ISH+G Sbjct: 132 IVIYGAGSSGLVAKEFEYQLIKIKKDVNCHLDYSIQ-FSIVNTLDQNDLVIVISHSGENH 190 Query: 190 NLVELAQLARENDAMVIALTSAG----TPLAREATLAITLDVPEDTDIYMPMVSRLAQLT 245 ++L LARE IA+T G + LA I+ E +P+ S+++QLT Sbjct: 191 ECIKLLTLARELKVPTIAITKMGQSSVSSLAETVLHTIS---TEHVSRLIPIRSKISQLT 247 Query: 246 VIDVLATGFTLRR 258 VI++L T +++ Sbjct: 248 VINMLITNLFIKQ 260 >UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2J8J9_FRASC Length = 293 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 1/249 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +LE+I++ LS +E++VA +LA P IH S++ +A + S TV RFC+S+ RG Sbjct: 18 VLERIRALSASLSSAEQRVARQVLADPVAMIHQSVSELAQVSGSSPATVVRFCQSLGLRG 77 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + + KL L + + V+ D + GK+ A + L +D + Sbjct: 78 YQELKLALIRETLPVERQLVDEVSAADGPDEIAGKVLGGAASALTEAARGIDGGVLAAIA 137 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 DL+ A + F +G+SA +A DA + V ++ D +Q ++ + GD+ V + Sbjct: 138 DLVVAAPRTLFVAVGTSAPLAMDAAYRLTTVGVDARFAGDAHVQHVTARMLAAGDLCVAV 197 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG T + + A + A A+TS A +PL A+ + E M SR+ Sbjct: 198 SHTGSTAETLAAMRAAVDAGAHTAAITSFARSPLTELVRHAVVVGSRETAYRIEAMTSRI 257 Query: 242 AQLTVIDVL 250 L+V+D L Sbjct: 258 VHLSVLDAL 266 >UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=Propionibacterium acnes RepID=D1YCB1_PROAC Length = 290 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 7/256 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I + +E +VA VILA PD + +S + +A A VS TV RFCR++ Sbjct: 4 SLLPRIDMARTTMRPAEAQVAAVILAKPDWTLAASTSQLAEAAGVSPATVVRFCRALGMS 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRN------VNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ + + LA+ L+ T + R+ + DDS+ KI T+++ ++D Sbjct: 64 GYRELRTELARDLSRRTLELERSSVAEGTITLDDSLTQMITKIAFHEARTIENTARAVDA 123 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + ++ A + A FG+GSS VA D K R + + D +Q + C Sbjct: 124 DELEAVASAISIAPRTALFGVGSSGLVASDLSEKLERIGLVCQHHQDTHMQLVHAALCKR 183 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 V + IS +G T+ +VE +A+++ A +A+T +P+ R A + E Sbjct: 184 PCVALGISFSGNTQEVVEALTVAQKHGATTVAMTGLPDSPVGRLADHVLVTSARETQVRA 243 Query: 235 MPMVSRLAQLTVIDVL 250 M SR+AQL V+D L Sbjct: 244 GAMSSRMAQLAVVDFL 259 >UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enterococcus RepID=C0X1P6_ENTFA Length = 285 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 128/251 (50%), Gaps = 9/251 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN + I L+KSERKVA+ IL S ++ I+S++ + +ANV + T+ RFC+ + Sbjct: 14 MNYIYLINEHYPLLTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGF 73 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ +A+ + E S Y ++ +S + L +++ + + Sbjct: 74 SGFSDLKIEIAKEDFSKKK-------EQPSSGKYHDEVAKSLIEVLQSTSCLINEEKLTK 126 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A+ L+ QA + FG+GSS + D + F R + D Q +D D+V+ Sbjct: 127 AIQLINQASSLYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVI 186 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +G+TK+ + ++A+ N A ++A+T+ +P+ + A L + + E + + Sbjct: 187 IFSLSGKTKDTYDSLKIAKNNGAKILAITNYIHSPIGKSADLVLQTAIEEFLN-GGSLAG 245 Query: 240 RLAQLTVIDVL 250 +++QL + D+L Sbjct: 246 KISQLYICDLL 256 >UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VMT8_LACPJ Length = 282 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 7/280 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM-DT 60 ++L I ++LE+ SK+E+K+ IL + I S A +A VS TV RF +++ Sbjct: 3 SVLFTIHNRLENFSKAEQKIGRYILDHTNAVIKMSTAELAAATGVSTATVARFGKTLIPD 62 Query: 61 RGFPDFKLHL-AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+P KL L A+S + T Y +N DS+++ K+ T+D SLD +A+ Sbjct: 63 GGYPALKLRLSAESTVDQTLY--DEINPKDSLDAIKSKLALRITHTIDETNRSLDDAALQ 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A L+ + +GLG+S VA D KF R V++S D L + V+ Sbjct: 121 AASQLIADKASVYVYGLGASNVVATDFEQKFIRIGKAVIHSQDPHLLAVGMTTQRQNVVL 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPED--TDIYMP 236 +LIS++G + LA LA + VI L+ +A + L + A + + D E+ T Sbjct: 181 LLISNSGEKSESIRLANLAHSINVPVIVLSRNATSTLGKLADIILINDDSEENQTARAAA 240 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S +AQL V+D+L F + L +EA+KE+ Sbjct: 241 TTSLMAQLYVVDLLYYTFITNDYERHIKQLVASREAIKEN 280 >UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC5_9ACTN Length = 283 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 128/272 (47%), Gaps = 12/272 (4%) Query: 15 SKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSL 74 S +ER V + A P + S+ +A S ++ RFC+ + G+ +F+ L L Sbjct: 17 SPAERNVIAYVSAHPHEVVGLSVRGLADVTFSSPSSILRFCKRLGFAGYKEFQRELIAEL 76 Query: 75 A---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKI 131 A + +++ DDSVE GK+ +S + T++ +LD + + R L +A+ + Sbjct: 77 ALLGDKKDVALEDISMDDSVERIVGKVMKSNVRTIEATARTLDYTVLERCAARLKRARAV 136 Query: 132 AFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNL 191 FG+G+S VAHD K R + DD Q + N +GD+ + S++G T+ + Sbjct: 137 NLFGIGASRLVAHDLAQKLMRVDKECRLYDDWHDQLLCAKNMHEGDMAIAFSYSGLTQEV 196 Query: 192 VELAQLARENDAMVIALTS--AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDV 249 ++ A+ ++ V+A+T + LA A + + E M SR+AQL V+D Sbjct: 197 LDCTAEAQRHNCPVVAVTKVDGSSKLATMADAVLGVAASEPLVRSGAMASRMAQLMVVDA 256 Query: 250 LATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 L + + +R +K++ +KQ Sbjct: 257 LYAAYVA-------SDYERATHVIKQNYIEKQ 281 >UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=Lactobacillus RepID=Q1WQV4_LACS1 Length = 274 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 8/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L I++ LS+ ERKVA +L +P +I +A +A VS T+ RF R M+ Sbjct: 1 MNLLNNIEAIFSTLSRQERKVALKVLQNPQEVQSMNITKLAKKAGVSNATITRFVRRMEC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFKL LA S A+ +P V + D S K++E L LD I+ Sbjct: 61 SDFHDFKLKLAISAAS-SPEVPVSSESD----SMGDKVYEFYQKVLQGTWKQLDTDTIHN 115 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V +T+A+++ +GLGSS A + + R + + D + + + DV++ Sbjct: 116 IVHAITKARRVYVYGLGSSGYTAQEFTQRLIRMGIAAFCTVDSHMMFIDSTIVNSDDVII 175 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T ++ LA++ +I++T +PL +T + + D + S Sbjct: 176 AISQSGNTDDVNVACSLAKQKGTKIISITGFYQSPLIELSTWSAVVKNSNFVDNTRFINS 235 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +LA + VID++ L +++ + + E + + + K Sbjct: 236 QLAIVYVIDIIT--MELMEKSEYSSTMNKTVELIMDRKLSK 274 >UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=Firmicutes RepID=A6LRG7_CLOB8 Length = 291 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 135/250 (54%), Gaps = 3/250 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+KI + L ++E+K+A+ I+ + + I +++ +ALE++VSE T+ RFC+ D +G Sbjct: 16 VLDKILCIYKSLHEAEKKIADYIINNKERVIEMTVSELALESSVSEATIVRFCKKCDLKG 75 Query: 63 FPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F D K+ +A+ + N + ++ ++ ++ ++S I + + L +++ I R Sbjct: 76 FYDLKIKIAKEMVNLKSSNISNELDSNNIMQSLQN-ILANKIEELKQTISMMNEGNIKRI 134 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++ + A+ + F +G++ VA D KF + + V + Q + DVV++ Sbjct: 135 LEAIKGARIVQFAAVGNTIPVAMDGAYKFNQLGISSVTNTIWETQLAFSYTLTKEDVVIV 194 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G +K LV L ++A E A I++T+ +P+A ++ I E + SR Sbjct: 195 ISNSGASKELVALLEIANERQATTISITNHENSPVANKSKYHINTSTREKLFLDEFSFSR 254 Query: 241 LAQLTVIDVL 250 ++ + VI++L Sbjct: 255 VSAMVVIEIL 264 >UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DJX2_STACT Length = 288 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 127/253 (50%), Gaps = 4/253 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ I+ Q++HL+K+E+ +A+ +L P+ + S + S TV R + + Sbjct: 5 HLIIHIREQMKHLTKNEQHIAQFLLEHPEKVLEMSAQTLGDVTKTSSATVIRCAHKLGFK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D KL L+++L + + + +D+S K+ A TL+ L+ A+ Sbjct: 65 GFVDLKLSLSRNLPQHEAHNYKEIAQDESPREIKRKLLSRAAYTLETTEVLLEDQALEAL 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDD--IVLQRMSCMNCSDGDVV 179 VD L +KI FG+G+S VA D KF R + V+ S D ++ ++ + D + Sbjct: 125 VDKLYDVQKIVVFGVGASHIVAEDIYQKFTRAGMEVIQSADAHVLATVLAGYHKKDNVLF 184 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 + +S++G + + LA +A A V A+TS + + LA EA + + D + + + Sbjct: 185 IGVSNSGHNQETLRLAHVAHYYGATVAAITSRSDSKLAGEADIVLLHDASSEKSLRLAAT 244 Query: 239 SRL-AQLTVIDVL 250 S L AQL +D+L Sbjct: 245 SSLIAQLMTVDIL 257 >UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=Q7MD38_VIBVY Length = 278 Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 7/273 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++S +E SK R VA+ IL + + +I +A SE TV R CR M + Sbjct: 6 NLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DF++ LA L+ T +N E D + +SA+ +L +D+ ++ R Sbjct: 66 GYSDFRMALAVDLSQ-TESRQQNHIEGDICDVSA----QSAVDSLQDTAKLIDRKSLARI 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ + QA+ I G+G+S+ V + R + +D L MS S GD+ Sbjct: 121 VERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G TK ++ A LA + D V++LT+ +PL+ +T + PE S+ Sbjct: 181 VSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASK 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 + L ++DVL L +++D+++ E + Sbjct: 241 VGALLLVDVLVNSL-LESYPEYKDSVQETAEVV 272 >UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A8S9N1_9FIRM Length = 321 Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 138/273 (50%), Gaps = 9/273 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++ LS +ER++A+ IL +PD +I +A + S +V R CR + + Sbjct: 36 NVLLRLREVQPSLSSTERQIAQFILENPDETTTLTIRDLARRSFSSPSSVVRICRVIGFQ 95 Query: 62 GFPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+ + + L LA NG+ + +++ DS++ K+ + +L + L Sbjct: 96 GYKELRHALTLELATLGENGS-HREKDITPQDSLQEIVDKVTHKNIQSLLDTQRLLLLDE 154 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + + V+L+ A+ + FG+GSS VA D KF R + P V ++D Q + N + D Sbjct: 155 LEQCVELIANARTVLLFGIGSSLCVAKDTYLKFLRLDKPCVVNEDSHSQLLQARNATAQD 214 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 V ++ S++G+T +++ + + A VIA+T + +A+ A + + E Sbjct: 215 VGIVFSYSGQTMEMIQCIKEMKAGGAPVIAVTRYYPSEVAQLADHVLYVAANESLFRNGA 274 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRV 269 M SRL+QL V+D+L T + R D ++R+ Sbjct: 275 MSSRLSQLNVVDILYTAYASR---NHEDTMRRL 304 >UniRef50_Q2J952 Transcriptional regulator, RpiR family n=3 Tax=Frankia RepID=Q2J952_FRASC Length = 319 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 115/232 (49%), Gaps = 6/232 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + I++ L L SE++VAEV LA P + + S A +A A S TV R C+ + R Sbjct: 19 GLFATIRAALPGLLPSEQRVAEVCLARPGDVVEWSAAQLAEAAGTSTATVVRACQHLGFR 78 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDS---VESYTGKIFESAMATLDHVRHSLDKSAI 118 GF F++ LA+ +G + + D+ VE +F +A A L LD+S + Sbjct: 79 GFQHFRVELARE--SGAAALRGEIGRTDAADPVERLVDTVFGAATAVLADALGPLDRSRL 136 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AVDLL +A ++ G G SA VA DA +F P D + Q ++ + DV Sbjct: 137 APAVDLLDRADRLLVIGNGGSAPVAQDAALRFLGMGRPAEAPGDSIAQELTARLLAPSDV 196 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPE 229 ++I+ +G + + A+ AR A VI +TS PLA A +++ + P+ Sbjct: 197 CLVITSSGANEPSLRAAEAARTAGAAVIGITSYTAGPLAEIADISLVVGAPD 248 >UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDH7_9FIRM Length = 281 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 143/280 (51%), Gaps = 15/280 (5%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N E +Q L+KS R VAE ++ A + SI+++A E V+E TV RFCR++ Sbjct: 4 NFWELLQQHQGDLTKSGRTVAEYLVQHAAEAQYLSISSLARECQVAEATVFRFCRALGFE 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA----MATLDHVRHSLDKSA 117 G+ + ++ LAQ+ A G VN+ ++ + ++ T + E A M ++ +++L A Sbjct: 64 GYHEMRIALAQANATGV-LVNQ---QEPAPDADTATLCEHASALFMTAINGTQNALSPQA 119 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +++AV LL A+++ G G S A A + +F D +Q M+ ++ D Sbjct: 120 VDQAVALLHSARQVFCMGQGGSMAAAKEICARFACITNKFRAVADSHMQVMAASLMTEQD 179 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT----SAGTPLAREATLAITLDVPEDTDI 233 VV+ +S++G T++L+E + A+ N A +I +T S G LA L + P D+ Sbjct: 180 VVLFVSYSGATRDLMETLRTAKANGAKIILITHYEDSPGAKLADIVLLCGAQESPLDSG- 238 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 +P+ ++A L V +VL + L + +R EAL Sbjct: 239 SIPI--KVAVLYVAEVLVLRYILDDKPGSTEAQERTTEAL 276 >UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=Firmicutes RepID=B1R0U2_CLOBU Length = 284 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 131/253 (51%), Gaps = 5/253 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++++ I ++ ++E+K+A+ IL I +I+ +A A S+ TV RFCR + + Sbjct: 6 SIIDTIYAEYNSFFEAEKKIADYILKYGTKLIEMTISELAEAAGTSDATVTRFCRKCNMK 65 Query: 62 GFPDFKLHLAQSLANGTPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF K+ LA+ L+ V+ +V+E++ ES +F + + + ++++ Sbjct: 66 GFHHLKITLAKELSESQKEDTRVSGDVSEENIKESLNNILF-NKIEEMKQTILTINEEKF 124 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + +L A + F +G++ VA D KF + V V + Q N + DV Sbjct: 125 KEILQILRNAGIVQFVAVGNTIPVALDGCYKFNQVGVASVANTIWETQIAYTYNLKENDV 184 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 V+ IS++G +K L+++ ++A+E A+ IA+T S +PLA+ + I E + Sbjct: 185 VIAISNSGASKRLIDVIEIAKEKGAVTIAITNSDKSPLAKLSNYHIKTATREKLFLEEYY 244 Query: 238 VSRLAQLTVIDVL 250 SR++ +TVI++L Sbjct: 245 FSRISAMTVIEIL 257 >UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=Clostridium RepID=A6LUR0_CLOB8 Length = 281 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 16/284 (5%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L+ I+ + + E+ +A+ ++ + + I S +A S PTV RF + + Sbjct: 1 MNVLQYIKQNYDSFTDREKLIADYLIETKERIISMSARDIAEATKTSAPTVVRFAKKIGF 60 Query: 61 RGFPDFKLHLAQSL-----ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 + KL L+ ++ A + + ++ D ++ I +S + ++ LD+ Sbjct: 61 NTLNELKLKLSINISKEEEAGAIQF--QYLDNDLGTKNIIYGIKQSVDSIMEQTVSLLDE 118 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 +++A++LL AK I F +G S V D K R N + + D LQ S + + Sbjct: 119 ECLDKAIELLISAKNIYIFSVGVSGLVGQDFYYKLSRMNKRCICNTDTHLQITSSVLLEE 178 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGT--PLAREATLAITLDVPEDTDI 233 GDV + IS++G TK +++ + AR VIA+T A +A + + I + E + Sbjct: 179 GDVALAISYSGETKEVIKCVKNARNRKVPVIAITKASVNNTIADISDIVIRIPAVEKSIR 238 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + SR++QL +ID+L G R+N+K V+E L +R Sbjct: 239 EGAISSRISQLAIIDMLYIGM-------IRNNIKEVEEKLISTR 275 >UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n=22 Tax=Gammaproteobacteria RepID=A4TMJ1_YERPP Length = 292 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 8/213 (3%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ + + L++S +++A ILA P SIA ++ E T+ RFCR++ +G Sbjct: 13 ILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKG 72 Query: 63 FPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F DFK+ LA +A + ++ +V E D + K+ + L + L ++ Sbjct: 73 FQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESV 132 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPV--VYSDDIVLQRMSCMNCSDG 176 + V +L A +I FG+GSS A DA K R + V ++ + + S MN G Sbjct: 133 EQVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMN--PG 190 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALT 209 DV + ISH+G + V+ +LA+E A +ALT Sbjct: 191 DVAIGISHSGTSAETVQALKLAKEAGATTVALT 223 >UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R285_BRAHW Length = 285 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 136/284 (47%), Gaps = 3/284 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN I+ + E SK+ +K++ IL++P I + ++ VS +V RF + + Sbjct: 1 MNAYLIIRDKYEDFSKAYKKISNYILSNPKEVIKLTALDISKNCGVSSASVVRFAKDLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN--VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G + K+ +A + N N ++ DD+VE KI ++ + + LDK A+ Sbjct: 61 KGLDELKISIASKNGDDDNKYNINTIISADDNVEELCNKIMLLIKSSNEDFFYQLDKEAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +A L+ A+ I G+G+S+ A+D +K R N + +D L ++ DV Sbjct: 121 EKAFKLIRNARNIYMLGIGASSLSAYDLFHKLKRANFNAFFYEDAHLNAEFFNYLTEEDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPM 237 V+ S++GRT ++ ++A A +IA+T T L++ A + IT+ E+ + Sbjct: 181 VIAFSYSGRTNEVIYPVKIASSKKASIIAVTRKKTNNLSKMADVLITVPNNEELTRMGAI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 S+ + L V D+L G + ++NL +E + D + Sbjct: 241 TSKYSSLIVSDLLYFGAIQKDFENIKENLINTSILTRELKLDDE 284 >UniRef50_B7IEI4 Transcriptional regulator, RpiR family n=1 Tax=Thermosipho africanus TCF52B RepID=B7IEI4_THEAB Length = 290 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 126/251 (50%), Gaps = 12/251 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 + ++EK+++ + L +ERK+A I+ PD+ IH SI+ ++ A V E T++R R + Sbjct: 17 LGIIEKLKAIYDQLKPAERKIARYIINYPDDVIHHSISELSELAKVGEATISRISRKLGY 76 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GF K+ LA+ L++ + E+ T + + +L+ + ++++ IN+ Sbjct: 77 KGFQALKIELAKELSSIS-----------FEETKTNSVISEVIESLNKLSKIINENEINQ 125 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + ++ KI FFG+GSS VA F R Y +D +Q +S + VV Sbjct: 126 IAKKVVESNKIFFFGVGSSGVVAEYGALLFTRGGFFANYYNDPHMQVISAAGMDNQTVVF 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G ++ V+ ++A+++ A +A+T E P + MP +S Sbjct: 186 GISSSGNIRDTVKSMKVAKDSKAFTVAITGGYESKITEVVDKTIYIPPAGLERGMPKISP 245 Query: 241 L-AQLTVIDVL 250 + +Q++++ ++ Sbjct: 246 IVSQISILHMI 256 >UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA31_9ACTN Length = 281 Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 132/286 (46%), Gaps = 12/286 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++L +++ ++ S +ER++ E IL P++ SI +A A VS T+ R C+ + Sbjct: 2 VSLLVRLKQYRDNASPAERELIERILDDPESISGLSIHELAAYAFVSPSTITRLCKKLGL 61 Query: 61 RGFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 +G+ +F+ L LA + ++ D+ K+ + +L V D Sbjct: 62 KGYKEFQHLLIYDLALLRESSSSKIEDLAPTDTSRQTIEKVTRDNIDSLRLVEKLNDPET 121 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 VDL++ A+ I FG+G+S A D K R V DD Q + N D Sbjct: 122 YEACVDLMSDARTINLFGMGASLLSARDMHYKLLRIGVSCNLIDDWHGQLLCASNSGPED 181 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAG--TPLAREATLAITLDVPEDTDIYM 235 + + IS++G T+ + ARE VIA+T + + LAR+A + + E Sbjct: 182 LSIAISYSGLTEEVNVCVGRARERGGKVIAITGSAFDSKLARQADEVLLVGSTEPLMRSA 241 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 M SR+ QL VID+L F R A+F E L++++ KQ Sbjct: 242 AMASRIGQLGVIDILFKSFVNRNYARF-------SEVLEQNQIRKQ 280 >UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JBJ8_FRASC Length = 299 Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 126/278 (45%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + +++ L L+ S RK+ ++IL P +H ++ +A S TV RFC+ + + Sbjct: 22 GTIAHLRACLPTLTPSGRKIGQLILDDPREIVHLTVTDLADRTGTSVATVVRFCQDLGLK 81 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D K+ LA ++ V DS + KI S + L ++D++A RA Sbjct: 82 GFADLKIRLAGEAIPPERGLHEAVTHADSPATILEKILHSTESALSETTRTVDRAAFTRA 141 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L A ++ G G+SA +A DA +F + D +Q ++ + Sbjct: 142 VDALQCADRVLLIGAGTSAPLAQDAAYRFRTLGLLAEAPADAHVQHVAARLLPPASACLA 201 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISHTG+T+ + A AR A IALTS +PL R A +A+ E M SR Sbjct: 202 ISHTGQTRETLAGAAAARAAGATTIALTSFFRSPLTRLADVALVAGSSETNYRVEAMSSR 261 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + TV+D L L + + + + E L E R Sbjct: 262 IIHATVLDALFVAVHLAQPDRAQKAQELTAEVLTEHRI 299 >UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ALE3_SEBTE Length = 282 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 3/255 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ KI S + + SE KV I +P++ + +I ++ + E T+ RFC+ + Sbjct: 7 NLFNKINSLKKSFTASETKVFNYIEKNPESVVRMNIRELSNAIDTGETTIIRFCKKTGFK 66 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVN--EDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+ DFK+ L SL+ ++ D++ S I+ ++ L ++ ++ Sbjct: 67 GYNDFKISLISSLSKEKQSNKYKIDILADENYNSIAEGIYNNSFNVLKDTLSLINNEILD 126 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + ++L+ AK I F G+G S A DA KF R V D L +M+ DV+ Sbjct: 127 KCINLINNAKHIEFIGIGHSNLTAQDAKYKFLRIGKSVASHSDPHLFKMAASISDREDVI 186 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 + IS TG T+ +++ Q A+ A IA+T+ T + + A + E+ Sbjct: 187 IGISQTGETREVIDSLQSAKVRGAKTIAITNNDKTEITKYADYVLLNGFNEELLETGSFS 246 Query: 239 SRLAQLTVIDVLATG 253 R++QL +I++L G Sbjct: 247 ERISQLFIIELLYLG 261 >UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693BD8 Length = 265 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 16/266 (6%) Query: 21 VAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPY 80 +A I+ + I +A + S T++RFC+S+ +GF DFKL L+ LA Sbjct: 2 LASYIVEHAHEVVSMGITELAERSQTSPATISRFCKSLHFQGFTDFKLKLSGELA----- 56 Query: 81 VNRNVNEDDSVESYTGKIFESAMATLD--HVRHSLDKSAIN------RAVDLLTQAKKIA 132 + +E + G ++ ++ H+R D + +N +AV L A++I Sbjct: 57 --KQPSEHSYQDIVAGNPLSEIVSAIEANHLRSIADTTQLNDIKQLQQAVSALKNARQID 114 Query: 133 FFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLV 192 +G+ +S VA D K R D +Q S N + DVV IS++G T+ + Sbjct: 115 LYGVATSGIVAQDFYQKLVRIGKRTSVFSDPHMQITSASNLGENDVVFAISYSGDTEETI 174 Query: 193 ELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLA 251 + + A+E A+ I+LT GT PLA + + + E+ M SR+AQL VID+L Sbjct: 175 QALRCAKERGAVTISLTKFGTNPLANLSDIRLFASTLEEGMRRGDMASRIAQLHVIDILF 234 Query: 252 TGFTLRRGAKFRDNLKRVKEALKESR 277 T + L+R + +++ R Sbjct: 235 TSLVSEEFDELIPRLERSYQLVRKYR 260 >UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=Deinococcus RepID=Q1J2N3_DEIGD Length = 290 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 19/254 (7%) Query: 13 HLSKSERKVAEV-----ILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFK 67 HL + E+ A V IL P+ + +IA ++ A S+ TV R + + G+ +FK Sbjct: 16 HLLREEQGAATVRVIDQILMDPERFLSLTIAELSEAAGTSDATVVRLVQHLGFGGYQEFK 75 Query: 68 LHLAQSLANGTPYVNR----NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 L L+++LA V+R V D+ + KIF+S+ LD L+ A + AV Sbjct: 76 LQLSRALA-----VSRKADLTVEPQDASVTILRKIFDSSNTALDDTLEHLNLEAFSAAVQ 130 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 +T A+ I G+G+S VA + R + S D +C DV++ +S Sbjct: 131 AMTLARHIELIGMGASGVVALSGQYRGLRLGLSCRASTDPGTFLSTCSLLEPTDVLIAVS 190 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMP--MVSR 240 +G +V+ A+LAR+ A+V+ALT G TPL++ +T+ P D Y P + ++ Sbjct: 191 FSGTRPQVVQAARLARQAGAIVVALTGLGRTPLSKVVHHTLTVSAPGDR--YRPEGLATQ 248 Query: 241 LAQLTVIDVLATGF 254 + Q+ ++D L T Sbjct: 249 IPQVAILDALFTSL 262 >UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU66_9CLOT Length = 285 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+S + L++ E+KVA+ +L P + +I ++ V + TV RFCRSM+ Sbjct: 5 NLLISIRSCYDRLTRLEKKVADYVLQHPQEVVKMTINELSNSCGVGDTTVFRFCRSMNVG 64 Query: 62 GFPDFKLHLAQSL-------ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 G+ DFKL LA S + G + ++ + + + +G ++ TL SLD Sbjct: 65 GYQDFKLALALSSNVNDMLDSKGEFNLAQSHDLHELAQQVSGVFTDAVNETLS----SLD 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 AI+R V+ + A+ + FG G+S A N+ R + Y+ D+ +Q S Sbjct: 121 YDAISRTVEAILNARSVHLFGFGNSGVSALMMQNRMMRILPNIFYTSDVHMQLTSAATMQ 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 + V ++ ++G TK+ + +AQ+ E A + +T TP A A + + E Sbjct: 181 EDSVAIIFCNSGITKDSIRIAQMTHEAGAFTVFITKFMQTPAAPYADVLLCSGATEGPIQ 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + +Q+ ++ +L + R + ++N + A+ E + Sbjct: 241 GGSISGVASQMYIVMLLYSELFRRMETRAQENKIKAAHAIAEKKL 285 >UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n=48 Tax=Gammaproteobacteria RepID=B5FDJ7_VIBFM Length = 283 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 7/257 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+LEKIQ+Q +LS + K+ + IL P + S A+A + VS+ ++ + + + Sbjct: 1 MNILEKIQNQRSNLSSNGIKILDFILDDPASISSYSSQALAAKVGVSQSSIVKLTQRLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPY------VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 +GF FKL + + L ++ +N DDS + K+ + L ++++ Sbjct: 61 KGFTAFKLAIIEDLGRKQAILEPERPIHNKINSDDSSLTIAQKLVQEKTHALIATTNAIN 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 S LL QA++I G+G SA A D K + + + D +Q + + Sbjct: 121 FSEFELVTTLLNQAQRIQIVGIGGSALTAKDLAFKLLKIGMTALTEQDSHVQIATANTLT 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDI 233 DV ++IS++G K ++ AQ A + A VIALTS +PL + A I E Sbjct: 181 KQDVQIVISYSGSRKEILMAAQTAMDKGATVIALTSTKKSPLRKLANFCIDTIADERQFR 240 Query: 234 YMPMVSRLAQLTVIDVL 250 + SR AQ + D+L Sbjct: 241 SSSISSRTAQNVITDLL 257 >UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax=Staphylococcus RepID=A5IV96_STAA9 Length = 290 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 141/289 (48%), Gaps = 8/289 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +I SQ +++K+E+K+A+ IL SP I +A ++S +V RF + + Sbjct: 3 NVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSKKITDG 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D K+++++ + + N + ++S ES K+ L+H + L+ I++ Sbjct: 63 GFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDKTIDQI 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFR--FNVPVVYSDDIVLQRMSCMNCSDGDVV 179 L +++ I +G G+S VA D K R N+ +V I ++ N +D V Sbjct: 123 CHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSNDS--V 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 +LI++ G + + ++ + +I +TS P+A+ + + +T ++ +++M Sbjct: 181 ILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHMGAT 240 Query: 239 SRL-AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLS 286 + L AQ+ ID+L + D + + K AL R K L N++ Sbjct: 241 TSLFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYR--KHLSNIN 287 >UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBX8_9LACT Length = 285 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 4/282 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+ + L +SE+K+AE IL P I S +A EA S V RFCRS+ + Sbjct: 4 NVLLTIREKKITLPQSEKKIAETILRDPVKVIQMSATDLATEAGSSSAAVIRFCRSIGIK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + KL L+ + ++ D+++E K+ + + LD I R Sbjct: 64 GFTELKLQLSADSQGIKDNLYTDILADENLEQVKKKMLINTNHLFKETNNVLDTKQIERV 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +LL ++ I +GLG+S VA D KF R VV S D L S + V Sbjct: 124 SELLHESSIIYLYGLGASHIVASDIQQKFSRMGKIVVCSLDQHLLVTSMAVAGENAVFFG 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYM-PMVS 239 +S++G K ++ L +A+E +ALT + L+ EA +A+ + + +S Sbjct: 184 VSNSGEKKEVLALMIMAKELGLKTVALTNNTENALSLEADIALKTAFAHEAPLRSGATIS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE--SRFD 279 L Q+ +D+L + + NL++ K A++ +FD Sbjct: 244 LLTQMYAVDILFYDYASKNYDLTVTNLEKSKAAIQRYNQKFD 285 >UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=Bifidobacterium RepID=B7GUA9_BIFLI Length = 289 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 5/284 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 + + E+I L +ER VA+ I + A ++ MA A+VS+PTV RF R + Sbjct: 5 VGIRERIDHVYPSLRPAERAVAQYIRDHIEEAADLTVGQMADIAHVSQPTVIRFARKLGF 64 Query: 61 RGFPDFKLHL----AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ + + L A+ P ++N D + K + A A +D + +LD Sbjct: 65 GGYRELRYVLRHPAAEHKVTFNPLDGFDLNPWDGEDEIPSKAADGAKALIDELHSALDPK 124 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 A +AV LL +++ I FG+ +S A D K + + D LQ++ + + G Sbjct: 125 AYRKAVALLAESEFIDIFGVENSLTPAMDLFTKLGYLGLTCRLNTDAYLQQIGAGHLTHG 184 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 V V SH+G + + V+ +LA+ + A IA+T+A G PLA A + + T Sbjct: 185 AVAVAFSHSGSSADTVKALRLAKSHGAKTIAITNAIGAPLASWADVTLLTGRDSHTIYGN 244 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 + S +A ++D+L G L +F L +++ F+ Sbjct: 245 AIFSCVADTALVDMLYMGVILSDYGRFSTALDESGRMIRDRVFE 288 >UniRef50_P46117 Uncharacterized HTH-type transcriptional regulator in aarA 3'region n=5 Tax=Enterobacteriaceae RepID=YARA_PROST Length = 282 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 8/250 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++S L +E+++A +L S DN + ++A +A A VS +V RF R M RG+ D Sbjct: 9 KLESLLNRGKGTEQRLARFLLDSRDNFVAMNVAELAQAAGVSSASVIRFTRQMGYRGYSD 68 Query: 66 FKL-HLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 FK+ +L+ ++ ++N D E K + + ++ LD + ++ Sbjct: 69 FKVDYLSDEKQYKAESLSGSLNPYDDTEQIIAKSGQMFITAIEKSLELLDPNTMDEIAQK 128 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + +AK+I FG+G+SA VA+D K R N ++S D+ +Q N D+V+ I+ Sbjct: 129 IVEAKRIVLFGVGTSAIVAYDIFYKLIRVNKYALFSPDLHVQLSYSSNVDADDLVIAITA 188 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAGTPLA-REATLAITLDVPE---DTDIYMPMVSR 240 G T ++ + +LA + I LT G A R A L + E T + P V Sbjct: 189 KGNTPDINHMLKLANKKGCSTIVLTRFGQDEAVRLADLVLPYFYDEQLFQTGVITPQV-- 246 Query: 241 LAQLTVIDVL 250 Q+ V D L Sbjct: 247 -LQMVVFDTL 255 >UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9S0_9ACTN Length = 282 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 5/244 (2%) Query: 12 EHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLA 71 + +S SE+++ IL P+ + +I +A VS T++R R + G+ +F+ +L Sbjct: 15 DRVSTSEQQIITYILKKPEAIVGVTIHELAQMTFVSAATISRLLRKLSLGGYKEFQQYLI 74 Query: 72 QSLANGTPYVN---RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQA 128 LA+ ++N DS + KI + ++ + I+ +L+ A Sbjct: 75 YELASMKTSRQSSIEDINPKDSTKQIMFKIMRKTIESITLTEKLNNPKTIDSCAELIHNA 134 Query: 129 KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRT 188 + I FG+GSS A D KF R N+ S D +Q ++ N SDGDV + S++G T Sbjct: 135 RHITIFGMGSSLLSAQDLQYKFLRANIDCTLSADWHMQLIAANNMSDGDVAIAFSYSGVT 194 Query: 189 KNLVELAQLARENDAMVIALTSA--GTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTV 246 + A+++ VIA+T + T L R A + + + E SR+ QL + Sbjct: 195 PETLRCVHAAQDHGGKVIAITRSVNSTELVRHADIVLYVASTEPLLRSSAGTSRITQLMI 254 Query: 247 IDVL 250 +D L Sbjct: 255 VDTL 258 >UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=Gammaproteobacteria RepID=B4EZY5_PROMH Length = 295 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 9/271 (3%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 L++ +++A+ IL P SIA ++ E TV RFCR++ +GF DFK+ LA Sbjct: 25 LTRVSQRIADYILFHPTEVTQLSIAQLSQATKAGEATVVRFCRTLGYKGFQDFKMDLAIE 84 Query: 74 LANG----TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAK 129 +A +P ++ V+ D + + K+ + L + LD + AV+ L A Sbjct: 85 MATSDNDESPILDAEVSHQDDIHTIGLKLQATINNVLSETLNLLDMQQVQGAVNALLSAN 144 Query: 130 KIAFFGLGSSAAVAHDAMNKFFR--FNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGR 187 + G+GSS A D NK R + V V ++ + + S + GDV + ISH+G Sbjct: 145 YVFICGVGSSGITAEDLKNKLMRIGYRVDAVTNNHFMYMQASLLKS--GDVAIGISHSGN 202 Query: 188 TKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTV 246 + V +LA+E A IALT + G+ + A + + + ++ AQL V Sbjct: 203 SLETVHALKLAKEAGASTIALTHNLGSQIMEYADHHLINGNRQGKLQGDSIGTKTAQLFV 262 Query: 247 IDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +D+L T + ++ R ALK++ Sbjct: 263 LDLLYTLLVQAKPETVKEQKLRTLNALKQTH 293 >UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15N75_PSEA6 Length = 282 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 135/259 (52%), Gaps = 5/259 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ KI++ + LS SE K+A+ +L+S + S +A VS+ +V +F + + Sbjct: 1 MSTFTKIKAIKDTLSNSELKLAKFVLSSSNAVRDLSSQELANVVGVSQSSVVKFAQKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 +G+P FKL + +L N T ++ + +DS + + K+ S +A L ++ +++A Sbjct: 61 KGYPAFKLGVIDAL-NSTASEGNLHGKITLNDSFKQVSEKLLSSKVAVLTETKNLNEEAA 119 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 ++AV+LL AK+I GLG SA V D K + + + D+ Q S+ D Sbjct: 120 FHQAVELLKSAKRILICGLGGSALVGKDFSYKLQKLGMLAIEEPDMHAQLAFAATLSEND 179 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMP 236 +V IS +G T+ +V + + A++N VI +T G TP++ A + + E++ Sbjct: 180 LVFAISESGSTREIVNVVKQAKQNSCKVITVTRYGATPVSDLADIKLYSVAEEESARLSS 239 Query: 237 MVSRLAQLTVIDVLATGFT 255 +++R AQ +ID+L T Sbjct: 240 IMARTAQEFIIDILFIAIT 258 >UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELR8_PEDAC Length = 280 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 11/272 (4%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 +++QL +K E++VA I+ P I S+ +A + S TV R + + G P+ Sbjct: 10 LKNQLGDFTKKEKQVARFIIKYPQAVIDSNAKQVADQVGTSAATVIRLAKRVCKNGLPEL 69 Query: 67 KLHLA-QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 K L +++ N + ++ D++E K+ T++ ++ A+ A L+ Sbjct: 70 KERLKNETMVNDKFF--EEIDPADTLEVMKQKMEYRINHTIEQTNRTVKGGAVRNAAKLV 127 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 QA + +G+G+S VA D KF R PV + D+ L ++ VVVLIS++ Sbjct: 128 DQADVVYTYGIGASHLVADDLQQKFGRLGKPVAQTQDVHL--LAAEMSKGRGVVVLISNS 185 Query: 186 GRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAIT-LDVPEDTDIY-MPMVSRLA 242 G TK ++L AR D V+A+T +PLAR++T+ + D E + S +A Sbjct: 186 GETKETLQLLGAARALDLPVVAITRVLSSPLARQSTVVLAHSDSGEGNQLRSAATTSLMA 245 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 QL V+D+L F F DN+ ++ ++ K Sbjct: 246 QLYVVDLLYYSFL---KLHFEDNVDQLTKSRK 274 >UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0W9_9CLOT Length = 310 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/282 (25%), Positives = 143/282 (50%), Gaps = 8/282 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I ++ LSKSE+KVA+ I A ++ +A EA VSEP++ RF +S+ G Sbjct: 31 LLFRIATKYMALSKSEKKVADFIKNFNGKAEKLTMKKVAKEAGVSEPSIMRFSKSIGLDG 90 Query: 63 FPDFKLHLAQSLAN--GT--PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F + K L ++ + GT P ++N +D+++ GKI + ++ + S+ + Sbjct: 91 FNELKYCLMKTKKDDEGTMKPLHGFDINREDTIDMIPGKIVMTVENQINSMLESISLKSY 150 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + ++ + AK + + + +S + A+D K + V D LQ++S N + DV Sbjct: 151 SDMINCIINAKNVDIYSVENSVSSANDLATKLLYLGINVKMYTDSYLQKISAYNLTSEDV 210 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 + IS++G +K+ VE+ + A++ A + +T+ + + + A + I D +Y Sbjct: 211 AIGISYSGNSKDTVEMIKTAKKRGATTVVITNYKDSKIVKYADILIC--TSSDQMLYGDA 268 Query: 238 V-SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + SR QL + D++ G K+ + L + ++A++ + Sbjct: 269 IFSRAIQLVINDMIYMGIIHSDYDKYIEILNKNEKAIRNRGY 310 >UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2D0_9BACL Length = 284 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 9/284 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++++ LE L +SERK A+ IL + SI A+A +A S + R CRS+ Sbjct: 5 SVLTQMEAMLEQLPESERKAAQYILTASAEVSGLSIHAVADKAGTSAAAITRLCRSLGLS 64 Query: 62 GFPDFKLHLAQSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GFPD K+ L S+ N P ++ +++++ K +++ + + L I Sbjct: 65 GFPDLKMRL--SVDNAKPQRPGYYDIERGETIQNVIQKTVSNSLQAIQDMMLHLQPELIE 122 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + VD +A I +G+G+SA VA DA K+ R D L + + G + Sbjct: 123 QVVDSFREASVIHMYGVGASAIVAADAAQKWLRLGKQAFALQDEHLIAAALASAPPGALF 182 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAI-TLDVPEDTDIYMPM 237 + IS++G TK +++L ++A++ I L+ G +A A L + T PE T Sbjct: 183 MGISYSGNTKEVLQLFRVAQKYGVRTIGLSRFGNHKVAELADLMLYTPQAPEATLRSGAS 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 SRLAQL +ID+L F ++ + + R+ + + + F KQ Sbjct: 243 SSRLAQLVMIDIL---FFAYASTQYEETILRLSQTHEATAFLKQ 283 >UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus crispatus MV-3A-US RepID=D0DKU0_9LACO Length = 284 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 127/253 (50%), Gaps = 3/253 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+ ++I L KS R +A+ +L +P ++ + + N S +V RFC+ ++ Sbjct: 1 MNVRDRILENYTELKKSSRIIADAVLENPKILLNKNAKEIGNYTNTSAASVIRFCKQLNY 60 Query: 61 RGFPDFKLHLAQSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G DF++ LAQS + ++ V +DD + K+ S + + ++D + Sbjct: 61 KGLKDFQIDLAQSTVKQSQLKPIDMIVTKDDKADEVMTKLRVSLSQNFEDLSKTIDIKDL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV L+ +++ + G+G+S+ A D K R V Y+DD+ + + DV Sbjct: 121 QKAVSLIKKSRAVYIAGIGASSFSAKDLFYKLIRSGKTVFYNDDVHIALERIYYSTPKDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 ++ S++G T+ L+ + A++N ++A+T + +PL++ A + + L E + Sbjct: 181 MICFSYSGLTQELLLAVKQAKKNKTPIVAVTRKSESPLSKLADINLKLPDHESLMRVGAI 240 Query: 238 VSRLAQLTVIDVL 250 S AQ+ + +VL Sbjct: 241 NSTFAQMFISNVL 253 >UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus RepID=D0R5V5_LACJF Length = 272 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 128/255 (50%), Gaps = 8/255 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +++ + L+KSE K+A I ++ I+ +I ++ N + T+ R C+ + Sbjct: 1 MEFIQRYNQNKDKLTKSENKLANYIATHTEHVIYDTIKSLGTANNTGDATIVRLCKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ LAQ + +++ E + + K+ +++++ ++ S + + Sbjct: 61 SGFSDLKIALAQ---DSMMTTSKSHEEAQTSSELSSKVL---ISSIEKTEELINPSVLKQ 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV LL +A++I FGLG S A D + R + D +Q S D+VV Sbjct: 115 AVSLLAKARRIHIFGLGHSGESARDYERTWLRIGLIANAESDPHIQVQVATLLSKDDLVV 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVS 239 +S +G TK+ + ++A+E A +IA+T+ T P+A+ +++ V E +I + Sbjct: 175 GLSLSGHTKDTYDSLKVAKEYGAKIIAITNDLTSPIAQLGDVSLQTSVSEFMNI-GTVAG 233 Query: 240 RLAQLTVIDVLATGF 254 +++QL + DVLA + Sbjct: 234 QVSQLYLCDVLAREY 248 >UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XRD4_9DEIN Length = 264 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 4/246 (1%) Query: 20 KVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTP 79 ++A+ +L + D I+ ++ +A A SE +V RFCR + +GF DFKL LA L +P Sbjct: 7 RIAQYVLHNADQVIYQTVIEVADAAGSSEASVVRFCRDLGFQGFQDFKLALASDLVT-SP 65 Query: 80 YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSS 139 + + S +S ++ +A LD R ++ + V+ + +A++I F+G+G++ Sbjct: 66 VILPKQEKPTSAQSTADYVYNTARQVLDETRRLMNVDLLEEVVERILKARRIDFYGVGNA 125 Query: 140 AAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLAR 199 A D K R + D +S D+ IS +G + + V+ + A+ Sbjct: 126 GTTAQDFAQKLQRLGCAAIAYPDPHSAAVSAATLGPKDLAFGISVSGSSIDTVKALEQAK 185 Query: 200 ENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLR- 257 A +A+T A +P+ R A + PE M ++++QL ++D L T LR Sbjct: 186 LAGAYTVAVTRGARSPITRFADAVLLTSAPESPLTRGSMGAKISQLMLLDFLFTRTALRH 245 Query: 258 -RGAKF 262 +GA+ Sbjct: 246 PKGAEL 251 >UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus RepID=C2KAY2_9LACO Length = 281 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 128/248 (51%), Gaps = 6/248 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N+ KI +L+K+ + +A+V P ++ ++ + S +V RFCR++ Sbjct: 2 LNLANKISDVYPNLNKTSKLIADVYFKEPRIFLNKNLQELGTITQTSGASVVRFCRNLGF 61 Query: 61 RGFPDFKLHLAQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +GF DF++ AQ + N V+ +N +D S K+ S + + ++D +++ Sbjct: 62 KGFKDFQIACAQEMPNKQDAMVDTIINTNDEPTSVLYKLQLSLGKNIADIGKTIDHKSLD 121 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRF--NVPVVYSDDIVLQRMSCMNCSDGD 177 AVDL+ A++I G G+S A D K R NV V S I L++++ N + D Sbjct: 122 AAVDLMRSAQQIYVAGEGASGLAAQDLFYKLIRSGKNVNFVQSSHIALEQVA--NINKED 179 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 ++++ S++G T+ + +A+ A++N+A ++A+T +PL A ITL E Y Sbjct: 180 ILIVFSYSGLTQEPLLMAKQAQKNNAKIVAVTRIQDSPLKNMADTVITLPSNEKLLRYGA 239 Query: 237 MVSRLAQL 244 + S A++ Sbjct: 240 INSLFAEI 247 >UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C511 Length = 286 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 11/279 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN +I+ + + +E+ +AE IL ++ + S A+ + N S + RF + + Sbjct: 9 MNAYIRIKEYNDSYTATEKLIAEYIL--ENDILQDSAQALGEKTNTSAAAIIRFSKKIGF 66 Query: 61 RGFPDFKLHLAQSLANGTPY-VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +GF D K++LAQS V+ +D++ + K M T+ ++ + Sbjct: 67 KGFSDLKMNLAQSTKEEKQQEVDLIFEPEDNISTLVEKGCRLNMNTVLKTYQLINIDTLE 126 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 ++DLL A I FG+G S+ + D K R V+Y+ D+ +Q + D Sbjct: 127 ESIDLLNNASTIYLFGVGGSSVIGLDIYQKLMRIGKKVIYNADLHVQMTFAQSMDQNDAA 186 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 ++IS++G T LV++A++ E VI++T P+++ +T ++ + E + Sbjct: 187 LIISYSGSTTGLVDVARVLHEKQIPVISITQINANPISKLSTYSLKVPSEEKALRIGAVS 246 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR++ + D+L G F+ N + K+ L +S+ Sbjct: 247 SRISSFVITDLLYYGV-------FKKNFEEHKKNLIDSK 278 >UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales RepID=C6JFM8_9FIRM Length = 285 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 132/266 (49%), Gaps = 13/266 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L+ I Q L+KS +K+A+ + + + SI ++A VSE T+ RFCR + Sbjct: 4 SILDSITEQYHSLTKSGKKLADYVFSHTTETQYLSITSLAENCKVSEATITRFCRGLGLS 63 Query: 62 GFPDFKLHLAQS-----LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ FKL LAQ+ L + + V+ +DS+ + K+ + + +L+ D+ Sbjct: 64 GYNAFKLALAQADRTTDLGDSSNSA-EPVSSEDSISTICAKVHAANLLSLNESYALYDEE 122 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 +++A+ +L+ +++I FG G S +A +A +F + V+ D +Q + Sbjct: 123 EMSKAISILSSSRRIYCFGQGGSMIMAMEAWARFSTASPNFVHICDSHMQASAIAMADSK 182 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALT----SAGTPLAREATLAITLDVPEDTD 232 D ++ S++G T+++ + Q+A VI +T SAG A A++ + E Sbjct: 183 DAILFFSYSGSTRDMCDTLQIASSRHVPVILITHFPKSAG---AEFASVVLQCGYNESPL 239 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRR 258 + +++ QL +ID L G+ ++ Sbjct: 240 QSGSVAAKVGQLFLIDCLFYGYCSQK 265 >UniRef50_C7T7Y4 Transcriptional regulator n=8 Tax=Lactobacillus RepID=C7T7Y4_LACRG Length = 315 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 6/231 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L K+Q+QL LS R +A+ +L + I + A +A + VS +V RF R D Sbjct: 4 LLAKVQAQLPQLSPVNRALADYVLTDAEAFIAQTTAQIARASGVSAASVIRFVRLFDYPD 63 Query: 63 FPDFKLHLAQ-SLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FKL L + + A ++ V +DD + + K+ ++A+A + + LD++A+ A Sbjct: 64 LQSFKLALVRDTQAPALTPLDPLVQDDDDLPTMMRKLSQTAIAAVRDLPDELDQAAVQTA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDD--IVLQRMSCMNCSDGDVV 179 + L A+ I G+ +SA VA D K R ++ D L+R+ +D V Sbjct: 124 ITTLRHARHIYLVGMSASALVAQDLYLKLIRAGYLAIFDADAHTALERVYYTTAADA--V 181 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPE 229 V+ S++G TK +V AQ AR N VI +T A +PL A+ I L E Sbjct: 182 VVFSYSGLTKEVVLAAQQARRNQTPVIVVTRAEPSPLRDAASCVIALPPTE 232 >UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n=3 Tax=Listeria monocytogenes RepID=C8JWL0_LISMO Length = 273 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 6/209 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L I S LSKSE+KVA++IL++PD + SI +AL ANV E T+ RF R + Sbjct: 1 MDLLATISSYFPSLSKSEQKVAQLILSNPDEVENLSINDLALMANVGESTIVRFSRKIGL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ L + + + NE + ++ + L + +++ + + Sbjct: 61 TGFQDLKIALVKYQTSQKQNITDESNEAKDL------VYRQFVDGLQDTKSFIEQEKLEQ 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A ++ +A+ + +G+SA +A N+ R V + D LQ + D+V+ Sbjct: 115 AAKMIHRAEHVYILSVGTSAFIAMQLSNRLKRLGKFVEFVPDGHLQSIYVTMVKKTDIVI 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT 209 IS +G TK +++ +LA ++ A V+ L+ Sbjct: 175 GISKSGNTKEVIQNIELASQSGAPVVTLS 203 >UniRef50_B5RKH7 Transcriptional regulator, RpiR family n=2 Tax=Proteobacteria RepID=B5RKH7_KLEP3 Length = 294 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 131/265 (49%), Gaps = 16/265 (6%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 L I ++ L+ SE KV +++L P S+ A +A A VS PTV R R++ Sbjct: 18 QWLGSIHARSGDLAASEAKVVDLLLVDPLFVGTSTAAQVATRAGVSPPTVIRAARAIGFT 77 Query: 62 GFPDFKLHLAQSLANGTPYVNRNV-NEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF + K+ +A++ + V D ++ S + + L + +++ SA++ Sbjct: 78 GFTELKIEIARARGTAQFFAPPEVLTADATLASVLETSIRAGVDALTALSGAIEISALDE 137 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVDL+ A+++ FG G SA VA DA+ + V V D + ++ GDV++ Sbjct: 138 AVDLIRSARQVFAFGAGPSATVAADAVFRLRTAGVITVSIQDYLSAMIAARLLGPGDVII 197 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV- 238 ++S TGRT + + +A A A +IA+T+ TPLA A +++ + MP+ Sbjct: 198 VVSSTGRTSSTLSIADAASSAGASLIAITNQYDTPLATLANVSLVVG-------GMPLPA 250 Query: 239 ------SRLAQLTVIDVLATGFTLR 257 SRLAQL VID L TLR Sbjct: 251 QMAAAGSRLAQLVVIDTLVAALTLR 275 >UniRef50_Q184N2 Putative phosphosugar-binding transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q184N2_CLOD6 Length = 283 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 5/212 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + K++ E L++ ++K+A+ IL + + S++ +A + S ++ RF R M Sbjct: 1 MSCILKLKQIYEDLTEVDKKIADYILNNTEAISKLSVSELASNSKTSTASIVRFSRKMGY 60 Query: 61 RGFPDFKLHLAQSL---ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 GF D K+ +A+ L N YV+ N D +++S KI + T++ R +K Sbjct: 61 SGFGDLKIEIAKDLMGKENEYTYVDENY--DCNIDSVINKITNKNIETINQTRLLNEKDI 118 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 I AV+ + +AK + FG+G SA VA D K R N S D Q M N D Sbjct: 119 IKEAVEQIIKAKNVYIFGVGGSALVALDLQMKLLRINKQAFTSLDSHTQLMVSSNVDKED 178 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT 209 + + IS++G +K +++ + A+ VI +T Sbjct: 179 IAIAISYSGESKEVIKSIENAKLKGCKVICIT 210 >UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteriaceae RepID=A4WDW6_ENT38 Length = 274 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 128/252 (50%), Gaps = 9/252 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++ + S +++K+ +L P ++ +I +A E++ SE +V R CR++ + Sbjct: 6 NLLLRLRQGVSGYSPTQQKLGSFVLNDPSRVLYLTITELARESDTSEASVTRLCRTLGCK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FK+ LA + + + D+ VE ES +A D R LD+ + +A Sbjct: 66 GYTEFKMALALDVQREHVPLKKGDEIDEIVE-------ESILALQDTSRL-LDREILLKA 117 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L Q++ + +G+ +SA + K R P D+ M+ + D+VV Sbjct: 118 AQALHQSRSVYIYGVAASAIIGDYLHYKLLRLGKPAQLFSDMHRASMNATTLTSDDLVVA 177 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G T++L+ + +LAR+ A V+AL+ + +PL + + + PE + ++ Sbjct: 178 ISSSGSTRDLLHVVKLARKRGAHVLALSNTPRSPLTSLSDMLLVAAKPEGPLSAGALNAK 237 Query: 241 LAQLTVIDVLAT 252 + + ++++LAT Sbjct: 238 VGVMLLVELLAT 249 >UniRef50_Q041H9 Transcriptional regulator n=22 Tax=Lactobacillus RepID=Q041H9_LACGA Length = 279 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 139/269 (51%), Gaps = 4/269 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+++KI +Q+ +S S++KV IL +P I+ +I+ +A ANVS+ ++ RFCR++ Sbjct: 3 NIIDKIYAQMSSMSTSDQKVGRTILKNPAVVINITISQLAKRANVSDASITRFCRNLSLS 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ LAQ + + + +DD +++ G+I ++ + + + + + Sbjct: 63 GFHELKILLAQCIGQKESESLKKLPKDD-MQAALGEIEKNKVGEIHATLSQIPTEKLEKI 121 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS-DDIVLQRMSCMNCSDGDVVV 180 + ++ ++ I G + VA DA+ KF + + S ++ MN D ++ Sbjct: 122 LSIIEASRVIQISAEGDTYPVAADAVYKFNQIGLLSFASGGNVETADAQTMNLGRKDCLI 181 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVS 239 +IS++G + L++ +LA +N VI++T + +P+A + + V + S Sbjct: 182 VISNSGESAALLKEIKLAHKNKLKVISITNNPASPIALASDYHLKTGVRQTILQNQYYFS 241 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKR 268 R+A T+I+ L ++R K +N+K+ Sbjct: 242 RVAAFTIIEALFL-LLIKRNEKRIENIKQ 269 >UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillales RepID=Q02YU6_LACLS Length = 273 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 121/245 (49%), Gaps = 8/245 (3%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I+ + E L+KSE+K+A +LAS + ++ ++ + V + T+ RFC+ + GF D Sbjct: 7 IKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGYSGFSDL 66 Query: 67 KLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 K+ +A+ Y ++ N D + + + S + L + LD ++ L++ Sbjct: 67 KIEVAKE-----SYSQKSSNRTD-LTLFFDENENSIIEILHETKSKLDLEQFEKSSKLIS 120 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 +A I FG+G S A D F R VPV Q + D+++ IS +G Sbjct: 121 EASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISGSHFQLQTAALLKKTDLIIGISLSG 180 Query: 187 RTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQLT 245 +T L E ++A+E A +I +TS+ +PLA+ + + + V E+ + +++QL Sbjct: 181 KTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQ-TVNEEFFDGGSLTGKISQLY 239 Query: 246 VIDVL 250 + ++L Sbjct: 240 ICEIL 244 >UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKN4_PASMU Length = 286 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 13/263 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L K++ LS +E+++A+ IL P SS A+A + VS+ + +F + + Sbjct: 1 MGFLIKLKHTYPSLSPNEQRIADFILKHPHEVKSSSSKALANQIAVSQSAIIKFSQKLGA 60 Query: 61 RGFPDFKLHLAQSL----ANGTP--YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 F DFKL ++++L P +++ ++ + D + K+F L + SL Sbjct: 61 DKFSDFKLAISEALIRQETQSEPRVHLHDSITDKDDLSEIAEKLFVEKQQAL---KESLS 117 Query: 115 KSAI---NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCM 171 +AI R V+ L QAK+I G+G+SA VA D K + +PVV D Sbjct: 118 LNAIPYVARVVEQLMQAKRIQLMGIGNSALVAKDFFYKLTKIGLPVVTETDTHASLAMSQ 177 Query: 172 NCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPED 230 + + D++ LIS +GR + ++ A+ A+ +IALT+ T PL A + E Sbjct: 178 SLTPQDILFLISFSGRHREILLAAENAKARQIKIIALTALTTNPLHELADYLLYSVADES 237 Query: 231 TDIYMPMVSRLAQLTVIDVLATG 253 T + SR AQ + D+L G Sbjct: 238 TFRSSSIASRTAQHAITDLLFMG 260 >UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NYS8_9CLOT Length = 282 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 5/249 (2%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 ++I S + L +E+KVA+ +++ P AI S++ +A + S+ T+ RFC+ + +GF Sbjct: 9 DQIFSTYDSLYDAEKKVADYLISHPSEAIEMSVSELASHCDASQATIIRFCKKIGCKGFH 68 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 K+ LA V N + D ++ I S + + H+ + + VDL Sbjct: 69 QLKIKLAGEQRQQEEQVISNEIDIDQMDKSLNNIMISKVEEIKATFHNFNPEELREIVDL 128 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + A I F +G + +A D KF + + V S Q GDV IS Sbjct: 129 IIHANLIEFAAMGDTIPIALDGSYKFNQLGLKAVSSTIWESQEAFSRTLRKGDVFFAISA 188 Query: 185 TGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS--RL 241 +G +K LV++ ++ ++N IA+T+ + +PLA + E I+ VS R+ Sbjct: 189 SGASKRLVKMVEIVKDNGVTTIAITNQSKSPLAELCDHVLLTATRE--HIFHDQVSFTRM 246 Query: 242 AQLTVIDVL 250 A ++VID L Sbjct: 247 AAMSVIDTL 255 >UniRef50_C0DAS9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAS9_9CLOT Length = 290 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 136/275 (49%), Gaps = 8/275 (2%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I+ Q LSKS++++A IL + IH SI MA + TV RFC+++ +GF + Sbjct: 19 RIKMQYASLSKSQKRIANYILNHREAVIHHSITTMAQKTGTVPSTVTRFCQALSYKGFSE 78 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 K+++ ++LA+ ++ + + D+++ K+ S+ + +LD ++ AVD + Sbjct: 79 MKVYMEKNLASPLT-MDALIQKTDTLQVVLQKLMNSSQNAIQDTMRTLDARSLTEAVDAI 137 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A I FG A A R NV +D V ++ GDV + +++ Sbjct: 138 LAAGNILLFGQSGGYISATYARQLLLRINVLSQAVNDRVDANLAASTLKKGDVAIGFAYS 197 Query: 186 GRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAI--TLDVPEDTDIYMPMVSRLA 242 G ++++E A+ N A I +T+ + +A+ A L + + ++P+D Y+ + S + Sbjct: 198 GEARSVIEALTTAKHNKATTIVITANTNSTMAKLADLKLFYSYNIPDDLQ-YLHLAS-MC 255 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++ +I + LRR + + + K+A+ SR Sbjct: 256 EIMIIGAIQAEI-LRRPMQL-EKIDACKKAVLASR 288 >UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FU45_9FIRM Length = 277 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 13/222 (5%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +LE+I++ HLS E+ +A I+ + +I+ MA E VS T+ RFCR + Sbjct: 1 MGVLERIEANFVHLSPKEQLLATYIMQESPYFTNITISEMAKETGVSAATITRFCRKVGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNED--DSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F D K+ L S G N N D D+V + +I + + + Sbjct: 61 ESFVDLKIQLQAS--EGESASNHQ-NHDMFDTVSEFYNRI-------IQRTSELQSEYQL 110 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + + +L+QA +I +G+GSS A + + R +P D + +S DV Sbjct: 111 RQLIQVLSQANRIMVYGMGSSGLTARELAIRLSRMGLPATSETDSHMMIISSTVTRSSDV 170 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREA 219 V+ IS++G TK++++ A++N A+++A+TS G+ LA+ A Sbjct: 171 VIAISNSGETKDVIDALGNAKQNGAILVAITSMKGSSLAKLA 212 >UniRef50_C8STB5 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STB5_9RHIZ Length = 275 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 110/233 (47%), Gaps = 6/233 (2%) Query: 20 KVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTP 79 +VAE +LA PD + SI +A + SE +V RFCR GF DFKL LA+ LA Sbjct: 22 RVAETVLAQPDATLRQSITELAEASASSEASVMRFCRDQGFAGFQDFKLALAKELATDER 81 Query: 80 YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSS 139 + + DD ++ E+A+ +L + + I +A L A I FG+ +S Sbjct: 82 ARDIGLPTDD-----IQRLVETAIISLRETEQLIVREDIAKAARQLLAATAIDCFGIAAS 136 Query: 140 AAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLAR 199 A A K R D L M+ G V V+IS +G T + V +A+LAR Sbjct: 137 AITAQYLAYKMTRIGKLSRALGDAHLAVMAAGTTQKGTVQVVISSSGSTIDAVRIAELAR 196 Query: 200 ENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLA 251 A VI +++ + +PL LA+ PE S+++QL ++D LA Sbjct: 197 SQGAFVIGISNRSKSPLVAACDLALIASWPETPLTGGAFPSKISQLLIVDALA 249 >UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=Actinomycetales RepID=A8LV24_SALAI Length = 320 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 10/280 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L ++++ + L+ + R+VAE +L+ P+ A ++I +A + S T+ RFCR+M Sbjct: 32 GVLARVRAGADDLTGALRRVAEHVLSDPEAAARATIVELAERSGTSPATITRFCRAMGFE 91 Query: 62 GFPDFKLHLAQS-----LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ D +L +A LA T + R + D + +I + + LD + Sbjct: 92 GYADLRLGIAAETGRARLAGWTVDIGREIQPGDPLRRVLDQIIAADTRAMHDTAALLDLA 151 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + RA + A ++ FG SA V + R V D+ S G Sbjct: 152 EVERAAVAIAGASRVNIFGASGSALVGEEMQFMLHRIGVAAWAWSDVHEGLASAALLRVG 211 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLA-ITLDVPEDTDIYM 235 DV + +SH+G+T+ +E+ A A +A+T G P + A LA I L + Sbjct: 212 DVALGVSHSGQTRETIEMLAEAGSRGATTVAVT--GFPRSPLAELADIALLTASRATTFR 269 Query: 236 P--MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 P + +R QL V+D+L R + L+R +A+ Sbjct: 270 PDALSARHPQLVVLDLLYIAVAQRTHDRAHAALRRTAQAV 309 >UniRef50_A8F3C1 Transcriptional regulator, RpiR family n=7 Tax=Thermotogaceae RepID=A8F3C1_THELT Length = 275 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 13/243 (5%) Query: 11 LEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHL 70 + LS SE+KVA IL PD+ IH SI A +VSE T+ R + M +G+ FK+ L Sbjct: 10 FDRLSDSEKKVAMYILERPDDVIHYSITEFARVVDVSETTIYRVIKKMKFKGYQAFKIEL 69 Query: 71 AQ--SLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQA 128 + S P N ++++ Y E + + ++ +L K + +A D + Q+ Sbjct: 70 IRQTSGVKSVPLTNM-----ETLDEYV----EEIKSLAERMKTTLKKDDLQKAADWIVQS 120 Query: 129 KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRT 188 +K FFG+G S+ VA +D +Q + D+V+ +SH+G Sbjct: 121 QKTIFFGVGLSSVVAEYGSLLLSLLGFSSFCYNDPHVQVIVATGLCKKDLVISVSHSGNI 180 Query: 189 KNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVI 247 ++ V+ Q+AR+ A +A+T+ +PL+ +A+ V + Y + L ++ V+ Sbjct: 181 RDTVKSTQVARDVGARTVAVTAGINSPLSSVVDIALYSPVAR-FEKYEFLRGNLGEMAVL 239 Query: 248 DVL 250 ++L Sbjct: 240 EIL 242 >UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019054B9 Length = 259 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 13/260 (5%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 ++++ KVA +LA P ++ SI +A EA SE +V RFCR + +GF +FKL LA Sbjct: 1 MTRALEKVAAFVLADPQTVLYKSITELAEEAESSEASVIRFCRELGYQGFQNFKLALAHE 60 Query: 74 LAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIA 132 LA P + D V+ ++ E+A L+ LD+ AI R LL A+ I Sbjct: 61 LATLQQPTAS---APGDMVQ----ELVETARTALEETERLLDRDAIQRVSSLLLDARHIE 113 Query: 133 FFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLV 192 FG+ +SA A K R + D L M+ S D+ +LIS +G T + + Sbjct: 114 IFGVAASAITAQYLEYKLARLGIQAHIPRDSHLATMASATASADDLYILISSSGSTIDTL 173 Query: 193 ELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLA 251 +A+ A A VIA+T+ +PLA + PE S+++QL ++D LA Sbjct: 174 RVAESAHARGAKVIAITNRTKSPLAAICDFKLLASSPETPLTGGAFPSKISQLLIVDALA 233 Query: 252 TGFTLRRGAKFRDNLKRVKE 271 T A+ LK +KE Sbjct: 234 NTITKLDPAR----LKTIKE 249 >UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF8_9LACT Length = 283 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 133/278 (47%), Gaps = 3/278 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +I+S L+ L SERK+ E IL P+ I + + + + A + V R C + Sbjct: 5 NILGRIKSVLDDLPNSERKIGEYILTYPEETIKMTTSQLGIAAESNSTAVIRLCNRIGVN 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K++L+ + + + ++++ + K+ +A +++ +++ I R Sbjct: 65 GFTKLKVNLSAEIVSVDESGYAEIEAEETIGTIKNKLLTNAFKSMEETISLMNEFDIERV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++L+ A + +G+G+S +A + + K+ R V+ D Q +S + + + + Sbjct: 125 IELIESASMVYVYGVGNSRIIAENMVQKWSRVGKIVICPTD-NHQLVSMLGAAPKNALFF 183 Query: 182 -ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G T+ ++EL +LA++ + LT G L +A I ++D S Sbjct: 184 GISNSGETREIIELIKLAKKCSLKTVGLTQFGQNSLTNKADYTIQTVKTIESDSQFISSS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 AQL IDVL F + + +K+ +E + + + Sbjct: 244 LHAQLIAIDVLFYSFLSKNYVAGTERIKQSREEMNQYK 281 >UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG49_SEBTE Length = 283 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 146/294 (49%), Gaps = 20/294 (6%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ K++ + ++ + +E A+ I++ D I S +A + S T+ R C+ + Sbjct: 1 MSLIIKLR-EAKNFTPNEIGAAKYIISHSDEVIRLSCTELAKKTYTSPATIIRLCKKIGI 59 Query: 61 RGFPDFKLHLAQSL---ANGTPYVNRN--VNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ +FK+ LA + + +N+N +++ DS+ KI ++ +L + DK Sbjct: 60 GGYQEFKVILATEINFFIKNSMEINKNNEIDKKDSISDIIDKISSLSIDSLKETKILTDK 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFN-VPVVYS--DDIVLQRMSCMN 172 + + +D++ A+ + +G G+S VA DA KF R V Y+ D Q + N Sbjct: 120 NVVKSVIDMINNAEILDLYGSGASHFVALDANYKFMRIGKVTATYALYDQ---QYVQAKN 176 Query: 173 CSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDT 231 ++ ++ S++G T ++E+A++ EN A +I +T ++ L + A ++ + E+ Sbjct: 177 SNENHAAIIFSYSGETAEMIEIAKILTENKAKIITITKNSDNTLEKFADKSLYVTAKENL 236 Query: 232 DIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNL 285 + SR++ L VID+L T + F ++ EAL ++R K + L Sbjct: 237 YRSAAIYSRISMLNVIDILYTAY-------FNLIYEKALEALGKTRISKTEVKL 283 >UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n=3 Tax=Vibrionales RepID=A5L3V2_9GAMM Length = 282 Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 4/213 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + K+++ L LS S+ VA +L P S +A VS+ T+ +F + + Sbjct: 1 MKGIAKVKALLPKLSPSDSLVARYVLDHPQQVKQLSSPELAKAVGVSQSTIVKFSQKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVN----EDDSVESYTGKIFESAMATLDHVRHSLDKS 116 +GF + K+ L QS + P R ++ DS ++ K+ S +L+ + Sbjct: 61 KGFSEMKVKLYQSDMSYQPVSQRGIHGTITRKDSPDTVMEKLLASKTQSLERTVLLNEGE 120 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 ++ A DLL A KI G+G+S+ VA D K + V D +Q + + ++ Sbjct: 121 QLSNAADLLHLANKIQISGVGASSLVAKDFAYKLMKIGHAVHAEPDAHIQIANAASLTEN 180 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALT 209 DV+V IS++G+T+ +V++AQLAR A VI ++ Sbjct: 181 DVLVAISYSGKTREVVKVAQLARSKKAKVIVIS 213 >UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus RepID=Q040R4_LACGA Length = 283 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 14/237 (5%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ K+ + + + +K+A+ +LA P + + S ++ RFC+ + Sbjct: 1 MDLSTKVLNNYPNFKGASKKIADYLLAHPKTFLQEDAQGLGKMTKTSAASMIRFCQQLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN-----VNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +G DF++ LAQ TP N V+ D+ K+ S + H +D Sbjct: 61 KGLKDFQIQLAQD----TPQDNEETIDPIVDHHDNPHIVLQKLLSSIEKNTEQTAHLIDG 116 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDD--IVLQRMSCMNC 173 A+N+A++ L A +I G+G+S+ A D KF R + VV++ D I L+R+ C + Sbjct: 117 LALNQAINFLKNADRIYLAGVGASSLPAQDLYYKFIRSDKNVVFNQDIHIALERI-CYSH 175 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPE 229 S D +V+ S++G T+ ++ +A AR+N +I +T S +PL A + + + E Sbjct: 176 S-TDALVIFSYSGLTQEILLMADQARKNHTPIIVVTRSRQSPLVELADVVLGVSTDE 231 >UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH25_PETMO Length = 283 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 12/258 (4%) Query: 4 LEKIQ----SQLEHLSKSERKVAEVILASPDNAI-HSSIAAMALEANVSEPTVNRFCRSM 58 + KIQ S++ +KSE+KVAE IL S I +I +A + SE T+ RF + Sbjct: 1 MSKIQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKA 60 Query: 59 DTRGFPDFKLHLAQSLANGTPYVNR----NVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 F DFKL LA L N + ++DS + K+ ++ +++ LD Sbjct: 61 GFETFQDFKLTLA--LDNNEDIFEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILD 118 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + +A + + AK+I +G+GSS+AVA K R P +D +Q +S + Sbjct: 119 INNFLQAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLN 178 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 GD+ + IS +G TK+ V+ +A+++ A I+LT A +P+ + + + + + E+ Sbjct: 179 FGDLAIGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVK 238 Query: 234 YMPMVSRLAQLTVIDVLA 251 S L Q+ +++L+ Sbjct: 239 TSAGRSILVQIFAVEILS 256 >UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8A7_MACCJ Length = 285 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 6/278 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I + + E+++A+V++ P+ ++ I +A +N SE + RF + + Sbjct: 3 SVLGQITKMYDSFTPVEKRIADVVIEYPEKVVNLPIKEIAHLSNTSEAAIVRFSKRLGLS 62 Query: 62 GFPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G K+ LA+ L V + D E K+F + + L + + I+ Sbjct: 63 GIKVVKVELARELHTIADKKVPTKIELTDDEEVMKEKVFNNTIQALYNTEKVISAKVIDE 122 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A +T AK++ FG+G+S VA D K + + + D++ + GDV+ Sbjct: 123 AAQAITSAKRVMIFGVGNSRVVATDLHVKLMNIDQSAILATDLLSAITLLGHYEAGDVLF 182 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 + S T + K + ++ + A+E +I LT +P R A + + + E+ M Sbjct: 183 VTSETSKNKVITDICKYAKEKGIKIILLTQKFSSPAIRMADIVLAMAKEENEINLGYMTV 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R AQLT++DVL LR A +D + + L E+R Sbjct: 243 RTAQLTIVDVLY----LRVCAYLKDTVLSNMQNLNETR 276 >UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XVK6_9LACO Length = 280 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 128/276 (46%), Gaps = 21/276 (7%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 +E++Q+ +L + E+KVA V L P+ +I +A +A V TV+RF + + + F Sbjct: 1 MEQVQNLFINLPRQEKKVARVTLQKPELVRRMNITELANQAGVGVATVSRFTKRVGCKNF 60 Query: 64 PDFKLHLAQSLANGTPYV-----NRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 DFKL L TP +NV+ + + +Y KI MA + + Sbjct: 61 ADFKLALV------TPDTMQRESEQNVSTPNDIHNYYQKILAETMAMVS-------TKQL 107 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +A +L+ AK++ FG+GSS A + + R P + + ++ D D+ Sbjct: 108 RQAANLIHGAKRVYVFGIGSSGYNAQEFAQRLMRMGKPAFAMTESNMMTIASATMQDNDI 167 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 V+ +S +G T + + +R+N A +IA+T+ + L + + L + E Y + Sbjct: 168 VIALSVSGSTPEVCSAVRDSRKNGATIIAVTAFKNSLLGKMSDLLFQIKSTELVGDYDFI 227 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 S+ A VID+L L + FR + + EA+ Sbjct: 228 NSQFAVTYVIDMLTQ--MLLQFTDFRATMNKTVEAI 261 >UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Q9_9CLOT Length = 287 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 135/279 (48%), Gaps = 6/279 (2%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANV-SEPTVNRFCRSMDTRG 62 L KI L+K ++++A+ IL +P ++ SI + ++ SE +V +F R + G Sbjct: 11 LAKISELYPQLTKGQKQLADYILKNPSEVVNKSITDLISHTSLKSEASVVKFYRLLGFDG 70 Query: 63 FPDFKLHLAQSLANGTPYVNR-NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F FK+ LAQ L N T Y + ++ DD K+F AM++L + A Sbjct: 71 FKSFKIKLAQELVNRTFYHSESDITIDDEPTEIKKKVFLGAMSSLSK-NADIAAGECMDA 129 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 LL+ AK+I G G+SA++ A + + V + D + + GDV++ Sbjct: 130 QKLLSSAKRIIILGHGASASICQYAFFRLTELGLNCVCNQDAHMNAAILTHPRPGDVILC 189 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM-PMVS 239 +S +G T +L + ++A + I +T A G+ +AR + + ++ V E+ +I + S Sbjct: 190 VSQSGETADLYKQIEMAYQRRIPAILITGAPGSSIARLSQVILS-TVSEERNILTDALNS 248 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R++Q +ID L + ++ + L+ + K+ + Sbjct: 249 RVSQFCLIDALFSMISIANANEMLPRLQDTRNTFKKYKL 287 >UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enterobacteriaceae RepID=A1JQZ2_YERE8 Length = 286 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/266 (23%), Positives = 134/266 (50%), Gaps = 8/266 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L +I L L+++++K+A+ IL +P++ + S + A +A VS+ + +F + + Sbjct: 1 MSILNEITWLLPELAENQKKIAKCILDNPESILSISSSQFAEDAGVSQSAIVKFSQKIGM 60 Query: 61 RGFPDFKLHLAQSLANGTPY-------VNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GFP K+ +++ L+ + ++ +++ +DS+ K+ A++ + Sbjct: 61 KGFPALKIAISEELSRNNLFKSYPHKALHNSISPEDSLMVMAQKLAHEKTASIMETTRKI 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 + S + V L+ A+++ G+ + A D K + + + D+ +Q + + Sbjct: 121 NFSVFQQVVSLINAAQRVQIVGIWGAGLTAKDLSYKLQKIGIMTLVEADLHVQIAAALTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTD 232 + DV +++S TGR K++ A +A+ A VIA+T S +PLA+ A + E+ Sbjct: 181 TPKDVQIVLSFTGRRKDMKIAATVAKAQGATVIAITGSKVSPLAKIADYVLESISDENEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRR 258 + SR AQ T+ D++ +R Sbjct: 241 RSSSISSRTAQNTLTDLIFLALMQQR 266 >UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UGP6_SINMW Length = 284 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 5/253 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +++S L LS +ER+VA +L + D +I S++A+A +VS+ TV R CR+ GF D Sbjct: 15 RLRSVLPKLSDAERRVALWMLKNVDLSIRQSMSAIAQATDVSDTTVLRMCRTAGFEGFTD 74 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 KL LAQ + + + S G++F + L+ LD++ +A+DL+ Sbjct: 75 LKLALAQEPREAIEH--SSGEPEASALQAAGRLFRAITQALNDTFGVLDEATFAKALDLV 132 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 AK I G+G S VA + R + D LQ M GD+VV IS++ Sbjct: 133 ANAKHIMVGGVGGSGIVAQAFYQRCIRLGLRCDAPIDSQLQIMHAALTGPGDLVVAISYS 192 Query: 186 GRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T + V + Q A+ A + +T + + LAR A + + E PM +++AQ+ Sbjct: 193 GITSDPVLVLQEAKARGASTLCITGNSSSALARLADVVLVSVSHEQGS--EPMAAQIAQM 250 Query: 245 TVIDVLATGFTLR 257 T++D L R Sbjct: 251 TLVDALYAALVAR 263 >UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK55_BACSK Length = 268 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 21/252 (8%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++IQ LS +E+++A+ ++++P+ + I +A + +VS T+ RFCR + Sbjct: 4 MLQQIQVNYHALSAAEKRIADYVMSAPEELANIHIKDLAAKCSVSVATITRFCRKVGAAN 63 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F +FK+ + S+ R E + + I++ A + R +++ I +A Sbjct: 64 FVEFKMSVRDSI--------RTEEEGGELIAEMESIYK---AIIGGSRELINQDDIVQAA 112 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A +I +G+GSS + + R + V D M+ + DVV+ I Sbjct: 113 TLLENANRIEIYGIGSSGLSGQEMKFRLMRMGMRVDCHIDSHTMVMNASLLTAADVVLAI 172 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S++G T ++ E LA+EN A VI LT+ TPL+ A L + P+ P +R Sbjct: 173 SNSGHTVDIQEAVALAKENGATVILLTNHEHTPLSEMADLLLLSFSPK------PFYARG 226 Query: 242 ---AQLTVIDVL 250 AQL+++ VL Sbjct: 227 FLNAQLSIVHVL 238 >UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C5BVH6_BEUC1 Length = 299 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 16/286 (5%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++ L L SER++AE IL P +I +A S+ +V RFCR++ G Sbjct: 16 VLTRLPGLLPTLRSSERRIAEAILDDPQAVSRDTIEQLAARCGTSKTSVTRFCRTIGLAG 75 Query: 63 FPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 + + +L LA + + + + + + + ++ + + L +LD++A Sbjct: 76 YTELRLALAGDVGRRRDESWRAELGSSADPQNPADVVVDELLTANVRALTETVRTLDRAA 135 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFN-VPVVYSDDI-VLQRMSCMNCSD 175 + +VD L A +I +G+G S VA D +F R V +S+ L + + S Sbjct: 136 LAASVDALASAGRIDLYGIGGSGTVAADLQRRFHRIGRVAHAWSESHDALTGAAMLGAS- 194 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 DV + +SHTG T + LAR+ A IA+T+ G+ +A A L + E+ Sbjct: 195 -DVAIALSHTGETSEVAAALALARDRGATTIAVTNYPGSAVAAAADLVLVTAAHEERARA 253 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGA---KFRDNLKRVKEALKESR 277 + R AQ+ V+D L + L G + + L+R EA++ +R Sbjct: 254 DGLAGRHAQMFVVDCL---YVLVAGVLHDESQSGLRRTSEAVRSTR 296 >UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n=4 Tax=Enterobacteriaceae RepID=C2LK66_PROMI Length = 283 Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 11/259 (4%) Query: 17 SERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKL-HLAQ--S 73 +E+++A +L + DN + A +A +A VS +V RF R M G+P+FK+ +L++ Sbjct: 18 TEQRLAHYLLENSDNIASMNAAELAQKAGVSSASVIRFSRQMGYGGYPEFKIDYLSEEKQ 77 Query: 74 LANGTPYVNRNVNEDDSVE---SYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKK 130 + + + N+ + DS E + TG +F +A+ D + LD + I+ + + AK+ Sbjct: 78 QKSSSDILYANLAKTDSTEQIIAKTGHLFTTAIQ--DSIAL-LDAATIDLLAEKMISAKR 134 Query: 131 IAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKN 190 I FG+G+SA VA D +K R N ++S D+ Q N S D+ + ++ G T + Sbjct: 135 IVLFGVGASAIVASDIFHKLIRVNKNTLFSADLHAQLAYSANLSADDLAIAVTARGNTAD 194 Query: 191 LVELAQLARENDAMVIALTSAGTPLA-REATLAITLDVPEDTDIYMPMVSRLAQLTVIDV 249 + + + A++ + +ALT G A R A + E + ++ Q+ DV Sbjct: 195 INRMLKAAKQEGCITVALTRFGQDEATRLANYTLPYFYDEQHSQLGVITPQVLQMVAFDV 254 Query: 250 LATGF-TLRRGAKFRDNLK 267 L + TL +G+ + LK Sbjct: 255 LFFKYMTLAKGSAEKALLK 273 >UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=1 Tax=Vibrio cholerae CT 5369-93 RepID=D0I0X8_VIBCH Length = 282 Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 128/253 (50%), Gaps = 7/253 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N+L +++ +E S + VA+ I+++ D+A + +I +A + SE TV R CR + Sbjct: 7 VNLLSRLRYGMEGYSPKLKTVADFIVSNADSAQYLTITELARDTMTSEATVIRLCRDLGF 66 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDS--VESYTGKIFESAMATLDHVRHSLDKSAI 118 +G+ DF++ LA ++ N +V ++D ++ T +SA+ +L +D+ I Sbjct: 67 KGYSDFRMALAIEISQPQFTKNNDVAKEDGDRIDDAT----QSAITSLQDTSILIDRKQI 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 NR ++ QA I G+G+S+ V + R +D + M + + D+ Sbjct: 123 NRICQMIHQADNIHCVGVGASSIVGRYLSFRLTRIGKSSTMFEDTHIAAMRAVKSTPSDL 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 IS +G TK++V +A A++ + V++LT+ +PL+ + + PE Sbjct: 183 WFAISSSGSTKDVVYVATRAKKQQSPVVSLTNIRHSPLSVTSDEVMVAARPEGPLTGGAF 242 Query: 238 VSRLAQLTVIDVL 250 S+++ L ++D+L Sbjct: 243 ASKVSALLLVDIL 255 >UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAC9_9ACTN Length = 270 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 13/275 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAA-MALEANVSEPTVNRFCRSMD 59 M+++ KI+S L +K+E +A IL ++ + + ++ E V E T+ RFCR + Sbjct: 1 MSIIGKIESCLPSFTKTETIIARFILDHREDGVEQYLLGDLSRELGVGEATIVRFCRKLG 60 Query: 60 TRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF + K L S+ N E + +G+I + ++++ + I+ Sbjct: 61 LGGFTELKFLL--SVEN---------EEHTAARENSGEIKDILISSIKMTDSMVSSKDIS 109 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 VDL A ++ FFG+G S A ++ FRF + Q M C + ++ Sbjct: 110 DVVDLAGAASEVFFFGIGMSGLSASMGESRLFRFGKRTKAITEAHAQNMQASLCDENSLI 169 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 V +S +G T +L+E LA+E+ A V+A+TS E + L + I S Sbjct: 170 VAVSISGETIDLIEAVSLAKESGAKVVAITSYLRSTLAELADYVLLSFGKPNYINAGAFS 229 Query: 240 R-LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 ++QL ++D++ + + LR A+ + KR+ ++ Sbjct: 230 TVVSQLYILDLITSEYALRFSAEAARSKKRIARSI 264 >UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NHI8_9LACT Length = 281 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 144/289 (49%), Gaps = 24/289 (8%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L KI+S + ++++R +AE + + + S+ + S RF + M Sbjct: 1 MSVLYKIKSSMSAFTETDRSIAEFVFVNRQVVLESNAKELGDMTKTSAAAWVRFSKKMGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESY-------TGKIFESAMATLDHVRHS- 112 +G P FK+ LA+ + T NEDD +E++ G + ++ ++R + Sbjct: 61 KGLPAFKVALAKETQSYT-------NEDD-IETFLNPQDSLMGLLQKTENMLTQNIRETF 112 Query: 113 --LDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDI--VLQRM 168 LD A+ +A++ + +AK + G+G S+ V D +K R + V+Y D+ ++ R+ Sbjct: 113 SLLDYHALEKAIEFIHEAKTVFLLGVGGSSIVCLDFYHKMTRIHQNVMYDRDLHTLMPRI 172 Query: 169 SCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVP 228 + ++ DVV++IS+ G T+++ +A++A+ A ++ +T I L VP Sbjct: 173 AQLD--KNDVVLVISYNGETESVNSIAKVAKTMGARIVGVTKYNLKSTLSTLSDIRLFVP 230 Query: 229 -EDTDIYM-PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 E+ +I + + SR + LT+ D+L G +D L R ++ +KE Sbjct: 231 VEEKEIRLGSITSRNSLLTITDLLYYGIAKTDFNVTKDLLVRTRQFIKE 279 >UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI5_9CLOT Length = 294 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 132/276 (47%), Gaps = 5/276 (1%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I+S+++ + +++ VA IL + + I +A+E+ VSE TV+RF ++M + F Sbjct: 18 IRSKMQDFNPAQKAVANYILNNFYDMEGMPIRDLAVESEVSEATVSRFVKAMGYENYRAF 77 Query: 67 KLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 +L + +S A G+ V E+D+ KIFES + L +D A+ RA D Sbjct: 78 QLEVTKSKAERRKGSLKGYAEVTEEDNAPGICRKIFESNIQALQDTLTVIDYDALERAAD 137 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L+ +A+++ F G S A+ + R + D Q ++ DV V IS Sbjct: 138 LIARARRLCIFAQGRSKVTANSIRLRLHRLGIEGTLYTDPHEQAIASSLMGPEDVAVGIS 197 Query: 184 HTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI-YMPMVSRL 241 GR+++++ + A + +I +TS TPL +EA + + ++ D P + + Sbjct: 198 TFGRSRSILVSIRRAAARGSSIIGVTSYQNTPLEKEADILLRTVNNDEADFGSEPSCASV 257 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 Q+ ++D L R K + K ++A+++ + Sbjct: 258 TQMVMLDCLYMLVAKRMEGKAEERFKITRDAIQQEK 293 >UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBM1_9CLOT Length = 266 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L ++Q + S E+ +A+ I+ D + +I +A E S T+ RF + + Sbjct: 1 MDILCEVQRKYNEFSDKEKDIADYIMQHGDKIKNINITDLAKEIGTSGATITRFAKKIGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ L G+ V +N++D + SYT + + ++ + +DK I + Sbjct: 61 DSFVDMKIKL------GSNKVELPINDEDGIFSYTYQYYNEV---IERTKMLIDKEEIFK 111 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFR--FNVPVVYSDDIVLQRMSCMNCSDGDV 178 V+ + +AK I +G+GSS + M + R FNV + +++ S + S+ D+ Sbjct: 112 VVNEIKKAKNIYIYGVGSSGLTCKEMMQRLLRMGFNVHCISDSHMMIINSSIV--SENDL 169 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 V+ IS +G T+ ++ + ++EN A ++++T G+ +++ + + + P D + Sbjct: 170 VIGISISGETQEVIHSLRKSKENGAKIVSITGFEGSTVSKYSDIKFIVYNPNFVDRSRFI 229 Query: 238 VSRLAQLTVIDVLA 251 ++ + + ++D+++ Sbjct: 230 NTQFSAMYLLDLIS 243 >UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax=Gammaproteobacteria RepID=RPIR_ECOL6 Length = 296 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 116/240 (48%), Gaps = 1/240 (0%) Query: 12 EHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLA 71 E ++++E ++ E +L + + +I +A VSE + + + + GF + + L Sbjct: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 Query: 72 QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKI 131 + + + D++ + K+F + T+ + ++ I+RA QA++ Sbjct: 85 DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 Query: 132 AFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNL 191 +G G S A+ D +KF R V D + MS +GDVV++++H+GRT ++ Sbjct: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 Query: 192 VELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVL 250 +LA++N A +I +T S +P+A+ A I PE + +R+ QLT++D Sbjct: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 >UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUN7_9ACTO Length = 294 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 120/264 (45%), Gaps = 7/264 (2%) Query: 1 MNMLE-KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMD 59 M +E +I+ + L+ +E++VAE +LA P +I +A + S TV RFCR++ Sbjct: 1 MGEIETRIRGLVPTLTPAEQRVAEQVLADPLGTHRGTIGQLAERSRTSLTTVTRFCRALG 60 Query: 60 TRGFPDFKLHLAQ-----SLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 G+ + + LA S + T ++ DD ++S + + + L LD Sbjct: 61 MAGYQELRFALATEAGEASSRDWTLGAAADIGPDDPMQSVLANLVATDVRALQETASQLD 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + + VD +T A+++ + + SAAV +D + + + D+ S Sbjct: 121 LAVAEQLVDAITTARRVDLYAVSGSAAVTNDLQRRLHQLGITCHLWIDVHDALASATLLG 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 DV + ISH+G T ++E AR+ A+ A+T+ + + A L +T E T Sbjct: 181 PEDVAIGISHSGETIEVIEPLTAARDAGAVTAAVTNFPRSAITSVAGLLLTTSAREATYR 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLR 257 + R QL VID L TG R Sbjct: 241 SGSLSGRHTQLLVIDCLVTGVAQR 264 >UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=Shigella flexneri 2002017 RepID=D2AGN5_SHIF2 Length = 333 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 12/264 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L KI++ + +E+K+A+ + A S MA + +S+ ++ +F + + Sbjct: 68 MLYLTKIRNAESEFTGNEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLGA 127 Query: 61 RGFPDFKLHL------AQSLANGTP-YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GF + ++ L ++ N T +++ ++ DDS+E K+ L+ Sbjct: 128 QGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALF 187 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + + ++++++A I GLG SA V D K + V D +Q Sbjct: 188 DYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQAL 247 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLD-VPEDT 231 GDV + IS++G K +V A+ AR+ A VIA+TS A +PL R A TLD V +T Sbjct: 248 KKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHF--TLDTVSGET 305 Query: 232 DI-YMPMVSRLAQLTVIDVLATGF 254 + M +R AQ +V D+L G Sbjct: 306 EWRSSSMSTRTAQNSVTDLLFVGL 329 >UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D858_9CLOT Length = 275 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 26/219 (11%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++ + L ER+ AE +L S IA +A EA VSE TV R C M G + Sbjct: 12 KLRGVIGSLGAQERRFAEYLLNSFAGIEKEPIAVLAKEAQVSEATVVRVCHKMGYSGLKE 71 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTG------------KIFESAMATLDHVRHSL 113 K+ +A+ E+++ S+ G ++F A+ L + + Sbjct: 72 LKIVVAR--------------ENETAGSFDGGIGGQYMDELKERVFMGAIRALQDTMNLI 117 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D+ + +A +L A I+ +G+G S VA ++ + +P ++ ++ Sbjct: 118 DEDEVEKATKVLCNANYISIYGVGGSVPVARSLKHQLMKLGIPSNVYNEFQPTIIAAEKY 177 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG 212 + GDV + ISH+G + +VE ++AR A I +TS G Sbjct: 178 NKGDVAIGISHSGESSQVVEALRIARGKGATTICITSYG 216 >UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=Clostridiales RepID=A3DDB2_CLOTH Length = 299 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 20/291 (6%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L++IQ+ + SK ++ +A I+ D A + + A + E VSE TV RF + Sbjct: 8 DLLKRIQAGMPGFSKGQKLIANFIINHYDKAAYMTAAKLGEEVGVSESTVVRFANEIGFD 67 Query: 62 GFPDFKLHLAQSLANGTPYVNR------NVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+P + L + + V R +NE + ++S E ATL+ + D+ Sbjct: 68 GYPKLQKVLREMNKSKLTAVQRIEVTSSRINEGNILKSVLQSDMEKIKATLEEI----DQ 123 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRF---NVPVVYSDDIVLQRMSCMN 172 + N V + A+KI G+ SSA +A + +F NV +V++ + ++ Sbjct: 124 ESFNNIVKSILNARKIYILGVRSSAPLA-SFLGFYFNLIFDNVRLVHTTSVSEMFEQIIH 182 Query: 173 CSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDT 231 S GDVV+ IS +K + + A+ A V+A+T S +PLA+ A IT + Sbjct: 183 ASRGDVVIGISFPRYSKRTINAMRFAQNQGATVVAITDSLYSPLAKNADHVIT----ARS 238 Query: 232 DIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR-FDKQ 281 D+ + S +A L+VI+ L + R ++ +R+++ E + ++KQ Sbjct: 239 DMASFVDSLVAPLSVINALIVAIGMSRKPHVQETFERLEKIWDEYKVYEKQ 289 >UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1QW74_CLOBU Length = 281 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 9/279 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN I+ + +++SE+K+A+ +L + S + +A S +V RF R + Sbjct: 1 MNCSLLIKQIYDKMTESEKKIADYVLVNSSEVYKFSASELANITKTSSSSVVRFSRKLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN-VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF +FK+ LA+ N + + ++ +D++ K + +++ LD+ I Sbjct: 61 EGFQEFKIELAKDDINPVENIEYDYIDTEDNIREVIVKTANKNIQSINDTISLLDEHTIE 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A+ + AK I FG+G SA + D K R + + S + +Q N S+ D+ Sbjct: 121 EAIKAIKNAKNIYIFGIGESALIGLDLQYKLLRIHKNAMISLESHVQLSMSANISNDDIA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + IS+ G+TK + +E A I +T G P++ + I + E + Sbjct: 181 IGISYLGKTKEVYSALSKCKEKGAKCITITKFGENPVSSLGDIKIQVPFVEKDLRIGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR+ QLTVID+L G ++N V++ LKE+R Sbjct: 241 SRIVQLTVIDILFVGLA-------KENFSDVEKYLKETR 272 >UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1Y9_BEUC1 Length = 307 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 122/257 (47%), Gaps = 10/257 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L +++ L L S R+ AE +LA P ++ +I +A + S V+R CR + Sbjct: 16 GILAELRRLLPDLPDSVRRTAERVLADPVASVAGTITDLAEASGTSPSAVSRLCRRLGVD 75 Query: 62 GFPDFKLH-LAQSLANG-TPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+P ++ +A + A+ +P+ ++R + DS+E G + + + LD Sbjct: 76 GYPALRIAVVADATASASSPWEIDISRTIGPTDSLEDVAGTLGAATSRAVHDTLAGLDLD 135 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + + A+++ +G+ SA + + + R + D+ G Sbjct: 136 VLRDVAHAVAGARRVHLYGVSGSAVMTAELQLRLHRIGIATWSFADVHEGLTGAALLGPG 195 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLA--ITLDVPEDTDIY 234 DV + +S+TG T +E+ + A DA+ +A+T G P + A +A I + V E+T Sbjct: 196 DVAIAVSYTGETIETLEMLRAAGSRDALTVAVT--GAPRSSLAAVADRILVTVTEETTFR 253 Query: 235 -MPMVSRLAQLTVIDVL 250 P+ +R ++LTV+++L Sbjct: 254 EGPLAARFSELTVVELL 270 >UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=Pediococcus RepID=Q03HR4_PEDPA Length = 270 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 9/253 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+++ ++ + LS+ ERK+A ++ P + +I ++ +A VS TV RF + M Sbjct: 1 MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F FKL LA++ +N T V+ N D V F + M T R +++ +N+ Sbjct: 61 PDFSQFKLGLAEATSNITENVD-NAPLPDQVTD-----FYNQMITGTWKR--INQKTLNQ 112 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 L+ A ++ FGLGSS A + + R + D +S D+++ Sbjct: 113 VAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYISSSIMQKDDLLI 172 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 ++S +G++ + E +A+++ V+++T+ +PLA + +++ E D + S Sbjct: 173 VLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINS 232 Query: 240 RLAQLTVIDVLAT 252 +L + +ID+L+T Sbjct: 233 QLGVVYIIDILST 245 >UniRef50_UPI0001BC57B3 oxygen-independent coproporphyrinogen III oxidase n=2 Tax=Fusobacterium RepID=UPI0001BC57B3 Length = 538 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 6/204 (2%) Query: 53 RFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMAT-----LD 107 RF + + +GFPDFKL L+Q + N + N+ ++ + T +I +AT ++ Sbjct: 307 RFSKKLGFKGFPDFKLSLSQDIGNRKAESHVNIMHEEIKPTDTFEIIGKKVATENTMAVN 366 Query: 108 HVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQR 167 + D + +AV ++++A+KI G+G S VA D K ++ +D +Q Sbjct: 367 NTYEITDFKELEKAVKMISEARKIMLAGVGFSGIVAKDFHFKLLELGKQTLFENDTHMQL 426 Query: 168 MSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDV 227 ++ DV+ +ISH+G+T + LA+ A+ +I LTS RE V Sbjct: 427 SYLATMNENDVLFVISHSGKTLEVFNLAKAAKNRKVKIITLTSVVQSPIRELGDIKLSTV 486 Query: 228 PEDTDIYMPMVS-RLAQLTVIDVL 250 +D +S R++QLTVID++ Sbjct: 487 EMKSDFRATALSPRISQLTVIDMI 510 >UniRef50_C0C1I3 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1I3_9CLOT Length = 288 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 9/280 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASP-DNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 +I + + L +ERK A+ +L P + A+HS I A A SE T R + + G+ Sbjct: 11 EITAIYDTLRGAERKAADYVLLHPQEAALHSIITESAGRAGCSEATFVRLAQKLGYNGYA 70 Query: 65 DFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 K L + A PY + ED ++ +F +A LD LD+ Sbjct: 71 QLKQMLLPAEAAFEPETLLPYGDIGRGEDS--QAVLCSVFHAAARALDDTLDLLDRKVYE 128 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 ++ +T+A KI G G + A+ A KF R + V D +Q M GDV+ Sbjct: 129 ESLSYITRAGKILSAGAGDAYTAAYSAYLKFSRIGLRAVCPADFDVQIMEASGMKRGDVL 188 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 +LISH+G T+ L ++A+ A+ A +I +T+ +PLA+ + I + Sbjct: 189 LLISHSGSTRTLCQVAETAKAKKARIITVTNYPLSPLAKLSDCVIRTAAFTKNPCNETVA 248 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+ +L +I+ L R K+ L E L++++F Sbjct: 249 KRIPELCIIEALYISILQGREEKYAKMLAAANEELRKNKF 288 >UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEV7_ACHLI Length = 281 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 11/255 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +NML+ E LS +ER V + ++ + S+ +A A S +V R C+ + Sbjct: 5 LNMLK----NKEALSMAERIVLDYLIENKTLLKDFSVEKIAEAAYTSPASVVRMCKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSV----ESYTGKIFESAMATLDHVRHSLDKS 116 GF DFK+ LAN + D + ++ K E+ + L+ + D+ Sbjct: 61 NGFKDFKIDFI--LANSKVEIPETSEYTDVILIKDQNNGKKAIENNIRALEETINLYDEK 118 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 +A L+ A+KI FG GSS V D K R N V + Q + ++ Sbjct: 119 TYTKAASLIMNARKILIFGKGSSFLVCKDLEMKLRRINKFCVAQGESHDQFVDASFINNK 178 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYM 235 DVV+ IS++G+TK ++ A LA+EN +I++T G+ LA + + + E Sbjct: 179 DVVIFISNSGKTKEIISSALLAKENKTPIISITRIGSSILADISDVVLYTSALESEFRSA 238 Query: 236 PMVSRLAQLTVIDVL 250 M SR++Q++V+D L Sbjct: 239 AMTSRISQMSVVDAL 253 >UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A459_ENTGA Length = 268 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 101/212 (47%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ I+S LS ++ K+A+ I+ + D + +A+ +N S V RF + + Sbjct: 1 MSVVTTIESIKNELSTTDLKLADYIVENLDEIPTMTSNVLAVHSNTSPAAVIRFSKKLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFKL L + + N ++ DDS ++ KI + +D LD+ + + Sbjct: 61 SKFSDFKLALTKDIENRIYNEYSDIQNDDSFQTAKNKILRNNKMIIDATDPILDEQTVQQ 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 VD + AK+I +G+G+S A D K+ R V++ D L N + Sbjct: 121 VVDKMFHAKRIYVYGVGTSVLAAEDIRQKWTRIGKTVIFDKDRYLLTQQMKNDGADSLFW 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG 212 ISH+G+ ++++ L ++A+ + ++ G Sbjct: 181 GISHSGKNRDVLSLVEIAKSLGMPTLGMSQLG 212 >UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=Lactococcus lactis RepID=A2RL41_LACLM Length = 283 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 132/285 (46%), Gaps = 18/285 (6%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ L I+ + + E+K+A+ I + + S +A E S + RF R + Sbjct: 1 MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGY 60 Query: 61 RGFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 GF K L+ S A + Y + VN+ ++ S K+ ++ +L Sbjct: 61 DGFSQLKQKLSASYAVHEDDEDYY-KEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDE 119 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 I AV L+ +A+ I FG+G+S+ VA D KF R V + D L +S ++ SD Sbjct: 120 IMAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHL-FVSSLSISDRK 178 Query: 178 VVVL-ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDV------PED 230 + + IS G TK ++ELA++ R + +IA+TS E+TL D ED Sbjct: 179 TIFIGISMKGETKEVIELARVVRGMEIPIIAITS-----REESTLGQMSDYILHSVSGED 233 Query: 231 TDIYM-PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 + +S +AQL V+D+L F + D L++ ++A+K Sbjct: 234 YQMRTAATMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIK 278 >UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=Anaerococcus RepID=C7REF2_ANAPD Length = 279 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 127/277 (45%), Gaps = 10/277 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M KI+ + E + S+ K+A+ IL P I + +A S+ + RF + + Sbjct: 1 MTYTIKIKERSEDFTPSDTKIAKYILDKPGEVIKINSQKLADLTGTSQSAIIRFVQKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNV-NEDDSVESYTGKIFESA----MATLDHVRHSLDK 115 +G+ KL +A+SL N + V + DD V G I E + +++++ +D+ Sbjct: 61 KGYTSLKLDIAKSLENDEINLKSEVISADDKV----GDIIEKSKINVISSIEKTYALIDE 116 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 I++A+D + A + G+GSS V D + K R Y D N + Sbjct: 117 DQISKAIDNIVYANFVYLAGIGSSGLVCEDFLYKLQRSGKKAFYETDAHTNLSLLTNIKE 176 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIY 234 D+++ I++T +K ++ A+ A+ A +I++T AG LA + + I + E Y Sbjct: 177 DDLLICITYTALSKEVLIAAEYAKTIGAKLISITKAGRGKLANMSDILIPIPEIEKKMRY 236 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKE 271 + SR A + D+L G+ + + NL KE Sbjct: 237 GAISSRFASQIITDILFYGYISKNMDEVVKNLMVSKE 273 >UniRef50_D2AR91 Putative transcriptional regulator, RpiR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AR91_STRRD Length = 299 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 9/290 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N++ +++ L L+ + + +A +IL P S+I + + SE T+ R R++ Sbjct: 10 VNLVATVRAVLPSLTPAAQAIARLILDDPGMVARSTITEFSAVSGTSEATIVRTARALGF 69 Query: 61 RGFPDFKLHLAQSLANGTP--YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + LA ++A P V ++ DD + K+ + L L+ + Sbjct: 70 AGYSQLRFALAAAVAREEPERLVPGDLGPDDPLTDVIAKVTRAESEALADTAAQLNPDRL 129 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 V+ +T A+++ +G+G+S VA D K R D L S +GDV Sbjct: 130 GAVVEAMTAARRVDVYGVGASGLVAADMAQKLMRIGRSSHAFTDAHLALTSAALLGEGDV 189 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLA--ITLDVPEDTDIYMP 236 V +S TG T +++ ++AR+ A +A+T+ P + A LA + + +T + P Sbjct: 190 TVGVSCTGETPDVIAPMRVARKAGATTVAITN--NPRSSLAELAEHVLVSAGRET-AFRP 246 Query: 237 --MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 + SR++QL ++D + G R L+ + AL E D + N Sbjct: 247 GALASRISQLLIVDCIFVGIAQRTFETSDAALRATRGALDEFMADTRRRN 296 >UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax=Enterobacteriaceae RepID=MURR_SALAR Length = 287 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L K+++ +++E+K+A +LA S MA + +S+ ++ +F + + Sbjct: 1 MLYLAKMRNAEGEFTENEQKIATFLLAHVGELKTVSSRNMAKQLEISQSSIVKFAQKLGA 60 Query: 61 RGFPDFKLHLAQSLA-------NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 GF + ++ L + + + +++ ++ +DS+E K+ + L+ + + Sbjct: 61 NGFTELRMALIEEHSVSREKKRDKAVHLHSSITSEDSLEMMARKLNREKIVALEETYNLM 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + ++L+++A I G+G SA V D K + V D +Q Sbjct: 121 DYERLEQVINLISKAPLIQITGVGGSALVGRDLSFKLMKIGFRVACEVDTHVQATIAQAL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLD-VPEDT 231 GDV + IS++G K +V A+ AR+ A VIA+TS A +PL R A TLD V +T Sbjct: 181 RQGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLADY--TLDTVSGET 238 Query: 232 DIY-MPMVSRLAQLTVIDVLATGF 254 + M +R AQ +V D+L G Sbjct: 239 EWRSSSMSTRTAQNSVTDLLFVGM 262 >UniRef50_UPI000196B715 hypothetical protein CATMIT_00151 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B715 Length = 282 Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 122/253 (48%), Gaps = 5/253 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++++I S +H SE+K+A+ I+ ++ ++ ++ + SE +V+RFC+ + + Sbjct: 4 NVIDEIYSSYDHFFDSEKKIAKYIMHHTSEVVNMTVGDLSQASGASEASVSRFCKRIGLK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTG---KIFESAMATLDHVRHSLDKSAI 118 GF K+ LAQ L P N ++ S+ I + + L + + + Sbjct: 64 GFHHLKISLAQELVE-IPSCNTTISNRISITDVNNSLDSILANKVEELTQTITMMKSNKL 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + +D + +++ I F +G++ VA D KF + +P S + + +N S D+ Sbjct: 123 DEILDCILKSRHIYFVAVGNTVPVALDGCFKFNQIGIPSSTSSILETELGMILNVSKEDM 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 V+ IS++G + ++ + A A +++T S + +A E+ IT E + Sbjct: 183 VIAISNSGESSGVLTAIKEAHNQKATTLSITNSDKSSIALESDYHITTATREKVYLEGYC 242 Query: 238 VSRLAQLTVIDVL 250 SR++ VI++L Sbjct: 243 FSRVSATAVIEIL 255 >UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDH7_9ACTO Length = 342 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 7/259 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L ++++ L L SER++AE IL P ++A +A + S TV RF + + Sbjct: 11 TVLVRVRAALPGLRPSERRIAEAILDDPHATAGLTVAELAAACDTSTTTVVRFYQRIGYG 70 Query: 62 GFPDFKLHLAQSLAN------GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 + D +L L + P + +++ DD+++ K+ + ++ LD+ Sbjct: 71 RYKDLRLDLTREATREQLETANLPAASGDIDRDDTIDDIIAKVAANETLSIADTAEILDR 130 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 A+ RAVD + A+++ FG+G+S V D K R + D + + + Sbjct: 131 DALARAVDCVLNARRVDSFGVGASGFVGLDLQQKLTRIGRTALSWLDTDAAWSAAVTLDE 190 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIY 234 V + ISHTG T VE +A A IA+T+ T LA A + +T E Sbjct: 191 QCVAIAISHTGTTAATVEFLAMAAAEGATTIAITNHDNTALAETADVVLTTAARETRFRS 250 Query: 235 MPMVSRLAQLTVIDVLATG 253 + SR+AQL V+D L TG Sbjct: 251 GALGSRIAQLMVVDCLFTG 269 >UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FC5_PEDPA Length = 280 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 8/257 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L + + E S+SE+KVA ++ P I + ++ VS TV R + + Sbjct: 3 NILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKICKS 62 Query: 62 GFPDFKLHLAQSL-ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G P K+ +A + + + Y VN D ++ K+ + L K+ + + Sbjct: 63 GLPGLKIQVASEIKVDDSLYTE--VNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKK 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A D++ QA I FG+G+S VA D KF R V+ + D L M+ V++ Sbjct: 121 ATDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQTLDTHL--MAVGLAKPNSVLI 178 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIY--MPM 237 ++S +G TK + ++A + +IA+T + +A+ +T+ +T D ++ + Sbjct: 179 VVSDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAAT 238 Query: 238 VSRLAQLTVIDVLATGF 254 S LAQL V+D+L + Sbjct: 239 TSLLAQLYVVDLLYYAY 255 >UniRef50_C9Q9L7 Helix-turn-helix protein RpiR n=6 Tax=Vibrio RepID=C9Q9L7_9VIBR Length = 281 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 127/257 (49%), Gaps = 13/257 (5%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++ K+++ + +++E+K++++I+ + S + +S+ +V R+ +S+ G Sbjct: 4 LINKVKTLVHSSNQNEQKLSQLIVERQFDLSELSATKVGALLGISDSSVIRYAKSLGCSG 63 Query: 63 FPDFKLHLA----QSLANGTPYVNRNVNEDDSVESYTGKIFESA----MATLDHVRHSLD 114 FPD KL LA Q +A V ++ DS T +I E A ++T++ +D Sbjct: 64 FPDLKLKLAAQAPQVMARTAQSVYASIETGDS----TAQIIEKAKHLFVSTIEQSIGLMD 119 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 ++ + L +A KIA G+G+SA VA D +K R V ++ D +Q + Sbjct: 120 AESVEQCAQQLLKANKIALAGIGASAIVAADINHKLIRAGFNVQFNQDYHIQIVQASLLK 179 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDI 233 DV++++S G T+ ++ + A++N A VIALT G +A+ A I E+ Sbjct: 180 ADDVLLVVSARGNTQEVLTAIERAQQNGAQVIALTRYGRDKVAQLADYVIPYSYTEEHSQ 239 Query: 234 YMPMVSRLAQLTVIDVL 250 + +L Q+ D++ Sbjct: 240 LGMVTPQLLQMAAFDIV 256 >UniRef50_B0NFU9 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NFU9_EUBSP Length = 285 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +LE I+ Q +++ +ERKVA+ +L +P A+ S+++ +A ++ VS+ TV R C + G Sbjct: 14 VLEVIKEQYDYIFSAERKVADFVLQNPQKAVDSNVSELAKQSGVSDATVVRMCHHIGYTG 73 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + F++ LA+ L + D+VE K+F+ T+ + +D + V Sbjct: 74 YYQFRISLARDLGKKQYGSSALAESRDAVE----KLFQEYAQTMLAIGSRIDADVMWNCV 129 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQR-MSCMNCSDG-DVVV 180 +LL K+ +G++ +A + R + Y ++ + M+ +N +D D+++ Sbjct: 130 NLLKTCKEAHIMAVGNTCPLAQYMGFRLGRLGIKSTY--NVAAEYFMNHVNLADQDDLLI 187 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G ++ +++ +L +E IA+T+ A +P++ A + E+ + + Sbjct: 188 AISQSGTSRQVIQGLELGKEKGLKSIAITAFAQSPVSNLADYVLLSAGKEEPFSFYKGYA 247 Query: 240 RLAQLTVIDVL 250 + + VID L Sbjct: 248 HMNETAVIDAL 258 >UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=Enterococcus RepID=C0X6G8_ENTFA Length = 283 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 111/212 (52%), Gaps = 2/212 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + I+ + + SK +++A+ IL P + + +A + S +V RF + + Sbjct: 1 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF 60 Query: 61 RGFPDFKLHLA--QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + + KL +A Q+ +NG ++ V DDSV++ K+ AT++ + +++DK A+ Sbjct: 61 DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA+ + +A+KI G+G+S+ ++ +KF R +++ D + + D+ Sbjct: 121 ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS 210 ++ +S++G TK + ++A+ A VI +TS Sbjct: 181 LITVSYSGLTKEALIACEIAKNRGATVIFITS 212 >UniRef50_B7GSI0 Transcriptional regulator, RpiR family n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GSI0_BIFLI Length = 289 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 5/235 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I+ L+ L ++RKVA L + D IA +A E VS TV R C + Sbjct: 12 SILARIRLALDALDPAQRKVARFFLENSDVIGDLPIATVARETGVSAGTVVRTCADLGCH 71 Query: 62 GFPDFKLHLAQSLANGTPYVNRN-VNEDDSVESYTGKIFESAMATLDHVRH---SLDKSA 117 G+ + ++ +A+ A + R D S +I LD +R LD A Sbjct: 72 GYREMRILIARDNAIRSLLEQRGHARADGEAGSEGERIIARIRGMLDMLRELPDCLDAGA 131 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 NRA++++ A+ I G S+ VA + ++ R+ V + D + Q +S GD Sbjct: 132 FNRALEMIRDARGIVIVASGLSSGVAANLESRLLRYGRLVTFVRDPLGQDISASLLKPGD 191 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDT 231 +++ IS +G ++ V ++A N A +A+TS A + LA AT + P T Sbjct: 192 LIIAISGSGENRHTVHAVEVATANGADALAVTSFANSSLATRATTTLVASTPATT 246 >UniRef50_C3RI81 Sugar isomerase n=1 Tax=Mollicutes bacterium D7 RepID=C3RI81_9MOLU Length = 296 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 18/289 (6%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEP-TVNRFCRSMD 59 M ++EK+ + E +S E +A IL + +H EA ++ P TV R C+ +D Sbjct: 1 MLIIEKLNLK-EKMSDGEESIAAFIL-TLGKELHKYSTRNIAEATLTSPATVIRLCKKLD 58 Query: 60 TRGFPDFKLHLAQSL-----ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 +GF DFK + + G N N +D++ KI T+ L Sbjct: 59 FKGFDDFKEQFLKEINYLDQQYGKVDANFPFNRNDTMMKTAHKISHLYEDTVTDTMTLLH 118 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQ--RMSCMN 172 + +A+ LL + I F G++ +A K + VV S+++ Q +SC+ Sbjct: 119 HDDLQKALRLLKNSNSIHIFSTGTALNLAESFKEKMLKIGKNVVISNNLNYQLYEVSCI- 177 Query: 173 CSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDT 231 GD+ ++IS++G T N +++AQ + N +IA+TS G LA+ A+ +T+ E Sbjct: 178 -PKGDIAIIISYSGETINTIKIAQTCKNNKIPIIAITSFGENTLAKLASCKLTISTKE-- 234 Query: 232 DIYMPM---VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +Y + + LA ++D+L + F L + DN ++ + L+ R Sbjct: 235 SLYHNLGDFSTHLATHLMLDILYSVFFLEDYDQNYDNKIKITKDLEALR 283 >UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU Length = 291 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 6/217 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +++ +L+ S SE+ +A+ IL + ++ ++ S+ +A + S T+ R CR + Sbjct: 1 MSIMTQLEFELD-FSSSEKTIAKYILDNGEDILNLSVKELAKQTYTSPATIVRLCRKLGL 59 Query: 61 RGFPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ DFK+ + L VN DS +I ++ + +D Sbjct: 60 NGYGDFKIKYSAELQFDKKNKKRVDVNFPFGNTDSNSQIAYRIANLHQEAIEDTLNLVDF 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 +++ ++LL QA++I FG G+S D +K R V Q CS Sbjct: 120 KNLDKIINLLDQARRIYLFGNGNSLLAGFDFQHKMMRIGKMVEMRAHAGEQGFLSYTCSP 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG 212 DV +LIS++G T +VELA+ ++ ++ +TS G Sbjct: 180 DDVAILISYSGETNEMVELAKFLKKMHVPLLGITSIG 216 >UniRef50_B0PG82 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG82_9FIRM Length = 296 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 20/290 (6%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K+Q L L +SE+ A ++ + ++ ++ E N S T+ R C+ M RGF D Sbjct: 14 KLQLILPSLPRSEKAAATYLVENLHRIGSLNLNTISAETNSSGATIIRLCKHMGYRGFLD 73 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLD------HVRHSLDKSAIN 119 F+ + +A PY + D+V + I E A +D H +L Sbjct: 74 FRNSV--RMAEYPPY-----DGGDAVPAEHASIRELMCAVIDKNNETVHNTLALISDQYE 126 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A L +A I FG G + KF + V +D +Q + GDV Sbjct: 127 PAALALREANIITMFGNGDAIIPCQLIGMKFMKVGKACVVLNDQDMQMFCASSIRSGDVA 186 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMV 238 + +SHTGR+K++VE ++A E A+ I +T SA +PL + + A+ ++TD + Sbjct: 187 LAVSHTGRSKSVVEAMRIAYERGAITIGVTASAKSPLLKHCSYALFTGTVDETDTGDIIS 246 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDD 288 R+A+ T+++ L LR +L+ VK+ + ++ Q+ LSD+ Sbjct: 247 RRIAEQTILETL----YLRAVDDAGKDLEEVKK--QGAKVIAQMTKLSDE 290 >UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus suis RepID=A4VXR0_STRSY Length = 275 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 5/219 (2%) Query: 11 LEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHL 70 +E+L+ +E K+ + I + +I +A A VS T++R + M F K+ + Sbjct: 10 IENLTPTENKLLDYIEENIHRIETMNIYQLADNAGVSTATISRISKKMGYSNFNKLKIEI 69 Query: 71 AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKK 130 A+S + +N + DS++ + K+ S + L+ + AV LL A + Sbjct: 70 AKSKYD--DLLNAHFTPSDSIDDISTKLIHSITISNQQTVSFLNLEELEAAVKLLQSASR 127 Query: 131 IAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKN 190 I FG+G+S V D K R +++ D +Q + +GD+ + IS++G TK Sbjct: 128 IYLFGVGASGIVCSDFYYKLSRIGKTCIFAQDTHIQMANIATAGNGDLAIGISYSGMTKE 187 Query: 191 LVELAQLARENDAMVIALTSAGTPLAREATLA-ITLDVP 228 +VE + A+EN I +T GT + A LA IT +P Sbjct: 188 VVEPLRFAKENGVSTITIT--GTGKNQLADLADITFRIP 224 >UniRef50_C0X0S9 RpiR family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X0S9_ENTFA Length = 285 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N++E ++ Q E + +E + + IL+ + +H SI +A N S T+ R C+ +T Sbjct: 4 LNLIECLE-QKERYTYNEGLIIDFILSHTERVLHMSIYELAEATNSSTSTIVRLCKKTET 62 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNED------DSVESYTGKIFESAMATLDHVRHSLD 114 GF +FK+ L++ L + RNV+ + DS KI + T+ + L Sbjct: 63 SGFKEFKIRLSRDLEIHYQAI-RNVDANMPFLAQDSDLLIAKKIAQLTTETVQSTQQLLT 121 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 ++ +N+++DLL A+ I G+ +S D K R + + Q +N + Sbjct: 122 EAMLNKSIDLLLTAENILAVGVSNSYIRLTDFQTKLLRIQLFIHLIPYQAEQFYLAINAT 181 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 DV +L+S++G T +V A++ E +IA+TS + LA+ AT+ + + E D Sbjct: 182 KNDVAILVSYSGNTAEIVNEARIFAEGGTPIIAITSDLNSQLAKYATVILPIPNVEHADF 241 Query: 234 YMPMV-SRLAQLTVIDVL 250 + S+LA +++VL Sbjct: 242 KVSTFSSQLAIEYILNVL 259 >UniRef50_C4F999 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F999_9ACTN Length = 288 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 16/235 (6%) Query: 17 SERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLA- 75 SE+ + + ILA+ + A + A +A ++ SE +V+RFC+ + + + F+ LA+ LA Sbjct: 23 SEQHIVDFILANTERAPQMTSAQLARASSTSEASVSRFCKKLGFKNYRSFQFSLARDLAA 82 Query: 76 -NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFF 134 G V V DD +E I + ++ +LD + R VDL +A + F Sbjct: 83 REGDERVTGEVTLDD-IEQSLANIKHAKQREIEATLDALDPDTLRRVVDLFRRAGLVMFA 141 Query: 135 GLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVEL 194 +G++ AVA DA KF + + V + + DV+VL+S++G+++ L + Sbjct: 142 AVGNTNAVAIDAAIKFGQLGIRCVANTITESSTSLALTMGKDDVLVLVSNSGKSQRLERI 201 Query: 195 AQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVID 248 + A+ A VI + PLAR A DI + V+ A LT +D Sbjct: 202 LRAAKHGGATVILICGNENAPLARLA------------DIVLRTVNYEALLTTVD 244 >UniRef50_A8GCW7 Transcriptional regulator, RpiR family n=1 Tax=Serratia proteamaculans 568 RepID=A8GCW7_SERP5 Length = 380 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 1/215 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I+++ LS+ E KVA+ IL A ++I +A +A VS T+ RF +++ Sbjct: 126 DIVYQIRARQNQLSQQEAKVAQTILDDIAFASSATIELLASQAGVSPATITRFAKTIGCD 185 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 D ++ LAQ+ +G+ Y+ + + ++ TL ++ SA+ A Sbjct: 186 DIRDLRMKLAQASVSGSRYLTAQTTPNGPPRLWLQRV-NDVETTLHQQLQQVEHSALIDA 244 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++Q K + FG+ S ++ + P D L RM+ S V+L Sbjct: 245 SQQVSQCKSVHIFGVNSMGLYVNELQQRLVGLGYPAFACQDAALMRMTASTLSTQQCVIL 304 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLA 216 +S +G +L+ A+LA A IAL AG+ LA Sbjct: 305 LSLSGENTDLLNAARLAGATGAYRIALAPAGSTLA 339 >UniRef50_UPI0001C316A3 transcriptional regulator, RpiR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C316A3 Length = 280 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 113/251 (45%), Gaps = 8/251 (3%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++++L L S+RK+AEV+L P + + S+ +A A ++ +V RFC+ RG Sbjct: 7 LLPHLRTRLPLLGGSDRKIAEVVLRQPQDVVFWSVRELADAAGTAKSSVVRFCQGSGLRG 66 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNE--DDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D KL LAQ A + R + D G + + TL ++ +SA + Sbjct: 67 FHDLKLILAQETA-----LARESDPLAHDPAGDVLGAVVRAGAETLRDAAATVQRSAFDA 121 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 LL +A + G G S +A DA + V D Q ++ S GD + Sbjct: 122 TAGLLARADAVLVVGGGGSGPLAQDAAQRLRVIGVRAAAPADAPGQHVAAALLSRGDACL 181 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH G T +E A + A A+TS AG+PL A + + + S Sbjct: 182 AISHRGATAGTLEAVAAAADAGAATAAITSFAGSPLTGLADHVLVAGARAASPRLAALTS 241 Query: 240 RLAQLTVIDVL 250 RLA + V+D L Sbjct: 242 RLAHVAVLDAL 252 >UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAG5_FUSMR Length = 283 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 124/270 (45%), Gaps = 8/270 (2%) Query: 11 LEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHL 70 L S +E+K+A IL + I +I M+ + S +++RF + + F KL + Sbjct: 14 LPSFSPAEQKIALFILENTFAVIDMTIEDMSEKIGTSVASISRFTKKIGFENFYLLKLGI 73 Query: 71 AQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAK 129 A+ N + ++ NVN++ + + ++ A L+ + + +++ A Sbjct: 74 AKEFVNSSNKTISLNVNKNSNATDIYTNVAKTNSAILEESIEYFNTDKMEEISEIILNAN 133 Query: 130 KIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTK 189 I F +G+S +A ++ KF R + +D Q + D DV ++ SH+G K Sbjct: 134 HIYLFAMGASGILAKESWYKFIRLGLKCSMIEDFHSQLLQASILDDTDVALIFSHSGINK 193 Query: 190 NLVELAQLARENDAMVIALTS-AGTPLAREATLAITL---DVPEDTDIYMPMVSRLAQLT 245 +++ L ++ E A I +T+ A TP ++ + + P D + SR+ QL Sbjct: 194 DVLTLLEIINETPAYSIGITNYARTPFSQSVDICLFFSENSTPMDK---VGFSSRIPQLI 250 Query: 246 VIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 +I+ L +L+ G K + +R K+ K+ Sbjct: 251 IIESLYRILSLKLGKKSKICQERYKQIFKK 280 >UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIB3_RHOER Length = 291 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 4/254 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++L +I++ L LS +E ++AE+I A P A ++ +A A+ S TV R + + Sbjct: 11 VDLLARIRASLSSLSPAELRIAEIIEADPSLASTLTVNDLAERASTSTATVVRTAKRLGF 70 Query: 61 RGFPDFKLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P +L LA +GT + ++ DS K+ E L D +A Sbjct: 71 EGYPQLRLALAAISGSGTENTIPLGVDIVAADSAGEVMAKLAEFESEQLKGTAQLTDPAA 130 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + V + A+++ +G+G+S VA D K R +V D +S D Sbjct: 131 LEEVVSRIRSARRVEVYGIGASGIVAQDLTLKLSRIDVNCRVHLDRDAAMVSASLLGPDD 190 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 + V ISH+G T ++VE LAR A A+T A + LA ++ + E Sbjct: 191 IAVGISHSGETSDVVEPLALARRTGASTAAITGGARSTLAVQSHHVLLTAGREFGFRSAA 250 Query: 237 MVSRLAQLTVIDVL 250 M SR QL V+D + Sbjct: 251 MASRTGQLLVVDTI 264 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Ta... 367 e-100 UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=... 295 2e-78 UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=B... 294 2e-78 UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Ga... 294 3e-78 UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putativ... 293 4e-78 UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes Rep... 289 7e-77 UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales Re... 289 1e-76 UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=D... 284 2e-75 UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=T... 284 2e-75 UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=... 284 4e-75 UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=... 277 2e-73 UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=T... 275 1e-72 UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulat... 275 1e-72 UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n... 275 1e-72 UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=B... 274 3e-72 UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator ... 273 4e-72 UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=A... 273 5e-72 UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID... 272 7e-72 UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus ... 271 2e-71 UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=C... 271 2e-71 UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=... 270 3e-71 UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=A... 270 4e-71 UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=P... 270 5e-71 UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseria... 269 7e-71 UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=B... 269 7e-71 UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Ac... 269 1e-70 UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia... 268 1e-70 UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n... 268 2e-70 UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax... 266 5e-70 UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Ba... 265 1e-69 UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulat... 265 1e-69 UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Se... 262 1e-68 UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=P... 261 2e-68 UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=B... 261 3e-68 UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostri... 259 7e-68 UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=H... 259 9e-68 UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopo... 258 2e-67 UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostri... 257 2e-67 UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=C... 257 3e-67 UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostri... 257 4e-67 UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttle... 257 4e-67 UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus ... 257 5e-67 UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n... 255 2e-66 UniRef50_D2AR91 Putative transcriptional regulator, RpiR family ... 255 2e-66 UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=O... 255 2e-66 UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=... 255 2e-66 UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus ... 254 2e-66 UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator... 254 2e-66 UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=F... 254 3e-66 UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=K... 253 4e-66 UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=M... 253 4e-66 UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteri... 253 4e-66 UniRef50_B9K581 Transcriptional repressor of rpiB expression; tr... 253 5e-66 UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=B... 252 8e-66 UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Sta... 252 1e-65 UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATC... 252 1e-65 UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=P... 251 2e-65 UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonel... 250 3e-65 UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=P... 250 5e-65 UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oen... 250 5e-65 UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=C... 249 7e-65 UniRef50_P44540 Uncharacterized HTH-type transcriptional regulat... 249 7e-65 UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=C... 248 2e-64 UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Cl... 247 3e-64 UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. ... 247 3e-64 UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family pr... 247 3e-64 UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=B... 247 3e-64 UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteracea... 247 4e-64 UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=P... 247 5e-64 UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=G... 247 5e-64 UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment)... 247 5e-64 UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Er... 246 5e-64 UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=L... 246 8e-64 UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostri... 245 9e-64 UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulat... 245 1e-63 UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=B... 245 1e-63 UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=... 245 1e-63 UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=A... 245 1e-63 UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus la... 244 2e-63 UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejue... 242 8e-63 UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR... 241 2e-62 UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=K... 241 2e-62 UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium ... 241 2e-62 UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteri... 241 2e-62 UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=T... 241 2e-62 UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=R... 241 3e-62 UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=G... 241 3e-62 UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n... 240 3e-62 UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteoba... 240 3e-62 UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=C... 240 4e-62 UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=At... 240 5e-62 UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=B... 240 5e-62 UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collins... 240 5e-62 UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus ... 239 6e-62 UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=A... 239 7e-62 UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=A... 239 8e-62 UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=E... 239 8e-62 UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=B... 239 1e-61 UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostri... 238 1e-61 UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor... 238 1e-61 UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_... 237 3e-61 UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=A... 237 3e-61 UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collins... 236 7e-61 UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=F... 235 1e-60 UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus si... 235 1e-60 UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=... 235 1e-60 UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostri... 235 2e-60 UniRef50_Q184N2 Putative phosphosugar-binding transcriptional re... 235 2e-60 UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus pl... 234 3e-60 UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=S... 234 3e-60 UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulat... 234 3e-60 UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=S... 234 3e-60 UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n... 233 4e-60 UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Provide... 233 4e-60 UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=B... 233 5e-60 UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=B... 233 6e-60 UniRef50_P26833 Uncharacterized HTH-type transcriptional regulat... 233 7e-60 UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=G... 232 1e-59 UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, ... 232 1e-59 UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=... 232 1e-59 UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulat... 232 1e-59 UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 Re... 232 1e-59 UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax... 231 2e-59 UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillac... 230 3e-59 UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=At... 230 4e-59 UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=F... 228 1e-58 UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp... 228 2e-58 UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=A... 228 2e-58 UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hy... 227 3e-58 UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteoba... 227 3e-58 UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostri... 227 3e-58 UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=R... 227 4e-58 UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma p... 227 4e-58 UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio ... 226 8e-58 UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=R... 226 8e-58 UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=A... 226 8e-58 UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocace... 225 1e-57 UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=... 225 1e-57 UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecali... 225 1e-57 UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus ... 225 1e-57 UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostri... 225 1e-57 UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=L... 225 2e-57 UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=B... 225 2e-57 UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=P... 225 2e-57 UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=K... 224 2e-57 UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU 224 2e-57 UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family ... 224 2e-57 UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=P... 224 3e-57 UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax... 224 3e-57 UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=P... 223 4e-57 UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium bu... 223 4e-57 UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales ... 223 4e-57 UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enteroco... 223 5e-57 UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n... 223 5e-57 UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=P... 223 5e-57 UniRef50_A5VV40 Transcriptional regulator, RpiR family n=37 Tax=... 223 6e-57 UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax... 223 6e-57 UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rh... 223 7e-57 UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulat... 223 8e-57 UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=B... 223 8e-57 UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulat... 222 8e-57 UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostri... 222 9e-57 UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales ... 222 1e-56 UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales ... 222 1e-56 UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=E... 222 1e-56 UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family... 221 2e-56 UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=F... 221 2e-56 UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostri... 220 4e-56 UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=L... 220 4e-56 UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family ... 220 4e-56 UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=P... 219 8e-56 UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID... 219 9e-56 UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=... 219 1e-55 UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus ... 219 1e-55 UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=D... 218 1e-55 UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enteroba... 218 2e-55 UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 T... 218 2e-55 UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=A... 218 2e-55 UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus... 218 2e-55 UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=A... 218 2e-55 UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=S... 218 2e-55 UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=... 218 2e-55 UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n... 218 2e-55 UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU 217 3e-55 UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=L... 217 3e-55 UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostri... 217 4e-55 UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, ... 216 7e-55 UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmone... 216 8e-55 UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=R... 216 8e-55 UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=S... 215 1e-54 UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus ... 215 1e-54 UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacte... 215 1e-54 UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteur... 215 1e-54 UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus ... 215 2e-54 UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteri... 215 2e-54 UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=F... 215 2e-54 UniRef50_C7TGD6 Transcriptional regulator, RpiR family n=3 Tax=L... 215 2e-54 UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=St... 214 3e-54 UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=R... 214 3e-54 UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus ... 214 3e-54 UniRef50_A6DTP0 Putative transcriptional regulator, rpiR family ... 214 4e-54 UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n... 213 5e-54 UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp... 213 8e-54 UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostri... 212 1e-53 UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=La... 211 2e-53 UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n... 210 3e-53 UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillale... 210 5e-53 UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=B... 210 6e-53 UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=A... 209 7e-53 UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=L... 209 7e-53 UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, ... 209 7e-53 UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus pl... 209 8e-53 UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillu... 209 1e-52 UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional... 208 1e-52 UniRef50_UPI0000D541FA probable transcriptional regulator n=1 Ta... 208 1e-52 UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1... 208 2e-52 UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacte... 208 2e-52 UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Ba... 208 2e-52 UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostri... 207 4e-52 UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=E... 206 5e-52 UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1... 206 5e-52 UniRef50_Q89XK4 Transcriptional regulatory protein n=1 Tax=Brady... 206 5e-52 UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, ... 206 5e-52 UniRef50_P46117 Uncharacterized HTH-type transcriptional regulat... 206 5e-52 UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=P... 206 6e-52 UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=S... 206 7e-52 UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=C... 206 7e-52 UniRef50_P37767 Uncharacterized HTH-type transcriptional regulat... 206 8e-52 UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacte... 206 8e-52 UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonel... 205 1e-51 UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=La... 205 1e-51 UniRef50_C0Q155 Protein rpiR n=2 Tax=Salmonella enterica RepID=C... 205 1e-51 UniRef50_A4CAD1 Transcriptional regulator n=1 Tax=Pseudoalteromo... 205 1e-51 UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=S... 205 1e-51 UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pe... 205 2e-51 UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acid... 205 2e-51 UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdema... 205 2e-51 UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium ... 204 2e-51 UniRef50_Q21ZX8 Transcriptional regulator, RpiR family n=4 Tax=C... 204 2e-51 UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=... 204 3e-51 UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax... 204 3e-51 UniRef50_Q38V38 Putative transcriptional regulator with a sugari... 204 4e-51 UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus ... 203 6e-51 UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collins... 203 7e-51 UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=M... 203 7e-51 UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=S... 203 8e-51 UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax... 202 1e-50 UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macroco... 201 2e-50 UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=D... 201 2e-50 UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator... 201 2e-50 Sequences not found previously or not previously below threshold: >UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Tax=Gammaproteobacteria RepID=HEXR_ECOLI Length = 289 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT Sbjct: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR Sbjct: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV Sbjct: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR Sbjct: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR 289 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR Sbjct: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR 289 >UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=cellular organisms RepID=Q1QSE2_CHRSD Length = 289 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 176/280 (62%), Gaps = 2/280 (0%) Query: 1 MN--MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM 58 M+ + ++++ ++EH +SE+KVA +L P++ IH I +A EA VSEPTV RFCR++ Sbjct: 1 MSSALFDEMRRRMEHFRRSEQKVARFVLRHPEDVIHMRIVDLATEAKVSEPTVVRFCRAL 60 Query: 59 DTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF DFKL LAQ LA G+ + ++N+ DSV + IF+S + TL VR LD +A+ Sbjct: 61 GCNGFQDFKLKLAQMLATGSQFAQFSMNDSDSVAEFAHNIFDSTVGTLLSVRDRLDHAAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV L A ++ F+G G+S AVA DA +KFFR + D +Q MS + + DV Sbjct: 121 GKAVTALAMANRVEFYGFGASGAVAFDAQHKFFRLQISTAAYTDPHMQNMSAVTLTPRDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 VV IS TGRT+ LV +LARE A VI L + +PLA E TL + +DV EDT+IY PM Sbjct: 181 VVAISQTGRTRALVASVRLARETGATVIGLCPSDSPLASEVTLPLYIDVHEDTEIYTPMS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+A L +IDVLA G RG K + LK VK++L RF Sbjct: 241 SRVAHLVIIDVLAVGVAKTRGPKLAEQLKSVKKSLVPLRF 280 >UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=Burkholderiaceae RepID=Q1LPJ6_RALME Length = 338 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 107/276 (38%), Positives = 162/276 (58%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 M ++I + + L SER++A+ + + I ++ +A A VS+PT+ RFC ++ G Sbjct: 1 MRDRILAVYDSLRPSERRLADYVARHGASVIRLTMPELADRAGVSQPTIARFCAALGYDG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F +FKL AQ++ GTP+V+++V DD GK+F+ +ATL VR++L I + Sbjct: 61 FKEFKLQFAQNVGGGTPFVHQDVEADDRPADIAGKVFDRTIATLMSVRNALSADQIEHGI 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A++I F+G G+S VA D +KFFR +P D + MS GDV VL+ Sbjct: 121 RLLAGARRIEFYGCGNSGIVALDIQHKFFRLGIPTTAYSDPHVFSMSAALLRPGDVAVLV 180 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S++GRT +++ A LAR + A V+ALT +G+PLAR A + + DV ED+++Y PM SR+ Sbjct: 181 SNSGRTWDMLTAATLARSSGASVLALTHSGSPLARLADVCVFSDVEEDSEVYTPMTSRIC 240 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L + DVLA G L R L+R K L+E R Sbjct: 241 HLVLGDVLAAGVALDRADSVAAGLQRAKAHLRERRI 276 >UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Gammaproteobacteria RepID=B8KWX3_9GAMM Length = 337 Score = 294 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 146/277 (52%), Positives = 195/277 (70%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+LE I L L+KSE KVA+ IL+ PD A SIA++A A VSEP+VNRFC+ Sbjct: 52 NLLEDINQSLPGLNKSEVKVAQAILSDPDAATRMSIASLASRAGVSEPSVNRFCKRFGAS 111 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GFPDFKL LA S+ +G Y++R V D +++Y GK+F++A++ L + L I RA Sbjct: 112 GFPDFKLRLATSMVSGVRYISRAVEFSDDIDTYPGKLFDNAISALVAAKEQLPTGDIARA 171 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L QA++I FFGLG+SAAV DA +KFFRFNVPV D ++QRM S GDV + Sbjct: 172 VDFLAQARRIHFFGLGTSAAVTKDAEHKFFRFNVPVTNHQDPLMQRMLAAAGSVGDVFFI 231 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISHTGRT+ LVE+A+LAR+ +A V++LT+ +PLA+E+ AITL + E+T+ Y+PM SRL Sbjct: 232 ISHTGRTRALVEVAELARQTEATVVSLTAPQSPLAQESDCAITLTIGENTEEYLPMTSRL 291 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 QL VIDVLATG TLRRG +F +L R+K++LK +R Sbjct: 292 VQLAVIDVLATGVTLRRGERFLPHLARIKDSLKATRL 328 >UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ITC5_RHOCS Length = 280 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 110/275 (40%), Positives = 164/275 (59%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I+S L +SE+K+A+++L P +++S+A +A +A+VS+PTV RFCRS+ G Sbjct: 1 MLDRIRSMRPGLRRSEQKIADIVLRQPHAVVNASVAELAHDADVSQPTVVRFCRSIGCSG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + DFKL LAQ LA G V DD V K+ ++ L +R+ L+ A+ AV Sbjct: 61 YQDFKLRLAQDLAAGPARPEDAVRPDDPVAEIAAKLLNRSIGALTRLRNQLNPDALEAAV 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +LT+ +++ +G G+S VA DA NKFFR +PVV D +Q M+ V + + Sbjct: 121 QVLTETRRLDCYGFGASGVVALDAQNKFFRLGLPVVAHTDSHVQAMAAALLGPQGVALAV 180 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S +GRT+ L+ LA A VIA+T+ G+PLA AT+ + +D PED+ Y PM SR+A Sbjct: 181 SRSGRTRELLRSVDLALAGGARVIAITAGGSPLAGRATVPLLVDAPEDSSPYTPMTSRIA 240 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L V+D+L LRRG D L+R AL++ R Sbjct: 241 HLAVVDILQVATALRRGVHTGDPLRRPAAALRDDR 275 >UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes RepID=Q8R7I8_THETN Length = 285 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 152/276 (55%), Gaps = 1/276 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ KIQS L+ +E+KVA+ +L + ++ I+ SI +A + E T+ RFCR + Sbjct: 8 NVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLS 67 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +FKL+LA+ +A ++ N++ +D ++ KI + + L S + +A Sbjct: 68 GFQEFKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSELEKA 127 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD + A+KI F+G+G+S A DA KF R + V + D +Q +S ++ +D DV V Sbjct: 128 VDAIINARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLTDKDVAVG 187 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G TK+ VE +LA+E A VIA+T+ A +P+ A + + E + S+ Sbjct: 188 ISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRSGALTSK 247 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +AQL ++D+L T ++ K L + +A+ E Sbjct: 248 IAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEK 283 >UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales RepID=C0ZD50_BREBN Length = 288 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 2/278 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++++ LS E+++A+ IL IH SI +A + ++ TV R CR + RG Sbjct: 11 VLTQLRAIYTQLSGKEQQIADYILEHASEIIHFSITELADQCQCADATVFRLCRRLGFRG 70 Query: 63 FPDFKLHLAQSLANGTPYVNRNVN-EDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + FK+ LA + N +++ +N +DD V + KIF + + T+ + ++K + + Sbjct: 71 YQAFKIALASEVTNPKQTIHQEINLDDDDVSAIAEKIFTANIETIRDTQQIINKDELMKI 130 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V L A +I F+G G SA +A DA +KF R +P +Y D Q MS + G VVV Sbjct: 131 VSCLENASRIEFYGSGGSAVIAQDAYHKFMRTGIPCLYHSDAHYQVMSASLLTKGAVVVG 190 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G K+++ Q+A+E A I +TS G +PL R A + + E + SR Sbjct: 191 ISHSGSNKDILAALQVAKEAGAKTIGITSYGKSPLVRLADMCLYTTSRETVFRTEALSSR 250 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 LAQL++ID+L +LRR N++ ++EA+ R Sbjct: 251 LAQLSLIDLLYVAVSLRRQEDTIANIQHIREAISLKRL 288 >UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=Dictyoglomus RepID=B8E0M8_DICTD Length = 281 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 144/278 (51%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++LEKI+ Q E SE KVA ILA +H I +A VSE T+ R C+ + R Sbjct: 4 SILEKIKEQKESFRDSEEKVANYILARWQEVLHLPITELAERIGVSEATIVRMCKKLGLR 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ LA V++ V E D +E+ K+F + + ++ + + I RA Sbjct: 64 GFQELKIALATEKIQPIKTVHQAVQEGDDLETILKKVFSANIRAMESTLNVISVKEIERA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D + A+++ +G+G S VA DA +KF + +P V D + MS DVV+ Sbjct: 124 IDAILNARQLQIYGVGGSGPVALDAQHKFMKTGIPTVAYIDSHMMAMSASILEPQDVVIG 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G +K++ E +LA+ A I +T A TPL R + +++ E +R Sbjct: 184 ISASGSSKDIFEALELAKNRGATTIGITHYAKTPLDRVLDIKLSVSSEETFYRTESTSAR 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL++ID L G L+R K +NLK +EA+ RF Sbjct: 244 IAQLSIIDTLYIGVALKRLDKMIENLKLTREAIVPKRF 281 >UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSQ6_9FIRM Length = 287 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 85/276 (30%), Positives = 149/276 (53%), Gaps = 1/276 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+S + L+K+E+KVA+ IL + +H SI +A + +E T+ R C+ + RG+ Sbjct: 12 LPRIRSIYKALTKAEQKVADYILENAAKVVHLSITELAEVSGSAEATIFRLCQKVGYRGY 71 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 FK+ LA L V ++VN DS+ K+F L +D++A+++AV Sbjct: 72 QHFKIALAGDLYTPAELVYKDVNAGDSMGVIARKVFHDINEGLQDTLKIIDEAALDKAVA 131 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 +T+A++I +G SA +A D +F RF +PV D +Q +S GD+ + +S Sbjct: 132 AITKARRIDAYGSAGSAVIAADIEYRFMRFGIPVRAYADPHMQIISAALMQPGDLAIAVS 191 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 HTG ++L++ +A++N A VIA+TS +PL++ A + + E M +RL Sbjct: 192 HTGANRDLLDSVAMAKQNGATVIAITSYMKSPLSKLADITLCGSAKETEYRSEAMAARLV 251 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L ++D L G L R +N++++++A+ R Sbjct: 252 HLAIVDALYVGVMLDRQDCIVENMEKIRKAIAIRRV 287 >UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=cellular organisms RepID=A9BXM8_DELAS Length = 323 Score = 284 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 110/280 (39%), Positives = 167/280 (59%), Gaps = 4/280 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I + L L+ +E++VA ++LA P + +A A+VS+PTV RFCRSM G Sbjct: 43 MLDRITASLPSLAPAEQRVARLVLADPRAFARQPVRELAERAHVSKPTVVRFCRSMGYDG 102 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 DFKL LA S++ G P+++R+V+ DD K+ ++A+A R++ +AI +A Sbjct: 103 LADFKLKLAGSVSEGVPFIHRSVDTDDKTSDVMVKVVDNAVAAFLQYRNAASTTAIEQAA 162 Query: 123 ----DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 ++I F+G G+S VA DA +KFFR V + + D +Q MS GD Sbjct: 163 QAIASTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGVTSLATSDGHMQVMSATLLGPGDC 222 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 V+IS++GRT++L++ A +AR+N A IA+T++G+PLA + + D PE D Y PMV Sbjct: 223 AVIISNSGRTRDLMDAADIARKNGATTIAITASGSPLASACHIHLAADHPEGYDRYSPMV 282 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SRL L VIDVLAT LR G + L+++K L+ R+ Sbjct: 283 SRLLHLLVIDVLATCVALRIGPALQPALEQMKNNLRAKRY 322 >UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=Burkholderiaceae RepID=Q3JNN8_BURP1 Length = 339 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 110/277 (39%), Positives = 168/277 (60%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ML +I++ L SERK+A+ +LA+P + S+ +A A S+PT+ RFC+++ Sbjct: 7 TMLPRIETIRAQLRPSERKLADFVLAAPREVLDLSMTELAARAGASQPTIARFCQALGCS 66 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +FK+ LAQS+A G V R+V D+ GK+F+ + L VR+SL +++ A Sbjct: 67 GFREFKIRLAQSVAPGVASVYRDVEPDERAPGIIGKVFDRTIGALIEVRNSLSATSVAEA 126 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++LLT+A +I F+G G S A D +KFFR VP V D MS DVVV Sbjct: 127 IELLTRASRIEFYGAGGSGIAAQDIQHKFFRLGVPSVAYSDPHTFSMSAALLGANDVVVA 186 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TGRT+++V+ A+ A A VI++T + +PLA+ +T+++ +V E+TD++ PM SR+ Sbjct: 187 ISNTGRTRDIVDAARAALACGAKVISITHSHSPLAQLSTVSLASNVAEETDVFSPMTSRM 246 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + L + D+LA G LRRG + D L R KEA+ R Sbjct: 247 SHLAIGDILAVGVALRRGPELVDRLGRAKEAITRRRI 283 >UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q8T9_9THEO Length = 282 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 143/280 (51%), Gaps = 1/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L I+ SE K+A+ IL + D SI +A + SE ++ RFCR++ + Sbjct: 3 DILTVIKELEATFKPSEAKIAKYILDNADVVTELSINELARACDTSEASIVRFCRTIGLK 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ +A SL+ T ++ + +DD V KI +D+ LD +I +A Sbjct: 63 GFQELKIKIAVSLSKQTKKLDGGITDDDDVSDVIQKIANFNKQAIDNTISLLDVKSIIKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L+ A KI F+G+ +S VA+DAM KF R N+P D LQ S N GDV Sbjct: 123 VDALSNANKIDFYGVAASGTVAYDAMLKFARINIPCTAYQDTHLQLTSAANLKKGDVAFG 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T+ +VE ++A+E A I+LT G PL + A + + + E SR Sbjct: 183 ISYSGCTREIVEALEVAKEAGATTISLTKFGQFPLVKVADINLFVSSEEPLFRSGATASR 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +AQLTVID+L R+ L+ EAL + K Sbjct: 243 IAQLTVIDILFILVAKRKYNDVVKFLENTTEALSIRKIYK 282 >UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulator TTE0211 n=3 Tax=Clostridia RepID=Y211_THETN Length = 282 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 1/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L I+ + SE K+A+ IL +P S+ +A + SE ++ RFCR++ + Sbjct: 3 DVLAVIREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGLK 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ +A SLA T ++ + +D V + KI +D L+ + +A Sbjct: 63 GFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A KI F+G+ +S VA+DAM KF R N+P D LQ S +N GDV Sbjct: 123 AEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAFG 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G TK +VE Q A+E A I+LT G +PLA+ A + + + E M SR Sbjct: 183 ISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMFRAGAMASR 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 +AQLTVID+L ++ L+ E L + + Sbjct: 243 IAQLTVIDILFILVAQKKYNDVVRYLENTSEVLSMRKIN 281 >UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYI4_9GAMM Length = 278 Score = 275 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 116/277 (41%), Positives = 170/277 (61%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L + L SKS K+A ++A+P+ + S+ A++A +A VSEPTVNRFC + Sbjct: 1 MTLLTDLADPLSKRSKSAHKIAACVVANPEAILASTTASLAAQAGVSEPTVNRFCTGLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GFPDFKL LA LA P + R+++ DDS KIFES A+L + + LD +A+ Sbjct: 61 KGFPDFKLSLAAELARKQPRMTRDIDPDDSAAKVAAKIFESTQASLSNTQDHLDLAALQD 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V ++ A+ IA GLG+SA+VA DA +K RF +P++ DI+ QR+ D+++ Sbjct: 121 VVAAMSNARSIALCGLGASASVALDAQHKLLRFPIPIMAHTDIINQRVVAAGLGADDLLI 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS+TGRT ++ELA+LA V +TS +PLA L + ++ EDTD Y PM SR Sbjct: 181 CISYTGRTTAMIELAELAVSRGCQVAGITSPHSPLANTCPLVLGVESGEDTDRYTPMTSR 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL +ID+LAT L +G F D+L+ VK L ++R Sbjct: 241 IAQLVIIDILATCLALEQGEAFADHLQEVKRNLSQTR 277 >UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=Bacillales RepID=C4L752_EXISA Length = 282 Score = 274 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 158/279 (56%), Gaps = 1/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN +I+ LSK E+++A+ IL P+ IH +I +A + +V+E TV RFC+ + Sbjct: 4 MNGTARIRGAYSTLSKKEQRIADYILKQPEQIIHHTINQVADDLDVAESTVFRFCQRVGF 63 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +G+ K+ LA + ++ ++ E D+ KIF + T++ R L+ ++ + Sbjct: 64 KGYQALKIALASDVVAPLQDIHEDITETDTALEIAEKIFSTNGKTIESTRQILEGVSLEK 123 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+L A++I FFG G SA VA DA +KF R + V + +Q MS + DV V Sbjct: 124 AVELFLGARRIEFFGSGGSAVVALDAYHKFVRSGLQVSAMLESHMQLMSASQLTTADVAV 183 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +ISH+G +K +++A+L +E +IA+T+ A +PL++ A +++ E + S Sbjct: 184 VISHSGASKETLDIAKLLKEKGVPMIAITNYAKSPLSKIADVSLYTVSQETAFRSEALAS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+A+L++ID L T +RRG R +L++++EA+ R Sbjct: 244 RIAELSLIDALFTAVMMRRGEAARTSLQQMREAISMRRI 282 >UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator n=24 Tax=Neisseria RepID=A9M040_NEIM0 Length = 282 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 117/278 (42%), Positives = 170/278 (61%), Gaps = 1/278 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML KI L +LS +ERKVAE LA P +H+++A +A A+VS+PTV RFCRS+ +G Sbjct: 1 MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKG 60 Query: 63 FPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 P+FKL L+ S+ G PYV+ +N DD + S K+ +A A+L R L +S + A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A+++ F+G+G+S VA DA +KFFRF + V D Q M+ SD DV+V Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG + L++ +A+EN A VIALT +PLA+ A +++ E+ ++Y PMVSRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLADCVLSVATQENAELYTPMVSRL 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 QL VID+LA G LR G L++ K+++ D Sbjct: 241 LQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKHID 278 >UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=Actinomycetales RepID=C7MQM6_SACVD Length = 333 Score = 273 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 5/282 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L +I+S L L+++E++VA+V+L P + SI +A+ A SE TV RFC+++ Sbjct: 38 SPLVRIRSLLPGLARAEQRVAKVVLEDPSSVARRSITEVAMAAKTSETTVTRFCKAIGVG 97 Query: 62 GFPDFKLHLAQSLANGTPYVNRN----VNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P ++ LA A +R+ + DD + S K+ + ++ LD + Sbjct: 98 GYPQLRIALAADTARTEAKSSRDLGGDITADDDLASVVSKVSFADARAVEETAEQLDIAE 157 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + R +LL +A ++ +G+G+SA VA D K R D + S S+GD Sbjct: 158 LTRVTELLAEATRVDVYGVGASAFVAADLQQKLHRIGRVSFAWSDTHIMLTSAAVLSEGD 217 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V V ISH+G T + VE ++A+E+ A +A+T+ +P+A A +T E T Sbjct: 218 VAVAISHSGATTDTVEALRVAKEHGATTVAITNFPRSPIASVADHVLTTAARETTFRSGA 277 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+AQLTVID L G RR + L+ +EA+ R Sbjct: 278 TASRIAQLTVIDCLFIGVAQRRMDESMAALEATREAVNGHRL 319 >UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID=A0Z4E2_9GAMM Length = 291 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 128/277 (46%), Positives = 185/277 (66%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +IQ+ L LSKS+ K+A V+LA P+ A H+SIA +A +ANVSEP+VNRFC+ + Sbjct: 6 NVLTQIQAALPGLSKSDTKIAHVVLADPEAATHASIALLAQQANVSEPSVNRFCKRLGAT 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+PDFK+ LA+SL G Y+++ V+ +D+V +Y GK+ ++ + L R L + A Sbjct: 66 GYPDFKIWLARSLVAGVRYISQVVDPEDTVTTYPGKLVDNTVNALLLAREQLPLKTLEVA 125 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ L A +I FFG+G+SAAVA DA +KFFRF PV D ++ RM S GDV V Sbjct: 126 VEHLDAAGRIYFFGMGTSAAVAQDAEHKFFRFQTPVTTHTDPLMLRMLAAGGSQGDVFVF 185 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISHTGRT+ +V+ A LA + A VI+LT+ +PLA+ + I L+ PE+T+ Y+PM SR+ Sbjct: 186 ISHTGRTEAIVDAAALASASGATVISLTAQDSPLAQVSHCVIGLEAPENTEDYLPMTSRI 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L +ID+L TG TL+RG ++L R+KE+L +R Sbjct: 246 VHLVIIDILVTGVTLKRGEPCIEHLARIKESLLPTRL 282 >UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJF9_BREBN Length = 297 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 147/278 (52%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L IQS L +KSE+KVA ++L D+ I+SS+ +A +A V E TV RFCR + Sbjct: 20 NTLLHIQSLLPSFTKSEQKVAHIVLQQTDSVIYSSVIDLAEKAGVGETTVLRFCRKIGFH 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FKL LAQ L N ++ V EDDS++ T K+ + + + R Sbjct: 80 GYQEFKLALAQELVNPVKNLHGEVGEDDSLDIITHKVTATNQQAIGDTSALFQLEQLERC 139 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VDLL +A I F+G+G+SA A DA F R + V ++ LQ M+ GDV + Sbjct: 140 VDLLQKANTIHFYGVGTSAVTAQDAKYTFLRIGLRVDAFNESHLQAMAAATLGPGDVAIG 199 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G TK+ ++ ++A++ A I LT +P+ A + + E + ++ Sbjct: 200 LSVSGSTKDTIDSLKVAKQAGAACICLTHYRRSPITNVADITLLTAAQEGPLQGGSLAAK 259 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL V+DV++T T+R K +R +A+ E ++ Sbjct: 260 IAQLHVLDVISTTITMRNKEKALLYKERTAKAVLERKY 297 >UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TJ91_CLOBB Length = 285 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 1/276 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 LE+I + L +E+KVA+ +L +P N IH SI +A + SE TV R C + +G+ Sbjct: 10 LERITNIYSELKGAEKKVAQYVLENPKNIIHFSITELAEVSKASEATVFRLCSKLGYKGY 69 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K++LA S+ + V E+D KI S + +++ +++A+ Sbjct: 70 QDLKINLAGSVIEPIDNIYEEVKENDDTYIIMRKIMSSNINSIESTLKINKTEDLDKAIA 129 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 ++ AKKI FFG+G S +A+DA +KF R + V S D Q M + GD ++ S Sbjct: 130 IILNAKKIMFFGMGGSWTIANDAYHKFIRTGIDCVASCDSHWQVMFSSMANSGDAIIAFS 189 Query: 184 HTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 ++G K LVE LA++ +IA+T + +PLA+ + L + E M SRL Sbjct: 190 NSGSNKELVENINLAKKRGIKIIAITGNEKSPLAKISDLHLIAYGNESMFRSEAMESRLT 249 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L ++D L G ++R K NL+R++ + RF Sbjct: 250 SLMIVDWLYVGVAIKRKDKTLGNLERIRNGIASKRF 285 >UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788119 Length = 278 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 131/272 (48%), Gaps = 1/272 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +++ + L+ SERKVA IL P I S+A +A+ + S+ + R C++M +G+ Sbjct: 5 LVRLREVYDSLNPSERKVAAFILQEPAEMIQMSVADLAVRSGSSQAAIVRLCKTMGFKGY 64 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D KL +A L +++ +DS+ + + + + ++ +++ + AV Sbjct: 65 QDLKLKVAGDLQEPLATGYQDIRPNDSISAIIQNVSNNNIQSIRDTMKIMEEGMVEEAVL 124 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L Q+K+I FG+G+S + DA KF R N + D +Q S + + D V IS Sbjct: 125 ALDQSKRIFMFGVGASNLIGMDAQQKFLRINKVCISFPDPHVQLTSAVLLTPDDAAVCIS 184 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLA 242 ++G T ++ A +A+E I +T G + L+R + + E+ M SR+ Sbjct: 185 YSGETDEVIRAAAIAKEKGCKTIGITKYGDSTLSRSVDIPLYTSSTENEIRSGAMSSRIT 244 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 QL +ID+L G R L + A+K Sbjct: 245 QLNLIDILYLGVASRNYENSVKYLDESRRAIK 276 >UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C6WFA6_ACTMD Length = 304 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 5/282 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L KI+S L L+++E++VA+V+L +P H SI +A A SE TV RFC+++ Sbjct: 9 SPLVKIRSLLPGLARAEQRVAKVVLDNPATVAHRSITEVAESAGTSETTVTRFCKAIGVG 68 Query: 62 GFPDFKLHLAQSLANGTPY----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P+ ++ LA A + ++ D + GK+ + ++ L+ Sbjct: 69 GYPELRIALAADTARTAARTDRDLGGDIGPGDDLRQVVGKVAFADARAVEETAEQLNVDT 128 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + VD + +A ++ +G G+SA VA D K R +D + S + D Sbjct: 129 LQAVVDAVARAGRVDVYGFGASAFVAFDLQQKLHRIGRTCFAWNDTHIALTSAAVLTGAD 188 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V V ISHTG T VE ++ARE A +ALT+ +P++ A +T E T Sbjct: 189 VAVGISHTGSTTETVEALRVARERGATTVALTNFPRSPISEVADHVLTTAARETTFRSGA 248 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 M SR+AQLTV+D L G L+ +A+ R Sbjct: 249 MASRIAQLTVVDCLFIGVAQHHVESATSALEATYDAVAGHRL 290 >UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=A6UCC0_SINMW Length = 296 Score = 270 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 116/280 (41%), Positives = 167/280 (59%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+LE I+ + L KS+RKVAE++LA P I+++IA A A VS+PTV RFC S+ + Sbjct: 16 NILEVIRLRRADLRKSDRKVAELVLADPKRVINATIAEAAEWAGVSQPTVIRFCASIGCQ 75 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DFKL LAQSLA G + ++ D+ + KIF+ + +LD VR+ LD ++RA Sbjct: 76 GYQDFKLRLAQSLALGMSATHSVIDASDTPAQVSAKIFDYTITSLDWVRNHLDPVQVSRA 135 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D L++A +I FFG G+S VA DA KF F VP D Q M GDV V+ Sbjct: 136 IDALSKASRIEFFGFGASGIVARDAQQKFPLFGVPCGAETDAHQQIMVVSMLKPGDVAVV 195 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG T ++E A+ ARE+ VI + + PL + + ++ E+T+IY P +SR+ Sbjct: 196 ISNTGATLAIIETARRARESGCQVIGIVGSDGPLVEFCDIVLMVETLENTNIYTPTISRI 255 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 A LTVID+L+T LRRGA+ D +K L+ R + Sbjct: 256 AALTVIDILSTSVALRRGAEHVDLFTGMKRNLRYLRMSNE 295 >UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseriaceae RepID=D0W145_NEICI Length = 315 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 113/271 (41%), Positives = 166/271 (61%), Gaps = 1/271 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML KI L LS +ERKVAE LA P +H+++A +A ++VS+PTV RFCRS+ +G Sbjct: 1 MLSKISESLADLSGAERKVAECALAKPKWFVHAAVAEIAEHSSVSQPTVIRFCRSLGYKG 60 Query: 63 FPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 P+FKL L+ S+ G PYV+ +N DD + S K+ +A A+L R L +S + A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMSSVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A+++ F+G+G+S VA DA +KFFRF + V D Q M+ S DV++ Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSSEDVLIA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG + L++ +A+EN A +IALT +PLA+ A +++ E+ ++Y PMVSRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASIIALTRNESPLAQMADCVLSIATQENAELYTPMVSRL 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 QL VID+LA G LR G L++ K+A Sbjct: 241 LQLAVIDILAIGLALRLGDAASLQLQKSKKA 271 >UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=Burkholderia RepID=Q13K65_BURXL Length = 287 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 107/276 (38%), Positives = 159/276 (57%), Gaps = 1/276 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ I+S L +L +ERKVA+++L+ D A+ +SI +A A VSEP+V RFCR++ Sbjct: 5 NLIPHIRSALANLRPAERKVADMVLSDVDFAMRASITELAQRAEVSEPSVTRFCRAIGAH 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFK+ LAQS+A G PY + V DD V++ K+ E+A+ + H R +LD + + A Sbjct: 65 GLRDFKMQLAQSVAGGVPYASTAVARDDDVQTLMDKVGEAAIGGITHARGALDPAVVESA 124 Query: 122 VDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+ A+++ FFG+GS S VA DA +F R ++ D LQR+ GDV Sbjct: 125 IAALSSARRVFFFGVGSGSGLVAQDAALRFLRLDIASTAFTDGHLQRLYAGLMEPGDVAF 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+GR+ + E Q+A+E A IALT+ G+ LA + + L VP D P VSR Sbjct: 185 AISHSGRSVEVNESIQIAKERGATTIALTNVGSRLAWLVDIPLLLRVPSPIDPNTPGVSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 L L ++D LA G L+ G K + ++ K L Sbjct: 245 LVHLCIMDALAIGVALKAGPKTLEKMRHAKARLASH 280 >UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Actinomycetales RepID=A4F6M8_SACEN Length = 308 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 4/281 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L +I+S L L+++E++VA ++LA P + SI +A A SE TV RFC+++ Sbjct: 14 SPLIRIRSLLPGLARAEQRVANIVLADPASVARRSITEVAEAAGTSETTVTRFCKAIGVG 73 Query: 62 GFPDFKLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+PD ++ LA A + + ++ +D V K+ + ++ LD + Sbjct: 74 GYPDLRIALAADTARTSSRDRDLGSDIGPEDDVRKIIEKVSYADAKAVEETADQLDAETL 133 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 VD + +A++I +G+G+SA VA D K R + D S +GDV Sbjct: 134 RSLVDAVARARRIDVYGVGASAFVALDLQQKLHRIGLTCFAWSDTHNALTSAAVLREGDV 193 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 + ISHTG T VE Q A + A ALT+ A +P+ A +T V E T M Sbjct: 194 AIGISHTGATTETVEALQEAGKRGATTAALTNFARSPITEVADHVLTTAVRETTYRSGAM 253 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+ QLTVID L G R + + L+ EA+ R Sbjct: 254 ASRIGQLTVIDCLFIGVAQRHLDQTKAALEATYEAVGAHRL 294 >UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSK7_9FIRM Length = 282 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 152/278 (54%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + E I+ ++ +L+ +ERK+A +L + D ++S+I +A A VS+ +V RFCRS+ + Sbjct: 5 SCKEIIRGRMNYLTNTERKIANYVLENYDQVLNSNITELAENAKVSDASVVRFCRSLGYK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DFK++ A+ + ++N + E DS + KIF ++ L+ SL+ + +A Sbjct: 65 GYQDFKINAAKDVLPREKHLNPILEESDSPDMICHKIFNLEISVLERTLASLNMREVEKA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + K++ FFG G S V DA++KF + V V +D LQ M+ +GDVV+ Sbjct: 125 AQFIFHGKRVLFFGSGGSLLVGQDALHKFMKIGVQVYVHEDRDLQLMASSLAGEGDVVIG 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G +++ + A+EN A IAL S G TPL++ A + I E + +R Sbjct: 185 ISHSGSNYSVLRCLKNAKENGAQTIALVSRGKTPLSKIADVVIDTASEETIFQSESVSTR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL +ID L + + +++ ++A E++F Sbjct: 245 IAQLAIIDSLVSIVAFMNYDESYRAIQKTRKATSENKF 282 >UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n=51 Tax=Bacillus RepID=A8FJ30_BACP2 Length = 285 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 146/280 (52%), Gaps = 2/280 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++ +EKI++ L + +AE I + P + IH SI +A + SE T+ R C+ + Sbjct: 6 LSSIEKIRAASRGLPPKLKAIAEHITSEPRDIIHLSIVELAKKTASSEATIFRLCKRLGF 65 Query: 61 RGFPDFKLHLAQSLANGTP-YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF D K+ +AQ + P YV+ ++ DD + + K+F++ ++ L L+ + Sbjct: 66 EGFQDLKIAIAQEIDQTKPNYVDEEMSLDDDMAVFMQKVFQTNISALKDSFQLLNPEDVE 125 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A+ ++ +AK++ F+G G S +A DA +KF R + + D Q MS V Sbjct: 126 KAIQIIHEAKRLEFYGSGGSGLIATDAFHKFMRTGINCIVHTDSHFQAMSAGLLDQHSTV 185 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + ISH+GR K+L++ + A+ A I +TS +PL++ A + + E M Sbjct: 186 IGISHSGRNKDLLDAMKTAKSKGAKTIGITSYQRSPLSQLADVTLYTATQETAFRTEAMS 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +RLAQLTVIDVL R + NLK+++E + + R Sbjct: 246 ARLAQLTVIDVLYFALAHLRQQETITNLKQMRETISQKRV 285 >UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C77F Length = 277 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 3/276 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + +I+ L+++E+++A+ I+ P+ + S + + + S V RF + + Sbjct: 1 MSCITRIKEA--SLTETEKEIAQYIIEHPEQVLDDSAMKLGEKTHSSSAAVVRFAKKLGY 58 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GFP K+ LA+ L P V+ ++ D+ + + K+ S + T+D H L S + Sbjct: 59 SGFPQLKIELAKDLVGSIPEVDNLLHPDEDMATLMNKVHHSQIVTIDKTYHLLSASTLED 118 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V L QAK + FG+G SA V D ++K R + D+ LQ S N ++ D+ + Sbjct: 119 VVKALEQAKHVYLFGVGGSAIVCDDFIHKLMRIGKYACFYPDVHLQMTSVPNMTEEDLAI 178 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S++G TK +V A+ A+E + +A+T SA L + +T+ E + M S Sbjct: 179 FVSYSGETKGIVTAAKWAKEMNIPSVAITQSAYNKLGKLVDHVLTIPSQEQSLRIGAMSS 238 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 R + L V+D+L G R K+ + + ++E Sbjct: 239 RYSSLIVVDLLYYGLVKRNKEKYAQKIINTRRIIQE 274 >UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Bacillales RepID=C6J1X3_9BACL Length = 289 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 139/277 (50%), Gaps = 2/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L + S LE LS ERK+ E IL SP IH I +A +S TV RFC++ +G Sbjct: 4 ILHAVSSHLETLSPQERKLGEYILESPATVIHQGITELANACGISPSTVTRFCKTFHFKG 63 Query: 63 FPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FPDFK+ LA LA +++ + ++ + + +A++ LD + ++RA Sbjct: 64 FPDFKMKLASELAHKPAENHYQDIIAGNDLQKIVEAMEANHLASITDTTRLLDMNQLSRA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ L +AK+I +G+ +S+ VA D K R D +Q S + +GDV + Sbjct: 124 VEALCRAKRIDLYGVATSSIVAQDFYQKLVRIGKNCTAFADSHMQITSASSLGEGDVALA 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T ++ + A+++ A ++LT + LA A +A+ E+ M SR Sbjct: 184 ISYSGETPETIDALRCAKDSGATTLSLTQYSSNSLASLADIALFSSSLEEGMRRGDMASR 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL VID+L TG F L+ + ++ R Sbjct: 244 IAQLHVIDILFTGMVSLEFQDFIPKLESSYQNVQIYR 280 >UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulator CA_C0191 n=5 Tax=Clostridia RepID=Y191_CLOAB Length = 283 Score = 265 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 145/278 (52%), Gaps = 3/278 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+ + L+ SERK+AE IL + SI +A ++ S+ V R C+ ++ +G+ Sbjct: 5 LIRIKEIINDLNPSERKIAEYILNNSKAISDLSIKELAGKSGSSKSAVVRLCKILNYKGY 64 Query: 64 PDFKLHLAQSLANGTPYVNR--NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 +F++ +A+ N NR ++N D + + I + ++D+ L + + +A Sbjct: 65 KEFRIAIAKDTVNVDKEENRYTDINPKDDLHTIIKNISYNNKKSIDNTMEVLSEELVEKA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + +++A ++ F+G+G+S VA DA KF R N V + D LQ N GDV V Sbjct: 125 SEAISKAYRVDFYGIGASYIVAMDAFQKFMRINKNVRATPDTHLQVEFASNLKKGDVAVA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS+TG TK+ E + A+E A I++T G+ ++ + + + PE T M SR Sbjct: 185 ISYTGETKDTFESIKAAKEAGATTISVTKFGSNSISDLCDINLFVLSPEITFRSGAMSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL VID+L T R + ++ L+ +++ + R Sbjct: 245 IAQLNVIDILFTSVAGRMFEEVKEFLENTRKSTRVKRI 282 >UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1J5_9FIRM Length = 282 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 1/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 L+ I+ +L L+KSE+K+AE IL P+ + ++I +A S+ ++ RFC+ +G Sbjct: 6 FLQLIEDKLGTLTKSEKKIAEYILEHPNRVVDATITELAERIGTSDASIVRFCKLFGCKG 65 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + +FK+ LA+ + +N + + D+ + KIF + +ATL L+ + Sbjct: 66 YQNFKIRLAREVVPHYKQLNVALEQHDTALTICQKIFNTEIATLHETLEMLNVEHLQTMA 125 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 + +A I FG G S+ VA D +KF + + D +Q MS GDV + I Sbjct: 126 QRIREADYIEVFGSGGSSVVAQDIRHKFLKVGIRCTVLLDADIQAMSASLLKKGDVAIGI 185 Query: 183 SHTGRTKNLVELAQLARENDAMVIAL-TSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG TK++ ++AR+N A VI L T A +P+ R A L I + E +R+ Sbjct: 186 SHTGSTKSVFHCLKMARKNGAYVILLTTQAKSPIGRIADLVIPVGSKETLFKSESTSARI 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 A+L V+D + K+ + + ++A E++F Sbjct: 246 AELVVMDAVLALAVSDDYKKYNVKITKTRDATSENKF 282 >UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7K6_PAESJ Length = 284 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 139/275 (50%), Gaps = 3/275 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I S + +E+K A+ IL D ++ SI +A V E ++ RFC+++ + Sbjct: 5 SITSTIHSHYNRFTATEKKTADYILEHADAVVYMSITDLAEGCGVGEASIFRFCKALGFK 64 Query: 62 GFPDFKLHLAQSLA--NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+ FK+ LA S++ N P ++ V D++E K +S + L+ + +IN Sbjct: 65 GYQQFKIALAHSISADNEIPQLSGQVKIQDTLEDAVSKTLQSNINALNETFKLIQLDSIN 124 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 RA+DLL ++ + F+G+GSS A +A NKF R S D Q MS + DV Sbjct: 125 RAIDLLIRSDRFIFYGVGSSLMTAMEANNKFMRITNKTGCSVDSHQQAMSAALMGERDVA 184 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 ++IS++G TK+ +E+A+ A+E A +I +T +PL + + + E + Sbjct: 185 IIISYSGSTKDSIEVAKKAKERGAAIIVITRFVKSPLTSYSDITLLCGANEGPLQGGSLS 244 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 +++AQL ++DVL + R N + A+ Sbjct: 245 AKIAQLYLLDVLYVEYFKRTYEASIVNKENTSAAV 279 >UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PDB4_BACCO Length = 283 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 147/270 (54%), Gaps = 1/270 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +IQ+ S ERK+A+ IL +P +HS+I +A + V++ TV RFC+ + GF Sbjct: 11 LHRIQTMYSEFSAKERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSGF 70 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 K+ LA A ++ V + D+ ++ K+FES + TL H+L++ ++ AV+ Sbjct: 71 QALKIALAAEAARPGKNMDEAVKDTDNEKAVAIKVFESNIETLQDTIHTLNQKHLHEAVE 130 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 + +AK I F+G GS++ +A DA+ KF + ++ V D LQ +S C+ DV V IS Sbjct: 131 WICRAKHIVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFIS 190 Query: 184 HTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 H G K +++L Q ++ A IA+T A +PL+++A + + E + +R+ Sbjct: 191 HAGADKEMLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPLFTVSQEADFRFSSFSARIV 250 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 QL++ID L LR + L++ KE Sbjct: 251 QLSLIDTLYVNVMLRYKDTNEEILQKGKET 280 >UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWE9_9CLOT Length = 301 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 155/278 (55%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + ++++ + LSK E + AE + A + I+SSI +A A SE TV R C + R Sbjct: 24 TLYDRVEEKRGSLSKKELETAEYMAAHQEQLIYSSITDLAERAGSSEATVTRVCGKLGYR 83 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K+ +A+ L ++ N+ D E KIF SA+ TL + S++ A+ + Sbjct: 84 GFQALKVGVARELTTPQEKIHENLEADSPAEVIIEKIFSSAIETLSMTQKSINVKAVAAS 143 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D L +A++I G G+SA++A DA +KF R ++ D +Q ++ + +D DV++ Sbjct: 144 IDALCRARRIIIIGNGNSASIAADAQHKFLRLDLNAHAYTDDHMQMIAVSSMTDQDVLLA 203 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G ++N+VE A A+E A VI+LT+ G +P+++ A + + E + SR Sbjct: 204 ISYSGSSRNVVEAAHQAKEQGATVISLTNEGSSPVSKLADICLNTYSQETRYRTYAISSR 263 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +A+LT+ID + TG LR G K N + ++ AL ++ Sbjct: 264 MAELTIIDTIYTGVALRLGDKAIANFEALERALVVKKY 301 >UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNZ1_HIRBI Length = 297 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +I+ + + L S +A+ +L + + S+ +A SE +V CR + Sbjct: 20 NVISRIRIRKDSLGPSTSTIADYVLGHANAVVGMSVTELAEATGTSEGSVINLCRQLGLS 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF KL LAQ + +++ ++ D + K+F + L LD AI+ A Sbjct: 80 GFQQLKLSLAQEVVRPVQFIHEDLQPSDDTSTVCQKMFHAGSEALRETLSILDPDAISMA 139 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD++ A ++ +G+GSSA +A DA + R + D +Q +S V+ Sbjct: 140 VDVIRSADRVEIYGIGSSAPIAEDAQYRMLRIGLDAKVVVDSHIQAISASRTGPNVAVLT 199 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G T + +LAR+ A I +T+ A +PL A + + E M SR Sbjct: 200 ISHSGSTHETLAATRLARDAGAKTIIITNFASSPLQAYADVKLYTMARETKFRSEAMTSR 259 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL ++DVL L + L++ E L RF Sbjct: 260 IAQLCILDVLIAALALDDYERATTVLRQTSEVLSIKRF 297 >UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8M2_9ACTN Length = 291 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 142/273 (52%), Gaps = 4/273 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +++ + L+ +E+ VA +L P + S+ A+A + VS V R C+S+ Sbjct: 3 NIIIRLRENIGFLNPAEKAVARYVLQCPHESNRLSVKALAARSFVSPAAVVRMCKSIGFE 62 Query: 62 GFPDFKLHLAQSLANGT---PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF +FK L + LA P +++ ++D++ES KI + +L +D I Sbjct: 63 GFKEFKTELTRELATEKLILPLDTKDIKQNDTLESIIKKITLKNIHSLYDALRLIDPETI 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV+LL +I FGLG+S A DA KF R N + +DD LQ ++ N + DV Sbjct: 123 EKAVELLQACDRILLFGLGASLIAAKDANLKFLRVNKTCLINDDWHLQLITARNSTSQDV 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 ++IS++G+T + A++ + N+ +IA+T +P+++ A + + E M Sbjct: 183 GIVISYSGQTAETLTCAEILKHNNTPIIAITRCIESPISKLADVLLYTTSNESLFRSAAM 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 SR++QL +ID+L T F + K L + + Sbjct: 243 SSRISQLNIIDILYTAFAVSDYEKNFTYLSKTR 275 >UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQA6_9CLOT Length = 290 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 133/279 (47%), Gaps = 1/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M E+IQ+ LS + +K+A+ ++ PD A+H ++ +A VSE +V RFC+ + Sbjct: 12 MGCTERIQATYSALSGASKKIADFVIDHPDQAVHMTVVQLAESCEVSEASVVRFCQCLQY 71 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL LA + + + ++ +D+ + K+F L L++ Sbjct: 72 AGFYEFKLSLAAEIVPASQMIQEDITVEDTEPTILEKVFAGEQQALQETLQMLNRQDFIS 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+ + + K+ FF G++ +A DA + R + D + GDV + Sbjct: 132 AVNHIAFSNKVEFFSCGNARPIAQDAHYRLLRTGIDSRIGIDDYDCLIHASMLRTGDVAI 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+G TKN +++ + A++N A I +T P+ R + + + E M M S Sbjct: 192 GISHSGSTKNTIKMLEEAKKNGATTICITGMEKAPITRVSDICMVSHSKETMFRSMAMAS 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+AQ+ +ID L + +R + + L + L E + Sbjct: 252 RIAQMAIIDALVVAVSFKRFERSKQYLTLTDKILVEDKM 290 >UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIQ0_CLOPH Length = 284 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 143/279 (51%), Gaps = 4/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + +I+S +KSE+ VA+ + +P+ +++SI +A V + TV RFC+++ Sbjct: 4 GIFARIESSYSKFTKSEKIVADFVFENPEKVLYTSITDLAEICGVGDTTVFRFCKALKLN 63 Query: 62 GFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ +FK+ LAQ +A +N +V++DD +++ K +A L L+ A+ Sbjct: 64 GYQEFKMFLAQDIAVRTGSDYTINGSVSQDDDIQTICKKALAVDIAALTETFEGLNFEAV 123 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + VD+++ A K+ FFG+GSS +A +A KF R V + D +Q MS S D+ Sbjct: 124 TKVVDMISNANKVQFFGMGSSGVIALEAKMKFMRILPNVEHIADCHMQFMSAALLSSRDL 183 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 ++ S++G TK+ +E+A LA+ N V+++T + LA + + I E Sbjct: 184 AIIFSYSGSTKDSIEIANLAKSNGCKVVSITRYVNSHLANISDVVIPCGSNEGPLDGGAS 243 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + + Q ++D+L + + + + N + E++ Sbjct: 244 STSMVQFYILDILYLLYFTKHYHQSKLNKAKTTESISSK 282 >UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI47_9CLOT Length = 285 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 147/275 (53%), Gaps = 2/275 (0%) Query: 6 KIQSQLEHLSK-SERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 ++QS L ++K +E K+ E I + IH S+A A VSE + R+ + + +G+ Sbjct: 11 RVQSILPSINKKNEMKIYEFIEINRKEIIHMSVADAAEACGVSEAAIVRYAQKLGYKGYQ 70 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 K+ +AQ + + +++ D++ + KIF+S + +L L + I+ AV+L Sbjct: 71 AMKISIAQDVIEPGQQIYGQLSKGDTIPTIVDKIFDSNIQSLRDTSDVLSRENIDEAVNL 130 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + +++ FFG+G S VA D +KF + + D LQ M+ + DV+V +SH Sbjct: 131 ILGCRRLLFFGVGGSGCVAMDGQHKFLKIGYMAMAFTDSNLQAMAASVLTSRDVLVAVSH 190 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G +K+++ +A+++ A IA+T+ G +P+ +A + + E + SR+A+ Sbjct: 191 SGASKDILMAMDIAKQSGAKTIAITNYGKSPIVEKADVVLYTSSNETAFNSDALSSRIAE 250 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 LT+ID+L G + +R + N+ + ++AL ++ Sbjct: 251 LTIIDMLYIGVSYKRYDESYANILKTRKALDSTKI 285 >UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9W4_9FIRM Length = 280 Score = 257 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 149/276 (53%), Gaps = 3/276 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +Q L+++E+K+A+ + + + SI +A E +V++ +V+RFCR++ + Sbjct: 5 NVLLSMQLSYNQLTRTEKKIADYVQKNAQKVLFMSITELAEECHVADASVHRFCRTIGAK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FK+ L+ ++ + + ++ +S + ++ LDK +++A Sbjct: 65 GYQEFKMWLSINMGHEKGEEESEEEDGKEP--IFQQVLKSHLEAINETNQLLDKEKVDQA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V +LT+A++I FFG+G S A +A NKF V+ + D LQ M+ ++ D++ + Sbjct: 123 VRMLTEARQIMFFGVGDSKTAAIEANNKFLHVTPKVMCAGDTHLQAMAASMMTEEDLLFV 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S++G TK+ VE+AQ+A+E A VI++T +PL + + E M ++ Sbjct: 183 VSYSGSTKDTVEVAQIAKEAGAKVISITRFLKSPLTEFSDCVLICGSKEGPLEGGSMGAK 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 L+QL +ID+L + G K R+N ++ A+ Sbjct: 243 LSQLHIIDILYQCYFKANGKKARENRQKTANAVVNK 278 >UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7S3_BREBN Length = 288 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 147/273 (53%), Gaps = 2/273 (0%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 +Q+ L+ L SERKVA+ ILA P++ + S+ +A + VSE T+ R RS++ +G+ + Sbjct: 12 LQAILDQLKPSERKVADYILAHPEDVVKLSVQKLAEYSGVSEATIIRLARSLNMKGYQEL 71 Query: 67 KLHLAQSLANGTPY-VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 KL +A L T + + + SVES + + + ++ L + +AVD+L Sbjct: 72 KLRVAGDLTKQTARGSYQEIMMEGSVESIMQAVSWNNIQSIQDTLSVLSNEEVKKAVDVL 131 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 + A+KI +G+G+SA +A D KF R N+ D Q S + ++ DVV+ IS++ Sbjct: 132 SVARKIDVYGVGASAVIADDIRQKFSRINLWCEAYSDFHAQLTSAVTLTEKDVVIGISYS 191 Query: 186 GRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G+T+++++ A++ A +I LT G +P+A A + + E + M SR+AQL Sbjct: 192 GQTEDIIQSLTEAKQQGATIITLTKFGPSPVAELANIRLFTSSVEKSIRSGAMASRIAQL 251 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 VID+L R + L++ + A+ ++ Sbjct: 252 NVIDILFITMISRMQERVIPLLEKSRLAVSRTK 284 >UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n=4 Tax=Firmicutes RepID=A8FIY5_BACP2 Length = 286 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 149/278 (53%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ I++ LS +++K+A IL +P + SI+A+A E N SE T+ RF R + Sbjct: 8 NIFSHIRTTFHSLSPTQKKIANYILENPQKVVLHSISALASECNTSETTIFRFLRKIGYE 67 Query: 62 GFPDFKLHLAQSLANGTP-YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + F++H+AQ +A TP + + DSV K+ E ++ ++H ++ A+ + Sbjct: 68 SYQVFRVHVAQDIATNTPQSIYGEIEASDSVADIKHKVIELTTNSIQDMKHIVEDHAVTQ 127 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ + QA K FFG G+S+ +A DA +KF + V D + M + ++ D +V Sbjct: 128 FIEQMKQAHKTVFFGAGASSFIAGDAYHKFLQLGFDVSLCSDPHMMNMIATHATEHDFIV 187 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+G ++ +++ Q A+E A + ++TS + LA+ + + E T M+S Sbjct: 188 AISHSGESREILDAVQFAKEKGAKIASITSYPKSELAKRSDFHLLSSSRETTYRSDSMIS 247 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R+ QL +IDVL L G+ +N+KR + A+ +++ Sbjct: 248 RINQLVIIDVLYVAAVLELGSNAIENVKRSRLAVAKNK 285 >UniRef50_D2AR91 Putative transcriptional regulator, RpiR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AR91_STRRD Length = 299 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 127/287 (44%), Gaps = 3/287 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N++ +++ L L+ + + +A +IL P S+I + + SE T+ R R++ Sbjct: 10 VNLVATVRAVLPSLTPAAQAIARLILDDPGMVARSTITEFSAVSGTSEATIVRTARALGF 69 Query: 61 RGFPDFKLHLAQSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + LA ++A P V ++ DD + K+ + L L+ + Sbjct: 70 AGYSQLRFALAAAVAREEPERLVPGDLGPDDPLTDVIAKVTRAESEALADTAAQLNPDRL 129 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 V+ +T A+++ +G+G+S VA D K R D L S +GDV Sbjct: 130 GAVVEAMTAARRVDVYGVGASGLVAADMAQKLMRIGRSSHAFTDAHLALTSAALLGEGDV 189 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 V +S TG T +++ ++AR+ A +A+T + + LA A + E + Sbjct: 190 TVGVSCTGETPDVIAPMRVARKAGATTVAITNNPRSSLAELAEHVLVSAGRETAFRPGAL 249 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 SR++QL ++D + G R L+ + AL E D + N Sbjct: 250 ASRISQLLIVDCIFVGIAQRTFETSDAALRATRGALDEFMADTRRRN 296 >UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=Oxalobacteraceae RepID=A6T0F7_JANMA Length = 286 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 113/280 (40%), Positives = 166/280 (59%), Gaps = 2/280 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ I++Q + LSKSE+KVA +L P+ AI +I A+A +A VSEPTV RFCR++ G Sbjct: 2 LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + FKL LAQ LA + + +D K+ ++ TL +R+SLD +AI +A+ Sbjct: 62 WQAFKLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQAL 121 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +L +A I F+G G+S +A DA +KFFR VP V D + ++ GDVVV I Sbjct: 122 QVLGRANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAI 181 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S G + +L+ QLAR + A ++ L +GTPLA AT+ I +D+ TD Y P+ +RLA Sbjct: 182 SQRGSSLSLLRSVQLARSSGAAIVVLAPSGTPLAELATVLIPIDLHFHTDPYTPISARLA 241 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 L VID+LA G LR + R + ++AL+ +FD Q Sbjct: 242 HLVVIDILAVGLALRLSPERRKKMLNAQKALQ--KFDLQF 279 >UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=Clostridium RepID=A7GD47_CLOBL Length = 281 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L +I+ + ++KSE+K+AE I SP + I S +A++ + S ++ RF + + Sbjct: 1 MGVLLRIRENFDSMTKSEKKIAEYIFKSPKDIISDSAQEIAIKTSTSPASIIRFTKKVGY 60 Query: 61 RGFPDFKLHL-AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +FK L A+ + + +N +DS++S K+ + T++ + +D + Sbjct: 61 NSLNEFKFALVAEEYTKESTEFDYIINYNDSIDSIINKLGNKVIDTINDTKELVDDEKLL 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV + A+ I +G+G+SA VA D K R N V++ D LQ ++ ++ DV Sbjct: 121 EAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDVA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 V IS++G T+ + + A++N A IA+T G + L+ A + + + E + Sbjct: 181 VAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR +QL V D L G K NL + ++ + Sbjct: 241 SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLK 279 >UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J4B4_9BACL Length = 288 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 139/279 (49%), Gaps = 4/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L KI+ E+L+ ER VAE ILA+ ++ H SI ++A + S+ +V RFC++M Sbjct: 7 NILIKIRDMKENLTPVERMVAEYILANTEDIPHLSIKSLAKLSKTSDASVLRFCKTMGYS 66 Query: 62 GFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ F + ++ +L + ++ D +++ I + M +++ LD+ + Sbjct: 67 GYRSFIVSISAALGSMDDERKDQYTDIQPGDDLDTIIANISRNNMKSIEDTLSVLDRGEV 126 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RAV L + +I FFG+G+S V D KF R N D Q + GDV Sbjct: 127 ARAVKALRASNRIVFFGIGASGLVCQDGEQKFSRINKMCHSYTDGHSQLTAATLLGKGDV 186 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 + +S++G T ++E ++A++N+A +A+T + LA +A + + + PE T M Sbjct: 187 AIFVSNSGNTLEIIETLEIAKKNNATTVAITKYNKSELADKADILLGISTPEITMRSGAM 246 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 SR+A LT+ID+L G + L + L Sbjct: 247 GSRIAMLTIIDMLFAGVASAEYQNVKKYLTKTHSILAAK 285 >UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator n=2 Tax=Enterococcus casseliflavus RepID=C9AZQ1_ENTCA Length = 283 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 151/279 (54%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++ +I++ + LS E+ +A+ IL +P HSSI+ ++ E +++ T +F + + Sbjct: 3 VSIRLQIKTLYKDLSLKEQAIADYILENPSKVSHSSISDLSNELGIADSTFFQFTKKLGY 62 Query: 61 RGFPDFKLH-LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF DFK+ L Q ++ N+ + D+ + K+F+S M TL ++ L + + Sbjct: 63 NGFKDFKMAMLMQENDFSAISIHENIQKSDNELTMAQKVFDSNMTTLTDTKNLLKEEDLK 122 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A ++ Q+K++ FFG+G S VA DA +KF R + V +S D +Q M + D Sbjct: 123 LAAAMINQSKRLFFFGVGGSEIVATDAYHKFLRSPITVFHSSDYHIQLMEASLLTPDDCG 182 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 + ISHTG+++ +ELAQ+A+ N A +I +TS A +PLA+ + E + Sbjct: 183 IFISHTGKSRETIELAQVAKNNGAKIIVITSHAASPLAKLGDVVFISISEETEFRSEALA 242 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR+AQL+++D L K + ++ +++ ++ + + Sbjct: 243 SRIAQLSIMDSLYVILMFINRDKAQQSIAKIRRSISKIK 281 >UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=Firmicutes RepID=A6LVH8_CLOB8 Length = 282 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 148/279 (53%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++ KI+S LS E+ +A+ IL +P + H+SI+ ++ E NV++ T+ +F + + Sbjct: 3 VSVRLKIKSLYNGLSAKEQNIADYILENPISVAHNSISYLSDELNVADSTLFQFAKKLGY 62 Query: 61 RGFPDFKLH-LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF +FK+ L + T ++ + DD+ + K+F+S + TL + + L + Sbjct: 63 SGFKEFKMAILIEENNFSTTSIHEKIEIDDNELTMAQKVFDSNIKTLTNTKKILGLDDLK 122 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A ++++ + + FFG+G S +A DA +KF R V +S D +Q M + D Sbjct: 123 KAAEIISNSNLLYFFGVGGSGILAEDAYHKFLRSPAHVRHSTDYHIQLMEASLLTPQDCA 182 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 + ISHTG++K + +A++ +E A VI +TS A +PLA+ + E + Sbjct: 183 ICISHTGKSKETIRIAEIVKEAGAKVIVITSHASSPLAKIGDVVFISISEEIEFHSEALS 242 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR++QL+++D L K ++ L +V+ + + + Sbjct: 243 SRISQLSILDSLYVILMFMNKEKSKEALSKVRRTIWDVK 281 >UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIM2_KOSOT Length = 283 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 137/275 (49%), Gaps = 1/275 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I++ + +K+E+K+A ++ +P ++ S+ ++ VSE ++ RFC+ + Sbjct: 6 NVLLTIETLKDSFTKTEKKIATFVVKNPQKVVYMSLTEVSDILKVSEGSIVRFCQKLGYT 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF FK+ LA S + + + S + + + + + + + + Sbjct: 66 GFHPFKIALAVSENQESFSSSEFDFNSRDLSSLKNYVAQRHIDVIKNTSEFISEEILEAC 125 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ + A+ I G+G+S AHDA KF R + S D +Q M +GDV++ Sbjct: 126 VEKILTARTILISGVGASGNTAHDAFYKFMRIGLNCKTSHDAHIQAMIASELREGDVLLA 185 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G T +V++A +AR+ A VIA+T A +PLAR A + E + S+ Sbjct: 186 ISQSGSTLEIVDIADIARKGGATVIAITGYARSPLARFAHHVLLTPTRESPFESGALRSK 245 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 +AQL V+++L T R K R ++R +++ + Sbjct: 246 IAQLYVLELLFTAVFHRMEEKGRKFIERTADSVAK 280 >UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SX74_9RHIZ Length = 314 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 156/288 (54%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ L ++ER+VA+V+L A+ +S AA+A A VSEPTV RFCR++ Sbjct: 27 DIISLVKDSYSELRRAERRVADVVLDDVKYAVDASNAALAQRAGVSEPTVTRFCRAIGCE 86 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDD-SVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G DFKL LAQSL G Y+ ++ + + +F A L LD + + Sbjct: 87 GLRDFKLKLAQSLVVGALYLAKSPAPGSGNGMPFWNAVFGEARRALQEAERQLDPVELQK 146 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A +L+ +A+++ FGLG SS+A+A + + FR+ + V D L RM+ GD+V Sbjct: 147 AAELIAKARQVTVFGLGGSSSALAQETQYRLFRYGITVNAQCDPYLMRMTASTLKPGDLV 206 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + IS TGRT+ ++E +LA+ A I +T+ T LAR + + + VPE D P S Sbjct: 207 IAISATGRTREVIEAVELAKHYRANAIGVTAPDTELARACDVRLAVAVPEYPDTLKPTAS 266 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R A L +ID+LA + A R+ ++R+K + R K++ L D Sbjct: 267 RYAFLAMIDLLAVASAYKLDASARETVRRIKYNAQIHRTGKEMEPLGD 314 >UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A8S9N1_9FIRM Length = 321 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 132/272 (48%), Gaps = 4/272 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++ LS +ER++A+ IL +PD +I +A + S +V R CR + + Sbjct: 36 NVLLRLREVQPSLSSTERQIAQFILENPDETTTLTIRDLARRSFSSPSSVVRICRVIGFQ 95 Query: 62 GFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + + L LA + +++ DS++ K+ + +L + L + Sbjct: 96 GYKELRHALTLELATLGENGSHREKDITPQDSLQEIVDKVTHKNIQSLLDTQRLLLLDEL 155 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + V+L+ A+ + FG+GSS VA D KF R + P V ++D Q + N + DV Sbjct: 156 EQCVELIANARTVLLFGIGSSLCVAKDTYLKFLRLDKPCVVNEDSHSQLLQARNATAQDV 215 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 ++ S++G+T +++ + + A VIA+T + +A+ A + + E M Sbjct: 216 GIVFSYSGQTMEMIQCIKEMKAGGAPVIAVTRYYPSEVAQLADHVLYVAANESLFRNGAM 275 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRV 269 SRL+QL V+D+L T + R L + Sbjct: 276 SSRLSQLNVVDILYTAYASRNHEDTMRRLTKT 307 >UniRef50_B9K581 Transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) n=3 Tax=Proteobacteria RepID=B9K581_AGRVS Length = 291 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 1/276 (0%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I+ + L+ E KV + + D + +S+ +A A VSE V + + + GF D Sbjct: 14 RIRMMMPMLTPLEAKVVDTVFGMRDFSEETSLKQIAENAGVSEAMVVKITKKLGFSGFRD 73 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 F+ ++Q T +++ ++ DD+ K+F +++ L+ LD +A ++A D++ Sbjct: 74 FRSSVSQYNRQPTTEMHQELSVDDTSLEIVQKVFRTSIHALEETLAILDMAAFDQAADMI 133 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 +A+ F+G+G SA +A D +KF R V DD + MS +D DV + SH+ Sbjct: 134 HKARNRDFYGVGGSAQIARDVAHKFLRIGVRASVFDDSHMMLMSAALLADTDVAIGFSHS 193 Query: 186 GRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T ++E QLAR+N A IA+T+ G+ LA+ A + + + +R+AQL Sbjct: 194 GNTIAVIEALQLARKNGASTIAVTNYGSSALAQSADVVLCSTAQGSPLMGENAAARIAQL 253 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 ++D + R NL R A+ R D+ Sbjct: 254 NILDAIFVAVAQRDYQAAERNLDRTMSAVTSKRRDR 289 >UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=Bacteria RepID=A6LRF3_CLOB8 Length = 294 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 144/285 (50%), Gaps = 9/285 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI++ L SE+KVA+ +L + + ++A ++ + VSEPT+ RF +S+ G+ + Sbjct: 10 KIKNMYNLLRSSEKKVADYVLLNGHSVSTMTLAELSRQVGVSEPTIIRFVKSIGCSGYSE 69 Query: 66 FKLHLAQSLANGTP--------YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 FK+ L + + V +++ D+ +E K+ + L+ +D + Sbjct: 70 FKMALMKEWGRESVDKQYDSKLLVELHIDRDEKIEDVPVKMIGLTIKALEDTLKIIDINK 129 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +A++++ + I +G+G+S +VA D NKF R + D +Q++ + + D Sbjct: 130 YKKAIEMIRSSNIIDVYGVGNSGSVASDIRNKFLRIGLECRAYSDSNIQQICASHLTSND 189 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMP 236 + + +SH+G T + V ++A+E+ A IALT+ P ++ A + E T Sbjct: 190 LAIGVSHSGSTIDTVNALKIAKESGARTIALTNFKAPAISEYADITFFTGGEETTFYSET 249 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 MVSR++QL ++D+L G L + L+++ LKE + K+ Sbjct: 250 MVSRISQLAIVDMLYMGILLDDYDLYTKRLEKINLLLKEKNYTKK 294 >UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4LA29_STAHJ Length = 283 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 3/278 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L I+S L L+ SER+VAE IL PD I+ S+ +A NVS TV R + + +GF Sbjct: 5 LIIIESSLSDLNPSERRVAEYILEHPDEIINYSVQKLADLTNVSVATVVRLSKKLKCKGF 64 Query: 64 PDFKLHLAQSLANG--TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 D KL +A L +++D S+E T +F + TL L I A Sbjct: 65 QDLKLKIAYDLNEPGNIQRGYAEIDKDYSIEEVTQTVFHNNTKTLRDTERILSTENIKHA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +L+ ++K +G+G+SA +A D K R + Q N S DVV+ Sbjct: 125 FELIVNSRKTCIYGIGASALIAQDFKQKLTRIDYWCDVGSSFDEQVTLSANLSSEDVVIA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G+TK++V QLA+E A VI++T G P++ + + + + E M SR Sbjct: 185 ISSSGQTKDIVNSTQLAKEKGAKVISITKYGDNPISNLSDVQLFVSSSEKAKRSGAMSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +A L++ID+L R L+ ++A+K ++F Sbjct: 245 IAMLSIIDILYICIASNDYLSNRQKLENTRKAIKNNKF 282 >UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I8T9_9ACTO Length = 312 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 7/282 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+++L L+ S RKV E+IL P H S A + S+ TV RFCR++ Sbjct: 23 DVTTLIRTELPRLAGSLRKVGELILEDPAAVTHCSAAELGRRTGTSQATVTRFCRAIGLE 82 Query: 62 GFPDFKLHLAQSLANG------TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 + + LAQ G + + +++ DDS+E + + + + +D Sbjct: 83 SYQHLLIELAQERGRGEVSDWGSAEIGPDISPDDSLERVVQVVGSADLRAIQQTIERIDL 142 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 A+ RA L +A++I +G+G S AVA + + FR V ++ S + Sbjct: 143 DALERAAQALAKARRIDVYGVGGSGAVAQETETRLFRIGCQVRGWTEVHGAATSAALLTP 202 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIAL-TSAGTPLAREATLAITLDVPEDTDIY 234 DV + ISH+G T+ +E ++A+E A IA+ T +PLA+ A + + E + Sbjct: 203 ADVAIGISHSGATRETLEPFEMAKERGATTIAITTDPRSPLAKAADIRLISATSETSFRT 262 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + R + L ++D L + +L + Sbjct: 263 GSIGGRHSVLMIVDCLYVRVGQVAYQRASASLALTDHITPQH 304 >UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=Proteobacteria RepID=A1AYM0_PARDP Length = 287 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 1/274 (0%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 +I+ +L L+ E +V + I D + +++ ++ +A VS+ V + + + GF Sbjct: 12 AQIRMKLPFLTPLEARVVDTITGRNDLDLTTALRQVSEDAGVSDAMVVKIAKKLGFNGFR 71 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 DF+ L ++ ++ +DS K+F++++ L+ +D SA +RA L Sbjct: 72 DFREALVVYRQTDVASLHSEISPEDSSADIIRKVFQTSIQALEETMSIIDVSAFDRAATL 131 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 L A++ F+G+G SA +A D +KF R + DD + MS DVVV SH Sbjct: 132 LHGARQRDFYGVGGSAQIARDVAHKFLRIGLRAGVQDDPHMMLMSAALLGPEDVVVAFSH 191 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G T N++E A+LAR+ A VIA+T+ T PL+ A +A+ + +R+AQ Sbjct: 192 SGTTSNVIEAARLARQQGARVIAITNYATAPLSELADIALCSTAQGSPLLGENAAARIAQ 251 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L ++D + R + L R + A+ R Sbjct: 252 LNIMDAIFVAVAQRDLERAEAQLARTRNAVDNKR 285 >UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUK3_9FIRM Length = 280 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 134/278 (48%), Gaps = 3/278 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + KI+S LE ++ +E+ + IL + + + + S RF + M Sbjct: 1 MSCITKIKSALESMTATEQMIGRYILEHRHEVLEMNTLELGWASGTSGAAWTRFAKKMGY 60 Query: 61 RGFPDFKLHLAQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +G P KL LAQ + P V+ ++ D++ + K L +D++ + Sbjct: 61 KGLPALKLDLAQDRTDEEMPEVDLFLDPRDTLGALLHKTQTILEQNLRRTYELIDEAVLA 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A+D++ A ++ G+G S V D ++K R N PV Y D + +C GDVV Sbjct: 121 QAIDMMASAHRLFLCGIGGSGIVCMDLVHKLTRINRPVTYDRDTHVLMAQMAHCMPGDVV 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT--SAGTPLAREATLAITLDVPEDTDIYMPM 237 +++S++G T + ++A LA+E A +IA+T + PLA A + + + E + Sbjct: 181 LVVSYSGNTHTVNQMAYLAKEQGAKIIAITGHNLKAPLASLADVCLFIPRDEKEIRLGSV 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 SR L V D+L G R+ +++L + ++ +++ Sbjct: 241 TSRDGSLIVTDLLYYGVAQRQFHATKEHLVKTRKMIRK 278 >UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=Q2G836_NOVAD Length = 296 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L +I+S L +SK+ K+A ++ P + + SI +A + SE +V FCRS+ Sbjct: 19 NALTRIRSALPQMSKTAAKIAAYVVEHPADVVGMSITDLAALVDASEGSVINFCRSIGLG 78 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF KL LAQ + +++ ++ +DS E+ K+F S + L LD A+ A Sbjct: 79 GFQHLKLSLAQEIVQPVHFIHEDLEREDSTETVCRKVFHSGIQALRDSLSVLDPKAMAAA 138 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD++ A+++ +G+GSSA +A DA + R + D +Q +S C V+ Sbjct: 139 VDIIRAARRVEIYGIGSSAPIAEDAHYRLLRIGLDARVVIDSHVQAISASRCDKDVAVLT 198 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G T V +LA E A I +T+ G +P+ A + + E M SR Sbjct: 199 ISHSGSTNETVAATRLAHEAGARTIVITNFGRSPIQAYADVVLFTMARETRFRTEAMTSR 258 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL VID L L + D LK+ + L RF Sbjct: 259 IAQLCVIDALIAALALADYDRSTDVLKQTFDVLSIKRF 296 >UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oeni RepID=Q04DU1_OENOB Length = 282 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 149/280 (53%), Gaps = 1/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ E I+S E L E+++A+ IL+ D+ + ++I +++ + +S +++RF R + Sbjct: 3 NVTETIRSYYEKLHPGEKRIADYILSHQDSVMDATIQSLSDKIGISTASISRFTRHLGYP 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F DF + L+ S N + + + D E K+F + +A L +++ ++R Sbjct: 63 NFRDFLIALSASKKNSSSDFFTEIKQSDQSEQIVKKLFSAGIAALTATAANINMKDLDRV 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L + KI FFG+G S+ VA +A +KF R N+ +V D +Q M + + D+ ++ Sbjct: 123 VDWLVSSNKIGFFGIGGSSIVAFNAYHKFLRTNLNIVSHPDYDIQIMQAAHLTSEDLGIV 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+GR ++ + + REN + ++A+T+ +P+A+ A + + E M S Sbjct: 183 ISHSGRNQDTLLVENKLRENGSKIVAITAFPESPIAKNADIVLNSYSEEVNFRQESMSSL 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +AQ+T+ID L T R + + ++ ++++R K Sbjct: 243 VAQITIIDTLFTLVGHRLNEQTDQVINSMRRVIEQTRVRK 282 >UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X566_COMTE Length = 282 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 161/281 (57%), Gaps = 5/281 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML+++ + LE L+ +E++V ++++ +P S + +A E VS+PTV RFC+ + G Sbjct: 1 MLDQVMATLETLTPAEKRVGKLVIENPRRFASMSTSEIASECFVSQPTVVRFCKGLGYGG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 FK L ++G PYV+ +V+ D+ + K+ +S++ATL R + K +I RA Sbjct: 61 LTQFKQKLRGDRSDGVPYVHSSVDAGDTSFNVALKVVDSSIATLALFRTYVPKISIERAS 120 Query: 123 DLLTQA----KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + L A + ++F+G G S VA DA +F R +D Q ++ + +GDV Sbjct: 121 NTLAAAYSEQRSLSFYGSGHSGVVAQDAQLRFSRLGFNSTALNDGYSQVLNAASRKEGDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 VV +S +GRTK L+E +A+ A VIA+T +GTPLA ++ + D ED D Y+PM Sbjct: 181 VVALSCSGRTKELLESVDVAKRQGATVIAVTGSGTPLATMGSIHLATDHLEDIDRYLPMS 240 Query: 239 SRLAQLTVIDVLATGFTLRRG-AKFRDNLKRVKEALKESRF 278 SRL L VID++AT L+ G + +D L+R + L+ R+ Sbjct: 241 SRLLHLVVIDIVATAVALQIGCGRLQDQLERTQNHLRHRRY 281 >UniRef50_P44540 Uncharacterized HTH-type transcriptional regulator HI0143 n=33 Tax=Gammaproteobacteria RepID=Y143_HAEIN Length = 288 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 5/282 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L KI S + L+KSE+K+A+ IL SPD S++ +A V E T+ RFCR++ + Sbjct: 6 NVLNKIGSLYQSLTKSEKKIADTILRSPDLVSQCSLSEIAKHLQVGEATLVRFCRTIGFK 65 Query: 62 GFPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 GF +FKL L+ LA + + D + K+ + ++ + LD Sbjct: 66 GFSEFKLELSIELATKDNQDESILETEIMPSDDSLTIAQKLQTAVANVMEETINLLDLKQ 125 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + V +L +A++I FG+GSS A DA NK R V S + M + D Sbjct: 126 LEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAALLTSSD 185 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 V + +SH+G + ++A++N A +ALT S +P+ A + + Sbjct: 186 VAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGKLQGDS 245 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + +++AQL V+D++ ++ + E R Sbjct: 246 IGTKIAQLFVLDLIYALLVQGEEDIAAQTKQKTLNVILEQRI 287 >UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMQ5_CLOPH Length = 285 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 138/283 (48%), Gaps = 6/283 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ K +S ++ L+ SERKVA L + +N IA +A E+ VS+ T RFC+++ Sbjct: 3 NIEIKTRSIMDSLNNSERKVATYFLNNIENIFSIPIARLAEESGVSQVTWIRFCKAIGFD 62 Query: 62 GFPDFKLHLAQSLANGTP-----YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G D K L L + T ++ + ++E I + + ++ +D Sbjct: 63 GLKDLKKSLFMELNSSTSEGIDTSDFSDIKKHSTLEQMCNTIRNTTLQAVEDTIKLIDYD 122 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + + V +L++A I FG+G+SA VA D K R N V +S D+ Q + N Sbjct: 123 TLKKVVSILSKASCIKLFGVGASALVADDFCKKLLRINKNVNFSYDMHTQLVYGANARPE 182 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 DV V+ S++G TK ++E+ LA++++ I +T +PL A +I + PE Sbjct: 183 DVAVIFSYSGTTKEMLEIMDLAKKSNCPTIVITKYTKSPLVASADYSIYISAPEINYRSG 242 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 M SR+AQLT++D+L T + L++ E + R Sbjct: 243 AMSSRIAQLTIVDLLFTSLANKNYTSVEKYLEKSSEVCRSHRV 285 >UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Clostridiales RepID=C2L140_9FIRM Length = 285 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 149/281 (53%), Gaps = 6/281 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L KI+S +K+E+KVA+ IL +PD + SI+ +A V + +V RFC++M+ + Sbjct: 4 DFLTKIRSAYNQFTKAEKKVADYILQNPDQVLFMSISDLAETCKVGDTSVFRFCKTMNVK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVN-----EDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ +FK+ L+ S+ +D+++ GK+ E + ++ LD + Sbjct: 64 GYQEFKMTLSLSMRGNGKESKEGDGGNVSLQDNNIAELAGKVLEETIDSIKETHSLLDFN 123 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + A++ L++AK+I FFG+G+S A AMNKF R V S+ + Q MS G Sbjct: 124 KVTEAMNALSKAKRILFFGVGASMLTAMKAMNKFHRIEPKVYCSEMVSQQLMSAATMERG 183 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM 235 DV V+ S++G T+++VE+A+LA+E+ A V+++T + L + + + Sbjct: 184 DVAVIFSYSGATRDIVEIAKLAKESGATVVSITRFQKSELTDYTDILLLCGANVGSLQKG 243 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + ++QL ++D++ T + R L++ A+K+ Sbjct: 244 STSAEISQLFLVDIMYTEYYRRHYEYCNQILEKTTVAIKDR 284 >UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693BD8 Length = 265 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 2/259 (0%) Query: 21 VAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLA-NGTP 79 +A I+ + I +A + S T++RFC+S+ +GF DFKL L+ LA + Sbjct: 2 LASYIVEHAHEVVSMGITELAERSQTSPATISRFCKSLHFQGFTDFKLKLSGELAKQPSE 61 Query: 80 YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSS 139 + +++ + + I + + ++ D + +AV L A++I +G+ +S Sbjct: 62 HSYQDIVAGNPLSEIVSAIEANHLRSIADTTQLNDIKQLQQAVSALKNARQIDLYGVATS 121 Query: 140 AAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLAR 199 VA D K R D +Q S N + DVV IS++G T+ ++ + A+ Sbjct: 122 GIVAQDFYQKLVRIGKRTSVFSDPHMQITSASNLGENDVVFAISYSGDTEETIQALRCAK 181 Query: 200 ENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRR 258 E A+ I+LT G PLA + + + E+ M SR+AQL VID+L T Sbjct: 182 ERGAVTISLTKFGTNPLANLSDIRLFASTLEEGMRRGDMASRIAQLHVIDILFTSLVSEE 241 Query: 259 GAKFRDNLKRVKEALKESR 277 + L+R + +++ R Sbjct: 242 FDELIPRLERSYQLVRKYR 260 >UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family protein n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A71F3 Length = 300 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 153/279 (54%), Gaps = 1/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I ++L L+ ++R VA+V L P+ A+ + + +A+ A VSEPTV RFCR++ Sbjct: 11 DLFSLIHARLPDLAAAQRLVAKVFLDKPEWAMQAHVNEIAVFAGVSEPTVVRFCRALGFH 70 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFKL +AQ +A G+ ++RNV DS++ GK+ S+ L + L + I RA Sbjct: 71 GLRDFKLRVAQQVALGSVALHRNVTAVDSIDEIVGKVLRSSADILLDIERQLPREQIKRA 130 Query: 122 VDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L A ++ +G+G +S VA DA + FRF + D +Q S S GD V+ Sbjct: 131 ISALGSAHRVDCYGVGTTSGFVAADAQARLFRFGIQAQTYTDANMQMFSAATLSPGDGVI 190 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH GR L+E ++ARE A+VI + GTPLA E + +T +P + Y+ + Sbjct: 191 AVSHFGRMPFLLEAVRVARERGAVVIGICEPGTPLAGECDIPLTFALPASVNAYIGSDAC 250 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 +A L +ID+L G RGA + L+R++ L D Sbjct: 251 IAHLAIIDILIVGVAFERGAAGIEQLRRLQNVLSPHGLD 289 >UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C2G7_BEUC1 Length = 285 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ IQS+L+ + S R+VAE IL P + +I+ +A + SE T+ RFCR++ Sbjct: 1 MSIQSSIQSRLDQFAPSMRRVAEAILERPQVVLEKTISELASQCETSETTIVRFCRTLGL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNR------NVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 G+ +L LA + ++ +D + + KI + ++ SLD Sbjct: 61 TGYVQLRLELATEIGRENAQRGELGDHGADILAEDGLAAMAAKIAFTDTLGIEETLASLD 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + R VD + A + +G+GSS + A D K FR DD + S Sbjct: 121 IEHLERVVDAIDTAGRSVTYGVGSSGSSAADLQRKLFRIGRVAFTFDDPHDAVTAAALSS 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDI 233 GDV V SH+G T+ + A ++ A +A+T SA + LAR A + + V E Sbjct: 181 PGDVAVAFSHSGATREALAFLATAGKHGARTVAVTNSAESALARAADIVLVTSVRETQFR 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR+AQL ++D + G RR + D LK A +E R Sbjct: 241 SGAMASRIAQLMIVDCIFVGVAQRRYDQTVDALKSTYAAAQELR 284 >UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteraceae RepID=B9NXN7_9RHOB Length = 320 Score = 247 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 150/289 (51%), Gaps = 2/289 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ + + L+ E+KVA+ + + +I +A +VS+PTV RFCRS+ Sbjct: 32 VDLIPALHNSQTKLAVQEQKVADYVKDHLNEISSMTIGNLAERCSVSKPTVVRFCRSLGC 91 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNV-NEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF DFKL LAQ++A Y+ RN +E S ++ + ATLD +R +D + Sbjct: 92 EGFRDFKLRLAQNVAVSAQYLYRNAGDESSDANSAIDQVLGALFATLDVMRGQIDTERLE 151 Query: 120 RAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 A D ++I F G+G S+ VA +A N+FFR +P + +D + +M DV Sbjct: 152 EARDACLDRRQILFAGIGGGSSLVAQEASNRFFRLGIPSFFVNDSYVLQMRAAALGLEDV 211 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 + L+S +G +V A++A A I++T T L+ + +A+ ++PED+DIY P Sbjct: 212 LFLVSASGEADAIVSAAEVANGYGATTISITKPNTRLSDISKIALLTELPEDSDIYKPTA 271 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 SR A L ++D LA + ++NL+R++ +L L D Sbjct: 272 SRYAHLAIVDALAMTVAQEMTDETKENLRRIRASLTAYHGRTGPQPLGD 320 >UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=Propionibacterium acnes RepID=D1YCB1_PROAC Length = 290 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 7/283 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I + +E +VA VILA PD + +S + +A A VS TV RFCR++ Sbjct: 4 SLLPRIDMARTTMRPAEAQVAAVILAKPDWTLAASTSQLAEAAGVSPATVVRFCRALGMS 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRN------VNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ + + LA+ L+ T + R+ + DDS+ KI T+++ ++D Sbjct: 64 GYRELRTELARDLSRRTLELERSSVAEGTITLDDSLTQMITKIAFHEARTIENTARAVDA 123 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + ++ A + A FG+GSS VA D K R + + D +Q + C Sbjct: 124 DELEAVASAISIAPRTALFGVGSSGLVASDLSEKLERIGLVCQHHQDTHMQLVHAALCKR 183 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 V + IS +G T+ +VE +A+++ A +A+T +P+ R A + E Sbjct: 184 PCVALGISFSGNTQEVVEALTVAQKHGATTVAMTGLPDSPVGRLADHVLVTSARETQVRA 243 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR+AQL V+D L L + A+ R Sbjct: 244 GAMSSRMAQLAVVDFLFARVAQLCMDDLETLLSSTRTAVSTHR 286 >UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=Gammaproteobacteria RepID=B4EZY5_PROMH Length = 295 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 5/279 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ + + L++ +++A+ IL P SIA ++ E TV RFCR++ +G Sbjct: 14 ILDTLGAMKNSLTRVSQRIADYILFHPTEVTQLSIAQLSQATKAGEATVVRFCRTLGYKG 73 Query: 63 FPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F DFK+ LA +A + +P ++ V+ D + + K+ + L + LD + Sbjct: 74 FQDFKMDLAIEMATSDNDESPILDAEVSHQDDIHTIGLKLQATINNVLSETLNLLDMQQV 133 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV+ L A + G+GSS A D NK R V + M GDV Sbjct: 134 QGAVNALLSANYVFICGVGSSGITAEDLKNKLMRIGYRVDAVTNNHFMYMQASLLKSGDV 193 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 + ISH+G + V +LA+E A IALT + G+ + A + + + Sbjct: 194 AIGISHSGNSLETVHALKLAKEAGASTIALTHNLGSQIMEYADHHLINGNRQGKLQGDSI 253 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 ++ AQL V+D+L T + ++ R ALK++ Sbjct: 254 GTKTAQLFVLDLLYTLLVQAKPETVKEQKLRTLNALKQT 292 >UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment) n=3 Tax=Lactobacillus RepID=C2D3P4_LACBR Length = 281 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 143/278 (51%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + ++ ++ ++LS++ +K+A+ ++ +P A ++I +A S +V+R +++ Sbjct: 3 SPVQMLKQSFDNLSRTNKKIAKYVIDNPQAASEANIEDLAAVTETSTASVSRLVKTLGYS 62 Query: 62 GFPDFKLHLA-QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F +F L LA L + ++++ +D++ + KIF S+ L R +D++ R Sbjct: 63 NFREFTLSLAYTQLRPQNLPIFKDIDANDTLSTIADKIFTSSQRALQDTREGIDENEFAR 122 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 +V + +++ FFGLG S+ A D +KF R ++ Y D +Q M + + D + Sbjct: 123 SVLRIIHCRRLGFFGLGGSSVAALDGYHKFLRTSIDCFYYPDFDVQLMQAVKLGEDDCAI 182 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 ++SH+G+ + +++A+ + VIA+TS +PL + + E M S Sbjct: 183 VVSHSGKNRQTIKIAETLKRRKVPVIAITSYQDSPLVGHSDITFISSSDESNYRSEGMYS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 LAQLT+ID L T+R G D ++ V+ ++ +R Sbjct: 243 LLAQLTIIDTLFMMATVRMGPATEDTIRSVQNIIESTR 280 >UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZR0_ERYRH Length = 280 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 137/278 (49%), Gaps = 1/278 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + +I+ + + +E+++AE IL + D ++ S A E N S + RF + + Sbjct: 1 MSCIYRIKENMHTYTDTEKRIAEYILENKDEVVNFSSQHFAKEINSSAAAIVRFSKKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ LA+ + ++ + E+D++E+ K S T D+ L+ ++ Sbjct: 61 NGFTHLKVELARDHSEEEQSFDKLIKEEDTIETMVRKSHYSNHRTFDNTYKLLNLEVLDA 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ ++ A++I G+G S V D +KF R + VVY DD L+ S + ++ DV + Sbjct: 121 SIAAISNARRIYLLGIGGSGIVCQDLYHKFVRIDADVVYFDDFHLEMSSLTHITENDVTI 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 +S++G+T+ ++ +LA++ A IA+T G LA+ + I + E + S Sbjct: 181 ALSYSGQTREIIMAQKLAQDKGATTIAITQVGRNELAKNSDFVINIPKEESEVRLGSIAS 240 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R + L + D+L G + R + ++ +K R Sbjct: 241 RFSMLAISDLLYLGVAKNNIEETRRKIVNTRDTIKSIR 278 >UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPL3_9FUSO Length = 285 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 147/277 (53%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 NM I++ LSK E+ +A+ IL + + + + +IA +A V T+ F + + + Sbjct: 5 NMKFTIKTIYNDLSKKEKLIADYILKNINKSTNLTIADLAENIGVVNSTIFSFTKKLGFK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +F+ L + N V+ ++++DS+ S K+F S + +L+ + +K + + A Sbjct: 65 GFREFRDSLLRDQFNSNINVHEKISKNDSITSIIEKVFNSNIKSLEDTKKIAEKKSFSTA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + +LTQ + FFG+G S+ +AHDA +KF R + + D LQ M + D + Sbjct: 125 LKILTQVDIVHFFGVGGSSVIAHDAYHKFLRSPLKCRFDSDFHLQLMQASLLTKNDCAFI 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G TK +E+A +A+E A +I LTS + LA++A + E + SR Sbjct: 185 ISHSGMTKESIEIADIAKERKAKIIVLTSYPLSILAKKADITFISTAEEIEYRSEALSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL+++D + L K + +L +++ + +++ Sbjct: 245 IAQLSILDTIFILVMLNNPTKTQISLNKIRTTIAKTK 281 >UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A8RRF4_9CLOT Length = 289 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 4/272 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +IQ S +E+ V + +P+ A SI +A + S T+ R CR M Sbjct: 3 SVLVRIQEYSAQASGAEKGVLRFLRENPEEAAGYSIKQLADKTFSSAATIVRLCRKMGFD 62 Query: 62 GFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + + L A T + + + +DDS+E K+ + +LD+ R +D + Sbjct: 63 GYKELQKSLLYESALRRESTRPMEQEIKKDDSLEELVNKVTYKNIVSLDNTRKLVDLDIL 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 N+ V+LL +++ + FG+GSS VA D K R N V DD Q + N D+ Sbjct: 123 NQCVELLDRSQTVYLFGIGSSLLVARDMYLKLLRVNKACVICDDWHAQLLQARNIRSCDL 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 +++S++G T+ ++ A+ AR +A VI ++ +PL R A + + E M Sbjct: 183 ALIVSYSGLTEEMITCAREARLREAPVITISRFEQSPLVRLADYNLAVAATELIFRSGAM 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRV 269 SR++QL +ID+L T + +R + + ++ Sbjct: 243 SSRISQLNMIDILYTAYVHKRYDECMEQFRKT 274 >UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulator ybbH n=7 Tax=Bacillaceae RepID=YBBH_BACSU Length = 283 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 132/277 (47%), Gaps = 2/277 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L IQS L SERK+A+ ILA P AI S++ ++ AN S+ V R C+S+ +GF Sbjct: 6 LAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGF 65 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K+ +A LA T R++ + + S + K +A+ + +D + RAV Sbjct: 66 QDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVS 125 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 LL +A + F GLG+S VA DA K+ R + D L N D+V IS Sbjct: 126 LLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAIS 185 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITL-DVPEDTDIYMPMVSRL 241 +G T+ +VEL +A+E I+LT T ++ A + + E SRL Sbjct: 186 FSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAATSSRL 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 AQL +IDVL G + + + + A++ R Sbjct: 246 AQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRI 282 >UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=Bacteria RepID=D1AUV3_STRM9 Length = 272 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 143/277 (51%), Gaps = 8/277 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + IQS SK E KVA+ ++ D + + + NVSE T+ RF + + Sbjct: 1 MKYITLIQSFYPSFSKQEIKVADYVIKEKDAICFMPLHEITKKINVSEATIVRFVKKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GF DFKL +A+ +A +E ++ E Y I + + T+ + ++ ++K + Sbjct: 61 KGFIDFKLEVAREIATIE-------DERNTKEHYIENIEYNIIETIKNTKNLINKEDVEN 113 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A++ + +KK+ FG+G+S A + N+F RF D Q M ++ DV+V Sbjct: 114 AIEAIENSKKLYVFGMGASGVAALEFQNRFMRFGKIGHSVSDGHFQVMYASTTTEKDVIV 173 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 +IS +G T +L+ +A+EN +IA+T+ +P+A+ + + I E +VS Sbjct: 174 VISLSGETVDLIYPLSIAKENGCKIIAITNYILSPIAKLSDIVILTSGKETLLNGGALVS 233 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +++QL +IDVLATG+ LR K + + + EA+ Sbjct: 234 KMSQLYIIDVLATGYALRNSKKAKLVRQGMAEAIANK 270 >UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789683 Length = 289 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 140/277 (50%), Gaps = 3/277 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L I S L+K+E+KVA+ + P+ + +++ ++ +A V E +V RFCR + R Sbjct: 12 NTLLMISSIYSSLTKTEKKVADYVKGFPEETVLATVTDLSEKAGVGETSVIRFCRKLGFR 71 Query: 62 GFPDFKLHLAQSLANGTPYV-NRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL +AQ L + P V + +++E D + + K+ L + ++ + Sbjct: 72 GFHEFKLSVAQDLVDRPPSVVDTSIDEQDDLMTVARKLTMQHEILLKNTLDLVNADNLRM 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVD L A K+ +G+GSS A D + R + V D + MS GD+V Sbjct: 132 AVDKLLAANKVYVYGVGSSGITALDLHYQLMRLGLNVEAHRDSHIIAMSASLVKKGDLVF 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T++LV+ + A++N A VI LT +P+A A + + E + + Sbjct: 192 AISTSGSTRDLVDAVKEAKKNGADVICLTGHLRSPIATYADTVLLVSSREMPTEGGALAT 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + Q ++++L T T+++ ++LK+ ++ + Sbjct: 252 KFMQTYMLNILTTLLTMKKED-ASESLKKTASSVADK 287 >UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=Actinomycetales RepID=A8LV24_SALAI Length = 320 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 6/282 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L ++++ + L+ + R+VAE +L+ P+ A ++I +A + S T+ RFCR+M Sbjct: 32 GVLARVRAGADDLTGALRRVAEHVLSDPEAAARATIVELAERSGTSPATITRFCRAMGFE 91 Query: 62 GFPDFKLHLAQS-----LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ D +L +A LA T + R + D + +I + + LD + Sbjct: 92 GYADLRLGIAAETGRARLAGWTVDIGREIQPGDPLRRVLDQIIAADTRAMHDTAALLDLA 151 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + RA + A ++ FG SA V + R V D+ S G Sbjct: 152 EVERAAVAIAGASRVNIFGASGSALVGEEMQFMLHRIGVAAWAWSDVHEGLASAALLRVG 211 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM 235 DV + +SH+G+T+ +E+ A A +A+T +PLA A +A+ T Sbjct: 212 DVALGVSHSGQTRETIEMLAEAGSRGATTVAVTGFPRSPLAELADIALLTASRATTFRPD 271 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + +R QL V+D+L R + L+R +A+ + Sbjct: 272 ALSARHPQLVVLDLLYIAVAQRTHDRAHAALRRTAQAVDGHK 313 >UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus lactis RepID=Q02VU4_LACLS Length = 282 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 143/279 (51%), Gaps = 1/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ +I+S ++LSKS++ +++ ++A+ D+A SI A + VS T++RF + + Sbjct: 4 TLISRIRSYYDNLSKSDQAISDYLIANIDSAAMLSIQEFAQKTQVSTATISRFSKKIGFN 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F + KL + + + ++ D + K F +++L+ + + +++ Sbjct: 64 SFQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLDQT 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +++L +A FFGLG S AVA A +KF R + VY D Q+M + D + Sbjct: 124 MEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDCAFV 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISHTG+ K+ + L ++ + +IALTS A +PLA+ A +A+ E + + S Sbjct: 184 ISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAVAST 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 ++Q++++D L + ++ L +++ + +SR Sbjct: 244 VSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSRIS 282 >UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNY6_HAHCH Length = 285 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 96/279 (34%), Positives = 147/279 (52%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++ + L KSE+KVAE +L +P++ IH I +A EA VSEPT+ RFCR++ Sbjct: 6 DILSWLRQNRDTLRKSEQKVAECVLRNPNDVIHMRIVDLATEAGVSEPTIVRFCRTICFD 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F FK+ LAQ LA+ DS++ KIF ++L V + L I +A Sbjct: 66 SFQSFKVSLAQQLASMQRQTPFRARSGDSLQQLGAKIFSDVQSSLQQVFNQLAWDRIEQA 125 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++ + ++ FFG G+SAAVA DA KFFR D Q + DV++ Sbjct: 126 CAWISNSPRLYFFGYGASAAVAADAQQKFFRLKPSTHACPDPDTQMLIAGLVETNDVIIA 185 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISH+GRT NL++ AR + A V+A++ + LA A L I + V E+ D + P+ SRL Sbjct: 186 ISHSGRTNNLIQSCMQARASGAKVVAISPPQSALANIANLNIGVSVDENADAFTPLASRL 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 A L ++D +A+ + + L + K+ L R Sbjct: 246 AHLMILDTIASNLFQKLDEQHVQKLNQAKKNLSSLRLSP 284 >UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YX9_LACSS Length = 280 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 136/272 (50%), Gaps = 2/272 (0%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 ++S ++ S+ +++A+ I +I A VS T++RF + + F F Sbjct: 9 LRSYYDNFSEKYKQIADYIFQESQFNQRLTIQEFAANCGVSTATISRFAKILGFDNFQAF 68 Query: 67 KLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 K+ L AN +P + +N +D+ + KIF S L L + + +AV L+ Sbjct: 69 KMALLAKEANTSPLFH-EINANDTFTTMAEKIFSSNSNALKATWSLLTEEQLQKAVALIN 127 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 +A ++ FGLG+S VA D +KF R ++P V++ D LQ M ++ D ++ISH+G Sbjct: 128 RAHLLSLFGLGASGIVAQDGYHKFLRTSIPTVFNQDYHLQLMQATKLTNQDCAIIISHSG 187 Query: 187 RTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQLT 245 + K+ +ELA++ +E +I +TS G + LA+ + + E + + +AQ++ Sbjct: 188 QNKDALELARILKERQVPLIVITSFGNSSLAKLGDITLLSISEETNYRAEALHALIAQIS 247 Query: 246 VIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +ID L + G + + K ++ + +R Sbjct: 248 LIDSLFMMVAVNNGQETEQSFKEIRAEIDRTR 279 >UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG85_KOSOT Length = 275 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 4/277 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++ +++ + LS+SER+VA+ I+ PD+ IH +I +A ++ SE TV R + + G Sbjct: 2 IIVQLKGIYDSLSESERRVAKYIIERPDDVIHYTITELAKFSHSSEATVYRLVKKLGFSG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + FK+ LA+ L+ + + S +++ +I + ++ LD A+ +AV Sbjct: 62 YQSFKISLARELSIPQEVIEE--GSEGSYQNFVERIVQENISLAKETMAVLDLDALKKAV 119 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +L+ A+++ FFG+G SA VA F + D Q M ++ DVVV I Sbjct: 120 ELIINARRLVFFGVGRSAVVAQSGSFNFALLGFSSTHYIDPHAQVMVASGLTNEDVVVGI 179 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG ++ V+ Q+A A I +TS +P+ + + VSR+ Sbjct: 180 SHTGTIRDTVKSVQVAHAAGAKTIVITSGINSPITEVGDVVLYTAAG-KPSTSEFTVSRI 238 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + ++D+L R + + +++E LK RF Sbjct: 239 GEFLILDILYKTVVARMSERLSKHFDKLEEILKPKRF 275 >UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium RepID=C3WE65_FUSMR Length = 284 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 6/265 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L KI S L+++S +E+KV E IL +PD + +A S+ TV RF + + Sbjct: 1 MGVLIKINSMLDNISSTEKKVGEYILENPDKIKDLNTYELANITKTSQATVVRFAKRLGF 60 Query: 61 RGFPDFKLHLAQSLANGTP-----YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +GFP FKL L+Q L N ++ + DDS E KI + + D Sbjct: 61 KGFPAFKLALSQDLGNRKAESHVNIMHEEIKPDDSFEIIGRKISNENITAISDTYEVTDF 120 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + +AV +L++A+KI G+G S VA D K + D +Q + Sbjct: 121 TELEKAVVMLSKARKIMLAGIGFSGIVAKDFYYKLLELGKHAMIEVDTHMQLSCLSTMGE 180 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 DV+ +ISH+G+T + + ++A+ VIA+TS A P+ A + + Sbjct: 181 DDVLFVISHSGKTMEMYNVVKVAKSKGITVIAMTSIAPNPIKDLADIRLNTVEMNSNFRS 240 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRG 259 + R++QLTVID+L L Sbjct: 241 TALSPRISQLTVIDMLYVKMMLENK 265 >UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N1V0_9FIRM Length = 277 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 1/276 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN KI+ + +E+ +A+ IL + + + S ++ + S + RF + + Sbjct: 1 MNSYAKIKEAQSSYTSTEKVIAKYILENAADVLKCSAQSLGEKTGTSAAAIIRFSKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF + K+ LAQS ++ ++E+D + + K M T+ +D + ++ Sbjct: 61 NGFSELKMSLAQSKRAPEEKIDFIIDENDDIVTLADKCCRLNMNTVLKTYQLIDTNQLDN 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A+ L A I FG+G SA VA D K R V+Y+ D+ +Q + + D + Sbjct: 121 AIKKLIAANTIYLFGVGGSAIVAQDVEQKLTRIGKKVIYNKDLHVQLTFSESMNKEDAAL 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G TK LVE+A++ + + +I++T PL++ + + + + E + S Sbjct: 181 FISYSGTTKGLVEIAKMIKNKNVPIISITQFKPNPLSKLSDIILQVPNEEKEIRMGAISS 240 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 R++ L + D+L G +D L K + + Sbjct: 241 RISSLVMTDLLYYGVFKNDLTGNKDKLIETKRIVSK 276 >UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3D9_THELT Length = 276 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I++ + +K E ++A+ ++ PD IH SI + E + + TV RFC+ + Sbjct: 4 DVQTIIKANQKQFTKKENELAQFVIDHPDEVIHMSITEIVDELRIGQGTVVRFCQKLGFS 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL--DKSAIN 119 GF FK+ LA+SL + + + E + ++ L ++ + Sbjct: 64 GFHPFKIALAKSLGRQE-------EASEGSKDMLAMVKEDHIKAIEETSKLLKLNEKVVY 116 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + + ++ +++ G+G+S A DA KF R V V Y D Q MS C++ D V Sbjct: 117 QCAEKISNCRRLYLLGVGASGVTALDAYYKFMRIGVDVKYMLDPHFQAMSLSGCNEKDCV 176 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 V S +G T +V++AQ+A++N A VIA+T +PL A + V E+ + Sbjct: 177 VAFSQSGSTAVVVDMAQIAKQNKACVIAVTGYNKSPLTFYADFVLLTAVRENPFQSGAIR 236 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 S++AQL V++VL L K + N+ R ++++ Sbjct: 237 SKIAQLHVLEVLFEQTKLLLADKAKQNVDRTARSVEK 273 >UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=Roseobacter sp. GAI101 RepID=B7RLA4_9RHOB Length = 317 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ HL+ E+KVA + A ++ +IA +A +VS PTV RFCR++ Sbjct: 30 DVISALRRHDGHLATQEQKVANYVKAHLEDISAMTIAELAGHCDVSTPTVIRFCRTLGCD 89 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNED-DSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL LAQ+LA Y++ + + ++ +I A+ + +R +D ++R Sbjct: 90 GFREFKLRLAQNLAVSMQYLSADPQPEPADGDTAINQILGGIYASANVMRRQIDPEVLDR 149 Query: 121 AVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A L + + + F G+G S+ V+ +A N+FFR +P + D + +M GDV+ Sbjct: 150 AKSALLKTRHLLFAGIGGGSSNVSQEAANRFFRLGIPSFSTSDSYILQMRAATLQAGDVL 209 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 LIS +G +V A++A A I +T +GT LA + I +D+PED DI+ P S Sbjct: 210 FLISASGEADAIVGAAEIAGGYGATTICITKSGTRLANVCNIPILIDLPEDRDIHKPTAS 269 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R + ++D LA + +NL+R++ +L L D Sbjct: 270 RYIHMIIVDALAMSVAQDLAHETTENLRRIRASLTAYHGRTGPQPLGD 317 >UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=Gammaproteobacteria RepID=A0KFB6_AERHH Length = 286 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 79/289 (27%), Positives = 146/289 (50%), Gaps = 11/289 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L KI + LS SE K+A+ ILA P+ H S +A +A+VS+ ++ +F + + Sbjct: 1 MLTLSKISNIRSQLSPSELKIADYILACPEQVTHFSSQELAQQADVSQSSIVKFTQKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTPY-------VNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GF FKL +++ L + + DD +E+ K+ + + ++ +L Sbjct: 61 KGFTAFKLAVSEDLGRKHAIKTDNVGDLYNGIGRDDDLETMAKKLAQEKINSIVETTQAL 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + R +D++ QA ++ G+G SA A D K + V +++ D +Q Sbjct: 121 DNATLARVLDVINQAGRVQLVGIGGSALTAKDLWYKLLKIGVTTLFAQDSHVQISIAQTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTD 232 GDV +++S++G +++++ A+LA+ N A +IA+TS TPL + A + + E+ Sbjct: 181 GPGDVQLVVSYSGASRDVLAAAELAKRNGATLIAVTSFRNTPLRQMADMVLDTVADENEL 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 + SR AQ T+ D+L G RR + + + A+ R +K+ Sbjct: 241 RISSISSRTAQNTITDILFLGLVQRR-DEAWALIDGTRGAID--RLNKE 286 >UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n=22 Tax=Gammaproteobacteria RepID=A4TMJ1_YERPP Length = 292 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 132/279 (47%), Gaps = 5/279 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ + + L++S +++A ILA P SIA ++ E T+ RFCR++ +G Sbjct: 13 ILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKG 72 Query: 63 FPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F DFK+ LA +A + ++ +V E D + K+ + L + L ++ Sbjct: 73 FQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESV 132 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + V +L A +I FG+GSS A DA K R + V + + M + GDV Sbjct: 133 EQVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMNPGDV 192 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 + ISH+G + V+ +LA+E A +ALT + G+ + A + + + Sbjct: 193 AIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQGDSI 252 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +++AQL V+D++ A+ ++ +A+ ++ Sbjct: 253 GTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQN 291 >UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteobacteria RepID=B7LQI9_ESCF3 Length = 301 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 157/287 (54%), Gaps = 6/287 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ I + L+ +E+++A+ IL A+ IA +A S+ +V RF R++ + Sbjct: 20 DIISCITERFMALTATEKRIAQFILDDVPAAVELPIAELARLTQTSQASVTRFARALGCK 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + K+ LAQSLA G ++ +V + D V+ I+ES ++ L+ R SLD +AI++A Sbjct: 80 DVRELKVKLAQSLAIGQRFI-LDVPDLDGVQG----IYESIISVLETHRRSLDMNAISQA 134 Query: 122 VDLLTQAKKIAFFG-LGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V L+QA++I G G S + + + FR +PVV +D ++ RM C DVV+ Sbjct: 135 VSWLSQARQILALGTGGGSTICSQEIQYRLFRLGLPVVSQNDALMMRMMCSAVMPQDVVI 194 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ++S G T ++E A +AR+ A VIA+T A TPLA + L + L V E I+ P SR Sbjct: 195 VLSLGGYTPEIIESAAIARQYGARVIAITPAQTPLAEQVDLVLPLLVQESDYIFKPTPSR 254 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 A L ++DVLAT + A+ +D L+R+K L R L D Sbjct: 255 YAMLAMVDVLATELAMANKAQAKDRLRRIKLVLDSHRGGANRQPLGD 301 >UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=Clostridium RepID=A6LUR0_CLOB8 Length = 281 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 5/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L+ I+ + + E+ +A+ ++ + + I S +A S PTV RF + + Sbjct: 1 MNVLQYIKQNYDSFTDREKLIADYLIETKERIISMSARDIAEATKTSAPTVVRFAKKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDS---VESYTGKIFESAMATLDHVRHSLDKSA 117 + KL L+ +++ D+ ++ I +S + ++ LD+ Sbjct: 61 NTLNELKLKLSINISKEEEAGAIQFQYLDNDLGTKNIIYGIKQSVDSIMEQTVSLLDEEC 120 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +++A++LL AK I F +G S V D K R N + + D LQ S + +GD Sbjct: 121 LDKAIELLISAKNIYIFSVGVSGLVGQDFYYKLSRMNKRCICNTDTHLQITSSVLLEEGD 180 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT--SAGTPLAREATLAITLDVPEDTDIYM 235 V + IS++G TK +++ + AR VIA+T S +A + + I + E + Sbjct: 181 VALAISYSGETKEVIKCVKNARNRKVPVIAITKASVNNTIADISDIVIRIPAVEKSIREG 240 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR++QL +ID+L G + + L ++A+KE Sbjct: 241 AISSRISQLAIIDMLYIGMIRNNIKEVEEKLISTRKAVKE 280 >UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9G3_9ACTN Length = 285 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 2/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ KI+S L ++ E+ +A+ IL + +I +A + V++ T+ +F + M + Sbjct: 5 SVTAKIKSLLPSCAEKEQAIAQFILQHVRETSYMTIHELADKLGVADSTIFKFAQKMGYK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF DF+ L + V+ ++ DS+ + IF S++ +L + L++ + RA Sbjct: 65 GFRDFRNDLLTEAYDPEVSVHEHITTRDSLATIAATIFHSSVTSLHNTLALLNEDNLKRA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L+ A + FFG G S VA DA +KF R + + D +Q M DV ++ Sbjct: 125 LSLINNAHTLTFFGCGGSNIVAADAYHKFLRSPLHCQNAIDEHIQIMQASLLGAQDVAII 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G ++ +++A++ REN +I +TS TP+ R A + E + SR Sbjct: 185 ISHSGLSRTTLQIAEILRENRVPIIFITSYLNTPITRFADVVFISASEETGYRSESLASR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFR-DNLKRVKEALKESRFD 279 +AQL ++D L + K L ++ A+ ++ + Sbjct: 245 VAQLVILDTLFCAVMFKSDDKNVAQTLHNIRSAINRTKIE 284 >UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L9A2_9FIRM Length = 336 Score = 240 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 5/266 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L+ I Q L++S +K+A+ I A+ + SI+A+A + VSE T+ RFCR + Sbjct: 55 NILDLITEQYPTLTRSGKKLADYIFANTTETQYLSISALAENSGVSEATITRFCRKLGLS 114 Query: 62 GFPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+ DFKL +A+S + DS+ K+ + + +L LD+ Sbjct: 115 GYNDFKLAIAKSDHVTDMGEPSGSPSTITSQDSLPDIFQKLLSANILSLTETFDLLDEKE 174 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 I+RAVDLL A + G GSS+ +A +A +F + ++ D +Q +S + D Sbjct: 175 ISRAVDLLYGAHHVYCLGNGSSSVMAMEAWARFSTASTRFIHIADSHMQMLSIALATPQD 234 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V++ S++G T+++ ++ +A + VI +T + A A + + E Sbjct: 235 VILFFSYSGATRDMEDIMNIAHKRKIPVILVTHFPKSQAAAFADVTLLCGYNESPLQSGS 294 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKF 262 + +R+ Q+ +ID L GF L+ + Sbjct: 295 IAARMGQMLIIDCLFHGFCLKSPGYY 320 >UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA31_9ACTN Length = 281 Score = 240 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 5/273 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++L +++ ++ S +ER++ E IL P++ SI +A A VS T+ R C+ + Sbjct: 2 VSLLVRLKQYRDNASPAERELIERILDDPESISGLSIHELAAYAFVSPSTITRLCKKLGL 61 Query: 61 RGFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 +G+ +F+ L LA + ++ D+ K+ + +L V D Sbjct: 62 KGYKEFQHLLIYDLALLRESSSSKIEDLAPTDTSRQTIEKVTRDNIDSLRLVEKLNDPET 121 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 VDL++ A+ I FG+G+S A D K R V DD Q + N D Sbjct: 122 YEACVDLMSDARTINLFGMGASLLSARDMHYKLLRIGVSCNLIDDWHGQLLCASNSGPED 181 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS--AGTPLAREATLAITLDVPEDTDIYM 235 + + IS++G T+ + ARE VIA+T + LAR+A + + E Sbjct: 182 LSIAISYSGLTEEVNVCVGRARERGGKVIAITGSAFDSKLARQADEVLLVGSTEPLMRSA 241 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKR 268 M SR+ QL VID+L F R A+F + L++ Sbjct: 242 AMASRIGQLGVIDILFKSFVNRNYARFSEVLEQ 274 >UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q61_LACBA Length = 286 Score = 239 bits (611), Expect = 6e-62, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 143/282 (50%), Gaps = 4/282 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + + KI+ + LS++E+KVA++ L +P +I +A VS T++RF + MD Sbjct: 4 STIGKIRGTYDQLSRTEKKVAQMALNTPAVVSEMTIKELASATGVSTATISRFVKRMDYA 63 Query: 62 GFPDFKLHLAQ---SLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + +F + LA + E DS+ + K F +++L+ +L + + Sbjct: 64 NYREFTMALAHLAIEDGGEHQSSFPELAEGDSLATIANKTFHYTISSLEATNEALSEKDL 123 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RAV L A+K+ FFGLG S+ A D +KF R + V Y D +Q M SD D Sbjct: 124 ARAVLKLINAEKVTFFGLGGSSIAALDGYHKFLRTALSVTYYPDFDIQLMQAARLSDQDC 183 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 V+ISH+GR +++ + + ND +IA+TS G+PLA+ A + E M Sbjct: 184 AVVISHSGRNSETLQVVEELQRNDVSIIAITSYSGSPLAQAADVTFLSLTDEVNYRSEGM 243 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 S ++QL ++D L LR ++ + + +V + ++++R D Sbjct: 244 YSLISQLAILDTLFMMTVLRVSSRTGNVMTKVHDVIEQTRHD 285 >UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W838_ATOPD Length = 304 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 5/266 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +++ ++ S +ER + + IL+ P+ + SI +A + S TV R C+ + G+ + Sbjct: 7 RLEEYRKNASSAERDIIDYILSDPEAVVGQSIHKLAAQTYTSASTVVRLCKKLGCGGYKE 66 Query: 66 FKLHLAQSLANGTPYVNRNVN---EDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F+ L LA + V D+ + K+ +++L+ LD ++ V Sbjct: 67 FQQALIYELAVSNKSNDIAVGGVIAGDTTDVIIEKVTAKNISSLELTMQLLDAQVVDSVV 126 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ QA I FG+G+S VA D K R N+ SDD Q + N S D+ +++ Sbjct: 127 SLMMQAHSICLFGMGASLLVARDLQLKLMRLNINCNLSDDYHSQLLYAKNMSREDLAIVV 186 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAG--TPLAREATLAITLDVPEDTDIYMPMVSR 240 S++G T+ +E A +A+ N A VI++T G + L + + + E M SR Sbjct: 187 SYSGLTREAIECAWIAKANGAKVISITRGGIDSELIHRSDYVLGVAETEHIMRSGAMSSR 246 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNL 266 +AQL V+D L + R K Sbjct: 247 IAQLNVVDALFAAYVNRNYEKSVKRF 272 >UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=Alphaproteobacteria RepID=C6B6F5_RHILS Length = 287 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 145/288 (50%), Gaps = 2/288 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ +Q LS SE ++AE+I+ + A+++SI +A A VS PTV RFCR + Sbjct: 1 MDIFSTLQEDKGRLSPSESRIAEIIVNDFEFAVNASIIELAERAKVSPPTVTRFCRRLGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFK+ LA++ G Y+ D + I A L + SLD +AI Sbjct: 61 ESFSDFKVQLARTAHIGVRYLKPESKSTDPAD-VAQDIITKAQNALFLLHRSLDLAAIEA 119 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV + +A I FG G +S+ +A + N+ FR + + S D +Q M GDV+ Sbjct: 120 AVSHIAKADMIYAFGSGGNSSMIADELQNRLFRLGLRITASSDHSMQLMMAAAARPGDVL 179 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +GR LV +LAR+ IALT +P+A+ A + + +D+PE +IY P + Sbjct: 180 IGSSFSGRNMELVRAFELARQTKVKTIALTQTDSPVAKAAEIVVPIDLPEGHNIYRPTST 239 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R+A + ID+L++ K L+R+K+ L R L D Sbjct: 240 RIAYIATIDILSSLVAYAVQPKATTTLRRIKQQLVIHRDGDDRQLLGD 287 >UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJ20_EXIS2 Length = 284 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 2/275 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + +I + E L S RKVA+ +LA + +I +A E+ S V RFCR++ + Sbjct: 4 GIFSQISAVHEELPSSSRKVADFVLAHMNEIAGMTIHHLAEESGTSAAAVVRFCRALGLK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+P+ ++ ++ A ++ +++ K +++ L L + I A Sbjct: 64 GYPELRMRISADTARTDLKGYHDIEKNERPADLVEKTVSNSIQALQDTAKQLSEDRIAEA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 D+L QA+ I F+G+G+S VA DA K+ R + D L N S DV Sbjct: 124 ADVLDQARAIYFYGIGASNVVALDAAQKWTRVGKLTIQESDQHLVATILANASQDDVFFA 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLD-VPEDTDIYMPMVS 239 IS++G T+ +VEL +LA+ VI+LT G +++ A +A+ PE + S Sbjct: 184 ISYSGETEEVVELIRLAKIRGLKVISLTRFGDNRVSQLADIALWTSRAPEAPLRSAALSS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 RLAQL IDVL + + L+ +E++K Sbjct: 244 RLAQLFAIDVLFLSYAAVHYDDTIERLQYTRESVK 278 >UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EB66_BRASB Length = 270 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 1/270 (0%) Query: 10 QLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLH 69 L L R++AE+I A P+ +H SI +A +VSE T+ FCR + RGF + K+ Sbjct: 1 MLPELPPKARQIAELIAAQPEPFVHKSITEVAEACDVSEGTIVSFCRRVGVRGFQELKIM 60 Query: 70 LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAK 129 LA+ L + +++ D + T IF + A+L R L A+ A LL +A+ Sbjct: 61 LARDLIEPVRLIQEDLHRGDDPATVTDHIFAAHAASLQETRRLLSMEALAEATRLLREAQ 120 Query: 130 KIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTK 189 +I +G+GSSA +A D + + + D +Q +S G V +SH+G T Sbjct: 121 RIEIYGIGSSAPIAQDLSYRLLQLGLAANAIVDSHVQAVSAGMTGPGVATVTVSHSGSTV 180 Query: 190 NLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVID 248 V +LA+ A I +T G +PLA + + E M SR+AQL +ID Sbjct: 181 ETVLATRLAQAAGARTIGITRLGKSPLAAHCEVLLYTVANETRYRPEAMSSRVAQLAIID 240 Query: 249 VLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L + L + L+ L E R+ Sbjct: 241 TLVSCCALTDTERSVGRLQHAARILSEKRY 270 >UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6A5_9CLOT Length = 282 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 135/276 (48%), Gaps = 7/276 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L K++ +LS +E +V E IL P + ++ +A E+ S TV R C+ +D Sbjct: 6 MSVLIKLRD-YRNLSAAENQVREYILKYPKKVLEYTVYELAKESFTSPATVVRLCKKIDI 64 Query: 61 RGFPDFKLHLAQSLANGTPYV-----NRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +GF K+ LA+ + ++DS + KI A+ T++ R +++ Sbjct: 65 KGFARLKVLLAEETKYFQDMKLNLLDTTTIEKNDSPHAIIEKITNIAVKTIEETRVLVNE 124 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + LL +A + F+G+G+S+ VA DA KF R V+ Q + +N Sbjct: 125 KQFMQVARLLQKAVIVDFYGVGASSPVAIDAQYKFMRIGKNVITYQLYDRQYVQAVNSDA 184 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIY 234 V ++IS++G TK ++++A + ++N V+A+TS+G L R A + + E Sbjct: 185 SHVGIIISYSGETKEMLKIAGILQKNGTPVVAVTSSGENSLNRIADYNLFVTAKETVFRS 244 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 M SR AQL +ID+L + + +++ + Sbjct: 245 GAMASRTAQLYIIDILYALYCSLDYDESIKKIQQTR 280 >UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor) n=2 Tax=Bacillus RepID=Q9K6Z8_BACHD Length = 284 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 3/278 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L KI+ +L +E KVA +L P+ + +A +AN S+ ++ RFC+ + Sbjct: 6 LLAKIEQELASFPAAETKVANYVLKHPELVPTMTTKQLAEQANASQSSIVRFCKRLGLES 65 Query: 63 FPDFKLHLAQSLANGTPYVNRN--VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 FP KL LA+ L Y+N + DDS K+ LD ++++ A Sbjct: 66 FPKLKLALAKELTRKEAYINSASLLETDDSPPILFQKVSSLNQMALDMATKAMNEQAFTE 125 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+ + +AKKIAFFG+G S D KF R + S D + DVV+ Sbjct: 126 AVEQMVKAKKIAFFGVGGSFTSCIDGQYKFMRLGFHSLASGDYHQMIPFITMMDEQDVVI 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S +G TK ++++A A+E + +I +T S+ + L R+A +++ + E + S Sbjct: 186 CMSTSGNTKEVLDIADYAKERNVKLIGITASSRSALTRKAAVSLLIPDIEVQQRIGSIAS 245 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R +QL VID L R G+ D ++ +E R Sbjct: 246 RTSQLNVIDALYVSVFHRIGSDLLDAFDASRKKTEEKR 283 >UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_LISW6 Length = 283 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I+ L L SE+K+ + +LA+P+ +SI +A +A+ S V RFC+S+ + Sbjct: 5 SIINRIEGILHDLPTSEKKIGQTVLANPEFTTTASIHKLAQKADASGAAVVRFCKSIGLQ 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FP+ K L+ LA ++ ++ + T K+ + M T++ LD++ + A Sbjct: 65 SFPELKRQLSLDLAQPQKIGYYDIEPNEDFHTITDKLVSNMMQTMNDTASQLDETKVLTA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 DLL A I +G+G+S VA D K+ R V+ + D + M+ V + Sbjct: 125 CDLLGDADTIYTYGVGASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKRKSVFIA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLD-VPEDTDIYMPMVS 239 IS++G T +++L A+ ND VI+LT G L +A LA+ PE S Sbjct: 185 ISNSGETSEVLQLVDQAKLNDVTVISLTRFGNNKLKEKADLALETSRAPEAEIRSTATSS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R AQL V+D+L + + +K+ +EA R Sbjct: 245 RQAQLLVVDILFYYYASHHYDEMIQQIKQSREATNRFR 282 >UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM70_9ACTN Length = 283 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + ++++ LS ER++AE +LA P A +I+ +A +++ TV +F + + Sbjct: 5 TIRVRVRALESSLSDKERQLAEFLLADPHKASKMTISQIAQTLGMADSTVFKFTQKLGFE 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF DF+ LA + ++ ++ + + +FES++ +L + + I A Sbjct: 65 GFRDFRGELAAEGFDPEVSIHEHITHKSTPKQMAETVFESSIRSLTDTKELFSEQDIIHA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L+ ++ F+G+G S+ VA DA +KF R V Y D LQ M + D +L Sbjct: 125 AKLIEDCYQLTFYGMGGSSVVAADAYHKFLRTPKRVAYDADFHLQLMRASRSNGDDCALL 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH+GR +++A+ RE A I +TS +PL A + E + SR Sbjct: 185 VSHSGRCIQTIQIAEKLREVGASTIVITSNPSSPLTALADACLVTIAEETAYRSESLASR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++QL ++D L T +LK V+E + +R Sbjct: 245 ISQLALVDALYTIVMFSDENAASRSLKEVREVISATR 281 >UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC5_9ACTN Length = 283 Score = 236 bits (602), Expect = 7e-61, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 127/273 (46%), Gaps = 12/273 (4%) Query: 15 SKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSL 74 S +ER V + A P + S+ +A S ++ RFC+ + G+ +F+ L L Sbjct: 17 SPAERNVIAYVSAHPHEVVGLSVRGLADVTFSSPSSILRFCKRLGFAGYKEFQRELIAEL 76 Query: 75 A---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKI 131 A + +++ DDSVE GK+ +S + T++ +LD + + R L +A+ + Sbjct: 77 ALLGDKKDVALEDISMDDSVERIVGKVMKSNVRTIEATARTLDYTVLERCAARLKRARAV 136 Query: 132 AFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNL 191 FG+G+S VAHD K R + DD Q + N +GD+ + S++G T+ + Sbjct: 137 NLFGIGASRLVAHDLAQKLMRVDKECRLYDDWHDQLLCAKNMHEGDMAIAFSYSGLTQEV 196 Query: 192 VELAQLARENDAMVIALTSAG--TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDV 249 ++ A+ ++ V+A+T + LA A + + E M SR+AQL V+D Sbjct: 197 LDCTAEAQRHNCPVVAVTKVDGSSKLATMADAVLGVAASEPLVRSGAMASRMAQLMVVDA 256 Query: 250 LATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 L + +R +K++ +KQ Sbjct: 257 LYAAYVASDY-------ERATHVIKQNYIEKQE 282 >UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JBJ8_FRASC Length = 299 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 126/276 (45%), Gaps = 1/276 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 + +++ L L+ S RK+ ++IL P +H ++ +A S TV RFC+ + +GF Sbjct: 24 IAHLRACLPTLTPSGRKIGQLILDDPREIVHLTVTDLADRTGTSVATVVRFCQDLGLKGF 83 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K+ LA ++ V DS + KI S + L ++D++A RAVD Sbjct: 84 ADLKIRLAGEAIPPERGLHEAVTHADSPATILEKILHSTESALSETTRTVDRAAFTRAVD 143 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L A ++ G G+SA +A DA +F + D +Q ++ + IS Sbjct: 144 ALQCADRVLLIGAGTSAPLAQDAAYRFRTLGLLAEAPADAHVQHVAARLLPPASACLAIS 203 Query: 184 HTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 HTG+T+ + A AR A IALTS +PL R A +A+ E M SR+ Sbjct: 204 HTGQTRETLAGAAAARAAGATTIALTSFFRSPLTRLADVALVAGSSETNYRVEAMSSRII 263 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 TV+D L L + + + + E L E R Sbjct: 264 HATVLDALFVAVHLAQPDRAQKAQELTAEVLTEHRI 299 >UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XRD4_9DEIN Length = 264 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 126/266 (47%), Gaps = 3/266 (1%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 ++ + ++A+ +L + D I+ ++ +A A SE +V RFCR + +GF DFKL LA Sbjct: 1 MTPALERIAQYVLHNADQVIYQTVIEVADAAGSSEASVVRFCRDLGFQGFQDFKLALASD 60 Query: 74 LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAF 133 L +P + + S +S ++ +A LD R ++ + V+ + +A++I F Sbjct: 61 LVT-SPVILPKQEKPTSAQSTADYVYNTARQVLDETRRLMNVDLLEEVVERILKARRIDF 119 Query: 134 FGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVE 193 +G+G++ A D K R + D +S D+ IS +G + + V+ Sbjct: 120 YGVGNAGTTAQDFAQKLQRLGCAAIAYPDPHSAAVSAATLGPKDLAFGISVSGSSIDTVK 179 Query: 194 LAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLAT 252 + A+ A +A+T A +P+ R A + PE M ++++QL ++D L T Sbjct: 180 ALEQAKLAGAYTVAVTRGARSPITRFADAVLLTSAPESPLTRGSMGAKISQLMLLDFLFT 239 Query: 253 GFTLRRGAKFRDNLKRVKEALKESRF 278 LR K + L + A+ + + Sbjct: 240 RTALRH-PKGAELLSKTAAAVADRSY 264 >UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=Bacillales RepID=C4KZ09_EXISA Length = 301 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 3/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L KI E ++ E+K+A+ IL+ + + +A + +VSE ++ RF R + Sbjct: 22 SLLTKIDLAKEDMTAVEKKIADYILSHSTLIPNMTTKELAQKTDVSEASIVRFARVVGID 81 Query: 62 GFPDFKLHLAQSLANGTPYVN--RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 F FKL L + LA + + + D+ K+ A ++ ++DK + Sbjct: 82 SFKAFKLALVKDLAVTETTLTDFNVLQQKDTPYDSFQKVIHVNKAAIEACAEAMDKRELE 141 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AVDL +A ++ F+G+G S+ A DA KF + S D + DV Sbjct: 142 HAVDLFARASRVIFYGVGGSSTAAIDAQYKFTKLGYAATTSPDFHYMLSLIPHLGKSDVF 201 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 V IS +GRTK+++EL + A++ VIA+T+ +PL REA + + E + Sbjct: 202 VAISTSGRTKDVLELVRFAKKKRVPVIAITNLDKSPLYREADVRLCTPNVESDFRIASIA 261 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR+ QLT+ID L G R+G D ++ + + R Sbjct: 262 SRMTQLTIIDTLYMGLLHRKGEGLIDRYAEARDEMVKLR 300 >UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4M2_9CLOT Length = 282 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 139/279 (49%), Gaps = 2/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + I+++ LS S++ VA+ IL +PD + +++ +A VSE TV RF ++ Sbjct: 4 QIFSLIRTKYNTLSSSQKDVADYILTNPDKVMMNTLNEIAAACRVSETTVLRFLHKLNYN 63 Query: 62 GFPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + F+++L Q L+ + V +V D+ + KI S ++++ R +D +++ Sbjct: 64 SYQLFRINLTQELSKDNQETVYDDVGFQDTEDEIIDKIIHSTVSSITDSRQIIDPASVKA 123 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ + A++I G+G+S +A D +K + + V ++D + + +++ Sbjct: 124 VVEKIAGARRIVVAGVGASGFIAQDLYHKLIKLGLNAVCANDPHIMNILATGLDQNTILI 183 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 L SH+G ++ ++++A +A+E V A+TS A + LA +A + E M S Sbjct: 184 LFSHSGESREVLDMAAIAKERRCQVCAVTSYAKSTLANQAGYLLCSSSRETMFRSDAMTS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+ Q+ +ID+L + G + + A+ +++ Sbjct: 244 RIVQMVIIDILYVSLVIALGDGILPQIHSSRLAVAKNKI 282 >UniRef50_Q184N2 Putative phosphosugar-binding transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q184N2_CLOD6 Length = 283 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + K++ E L++ ++K+A+ IL + + S++ +A + S ++ RF R M Sbjct: 1 MSCILKLKQIYEDLTEVDKKIADYILNNTEAISKLSVSELASNSKTSTASIVRFSRKMGY 60 Query: 61 RGFPDFKLHLAQSL-ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF D K+ +A+ L Y + N D +++S KI + T++ R +K I Sbjct: 61 SGFGDLKIEIAKDLMGKENEYTYVDENYDCNIDSVINKITNKNIETINQTRLLNEKDIIK 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV+ + +AK + FG+G SA VA D K R N S D Q M N D+ Sbjct: 121 EAVEQIIKAKNVYIFGVGGSALVALDLQMKLLRINKQAFTSLDSHTQLMVSSNVDKEDIA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 + IS++G +K +++ + A+ VI +T L++ + L + + E + Sbjct: 181 IAISYSGESKEVIKSIENAKLKGCKVICITKYSDNHLSKISDLKLVVPNIEKRLREGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 SR+A LT+I + + ++NL ++ L+E++ LN+++ Sbjct: 241 SRIAMLTLI-------DIIYISIIQENLNEAEQKLQETKRILDYLNINN 282 >UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNS3_LACPJ Length = 292 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 3/278 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L I+S +LS ++RK+A+ I+A P SI+ +A VS TV+RF + + Sbjct: 12 VLTLIRSYYPNLSVTDRKIADYIIADPIKTAAQSISDLAAAVGVSTATVSRFVKRISFSS 71 Query: 63 FPDFKLHL--AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DF L A+ + ++V + + + F S ++LD + ++ + R Sbjct: 72 FRDFSRELTAAEPIEQTNAEAFQDVEKQTTFKGIAESTFNSIRSSLDQTSQVMTEADLKR 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+LL A+ I F+GLG SA A D +KF R +P ++ D +Q M + DV V Sbjct: 132 AVELLLNARSIGFYGLGGSAVAALDGYHKFVRTGIPCAHNSDYDMQLMQAAQMNASDVAV 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 +ISHTGR + +++ VIALTS G +PLA+++T+A E + S Sbjct: 192 VISHTGRNQQTLQVLATLTSQSVPVIALTSFGNSPLAKDSTVAFISVAEEINYRSEGLTS 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQ+++ID L + + ++L RV+EA+ ++R Sbjct: 252 LIAQMSIIDSLFLMTAVHGNIEMAESLGRVREAISQTR 289 >UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDH7_9ACTO Length = 342 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 7/282 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L ++++ L L SER++AE IL P ++A +A + S TV RF + + Sbjct: 11 TVLVRVRAALPGLRPSERRIAEAILDDPHATAGLTVAELAAACDTSTTTVVRFYQRIGYG 70 Query: 62 GFPDFKLHLAQSLANGT------PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 + D +L L + P + +++ DD+++ K+ + ++ LD+ Sbjct: 71 RYKDLRLDLTREATREQLETANLPAASGDIDRDDTIDDIIAKVAANETLSIADTAEILDR 130 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 A+ RAVD + A+++ FG+G+S V D K R + D + + + Sbjct: 131 DALARAVDCVLNARRVDSFGVGASGFVGLDLQQKLTRIGRTALSWLDTDAAWSAAVTLDE 190 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIY 234 V + ISHTG T VE +A A IA+T+ LA A + +T E Sbjct: 191 QCVAIAISHTGTTAATVEFLAMAAAEGATTIAITNHDNTALAETADVVLTTAARETRFRS 250 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + SR+AQL V+D L TG L++ A+ Sbjct: 251 GALGSRIAQLMVVDCLFTGVARASYDASMSALRKTYAAVHRK 292 >UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulator TM_0326 n=7 Tax=Thermotogaceae RepID=Y326_THEMA Length = 280 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 155/281 (55%), Gaps = 4/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANV-SEPTVNRFCRSMD 59 M+++++I+ + + + +E+K+A+ IL+ P I SSI+ ++ +A V SE +V +F + + Sbjct: 1 MDVIQRIKEKYDEFTNAEKKIADTILSDPKGIIESSISDLSEKAGVKSEASVVKFYKKLG 60 Query: 60 TRGFPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F FK+ LAQS++ V +V+ +D ++ T KIF++ + + + LD +I Sbjct: 61 LNSFQQFKVLLAQSISRAPLEIVYEDVSSEDDTKTITEKIFKATVRAILDTLNWLDIDSI 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 R VDL A++I F G +SAAVA DA +KF R ++S+D + S D+ Sbjct: 121 ERTVDLFKNAQRIIFIGFAASAAVAFDAFHKFTRIGKNCLFSNDEHIIAAILATASPSDL 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 +V ISHTG T ++V A+ A+E V+ +T + + LA+ + + + + E M Sbjct: 181 LVAISHTGETISVVNFAKKAKEMKMPVVTITGNRKSTLAKYSDVVLATNTKETKIRTDAM 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+ QL ++D + T R + +NL + + A+ E ++ Sbjct: 241 TSRIVQLVILDTIYTLLAARD-PRAIENLNKSRLAVSELKY 280 >UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ALE3_SEBTE Length = 282 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 3/275 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ KI S + + SE KV I +P++ + +I ++ + E T+ RFC+ + Sbjct: 7 NLFNKINSLKKSFTASETKVFNYIEKNPESVVRMNIRELSNAIDTGETTIIRFCKKTGFK 66 Query: 62 GFPDFKLHLAQSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+ DFK+ L SL+ ++ D++ S I+ ++ L ++ ++ Sbjct: 67 GYNDFKISLISSLSKEKQSNKYKIDILADENYNSIAEGIYNNSFNVLKDTLSLINNEILD 126 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + ++L+ AK I F G+G S A DA KF R V D L +M+ DV+ Sbjct: 127 KCINLINNAKHIEFIGIGHSNLTAQDAKYKFLRIGKSVASHSDPHLFKMAASISDREDVI 186 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + IS TG T+ +++ Q A+ A IA+T+ T + + A + E+ Sbjct: 187 IGISQTGETREVIDSLQSAKVRGAKTIAITNNDKTEITKYADYVLLNGFNEELLETGSFS 246 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 R++QL +I++L G + K + +A+ Sbjct: 247 ERISQLFIIELLYLGVLSKNKDKAMELKDLTIKAV 281 >UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n=3 Tax=Vibrionales RepID=A5L3V2_9GAMM Length = 282 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 6/282 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + K+++ L LS S+ VA +L P S +A VS+ T+ +F + + Sbjct: 1 MKGIAKVKALLPKLSPSDSLVARYVLDHPQQVKQLSSPELAKAVGVSQSTIVKFSQKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPY----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 +GF + K+ L QS + P ++ + DS ++ K+ S +L+ + Sbjct: 61 KGFSEMKVKLYQSDMSYQPVSQRGIHGTITRKDSPDTVMEKLLASKTQSLERTVLLNEGE 120 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 ++ A DLL A KI G+G+S+ VA D K + V D +Q + + ++ Sbjct: 121 QLSNAADLLHLANKIQISGVGASSLVAKDFAYKLMKIGHAVHAEPDAHIQIANAASLTEN 180 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM 235 DV+V IS++G+T+ +V++AQLAR A VI ++ + + L + A + + E+ Sbjct: 181 DVLVAISYSGKTREVVKVAQLARSKKAKVIVISQLSPSALDKYADIKLISAADENHIRSS 240 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + +R +Q + D+L T + + +++ K A+ E + Sbjct: 241 SITARDSQFYITDLLFIALTQQ-EEQADQLIEQSKSAVAEFK 281 >UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C448 Length = 286 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 135/283 (47%), Gaps = 8/283 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L+ I L L++++RK+A+ IL +P+N ++ S +A +VS+ + +F + + Sbjct: 1 MTLLDIITYSLPRLAENQRKIAQFILENPENVLNLSSQQLAEILDVSQSAIVKFSQKVGV 60 Query: 61 RGFPDFKLHLAQSLANGT-------PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +G+P KL L++ + ++ + DD++ K+ ++ + Sbjct: 61 KGYPALKLALSEIIGRQQLKDGAPHSALHNRIAPDDNLMVVAQKLAMEKNHSITETTKLI 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D R V+ + Q++++ G+G S A D K + + + D +Q + + Sbjct: 121 DFKQFERIVERIDQSQRVQIVGIGGSGLTAKDLSYKLQKIGITTLVESDHHVQIAAALTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTD 232 + DV ++IS TGR K+++ A +AR+ A VIA+T +PL + A + ED Sbjct: 181 NTHDVQIVISFTGRRKDMLTAANIARKQGACVIAITRDCDSPLGQLADYVLESIAEEDEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR AQ T+ D++ RR AK + + + + + Sbjct: 241 RSSSISSRTAQNTLTDLIFMALLQRREAKAKSLVMNARVVINK 283 >UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=Bifidobacterium RepID=B7GUA9_BIFLI Length = 289 Score = 233 bits (595), Expect = 5e-60, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 5/284 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 + + E+I L +ER VA+ I + A ++ MA A+VS+PTV RF R + Sbjct: 5 VGIRERIDHVYPSLRPAERAVAQYIRDHIEEAADLTVGQMADIAHVSQPTVIRFARKLGF 64 Query: 61 RGFPDFKLHL----AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ + + L A+ P ++N D + K + A A +D + +LD Sbjct: 65 GGYRELRYVLRHPAAEHKVTFNPLDGFDLNPWDGEDEIPSKAADGAKALIDELHSALDPK 124 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 A +AV LL +++ I FG+ +S A D K + + D LQ++ + + G Sbjct: 125 AYRKAVALLAESEFIDIFGVENSLTPAMDLFTKLGYLGLTCRLNTDAYLQQIGAGHLTHG 184 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 V V SH+G + + V+ +LA+ + A IA+T+A G PLA A + + T Sbjct: 185 AVAVAFSHSGSSADTVKALRLAKSHGAKTIAITNAIGAPLASWADVTLLTGRDSHTIYGN 244 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 + S +A ++D+L G L +F L +++ F+ Sbjct: 245 AIFSCVADTALVDMLYMGVILSDYGRFSTALDESGRMIRDRVFE 288 >UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=Bordetella bronchiseptica RepID=B3EUN5_BORBR Length = 303 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 148/281 (52%), Gaps = 1/281 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L+++Q + LS +++ V VIL P A+ +++ +A +A VS PT+ R CRS Sbjct: 7 NLLQQMQERSPELSPAQKMVVRVILDDPQAAVLATVEQLAQKAGVSMPTIVRTCRSFGFV 66 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 DF + LAQS A + ++R+V DD V + K+ +A+++L + LD +++ Sbjct: 67 SVRDFMVALAQSYAATSSLLHRSVLADDGVADVSSKVIHAAISSLSELDRDLDVVILDKV 126 Query: 122 VDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + + QA++I + +G +S +AH+ ++ FR + D+ Q MS V Sbjct: 127 AERVAQAERIDCYSVGAASTFIAHELHSRLFRLGLRSNTFFDMHQQLMSASTLGAKGVAF 186 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +ISH GR +E A+ ARE+ A V+ALT GTPLA A L + + P+D + ++ Sbjct: 187 VISHVGRMPYTLEAARYAREHGATVVALTQPGTPLAAAADLVLAVSGPQDPLRRVGTETQ 246 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 LA L VI++L + G L+ K+ L++ D Sbjct: 247 LAHLVVIEILMVRLAQKLGPVAVHGLQGFKQLLQQHGLDSD 287 >UniRef50_P26833 Uncharacterized HTH-type transcriptional regulator CPE0189 n=15 Tax=Clostridiales RepID=Y189_CLOPE Length = 279 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 3/278 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +LE++++ +KSE+ + E I + DN I+ SI+ +A E+ V E T+ RF + + Sbjct: 1 MGILEQLENPKFKATKSEKTLIEYIKSDLDNIIYKSISIIAKESGVGEATITRFTKKLGF 60 Query: 61 RGFPDFKLHLAQSLAN--GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF DFK+ LA+ ++N T +N +V+ D+SV K+ +S++ L+ +D + Sbjct: 61 NGFQDFKVTLAKEISNKKNTSIINLHVHRDESVTETANKMLKSSINILEQTVKQIDLDLM 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + DL+ AK++ F G+G S A D KF R V D + +D DV Sbjct: 121 CKCRDLIMNAKRVYFIGIGYSGIAATDINYKFMRIGFTTVPVTDSHTMVIMSSITNDDDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 +V IS++G TK +++ + A+EN +I LT + PL + + +T E + Sbjct: 181 IVAISNSGTTKEVIKTVKQAKENGTKIITLTEDSDNPLRKLSDYELTYTSAETIFETGSI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 S++ Q+ ++D+L T ++ + + A+ Sbjct: 241 SSKIPQIFLLDLLYTEVIKEMFSEAVEKKIKTTSAILN 278 >UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=Gammaproteobacteria RepID=C4L7F8_TOLAT Length = 292 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 1/271 (0%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 KI+ L LS +ER++AE +LA + +SI ++A + VSEP + + + + GF Sbjct: 13 AKIRMALPGLSNTERQIAEWLLAKGNVESKTSIKSVAEQLEVSEPLIVKLSKKLGFAGFR 72 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 + + L + L++ + + DSVES K+F +++ + R D I A L Sbjct: 73 ELRQALVEYLSSLPIDSEQEIEPTDSVESVLNKVFANSIQAMKEARSVADPILIANAAQL 132 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + AK + FG+G SAAV D +K R + D + M + DV+V+IS Sbjct: 133 IFNAKNVVIFGVGGSAAVCQDFEHKLLRIGILSRAYSDFHMMLMVSSQLDENDVIVVISQ 192 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G T+ L++ + A++ + VI +T+ + LA+ A AI + V+R+ Q Sbjct: 193 SGDTRELLKAVENAKQRHSRVICITNNDTSALAQLADYAIFSPAKGGILLGQNAVARIVQ 252 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 L ++DVL L+ K R+ L R ++ Sbjct: 253 LNLLDVLFIAILLQDHDKNREKLTRGSRVVR 283 >UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF6_9LACT Length = 292 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 152/283 (53%), Gaps = 7/283 (2%) Query: 2 NMLEKI-QSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 N LEK+ + ++ + +E+ +A+ + + ++ +++ +A + +SE T+ +F + + Sbjct: 4 NYLEKLLRPYIKSFNDTEKIIADHFIKLGHDVVNKTLSNLADDTGLSEATIFKFVKKIGF 63 Query: 61 RGFPDFKLHLAQSLANGTPYVNR-----NVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 GFP+FK+ +A + N N +++++DS + K+ S LD++ SLD+ Sbjct: 64 DGFPNFKISVASNFQNIEERKNELTVFSDISKEDSSYAIAQKLVYSNKLALDNLIGSLDE 123 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 IN+A++L+ ++ I FFG G+S+ +A D+ +KF R Y D +Q Sbjct: 124 ERINQALNLIYDSQTIHFFGQGASSVIALDSYHKFLRTRFLCNYISDYHMQLSYATKLGP 183 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 D V L SH+G T +E+A++ R N +I LT + T L + ++++ +D E Sbjct: 184 NDCVFLFSHSGETNETIEVARILRNNQVNIIVLTGNHHTDLVKLSSISFVVDSEESAFQS 243 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + SR+ LT+ID+L AK +D+L+++++AL ++ Sbjct: 244 ETLTSRILYLTIIDILYVALMYHDEAKNKDSLEKIRKALAVTK 286 >UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=Proteobacteria RepID=Q0BBX6_BURCM Length = 324 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 146/288 (50%), Gaps = 1/288 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ +I L ++ERKVA ILA A H+SI A+A +A VS TV RF +++ Sbjct: 37 LDIVARIAECAPELREAERKVAAYILADLARAAHASIGALARDAGVSVATVTRFAKAVGC 96 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 R + K+ +AQ+ A G ++ + S +++ L H L ++ + Sbjct: 97 RDVRELKVLVAQAAAVGQRFLVPSDAHPAEDASPASVVYDEIRVALAHNHQLLRNTSFDA 156 Query: 121 AVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A DLL AK + +G G S A+A + + RF PV D +LQRM S VV Sbjct: 157 AADLLAGAKMVYVYGQGGGSTALADELRFRLVRFGRPVASYQDSLLQRMVAATLSRDAVV 216 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 V +S +GR L+E +LA+ A +IA+T+ +PLA+ A I + E IY P S Sbjct: 217 VALSVSGRVPELLESCRLAKRYGATLIAITAPASPLAKLADHLIPVVAFETDFIYKPSTS 276 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R A + IDVL TG LR G R++L+R+K AL R + D Sbjct: 277 RYAMMMAIDVLVTGVALRLGDAGRESLRRIKHALDAHRGGGDRQPVGD 324 >UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=1 Tax=Listeria grayi DSM 20601 RepID=C2C2H3_LISGR Length = 282 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 3/278 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I++ + L KSE+KVAE++L P A SSI ++A A+ S + RFC+S+ + Sbjct: 5 SILNRIETLFKDLPKSEKKVAEMVLQDPAFASASSIHSLAKRADTSAAAIVRFCKSLGLK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FPDFK L L++ + ED+S + + K+ + TL+ + ++ I Sbjct: 65 SFPDFKRQLYSELSSPVASGYYDFEEDESFDGISQKLLANYFQTLNDTAGQISEAKIRTV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L +A I +G+G+S VA D K+ R VV S D + M+ G V Sbjct: 125 SEQLEKADTIYTYGVGASWLVAQDIAQKWLRAGKQVVISQDEHVLAMAFAARKSG-VFFA 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLD-VPEDTDIYMPMVS 239 +S++G T +++ELA+ A++N+ VI LT G + L +A + PE S Sbjct: 184 VSNSGETTSVIELAEQAKQNNLTVIGLTRFGPSKLKAKADFLLETSRAPEAKFRSTATSS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + AQ +IDVL + R + + ++ ++A R Sbjct: 244 KQAQFFIIDVLYYHYVSRHYDQMIEQIRESRQATDRFR 281 >UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y2D5_LEPCP Length = 616 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 140/266 (52%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ +++ L LS SER VA +L++P + SIA +A VS PTV RFCR+M +G Sbjct: 337 LLDDVRAALPRLSTSERLVAGDLLSAPRAWMSDSIARIADRCGVSTPTVMRFCRTMGFKG 396 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 DFKL L L+ T +R V D I ++++ L +R L A +AV Sbjct: 397 LADFKLRLGAGLSGSTKVAHRPVRAADPTAERMATILNNSISALIELRDRLHPQAFEQAV 456 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A++I +G+G++A A +A +KF R + VV D LQ ++ DV++++ Sbjct: 457 KLLANARRIEVYGVGAAALAAEEAQHKFGRLGLQVVARTDSQLQNVTAAFLGPDDVLLVL 516 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S++G + E AR + VI + + LAR + + + +D PED +PMVSRL Sbjct: 517 SNSGAVDPVNEAVMRARRSGTRVIGMCPQRSDLARLSDVILPVDHPEDLQALVPMVSRLM 576 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKR 268 Q ++DVL T L+R L R Sbjct: 577 QTVIVDVLVTDLALQRRDHINAALVR 602 >UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C511 Length = 286 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 131/279 (46%), Gaps = 4/279 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN +I+ + + +E+ +AE IL + + + S A+ + N S + RF + + Sbjct: 9 MNAYIRIKEYNDSYTATEKLIAEYILEN--DILQDSAQALGEKTNTSAAAIIRFSKKIGF 66 Query: 61 RGFPDFKLHLAQSLANG-TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +GF D K++LAQS V+ +D++ + K M T+ ++ + Sbjct: 67 KGFSDLKMNLAQSTKEEKQQEVDLIFEPEDNISTLVEKGCRLNMNTVLKTYQLINIDTLE 126 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 ++DLL A I FG+G S+ + D K R V+Y+ D+ +Q + D Sbjct: 127 ESIDLLNNASTIYLFGVGGSSVIGLDIYQKLMRIGKKVIYNADLHVQMTFAQSMDQNDAA 186 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 ++IS++G T LV++A++ E VI++T P+++ +T ++ + E + Sbjct: 187 LIISYSGSTTGLVDVARVLHEKQIPVISITQINANPISKLSTYSLKVPSEEKALRIGAVS 246 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR++ + D+L G + + + NL K+ + + Sbjct: 247 SRISSFVITDLLYYGVFKKNFEEHKKNLIDSKDNVSILK 285 >UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillaceae RepID=Q03CI3_LACC3 Length = 280 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 144/277 (51%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L ++Q +LS E+K+A + A PD+A ++I+ ++ VS T++RF +++ Sbjct: 3 DFLVQLQIYKPNLSGQEKKLAAYLQAHPDHASQANISELSQLTGVSTATISRFAKALGYT 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F ++ LAQ+ + ++ DSV++ KIF S + L +LD A+ +A Sbjct: 63 NFQALRMALAQTSPEDDHALFAELSPKDSVDTLAQKIFTSNIDALRTTLANLDTDALTKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V +T A+ + FGLG+S VA D +KF R +PV Y+ D +Q M+ + D ++L Sbjct: 123 VKWITHAEHLGLFGLGASNLVALDGYHKFLRTAIPVAYAADYHMQLMAATHLGPRDAMIL 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 SH+G K+ + LA+LA++ +I +T S + L + A A E + + Sbjct: 183 TSHSGEDKDAIALAELAKKQQVPLIVITGSPTSRLVKMADAAFVAVAEESRYRTEALHAL 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +A+++++D L ++ ++ ++V+ + +R Sbjct: 243 IAEISIMDTLFMISAIKTDSQTAPLFRQVRATIDATR 279 >UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9S0_9ACTN Length = 282 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 5/271 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++ + +S SE+++ IL P+ + +I +A VS T++R R + Sbjct: 5 SLLVLLKENKDRVSTSEQQIITYILKKPEAIVGVTIHELAQMTFVSAATISRLLRKLSLG 64 Query: 62 GFPDFKLHLAQSLANGTPYVN---RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ +F+ +L LA+ ++N DS + KI + ++ + I Sbjct: 65 GYKEFQQYLIYELASMKTSRQSSIEDINPKDSTKQIMFKIMRKTIESITLTEKLNNPKTI 124 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + +L+ A+ I FG+GSS A D KF R N+ S D +Q ++ N SDGDV Sbjct: 125 DSCAELIHNARHITIFGMGSSLLSAQDLQYKFLRANIDCTLSADWHMQLIAANNMSDGDV 184 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTP-LAREATLAITLDVPEDTDIYMP 236 + S++G T + A+++ VIA+T S + L R A + + + E Sbjct: 185 AIAFSYSGVTPETLRCVHAAQDHGGKVIAITRSVNSTELVRHADIVLYVASTEPLLRSSA 244 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLK 267 SR+ QL ++D L + + + ++ Sbjct: 245 GTSRITQLMIVDTLFSTLVNKHYDVYATAIE 275 >UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2J8J9_FRASC Length = 293 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 2/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +LE+I++ LS +E++VA +LA P IH S++ +A + S TV RFC+S+ RG Sbjct: 18 VLERIRALSASLSSAEQRVARQVLADPVAMIHQSVSELAQVSGSSPATVVRFCQSLGLRG 77 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + + KL L + + V+ D + GK+ A + L +D + Sbjct: 78 YQELKLALIRETLPVERQLVDEVSAADGPDEIAGKVLGGAASALTEAARGIDGGVLAAIA 137 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 DL+ A + F +G+SA +A DA + V ++ D +Q ++ + GD+ V + Sbjct: 138 DLVVAAPRTLFVAVGTSAPLAMDAAYRLTTVGVDARFAGDAHVQHVTARMLAAGDLCVAV 197 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG T + + A + A A+TS A +PL A+ + E M SR+ Sbjct: 198 SHTGSTAETLAAMRAAVDAGAHTAAITSFARSPLTELVRHAVVVGSRETAYRIEAMTSRI 257 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L+V+D L +R + L + + E R Sbjct: 258 VHLSVLDALFALVVVR-SPRSPGALAMTADVIVEHRM 293 >UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I531_9CLOT Length = 284 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 136/275 (49%), Gaps = 6/275 (2%) Query: 12 EHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLA 71 L+K+E K+ + I +++I+ ++ +A V E TV RFCR + R F +FK+ +A Sbjct: 10 SELTKAENKICDYIEEYMNSSIYMTVTEIANNCGVGEATVTRFCRKLGFRSFLEFKMTMA 69 Query: 72 QSLANG-----TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 Q N + V+E+DS+ + K +E + +L+ +D S I D+L Sbjct: 70 QEFKNSGYDNEDIIESEVVSENDSLGEFVKKFYEINVNSLEETLKKIDYSMIEEISDILV 129 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 +AK+I+F G+G S +A DA KF + + D M +GDV+ +IS++G Sbjct: 130 KAKRISFTGVGHSGIIAEDAYYKFMKIGLICNCYRDSHTLVMMASLMKEGDVLFIISNSG 189 Query: 187 RTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLT 245 T+ + A++AREN+ VI++T + + LAR + + E R++Q Sbjct: 190 NTEEINIAAEIARENNVKVISITENLLSKLARVSDYVLNYTDQEIKIDMESFGIRISQNF 249 Query: 246 VIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +ID++ T + + + ++A+++ + Sbjct: 250 LIDLICTNVIRKNKEIAVVSKSKTEKAIEKLNIKR 284 >UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=A0JVW9_ARTS2 Length = 309 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 146/290 (50%), Gaps = 14/290 (4%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L +I +L +L S R+VAE +L SP+ A +I+ +A+ A V E TV+RF + + Sbjct: 9 GLLHRISGRLPYLPPSLRQVAEAVLKSPEQAQTMTISELAVAAGVGESTVSRFVKELGID 68 Query: 62 GFPDFKLHLAQSL----------ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRH 111 G+ L LA++ + V VN D+ GK+ S++ +L Sbjct: 69 GYKSMLLGLAEATFISKAATSARTADSEVVYEGVNRGDTAAEIAGKVERSSVQSLRRTGQ 128 Query: 112 SLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCM 171 D AI RAVDL+ + + F +GSS+ A +A+ +F R + D +Q M Sbjct: 129 RQDVEAIQRAVDLIDASNTVIFSCMGSSSIAAEEAVMRFTRAGKKCMLYRDTTIQVMLAA 188 Query: 172 NCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITL-DVPE 229 GD+++ IS +GR+ +++ LAR+ A IA+T A G+PL A + + VP Sbjct: 189 IIEPGDLLIGISDSGRSTPIIDAMHLARQRGAATIAITGAEGSPLRNYADVVLYTATVPS 248 Query: 230 DTDIYM-PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKE-ALKESR 277 ++Y + S+ QL VID+L + R ++LK+ + A+++SR Sbjct: 249 GGELYGESVTSKWGQLLVIDILYATYASRHYDATVEHLKQTYQSAIRQSR 298 >UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R285_BRAHW Length = 285 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 135/285 (47%), Gaps = 3/285 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN I+ + E SK+ +K++ IL++P I + ++ VS +V RF + + Sbjct: 1 MNAYLIIRDKYEDFSKAYKKISNYILSNPKEVIKLTALDISKNCGVSSASVVRFAKDLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN--VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G + K+ +A + N N ++ DD+VE KI ++ + + LDK A+ Sbjct: 61 KGLDELKISIASKNGDDDNKYNINTIISADDNVEELCNKIMLLIKSSNEDFFYQLDKEAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +A L+ A+ I G+G+S+ A+D +K R N + +D L ++ DV Sbjct: 121 EKAFKLIRNARNIYMLGIGASSLSAYDLFHKLKRANFNAFFYEDAHLNAEFFNYLTEEDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 V+ S++GRT ++ ++A A +IA+T L++ A + IT+ E+ + Sbjct: 181 VIAFSYSGRTNEVIYPVKIASSKKASIIAVTRKKTNNLSKMADVLITVPNNEELTRMGAI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 S+ + L V D+L G + ++NL +E + D + Sbjct: 241 TSKYSSLIVSDLLYFGAIQKDFENIKENLINTSILTRELKLDDEE 285 >UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=Q7MD38_VIBVY Length = 278 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 73/273 (26%), Positives = 130/273 (47%), Gaps = 7/273 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++S +E SK R VA+ IL + + +I +A SE TV R CR M + Sbjct: 6 NLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DF++ LA L+ ++ D +SA+ +L +D+ ++ R Sbjct: 66 GYSDFRMALAVDLSQTESRQQNHIEGD-----ICDVSAQSAVDSLQDTAKLIDRKSLARI 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ + QA+ I G+G+S+ V + R + +D L MS S GD+ Sbjct: 121 VERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G TK ++ A LA + D V++LT+ +PL+ +T + PE S+ Sbjct: 181 VSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASK 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 + L ++DVL L +++D+++ E + Sbjct: 241 VGALLLVDVLVNSL-LESYPEYKDSVQETAEVV 272 >UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU66_9CLOT Length = 285 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 128/281 (45%), Gaps = 4/281 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+S + L++ E+KVA+ +L P + +I ++ V + TV RFCRSM+ Sbjct: 5 NLLISIRSCYDRLTRLEKKVADYVLQHPQEVVKMTINELSNSCGVGDTTVFRFCRSMNVG 64 Query: 62 GFPDFKLHLAQSLANGT---PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ DFKL LA S N+ + + ++ ++ SLD AI Sbjct: 65 GYQDFKLALALSSNVNDMLDSKGEFNLAQSHDLHELAQQVSGVFTDAVNETLSSLDYDAI 124 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +R V+ + A+ + FG G+S A N+ R + Y+ D+ +Q S + V Sbjct: 125 SRTVEAILNARSVHLFGFGNSGVSALMMQNRMMRILPNIFYTSDVHMQLTSAATMQEDSV 184 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 ++ ++G TK+ + +AQ+ E A + +T TP A A + + E + Sbjct: 185 AIIFCNSGITKDSIRIAQMTHEAGAFTVFITKFMQTPAAPYADVLLCSGATEGPIQGGSI 244 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +Q+ ++ +L + R + ++N + A+ E + Sbjct: 245 SGVASQMYIVMLLYSELFRRMETRAQENKIKAAHAIAEKKL 285 >UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=Ralstonia pickettii RepID=B2UF98_RALPJ Length = 287 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 148/280 (52%), Gaps = 1/280 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +++QL LS +++ VA +IL +P+ ++ S+ +A+ A VS PT+ R C+++ G Sbjct: 8 LLNALRAQLPALSPAQQGVARLILDAPELSLEQSVETLAVRAGVSMPTIVRMCQALGFEG 67 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 +FK LA LA+ P + +V D K+ + A L +R SL + ++ A Sbjct: 68 LREFKATLAAELAHAQPTLPGHVGRADPPALVASKVIDGATRALAKLRESLSTTQVDAAA 127 Query: 123 DLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + + +A+++ + G+ S+ +A+D + R + D LQ +S DVVV Sbjct: 128 ERIARARRVDCYAAGAASSFMANDMQARLMRLGLASNAYFDAHLQLVSAAMLGASDVVVA 187 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH GR L+E A E A VIA+T AGTPLA A +A+T+DVPED + + + L Sbjct: 188 FSHVGRMPYLLESIAYAAEQGACVIAITQAGTPLAERAQIALTVDVPEDAVMRVGTEAYL 247 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 LTVI++L T RR R ++ ++ L E D+ Sbjct: 248 VHLTVIEILMTCVAQRRDEMVRSRMRAIQRLLTERSVDRP 287 >UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBK7_9GAMM Length = 271 Score = 227 bits (578), Expect = 4e-58, Method: Composition-based stats. Identities = 106/270 (39%), Positives = 170/270 (62%), Gaps = 1/270 (0%) Query: 10 QLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLH 69 L LSK+E +A ILA PD A++S+ A +A A VS+P ++RFCR++ FPDFK+ Sbjct: 1 MLPSLSKAESSIARAILADPDAAVNSTTADLARIAAVSDPMISRFCRTLGCSSFPDFKVR 60 Query: 70 LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAK 129 LA+SL + +++ V++ D Y K + A L+++R L + I + V L ++K Sbjct: 61 LAKSLVSKASFISEAVSKGDDAALYIEKRINANQAALEYIRSKLKPAIIEQTVAALGRSK 120 Query: 130 KIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTK 189 +I FG+G +AA+A DA +K FR +P V +D ++QRM+ + VV++IS TGRT+ Sbjct: 121 RIEIFGMGGAAAIAKDAQHKLFRLGIPTVAYEDHLMQRMAAAAADENTVVLVISFTGRTR 180 Query: 190 NLVELAQLARENDAMVIALTSAGTPLAREATLAITL-DVPEDTDIYMPMVSRLAQLTVID 248 ++E+A +A+ + A +IA+T+ +PLA+ A + IT D EDT IY+PM +R+ LT+ID Sbjct: 181 AMIEIADIAKNSQATLIAITNPKSPLAKLADITITSGDEIEDTTIYVPMTTRIIILTIID 240 Query: 249 VLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +LATG L +G + LK +K +L ++ Sbjct: 241 ILATGLALTQGPAIDEKLKTIKHSLDNTKV 270 >UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XGH5_VIBHA Length = 296 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 131/273 (47%), Gaps = 1/273 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+ ++ L+++E+ +AE L +SI +A VS + + + + Sbjct: 19 QVIPNIRMRMPSLTRTEQSIAENFLKPHFMQKSTSIKEVAERLGVSTALIVKVSKKLGFS 78 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K L + + + + DDS E K+ ++++ L + + +D + ++ A Sbjct: 79 GFKQLKDALNAHHHSDSYAPSEQLQPDDSCEQIVTKVLQNSINALTEILNFVDANMVSAA 138 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + + A+ I + G S + D +K RF + D L MS S+ DVV++ Sbjct: 139 AEAIINARNIELYAAGGSNIICEDFQHKLLRFGIRASVPRDRHLMLMSASVLSEKDVVLV 198 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH+G+T +L++ +LA+++ A +I++T + L++ + + + + ++R Sbjct: 199 VSHSGQTVDLMDAVRLAKQSGATIISITNNFHAELSQLSDYPLYAPASPEPLLGKNGIAR 258 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 L +L +ID L + + +NL++ +A+ Sbjct: 259 LVKLAMIDSLYATIASKIPDQAEENLEKTTKAV 291 >UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=Rhizobiaceae RepID=A6UIG8_SINMW Length = 287 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 152/288 (52%), Gaps = 2/288 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ +Q + LS+SE ++A+++L + A+++SI +A +A+VS PTV RFCR + Sbjct: 1 MDIFATLQEEKGRLSQSENRIADILLNDFEFAVNASIIELAGKADVSPPTVTRFCRRLGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFK+ LA++ G Y+ + I A L + SLD +AI R Sbjct: 61 ESFSDFKVQLARTPYVGMRYLKPEPKSQE-PGDVAQDIITKAQNALLLLHRSLDLAAIER 119 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A D L QA+ I FG G +S+ +A + N+ FR + + S D +Q M DV+ Sbjct: 120 AADQLAQAEMIYAFGSGGNSSMIAGEFQNRLFRLGMRITSSSDHSMQMMMAAAARPADVI 179 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 V S +GR LV LARE IALT +G+P+A+ A + + +D+PE +IY P + Sbjct: 180 VGSSFSGRNAELVRAFILAREAKVPTIALTQSGSPVAQAADITVPVDLPEGNNIYRPTST 239 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R+A L ++D++A+ R + L+R+K+ L R + D Sbjct: 240 RIAYLALLDIVASLVAYRVQPQATVTLRRIKQQLVVHRDGDDRQLMGD 287 >UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C5BVH6_BEUC1 Length = 299 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 6/281 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++ L L SER++AE IL P +I +A S+ +V RFCR++ G Sbjct: 16 VLTRLPGLLPTLRSSERRIAEAILDDPQAVSRDTIEQLAARCGTSKTSVTRFCRTIGLAG 75 Query: 63 FPDFKLHLAQSLANGT-----PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 + + +L LA + + + + + + ++ + + L +LD++A Sbjct: 76 YTELRLALAGDVGRRRDESWRAELGSSADPQNPADVVVDELLTANVRALTETVRTLDRAA 135 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + +VD L A +I +G+G S VA D +F R + D Sbjct: 136 LAASVDALASAGRIDLYGIGGSGTVAADLQRRFHRIGRVAHAWSESHDALTGAAMLGASD 195 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V + +SHTG T + LAR+ A IA+T+ G+ +A A L + E+ Sbjct: 196 VAIALSHTGETSEVAAALALARDRGATTIAVTNYPGSAVAAAADLVLVTAAHEERARADG 255 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + R AQ+ V+D L + + L+R EA++ +R Sbjct: 256 LAGRHAQMFVVDCLYVLVAGVLHDESQSGLRRTSEAVRSTR 296 >UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocaceae RepID=Q03YQ8_LEUMM Length = 284 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 140/279 (50%), Gaps = 3/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ ++++Q + + +E+K+ + I+ A ++I M+ + VS T++RF + + Sbjct: 4 NIIAQLRAQRKQYNTTEQKLIDFIINHVSEAREANIQEMSELSGVSTATISRFVKKIGLE 63 Query: 62 GFPDFKLHLAQSLANGTPYVN--RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 F +F + LA + V+ + + D + K+F A L +L + ++ Sbjct: 64 SFREFSVSLASAATQMAASVDLFGEIADTDDTIAVAQKVFGGAENALAATVSNLTATQLD 123 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A L A+++ FFG+G S+ VA +A +KF R + V+ D +Q M + + D Sbjct: 124 EATLALISARRVGFFGIGGSSIVAFNAYHKFLRTPIDVIAHPDYDVQLMQAVKLNSNDTA 183 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 V+ISH+GR K+ + +A+ E +IA+TS +PLA+ A L + E M Sbjct: 184 VVISHSGRNKDTLLIAKKLHEQHVKIIAVTSFKDSPLAKLADLVLLSLAEEVNFRSESMS 243 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S +AQLT+ID L T + + +++ ++E+R Sbjct: 244 SLIAQLTIIDTLFTLVGSHLSQDTQSVVDTMRDVIEETR 282 >UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NHI8_9LACT Length = 281 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 129/279 (46%), Gaps = 4/279 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L KI+S + ++++R +AE + + + S+ + S RF + M Sbjct: 1 MSVLYKIKSSMSAFTETDRSIAEFVFVNRQVVLESNAKELGDMTKTSAAAWVRFSKKMGY 60 Query: 61 RGFPDFKLHLAQSLAN--GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G P FK+ LA+ + + +N DS+ K + LD A+ Sbjct: 61 KGLPAFKVALAKETQSYTNEDDIETFLNPQDSLMGLLQKTENMLTQNIRETFSLLDYHAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +A++ + +AK + G+G S+ V D +K R + V+Y D+ DV Sbjct: 121 EKAIEFIHEAKTVFLLGVGGSSIVCLDFYHKMTRIHQNVMYDRDLHTLMPRIAQLDKNDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT--SAGTPLAREATLAITLDVPEDTDIYMP 236 V++IS+ G T+++ +A++A+ A ++ +T + + L+ + + + + V E Sbjct: 181 VLVISYNGETESVNSIAKVAKTMGARIVGVTKYNLKSTLSTLSDIRLFVPVEEKEIRLGS 240 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR + LT+ D+L G +D L R ++ +KE Sbjct: 241 ITSRNSLLTITDLLYYGIAKTDFNVTKDLLVRTRQFIKE 279 >UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDH7_9FIRM Length = 281 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 1/273 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N E +Q L+KS R VAE ++ A + SI+++A E V+E TV RFCR++ Sbjct: 4 NFWELLQQHQGDLTKSGRTVAEYLVQHAAEAQYLSISSLARECQVAEATVFRFCRALGFE 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ + ++ LAQ+ A G + D + M ++ +++L A+++A Sbjct: 64 GYHEMRIALAQANATGVLVNQQEPAPDADTATLCEHASALFMTAINGTQNALSPQAVDQA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V LL A+++ G G S A A + +F D +Q M+ ++ DVV+ Sbjct: 124 VALLHSARQVFCMGQGGSMAAAKEICARFACITNKFRAVADSHMQVMAASLMTEQDVVLF 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S++G T++L+E + A+ N A +I +T +P A+ A + + E + + Sbjct: 184 VSYSGATRDLMETLRTAKANGAKIILITHYEDSPGAKLADIVLLCGAQESPLDSGSIPIK 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 +A L V +VL + L + +R EAL Sbjct: 244 VAVLYVAEVLVLRYILDDKPGSTEAQERTTEAL 276 >UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus suis RepID=A4VXR0_STRSY Length = 275 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 4/278 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN + +E+L+ +E K+ + I + +I +A A VS T++R + M Sbjct: 1 MN-RNILNHSIENLTPTENKLLDYIEENIHRIETMNIYQLADNAGVSTATISRISKKMGY 59 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F K+ +A+S + +N + DS++ + K+ S + L+ + Sbjct: 60 SNFNKLKIEIAKSKYDD--LLNAHFTPSDSIDDISTKLIHSITISNQQTVSFLNLEELEA 117 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV LL A +I FG+G+S V D K R +++ D +Q + +GD+ + Sbjct: 118 AVKLLQSASRIYLFGVGASGIVCSDFYYKLSRIGKTCIFAQDTHIQMANIATAGNGDLAI 177 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G TK +VE + A+EN I +T G LA A + + E + S Sbjct: 178 GISYSGMTKEVVEPLRFAKENGVSTITITGTGKNQLADLADITFRIPRHEHELRVGAITS 237 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R L + D+L + L++ K + + Sbjct: 238 RSNSLFLTDLLYLALIQDHKQEITAILEQTKHLTEVIK 275 >UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI5_9CLOT Length = 294 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 5/281 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+S+++ + +++ VA IL + + I +A+E+ VSE TV+RF ++M Sbjct: 13 TIVLDIRSKMQDFNPAQKAVANYILNNFYDMEGMPIRDLAVESEVSEATVSRFVKAMGYE 72 Query: 62 GFPDFKLHLAQSLAN---GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + F+L + +S A G+ V E+D+ KIFES + L +D A+ Sbjct: 73 NYRAFQLEVTKSKAERRKGSLKGYAEVTEEDNAPGICRKIFESNIQALQDTLTVIDYDAL 132 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA DL+ +A+++ F G S A+ + R + D Q ++ DV Sbjct: 133 ERAADLIARARRLCIFAQGRSKVTANSIRLRLHRLGIEGTLYTDPHEQAIASSLMGPEDV 192 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAI-TLDVPEDTDIYMP 236 V IS GR+++++ + A + +I +TS TPL +EA + + T++ E P Sbjct: 193 AVGISTFGRSRSILVSIRRAAARGSSIIGVTSYQNTPLEKEADILLRTVNNDEADFGSEP 252 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + + Q+ ++D L R K + K ++A+++ + Sbjct: 253 SCASVTQMVMLDCLYMLVAKRMEGKAEERFKITRDAIQQEK 293 >UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=Lactobacillus RepID=Q1WQV4_LACS1 Length = 274 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 130/281 (46%), Gaps = 8/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L I++ LS+ ERKVA +L +P +I +A +A VS T+ RF R M+ Sbjct: 1 MNLLNNIEAIFSTLSRQERKVALKVLQNPQEVQSMNITKLAKKAGVSNATITRFVRRMEC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFKL LA S A+ V +S K++E L LD I+ Sbjct: 61 SDFHDFKLKLAISAASS-----PEVPVSSESDSMGDKVYEFYQKVLQGTWKQLDTDTIHN 115 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V +T+A+++ +GLGSS A + + R + + D + + + DV++ Sbjct: 116 IVHAITKARRVYVYGLGSSGYTAQEFTQRLIRMGIAAFCTVDSHMMFIDSTIVNSDDVII 175 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T ++ LA++ +I++T +PL +T + + D + S Sbjct: 176 AISQSGNTDDVNVACSLAKQKGTKIISITGFYQSPLIELSTWSAVVKNSNFVDNTRFINS 235 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +LA + VID++ + +++ + + E + + + K Sbjct: 236 QLAIVYVIDIITMELMEK--SEYSSTMNKTVELIMDRKLSK 274 >UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6X6_RUMHA Length = 297 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 3/280 (1%) Query: 1 MNMLEKIQSQLE--HLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM 58 M E++ + + H K+ERK+A +L + D ++HS++ +A E VS+ ++ RFC+S+ Sbjct: 17 MGCRERLIDKRDGEHTKKTERKIAAYLLGNFDKSLHSTLLELADEIGVSDASIVRFCKSI 76 Query: 59 DTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF ++K++ A N +++ DD+ KIF + L+ + LD S + Sbjct: 77 GYTGFQEYKINAALQSVPEPRLYNPSLSVDDNPAEICDKIFAIESSALEQTKQELDISVM 136 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 N+ D+L +A++I G G SA A D +K + V +D LQ MS ++ DV Sbjct: 137 NKVADVLLKARRINLVGTGGSAISARDFQHKLLKIGVRAELQEDKDLQLMSASLLTEEDV 196 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 + ISH+G ++ E +LA++ +A +I LT + L +A + + + Sbjct: 197 LFAISHSGSNLHVAETIELAQKRNAKIITLTMKSKNILVEKADYPLYVVSEKTIFESESF 256 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +RLAQL ++D L + + +K + A ++ Sbjct: 257 SARLAQLAMLDCLVALMAFKNFDGSLEAMKATRIATSVNK 296 >UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=Pediococcus RepID=Q03HR4_PEDPA Length = 270 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 132/279 (47%), Gaps = 11/279 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+++ ++ + LS+ ERK+A ++ P + +I ++ +A VS TV RF + M Sbjct: 1 MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F FKL LA++ +N T V+ D ++ + + +++ +N+ Sbjct: 61 PDFSQFKLGLAEATSNITENVDNAPLPD--------QVTDFYNQMITGTWKRINQKTLNQ 112 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 L+ A ++ FGLGSS A + + R + D +S D+++ Sbjct: 113 VAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYISSSIMQKDDLLI 172 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 ++S +G++ + E +A+++ V+++T+ +PLA + +++ E D + S Sbjct: 173 VLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINS 232 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +L + +ID+L+T L + ++ ++ A+ + Sbjct: 233 QLGVVYIIDILST--MLLQNETYKARYQQTVAAILNRKM 269 >UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUN7_9ACTO Length = 294 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 6/285 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + +I+ + L+ +E++VAE +LA P +I +A + S TV RFCR++ G Sbjct: 4 IETRIRGLVPTLTPAEQRVAEQVLADPLGTHRGTIGQLAERSRTSLTTVTRFCRALGMAG 63 Query: 63 FPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 + + + LA + ++ DD ++S + + + L LD + Sbjct: 64 YQELRFALATEAGEASSRDWTLGAAADIGPDDPMQSVLANLVATDVRALQETASQLDLAV 123 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + VD +T A+++ + + SAAV +D + + + D+ S D Sbjct: 124 AEQLVDAITTARRVDLYAVSGSAAVTNDLQRRLHQLGITCHLWIDVHDALASATLLGPED 183 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V + ISH+G T ++E AR+ A+ A+T+ + + A L +T E T Sbjct: 184 VAIGISHSGETIEVIEPLTAARDAGAVTAAVTNFPRSAITSVAGLLLTTSAREATYRSGS 243 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 + R QL VID L TG R + R A++ R ++ Sbjct: 244 LSGRHTQLLVIDCLVTGVAQRTSPASDAAVARTAAAVRPHRVGRR 288 >UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU Length = 291 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 126/291 (43%), Gaps = 8/291 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +++ +L+ S SE+ +A+ IL + ++ ++ S+ +A + S T+ R CR + Sbjct: 1 MSIMTQLEFELD-FSSSEKTIAKYILDNGEDILNLSVKELAKQTYTSPATIVRLCRKLGL 59 Query: 61 RGFPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ DFK+ + L VN DS +I ++ + +D Sbjct: 60 NGYGDFKIKYSAELQFDKKNKKRVDVNFPFGNTDSNSQIAYRIANLHQEAIEDTLNLVDF 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 +++ ++LL QA++I FG G+S D +K R V Q CS Sbjct: 120 KNLDKIINLLDQARRIYLFGNGNSLLAGFDFQHKMMRIGKMVEMRAHAGEQGFLSYTCSP 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTD-I 233 DV +LIS++G T +VELA+ ++ ++ +TS G L++ T + E Sbjct: 180 DDVAILISYSGETNEMVELAKFLKKMHVPLLGITSIGDNQLSKYCTYIMNTGSREKIFSK 239 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 P S+ + ++D++ + + + + K +N Sbjct: 240 IAPYSSKTSISYLLDLIFSCIFRLNYDHYINEKINRDKLFDHRHPYKSPIN 290 >UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJG3_9BURK Length = 325 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 144/287 (50%), Gaps = 2/287 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I L +ERKVA +IL A +SI A+A +A VS TV RF +++ R Sbjct: 40 DIVARIAECAPELRSAERKVAALILDDLTGASRASIGALAQQAEVSIATVTRFAKAVGCR 99 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + KL LAQ+ A G ++ R+ D+ E ++F+ L H L ++ + A Sbjct: 100 DVRELKLRLAQAAAVGQRFLERDA-ASDAPEPIATRVFDELQTALAHNHQLLRQAPLAEA 158 Query: 122 VDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 L A+ I FG+G S A+A + + R PV D +LQRM S VVV Sbjct: 159 AAALRNARMIYVFGMGGGSTALADEMRFRLVRLGRPVATYQDGLLQRMVASTVSRDCVVV 218 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S TGR +VE ++AR A V+A+T+ +PLAR A I + E IY P SR Sbjct: 219 ALSTTGRVPEMVENCKIARSYGATVVAVTAPASPLARLADWLIPIVAFETDFIYKPSSSR 278 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 A + +DVL T + +G + R+ L+R+K AL R L D Sbjct: 279 YAMMMALDVLVTELAVSQGDESRELLRRMKHALDAHRGGGDRQPLGD 325 >UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH25_PETMO Length = 283 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 129/274 (47%), Gaps = 4/274 (1%) Query: 7 IQSQLEHLSKSERKVAEVILA-SPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 + S++ +KSE+KVAE IL ++ +I +A + SE T+ RF + F D Sbjct: 8 LNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGFETFQD 67 Query: 66 FKLHLAQSLANGTPYVNRNVN--EDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 FKL LA +++ ++DS + K+ ++ +++ LD + +A + Sbjct: 68 FKLTLALDNNEDIFEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDINNFLQAAN 127 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 + AK+I +G+GSS+AVA K R P +D +Q +S + GD+ + IS Sbjct: 128 FIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLNFGDLAIGIS 187 Query: 184 HTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 +G TK+ V+ +A+++ A I+LT A +P+ + + + + + E+ S L Sbjct: 188 QSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTSAGRSILV 247 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 Q+ +++L+ K K A+ Sbjct: 248 QIFAVEILSGLLYSIEYEKALTTGKDTARAVVNK 281 >UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax=Enterobacteriaceae RepID=MURR_SALAR Length = 287 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 8/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L K+++ +++E+K+A +LA S MA + +S+ ++ +F + + Sbjct: 1 MLYLAKMRNAEGEFTENEQKIATFLLAHVGELKTVSSRNMAKQLEISQSSIVKFAQKLGA 60 Query: 61 RGFPDFKLHLAQSLA-------NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 GF + ++ L + + + +++ ++ +DS+E K+ + L+ + + Sbjct: 61 NGFTELRMALIEEHSVSREKKRDKAVHLHSSITSEDSLEMMARKLNREKIVALEETYNLM 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + ++L+++A I G+G SA V D K + V D +Q Sbjct: 121 DYERLEQVINLISKAPLIQITGVGGSALVGRDLSFKLMKIGFRVACEVDTHVQATIAQAL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTD 232 GDV + IS++G K +V A+ AR+ A VIA+TS A +PL R A + E Sbjct: 181 RQGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLADYTLDTVSGETEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 M +R AQ +V D+L G + ++R E + Sbjct: 241 RSSSMSTRTAQNSVTDLLFVGMVQLNDVESLRMIERSSELI 281 >UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLH9_PECWW Length = 320 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 4/279 (1%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I + L LS + + +A +L +P + +A+E VSE T+ RFC+ + G + Sbjct: 40 IANILHGLSDTNQTIANYVLQNPSMVAQLPVKKLAVEIGVSEATIVRFCKHIGYAGLLEL 99 Query: 67 KLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 K L + L + + V ++ +D+ KI + + +D IN+ V Sbjct: 100 KSALNRELFDDSDLSLPVTPDILMNDTRHDVAQKIALTVDRAVKETIDLIDMQTINQIVS 159 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L A+++ F G G+S A +A +K R + D + N D+VV S Sbjct: 160 LFISARRVMFIGFGASGLAALEARDKMNRIGIDSDAFTDRFSMTLKLANLKPDDLVVAFS 219 Query: 184 HTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 H+G T +V +LA + A +A+T S +PL + + + +R++ Sbjct: 220 HSGETPEVVNAFKLAEKAGATRLAITHSTHSPLTSLGNYVLLTCGESERYQGDSIGTRVS 279 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 QL +I+ L T T + F +K L + R + Sbjct: 280 QLFMIEFLCTELTKQNFKDFSSQSISIKALLIKERIKQH 318 >UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1QW74_CLOBU Length = 281 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 127/280 (45%), Gaps = 2/280 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN I+ + +++SE+K+A+ +L + S + +A S +V RF R + Sbjct: 1 MNCSLLIKQIYDKMTESEKKIADYVLVNSSEVYKFSASELANITKTSSSSVVRFSRKLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN-VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF +FK+ LA+ N + + ++ +D++ K + +++ LD+ I Sbjct: 61 EGFQEFKIELAKDDINPVENIEYDYIDTEDNIREVIVKTANKNIQSINDTISLLDEHTIE 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A+ + AK I FG+G SA + D K R + + S + +Q N S+ D+ Sbjct: 121 EAIKAIKNAKNIYIFGIGESALIGLDLQYKLLRIHKNAMISLESHVQLSMSANISNDDIA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + IS+ G+TK + +E A I +T G P++ + I + E + Sbjct: 181 IGISYLGKTKEVYSALSKCKEKGAKCITITKFGENPVSSLGDIKIQVPFVEKDLRIGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+ QLTVID+L G + LK + ++E R Sbjct: 241 SRIVQLTVIDILFVGLAKENFSDVEKYLKETRNMIEELRM 280 >UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales RepID=D1PSB4_9FIRM Length = 282 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 1/276 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N E ++S+ L++S R+VA+ + + A + SI+++A E V+E T+ RFCRS+ Sbjct: 5 NFWELLRSRYSELTRSGRRVADYLTRHAEEAQYLSISSLAAECGVAEATIFRFCRSLGFD 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ + K+ LAQ+ A T + + A+ ++ R L+ AI+ A Sbjct: 65 GYNEMKISLAQANAIPTAAGADKLEPGADTATLCTHASAVALEAINGTRSVLNPEAIDAA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 LL +A+++ FG G S +A+D +F + + D +Q ++ DVV+ Sbjct: 125 ATLLQRARQVFCFGQGGSQILANDIWARFATVSTKFRTAGDSHMQTIAASLMVPEDVVLF 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T++++E ++ + N A VI LT A P A + + E + ++ Sbjct: 185 ISYSGSTRDMMETLRIVKGNGAKVILLTHYADAPGTALADVVLLCGAKESPLDGGSIAAK 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +A L V +VL FTL +R +AL Sbjct: 245 IAVLFVAEVLVLRFTLDNQELAAIARERTSKALAPK 280 >UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enterococcus RepID=C0X1P6_ENTFA Length = 285 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 137/280 (48%), Gaps = 9/280 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN + I L+KSERKVA+ IL S ++ I+S++ + +ANV + T+ RFC+ + Sbjct: 14 MNYIYLINEHYPLLTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGF 73 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ +A+ + + D ++ +S + L +++ + + Sbjct: 74 SGFSDLKIEIAKEDFSKKKEQPSSGKYHD-------EVAKSLIEVLQSTSCLINEEKLTK 126 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A+ L+ QA + FG+GSS + D + F R + D Q +D D+V+ Sbjct: 127 AIQLINQASSLYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVI 186 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +G+TK+ + ++A+ N A ++A+T+ +P+ + A L + + E + + Sbjct: 187 IFSLSGKTKDTYDSLKIAKNNGAKILAITNYIHSPIGKSADLVLQTAIEEFLN-GGSLAG 245 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 +++QL + D+L + D ++V ++ + R + Sbjct: 246 KISQLYICDLLVHEYEQNNKINSLDLREKVLRSIIDKRIE 285 >UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DJX2_STACT Length = 288 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 4/276 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++ I+ Q++HL+K+E+ +A+ +L P+ + S + S TV R + +G Sbjct: 6 LIIHIREQMKHLTKNEQHIAQFLLEHPEKVLEMSAQTLGDVTKTSSATVIRCAHKLGFKG 65 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F D KL L+++L + + + +D+S K+ A TL+ L+ A+ V Sbjct: 66 FVDLKLSLSRNLPQHEAHNYKEIAQDESPREIKRKLLSRAAYTLETTEVLLEDQALEALV 125 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD--VVV 180 D L +KI FG+G+S VA D KF R + V+ S D + D + + Sbjct: 126 DKLYDVQKIVVFGVGASHIVAEDIYQKFTRAGMEVIQSADAHVLATVLAGYHKKDNVLFI 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLD-VPEDTDIYMPMV 238 +S++G + + LA +A A V A+TS + + LA EA + + D E + Sbjct: 186 GVSNSGHNQETLRLAHVAHYYGATVAAITSRSDSKLAGEADIVLLHDASSEKSLRLAATS 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 S +AQL +D+L + + +L K+A++ Sbjct: 246 SLIAQLMTVDILFYTYLSKDYQAHVAHLSETKKAVE 281 >UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BB20_PARDP Length = 280 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 138/265 (52%), Gaps = 6/265 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I+ L + +ER+VAE +L +P AI SI+ A A VSEP++ RFCR +D G Sbjct: 15 MLDRIRQSLASFTPAERRVAEAVLDTPSTAITWSISDAARIAKVSEPSIIRFCRRLDCDG 74 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNE----DDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 FPDF+L LAQ LA P DD + + IF+ A ++ R LD A+ Sbjct: 75 FPDFRLKLAQQLAKHQPAPQPLARPGSGNDDPLAAMVDDIFQRAGQAIEEARRDLDLGAL 134 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV +L +A+++ +G GSS +A +A ++ +P V D LQ S GD+ Sbjct: 135 RAAVAMLGKARRVDIYGYGSSGFMASEAQHRLAALAIPAVAYSDPTLQMHSAPLLGPGDL 194 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPM- 237 + ++S +G T L+ ++AR+ A V+A++ G+ +A A + + L+ + M + Sbjct: 195 LFVLSFSGLTSYLISNIEIARKAGAPVLAISPKGSIVASLADVNLNLNAYRQSSGRMAVP 254 Query: 238 VSRLAQLTV-IDVLATGFTLRRGAK 261 R+A + V +D L G + Sbjct: 255 TGRVAPMYVLLDALFAAMAEEMGGE 279 >UniRef50_A5VV40 Transcriptional regulator, RpiR family n=37 Tax=Rhizobiales RepID=A5VV40_BRUO2 Length = 305 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 151/288 (52%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ + SKS+R++A ++LA P A ++I+ +A A VSEPTV RFCR++ Sbjct: 18 DIITRLHVVAQEGSKSDRRLAGLVLADPHYASKAAISEIAARAGVSEPTVTRFCRALGCD 77 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVES-YTGKIFESAMATLDHVRHSLDKSAINR 120 G DFK LAQ+LA G Y+ + D ES + ++A+A + +D + + Sbjct: 78 GVRDFKFFLAQALAIGGQYLTAEIPARDVRESRIATAVTDAAIAAIQRAGDGVDMGVLMK 137 Query: 121 AVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + L + G G S+ +A + N+ FR +PV D LQRM + V Sbjct: 138 VAERLAAGGPVLCLGSGGMSSMLATEMENRLFRLGIPVNAQVDGQLQRMYAAVTTHETTV 197 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +G +++VE +AR+ A +A+T+AG+ LAR A + I ED +IY P + Sbjct: 198 LAFSVSGFARSVVEAVLVARQYGAETVAITAAGSDLARAADMLIPFQPNEDGNIYKPTSA 257 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R L ++D++AT RG K ++L+R+K +L D L L D Sbjct: 258 RYGLLAILDMIATAAAEARGPKVLESLRRIKHSLNTLTIDDPRLPLGD 305 >UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax=Gammaproteobacteria RepID=RPIR_ECOL6 Length = 296 Score = 223 bits (568), Expect = 6e-57, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 125/269 (46%), Gaps = 1/269 (0%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 ++ + E ++++E ++ E +L + + +I +A VSE + + + + GF + Sbjct: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 Query: 67 KLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 + L + + + D++ + K+F + T+ + ++ I+RA Sbjct: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 QA++ +G G S A+ D +KF R V D + MS +GDVV++++H+G Sbjct: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 Query: 187 RTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLT 245 RT ++ +LA++N A +I +T S +P+A+ A I PE + +R+ QLT Sbjct: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 Query: 246 VIDVLATGFTLRRGAKFRDNLKRVKEALK 274 ++D + N+++ + Sbjct: 260 LLDAFFVSVAQLNIEQANINMQKTGAIVD 288 >UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIB3_RHOER Length = 291 Score = 223 bits (568), Expect = 7e-57, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 124/281 (44%), Gaps = 5/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++L +I++ L LS +E ++AE+I A P A ++ +A A+ S TV R + + Sbjct: 11 VDLLARIRASLSSLSPAELRIAEIIEADPSLASTLTVNDLAERASTSTATVVRTAKRLGF 70 Query: 61 RGFPDFKLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P +L LA +GT + ++ DS K+ E L D +A Sbjct: 71 EGYPQLRLALAAISGSGTENTIPLGVDIVAADSAGEVMAKLAEFESEQLKGTAQLTDPAA 130 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + V + A+++ +G+G+S VA D K R +V D +S D Sbjct: 131 LEEVVSRIRSARRVEVYGIGASGIVAQDLTLKLSRIDVNCRVHLDRDAAMVSASLLGPDD 190 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 + V ISH+G T ++VE LAR A A+T A + LA ++ + E Sbjct: 191 IAVGISHSGETSDVVEPLALARRTGASTAAITGGARSTLAVQSHHVLLTAGREFGFRSAA 250 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR QL V+D + + L+R +A+ R Sbjct: 251 MASRTGQLLVVDTIFAMVAHSLPS-ALSALQRSHDAIASKR 290 >UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=16 Tax=Enterococcus RepID=C2H8J8_ENTFC Length = 286 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 146/283 (51%), Gaps = 3/283 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +I+S +E S +E+K+A I+ + + + +A + +S PTV RF + + Sbjct: 5 MSVISRIESMMEDYSSAEKKLANYIIGNIEKVPTMTANELAEASGLSAPTVVRFSKKIGF 64 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + DFK+ ++ L G ++ ++S S K+ +A + L++ I + Sbjct: 65 QSLTDFKITISTELQTGIDEGFSDIEANESFYSIKNKLGNNAQVAIKETVDILEEETIQK 124 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ L A+ + +G+G+S+ V D + K+ R P+++ DI + ++ V+ Sbjct: 125 VVECLETAESVFLYGVGASSLVVEDILQKWSRVGKPIIFEKDIHVLLPQLVSNEKKKVLW 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVP-EDTDIYMPMV 238 L+S++GR+ ++V LA+LA+ + +IALT G PL++ A + + P E T+ Sbjct: 185 LVSNSGRSTDVVALAELAKNMNIEIIALTQFGNNPLSKIADVLVQTSRPKEITNRSAATN 244 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 S LAQ ID++ + + + +K+ +EA+++ D + Sbjct: 245 SLLAQFATIDIIFYFYMAKN-ESLSEKVKKTREAIQDYFMDSK 286 >UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PED1_BACCO Length = 289 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 3/276 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +I+S+L LSKSE+K+ E IL+ ++ + + +A +A VS TV RFCRS+ Sbjct: 6 NIILQIKSKLTSLSKSEKKLGEYILSHAVETVNDNTSELAKKAGVSPATVVRFCRSIGLS 65 Query: 62 GFPDFKLHLAQSLANG-TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ L + G + ++ ++ + K+ ++ + L+ S I + Sbjct: 66 GFSQLKIRLYADASGGLDREIYTDITPNEDITMIADKLALRFNQSITQTANLLETSCIEK 125 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ ++ I +G+G+S A D +KF R PVV++ D L S +N S + V Sbjct: 126 ITAMVDKSPAIYVYGIGASHVAAEDFTHKFSRIGKPVVHTLDHHLLGSSLINASKDCMFV 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDT-DIYMPMV 238 IS++G T ++L Q+A++N + +T + LA + E Sbjct: 186 AISNSGETNEAIKLTQIAKQNGLFTVGITQKRDSTLASIVDAPLIHHGGEAVLLRSAATT 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 S AQL IDVL + + + LK K ++ Sbjct: 246 SLAAQLFTIDVLYFAYVAKHYHEIMGRLKNSKINIQ 281 >UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=22 Tax=Enterococcus faecalis RepID=C2JLW7_ENTFA Length = 290 Score = 222 bits (567), Expect = 8e-57, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ IQ +L+ L KSERK+AE IL + + I + +A +A S + RFC SMD Sbjct: 12 NIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSMDVN 71 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + KL L+ +L + V + +S K+ + ++ +L+ A+N A Sbjct: 72 GFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAVNEA 131 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VDLL + + I +GLG+S+ VA D KF R V + D L + V ++ Sbjct: 132 VDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSVFIV 191 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPED-TDIYMPMVS 239 IS++G K LA LA++ ++++T + + ++ + + ED VS Sbjct: 192 ISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDVPLRSAATVS 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL V+DVL + + + + ++ ++ ++ + Sbjct: 252 LVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLK 289 >UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NYS8_9CLOT Length = 282 Score = 222 bits (567), Expect = 9e-57, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 127/277 (45%), Gaps = 2/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + ++I S + L +E+KVA+ +++ P AI S++ +A + S+ T+ RFC+ + +G Sbjct: 7 VRDQIFSTYDSLYDAEKKVADYLISHPSEAIEMSVSELASHCDASQATIIRFCKKIGCKG 66 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F K+ LA V N + D ++ I S + + H+ + + V Sbjct: 67 FHQLKIKLAGEQRQQEEQVISNEIDIDQMDKSLNNIMISKVEEIKATFHNFNPEELREIV 126 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 DL+ A I F +G + +A D KF + + V S Q GDV I Sbjct: 127 DLIIHANLIEFAAMGDTIPIALDGSYKFNQLGLKAVSSTIWESQEAFSRTLRKGDVFFAI 186 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S +G +K LV++ ++ ++N IA+T+ +PLA + E +R+ Sbjct: 187 SASGASKRLVKMVEIVKDNGVTTIAITNQSKSPLAELCDHVLLTATREHIFHDQVSFTRM 246 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 A ++VID L + F +N+ + ++++ E + Sbjct: 247 AAMSVIDTLFLLLFSTKWDSF-ENVAQHEQSVAEEKL 282 >UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales RepID=C6JFM8_9FIRM Length = 285 Score = 222 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 130/280 (46%), Gaps = 5/280 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L+ I Q L+KS +K+A+ + + + SI ++A VSE T+ RFCR + Sbjct: 4 SILDSITEQYHSLTKSGKKLADYVFSHTTETQYLSITSLAENCKVSEATITRFCRGLGLS 63 Query: 62 GFPDFKLHLAQSLAN----GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+ FKL LAQ+ + V+ +DS+ + K+ + + +L+ D+ Sbjct: 64 GYNAFKLALAQADRTTDLGDSSNSAEPVSSEDSISTICAKVHAANLLSLNESYALYDEEE 123 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +++A+ +L+ +++I FG G S +A +A +F + V+ D +Q + D Sbjct: 124 MSKAISILSSSRRIYCFGQGGSMIMAMEAWARFSTASPNFVHICDSHMQASAIAMADSKD 183 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 ++ S++G T+++ + Q+A VI +T + A A++ + E Sbjct: 184 AILFFSYSGSTRDMCDTLQIASSRHVPVILITHFPKSAGAEFASVVLQCGYNESPLQSGS 243 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + +++ QL +ID L G+ ++ A+ Sbjct: 244 VAAKVGQLFLIDCLFYGYCSQKPDTCSAARSATAHAIANK 283 >UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales RepID=C5EPZ9_9FIRM Length = 295 Score = 222 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 131/287 (45%), Gaps = 15/287 (5%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I+ L KSE+K A+ L SIAAMA A VS+PTV RF +++ GF +F Sbjct: 9 IKRIYASLRKSEQKAADYYLGYDGPVETMSIAAMARAAGVSQPTVMRFVKALGLEGFKEF 68 Query: 67 KLHLAQSLANGTPYVNR---------------NVNEDDSVESYTGKIFESAMATLDHVRH 111 K + ++ G ++ D E G++ +++ LD Sbjct: 69 KYQVLKASMGGNGSGMGEEEGGRSEEVLRYGYEISARDRPEEVPGRVVAQSVSYLDDALK 128 Query: 112 SLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCM 171 + S+I RA L+ A++IA + + +SA+VA D + K + +DI LQ +S Sbjct: 129 HISPSSIGRAAKLICGARQIAVYYVENSASVAGDLVTKLMYLGFNCIMYNDIYLQHISAG 188 Query: 172 NCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDT 231 N DV + IS++G +KN V++ +LA++ A IA+T+ L + + Sbjct: 189 NLDSRDVAIGISYSGSSKNTVDVMKLAKKKGAATIAITNFEHSLIAGHADILLCTSSQQL 248 Query: 232 DIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + SR++Q V+D++ G LR F + L ++ + Sbjct: 249 LYGNAIFSRMSQTAVVDMIYMGIILRDYGHFTEKLDESSRIIRRQAY 295 >UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X148_ENTFA Length = 295 Score = 222 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 149/288 (51%), Gaps = 8/288 (2%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 ++I+ + +LS +E+K+++ + S ++ ++A E VS+ +V +F + + GF Sbjct: 8 QRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKKIGYSGFQ 67 Query: 65 DFKLHLAQSLANGTPYVNRN-------VNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 +FK+ +A++ + N N ++ DD + K+ ++ + +L + L K Sbjct: 68 EFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNATQFLTKEL 127 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 ++ + L+ AK + FFG G S+ VA D+ +KF R N Y D +Q + D Sbjct: 128 LDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFVTKLTSED 187 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 V + SH+G+TK + LA+ ++ +A +I LT ++G+ LA + AI + E Sbjct: 188 CVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEEGLFRAES 247 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 + SR++ LTV+D+L T + D+LK++++ + ++ D L+ Sbjct: 248 LASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTDPHYLS 295 >UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family n=11 Tax=Escherichia RepID=B7UNF1_ECO27 Length = 281 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 126/282 (44%), Gaps = 7/282 (2%) Query: 1 MN---MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRS 57 MN + IQS L ++E+KVA+ IL+ ++ S+ ++ +++ SE T+ R C+ Sbjct: 1 MNNITVKSLIQSNYPTLHQAEKKVADYILSHAHEVVNYSVTELSEKSHASEATIVRTCKK 60 Query: 58 MDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 + +G+ K+ LA+ + N N + D + S + + L + Sbjct: 61 LGYQGYYHLKIALAKEVINPDNSYPDNTDFTD-ITSLATFLLKKQAEDLIQSTQFFNAEV 119 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + + LL I FF G+S +A KF + + V +Q + + D Sbjct: 120 LESILKLLANCDTIFFFAAGNSNPLAVYGAYKFSQLGLKTVVHVSPEMQINAAYSMGKRD 179 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMP 236 + + IS++G T +V++ ++ +E A + +T+ +PL++ +T + V + Sbjct: 180 LAIGISNSGSTNLMVDIFKVVKERGAKSVCITNYIKSPLSKLSTHQLNTAVSDKIFFEAF 239 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +R+ + VID+L F + A + R +E SRF Sbjct: 240 DSTRVPAMGVIDMLVLLFMYKNKAHYEKY--RTREEFLGSRF 279 >UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=Firmicutes RepID=B1R0U2_CLOBU Length = 284 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 141/280 (50%), Gaps = 4/280 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++++ I ++ ++E+K+A+ IL I +I+ +A A S+ TV RFCR + + Sbjct: 6 SIIDTIYAEYNSFFEAEKKIADYILKYGTKLIEMTISELAEAAGTSDATVTRFCRKCNMK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNE--DDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF K+ LA+ L+ R + +++++ I + + + ++++ Sbjct: 66 GFHHLKITLAKELSESQKEDTRVSGDVSEENIKESLNNILFNKIEEMKQTILTINEEKFK 125 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + +L A + F +G++ VA D KF + V V + Q N + DVV Sbjct: 126 EILQILRNAGIVQFVAVGNTIPVALDGCYKFNQVGVASVANTIWETQIAYTYNLKENDVV 185 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + IS++G +K L+++ ++A+E A+ IA+T++ +PLA+ + I E + Sbjct: 186 IAISNSGASKRLIDVIEIAKEKGAVTIAITNSDKSPLAKLSNYHIKTATREKLFLEEYYF 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR++ +TVI++L T+ + ++ L R ++++ + + Sbjct: 246 SRISAMTVIEILFLFMTVGKHDVYK-TLSRHEQSIADDKV 284 >UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C246_9CLOT Length = 292 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 126/279 (45%), Gaps = 2/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L + L L+ +E++VAE +LASP S+ +A+ E T+ R C+++ Sbjct: 9 NILATTRFLLPSLTAAEKRVAEFVLASPKEVTRMSLKKLAVRCECGEATIVRLCKTIGVS 68 Query: 62 GFPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G+ + K L L + ++ + ++FE + L Sbjct: 69 GYAELKSLLETQLQLPAVKEESVRLSTGQGMGEIVARVFELNILNLRRTLEVAAVEEYEN 128 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A ++L+ A KI FF +G + A +F R D +Q ++ N +GDV + Sbjct: 129 ACEVLSTANKICFFAIGDAMFPCSYASLRFRRIGYDCYADSDADVQIVNACNMKEGDVAI 188 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+GRTK +VE ++A+ A+ I +T AG + L + + + + + T + Sbjct: 189 AISHSGRTKQVVEAMRIAKSRGAVTICITKAGKSELTKYSDIVLYNVTTDTTVDKEIIAR 248 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+A+ ++D + G + A L+ V E LK ++ Sbjct: 249 RVAEQAMLDAVYMGVLQKMEANSFARLQEVSENLKVNKL 287 >UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AH41_LEIXX Length = 289 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 7/286 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++ + LS +E ++A+ ++ P + +IA +A + S+ ++ RFC+++ Sbjct: 3 DVLSAVRQAVPRLSATEARIAQTVIEHPQRVVDLTIAELAAVCDASQASIARFCQALRYS 62 Query: 62 GFPDFKLHLAQSLANGTPYVNR------NVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ +F+L +A + + R ++ DS++ KI ++ LD Sbjct: 63 GYREFRLAVAAATSREQATRERFELTESEIDPSDSLQEVVAKIAYQETLAIERTARELDA 122 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 A++ V + A ++ +G+GSS A D K R + S D L S Sbjct: 123 EALDAVVAAIIAASRVDLYGIGSSILTAQDLQQKLSRIGLTAFCSVDSHLALSSAALQKP 182 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 G+V + SH+G T+ +AR A +A+T+ + +A + L + E+ Sbjct: 183 GNVAIAFSHSGETRETNHALAVARAAGATTVAITNVPESSIAAVSDLLLMTQARENFYRS 242 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 M SR AQL ++D L R + D+L+ EA++ R ++ Sbjct: 243 GAMASRTAQLALVDFLFVRVAQRLYDQMTDSLRLTYEAVRSQRPER 288 >UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YGT9_MOBAS Length = 305 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 158/289 (54%), Gaps = 3/289 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++++++ +L + +++R VA+ +L + D A SS+ A+A A VSEP+V RF R M Sbjct: 17 SLIDRMRQELPAMKRADRAVADALLENIDAATRSSVKAVAGRAGVSEPSVIRFARHMGCE 76 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVN-EDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF DFK+ LAQ A G Y++ + + G ++E+ L D +A++R Sbjct: 77 GFSDFKIRLAQDYAIGRMYLSADYQHPAKTGSDVAGHVYEATSQALASAFAQRDPAALDR 136 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A DL+ ++++ FG+G SSA VA +A N+ FR ++ + D QR++ DV Sbjct: 137 AADLIDGSRRVFCFGVGGSSANVAAEAENRLFRLDLAASATADAYKQRITAATAGKDDVF 196 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAI-TLDVPEDTDIYMPMV 238 ++ S TGR ++L+E A+ A++ A +IA+T+AGTPLA EA + I + E+ YMP Sbjct: 197 LMFSVTGRPRSLIESARSAKQCGASIIAVTTAGTPLAIEADVLIPLIAFDEEKFFYMPNR 256 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R QL ++D LAT RR L + L + + + + D Sbjct: 257 GRYGQLFILDCLATLLGGRRMKHISSKLWNARTMLADLNGESENQPVGD 305 >UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEU1_PETMO Length = 269 Score = 219 bits (559), Expect = 8e-56, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 130/278 (46%), Gaps = 11/278 (3%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + KI+ L+ E++ A+ I+ P + IH SI ++ A SE T+ R + + G Sbjct: 2 VTSKIKGIYNSLTNKEKQAAQYIIERPGDVIHYSITELSNWAGTSETTIYRVLKKVGYSG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + FKL LA+ L+ T + + I+ + L + +D+ I A Sbjct: 62 YQKFKLELARELSTPTLDSKES-------KDLFDMIYNRTVNALTDILRQVDRDKITHAS 114 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +++ +KK+ F+ +G S +A DA KF D +Q + N DVV+ I Sbjct: 115 EIIMNSKKLLFYAVGRSFPIALDASLKFAALGFASTAYSDPHMQVIVASNLEKDDVVIAI 174 Query: 183 SHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+G ++ + AQ+A+E A I +T +PL++ L + E VSR+ Sbjct: 175 SHSGVIRDTYKSAQVAKEAGAFTIGMTAGVNSPLSKIVNLVLYTSA-EMPQESEFTVSRI 233 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 ++ ++++L + K +++ R+ +A+K +F+ Sbjct: 234 GEMFMVELLYNSVASKMSLKNKES--RISQAMKTKKFN 269 >UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID=C3RHA3_9MOLU Length = 288 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 3/281 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I++ L SE+KVA+ IL S+ +A E VS+PTV RF +++ F Sbjct: 8 RIKTIYNILRPSEKKVADYILNYCGKLEDLSMTLLAKEVAVSQPTVMRFVKAIGYDSFKQ 67 Query: 66 FKLHLAQSLANGTPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 FKL LA++ ++N DD + GKI +A + L++ SL + V Sbjct: 68 FKLELAKNYDKENNIDILYGFSINTDDKIMDLPGKIVATATSMLENALKSLSLVNYQKTV 127 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ Q++ I+ + + +S VAHD M K V D LQ + N + + + I Sbjct: 128 ALINQSQHISIYAVENSMGVAHDLMTKLIYLGKSVTCHSDYYLQSIDASNLTRDSLAIGI 187 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S++G +KN VE+ ++A++ A IA+ + + + + + SR A Sbjct: 188 SYSGNSKNTVEVLKIAKDAGAQTIAIVNFENTMLTRYGDIVLSTSNDQFLYGDAIFSRTA 247 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLL 283 Q+ ++D++ G + + L +K + K+ L Sbjct: 248 QIALVDMIYMGVIISDYDNYTKKLDHYSRLIKHRGYQKEEL 288 >UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=Proteobacteria RepID=A9IGF4_BORPD Length = 307 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 149/287 (51%), Gaps = 4/287 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I+S+ + LS +ERKVA+ IL A +++ +A +A VS T++RF RS+ Sbjct: 24 DIVYQIRSRRDALSATERKVADAILDDIAAAAGATVDQLADKAGVSIATISRFARSVGCD 83 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 D KL LAQ+ A G +++ + E+ ++ +++ ATL ++ +A Sbjct: 84 DTRDLKLKLAQASAVGERFLDPSTPEE---STFYARLYADIEATLRAHLPRFSEALFEQA 140 Query: 122 VDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ +A+ FG+G +SA ++ + ++ R V D VL RM + DVVV Sbjct: 141 AGIVREARMTYVFGMGGASAVLSQELQSRLVRLGYAVAAYSDAVLLRMVAATLDERDVVV 200 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ++S +G T ++ ++ ++ A ++ LT +PLA A + + + E IY P SR Sbjct: 201 VLSTSGLTPEILAGTRIVKQYGARIVTLTDPASPLAGLADVVLPIHTAETDFIYKPSSSR 260 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 A L ID+LAT L R ++ L+R+K AL E R L L D Sbjct: 261 YAMLLAIDILATELALARQEATQERLRRIKLALDEYRGGPNRLPLGD 307 >UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus crispatus MV-3A-US RepID=D0DKU0_9LACO Length = 284 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 135/280 (48%), Gaps = 3/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+ ++I L KS R +A+ +L +P ++ + + N S +V RFC+ ++ Sbjct: 1 MNVRDRILENYTELKKSSRIIADAVLENPKILLNKNAKEIGNYTNTSAASVIRFCKQLNY 60 Query: 61 RGFPDFKLHLAQSLANGTP--YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G DF++ LAQS + ++ V +DD + K+ S + + ++D + Sbjct: 61 KGLKDFQIDLAQSTVKQSQLKPIDMIVTKDDKADEVMTKLRVSLSQNFEDLSKTIDIKDL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV L+ +++ + G+G+S+ A D K R V Y+DD+ + + DV Sbjct: 121 QKAVSLIKKSRAVYIAGIGASSFSAKDLFYKLIRSGKTVFYNDDVHIALERIYYSTPKDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 ++ S++G T+ L+ + A++N ++A+T +PL++ A + + L E + Sbjct: 181 MICFSYSGLTQELLLAVKQAKKNKTPIVAVTRKSESPLSKLADINLKLPDHESLMRVGAI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S AQ+ + +VL + + ++ + L++ + Sbjct: 241 NSTFAQMFISNVLYLCSISSDLGEVKQEMEATGKLLEKLK 280 >UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=Deinococcus RepID=Q1J2N3_DEIGD Length = 290 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 2/265 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++ E + +V + IL P+ + +IA ++ A S+ TV R + + G Sbjct: 11 VLRRLHLLREEQGAATVRVIDQILMDPERFLSLTIAELSEAAGTSDATVVRLVQHLGFGG 70 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + +FKL L+++LA + + V D+ + KIF+S+ LD L+ A + AV Sbjct: 71 YQEFKLQLSRALAV-SRKADLTVEPQDASVTILRKIFDSSNTALDDTLEHLNLEAFSAAV 129 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +T A+ I G+G+S VA + R + S D +C DV++ + Sbjct: 130 QAMTLARHIELIGMGASGVVALSGQYRGLRLGLSCRASTDPGTFLSTCSLLEPTDVLIAV 189 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRL 241 S +G +V+ A+LAR+ A+V+ALT G TPL++ +T+ P D + +++ Sbjct: 190 SFSGTRPQVVQAARLARQAGAIVVALTGLGRTPLSKVVHHTLTVSAPGDRYRPEGLATQI 249 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNL 266 Q+ ++D L T + + + L Sbjct: 250 PQVAILDALFTSLHVAQDPYLSERL 274 >UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enterobacteriaceae RepID=A1JQZ2_YERE8 Length = 286 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 136/283 (48%), Gaps = 8/283 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L +I L L+++++K+A+ IL +P++ + S + A +A VS+ + +F + + Sbjct: 1 MSILNEITWLLPELAENQKKIAKCILDNPESILSISSSQFAEDAGVSQSAIVKFSQKIGM 60 Query: 61 RGFPDFKLHLAQSLANGT-------PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GFP K+ +++ L+ ++ +++ +DS+ K+ A++ + Sbjct: 61 KGFPALKIAISEELSRNNLFKSYPHKALHNSISPEDSLMVMAQKLAHEKTASIMETTRKI 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 + S + V L+ A+++ G+ + A D K + + + D+ +Q + + Sbjct: 121 NFSVFQQVVSLINAAQRVQIVGIWGAGLTAKDLSYKLQKIGIMTLVEADLHVQIAAALTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTD 232 + DV +++S TGR K++ A +A+ A VIA+T + +PLA+ A + E+ Sbjct: 181 TPKDVQIVLSFTGRRKDMKIAATVAKAQGATVIAITGSKVSPLAKIADYVLESISDENEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR AQ T+ D++ +R + + + Sbjct: 241 RSSSISSRTAQNTLTDLIFLALMQQRKEMAKPLILNASMTINN 283 >UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 Tax=Vibrio shilonii AK1 RepID=A6D304_9VIBR Length = 289 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 129/274 (47%), Gaps = 1/274 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+ + L+K+E+ +AE L +SI +A +VS + + + + Sbjct: 12 QVIPNIRMMMPSLTKTEQSIAENFLQPHFLQKSTSINEVAERLSVSPALIVKVSKKLGFS 71 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K L + + + DDS E K+ ++++ L + + +D S ++ A Sbjct: 72 GFKQLKESLYAQSETQSYAPSERLLPDDSAEKIVSKVLQNSINALTEILNFVDVSMVDAA 131 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L +A+ I F +G S+ + D +K R + D L MS +D DVV++ Sbjct: 132 AEALLKARNIELFAVGGSSIICEDFQHKLLRIGIKSSVPKDRHLMLMSASIMTDQDVVLV 191 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH+G+T +L++ + A+++ A VI++T + L+ + + + + + +R Sbjct: 192 VSHSGQTVDLMDAVRQAKQSGATVISITNNYHAELSSLSDIPLYAPASPEPVLGKNGTAR 251 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 L +L +ID L + + ++L + A++ Sbjct: 252 LVKLAMIDSLYATMASKMPSLAEESLSKTIRAVE 285 >UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=Anaerococcus RepID=C7REF2_ANAPD Length = 279 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M KI+ + E + S+ K+A+ IL P I + +A S+ + RF + + Sbjct: 1 MTYTIKIKERSEDFTPSDTKIAKYILDKPGEVIKINSQKLADLTGTSQSAIIRFVQKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN-VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +G+ KL +A+SL N + ++ DD V K + +++++ +D+ I+ Sbjct: 61 KGYTSLKLDIAKSLENDEINLKSEVISADDKVGDIIEKSKINVISSIEKTYALIDEDQIS 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A+D + A + G+GSS V D + K R Y D N + D++ Sbjct: 121 KAIDNIVYANFVYLAGIGSSGLVCEDFLYKLQRSGKKAFYETDAHTNLSLLTNIKEDDLL 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + I++T +K ++ A+ A+ A +I++T AG LA + + I + E Y + Sbjct: 181 ICITYTALSKEVLIAAEYAKTIGAKLISITKAGRGKLANMSDILIPIPEIEKKMRYGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR A + D+L G+ + + NL KE + + Sbjct: 241 SRFASQIITDILFYGYISKNMDEVVKNLMVSKELTDKLK 279 >UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus RepID=D0R5V5_LACJF Length = 272 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 130/279 (46%), Gaps = 8/279 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +++ + L+KSE K+A I ++ I+ +I ++ N + T+ R C+ + Sbjct: 1 MEFIQRYNQNKDKLTKSENKLANYIATHTEHVIYDTIKSLGTANNTGDATIVRLCKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ LAQ T + + + K+ +++++ ++ S + + Sbjct: 61 SGFSDLKIALAQDSMMTTSKSHEEAQ---TSSELSSKVL---ISSIEKTEELINPSVLKQ 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV LL +A++I FGLG S A D + R + D +Q S D+VV Sbjct: 115 AVSLLAKARRIHIFGLGHSGESARDYERTWLRIGLIANAESDPHIQVQVATLLSKDDLVV 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S +G TK+ + ++A+E A +IA+T+ +P+A+ +++ V E +I + Sbjct: 175 GLSLSGHTKDTYDSLKVAKEYGAKIIAITNDLTSPIAQLGDVSLQTSVSEFMNI-GTVAG 233 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +++QL + DVLA + ++ A+ + Sbjct: 234 QVSQLYLCDVLAREYEKLNKVDVDKIKEQALAAVMKKSI 272 >UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEV7_ACHLI Length = 281 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 7/282 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ + E LS +ER V + ++ + S+ +A A S +V R C+ + Sbjct: 1 MSVMLNMLKNKEALSMAERIVLDYLIENKTLLKDFSVEKIAEAAYTSPASVVRMCKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSV----ESYTGKIFESAMATLDHVRHSLDKS 116 GF DFK+ LAN + D + ++ K E+ + L+ + D+ Sbjct: 61 NGFKDFKIDFI--LANSKVEIPETSEYTDVILIKDQNNGKKAIENNIRALEETINLYDEK 118 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 +A L+ A+KI FG GSS V D K R N V + Q + ++ Sbjct: 119 TYTKAASLIMNARKILIFGKGSSFLVCKDLEMKLRRINKFCVAQGESHDQFVDASFINNK 178 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYM 235 DVV+ IS++G+TK ++ A LA+EN +I++T G+ LA + + + E Sbjct: 179 DVVIFISNSGKTKEIISSALLAKENKTPIISITRIGSSILADISDVVLYTSALESEFRSA 238 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR++Q++V+D L + L+ +K+ + Sbjct: 239 AMTSRISQMSVVDALYAKCAYTDIDRSIQALETTYRTIKKFK 280 >UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=Shigella flexneri 2002017 RepID=D2AGN5_SHIF2 Length = 333 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 8/266 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L KI++ + +E+K+A+ + A S MA + +S+ ++ +F + + Sbjct: 68 MLYLTKIRNAESEFTGNEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLGA 127 Query: 61 RGFPDFKLHLAQSLANGTP-------YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GF + ++ L + +++ ++ DDS+E K+ L+ Sbjct: 128 QGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALF 187 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + + ++++++A I GLG SA V D K + V D +Q Sbjct: 188 DYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQAL 247 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTD 232 GDV + IS++G K +V A+ AR+ A VIA+TS A +PL R A + E Sbjct: 248 KKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEW 307 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRR 258 M +R AQ +V D+L G + Sbjct: 308 RSSSMSTRTAQNSVTDLLFVGLVQHQ 333 >UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=1 Tax=Vibrio cholerae CT 5369-93 RepID=D0I0X8_VIBCH Length = 282 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 4/273 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N+L +++ +E S + VA+ I+++ D+A + +I +A + SE TV R CR + Sbjct: 7 VNLLSRLRYGMEGYSPKLKTVADFIVSNADSAQYLTITELARDTMTSEATVIRLCRDLGF 66 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +G+ DF++ LA ++ N +V ++D +SA+ +L +D+ INR Sbjct: 67 KGYSDFRMALAIEISQPQFTKNNDVAKEDG--DRIDDATQSAITSLQDTSILIDRKQINR 124 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ QA I G+G+S+ V + R +D + M + + D+ Sbjct: 125 ICQMIHQADNIHCVGVGASSIVGRYLSFRLTRIGKSSTMFEDTHIAAMRAVKSTPSDLWF 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G TK++V +A A++ + V++LT+ +PL+ + + PE S Sbjct: 185 AISSSGSTKDVVYVATRAKKQQSPVVSLTNIRHSPLSVTSDEVMVAARPEGPLTGGAFAS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 +++ L ++D+L A++ +++K E Sbjct: 245 KVSALLLVDILINQLVAEH-AEYAESVKDTAEV 276 >UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBM1_9CLOT Length = 266 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 132/277 (47%), Gaps = 12/277 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L ++Q + S E+ +A+ I+ D + +I +A E S T+ RF + + Sbjct: 1 MDILCEVQRKYNEFSDKEKDIADYIMQHGDKIKNINITDLAKEIGTSGATITRFAKKIGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ L G+ V +N++D + SYT ++ ++ + +DK I + Sbjct: 61 DSFVDMKIKL------GSNKVELPINDEDGIFSYT---YQYYNEVIERTKMLIDKEEIFK 111 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ + +AK I +G+GSS + M + R V D + ++ S+ D+V+ Sbjct: 112 VVNEIKKAKNIYIYGVGSSGLTCKEMMQRLLRMGFNVHCISDSHMMIINSSIVSENDLVI 171 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T+ ++ + ++EN A ++++T G+ +++ + + + P D + + Sbjct: 172 GISISGETQEVIHSLRKSKENGAKIVSITGFEGSTVSKYSDIKFIVYNPNFVDRSRFINT 231 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + + + ++D++ L + + ++ A+ + Sbjct: 232 QFSAMYLLDLI--SMVLLKDINLSNKMQTTINAIINN 266 >UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU Length = 312 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 125/285 (43%), Gaps = 8/285 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L K++ ++ S SE+ +A IL + + ++ S + +A S T+ R C+ ++ Sbjct: 1 MSLLRKLEMAVD-FSTSEKLIATYILKNGPDVLNMSTSQLAKATYTSPATITRLCQKLEY 59 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +G+ DFK+ L+ L N N + D++ + I A +++ +++D Sbjct: 60 KGYNDFKIALSAQLQYTFDRNSETNPNFPFKKRDTIHTIKHSIATLAKDSINLTVNNIDN 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + + +L QAK I +G+ +A D K FR V + + Q + Sbjct: 120 DILAKIIIMLDQAKVIDIYGVSGPLRIASDFQYKMFRIGKNVQIAPMVNEQLFQAAQSNK 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIY 234 +LIS++G T ++ A+L + +IA+TS G + L++ + LD E Sbjct: 180 DHCAILISYSGETNEVIAAAELLKRRKVPMIAITSFGESRLSKLCDYVLFLDSRERIYSK 239 Query: 235 MPMV-SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + S ++ ++D++ + R + + + Sbjct: 240 VSTFGSTISIHIMLDIIYSCLFARHYDENLELKLETDHIIDHRHI 284 >UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=Lactococcus lactis RepID=A2RL41_LACLM Length = 283 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 4/278 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ L I+ + + E+K+A+ I + + S +A E S + RF R + Sbjct: 1 MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGY 60 Query: 61 RGFPDFKLHLAQSLA--NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF K L+ S A + VN+ ++ S K+ ++ +L I Sbjct: 61 DGFSQLKQKLSASYAVHEDDEDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEI 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV L+ +A+ I FG+G+S+ VA D KF R V + D L S + Sbjct: 121 MAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHLFVSSLSISDRKTI 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 + IS G TK ++ELA++ R + +IA+TS + L + + + ED + Sbjct: 181 FIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA 240 Query: 238 V-SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 S +AQL V+D+L F + D L++ ++A+K Sbjct: 241 TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIK 278 >UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0W9_9CLOT Length = 310 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 139/281 (49%), Gaps = 6/281 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I ++ LSKSE+KVA+ I A ++ +A EA VSEP++ RF +S+ G Sbjct: 31 LLFRIATKYMALSKSEKKVADFIKNFNGKAEKLTMKKVAKEAGVSEPSIMRFSKSIGLDG 90 Query: 63 FPDFKLHLAQSLANGT----PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F + K L ++ + P ++N +D+++ GKI + ++ + S+ + Sbjct: 91 FNELKYCLMKTKKDDEGTMKPLHGFDINREDTIDMIPGKIVMTVENQINSMLESISLKSY 150 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + ++ + AK + + + +S + A+D K + V D LQ++S N + DV Sbjct: 151 SDMINCIINAKNVDIYSVENSVSSANDLATKLLYLGINVKMYTDSYLQKISAYNLTSEDV 210 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 + IS++G +K+ VE+ + A++ A + +T+ + + + A + I + + Sbjct: 211 AIGISYSGNSKDTVEMIKTAKKRGATTVVITNYKDSKIVKYADILICTSS-DQMLYGDAI 269 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR QL + D++ G K+ + L + ++A++ + Sbjct: 270 FSRAIQLVINDMIYMGIIHSDYDKYIEILNKNEKAIRNRGY 310 >UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBX8_9LACT Length = 285 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 4/283 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+ + L +SE+K+AE IL P I S +A EA S V RFCRS+ + Sbjct: 4 NVLLTIREKKITLPQSEKKIAETILRDPVKVIQMSATDLATEAGSSSAAVIRFCRSIGIK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + KL L+ + ++ D+++E K+ + + LD I R Sbjct: 64 GFTELKLQLSADSQGIKDNLYTDILADENLEQVKKKMLINTNHLFKETNNVLDTKQIERV 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +LL ++ I +GLG+S VA D KF R VV S D L S + V Sbjct: 124 SELLHESSIIYLYGLGASHIVASDIQQKFSRMGKIVVCSLDQHLLVTSMAVAGENAVFFG 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLD-VPEDTDIYMPMVS 239 +S++G K ++ L +A+E +ALT + L+ EA +A+ E +S Sbjct: 184 VSNSGEKKEVLALMIMAKELGLKTVALTNNTENALSLEADIALKTAFAHEAPLRSGATIS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 L Q+ +D+L + + NL++ K A++ R++++ Sbjct: 244 LLTQMYAVDILFYDYASKNYDLTVTNLEKSKAAIQ--RYNQKF 284 >UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MLD6_SALAR Length = 293 Score = 216 bits (550), Expect = 8e-55, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 117/287 (40%), Gaps = 4/287 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ + + L L +++ K+A IL P + + +A E VSE T+ RFC+ + Sbjct: 7 NVRVYLANILGSLGETDAKIAGYILQQPGLVVQFPVKKLAQEIGVSEATIVRFCKKVGYG 66 Query: 62 GFPDFKLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G + K L + L + ++ DDS KI + + LD + Sbjct: 67 GLLNLKADLKRELLAENDLSLPSSPDIFLDDSRNDVAQKIALTIETSARETIGLLDMKIV 126 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 V+ A+++ F G G+S A +A +K R + D + N D+ Sbjct: 127 KPVVERFLSARRVMFVGFGASGLAALEARDKMNRLGIDSDAFTDRFTMTLKLANLKRDDL 186 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 VV SH+G T +V +LA++ A +A+T S +PL A + Sbjct: 187 VVAFSHSGETPEVVNAFRLAQKKGAYTLAITHSPHSPLNELANTFWLTSGEAGPMQGDSI 246 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 +R++QL +I+ L T T +KE L + R ++ Sbjct: 247 STRISQLFIIEFLCTEITRHNLRDSGMTGLSIKEILIKERIKRESSG 293 >UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=Ralstonia RepID=B2UK47_RALPJ Length = 280 Score = 216 bits (550), Expect = 8e-55, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 2/226 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ E+I++ LS +ER+VA+ +L P + +AA+A EA VS+PTV RFCRSM Sbjct: 16 DLRERIRAARPSLSPAERQVADWVLRQPGTVLSLPVAAIAREAGVSQPTVIRFCRSMGCH 75 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFKL LAQ N R +V ++ + + L +R D A++ A Sbjct: 76 GLSDFKLRLAQ--GNAAHDKPRGAAAPSNVPRSGTRVLQDTIDALAAMRDRFDPLALDAA 133 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V L+ A +I +G GSS VA DA KFFR+ +P D L MS GDVV+ Sbjct: 134 VALVDTAHRIDLYGFGSSGVVARDAQTKFFRYGIPANAYSDPYLVSMSLNVLQAGDVVIA 193 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDV 227 IS +G L + RE VIA+T+ G+PLA A + + DV Sbjct: 194 ISKSGALPELQTAVERVRELGVHVIAVTAPGSPLAALADVVLPADV 239 >UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG49_SEBTE Length = 283 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 136/291 (46%), Gaps = 14/291 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ K++ ++ + +E A+ I++ D I S +A + S T+ R C+ + Sbjct: 1 MSLIIKLREA-KNFTPNEIGAAKYIISHSDEVIRLSCTELAKKTYTSPATIIRLCKKIGI 59 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ +FK+ LA + + N +++ DS+ KI ++ +L + DK Sbjct: 60 GGYQEFKVILATEINFFIKNSMEINKNNEIDKKDSISDIIDKISSLSIDSLKETKILTDK 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + +D++ A+ + +G G+S VA DA KF R Q + N ++ Sbjct: 120 NVVKSVIDMINNAEILDLYGSGASHFVALDANYKFMRIGKVTATYALYDQQYVQAKNSNE 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 ++ S++G T ++E+A++ EN A +I +T ++ L + A ++ + E+ Sbjct: 180 NHAAIIFSYSGETAEMIEIAKILTENKAKIITITKNSDNTLEKFADKSLYVTAKENLYRS 239 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNL 285 + SR++ L VID+L T + K EAL ++R K + L Sbjct: 240 AAIYSRISMLNVIDILYTAYFNLIYEKAL-------EALGKTRISKTEVKL 283 >UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus RepID=C2HLD1_LACAC Length = 284 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 136/282 (48%), Gaps = 2/282 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ I+ + L K E+ + + I+A+P+N I SSI ++ + +S T+ RFCR + T Sbjct: 3 NIFSIIKGKKSQLPKKEQLLGDYIIANPENVISSSIQKLSKDTGISTATIVRFCREIGTN 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D KL L + ++ + + + + + + ++ + L+ +++ +A Sbjct: 63 GFSDLKLQLVAAQSSVNNNDYHEFDAGEGIAAIKNTMAARFESAIEATQSGLNDNSVEKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V + + I +G G+S VA D KF R + Y D+ + + + D+++L Sbjct: 123 VRKIYNSSSILVYGAGASGIVASDMYQKFMRVGKNINYISDLHVALAQLASFTSDDLLIL 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITL-DVPEDTDIYMPMVS 239 IS+ G+T + ++ ++A + + LT + + +A++A L + D+ E + S Sbjct: 183 ISNDGKTTEVSDIQKVADKFGIPTLLLTANPRSFVAKKADLVLLTQDIGEPSIRSGATTS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 ++Q+ V+DVL + + LKR EA + ++ Sbjct: 243 LISQMFVVDVLVFSYVSVHSDEVLKKLKRSNEATAIHKNSRK 284 >UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C842_9FIRM Length = 276 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 116/277 (41%), Gaps = 3/277 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ I SE+K+A+ I+ P ++ +I +A N S+ +V+RF R Sbjct: 2 ILDTIHGHYNSFFDSEKKIADYIIQHPKEVVNMTIKQLAQACNTSQASVSRFARKCQMDS 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F K++LA+ N + ++ D + I + ++ L ++D + + Sbjct: 62 FHHLKVNLARDCVNEIEQKSNTISTSD-ISGSLETILSNKISELTATIRNIDVDQFSVIL 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ AK + +G++ VA D M KF + S Q + DVV+ I Sbjct: 121 SLIQNAKHVLVCAVGNTVPVALDCMFKFNEIGILTFTSTIWENQVSYALGLDSNDVVIAI 180 Query: 183 SHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S++G + ++ + + ++ I +T + + +A+E I E + SR+ Sbjct: 181 SNSGESSQVLAVCKEMKKRGVPTIGITNNEDSVVAKECVYHIQTSTREKLFLNEFCFSRI 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + T+I++L F D + + +E + Sbjct: 241 SAATIIEILY-LFLTNASDNSYDRISQCEELYASLKV 276 >UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKN4_PASMU Length = 286 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 8/282 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L K++ LS +E+++A+ IL P SS A+A + VS+ + +F + + Sbjct: 1 MGFLIKLKHTYPSLSPNEQRIADFILKHPHEVKSSSSKALANQIAVSQSAIIKFSQKLGA 60 Query: 61 RGFPDFKLHLAQSLANGTP------YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 F DFKL ++++L +++ ++ + D + K+F L Sbjct: 61 DKFSDFKLAISEALIRQETQSEPRVHLHDSITDKDDLSEIAEKLFVEKQQALKESLSLNA 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + R V+ L QAK+I G+G+SA VA D K + +PVV D + + Sbjct: 121 IPYVARVVEQLMQAKRIQLMGIGNSALVAKDFFYKLTKIGLPVVTETDTHASLAMSQSLT 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 D++ LIS +GR + ++ A+ A+ +IALT+ PL A + E T Sbjct: 181 PQDILFLISFSGRHREILLAAENAKARQIKIIALTALTTNPLHELADYLLYSVADESTFR 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR AQ + D+L G L++ D + + + + Sbjct: 241 SSSIASRTAQHAITDLLFMGI-LQQKEHANDLILESRALIGQ 281 >UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus RepID=Q03CT7_LACC3 Length = 289 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 129/281 (45%), Gaps = 4/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ QS LS++E+K+ + ++A + S+ +A A S +V+R R + Sbjct: 1 MSVKGNYQSTRSELSETEKKIVDYVMAHSQAVLTMSVHDLAKAAGTSPASVSRAARRLQF 60 Query: 61 RGFPDFKLHLAQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+ + K+ LA L T ++ + ++ ++ + K+ A +L ++++ ++ Sbjct: 61 SGYNELKMQLAADLKGDTNQSDDQEIQKNATLTTIKQKLLIDANQSLRETVDQINEANVD 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS-DGDV 178 ++L+ Q+ ++ FG+G+S A + K+ R P +SDD+ L + + Sbjct: 121 TIINLIHQSDRLLVFGVGASYLAAQNIAQKWGRLGYPCHFSDDLNLFLPLAATADVEQTL 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVP-EDTDIYMP 236 IS++G + +V A+LA++ VI T G L + A ++I P E + + Sbjct: 181 CWFISNSGESPEVVLAAKLAKKAGLQVIVTTKLGKNSLTKYADVSIQTSQPMEARNRFAA 240 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S Q +ID+L + R + + K A+ R Sbjct: 241 TQSLHTQFMLIDILYYAYVSRYYDAAKIATDQSKAAVTAYR 281 >UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteriaceae RepID=A4WDW6_ENT38 Length = 274 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 133/272 (48%), Gaps = 10/272 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++ + S +++K+ +L P ++ +I +A E++ SE +V R CR++ + Sbjct: 6 NLLLRLRQGVSGYSPTQQKLGSFVLNDPSRVLYLTITELARESDTSEASVTRLCRTLGCK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FK+ LA + + + + D ++ I E ++ L LD+ + +A Sbjct: 66 GYTEFKMALALDVQRE----HVPLKKGDEIDE----IVEESILALQDTSRLLDREILLKA 117 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L Q++ + +G+ +SA + K R P D+ M+ + D+VV Sbjct: 118 AQALHQSRSVYIYGVAASAIIGDYLHYKLLRLGKPAQLFSDMHRASMNATTLTSDDLVVA 177 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G T++L+ + +LAR+ A V+AL++ +PL + + + PE + ++ Sbjct: 178 ISSSGSTRDLLHVVKLARKRGAHVLALSNTPRSPLTSLSDMLLVAAKPEGPLSAGALNAK 237 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 + + ++++LAT ++ D ++ A Sbjct: 238 VGVMLLVELLATTMISLD-DRYGDASQQTASA 268 >UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=Firmicutes RepID=A6LRG7_CLOB8 Length = 291 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 142/278 (51%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L+KI + L ++E+K+A+ I+ + + I +++ +ALE++VSE T+ RFC+ D + Sbjct: 15 SVLDKILCIYKSLHEAEKKIADYIINNKERVIEMTVSELALESSVSEATIVRFCKKCDLK 74 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D K+ +A+ + N N + +++ I + + L +++ I R Sbjct: 75 GFYDLKIKIAKEMVNLKSSNISNELDSNNIMQSLQNILANKIEELKQTISMMNEGNIKRI 134 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++ + A+ + F +G++ VA D KF + + V + Q + DVV++ Sbjct: 135 LEAIKGARIVQFAAVGNTIPVAMDGAYKFNQLGISSVTNTIWETQLAFSYTLTKEDVVIV 194 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G +K LV L ++A E A I++T+ +P+A ++ I E + SR Sbjct: 195 ISNSGASKELVALLEIANERQATTISITNHENSPVANKSKYHINTSTREKLFLDEFSFSR 254 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 ++ + VI++L T R + + + ++++ E + Sbjct: 255 VSAMVVIEILYLLLT-RDKEDAYNWISQHEQSIAEGKI 291 >UniRef50_C7TGD6 Transcriptional regulator, RpiR family n=3 Tax=Lactobacillus rhamnosus RepID=C7TGD6_LACRL Length = 277 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 135/278 (48%), Gaps = 5/278 (1%) Query: 1 MNMLE-KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMD 59 MN + +I L ++ R+VA+ + +SS+ ++ + VS T++RF R + Sbjct: 1 MNTFDSRIAQVYSALGEASRQVADYFRHNYAKVANSSLRNLSDKIGVSTATISRFARQLG 60 Query: 60 TRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 F KL L + + N T N +V +D+ + K + +A L+ L + I+ Sbjct: 61 FASFDQLKLALLKEIDNTT---NGDVETNDNSLASARKTVNANIAALEGTLSFLTQDQID 117 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +V+LL A K+A FGLGSS +A A + F R + ++ +D +Q MS ++ DV Sbjct: 118 HSVNLLLDANKVALFGLGSSNVIAKAAYHTFLRLPLTLIADNDYHMQLMSANKLTEHDVA 177 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 ++ISHTG +++ L L + +IA+TS +PLA+ + + ++ Sbjct: 178 IVISHTGNDTDILALVDLLSAHQVPIIAVTSYATSPLAKRVSDVFFSISEDTRYRSDALI 237 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S +QL + DVL T R G + + V +A+ + Sbjct: 238 SMTSQLAIFDVLYTELVRRMGLQSEKTIALVHQAVAQK 275 >UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=Streptomyces RepID=B5HLI6_9ACTO Length = 317 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 118/280 (42%), Gaps = 6/280 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + K+++ +++S +VAE + A P ++ +A SE TV R R + G Sbjct: 35 LAAKVRTLGPSMTRSMHRVAEAVAADPAGCAALTVTGLAERTGTSEATVVRTARLLGYPG 94 Query: 63 FPDFKLHLAQSL----ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + D +L LA + P + ++ DD + K+ TL LD + + Sbjct: 95 YRDLRLALAGLAAQQQSGRAPAITTDIAVDDPIADVVAKLAYDEQQTLADTAAGLDTAQL 154 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV A++I +G+G+S VA D K R + D L + + GDV Sbjct: 155 GAAVAATASARRIDVYGVGASGLVAQDLTQKLLRIGLIAQAHSDPHLAVTNAVQLRSGDV 214 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDV-PEDTDIYMP 236 + I+H+G T +++E ++A E+ A +A+T + + A +T E Sbjct: 215 AIAITHSGATGDVIEPLRVAFEHGATTVAITGRPDGAVTQYADHVLTTSTARESELRPAA 274 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 M SR +QL V+D L G R L EAL Sbjct: 275 MSSRTSQLLVVDCLFVGVAQRTYETAAPALAASYEALAHR 314 >UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=Rhodobacteraceae RepID=Q1GCY7_SILST Length = 300 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 147/289 (50%), Gaps = 2/289 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ ++ + E+KVA+ + A + + +IA +A VS PTV RFCRSM Sbjct: 12 VDLISNLRELNGSFAAREQKVADFVSAHLEEISNMTIAELAGAVGVSTPTVVRFCRSMGC 71 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNE-DDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF +FKL LAQ+LA Y+ + E + ++ + AT++ +R L ++ Sbjct: 72 DGFREFKLRLAQNLAVSLQYLAPSQREVPEGGAGAVDQVLGALYATVNVMRQQLVPERLD 131 Query: 120 RAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 A L A +I G+G S VA +A N+ FR +P V D L +M GDV Sbjct: 132 AAAAALAAAGQIVVAGVGGGSTMVAQEAANRMFRLGIPAVSISDSYLLQMRAATLVKGDV 191 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 ++L+S +G +V A +A A V+A+ G+ LA+EAT+AI D+PED DI P Sbjct: 192 LLLVSASGAADEIVSAAAIAGGYGATVVAIARPGSRLAQEATVAIEADLPEDPDILKPTA 251 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 SR A L ++D LA R A +NL+R++ +L L D Sbjct: 252 SRYAHLVIVDALAMSVAQARTAATTENLRRIRASLTAYHGRTGPQPLGD 300 >UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus RepID=Q040R4_LACGA Length = 283 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 126/279 (45%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ K+ + + + +K+A+ +LA P + + S ++ RFC+ + Sbjct: 1 MDLSTKVLNNYPNFKGASKKIADYLLAHPKTFLQEDAQGLGKMTKTSAASMIRFCQQLGF 60 Query: 61 RGFPDFKLHLAQSL-ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +G DF++ LAQ + ++ V+ D+ K+ S + H +D A+N Sbjct: 61 KGLKDFQIQLAQDTPQDNEETIDPIVDHHDNPHIVLQKLLSSIEKNTEQTAHLIDGLALN 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A++ L A +I G+G+S+ A D KF R + VV++ DI + D + Sbjct: 121 QAINFLKNADRIYLAGVGASSLPAQDLYYKFIRSDKNVVFNQDIHIALERICYSHSTDAL 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMV 238 V+ S++G T+ ++ +A AR+N +I +T S +PL A + + + E + Sbjct: 181 VIFSYSGLTQEILLMADQARKNHTPIIVVTRSRQSPLVELADVVLGVSTDEKLLRVGAIN 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S +++ V VL + + + + + + + Sbjct: 241 SLFSEMFVSSVLFLATINQELPRLEERFRETELITNQLK 279 >UniRef50_A6DTP0 Putative transcriptional regulator, rpiR family protein (Fragment) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTP0_9BACT Length = 262 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 1/262 (0%) Query: 27 ASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVN 86 + + A ++SI MA +A VSE +V RF RS+ + PD K L S A G ++ +++ Sbjct: 1 SDLEWAGNASIHDMAAKAGVSEASVTRFSRSVGCKNVPDLKKALVSSFAIGQRFLEGHMD 60 Query: 87 EDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGS-SAAVAHD 145 G++ + + L+ V + I + L+ + +++ FG G S +A D Sbjct: 61 PITEESGAIGQVVKGIIEALNTVNTQTSQQKIEQTASLVNELERVVVFGSGGGSTVIADD 120 Query: 146 AMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMV 205 A+N+ FRF V + D ++QRM ++ +V++IS TG+ + E AQ+A++ A V Sbjct: 121 AVNRMFRFGVNITSYGDFLMQRMVAATLNEDSLVLVISTTGQIAEINESAQIAKQYGAKV 180 Query: 206 IALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDN 265 +A+T +PLA+ A + + + + ED IY SR A L VID +A + R ++ Sbjct: 181 VAITRGDSPLAQLADIHLEVHIQEDEGIYKATASRYALLAVIDAIALELAVLRKDSSKET 240 Query: 266 LKRVKEALKESRFDKQLLNLSD 287 L+R+K L R + + D Sbjct: 241 LRRIKYNLDAVRGGDRRFPVGD 262 >UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n=48 Tax=Gammaproteobacteria RepID=B5FDJ7_VIBFM Length = 283 Score = 213 bits (543), Expect = 5e-54, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 7/276 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+LEKIQ+Q +LS + K+ + IL P + S A+A + VS+ ++ + + + Sbjct: 1 MNILEKIQNQRSNLSSNGIKILDFILDDPASISSYSSQALAAKVGVSQSSIVKLTQRLGF 60 Query: 61 RGFPDFKLHLAQSLA------NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 +GF FKL + + L ++ +N DDS + K+ + L ++++ Sbjct: 61 KGFTAFKLAIIEDLGRKQAILEPERPIHNKINSDDSSLTIAQKLVQEKTHALIATTNAIN 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 S LL QA++I G+G SA A D K + + + D +Q + + Sbjct: 121 FSEFELVTTLLNQAQRIQIVGIGGSALTAKDLAFKLLKIGMTALTEQDSHVQIATANTLT 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 DV ++IS++G K ++ AQ A + A VIALTS +PL + A I E Sbjct: 181 KQDVQIVISYSGSRKEILMAAQTAMDKGATVIALTSTKKSPLRKLANFCIDTIADERQFR 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRV 269 + SR AQ + D+L + K + + + Sbjct: 241 SSSISSRTAQNVITDLLFMTLLQIKSDKAKLLIDEI 276 >UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2D0_9BACL Length = 284 Score = 213 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 131/273 (47%), Gaps = 2/273 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++++ LE L +SERK A+ IL + SI A+A +A S + R CRS+ Sbjct: 5 SVLTQMEAMLEQLPESERKAAQYILTASAEVSGLSIHAVADKAGTSAAAITRLCRSLGLS 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GFPD K+ L+ A ++ +++++ K +++ + + L I + Sbjct: 65 GFPDLKMRLSVDNAKPQRPGYYDIERGETIQNVIQKTVSNSLQAIQDMMLHLQPELIEQV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD +A I +G+G+SA VA DA K+ R D L + + G + + Sbjct: 125 VDSFREASVIHMYGVGASAIVAADAAQKWLRLGKQAFALQDEHLIAAALASAPPGALFMG 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITL-DVPEDTDIYMPMVS 239 IS++G TK +++L ++A++ I L+ G +A A L + PE T S Sbjct: 185 ISYSGNTKEVLQLFRVAQKYGVRTIGLSRFGNHKVAELADLMLYTPQAPEATLRSGASSS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 RLAQL +ID+L + + + L + EA Sbjct: 245 RLAQLVMIDILFFAYASTQYEETILRLSQTHEA 277 >UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Q9_9CLOT Length = 287 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 131/278 (47%), Gaps = 4/278 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANV-SEPTVNRFCRSMDTRG 62 L KI L+K ++++A+ IL +P ++ SI + ++ SE +V +F R + G Sbjct: 11 LAKISELYPQLTKGQKQLADYILKNPSEVVNKSITDLISHTSLKSEASVVKFYRLLGFDG 70 Query: 63 FPDFKLHLAQSLANGTPYVNR-NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F FK+ LAQ L N T Y + ++ DD K+F AM++L + A Sbjct: 71 FKSFKIKLAQELVNRTFYHSESDITIDDEPTEIKKKVFLGAMSSLSK-NADIAAGECMDA 129 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 LL+ AK+I G G+SA++ A + + V + D + + GDV++ Sbjct: 130 QKLLSSAKRIIILGHGASASICQYAFFRLTELGLNCVCNQDAHMNAAILTHPRPGDVILC 189 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G T +L + ++A + I +T G+ +AR + + ++ E + + SR Sbjct: 190 VSQSGETADLYKQIEMAYQRRIPAILITGAPGSSIARLSQVILSTVSEERNILTDALNSR 249 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 ++Q +ID L + ++ + L+ + K+ + Sbjct: 250 VSQFCLIDALFSMISIANANEMLPRLQDTRNTFKKYKL 287 >UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=Lactobacillus crispatus RepID=C2KD15_9LACO Length = 279 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 6/280 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L +Q++L L + ERK+A IL P ++I +A VS T+ RF R ++ Sbjct: 1 MTFLTDLQNRLPDLPQQERKIALFILQDPQFIQSANINQLASTIKVSNATITRFARRVNC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ LA + A+ + D+ ++ ++++ L ++ LD + + Sbjct: 61 SSFTDLKVKLAAAAASSQVN---TITNQDNSKTTAHQVYDFYNRVLSETQNKLDIKQLKK 117 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+ AK++ F+G+GSS + +A + R + + M+ S D+++ Sbjct: 118 IIQLIKSAKRVYFYGIGSSGYTSLEATQRLLRMGISAFAETESNNMFMTSSIISKDDLII 177 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS TG T +LV +LA++N A V+ALTS +PLA+ A + + + + + S Sbjct: 178 AISSTGSTDSLVRAIELAKKNKATVVALTSYDNSPLAQLADIVVGVQDTNYINDARFINS 237 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 + + + VIDV+ T L + K+ D + R ++ ++D Sbjct: 238 QFSIMYVIDVITT--LLLKNNKYHDRMTRTITSVLNEKYD 275 >UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n=3 Tax=Listeria monocytogenes RepID=C8JWL0_LISMO Length = 273 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 132/277 (47%), Gaps = 7/277 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L I S LSKSE+KVA++IL++PD + SI +AL ANV E T+ RF R + Sbjct: 1 MDLLATISSYFPSLSKSEQKVAQLILSNPDEVENLSINDLALMANVGESTIVRFSRKIGL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ L + + + NE + ++ + L + +++ + + Sbjct: 61 TGFQDLKIALVKYQTSQKQNITDESNEAKDL------VYRQFVDGLQDTKSFIEQEKLEQ 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A ++ +A+ + +G+SA +A N+ R V + D LQ + D+V+ Sbjct: 115 AAKMIHRAEHVYILSVGTSAFIAMQLSNRLKRLGKFVEFVPDGHLQSIYVTMVKKTDIVI 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G TK +++ +LA ++ A V+ L++ + +++ +++ E + Sbjct: 175 GISKSGNTKEVIQNIELASQSGAPVVTLSNFINSKISQMGDVSLVASSKEFLSDAGSFSA 234 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 ++QL ++D L + + + +AL + Sbjct: 235 EVSQLYLLDTLIKVLVDINPSSYHNIRSLTNKALVKR 271 >UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillales RepID=Q02YU6_LACLS Length = 273 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 8/277 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + I+ + E L+KSE+K+A +LAS + ++ ++ + V + T+ RFC+ + Sbjct: 1 MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ +A+ ++ + + + + S + L + LD + Sbjct: 61 SGFSDLKIEVAKE------SYSQKSSNRTDLTLFFDENENSIIEILHETKSKLDLEQFEK 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+++A I FG+G S A D F R VPV Q + D+++ Sbjct: 115 SSKLISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISGSHFQLQTAALLKKTDLII 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G+T L E ++A+E A +I +TS+ +PLA+ + + + V E+ + Sbjct: 175 GISLSGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQT-VNEEFFDGGSLTG 233 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +++QL + ++L K + + + A+ + Sbjct: 234 KISQLYICEILVKNHERLYKDKSIQSREAIIRAVMDK 270 >UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1Y9_BEUC1 Length = 307 Score = 210 bits (534), Expect = 6e-53, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 119/289 (41%), Gaps = 6/289 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L +++ L L S R+ AE +LA P ++ +I +A + S V+R CR + Sbjct: 16 GILAELRRLLPDLPDSVRRTAERVLADPVASVAGTITDLAEASGTSPSAVSRLCRRLGVD 75 Query: 62 GFPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+P ++ + ++R + DS+E G + + + LD Sbjct: 76 GYPALRIAVVADATASASSPWEIDISRTIGPTDSLEDVAGTLGAATSRAVHDTLAGLDLD 135 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + + A+++ +G+ SA + + + R + D+ G Sbjct: 136 VLRDVAHAVAGARRVHLYGVSGSAVMTAELQLRLHRIGIATWSFADVHEGLTGAALLGPG 195 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM 235 DV + +S+TG T +E+ + A DA+ +A+T + LA A + E T Sbjct: 196 DVAIAVSYTGETIETLEMLRAAGSRDALTVAVTGAPRSSLAAVADRILVTVTEETTFREG 255 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 P+ +R ++LTV+++L + + L + A++ + + Sbjct: 256 PLAARFSELTVVELLYLAVGQLTYERTTELLTQTALAVRRHQAGRTERK 304 >UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=Alphaproteobacteria RepID=Q28KP3_JANSC Length = 306 Score = 209 bits (533), Expect = 7e-53, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 4/247 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++L +Q+QL LS +R++A+ IL PD S +A A S+ +V +FC+ + Sbjct: 26 LSILTIMQAQLPTLSAGDRQIADTILGDPDRMARLSSGELARAAGRSQSSVVKFCQKLGF 85 Query: 61 RGFPDFKLHLAQSLANGTPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+ D +L + ++ A V+ ++ D K+ S + L Sbjct: 86 SGYQDLRLAVTRAAATQKAPNDAVHSSIEVSDDASMTAQKLLASKIHALQETLSINPAKN 145 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 ++ A D L A ++ G+G+S+ VA D + K + + V++ D +Q + D Sbjct: 146 LDAARDALNGAARVQLSGVGASSLVARDFVYKLQKLGISVLFDADSHIQMAHSATLTPDD 205 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMP 236 V+V +S +G + + +A+ A + A +I +T PLA A A+ ED Sbjct: 206 VLVSLSQSGFSLETLRIAEAAAKRGATIITVTGLHPNPLADVADKALCTVTDEDQVRSSA 265 Query: 237 MVSRLAQ 243 + SR AQ Sbjct: 266 ITSRDAQ 272 >UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=Lactococcus lactis subsp. lactis KF147 RepID=D2BPE4_LACLK Length = 273 Score = 209 bits (533), Expect = 7e-53, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 145/279 (51%), Gaps = 7/279 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L++IQ ++ +SE+K+AE IL +P I IA +A +NVSE +++RFC+ ++ Sbjct: 1 MNILDQIQVNFQNFFESEKKIAEFILKNPKKVIDMPIALLARNSNVSEASISRFCKKLNL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ LA+ N N VN++ S+ I + L +LD + Sbjct: 61 TGFHQLKIELARIQDNE----NIKVNKNTSLNELIKNISKIKTTELIAATDNLDIDNLQS 116 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + ++T K F G++ VA DA +F + + V DD +Q +N D+++ Sbjct: 117 IIKIITNVKLTHFVASGNTIPVAEDASYRFNQLGITSVVFDDWQVQTAFTLNMRKEDLLI 176 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +IS++G +K+L++L +A+E +I++T+ +P+AR + +T + S Sbjct: 177 VISNSGESKSLIKLINIAKEKKIPIISITNHPDSPIARLSNFHLTSFSRDYFFHNDYYFS 236 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 RL+ + +I+++ L + +N+K ++ + E++ Sbjct: 237 RLSAMYLIELIF--LILSQDKSRLENIKLHEQIISEAKL 273 >UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF8_9LACT Length = 283 Score = 209 bits (533), Expect = 7e-53, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 127/277 (45%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +I+S L+ L SERK+ E IL P+ I + + + + A + V R C + Sbjct: 5 NILGRIKSVLDDLPNSERKIGEYILTYPEETIKMTTSQLGIAAESNSTAVIRLCNRIGVN 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K++L+ + + + ++++ + K+ +A +++ +++ I R Sbjct: 65 GFTKLKVNLSAEIVSVDESGYAEIEAEETIGTIKNKLLTNAFKSMEETISLMNEFDIERV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++L+ A + +G+G+S +A + + K+ R V+ D + Sbjct: 125 IELIESASMVYVYGVGNSRIIAENMVQKWSRVGKIVICPTDNHQLVSMLGAAPKNALFFG 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T+ ++EL +LA++ + LT G L +A I ++D S Sbjct: 185 ISNSGETREIIELIKLAKKCSLKTVGLTQFGQNSLTNKADYTIQTVKTIESDSQFISSSL 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 AQL IDVL F + + +K+ +E + + + Sbjct: 245 HAQLIAIDVLFYSFLSKNYVAGTERIKQSREEMNQYK 281 >UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VMT8_LACPJ Length = 282 Score = 209 bits (533), Expect = 8e-53, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 5/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM-DT 60 ++L I ++LE+ SK+E+K+ IL + I S A +A VS TV RF +++ Sbjct: 3 SVLFTIHNRLENFSKAEQKIGRYILDHTNAVIKMSTAELAAATGVSTATVARFGKTLIPD 62 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G+P KL L+ + + +N DS+++ K+ T+D SLD +A+ Sbjct: 63 GGYPALKLRLSAE-STVDQTLYDEINPKDSLDAIKSKLALRITHTIDETNRSLDDAALQA 121 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A L+ + +GLG+S VA D KF R V++S D L + V++ Sbjct: 122 ASQLIADKASVYVYGLGASNVVATDFEQKFIRIGKAVIHSQDPHLLAVGMTTQRQNVVLL 181 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPED--TDIYMPM 237 LIS++G + LA LA + VI L+ +A + L + A + + D E+ T Sbjct: 182 LISNSGEKSESIRLANLAHSINVPVIVLSRNATSTLGKLADIILINDDSEENQTARAAAT 241 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S +AQL V+D+L F + L +EA+KE+ Sbjct: 242 TSLMAQLYVVDLLYYTFITNDYERHIKQLVASREAIKEN 280 >UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XVK6_9LACO Length = 280 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 11/275 (4%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 +E++Q+ +L + E+KVA V L P+ +I +A +A V TV+RF + + + F Sbjct: 1 MEQVQNLFINLPRQEKKVARVTLQKPELVRRMNITELANQAGVGVATVSRFTKRVGCKNF 60 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 DFKL L +NV+ + + +Y KI L + + +A + Sbjct: 61 ADFKLALVT-PDTMQRESEQNVSTPNDIHNYYQKI-------LAETMAMVSTKQLRQAAN 112 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L+ AK++ FG+GSS A + + R P + + ++ D D+V+ +S Sbjct: 113 LIHGAKRVYVFGIGSSGYNAQEFAQRLMRMGKPAFAMTESNMMTIASATMQDNDIVIALS 172 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMPMVSRLA 242 +G T + + +R+N A +IA+T+ L + + L + E Y + S+ A Sbjct: 173 VSGSTPEVCSAVRDSRKNGATIIAVTAFKNSLLGKMSDLLFQIKSTELVGDYDFINSQFA 232 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 VID+L L + FR + + EA+ ++ Sbjct: 233 VTYVIDMLTQ--MLLQFTDFRATMNKTVEAILVTK 265 >UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HWK5_9FIRM Length = 297 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 144/276 (52%), Gaps = 5/276 (1%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I S+ +K+E AE L D ++ +I+ +A E S ++ +F + + +G+ DF Sbjct: 21 ILSKKSTFTKTENFYAEYFLKLDDEILNKTISNVAEETESSTASIFKFIKKLGFKGYKDF 80 Query: 67 KLHLAQSLANGTP----YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 +L+LA ++ + +VNE+DS + KI + ++ ++ + + Sbjct: 81 QLNLATNINKNSDDSLLTAITSVNENDSPDEIANKIMAFNIQSMYTLKEDIKNIPFESCL 140 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +L+ ++KKI FFG+G SA +A+D+ +KF R V Y D +Q +C D + + Sbjct: 141 NLIKKSKKIHFFGMGGSATIAYDSYHKFLRTKYMVNYISDSHMQLSACTKMDQNDCIFVF 200 Query: 183 SHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+GRT ++E++++A++N A +IALT + + + + + A+ L E + +R+ Sbjct: 201 SHSGRTLEVIEVSKVAKKNKAKIIALTGNPKSEMVKISDEAMILPSIESEHGTESLNARI 260 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 LTV+D+L + + +K+ +ALK ++ Sbjct: 261 LYLTVMDILLISLMYDNVEENKKYMKKRLDALKVTK 296 >UniRef50_UPI0000D541FA probable transcriptional regulator n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D541FA Length = 207 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 77/203 (37%), Positives = 119/203 (58%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I++ L L KSE+KV E IL P + I A + +SEPT+ RFC+++ G Sbjct: 5 LLRQIKNSLSDLRKSEQKVGEFILNDPKSVITMKTAEASSAMGISEPTLIRFCKAIGFTG 64 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F D K++L+Q LA +V +NEDDS+ K+F+++++ + +VR +D+ + A+ Sbjct: 65 FQDLKINLSQQLAADDYFVMYEINEDDSIHELCEKVFDTSISEILNVRSQIDQDILENAI 124 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 + L AK++ F+ G SA VA D +KFFR +P Y D LQ MS + DVVV I Sbjct: 125 ETLVNAKRVEFYAFGGSAPVAMDGQHKFFRLKIPSSYISDPHLQFMSANSLERDDVVVAI 184 Query: 183 SHTGRTKNLVELAQLARENDAMV 205 S +G T L+E ++ R+N A V Sbjct: 185 SQSGTTTALIESVKIVRKNGAKV 207 >UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BCAC Length = 283 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 70/268 (26%), Positives = 134/268 (50%), Gaps = 3/268 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++ + LS E++VAE I+A+ N SI ++A E VS T+ R C + +GF D Sbjct: 5 KLREARDSLSTKEKQVAEYIIANKKNMQSMSIQSLAQENKVSTTTILRLCHKLGYQGFSD 64 Query: 66 FKLHLAQSLANGT--PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 K+ L S+ + + + +++ +DS+E+ K+ ++++ ++ +A A + Sbjct: 65 LKIDLISSINHKSYGTLLQEDIDINDSMETVNHKVGLIEKSSIEETCALVNLNAFKLANE 124 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L++++KKI +G GSS VA + + + V D +Q D+V++IS Sbjct: 125 LISKSKKIVIYGAGSSGLVAKEFEYQLIKIKKDVNCHLDYSIQFSIVNTLDQNDLVIVIS 184 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLA 242 H+G ++L LARE IA+T G + ++ A + E +P+ S+++ Sbjct: 185 HSGENHECIKLLTLARELKVPTIAITKMGQSSVSSLAETVLHTISTEHVSRLIPIRSKIS 244 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVK 270 QLTVI++L T +++ + + Sbjct: 245 QLTVINMLITNLFIKQYDERIQKQISTR 272 >UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCR9_9FIRM Length = 289 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 140/279 (50%), Gaps = 6/279 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I+S + LSKSE+K+ IL P + S +A++ ++SEPT+ RF R + +G Sbjct: 6 ILTRIESLMPFLSKSEQKLGNYILTHPKDVTDMSTSALSQACDISEPTLIRFTRRLGFQG 65 Query: 63 FPDFKLHL-AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + DFKLHL A ++N VN +DS K+ + +L+ ++LD + + A Sbjct: 66 YKDFKLHLSANFISNQIDSTPVKVNLNDSAIEIYRKLASFTINSLNSTLNTLDANDLENA 125 Query: 122 VDLLTQA----KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + + A +KI G+G+S + H+ K R N+ ++ +DI L+ +C N D Sbjct: 126 TNYIYVAAKQNRKIFLSGMGASTVLIHEFQIKMMRLNIQTIFFEDIHLRLEACANLKKND 185 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMP 236 + + + G +K EL +A E A +I +T G +A +A +A+ + E+ Sbjct: 186 LFICFTTLGASKENYELIDIAHERKAKIIVITQFGNSQIAEKADIALYTSIIENNLRLAS 245 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 S + Q VIDVL + A +++K +E K+ Sbjct: 246 QTSIILQSMVIDVLFLTIACKDYASITNSVKDFREKFKQ 284 >UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK55_BACSK Length = 268 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 130/276 (47%), Gaps = 14/276 (5%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++IQ LS +E+++A+ ++++P+ + I +A + +VS T+ RFCR + Sbjct: 4 MLQQIQVNYHALSAAEKRIADYVMSAPEELANIHIKDLAAKCSVSVATITRFCRKVGAAN 63 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F +FK+ + S + ++ ++ A + R +++ I +A Sbjct: 64 FVEFKMSVRDS-----------IRTEEEGGELIAEMESIYKAIIGGSRELINQDDIVQAA 112 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A +I +G+GSS + + R + V D M+ + DVV+ I Sbjct: 113 TLLENANRIEIYGIGSSGLSGQEMKFRLMRMGMRVDCHIDSHTMVMNASLLTAADVVLAI 172 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S++G T ++ E LA+EN A VI LT+ TPL+ A L + P+ + ++L Sbjct: 173 SNSGHTVDIQEAVALAKENGATVILLTNHEHTPLSEMADLLLLSFSPKPFYARGFLNAQL 232 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + + V+D++ L + + ++ AL + + Sbjct: 233 SIVHVLDLI--SLVLAQNEERAKARRKTLHALSQLK 266 >UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D858_9CLOT Length = 275 Score = 207 bits (527), Expect = 4e-52, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 3/255 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++ + L ER+ AE +L S IA +A EA VSE TV R C M G + Sbjct: 12 KLRGVIGSLGAQERRFAEYLLNSFAGIEKEPIAVLAKEAQVSEATVVRVCHKMGYSGLKE 71 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 K+ +A+ + + ++ ++F A+ L + +D+ + +A +L Sbjct: 72 LKIVVARENETAGSFDGGIGGQ--YMDELKERVFMGAIRALQDTMNLIDEDEVEKATKVL 129 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A I+ +G+G S VA ++ + +P ++ ++ + GDV + ISH+ Sbjct: 130 CNANYISIYGVGGSVPVARSLKHQLMKLGIPSNVYNEFQPTIIAAEKYNKGDVAIGISHS 189 Query: 186 GRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV-SRLAQL 244 G + +VE ++AR A I +TS G + E +R+AQ Sbjct: 190 GESSQVVEALRIARGKGATTICITSYGDSAITHCSDVKFFTTSETLLNGGDNSLARIAQT 249 Query: 245 TVIDVLATGFTLRRG 259 ++I++L L+ Sbjct: 250 SIINLLYLNVALKYN 264 >UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=Enterococcus RepID=C0X6G8_ENTFA Length = 283 Score = 206 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 131/281 (46%), Gaps = 4/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + I+ + + SK +++A+ IL P + + +A + S +V RF + + Sbjct: 1 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF 60 Query: 61 RGFPDFKLHLA--QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + + KL +A Q+ +NG ++ V DDSV++ K+ AT++ + +++DK A+ Sbjct: 61 DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA+ + +A+KI G+G+S+ ++ +KF R +++ D + + D+ Sbjct: 121 ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMPM 237 ++ +S++G TK + ++A+ A VI +TS + + + + E + Sbjct: 181 LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVRSLSDEVLLVPNNEHLIRVGAI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGA-KFRDNLKRVKEALKESR 277 S + + + DVL G + N+ + + + Sbjct: 241 SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLK 281 >UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCD92E Length = 288 Score = 206 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 7/269 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++LEKI S L +E+++A+ +L + + +++ +A S+ TV RFC+ Sbjct: 5 VSILEKIFSIYPVLFDAEKRLADYVLQNEAKVVDMTVSDLAAACGTSDATVVRFCKKCGC 64 Query: 61 RGFPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 GF K+++A+ +A +G P V N + ++ IF S L +D + Sbjct: 65 NGFHHLKINMAKEMATKPSDGAPIVGSNELDCARMDVSLRNIFASKQEELRQTLAEIDPA 124 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 V+ + A+ I +G++ VA DA KF + + + + Sbjct: 125 VFRSVVERIRAARFIFCAAMGNTIPVAMDAAYKFNELGLTAISAPVWENMLAMMHTATPD 184 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 DV++ IS +G TK+L+ + AR A ++ +T+ + +AR + + E Sbjct: 185 DVLLAISASGETKDLMRIVSAARGRGAYIVLVTNQVHSSIARVSDRVLHAVSQERMFFRT 244 Query: 236 PMVS--RLAQLTVIDVLATGFTLRRGAKF 262 S RL+ VI+ + + Sbjct: 245 FSFSSTRLSMTAVIEAVYYMLLSVKRDSS 273 >UniRef50_Q89XK4 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89XK4_BRAJA Length = 318 Score = 206 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 96/277 (34%), Positives = 148/277 (53%), Gaps = 3/277 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ I+ LS SE++VA +LA + AIH+S A +A A VSEPTV RF RS+ R Sbjct: 30 DIISVIRQSAPSLSPSEQRVAMALLADVEFAIHASNAELARSARVSEPTVTRFSRSVGCR 89 Query: 62 GFPDFKLHLAQSLANGTPYVN--RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G D K+ LAQ++A G YV +V D + + +F+ + L K I Sbjct: 90 GVRDLKVRLAQAMAVGRIYVELPPHVGTDLARPALWRSVFQEIRRAIAAAEEGLRKEDIE 149 Query: 120 RAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA + +++ K+A FG+G S A + N+FFR + V ++ D L RM + DV Sbjct: 150 RAAEAISRCSKLAAFGVGGGSTLAAMEVQNRFFRLGIAVSHTSDPSLMRMIAATLGEEDV 209 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 VV IS TG ++E A +A++ A+V+A+T + LA A +A+ + VPE D P Sbjct: 210 VVAISTTGAASEVIEAAGIAKQYGALVVAITRPQSRLASIADIALGVHVPEAPDALKPTA 269 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 SR A L ID+LA + + + ++R+K L + Sbjct: 270 SRYALLAAIDLLAASTAYCKPLEAQTRMRRIKYELLK 306 >UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, RpiR family n=15 Tax=Firmicutes RepID=Q71VW8_LISMF Length = 268 Score = 206 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 123/276 (44%), Gaps = 12/276 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L +IQ L E+++A+ IL D + +I +A E S T+ RFCR + Sbjct: 1 MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ + N + ++ DD E ++ +D+ ++ + I Sbjct: 61 DSFVDLKMRV-----NTAATMVPSLGYDDLFEE----VYSFYHKVIDNTVKLIEPAKIRE 111 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V + +AK++ G+GSS A + + R + V+ +D + ++ + D V+ Sbjct: 112 VVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIITSSITTKEDFVI 171 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G T LV ++A++N + V TS + + + + I + S Sbjct: 172 GISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANS 231 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + + + V+D++ L + +RDN+++ + + Sbjct: 232 QFSIMYVMDII--SMMLLQNESYRDNMEKTINTVTD 265 >UniRef50_P46117 Uncharacterized HTH-type transcriptional regulator in aarA 3'region n=5 Tax=Enterobacteriaceae RepID=YARA_PROST Length = 282 Score = 206 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 131/278 (47%), Gaps = 3/278 (1%) Query: 1 MNMLE-KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMD 59 M+ L K++S L +E+++A +L S DN + ++A +A A VS +V RF R M Sbjct: 3 MSTLTSKLESLLNRGKGTEQRLARFLLDSRDNFVAMNVAELAQAAGVSSASVIRFTRQMG 62 Query: 60 TRGFPDFKL-HLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 RG+ DFK+ +L+ ++ ++N D E K + + ++ LD + + Sbjct: 63 YRGYSDFKVDYLSDEKQYKAESLSGSLNPYDDTEQIIAKSGQMFITAIEKSLELLDPNTM 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + + +AK+I FG+G+SA VA+D K R N ++S D+ +Q N D+ Sbjct: 123 DEIAQKIVEAKRIVLFGVGTSAIVAYDIFYKLIRVNKYALFSPDLHVQLSYSSNVDADDL 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLA-REATLAITLDVPEDTDIYMPM 237 V+ I+ G T ++ + +LA + I LT G A R A L + E + Sbjct: 183 VIAITAKGNTPDINHMLKLANKKGCSTIVLTRFGQDEAVRLADLVLPYFYDEQLFQTGVI 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 ++ Q+ V D L + L++ +EA+ + Sbjct: 243 TPQVLQMVVFDTLFFKYLTLTNEDVVLALQKEREAIIQ 280 >UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15N75_PSEA6 Length = 282 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 142/280 (50%), Gaps = 4/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ KI++ + LS SE K+A+ +L+S + S +A VS+ +V +F + + Sbjct: 1 MSTFTKIKAIKDTLSNSELKLAKFVLSSSNAVRDLSSQELANVVGVSQSSVVKFAQKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G+P FKL + +L + ++ + +DS + + K+ S +A L ++ +++A Sbjct: 61 KGYPAFKLGVIDALNSTASEGNLHGKITLNDSFKQVSEKLLSSKVAVLTETKNLNEEAAF 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 ++AV+LL AK+I GLG SA V D K + + + D+ Q S+ D+ Sbjct: 121 HQAVELLKSAKRILICGLGGSALVGKDFSYKLQKLGMLAIEEPDMHAQLAFAATLSENDL 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 V IS +G T+ +V + + A++N VI +T G TP++ A + + E++ + Sbjct: 181 VFAISESGSTREIVNVVKQAKQNSCKVITVTRYGATPVSDLADIKLYSVAEEESARLSSI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++R AQ +ID+L T + R L++ + + R Sbjct: 241 MARTAQEFIIDILFIAITQS-SRQGRQLLEKTNSVVSDFR 279 >UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AK74_SEBTE Length = 284 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 124/274 (45%), Gaps = 3/274 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++S L+KSE+K+A I+ + + + ++ + NV + TV RF + + F + Sbjct: 13 KLKSVYNDLTKSEKKIANFIMKNFEKTKTMTSYDISKKVNVGQATVIRFSKKLGYSSFNE 72 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 + + + + +N++ D + + KI + + ++ + Sbjct: 73 LINSINK--LDQEDILEKNISLGDDIATTNTKIANQYIDVIKLTLELNPVYVFEEVIEAI 130 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A++I G+G+SA V+ D +NK R + + D LQ N D+++LIS + Sbjct: 131 IAAERIVVLGIGNSAIVSTDFVNKLARVGMNAFTNLDTHLQFSMISNLGKNDLLILISDS 190 Query: 186 GRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T+ ++E A+LA++N +I++T L + + + SR+ Q Sbjct: 191 GETREIIEAAKLAKQNKTRIISITKFTKNKLHAYSDFILKTASFDINLRLDATTSRITQF 250 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 T+ID++ +K+++ + A+K ++ Sbjct: 251 TIIDMIFINILKTDFSKYKEIITNSDNAVKLLKY 284 >UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=Clostridiales RepID=A3DDB2_CLOTH Length = 299 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 10/286 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L++IQ+ + SK ++ +A I+ D A + + A + E VSE TV RF + Sbjct: 8 DLLKRIQAGMPGFSKGQKLIANFIINHYDKAAYMTAAKLGEEVGVSESTVVRFANEIGFD 67 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVES--YTGKIFESAMATLDHVRHSLDKSAIN 119 G+P + L + + V R + + +S M + +D+ + N Sbjct: 68 GYPKLQKVLREMNKSKLTAVQRIEVTSSRINEGNILKSVLQSDMEKIKATLEEIDQESFN 127 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRF--NVPVVYSDDIVLQRMSCMNCSDGD 177 V + A+KI G+ SSA +A F NV +V++ + ++ S GD Sbjct: 128 NIVKSILNARKIYILGVRSSAPLASFLGFYFNLIFDNVRLVHTTSVSEMFEQIIHASRGD 187 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 VV+ IS +K + + A+ A V+A+T S +PLA+ A IT +D+ Sbjct: 188 VVIGISFPRYSKRTINAMRFAQNQGATVVAITDSLYSPLAKNADHVITA----RSDMASF 243 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR-FDKQ 281 + S +A L+VI+ L + R ++ +R+++ E + ++KQ Sbjct: 244 VDSLVAPLSVINALIVAIGMSRKPHVQETFERLEKIWDEYKVYEKQ 289 >UniRef50_P37767 Uncharacterized HTH-type transcriptional regulator yfhH n=149 Tax=Enterobacteriaceae RepID=YFHH_ECOLI Length = 282 Score = 206 bits (524), Expect = 8e-52, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 126/280 (45%), Gaps = 5/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN L +I+ + + L++S++K+A+ +L PD A H S +A EA VS+ +V +F + + Sbjct: 1 MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPY----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 +GFP KL L+++LA+ ++ + DD + K+ + A + + + Sbjct: 61 KGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEE 120 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 ++ V +L A++I G+G+S VA + K + D+ + S Sbjct: 121 KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPD 180 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 D+++ IS+TG + L A V+A+T L + A+ + E Sbjct: 181 DLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA 240 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + + AQ + D+L + + ++ + +K+ Sbjct: 241 SISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKK 280 >UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RDU7_9FIRM Length = 281 Score = 206 bits (524), Expect = 8e-52, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 119/275 (43%), Gaps = 7/275 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L K++ LS SE +V IL + I S +A ++ S TV R C+ ++ Sbjct: 3 MSVLVKLRE-YHTLSNSENEVRMYILRNSKKVISMSTQELAAKSYTSPATVIRLCKRLEL 61 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +G+ + K+ LA + N + DS+ K+ + ++ +++ R LD Sbjct: 62 KGYSELKIQLASEIKAFETMNLDVVDQTTFKKGDSLTELIDKVTDISIHSIEETRLLLDY 121 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + A I +G+G+S +A DA KF R + I QR+ +N Sbjct: 122 EVLLCVARQIMDASIIDLYGVGASNNIAFDAGYKFMRIGKSISCLSLIDRQRIQAINSDS 181 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 ++IS++G T ++E+A++ +N+ +++T S L + + E Sbjct: 182 SHFAIIISYSGETPEIIEIAKILEKNNVPAVSITGSIQNQLVNLVEYNLFVSSRESNFRN 241 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRV 269 +VSR + L ++D++ L + Sbjct: 242 GAIVSRTSTLYMLDLIYITCISLNYDDSAKRLGQT 276 >UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FU45_9FIRM Length = 277 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 129/274 (47%), Gaps = 11/274 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +LE+I++ HLS E+ +A I+ + +I+ MA E VS T+ RFCR + Sbjct: 1 MGVLERIEANFVHLSPKEQLLATYIMQESPYFTNITISEMAKETGVSAATITRFCRKVGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ L S ++N + D+V + +I + + + + Sbjct: 61 ESFVDLKIQLQASEGESASN-HQNHDMFDTVSEFYNRI-------IQRTSELQSEYQLRQ 112 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + +L+QA +I +G+GSS A + + R +P D + +S DVV+ Sbjct: 113 LIQVLSQANRIMVYGMGSSGLTARELAIRLSRMGLPATSETDSHMMIISSTVTRSSDVVI 172 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G TK++++ A++N A+++A+TS G+ LA+ A + + + + + Sbjct: 173 AISNSGETKDVIDALGNAKQNGAILVAITSMKGSSLAKLADETLLVHNSRFVNSEFFVNT 232 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 +L +ID + + F N+++ + + Sbjct: 233 QLPIFFLIDAI--TLMMLENPVFSQNMQKTIQEI 264 >UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=Lactobacillales RepID=D0RS60_9STRE Length = 277 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 118/281 (41%), Gaps = 11/281 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+S L+ E+K+A+ L++ S A++ VS P++ RF + Sbjct: 4 NILPVIESVYGSLTHLEKKIADYFLSAEALTADLSAQAVSQRLYVSVPSLTRFAKKCGFS 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ F +S + +NV+ D T + L+ +D+ R Sbjct: 64 GYRQFIFEFQESSSES-----KNVSRD-----LTRNVLSDYGELLNKTFSLIDEEQFLRV 113 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 D+L A ++ +G GSS VA + +F R + D + RM+ + + +V+ Sbjct: 114 GDMLNNAGRVYIYGQGSSGLVAREMEFRFMRLGMVCKAITDDHMIRMNRVMLNPDCLVIG 173 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G TK + + Q A++ A + +TS + L ++ + + V + + + Sbjct: 174 ISISGETKIITQAIQNAKKVGAKTVLVTSNNSDDLRQQCDELVLVAVKKHLAQGNNISPQ 233 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 L V+D+ + AL+E++ DK+ Sbjct: 234 FPVLVVMDIFYAYYMDLDRDHRSQIFTNTLSALEENQEDKE 274 >UniRef50_C0Q155 Protein rpiR n=2 Tax=Salmonella enterica RepID=C0Q155_SALPC Length = 293 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 121/278 (43%), Gaps = 10/278 (3%) Query: 8 QSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFK 67 ++ L K ER +A I +P + SI +A VS ++ + + + GF D K Sbjct: 15 KTLAPELGKKERAIARFIHDNPQTLSNMSITDIAHYLKVSVSSITKVSKKLGFTGFHDLK 74 Query: 68 LHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA----MATLDHVRHSLDKSAINRAVD 123 L +++++ N V+ V D E + KIFES + L + +D S I Sbjct: 75 LSISKNINNNEDTVDIPVIPDS--EGFIEKIFESTLLNSILALQEALNVIDCSIIKSVAW 132 Query: 124 LLTQAK---KIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 L KI G G SA++ D +K + + D Q MS GD+++ Sbjct: 133 LFIHKNAEAKIFIAGCGGSASICDDFNHKLLKIGIFSTVFSDSHKQLMSASLMRQGDILL 192 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +SH+G+T +++++ +A E A I LT+ +PL+ +I V + + Sbjct: 193 AVSHSGQTSDIIQMVNIANERGAETICLTNYPNSPLSLICRHSIISAVKNNPITGENATT 252 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R+ L ++D + T + +++L + A+ R Sbjct: 253 RIVHLNILDAIFTIIASKTSEITKNSLLSTRNAVISKR 290 >UniRef50_A4CAD1 Transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CAD1_9GAMM Length = 283 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 151/288 (52%), Gaps = 6/288 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +I+ +L HL +SE+ VA++IL + A +SI +A ANVS ++ R +++D Sbjct: 1 MDIVSRIKERLGHLRQSEQLVAQLILENLQFAASASIGELAQRANVSHASITRLAKALDC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 D KL LAQSLA G +++ N ++ + + + I A LD + ++ + Sbjct: 61 DNVRDMKLQLAQSLAVGERFISENNSQREDIPAIYKAIH----AILDLNAGLIAQTQVEE 116 Query: 121 AVDLLTQAKKIAFFGL-GSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A + ++ FG+ G S+ VA + N+ FR +V D V+ RM+ + DVV Sbjct: 117 AARCIASSRHTLIFGVGGGSSVVAQECHNRLFRLDVLSNAYSDPVMMRMTAASVDVCDVV 176 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 V++S TG ++L++ A +A++ A VIA+ + LA AT + + E I+ P + Sbjct: 177 VVLSLTGLPQDLIDAASIAKDYGAKVIAIC-PDSALADVATFHLPIKTNESDYIFTPSTA 235 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R A L +DVLA+ + K R+ L+R+K L E R L D Sbjct: 236 RYAMLAAVDVLASEVAILTQKKSREKLRRIKHELDEYRQGPNRTPLGD 283 >UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UGP6_SINMW Length = 284 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 5/275 (1%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 +++S L LS +ER+VA +L + D +I S++A+A +VS+ TV R CR+ GF Sbjct: 14 SRLRSVLPKLSDAERRVALWMLKNVDLSIRQSMSAIAQATDVSDTTVLRMCRTAGFEGFT 73 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 D KL LAQ + + + S G++F + L+ LD++ +A+DL Sbjct: 74 DLKLALAQEPREAIE--HSSGEPEASALQAAGRLFRAITQALNDTFGVLDEATFAKALDL 131 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + AK I G+G S VA + R + D LQ M GD+VV IS+ Sbjct: 132 VANAKHIMVGGVGGSGIVAQAFYQRCIRLGLRCDAPIDSQLQIMHAALTGPGDLVVAISY 191 Query: 185 TGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G T + V + Q A+ A + +T ++ + LAR A + + E PM +++AQ Sbjct: 192 SGITSDPVLVLQEAKARGASTLCITGNSSSALARLADVVLVSVSHEQG--SEPMAAQIAQ 249 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +T++D L R + +R+ A+ Sbjct: 250 MTLVDALYAALVARNPEPAQLTEERMVNAILPKSI 284 >UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FC5_PEDPA Length = 280 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 125/278 (44%), Gaps = 6/278 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L + + E S+SE+KVA ++ P I + ++ VS TV R + + Sbjct: 3 NILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKICKS 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G P K+ +A + + VN D ++ K+ + L K+ + +A Sbjct: 63 GLPGLKIQVASEIKVDDS-LYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKKA 121 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 D++ QA I FG+G+S VA D KF R V+ + D L M+ V+++ Sbjct: 122 TDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQTLDTHL--MAVGLAKPNSVLIV 179 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLD--VPEDTDIYMPMV 238 +S +G TK + ++A + +IA+T + +A+ +T+ +T D Sbjct: 180 VSDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATT 239 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S LAQL V+D+L + + + + L + K + E+ Sbjct: 240 SLLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAEN 277 >UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELR8_PEDAC Length = 280 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 130/278 (46%), Gaps = 6/278 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +++QL +K E++VA I+ P I S+ +A + S TV R + + Sbjct: 5 SVVFTLKNQLGDFTKKEKQVARFIIKYPQAVIDSNAKQVADQVGTSAATVIRLAKRVCKN 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G P+ K L + ++ D++E K+ T++ ++ A+ A Sbjct: 65 GLPELKERLKNETMVNDKFF-EEIDPADTLEVMKQKMEYRINHTIEQTNRTVKGGAVRNA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L+ QA + +G+G+S VA D KF R PV + D+ L ++ VVVL Sbjct: 124 AKLVDQADVVYTYGIGASHLVADDLQQKFGRLGKPVAQTQDVHL--LAAEMSKGRGVVVL 181 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTD--IYMPMV 238 IS++G TK ++L AR D V+A+T +PLAR++T+ + + + Sbjct: 182 ISNSGETKETLQLLGAARALDLPVVAITRVLSSPLARQSTVVLAHSDSGEGNQLRSAATT 241 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S +AQL V+D+L F D L + ++ +K + Sbjct: 242 SLMAQLYVVDLLYYSFLKLHFEDNVDQLTKSRKIIKSN 279 >UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAK0_9FIRM Length = 364 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 117/282 (41%), Gaps = 7/282 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ ++Q + E+ + I+ P+ I ++ +A E S T++RFC+ Sbjct: 81 MSFFLELQKNHSS-TPVEKSIINYIINHPNEVIEMTMEDLARETYTSRSTISRFCKKNGY 139 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 GF K+ LA L + + + D+ S I ++ + Sbjct: 140 EGFNSLKMQLAIELNLFLKDEMSSSTSLLFEKGDNASSIIDNITSQDTYSIIETVRTNPV 199 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 I + D + + + F G+ S +A+DA +F R +P Y + Sbjct: 200 EHIEKLADKILNCRHVVFLGVQFSGIIAYDAHLRFSRLGIPCKYFNTECDILTYSYFADP 259 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 DVV++ S++G+T ++E A R + ++T + L + L + ++ +D + Sbjct: 260 QDVVIIFSYSGKTAVILEAADHIRGKGTFLASVTKNYNNELLEISDLHLYINSIDDPENN 319 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + + SR+A L ++D++ ++ F D L + + K+ Sbjct: 320 LSLSSRIAALCLVDMIYAVLVNKKSDNFYDKLMQTNKLYKKH 361 >UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAG5_FUSMR Length = 283 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 124/277 (44%), Gaps = 2/277 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L + L S +E+K+A IL + I +I M+ + S +++RF + + F Sbjct: 7 LFLLDQLLPSFSPAEQKIALFILENTFAVIDMTIEDMSEKIGTSVASISRFTKKIGFENF 66 Query: 64 PDFKLHLAQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 KL +A+ N + ++ NVN++ + + ++ A L+ + + Sbjct: 67 YLLKLGIAKEFVNSSNKTISLNVNKNSNATDIYTNVAKTNSAILEESIEYFNTDKMEEIS 126 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +++ A I F +G+S +A ++ KF R + +D Q + D DV ++ Sbjct: 127 EIILNANHIYLFAMGASGILAKESWYKFIRLGLKCSMIEDFHSQLLQASILDDTDVALIF 186 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+G K+++ L ++ E A I +T+ A TP ++ + + + SR+ Sbjct: 187 SHSGINKDVLTLLEIINETPAYSIGITNYARTPFSQSVDICLFFSENSTPMDKVGFSSRI 246 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 QL +I+ L +L+ G K + +R K+ K+ Sbjct: 247 PQLIIIESLYRILSLKLGKKSKICQERYKQIFKKRSI 283 >UniRef50_Q21ZX8 Transcriptional regulator, RpiR family n=4 Tax=Comamonadaceae RepID=Q21ZX8_RHOFD Length = 310 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 1/278 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I + H S R V +IL P + S +A A S PTV R CR + G Sbjct: 5 VLARIAETMAHAPTSRRSVLAMILQDPQRVLDESFEQLAHRAGSSVPTVMRTCRDLGYPG 64 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 +FKL LAQ LA ++R V D + K+ A + V+ L + + A Sbjct: 65 LREFKLALAQELAVSGSPLHRRVQLHDGAQEVISKVIRGAATAVSGVQAQLGVAEVEAAA 124 Query: 123 DLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 D + +A ++ + +G +S+ +A D + FR + DI LQ +S VV Sbjct: 125 DAIVRASRVDCYSVGVTSSFMASDMQARLFRLGLVSNAYLDIHLQLVSAATLGTQGVVFA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISH G +L+E +A A VIALT T LA+ A + + + VPED +++ + L Sbjct: 185 ISHVGGMPSLIEAVDVAHSQGATVIALTQQETELAKHADIVLGIHVPEDPIMHVGTEAYL 244 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 LTVI+++ R G L V+E L D Sbjct: 245 VHLTVIEIVTVLVAQRLGDLAVKRLGGVREVLSTRGVD 282 >UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016945F6 Length = 248 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 5/242 (2%) Query: 38 AAMALEANVSEPTVNRFCRSMDTRGFPDFKLH----LAQSLANGTPYVNRNVNEDDSVES 93 +A A VSE T+ R RS++ +G+ + KL LAQSL + + ++ D S +S Sbjct: 1 QRLAELAEVSEATIVRLSRSLNLKGYQELKLRIAADLAQSLNSNLAESYQEIHMDASSQS 60 Query: 94 YTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRF 153 I + M ++ L+ ++RA+++L A+KI FG+G+SA +A D K R Sbjct: 61 LVESISHNNMRSIQDTMSVLNIKELDRAIEVLGGARKITLFGIGASAVIAQDFKQKLTRI 120 Query: 154 NVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG- 212 N + D Q N + D V+ IS++G T++++ Q A+E A +I+LT G Sbjct: 121 NRWCEAAYDFDSQATLAANLQEKDAVLGISYSGNTQDILLAMQAAKERGATLISLTKFGH 180 Query: 213 TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 P+A +A + + E + M SR+AQL VID+L G + + L+ ++A Sbjct: 181 NPVAEQAHIRLFTSSLEKSIRSGAMASRIAQLNVIDILYVGIARQNYEENILALENTRKA 240 Query: 273 LK 274 +K Sbjct: 241 VK 242 >UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax=Staphylococcus RepID=A5IV96_STAA9 Length = 290 Score = 204 bits (519), Expect = 3e-51, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 132/287 (45%), Gaps = 4/287 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +I SQ +++K+E+K+A+ IL SP I +A ++S +V RF + + Sbjct: 3 NVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSKKITDG 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D K+++++ + + N + ++S ES K+ L+H + L+ I++ Sbjct: 63 GFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDKTIDQI 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L +++ I +G G+S VA D K R + + + + + D V+L Sbjct: 123 CHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSNDSVIL 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLD-VPEDTDIYMPMVS 239 I++ G + + ++ + +I +TS P+A+ + + +T E+ S Sbjct: 183 ITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHMGATTS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLS 286 AQ+ ID+L + D + + K AL R K L N++ Sbjct: 243 LFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYR--KHLSNIN 287 >UniRef50_Q38V38 Putative transcriptional regulator with a sugarisomerase domain, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38V38_LACSS Length = 276 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 127/281 (45%), Gaps = 6/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M ++E I+ Q LS E+KVA ++ + I +A E VS T++RF R + Sbjct: 1 MAIIEHIKQQYSFLSPQEQKVALAVIQKGASIQRIGIDELAAELQVSNSTISRFVRKIGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + F DFKL ++ V V+ + +I++ + + + ++ +++ Sbjct: 61 QNFVDFKLQFSEGPQPTMTGVQGQVDHESQTSV---EIYQFYQDVITKTQARIKQADLDQ 117 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V + ++++ +GLGSS + + R + + + M+ + D+V+ Sbjct: 118 LVSWIKTSQQLFIYGLGSSGYTGAEFGQRLTRMGIQATVVTESHMMLMTSRIINKTDLVI 177 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S++G T+ + + Q AREN A A+TS +PLA + L + ++ + S Sbjct: 178 GLSNSGNTEEVNQAVQNARENGAKTAAITSGTDSPLAAASDLTLFVEDSIGFASARFVNS 237 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 + A VID+LA L ++ +K+ + + + K Sbjct: 238 QFALTYVIDILAM--LLLEDEQYNWRMKQTVDTIMHHKLKK 276 >UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus RepID=C2KAY2_9LACO Length = 281 Score = 203 bits (517), Expect = 6e-51, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 2/247 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N+ KI +L+K+ + +A+V P ++ ++ + S +V RFCR++ Sbjct: 2 LNLANKISDVYPNLNKTSKLIADVYFKEPRIFLNKNLQELGTITQTSGASVVRFCRNLGF 61 Query: 61 RGFPDFKLHLAQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +GF DF++ AQ + N V+ +N +D S K+ S + + ++D +++ Sbjct: 62 KGFKDFQIACAQEMPNKQDAMVDTIINTNDEPTSVLYKLQLSLGKNIADIGKTIDHKSLD 121 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AVDL+ A++I G G+S A D K R V + + N + D++ Sbjct: 122 AAVDLMRSAQQIYVAGEGASGLAAQDLFYKLIRSGKNVNFVQSSHIALEQVANINKEDIL 181 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 ++ S++G T+ + +A+ A++N+A ++A+T +PL A ITL E Y + Sbjct: 182 IVFSYSGLTQEPLLMAKQAQKNNAKIVAVTRIQDSPLKNMADTVITLPSNEKLLRYGAIN 241 Query: 239 SRLAQLT 245 S A++ Sbjct: 242 SLFAEIF 248 >UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAC9_9ACTN Length = 270 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 126/278 (45%), Gaps = 13/278 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDN-AIHSSIAAMALEANVSEPTVNRFCRSMD 59 M+++ KI+S L +K+E +A IL ++ + ++ E V E T+ RFCR + Sbjct: 1 MSIIGKIESCLPSFTKTETIIARFILDHREDGVEQYLLGDLSRELGVGEATIVRFCRKLG 60 Query: 60 TRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF + K L+ T + G+I + ++++ + I+ Sbjct: 61 LGGFTELKFLLSVENEEHTAARENS-----------GEIKDILISSIKMTDSMVSSKDIS 109 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 VDL A ++ FFG+G S A ++ FRF + Q M C + ++ Sbjct: 110 DVVDLAGAASEVFFFGIGMSGLSASMGESRLFRFGKRTKAITEAHAQNMQASLCDENSLI 169 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 V +S +G T +L+E LA+E+ A V+A+TS + LA A + + Sbjct: 170 VAVSISGETIDLIEAVSLAKESGAKVVAITSYLRSTLAELADYVLLSFGKPNYINAGAFS 229 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + ++QL ++D++ + + LR A+ + KR+ ++ Sbjct: 230 TVVSQLYILDLITSEYALRFSAEAARSKKRIARSIINK 267 >UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=Micrococcineae RepID=A9WVK2_RENSM Length = 346 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 7/284 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 + ++ ++++QL +S + K+A ++ P + SI +A E S TV RFCR + Sbjct: 35 VGVVNRLKAQLPEMSGAMSKIARYLIEKPLAPLELSIKELADETGTSAATVTRFCRLIGY 94 Query: 61 RGFPDFKLHLAQSLANGTP------YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 G+ F++ +A L + R DDS + + +L LD Sbjct: 95 TGYAPFRVGVASDLGRSDARESWKTDIGRAFGPDDSPRDVLSTLMNAHARSLQETAAVLD 154 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + + ++ + +G+G SA +A + N+ +R +P + ++ S + Sbjct: 155 LRLMKNLARRIALSEHVDIYGIGGSAVMAKELQNRLYRIGIPCHHCTEVYAGLTSASLQN 214 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDI 233 + + IS+TGRT+ +++ + A A +AL+ + + LA A IT V E Sbjct: 215 SQCIAIGISNTGRTEETIQMLRQAGLAGATTVALSNNPNSTLAESADFQITTSVHEQFLQ 274 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + ++ QL +D+L + L A+ R Sbjct: 275 PDDLSAKHVQLLAMDLLYLLLAQENFPRATSQLAASAMAVAPHR 318 >UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=Streptomyces RepID=B5GNW3_STRCL Length = 354 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 122/278 (43%), Gaps = 6/278 (2%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 K+++ + +++S ++VAE + P ++ +A SE TV R R + G+ Sbjct: 70 SKVRTLVPSMTRSMQRVAEAVADDPAGCAALTVTGLAERTGTSEATVVRTARLLGYPGYR 129 Query: 65 DFKLHLA----QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 D +L LA + +P V +++ DD + K+ TL +LD +A+ Sbjct: 130 DLRLALAGLAAHQQSGRSPSVTADISVDDPLPDVVAKLARDEQQTLADTAATLDTAALAA 189 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV A++I +G+G+S+ V D K R + D L + + GDV V Sbjct: 190 AVSAAATARRIDIYGVGASSLVGLDLAQKLLRIGLIAHAHTDPHLAVTNAVQLRTGDVAV 249 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVP-EDTDIYMPMV 238 I+H+G T +++E + A E A IA+T A P+ + A +T E M Sbjct: 250 AITHSGSTGDVIEPLRAAFERGATTIAITGRADGPVTQYADHVLTTSTSRESELRPAAMS 309 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 SR QL V+D L G R A L EAL Sbjct: 310 SRTGQLLVVDCLFIGVAQRTYASAAPALAASYEALAHR 347 >UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019054B9 Length = 259 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 123/264 (46%), Gaps = 8/264 (3%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 ++++ KVA +LA P ++ SI +A EA SE +V RFCR + +GF +FKL LA Sbjct: 1 MTRALEKVAAFVLADPQTVLYKSITELAEEAESSEASVIRFCRELGYQGFQNFKLALAHE 60 Query: 74 LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAF 133 LA + ++ E+A L+ LD+ AI R LL A+ I Sbjct: 61 LATLQQPTAS------APGDMVQELVETARTALEETERLLDRDAIQRVSSLLLDARHIEI 114 Query: 134 FGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVE 193 FG+ +SA A K R + D L M+ S D+ +LIS +G T + + Sbjct: 115 FGVAASAITAQYLEYKLARLGIQAHIPRDSHLATMASATASADDLYILISSSGSTIDTLR 174 Query: 194 LAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLAT 252 +A+ A A VIA+T+ +PLA + PE S+++QL ++D LA Sbjct: 175 VAESAHARGAKVIAITNRTKSPLAAICDFKLLASSPETPLTGGAFPSKISQLLIVDALAN 234 Query: 253 GFTLRRGAKFRDNLKRVKEALKES 276 T A+ + +K E++ + Sbjct: 235 TITKLDPARLK-TIKETAESVSDR 257 >UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8A7_MACCJ Length = 285 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 126/286 (44%), Gaps = 5/286 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I + + E+++A+V++ P+ ++ I +A +N SE + RF + + Sbjct: 3 SVLGQITKMYDSFTPVEKRIADVVIEYPEKVVNLPIKEIAHLSNTSEAAIVRFSKRLGLS 62 Query: 62 GFPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G K+ LA+ L V + D E K+F + + L + + I+ Sbjct: 63 GIKVVKVELARELHTIADKKVPTKIELTDDEEVMKEKVFNNTIQALYNTEKVISAKVIDE 122 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A +T AK++ FG+G+S VA D K + + + D++ + GDV+ Sbjct: 123 AAQAITSAKRVMIFGVGNSRVVATDLHVKLMNIDQSAILATDLLSAITLLGHYEAGDVLF 182 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 + S T + K + ++ + A+E +I LT +P R A + + + E+ M Sbjct: 183 VTSETSKNKVITDICKYAKEKGIKIILLTQKFSSPAIRMADIVLAMAKEENEINLGYMTV 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNL 285 R AQLT++DVL N++ + E + + NL Sbjct: 243 RTAQLTIVDVLYLRVCAYLKDTVLSNMQNLNET---RKITHEQENL 285 >UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J381_DEIGD Length = 286 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 114/278 (41%), Gaps = 10/278 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L ++ ++ L + ++A ++A P+ I+ +I +A A V E V R CR + Sbjct: 18 SALARLHAERAQLPPTLERIAAYVVAHPEEVIYQTITELAATAGVVESAVTRLCRRLGFS 77 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF FK+ L+ ++ D + A+ ++ R D +A+ R Sbjct: 78 GFHAFKIALSGDVSQA----QGAAEATDPFSVAARQ----AVQAIEGTRQVADPAALERV 129 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + A ++ G +S A NK R VP D L ++ S VVV Sbjct: 130 AQAIAAATRVDVVGQSNSGLSAQFLANKLARVGVPAFAYTDPHLAAVAAATQSPRGVVVG 189 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 + +G T + V+ +LA A +A+T A +P+ R A + PE + S Sbjct: 190 FTRSGSTIDTVQTLRLAASKGACTVAVTHRASSPVTRYAREVLATSSPESPLAGGALSSL 249 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 ++Q+ +++ L L+ E++ E ++ Sbjct: 250 VSQVLLVEA-LYLVLLPLLPGADAFLRETAESVVEKKY 286 >UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A459_ENTGA Length = 268 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 118/266 (44%), Gaps = 5/266 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ I+S LS ++ K+A+ I+ + D + +A+ +N S V RF + + Sbjct: 1 MSVVTTIESIKNELSTTDLKLADYIVENLDEIPTMTSNVLAVHSNTSPAAVIRFSKKLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFKL L + + N ++ DDS ++ KI + +D LD+ + + Sbjct: 61 SKFSDFKLALTKDIENRIYNEYSDIQNDDSFQTAKNKILRNNKMIIDATDPILDEQTVQQ 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 VD + AK+I +G+G+S A D K+ R V++ D L N + Sbjct: 121 VVDKMFHAKRIYVYGVGTSVLAAEDIRQKWTRIGKTVIFDKDRYLLTQQMKNDGADSLFW 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPED----TDIYM 235 ISH+G+ ++++ L ++A+ + ++ G L ++ I ED Sbjct: 181 GISHSGKNRDVLSLVEIAKSLGMPTLGMSQLGQNQLTKKVDTPIHTARTEDIKNGHYGSG 240 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAK 261 S + Q+ ID+L + R K Sbjct: 241 ATHSIILQIVTIDLLFYFYMRRLSVK 266 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes Rep... 312 9e-84 UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Ta... 308 1e-82 UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales Re... 303 6e-81 UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulat... 299 6e-80 UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=T... 298 2e-79 UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=A... 297 2e-79 UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=T... 297 3e-79 UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=... 296 8e-79 UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Ac... 295 9e-79 UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=D... 295 1e-78 UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=A... 294 2e-78 UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=B... 294 2e-78 UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=B... 291 2e-77 UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus ... 291 2e-77 UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putativ... 290 3e-77 UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=... 289 6e-77 UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax... 286 6e-76 UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n... 285 2e-75 UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia... 284 2e-75 UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulat... 284 3e-75 UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=C... 283 4e-75 UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Ba... 283 6e-75 UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=H... 281 2e-74 UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=P... 280 4e-74 UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=... 280 4e-74 UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=... 280 5e-74 UniRef50_D2AR91 Putative transcriptional regulator, RpiR family ... 280 5e-74 UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Se... 279 5e-74 UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=... 279 6e-74 UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteri... 278 1e-73 UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus ... 278 2e-73 UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostri... 278 2e-73 UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=C... 277 3e-73 UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Ga... 277 3e-73 UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus ... 276 5e-73 UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator ... 276 5e-73 UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=B... 274 2e-72 UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopo... 274 2e-72 UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttle... 274 2e-72 UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=K... 274 3e-72 UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostri... 273 5e-72 UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Sta... 273 6e-72 UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=P... 273 6e-72 UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATC... 273 6e-72 UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseria... 273 7e-72 UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. ... 272 9e-72 UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=B... 272 1e-71 UniRef50_P44540 Uncharacterized HTH-type transcriptional regulat... 272 1e-71 UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostri... 271 3e-71 UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=A... 270 3e-71 UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n... 270 3e-71 UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonel... 269 8e-71 UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulat... 268 1e-70 UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=B... 268 1e-70 UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=G... 268 1e-70 UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostri... 267 3e-70 UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator... 267 3e-70 UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=B... 266 6e-70 UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=... 266 7e-70 UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Er... 266 7e-70 UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=A... 266 8e-70 UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=C... 265 1e-69 UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=P... 265 1e-69 UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteri... 265 1e-69 UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=F... 265 1e-69 UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=C... 265 2e-69 UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=P... 265 2e-69 UniRef50_B9K581 Transcriptional repressor of rpiB expression; tr... 264 2e-69 UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Cl... 263 5e-69 UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n... 263 5e-69 UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=E... 262 7e-69 UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oen... 262 7e-69 UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n... 262 8e-69 UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=B... 262 9e-69 UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=P... 262 1e-68 UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium ... 262 1e-68 UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collins... 261 3e-68 UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=K... 260 3e-68 UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=M... 260 5e-68 UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostri... 259 5e-68 UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus la... 259 6e-68 UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=G... 259 7e-68 UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=S... 259 1e-67 UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID... 258 1e-67 UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=S... 258 1e-67 UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU 258 2e-67 UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=T... 257 2e-67 UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=B... 257 3e-67 UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment)... 256 6e-67 UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=L... 256 7e-67 UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=At... 256 8e-67 UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor... 256 9e-67 UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=O... 255 2e-66 UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus si... 255 2e-66 UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR... 255 2e-66 UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostri... 254 2e-66 UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU 254 2e-66 UniRef50_Q184N2 Putative phosphosugar-binding transcriptional re... 254 3e-66 UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=B... 254 3e-66 UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Provide... 254 3e-66 UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus ... 254 4e-66 UniRef50_P26833 Uncharacterized HTH-type transcriptional regulat... 253 4e-66 UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collins... 253 4e-66 UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax... 253 5e-66 UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejue... 253 5e-66 UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n... 253 6e-66 UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_... 252 1e-65 UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=At... 252 1e-65 UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteracea... 252 1e-65 UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulat... 251 2e-65 UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=... 251 3e-65 UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp... 251 3e-65 UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=F... 251 3e-65 UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecali... 250 4e-65 UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=... 250 4e-65 UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostri... 250 5e-65 UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=G... 249 1e-64 UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=A... 248 1e-64 UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus ... 248 2e-64 UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulat... 248 2e-64 UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rh... 247 3e-64 UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family pr... 247 3e-64 UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=A... 247 3e-64 UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=P... 247 3e-64 UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteoba... 247 4e-64 UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=R... 247 4e-64 UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=B... 246 5e-64 UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=P... 246 7e-64 UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulat... 246 1e-63 UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteoba... 245 2e-63 UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=C... 244 2e-63 UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=A... 244 4e-63 UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enteroco... 244 4e-63 UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus ... 243 4e-63 UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales ... 243 5e-63 UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax... 243 5e-63 UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=B... 243 5e-63 UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio ... 242 7e-63 UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillac... 242 7e-63 UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=L... 242 9e-63 UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hy... 242 9e-63 UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostri... 242 1e-62 UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocace... 242 1e-62 UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=S... 242 1e-62 UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=A... 242 1e-62 UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales ... 242 1e-62 UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=... 241 3e-62 UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=K... 241 3e-62 UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus ... 240 3e-62 UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus pl... 240 3e-62 UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostri... 240 4e-62 UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=B... 240 5e-62 UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=A... 240 5e-62 UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n... 239 6e-62 UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=F... 239 8e-62 UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteri... 239 8e-62 UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=... 239 9e-62 UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=F... 239 9e-62 UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=P... 239 9e-62 UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enteroba... 239 1e-61 UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=F... 238 1e-61 UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, ... 238 1e-61 UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium bu... 238 2e-61 UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n... 238 2e-61 UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=L... 237 2e-61 UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 T... 237 3e-61 UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus ... 237 3e-61 UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulat... 237 3e-61 UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=P... 237 3e-61 UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus... 237 3e-61 UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteur... 237 4e-61 UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, ... 237 4e-61 UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostri... 237 4e-61 UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family... 236 9e-61 UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=A... 236 1e-60 UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=L... 234 2e-60 UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillale... 234 3e-60 UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family ... 234 3e-60 UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n... 234 3e-60 UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=C... 234 3e-60 UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family ... 234 3e-60 UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n... 234 4e-60 UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=St... 233 6e-60 UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus ... 232 8e-60 UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=R... 232 8e-60 UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostri... 232 9e-60 UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=B... 232 9e-60 UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax... 232 1e-59 UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp... 231 2e-59 UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacte... 231 2e-59 UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=S... 231 2e-59 UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=E... 231 2e-59 UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmone... 231 3e-59 UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1... 231 3e-59 UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales ... 231 3e-59 UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacte... 230 3e-59 UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=La... 230 4e-59 UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=P... 230 5e-59 UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=D... 230 5e-59 UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=S... 229 6e-59 UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID... 229 6e-59 UniRef50_P46117 Uncharacterized HTH-type transcriptional regulat... 229 6e-59 UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=La... 229 7e-59 UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 Re... 229 7e-59 UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1... 229 9e-59 UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, ... 228 2e-58 UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdema... 228 2e-58 UniRef50_P37767 Uncharacterized HTH-type transcriptional regulat... 228 2e-58 UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonel... 228 2e-58 UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Ba... 228 2e-58 UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=... 228 2e-58 UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=R... 227 3e-58 UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, ... 226 6e-58 UniRef50_A1HTD9 Transcriptional regulator, RpiR family n=1 Tax=T... 226 8e-58 UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escheri... 226 9e-58 UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=E... 225 1e-57 UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=B... 225 1e-57 UniRef50_A5VV40 Transcriptional regulator, RpiR family n=37 Tax=... 225 2e-57 UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=L... 224 2e-57 UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma p... 224 2e-57 UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=A... 224 2e-57 UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=... 224 2e-57 UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=R... 224 3e-57 UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillu... 224 4e-57 UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostri... 223 6e-57 UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collins... 222 1e-56 UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus pl... 222 1e-56 UniRef50_C3RI81 Sugar isomerase n=1 Tax=Mollicutes bacterium D7 ... 222 1e-56 UniRef50_C5D4L1 Transcriptional regulator, RpiR family n=1 Tax=G... 222 1e-56 UniRef50_Q38V38 Putative transcriptional regulator with a sugari... 221 2e-56 UniRef50_A6BIK8 Putative uncharacterized protein n=9 Tax=Clostri... 221 2e-56 UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pe... 221 2e-56 UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional... 221 2e-56 UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=R... 221 3e-56 UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax... 221 3e-56 UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium ... 221 3e-56 UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnoba... 221 4e-56 UniRef50_C3RM35 Transcriptional regulator n=2 Tax=Bacteria RepID... 220 5e-56 UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacte... 220 5e-56 UniRef50_UPI000196B715 hypothetical protein CATMIT_00151 n=1 Tax... 220 6e-56 UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus ... 220 6e-56 UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macroco... 219 9e-56 UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=E... 219 1e-55 UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=P... 219 1e-55 UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=S... 219 1e-55 UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=D... 219 1e-55 UniRef50_A4E6N7 Putative uncharacterized protein n=1 Tax=Collins... 219 1e-55 UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostri... 219 1e-55 UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acid... 218 1e-55 UniRef50_B7IEI4 Transcriptional regulator, RpiR family n=1 Tax=T... 218 2e-55 Sequences not found previously or not previously below threshold: >UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes RepID=Q8R7I8_THETN Length = 285 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 151/276 (54%), Gaps = 1/276 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ KIQS L+ +E+KVA+ +L + ++ I+ SI +A + E T+ RFCR + Sbjct: 8 NVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLS 67 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +FKL+LA+ +A ++ N++ +D ++ KI + + L S + +A Sbjct: 68 GFQEFKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSELEKA 127 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD + A+KI F+G+G+S A DA KF R + V + D +Q +S ++ +D DV V Sbjct: 128 VDAIINARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLTDKDVAVG 187 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G TK+ VE +LA+E A VIA+T+ +P+ A + + E + S+ Sbjct: 188 ISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRSGALTSK 247 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +AQL ++D+L T ++ K L + +A+ E Sbjct: 248 IAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEK 283 >UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Tax=Gammaproteobacteria RepID=HEXR_ECOLI Length = 289 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT Sbjct: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR Sbjct: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV Sbjct: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR Sbjct: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR 289 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR Sbjct: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR 289 >UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales RepID=C0ZD50_BREBN Length = 288 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 2/278 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++++ LS E+++A+ IL IH SI +A + ++ TV R CR + RG Sbjct: 11 VLTQLRAIYTQLSGKEQQIADYILEHASEIIHFSITELADQCQCADATVFRLCRRLGFRG 70 Query: 63 FPDFKLHLAQSLANGTPYVNRNVN-EDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + FK+ LA + N +++ +N +DD V + KIF + + T+ + ++K + + Sbjct: 71 YQAFKIALASEVTNPKQTIHQEINLDDDDVSAIAEKIFTANIETIRDTQQIINKDELMKI 130 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V L A +I F+G G SA +A DA +KF R +P +Y D Q MS + G VVV Sbjct: 131 VSCLENASRIEFYGSGGSAVIAQDAYHKFMRTGIPCLYHSDAHYQVMSASLLTKGAVVVG 190 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G K+++ Q+A+E A I +TS G +PL R A + + E + SR Sbjct: 191 ISHSGSNKDILAALQVAKEAGAKTIGITSYGKSPLVRLADMCLYTTSRETVFRTEALSSR 250 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 LAQL++ID+L +LRR N++ ++EA+ R Sbjct: 251 LAQLSLIDLLYVAVSLRRQEDTIANIQHIREAISLKRL 288 >UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulator TTE0211 n=3 Tax=Clostridia RepID=Y211_THETN Length = 282 Score = 299 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 142/280 (50%), Gaps = 1/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L I+ + SE K+A+ IL +P S+ +A + SE ++ RFCR++ + Sbjct: 3 DVLAVIREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGLK 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ +A SLA T ++ + +D V + KI +D L+ + +A Sbjct: 63 GFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A KI F+G+ +S VA+DAM KF R N+P D LQ S +N GDV Sbjct: 123 AEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAFG 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G TK +VE Q A+E A I+LT G +PLA+ A + + + E M SR Sbjct: 183 ISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMFRAGAMASR 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +AQLTVID+L ++ L+ E L + + Sbjct: 243 IAQLTVIDILFILVAQKKYNDVVRYLENTSEVLSMRKINN 282 >UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q8T9_9THEO Length = 282 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 143/280 (51%), Gaps = 1/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L I+ SE K+A+ IL + D SI +A + SE ++ RFCR++ + Sbjct: 3 DILTVIKELEATFKPSEAKIAKYILDNADVVTELSINELARACDTSEASIVRFCRTIGLK 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ +A SL+ T ++ + +DD V KI +D+ LD +I +A Sbjct: 63 GFQELKIKIAVSLSKQTKKLDGGITDDDDVSDVIQKIANFNKQAIDNTISLLDVKSIIKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L+ A KI F+G+ +S VA+DAM KF R N+P D LQ S N GDV Sbjct: 123 VDALSNANKIDFYGVAASGTVAYDAMLKFARINIPCTAYQDTHLQLTSAANLKKGDVAFG 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T+ +VE ++A+E A I+LT G PL + A + + + E SR Sbjct: 183 ISYSGCTREIVEALEVAKEAGATTISLTKFGQFPLVKVADINLFVSSEEPLFRSGATASR 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +AQLTVID+L R+ L+ EAL + K Sbjct: 243 IAQLTVIDILFILVAKRKYNDVVKFLENTTEALSIRKIYK 282 >UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=Actinomycetales RepID=C7MQM6_SACVD Length = 333 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 5/283 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L +I+S L L+++E++VA+V+L P + SI +A+ A SE TV RFC+++ Sbjct: 38 SPLVRIRSLLPGLARAEQRVAKVVLEDPSSVARRSITEVAMAAKTSETTVTRFCKAIGVG 97 Query: 62 GFPDFKLHLAQSLANGTPYVNRN----VNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P ++ LA A +R+ + DD + S K+ + ++ LD + Sbjct: 98 GYPQLRIALAADTARTEAKSSRDLGGDITADDDLASVVSKVSFADARAVEETAEQLDIAE 157 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + R +LL +A ++ +G+G+SA VA D K R D + S S+GD Sbjct: 158 LTRVTELLAEATRVDVYGVGASAFVAADLQQKLHRIGRVSFAWSDTHIMLTSAAVLSEGD 217 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V V ISH+G T + VE ++A+E+ A +A+T+ +P+A A +T E T Sbjct: 218 VAVAISHSGATTDTVEALRVAKEHGATTVAITNFPRSPIASVADHVLTTAARETTFRSGA 277 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 SR+AQLTVID L G RR + L+ +EA+ R Sbjct: 278 TASRIAQLTVIDCLFIGVAQRRMDESMAALEATREAVNGHRLG 320 >UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSQ6_9FIRM Length = 287 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 85/276 (30%), Positives = 149/276 (53%), Gaps = 1/276 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+S + L+K+E+KVA+ IL + +H SI +A + +E T+ R C+ + RG+ Sbjct: 12 LPRIRSIYKALTKAEQKVADYILENAAKVVHLSITELAEVSGSAEATIFRLCQKVGYRGY 71 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 FK+ LA L V ++VN DS+ K+F L +D++A+++AV Sbjct: 72 QHFKIALAGDLYTPAELVYKDVNAGDSMGVIARKVFHDINEGLQDTLKIIDEAALDKAVA 131 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 +T+A++I +G SA +A D +F RF +PV D +Q +S GD+ + +S Sbjct: 132 AITKARRIDAYGSAGSAVIAADIEYRFMRFGIPVRAYADPHMQIISAALMQPGDLAIAVS 191 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 HTG ++L++ +A++N A VIA+TS +PL++ A + + E M +RL Sbjct: 192 HTGANRDLLDSVAMAKQNGATVIAITSYMKSPLSKLADITLCGSAKETEYRSEAMAARLV 251 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L ++D L G L R +N++++++A+ R Sbjct: 252 HLAIVDALYVGVMLDRQDCIVENMEKIRKAIAIRRV 287 >UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788119 Length = 278 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 1/273 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +++ + L+ SERKVA IL P I S+A +A+ + S+ + R C++M +G+ Sbjct: 5 LVRLREVYDSLNPSERKVAAFILQEPAEMIQMSVADLAVRSGSSQAAIVRLCKTMGFKGY 64 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D KL +A L +++ +DS+ + + + + ++ +++ + AV Sbjct: 65 QDLKLKVAGDLQEPLATGYQDIRPNDSISAIIQNVSNNNIQSIRDTMKIMEEGMVEEAVL 124 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L Q+K+I FG+G+S + DA KF R N + D +Q S + + D V IS Sbjct: 125 ALDQSKRIFMFGVGASNLIGMDAQQKFLRINKVCISFPDPHVQLTSAVLLTPDDAAVCIS 184 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLA 242 ++G T ++ A +A+E I +T G + L+R + + E+ M SR+ Sbjct: 185 YSGETDEVIRAAAIAKEKGCKTIGITKYGDSTLSRSVDIPLYTSSTENEIRSGAMSSRIT 244 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 QL +ID+L G R L + A+K Sbjct: 245 QLNLIDILYLGVASRNYENSVKYLDESRRAIKR 277 >UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Actinomycetales RepID=A4F6M8_SACEN Length = 308 Score = 295 bits (757), Expect = 9e-79, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 4/285 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L +I+S L L+++E++VA ++LA P + SI +A A SE TV RFC+++ Sbjct: 14 SPLIRIRSLLPGLARAEQRVANIVLADPASVARRSITEVAEAAGTSETTVTRFCKAIGVG 73 Query: 62 GFPDFKLHLAQSLAN---GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+PD ++ LA A + ++ +D V K+ + ++ LD + Sbjct: 74 GYPDLRIALAADTARTSSRDRDLGSDIGPEDDVRKIIEKVSYADAKAVEETADQLDAETL 133 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 VD + +A++I +G+G+SA VA D K R + D S +GDV Sbjct: 134 RSLVDAVARARRIDVYGVGASAFVALDLQQKLHRIGLTCFAWSDTHNALTSAAVLREGDV 193 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 + ISHTG T VE Q A + A ALT+ +P+ A +T V E T M Sbjct: 194 AIGISHTGATTETVEALQEAGKRGATTAALTNFARSPITEVADHVLTTAVRETTYRSGAM 253 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 SR+ QLTVID L G R + + L+ EA+ R + Sbjct: 254 ASRIGQLTVIDCLFIGVAQRHLDQTKAALEATYEAVGAHRLGARP 298 >UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=Dictyoglomus RepID=B8E0M8_DICTD Length = 281 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 143/278 (51%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++LEKI+ Q E SE KVA ILA +H I +A VSE T+ R C+ + R Sbjct: 4 SILEKIKEQKESFRDSEEKVANYILARWQEVLHLPITELAERIGVSEATIVRMCKKLGLR 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + K+ LA V++ V E D +E+ K+F + + ++ + + I RA Sbjct: 64 GFQELKIALATEKIQPIKTVHQAVQEGDDLETILKKVFSANIRAMESTLNVISVKEIERA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D + A+++ +G+G S VA DA +KF + +P V D + MS DVV+ Sbjct: 124 IDAILNARQLQIYGVGGSGPVALDAQHKFMKTGIPTVAYIDSHMMAMSASILEPQDVVIG 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G +K++ E +LA+ A I +T TPL R + +++ E +R Sbjct: 184 ISASGSSKDIFEALELAKNRGATTIGITHYAKTPLDRVLDIKLSVSSEETFYRTESTSAR 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL++ID L G L+R K +NLK +EA+ RF Sbjct: 244 IAQLSIIDTLYIGVALKRLDKMIENLKLTREAIVPKRF 281 >UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C6WFA6_ACTMD Length = 304 Score = 294 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 5/286 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L KI+S L L+++E++VA+V+L +P H SI +A A SE TV RFC+++ Sbjct: 9 SPLVKIRSLLPGLARAEQRVAKVVLDNPATVAHRSITEVAESAGTSETTVTRFCKAIGVG 68 Query: 62 GFPDFKLHLAQSLANGTPY----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P+ ++ LA A + ++ D + GK+ + ++ L+ Sbjct: 69 GYPELRIALAADTARTAARTDRDLGGDIGPGDDLRQVVGKVAFADARAVEETAEQLNVDT 128 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + VD + +A ++ +G G+SA VA D K R +D + S + D Sbjct: 129 LQAVVDAVARAGRVDVYGFGASAFVAFDLQQKLHRIGRTCFAWNDTHIALTSAAVLTGAD 188 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V V ISHTG T VE ++ARE A +ALT+ +P++ A +T E T Sbjct: 189 VAVGISHTGSTTETVEALRVARERGATTVALTNFPRSPISEVADHVLTTAARETTFRSGA 248 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 M SR+AQLTV+D L G L+ +A+ R + Sbjct: 249 MASRIAQLTVVDCLFIGVAQHHVESATSALEATYDAVAGHRLGARP 294 >UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=Burkholderiaceae RepID=Q1LPJ6_RALME Length = 338 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 108/285 (37%), Positives = 163/285 (57%), Gaps = 1/285 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 M ++I + + L SER++A+ + + I ++ +A A VS+PT+ RFC ++ G Sbjct: 1 MRDRILAVYDSLRPSERRLADYVARHGASVIRLTMPELADRAGVSQPTIARFCAALGYDG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F +FKL AQ++ GTP+V+++V DD GK+F+ +ATL VR++L I + Sbjct: 61 FKEFKLQFAQNVGGGTPFVHQDVEADDRPADIAGKVFDRTIATLMSVRNALSADQIEHGI 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A++I F+G G+S VA D +KFFR +P D + MS GDV VL+ Sbjct: 121 RLLAGARRIEFYGCGNSGIVALDIQHKFFRLGIPTTAYSDPHVFSMSAALLRPGDVAVLV 180 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S++GRT +++ A LAR + A V+ALT +G+PLAR A + + DV ED+++Y PM SR+ Sbjct: 181 SNSGRTWDMLTAATLARSSGASVLALTHSGSPLARLADVCVFSDVEEDSEVYTPMTSRIC 240 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF-DKQLLNLS 286 L + DVLA G L R L+R K L+E R L Sbjct: 241 HLVLGDVLAAGVALDRADSVAAGLQRAKAHLRERRIAGADPAPLG 285 >UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=Bacillales RepID=C4L752_EXISA Length = 282 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 157/279 (56%), Gaps = 1/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN +I+ LSK E+++A+ IL P+ IH +I +A + +V+E TV RFC+ + Sbjct: 4 MNGTARIRGAYSTLSKKEQRIADYILKQPEQIIHHTINQVADDLDVAESTVFRFCQRVGF 63 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +G+ K+ LA + ++ ++ E D+ KIF + T++ R L+ ++ + Sbjct: 64 KGYQALKIALASDVVAPLQDIHEDITETDTALEIAEKIFSTNGKTIESTRQILEGVSLEK 123 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+L A++I FFG G SA VA DA +KF R + V + +Q MS + DV V Sbjct: 124 AVELFLGARRIEFFGSGGSAVVALDAYHKFVRSGLQVSAMLESHMQLMSASQLTTADVAV 183 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 +ISH+G +K +++A+L +E +IA+T+ +PL++ A +++ E + S Sbjct: 184 VISHSGASKETLDIAKLLKEKGVPMIAITNYAKSPLSKIADVSLYTVSQETAFRSEALAS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+A+L++ID L T +RRG R +L++++EA+ R Sbjct: 244 RIAELSLIDALFTAVMMRRGEAARTSLQQMREAISMRRI 282 >UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJF9_BREBN Length = 297 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 147/278 (52%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L IQS L +KSE+KVA ++L D+ I+SS+ +A +A V E TV RFCR + Sbjct: 20 NTLLHIQSLLPSFTKSEQKVAHIVLQQTDSVIYSSVIDLAEKAGVGETTVLRFCRKIGFH 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FKL LAQ L N ++ V EDDS++ T K+ + + + R Sbjct: 80 GYQEFKLALAQELVNPVKNLHGEVGEDDSLDIITHKVTATNQQAIGDTSALFQLEQLERC 139 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VDLL +A I F+G+G+SA A DA F R + V ++ LQ M+ GDV + Sbjct: 140 VDLLQKANTIHFYGVGTSAVTAQDAKYTFLRIGLRVDAFNESHLQAMAAATLGPGDVAIG 199 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G TK+ ++ ++A++ A I LT +P+ A + + E + ++ Sbjct: 200 LSVSGSTKDTIDSLKVAKQAGAACICLTHYRRSPITNVADITLLTAAQEGPLQGGSLAAK 259 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL V+DV++T T+R K +R +A+ E ++ Sbjct: 260 IAQLHVLDVISTTITMRNKEKALLYKERTAKAVLERKY 297 >UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ITC5_RHOCS Length = 280 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 110/275 (40%), Positives = 164/275 (59%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I+S L +SE+K+A+++L P +++S+A +A +A+VS+PTV RFCRS+ G Sbjct: 1 MLDRIRSMRPGLRRSEQKIADIVLRQPHAVVNASVAELAHDADVSQPTVVRFCRSIGCSG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + DFKL LAQ LA G V DD V K+ ++ L +R+ L+ A+ AV Sbjct: 61 YQDFKLRLAQDLAAGPARPEDAVRPDDPVAEIAAKLLNRSIGALTRLRNQLNPDALEAAV 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +LT+ +++ +G G+S VA DA NKFFR +PVV D +Q M+ V + + Sbjct: 121 QVLTETRRLDCYGFGASGVVALDAQNKFFRLGLPVVAHTDSHVQAMAAALLGPQGVALAV 180 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S +GRT+ L+ LA A VIA+T+ G+PLA AT+ + +D PED+ Y PM SR+A Sbjct: 181 SRSGRTRELLRSVDLALAGGARVIAITAGGSPLAGRATVPLLVDAPEDSSPYTPMTSRIA 240 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L V+D+L LRRG D L+R AL++ R Sbjct: 241 HLAVVDILQVATALRRGVHTGDPLRRPAAALRDDR 275 >UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=cellular organisms RepID=Q1QSE2_CHRSD Length = 289 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 176/280 (62%), Gaps = 2/280 (0%) Query: 1 MN--MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM 58 M+ + ++++ ++EH +SE+KVA +L P++ IH I +A EA VSEPTV RFCR++ Sbjct: 1 MSSALFDEMRRRMEHFRRSEQKVARFVLRHPEDVIHMRIVDLATEAKVSEPTVVRFCRAL 60 Query: 59 DTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF DFKL LAQ LA G+ + ++N+ DSV + IF+S + TL VR LD +A+ Sbjct: 61 GCNGFQDFKLKLAQMLATGSQFAQFSMNDSDSVAEFAHNIFDSTVGTLLSVRDRLDHAAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV L A ++ F+G G+S AVA DA +KFFR + D +Q MS + + DV Sbjct: 121 GKAVTALAMANRVEFYGFGASGAVAFDAQHKFFRLQISTAAYTDPHMQNMSAVTLTPRDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 VV IS TGRT+ LV +LARE A VI L + +PLA E TL + +DV EDT+IY PM Sbjct: 181 VVAISQTGRTRALVASVRLARETGATVIGLCPSDSPLASEVTLPLYIDVHEDTEIYTPMS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+A L +IDVLA G RG K + LK VK++L RF Sbjct: 241 SRVAHLVIIDVLAVGVAKTRGPKLAEQLKSVKKSLVPLRF 280 >UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C77F Length = 277 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 3/276 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + +I+ L+++E+++A+ I+ P+ + S + + + S V RF + + Sbjct: 1 MSCITRIKEA--SLTETEKEIAQYIIEHPEQVLDDSAMKLGEKTHSSSAAVVRFAKKLGY 58 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GFP K+ LA+ L P V+ ++ D+ + + K+ S + T+D H L S + Sbjct: 59 SGFPQLKIELAKDLVGSIPEVDNLLHPDEDMATLMNKVHHSQIVTIDKTYHLLSASTLED 118 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V L QAK + FG+G SA V D ++K R + D+ LQ S N ++ D+ + Sbjct: 119 VVKALEQAKHVYLFGVGGSAIVCDDFIHKLMRIGKYACFYPDVHLQMTSVPNMTEEDLAI 178 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S++G TK +V A+ A+E + +A+T SA L + +T+ E + M S Sbjct: 179 FVSYSGETKGIVTAAKWAKEMNIPSVAITQSAYNKLGKLVDHVLTIPSQEQSLRIGAMSS 238 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 R + L V+D+L G R K+ + + ++E Sbjct: 239 RYSSLIVVDLLYYGLVKRNKEKYAQKIINTRRIIQE 274 >UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n=51 Tax=Bacillus RepID=A8FJ30_BACP2 Length = 285 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 143/277 (51%), Gaps = 2/277 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 +EKI++ L + +AE I + P + IH SI +A + SE T+ R C+ + GF Sbjct: 9 IEKIRAASRGLPPKLKAIAEHITSEPRDIIHLSIVELAKKTASSEATIFRLCKRLGFEGF 68 Query: 64 PDFKLHLAQSL-ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 D K+ +AQ + YV+ ++ DD + + K+F++ ++ L L+ + +A+ Sbjct: 69 QDLKIAIAQEIDQTKPNYVDEEMSLDDDMAVFMQKVFQTNISALKDSFQLLNPEDVEKAI 128 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 ++ +AK++ F+G G S +A DA +KF R + + D Q MS V+ I Sbjct: 129 QIIHEAKRLEFYGSGGSGLIATDAFHKFMRTGINCIVHTDSHFQAMSAGLLDQHSTVIGI 188 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+GR K+L++ + A+ A I +TS +PL++ A + + E M +RL Sbjct: 189 SHSGRNKDLLDAMKTAKSKGAKTIGITSYQRSPLSQLADVTLYTATQETAFRTEAMSARL 248 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 AQLTVIDVL R + NLK+++E + + R Sbjct: 249 AQLTVIDVLYFALAHLRQQETITNLKQMRETISQKRV 285 >UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSK7_9FIRM Length = 282 Score = 284 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 152/278 (54%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + E I+ ++ +L+ +ERK+A +L + D ++S+I +A A VS+ +V RFCRS+ + Sbjct: 5 SCKEIIRGRMNYLTNTERKIANYVLENYDQVLNSNITELAENAKVSDASVVRFCRSLGYK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DFK++ A+ + ++N + E DS + KIF ++ L+ SL+ + +A Sbjct: 65 GYQDFKINAAKDVLPREKHLNPILEESDSPDMICHKIFNLEISVLERTLASLNMREVEKA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + K++ FFG G S V DA++KF + V V +D LQ M+ +GDVV+ Sbjct: 125 AQFIFHGKRVLFFGSGGSLLVGQDALHKFMKIGVQVYVHEDRDLQLMASSLAGEGDVVIG 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G +++ + A+EN A IAL S G TPL++ A + I E + +R Sbjct: 185 ISHSGSNYSVLRCLKNAKENGAQTIALVSRGKTPLSKIADVVIDTASEETIFQSESVSTR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL +ID L + + +++ ++A E++F Sbjct: 245 IAQLAIIDSLVSIVAFMNYDESYRAIQKTRKATSENKF 282 >UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulator CA_C0191 n=5 Tax=Clostridia RepID=Y191_CLOAB Length = 283 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 145/278 (52%), Gaps = 3/278 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +I+ + L+ SERK+AE IL + SI +A ++ S+ V R C+ ++ +G+ Sbjct: 5 LIRIKEIINDLNPSERKIAEYILNNSKAISDLSIKELAGKSGSSKSAVVRLCKILNYKGY 64 Query: 64 PDFKLHLAQSLANGTPYVNR--NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 +F++ +A+ N NR ++N D + + I + ++D+ L + + +A Sbjct: 65 KEFRIAIAKDTVNVDKEENRYTDINPKDDLHTIIKNISYNNKKSIDNTMEVLSEELVEKA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + +++A ++ F+G+G+S VA DA KF R N V + D LQ N GDV V Sbjct: 125 SEAISKAYRVDFYGIGASYIVAMDAFQKFMRINKNVRATPDTHLQVEFASNLKKGDVAVA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS+TG TK+ E + A+E A I++T G+ ++ + + + PE T M SR Sbjct: 185 ISYTGETKDTFESIKAAKEAGATTISVTKFGSNSISDLCDINLFVLSPEITFRSGAMSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL VID+L T R + ++ L+ +++ + R Sbjct: 245 IAQLNVIDILFTSVAGRMFEEVKEFLENTRKSTRVKRI 282 >UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TJ91_CLOBB Length = 285 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 1/276 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 LE+I + L +E+KVA+ +L +P N IH SI +A + SE TV R C + +G+ Sbjct: 10 LERITNIYSELKGAEKKVAQYVLENPKNIIHFSITELAEVSKASEATVFRLCSKLGYKGY 69 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K++LA S+ + V E+D KI S + +++ +++A+ Sbjct: 70 QDLKINLAGSVIEPIDNIYEEVKENDDTYIIMRKIMSSNINSIESTLKINKTEDLDKAIA 129 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 ++ AKKI FFG+G S +A+DA +KF R + V S D Q M + GD ++ S Sbjct: 130 IILNAKKIMFFGMGGSWTIANDAYHKFIRTGIDCVASCDSHWQVMFSSMANSGDAIIAFS 189 Query: 184 HTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 ++G K LVE LA++ +IA+T + +PLA+ + L + E M SRL Sbjct: 190 NSGSNKELVENINLAKKRGIKIIAITGNEKSPLAKISDLHLIAYGNESMFRSEAMESRLT 249 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L ++D L G ++R K NL+R++ + RF Sbjct: 250 SLMIVDWLYVGVAIKRKDKTLGNLERIRNGIASKRF 285 >UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Bacillales RepID=C6J1X3_9BACL Length = 289 Score = 283 bits (724), Expect = 6e-75, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 139/277 (50%), Gaps = 2/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L + S LE LS ERK+ E IL SP IH I +A +S TV RFC++ +G Sbjct: 4 ILHAVSSHLETLSPQERKLGEYILESPATVIHQGITELANACGISPSTVTRFCKTFHFKG 63 Query: 63 FPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FPDFK+ LA LA +++ + ++ + + +A++ LD + ++RA Sbjct: 64 FPDFKMKLASELAHKPAENHYQDIIAGNDLQKIVEAMEANHLASITDTTRLLDMNQLSRA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ L +AK+I +G+ +S+ VA D K R D +Q S + +GDV + Sbjct: 124 VEALCRAKRIDLYGVATSSIVAQDFYQKLVRIGKNCTAFADSHMQITSASSLGEGDVALA 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T ++ + A+++ A ++LT + LA A +A+ E+ M SR Sbjct: 184 ISYSGETPETIDALRCAKDSGATTLSLTQYSSNSLASLADIALFSSSLEEGMRRGDMASR 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL VID+L TG F L+ + ++ R Sbjct: 244 IAQLHVIDILFTGMVSLEFQDFIPKLESSYQNVQIYR 280 >UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNZ1_HIRBI Length = 297 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +I+ + + L S +A+ +L + + S+ +A SE +V CR + Sbjct: 20 NVISRIRIRKDSLGPSTSTIADYVLGHANAVVGMSVTELAEATGTSEGSVINLCRQLGLS 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF KL LAQ + +++ ++ D + K+F + L LD AI+ A Sbjct: 80 GFQQLKLSLAQEVVRPVQFIHEDLQPSDDTSTVCQKMFHAGSEALRETLSILDPDAISMA 139 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD++ A ++ +G+GSSA +A DA + R + D +Q +S V+ Sbjct: 140 VDVIRSADRVEIYGIGSSAPIAEDAQYRMLRIGLDAKVVVDSHIQAISASRTGPNVAVLT 199 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G T + +LAR+ A I +T+ +PL A + + E M SR Sbjct: 200 ISHSGSTHETLAATRLARDAGAKTIIITNFASSPLQAYADVKLYTMARETKFRSEAMTSR 259 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL ++DVL L + L++ E L RF Sbjct: 260 IAQLCILDVLIAALALDDYERATTVLRQTSEVLSIKRF 297 >UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7K6_PAESJ Length = 284 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 139/278 (50%), Gaps = 3/278 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I S + +E+K A+ IL D ++ SI +A V E ++ RFC+++ + Sbjct: 5 SITSTIHSHYNRFTATEKKTADYILEHADAVVYMSITDLAEGCGVGEASIFRFCKALGFK 64 Query: 62 GFPDFKLHLAQSLA--NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+ FK+ LA S++ N P ++ V D++E K +S + L+ + +IN Sbjct: 65 GYQQFKIALAHSISADNEIPQLSGQVKIQDTLEDAVSKTLQSNINALNETFKLIQLDSIN 124 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 RA+DLL ++ + F+G+GSS A +A NKF R S D Q MS + DV Sbjct: 125 RAIDLLIRSDRFIFYGVGSSLMTAMEANNKFMRITNKTGCSVDSHQQAMSAALMGERDVA 184 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 ++IS++G TK+ +E+A+ A+E A +I +T +PL + + + E + Sbjct: 185 IIISYSGSTKDSIEVAKKAKERGAAIIVITRFVKSPLTSYSDITLLCGANEGPLQGGSLS 244 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +++AQL ++DVL + R N + A+ Sbjct: 245 AKIAQLYLLDVLYVEYFKRTYEASIVNKENTSAAVAVK 282 >UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=Burkholderiaceae RepID=Q3JNN8_BURP1 Length = 339 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 110/280 (39%), Positives = 168/280 (60%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ML +I++ L SERK+A+ +LA+P + S+ +A A S+PT+ RFC+++ Sbjct: 7 TMLPRIETIRAQLRPSERKLADFVLAAPREVLDLSMTELAARAGASQPTIARFCQALGCS 66 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +FK+ LAQS+A G V R+V D+ GK+F+ + L VR+SL +++ A Sbjct: 67 GFREFKIRLAQSVAPGVASVYRDVEPDERAPGIIGKVFDRTIGALIEVRNSLSATSVAEA 126 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++LLT+A +I F+G G S A D +KFFR VP V D MS DVVV Sbjct: 127 IELLTRASRIEFYGAGGSGIAAQDIQHKFFRLGVPSVAYSDPHTFSMSAALLGANDVVVA 186 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TGRT+++V+ A+ A A VI++T + +PLA+ +T+++ +V E+TD++ PM SR+ Sbjct: 187 ISNTGRTRDIVDAARAALACGAKVISITHSHSPLAQLSTVSLASNVAEETDVFSPMTSRM 246 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 + L + D+LA G LRRG + D L R KEA+ R Sbjct: 247 SHLAIGDILAVGVALRRGPELVDRLGRAKEAITRRRIGAD 286 >UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=Clostridium RepID=A7GD47_CLOBL Length = 281 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L +I+ + ++KSE+K+AE I SP + I S +A++ + S ++ RF + + Sbjct: 1 MGVLLRIRENFDSMTKSEKKIAEYIFKSPKDIISDSAQEIAIKTSTSPASIIRFTKKVGY 60 Query: 61 RGFPDFKLHL-AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +FK L A+ + + +N +DS++S K+ + T++ + +D + Sbjct: 61 NSLNEFKFALVAEEYTKESTEFDYIINYNDSIDSIINKLGNKVIDTINDTKELVDDEKLL 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV + A+ I +G+G+SA VA D K R N V++ D LQ ++ ++ DV Sbjct: 121 EAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDVA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 V IS++G T+ + + A++N A IA+T G + L+ A + + + E + Sbjct: 181 VAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR +QL V D L G K NL + ++ + Sbjct: 241 SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLK 279 >UniRef50_D2AR91 Putative transcriptional regulator, RpiR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AR91_STRRD Length = 299 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 127/287 (44%), Gaps = 3/287 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N++ +++ L L+ + + +A +IL P S+I + + SE T+ R R++ Sbjct: 10 VNLVATVRAVLPSLTPAAQAIARLILDDPGMVARSTITEFSAVSGTSEATIVRTARALGF 69 Query: 61 RGFPDFKLHLAQSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + LA ++A P V ++ DD + K+ + L L+ + Sbjct: 70 AGYSQLRFALAAAVAREEPERLVPGDLGPDDPLTDVIAKVTRAESEALADTAAQLNPDRL 129 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 V+ +T A+++ +G+G+S VA D K R D L S +GDV Sbjct: 130 GAVVEAMTAARRVDVYGVGASGLVAADMAQKLMRIGRSSHAFTDAHLALTSAALLGEGDV 189 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 V +S TG T +++ ++AR+ A +A+T + + LA A + E + Sbjct: 190 TVGVSCTGETPDVIAPMRVARKAGATTVAITNNPRSSLAELAEHVLVSAGRETAFRPGAL 249 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 SR++QL ++D + G R L+ + AL E D + N Sbjct: 250 ASRISQLLIVDCIFVGIAQRTFETSDAALRATRGALDEFMADTRRRN 296 >UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1J5_9FIRM Length = 282 Score = 279 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 1/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 L+ I+ +L L+KSE+K+AE IL P+ + ++I +A S+ ++ RFC+ +G Sbjct: 6 FLQLIEDKLGTLTKSEKKIAEYILEHPNRVVDATITELAERIGTSDASIVRFCKLFGCKG 65 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + +FK+ LA+ + +N + + D+ + KIF + +ATL L+ + Sbjct: 66 YQNFKIRLAREVVPHYKQLNVALEQHDTALTICQKIFNTEIATLHETLEMLNVEHLQTMA 125 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 + +A I FG G S+ VA D +KF + + D +Q MS GDV + I Sbjct: 126 QRIREADYIEVFGSGGSSVVAQDIRHKFLKVGIRCTVLLDADIQAMSASLLKKGDVAIGI 185 Query: 183 SHTGRTKNLVELAQLARENDAMVIAL-TSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG TK++ ++AR+N A VI L T A +P+ R A L I + E +R+ Sbjct: 186 SHTGSTKSVFHCLKMARKNGAYVILLTTQAKSPIGRIADLVIPVGSKETLFKSESTSARI 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 A+L V+D + K+ + + ++A E++F Sbjct: 246 AELVVMDAVLALAVSDDYKKYNVKITKTRDATSENKF 282 >UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=cellular organisms RepID=A9BXM8_DELAS Length = 323 Score = 279 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 110/281 (39%), Positives = 168/281 (59%), Gaps = 4/281 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I + L L+ +E++VA ++LA P + +A A+VS+PTV RFCRSM G Sbjct: 43 MLDRITASLPSLAPAEQRVARLVLADPRAFARQPVRELAERAHVSKPTVVRFCRSMGYDG 102 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 DFKL LA S++ G P+++R+V+ DD K+ ++A+A R++ +AI +A Sbjct: 103 LADFKLKLAGSVSEGVPFIHRSVDTDDKTSDVMVKVVDNAVAAFLQYRNAASTTAIEQAA 162 Query: 123 DLLTQA----KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + ++I F+G G+S VA DA +KFFR V + + D +Q MS GD Sbjct: 163 QAIASTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGVTSLATSDGHMQVMSATLLGPGDC 222 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 V+IS++GRT++L++ A +AR+N A IA+T++G+PLA + + D PE D Y PMV Sbjct: 223 AVIISNSGRTRDLMDAADIARKNGATTIAITASGSPLASACHIHLAADHPEGYDRYSPMV 282 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 SRL L VIDVLAT LR G + L+++K L+ R+ Sbjct: 283 SRLLHLLVIDVLATCVALRIGPALQPALEQMKNNLRAKRYT 323 >UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A8S9N1_9FIRM Length = 321 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 132/273 (48%), Gaps = 4/273 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++ LS +ER++A+ IL +PD +I +A + S +V R CR + + Sbjct: 36 NVLLRLREVQPSLSSTERQIAQFILENPDETTTLTIRDLARRSFSSPSSVVRICRVIGFQ 95 Query: 62 GFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + + L LA + +++ DS++ K+ + +L + L + Sbjct: 96 GYKELRHALTLELATLGENGSHREKDITPQDSLQEIVDKVTHKNIQSLLDTQRLLLLDEL 155 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + V+L+ A+ + FG+GSS VA D KF R + P V ++D Q + N + DV Sbjct: 156 EQCVELIANARTVLLFGIGSSLCVAKDTYLKFLRLDKPCVVNEDSHSQLLQARNATAQDV 215 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 ++ S++G+T +++ + + A VIA+T + +A+ A + + E M Sbjct: 216 GIVFSYSGQTMEMIQCIKEMKAGGAPVIAVTRYYPSEVAQLADHVLYVAANESLFRNGAM 275 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 SRL+QL V+D+L T + R L + Sbjct: 276 SSRLSQLNVVDILYTAYASRNHEDTMRRLTKTH 308 >UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J4B4_9BACL Length = 288 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 4/280 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L KI+ E+L+ ER VAE ILA+ ++ H SI ++A + S+ +V RFC++M Sbjct: 7 NILIKIRDMKENLTPVERMVAEYILANTEDIPHLSIKSLAKLSKTSDASVLRFCKTMGYS 66 Query: 62 GFPDFKLHLAQSLANGT---PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ F + ++ +L + ++ D +++ I + M +++ LD+ + Sbjct: 67 GYRSFIVSISAALGSMDDERKDQYTDIQPGDDLDTIIANISRNNMKSIEDTLSVLDRGEV 126 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RAV L + +I FFG+G+S V D KF R N D Q + GDV Sbjct: 127 ARAVKALRASNRIVFFGIGASGLVCQDGEQKFSRINKMCHSYTDGHSQLTAATLLGKGDV 186 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 + +S++G T ++E ++A++N+A +A+T + LA +A + + + PE T M Sbjct: 187 AIFVSNSGNTLEIIETLEIAKKNNATTVAITKYNKSELADKADILLGISTPEITMRSGAM 246 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR+A LT+ID+L G + L + L Sbjct: 247 GSRIAMLTIIDMLFAGVASAEYQNVKKYLTKTHSILAAKH 286 >UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI47_9CLOT Length = 285 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 147/275 (53%), Gaps = 2/275 (0%) Query: 6 KIQSQLEHLSK-SERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 ++QS L ++K +E K+ E I + IH S+A A VSE + R+ + + +G+ Sbjct: 11 RVQSILPSINKKNEMKIYEFIEINRKEIIHMSVADAAEACGVSEAAIVRYAQKLGYKGYQ 70 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 K+ +AQ + + +++ D++ + KIF+S + +L L + I+ AV+L Sbjct: 71 AMKISIAQDVIEPGQQIYGQLSKGDTIPTIVDKIFDSNIQSLRDTSDVLSRENIDEAVNL 130 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + +++ FFG+G S VA D +KF + + D LQ M+ + DV+V +SH Sbjct: 131 ILGCRRLLFFGVGGSGCVAMDGQHKFLKIGYMAMAFTDSNLQAMAASVLTSRDVLVAVSH 190 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G +K+++ +A+++ A IA+T+ G +P+ +A + + E + SR+A+ Sbjct: 191 SGASKDILMAMDIAKQSGAKTIAITNYGKSPIVEKADVVLYTSSNETAFNSDALSSRIAE 250 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 LT+ID+L G + +R + N+ + ++AL ++ Sbjct: 251 LTIIDMLYIGVSYKRYDESYANILKTRKALDSTKI 285 >UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIQ0_CLOPH Length = 284 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 143/278 (51%), Gaps = 4/278 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + +I+S +KSE+ VA+ + +P+ +++SI +A V + TV RFC+++ G Sbjct: 5 IFARIESSYSKFTKSEKIVADFVFENPEKVLYTSITDLAEICGVGDTTVFRFCKALKLNG 64 Query: 63 FPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 + +FK+ LAQ +A +N +V++DD +++ K +A L L+ A+ Sbjct: 65 YQEFKMFLAQDIAVRTGSDYTINGSVSQDDDIQTICKKALAVDIAALTETFEGLNFEAVT 124 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + VD+++ A K+ FFG+GSS +A +A KF R V + D +Q MS S D+ Sbjct: 125 KVVDMISNANKVQFFGMGSSGVIALEAKMKFMRILPNVEHIADCHMQFMSAALLSSRDLA 184 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 ++ S++G TK+ +E+A LA+ N V+++T + LA + + I E Sbjct: 185 IIFSYSGSTKDSIEIANLAKSNGCKVVSITRYVNSHLANISDVVIPCGSNEGPLDGGASS 244 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + + Q ++D+L + + + + N + E++ Sbjct: 245 TSMVQFYILDILYLLYFTKHYHQSKLNKAKTTESISSK 282 >UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Gammaproteobacteria RepID=B8KWX3_9GAMM Length = 337 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 146/281 (51%), Positives = 195/281 (69%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+LE I L L+KSE KVA+ IL+ PD A SIA++A A VSEP+VNRFC+ Sbjct: 52 NLLEDINQSLPGLNKSEVKVAQAILSDPDAATRMSIASLASRAGVSEPSVNRFCKRFGAS 111 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GFPDFKL LA S+ +G Y++R V D +++Y GK+F++A++ L + L I RA Sbjct: 112 GFPDFKLRLATSMVSGVRYISRAVEFSDDIDTYPGKLFDNAISALVAAKEQLPTGDIARA 171 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L QA++I FFGLG+SAAV DA +KFFRFNVPV D ++QRM S GDV + Sbjct: 172 VDFLAQARRIHFFGLGTSAAVTKDAEHKFFRFNVPVTNHQDPLMQRMLAAAGSVGDVFFI 231 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISHTGRT+ LVE+A+LAR+ +A V++LT+ +PLA+E+ AITL + E+T+ Y+PM SRL Sbjct: 232 ISHTGRTRALVEVAELARQTEATVVSLTAPQSPLAQESDCAITLTIGENTEEYLPMTSRL 291 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 QL VIDVLATG TLRRG +F +L R+K++LK +R Sbjct: 292 VQLAVIDVLATGVTLRRGERFLPHLARIKDSLKATRLKPGY 332 >UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7S3_BREBN Length = 288 Score = 276 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 147/273 (53%), Gaps = 2/273 (0%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 +Q+ L+ L SERKVA+ ILA P++ + S+ +A + VSE T+ R RS++ +G+ + Sbjct: 12 LQAILDQLKPSERKVADYILAHPEDVVKLSVQKLAEYSGVSEATIIRLARSLNMKGYQEL 71 Query: 67 KLHLAQSLANGTPY-VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 KL +A L T + + + SVES + + + ++ L + +AVD+L Sbjct: 72 KLRVAGDLTKQTARGSYQEIMMEGSVESIMQAVSWNNIQSIQDTLSVLSNEEVKKAVDVL 131 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 + A+KI +G+G+SA +A D KF R N+ D Q S + ++ DVV+ IS++ Sbjct: 132 SVARKIDVYGVGASAVIADDIRQKFSRINLWCEAYSDFHAQLTSAVTLTEKDVVIGISYS 191 Query: 186 GRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G+T+++++ A++ A +I LT G +P+A A + + E + M SR+AQL Sbjct: 192 GQTEDIIQSLTEAKQQGATIITLTKFGPSPVAELANIRLFTSSVEKSIRSGAMASRIAQL 251 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 VID+L R + L++ + A+ ++ Sbjct: 252 NVIDILFITMISRMQERVIPLLEKSRLAVSRTK 284 >UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator n=24 Tax=Neisseria RepID=A9M040_NEIM0 Length = 282 Score = 276 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 117/278 (42%), Positives = 170/278 (61%), Gaps = 1/278 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML KI L +LS +ERKVAE LA P +H+++A +A A+VS+PTV RFCRS+ +G Sbjct: 1 MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKG 60 Query: 63 FPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 P+FKL L+ S+ G PYV+ +N DD + S K+ +A A+L R L +S + A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A+++ F+G+G+S VA DA +KFFRF + V D Q M+ SD DV+V Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG + L++ +A+EN A VIALT +PLA+ A +++ E+ ++Y PMVSRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLADCVLSVATQENAELYTPMVSRL 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 QL VID+LA G LR G L++ K+++ D Sbjct: 241 LQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKHID 278 >UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=Bacteria RepID=A6LRF3_CLOB8 Length = 294 Score = 274 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 143/285 (50%), Gaps = 9/285 (3%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 KI++ L SE+KVA+ +L + + ++A ++ + VSEPT+ RF +S+ G+ + Sbjct: 10 KIKNMYNLLRSSEKKVADYVLLNGHSVSTMTLAELSRQVGVSEPTIIRFVKSIGCSGYSE 69 Query: 66 FKLHLAQSLANGTPYVNRN--------VNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 FK+ L + + + ++ D+ +E K+ + L+ +D + Sbjct: 70 FKMALMKEWGRESVDKQYDSKLLVELHIDRDEKIEDVPVKMIGLTIKALEDTLKIIDINK 129 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +A++++ + I +G+G+S +VA D NKF R + D +Q++ + + D Sbjct: 130 YKKAIEMIRSSNIIDVYGVGNSGSVASDIRNKFLRIGLECRAYSDSNIQQICASHLTSND 189 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMP 236 + + +SH+G T + V ++A+E+ A IALT+ P ++ A + E T Sbjct: 190 LAIGVSHSGSTIDTVNALKIAKESGARTIALTNFKAPAISEYADITFFTGGEETTFYSET 249 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 MVSR++QL ++D+L G L + L+++ LKE + K+ Sbjct: 250 MVSRISQLAIVDMLYMGILLDDYDLYTKRLEKINLLLKEKNYTKK 294 >UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8M2_9ACTN Length = 291 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 142/273 (52%), Gaps = 4/273 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +++ + L+ +E+ VA +L P + S+ A+A + VS V R C+S+ Sbjct: 3 NIIIRLRENIGFLNPAEKAVARYVLQCPHESNRLSVKALAARSFVSPAAVVRMCKSIGFE 62 Query: 62 GFPDFKLHLAQSLANGT---PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF +FK L + LA P +++ ++D++ES KI + +L +D I Sbjct: 63 GFKEFKTELTRELATEKLILPLDTKDIKQNDTLESIIKKITLKNIHSLYDALRLIDPETI 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV+LL +I FGLG+S A DA KF R N + +DD LQ ++ N + DV Sbjct: 123 EKAVELLQACDRILLFGLGASLIAAKDANLKFLRVNKTCLINDDWHLQLITARNSTSQDV 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPM 237 ++IS++G+T + A++ + N+ +IA+T +P+++ A + + E M Sbjct: 183 GIVISYSGQTAETLTCAEILKHNNTPIIAITRCIESPISKLADVLLYTTSNESLFRSAAM 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 SR++QL +ID+L T F + K L + + Sbjct: 243 SSRISQLNIIDILYTAFAVSDYEKNFTYLSKTR 275 >UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9W4_9FIRM Length = 280 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 149/276 (53%), Gaps = 3/276 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +Q L+++E+K+A+ + + + SI +A E +V++ +V+RFCR++ + Sbjct: 5 NVLLSMQLSYNQLTRTEKKIADYVQKNAQKVLFMSITELAEECHVADASVHRFCRTIGAK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FK+ L+ ++ + + ++ +S + ++ LDK +++A Sbjct: 65 GYQEFKMWLSINMGHEKGEEESEEEDGKEP--IFQQVLKSHLEAINETNQLLDKEKVDQA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V +LT+A++I FFG+G S A +A NKF V+ + D LQ M+ ++ D++ + Sbjct: 123 VRMLTEARQIMFFGVGDSKTAAIEANNKFLHVTPKVMCAGDTHLQAMAASMMTEEDLLFV 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S++G TK+ VE+AQ+A+E A VI++T +PL + + E M ++ Sbjct: 183 VSYSGSTKDTVEVAQIAKEAGAKVISITRFLKSPLTEFSDCVLICGSKEGPLEGGSMGAK 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 L+QL +ID+L + G K R+N ++ A+ Sbjct: 243 LSQLHIIDILYQCYFKANGKKARENRQKTANAVVNK 278 >UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIM2_KOSOT Length = 283 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 136/276 (49%), Gaps = 3/276 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I++ + +K+E+K+A ++ +P ++ S+ ++ VSE ++ RFC+ + Sbjct: 6 NVLLTIETLKDSFTKTEKKIATFVVKNPQKVVYMSLTEVSDILKVSEGSIVRFCQKLGYT 65 Query: 62 GFPDFKLHLA-QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF FK+ LA + N D + S + + + + + + + + Sbjct: 66 GFHPFKIALAVSENQESFSSSEFDFNSRD-LSSLKNYVAQRHIDVIKNTSEFISEEILEA 124 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ + A+ I G+G+S AHDA KF R + S D +Q M +GDV++ Sbjct: 125 CVEKILTARTILISGVGASGNTAHDAFYKFMRIGLNCKTSHDAHIQAMIASELREGDVLL 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T +V++A +AR+ A VIA+T +PLAR A + E + S Sbjct: 185 AISQSGSTLEIVDIADIARKGGATVIAITGYARSPLARFAHHVLLTPTRESPFESGALRS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 ++AQL V+++L T R K R ++R +++ + Sbjct: 245 KIAQLYVLELLFTAVFHRMEEKGRKFIERTADSVAK 280 >UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWE9_9CLOT Length = 301 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 155/278 (55%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + ++++ + LSK E + AE + A + I+SSI +A A SE TV R C + R Sbjct: 24 TLYDRVEEKRGSLSKKELETAEYMAAHQEQLIYSSITDLAERAGSSEATVTRVCGKLGYR 83 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K+ +A+ L ++ N+ D E KIF SA+ TL + S++ A+ + Sbjct: 84 GFQALKVGVARELTTPQEKIHENLEADSPAEVIIEKIFSSAIETLSMTQKSINVKAVAAS 143 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D L +A++I G G+SA++A DA +KF R ++ D +Q ++ + +D DV++ Sbjct: 144 IDALCRARRIIIIGNGNSASIAADAQHKFLRLDLNAHAYTDDHMQMIAVSSMTDQDVLLA 203 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G ++N+VE A A+E A VI+LT+ G +P+++ A + + E + SR Sbjct: 204 ISYSGSSRNVVEAAHQAKEQGATVISLTNEGSSPVSKLADICLNTYSQETRYRTYAISSR 263 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +A+LT+ID + TG LR G K N + ++ AL ++ Sbjct: 264 MAELTIIDTIYTGVALRLGDKAIANFEALERALVVKKY 301 >UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4LA29_STAHJ Length = 283 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 3/278 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L I+S L L+ SER+VAE IL PD I+ S+ +A NVS TV R + + +GF Sbjct: 5 LIIIESSLSDLNPSERRVAEYILEHPDEIINYSVQKLADLTNVSVATVVRLSKKLKCKGF 64 Query: 64 PDFKLHLAQSLAN--GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 D KL +A L +++D S+E T +F + TL L I A Sbjct: 65 QDLKLKIAYDLNEPGNIQRGYAEIDKDYSIEEVTQTVFHNNTKTLRDTERILSTENIKHA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +L+ ++K +G+G+SA +A D K R + Q N S DVV+ Sbjct: 125 FELIVNSRKTCIYGIGASALIAQDFKQKLTRIDYWCDVGSSFDEQVTLSANLSSEDVVIA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G+TK++V QLA+E A VI++T P++ + + + + E M SR Sbjct: 185 ISSSGQTKDIVNSTQLAKEKGAKVISITKYGDNPISNLSDVQLFVSSSEKAKRSGAMSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +A L++ID+L R L+ ++A+K ++F Sbjct: 245 IAMLSIIDILYICIASNDYLSNRQKLENTRKAIKNNKF 282 >UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=A6UCC0_SINMW Length = 296 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 116/280 (41%), Positives = 167/280 (59%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+LE I+ + L KS+RKVAE++LA P I+++IA A A VS+PTV RFC S+ + Sbjct: 16 NILEVIRLRRADLRKSDRKVAELVLADPKRVINATIAEAAEWAGVSQPTVIRFCASIGCQ 75 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DFKL LAQSLA G + ++ D+ + KIF+ + +LD VR+ LD ++RA Sbjct: 76 GYQDFKLRLAQSLALGMSATHSVIDASDTPAQVSAKIFDYTITSLDWVRNHLDPVQVSRA 135 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +D L++A +I FFG G+S VA DA KF F VP D Q M GDV V+ Sbjct: 136 IDALSKASRIEFFGFGASGIVARDAQQKFPLFGVPCGAETDAHQQIMVVSMLKPGDVAVV 195 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG T ++E A+ ARE+ VI + + PL + + ++ E+T+IY P +SR+ Sbjct: 196 ISNTGATLAIIETARRARESGCQVIGIVGSDGPLVEFCDIVLMVETLENTNIYTPTISRI 255 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 A LTVID+L+T LRRGA+ D +K L+ R + Sbjct: 256 AALTVIDILSTSVALRRGAEHVDLFTGMKRNLRYLRMSNE 295 >UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I8T9_9ACTO Length = 312 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 7/289 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+++L L+ S RKV E+IL P H S A + S+ TV RFCR++ Sbjct: 23 DVTTLIRTELPRLAGSLRKVGELILEDPAAVTHCSAAELGRRTGTSQATVTRFCRAIGLE 82 Query: 62 GFPDFKLHLAQSLANGT------PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 + + LAQ G + +++ DDS+E + + + + +D Sbjct: 83 SYQHLLIELAQERGRGEVSDWGSAEIGPDISPDDSLERVVQVVGSADLRAIQQTIERIDL 142 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 A+ RA L +A++I +G+G S AVA + + FR V ++ S + Sbjct: 143 DALERAAQALAKARRIDVYGVGGSGAVAQETETRLFRIGCQVRGWTEVHGAATSAALLTP 202 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIAL-TSAGTPLAREATLAITLDVPEDTDIY 234 DV + ISH+G T+ +E ++A+E A IA+ T +PLA+ A + + E + Sbjct: 203 ADVAIGISHSGATRETLEPFEMAKERGATTIAITTDPRSPLAKAADIRLISATSETSFRT 262 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLL 283 + R + L ++D L + +L + + Sbjct: 263 GSIGGRHSVLMIVDCLYVRVGQVAYQRASASLALTDHITPQHAVKARRT 311 >UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseriaceae RepID=D0W145_NEICI Length = 315 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 166/272 (61%), Gaps = 1/272 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML KI L LS +ERKVAE LA P +H+++A +A ++VS+PTV RFCRS+ +G Sbjct: 1 MLSKISESLADLSGAERKVAECALAKPKWFVHAAVAEIAEHSSVSQPTVIRFCRSLGYKG 60 Query: 63 FPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 P+FKL L+ S+ G PYV+ +N DD + S K+ +A A+L R L +S + A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMSSVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L A+++ F+G+G+S VA DA +KFFRF + V D Q M+ S DV++ Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSSEDVLIA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 IS+TG + L++ +A+EN A +IALT +PLA+ A +++ E+ ++Y PMVSRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASIIALTRNESPLAQMADCVLSIATQENAELYTPMVSRL 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 QL VID+LA G LR G L++ K+A Sbjct: 241 LQLAVIDILAIGLALRLGDAASLQLQKSKKAY 272 >UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693BD8 Length = 265 Score = 272 bits (697), Expect = 9e-72, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 2/259 (0%) Query: 21 VAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLA-NGTP 79 +A I+ + I +A + S T++RFC+S+ +GF DFKL L+ LA + Sbjct: 2 LASYIVEHAHEVVSMGITELAERSQTSPATISRFCKSLHFQGFTDFKLKLSGELAKQPSE 61 Query: 80 YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSS 139 + +++ + + I + + ++ D + +AV L A++I +G+ +S Sbjct: 62 HSYQDIVAGNPLSEIVSAIEANHLRSIADTTQLNDIKQLQQAVSALKNARQIDLYGVATS 121 Query: 140 AAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLAR 199 VA D K R D +Q S N + DVV IS++G T+ ++ + A+ Sbjct: 122 GIVAQDFYQKLVRIGKRTSVFSDPHMQITSASNLGENDVVFAISYSGDTEETIQALRCAK 181 Query: 200 ENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRR 258 E A+ I+LT G PLA + + + E+ M SR+AQL VID+L T Sbjct: 182 ERGAVTISLTKFGTNPLANLSDIRLFASTLEEGMRRGDMASRIAQLHVIDILFTSLVSEE 241 Query: 259 GAKFRDNLKRVKEALKESR 277 + L+R + +++ R Sbjct: 242 FDELIPRLERSYQLVRKYR 260 >UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PDB4_BACCO Length = 283 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 86/271 (31%), Positives = 146/271 (53%), Gaps = 1/271 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L +IQ+ S ERK+A+ IL +P +HS+I +A + V++ TV RFC+ + GF Sbjct: 11 LHRIQTMYSEFSAKERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSGF 70 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 K+ LA A ++ V + D+ ++ K+FES + TL H+L++ ++ AV+ Sbjct: 71 QALKIALAAEAARPGKNMDEAVKDTDNEKAVAIKVFESNIETLQDTIHTLNQKHLHEAVE 130 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 + +AK I F+G GS++ +A DA+ KF + ++ V D LQ +S C+ DV V IS Sbjct: 131 WICRAKHIVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFIS 190 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 H G K +++L Q ++ A IA+T +PL+++A + + E + +R+ Sbjct: 191 HAGADKEMLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPLFTVSQEADFRFSSFSARIV 250 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 QL++ID L LR + L++ KE Sbjct: 251 QLSLIDTLYVNVMLRYKDTNEEILQKGKETY 281 >UniRef50_P44540 Uncharacterized HTH-type transcriptional regulator HI0143 n=33 Tax=Gammaproteobacteria RepID=Y143_HAEIN Length = 288 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 5/282 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L KI S + L+KSE+K+A+ IL SPD S++ +A V E T+ RFCR++ + Sbjct: 6 NVLNKIGSLYQSLTKSEKKIADTILRSPDLVSQCSLSEIAKHLQVGEATLVRFCRTIGFK 65 Query: 62 GFPDFKLHLAQSLANGT----PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 GF +FKL L+ LA + + D + K+ + ++ + LD Sbjct: 66 GFSEFKLELSIELATKDNQDESILETEIMPSDDSLTIAQKLQTAVANVMEETINLLDLKQ 125 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + V +L +A++I FG+GSS A DA NK R V S + M + D Sbjct: 126 LEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAALLTSSD 185 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 V + +SH+G + ++A++N A +ALT S +P+ A + + Sbjct: 186 VAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGKLQGDS 245 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + +++AQL V+D++ ++ + E R Sbjct: 246 IGTKIAQLFVLDLIYALLVQGEEDIAAQTKQKTLNVILEQRI 287 >UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQA6_9CLOT Length = 290 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 133/279 (47%), Gaps = 1/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M E+IQ+ LS + +K+A+ ++ PD A+H ++ +A VSE +V RFC+ + Sbjct: 12 MGCTERIQATYSALSGASKKIADFVIDHPDQAVHMTVVQLAESCEVSEASVVRFCQCLQY 71 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL LA + + + ++ +D+ + K+F L L++ Sbjct: 72 AGFYEFKLSLAAEIVPASQMIQEDITVEDTEPTILEKVFAGEQQALQETLQMLNRQDFIS 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+ + + K+ FF G++ +A DA + R + D + GDV + Sbjct: 132 AVNHIAFSNKVEFFSCGNARPIAQDAHYRLLRTGIDSRIGIDDYDCLIHASMLRTGDVAI 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+G TKN +++ + A++N A I +T P+ R + + + E M M S Sbjct: 192 GISHSGSTKNTIKMLEEAKKNGATTICITGMEKAPITRVSDICMVSHSKETMFRSMAMAS 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+AQ+ +ID L + +R + + L + L E + Sbjct: 252 RIAQMAIIDALVVAVSFKRFERSKQYLTLTDKILVEDKM 290 >UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=Actinomycetales RepID=A8LV24_SALAI Length = 320 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 125/281 (44%), Gaps = 6/281 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++++ + L+ + R+VAE +L+ P+ A ++I +A + S T+ RFCR+M G Sbjct: 33 VLARVRAGADDLTGALRRVAEHVLSDPEAAARATIVELAERSGTSPATITRFCRAMGFEG 92 Query: 63 FPDFKLHLAQS-----LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 + D +L +A LA T + R + D + +I + + LD + Sbjct: 93 YADLRLGIAAETGRARLAGWTVDIGREIQPGDPLRRVLDQIIAADTRAMHDTAALLDLAE 152 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + RA + A ++ FG SA V + R V D+ S GD Sbjct: 153 VERAAVAIAGASRVNIFGASGSALVGEEMQFMLHRIGVAAWAWSDVHEGLASAALLRVGD 212 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V + +SH+G+T+ +E+ A A +A+T +PLA A +A+ T Sbjct: 213 VALGVSHSGQTRETIEMLAEAGSRGATTVAVTGFPRSPLAELADIALLTASRATTFRPDA 272 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + +R QL V+D+L R + L+R +A+ + Sbjct: 273 LSARHPQLVVLDLLYIAVAQRTHDRAHAALRRTAQAVDGHK 313 >UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYI4_9GAMM Length = 278 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 116/277 (41%), Positives = 170/277 (61%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L + L SKS K+A ++A+P+ + S+ A++A +A VSEPTVNRFC + Sbjct: 1 MTLLTDLADPLSKRSKSAHKIAACVVANPEAILASTTASLAAQAGVSEPTVNRFCTGLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GFPDFKL LA LA P + R+++ DDS KIFES A+L + + LD +A+ Sbjct: 61 KGFPDFKLSLAAELARKQPRMTRDIDPDDSAAKVAAKIFESTQASLSNTQDHLDLAALQD 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V ++ A+ IA GLG+SA+VA DA +K RF +P++ DI+ QR+ D+++ Sbjct: 121 VVAAMSNARSIALCGLGASASVALDAQHKLLRFPIPIMAHTDIINQRVVAAGLGADDLLI 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS+TGRT ++ELA+LA V +TS +PLA L + ++ EDTD Y PM SR Sbjct: 181 CISYTGRTTAMIELAELAVSRGCQVAGITSPHSPLANTCPLVLGVESGEDTDRYTPMTSR 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL +ID+LAT L +G F D+L+ VK L ++R Sbjct: 241 IAQLVIIDILATCLALEQGEAFADHLQEVKRNLSQTR 277 >UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUK3_9FIRM Length = 280 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 3/278 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + KI+S LE ++ +E+ + IL + + + + S RF + M Sbjct: 1 MSCITKIKSALESMTATEQMIGRYILEHRHEVLEMNTLELGWASGTSGAAWTRFAKKMGY 60 Query: 61 RGFPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +G P KL LAQ P V+ ++ D++ + K L +D++ + Sbjct: 61 KGLPALKLDLAQDRTDEEMPEVDLFLDPRDTLGALLHKTQTILEQNLRRTYELIDEAVLA 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A+D++ A ++ G+G S V D ++K R N PV Y D + +C GDVV Sbjct: 121 QAIDMMASAHRLFLCGIGGSGIVCMDLVHKLTRINRPVTYDRDTHVLMAQMAHCMPGDVV 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT--SAGTPLAREATLAITLDVPEDTDIYMPM 237 +++S++G T + ++A LA+E A +IA+T + PLA A + + + E + Sbjct: 181 LVVSYSGNTHTVNQMAYLAKEQGAKIIAITGHNLKAPLASLADVCLFIPRDEKEIRLGSV 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 SR L V D+L G R+ +++L + ++ +++ Sbjct: 241 TSRDGSLIVTDLLYYGVAQRQFHATKEHLVKTRKMIRK 278 >UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulator ybbH n=7 Tax=Bacillaceae RepID=YBBH_BACSU Length = 283 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 132/277 (47%), Gaps = 2/277 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L IQS L SERK+A+ ILA P AI S++ ++ AN S+ V R C+S+ +GF Sbjct: 6 LAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGF 65 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K+ +A LA T R++ + + S + K +A+ + +D + RAV Sbjct: 66 QDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVS 125 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 LL +A + F GLG+S VA DA K+ R + D L N D+V IS Sbjct: 126 LLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAIS 185 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLD-VPEDTDIYMPMVSRL 241 +G T+ +VEL +A+E I+LT T ++ A + + E SRL Sbjct: 186 FSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAATSSRL 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 AQL +IDVL G + + + + A++ R Sbjct: 246 AQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRI 282 >UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=Burkholderia RepID=Q13K65_BURXL Length = 287 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 107/276 (38%), Positives = 159/276 (57%), Gaps = 1/276 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ I+S L +L +ERKVA+++L+ D A+ +SI +A A VSEP+V RFCR++ Sbjct: 5 NLIPHIRSALANLRPAERKVADMVLSDVDFAMRASITELAQRAEVSEPSVTRFCRAIGAH 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFK+ LAQS+A G PY + V DD V++ K+ E+A+ + H R +LD + + A Sbjct: 65 GLRDFKMQLAQSVAGGVPYASTAVARDDDVQTLMDKVGEAAIGGITHARGALDPAVVESA 124 Query: 122 VDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+ A+++ FFG+GS S VA DA +F R ++ D LQR+ GDV Sbjct: 125 IAALSSARRVFFFGVGSGSGLVAQDAALRFLRLDIASTAFTDGHLQRLYAGLMEPGDVAF 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+GR+ + E Q+A+E A IALT+ G+ LA + + L VP D P VSR Sbjct: 185 AISHSGRSVEVNESIQIAKERGATTIALTNVGSRLAWLVDIPLLLRVPSPIDPNTPGVSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 L L ++D LA G L+ G K + ++ K L Sbjct: 245 LVHLCIMDALAIGVALKAGPKTLEKMRHAKARLASH 280 >UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=Gammaproteobacteria RepID=B4EZY5_PROMH Length = 295 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 5/280 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ + + L++ +++A+ IL P SIA ++ E TV RFCR++ +G Sbjct: 14 ILDTLGAMKNSLTRVSQRIADYILFHPTEVTQLSIAQLSQATKAGEATVVRFCRTLGYKG 73 Query: 63 FPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F DFK+ LA +A + +P ++ V+ D + + K+ + L + LD + Sbjct: 74 FQDFKMDLAIEMATSDNDESPILDAEVSHQDDIHTIGLKLQATINNVLSETLNLLDMQQV 133 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV+ L A + G+GSS A D NK R V + M GDV Sbjct: 134 QGAVNALLSANYVFICGVGSSGITAEDLKNKLMRIGYRVDAVTNNHFMYMQASLLKSGDV 193 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 + ISH+G + V +LA+E A IALT + G+ + A + + + Sbjct: 194 AIGISHSGNSLETVHALKLAKEAGASTIALTHNLGSQIMEYADHHLINGNRQGKLQGDSI 253 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++ AQL V+D+L T + ++ R ALK++ Sbjct: 254 GTKTAQLFVLDLLYTLLVQAKPETVKEQKLRTLNALKQTH 293 >UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A8RRF4_9CLOT Length = 289 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 134/273 (49%), Gaps = 4/273 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +IQ S +E+ V + +P+ A SI +A + S T+ R CR M Sbjct: 3 SVLVRIQEYSAQASGAEKGVLRFLRENPEEAAGYSIKQLADKTFSSAATIVRLCRKMGFD 62 Query: 62 GFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ + + L A T + + + +DDS+E K+ + +LD+ R +D + Sbjct: 63 GYKELQKSLLYESALRRESTRPMEQEIKKDDSLEELVNKVTYKNIVSLDNTRKLVDLDIL 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 N+ V+LL +++ + FG+GSS VA D K R N V DD Q + N D+ Sbjct: 123 NQCVELLDRSQTVYLFGIGSSLLVARDMYLKLLRVNKACVICDDWHAQLLQARNIRSCDL 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 +++S++G T+ ++ A+ AR +A VI ++ +PL R A + + E M Sbjct: 183 ALIVSYSGLTEEMITCAREARLREAPVITISRFEQSPLVRLADYNLAVAATELIFRSGAM 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 SR++QL +ID+L T + +R + + ++ Sbjct: 243 SSRISQLNMIDILYTAYVHKRYDECMEQFRKTH 275 >UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator n=2 Tax=Enterococcus casseliflavus RepID=C9AZQ1_ENTCA Length = 283 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 151/279 (54%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++ +I++ + LS E+ +A+ IL +P HSSI+ ++ E +++ T +F + + Sbjct: 3 VSIRLQIKTLYKDLSLKEQAIADYILENPSKVSHSSISDLSNELGIADSTFFQFTKKLGY 62 Query: 61 RGFPDFKLH-LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF DFK+ L Q ++ N+ + D+ + K+F+S M TL ++ L + + Sbjct: 63 NGFKDFKMAMLMQENDFSAISIHENIQKSDNELTMAQKVFDSNMTTLTDTKNLLKEEDLK 122 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A ++ Q+K++ FFG+G S VA DA +KF R + V +S D +Q M + D Sbjct: 123 LAAAMINQSKRLFFFGVGGSEIVATDAYHKFLRSPITVFHSSDYHIQLMEASLLTPDDCG 182 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 + ISHTG+++ +ELAQ+A+ N A +I +TS A +PLA+ + E + Sbjct: 183 IFISHTGKSRETIELAQVAKNNGAKIIVITSHAASPLAKLGDVVFISISEETEFRSEALA 242 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR+AQL+++D L K + ++ +++ ++ + + Sbjct: 243 SRIAQLSIMDSLYVILMFINRDKAQQSIAKIRRSISKIK 281 >UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C2G7_BEUC1 Length = 285 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ IQS+L+ + S R+VAE IL P + +I+ +A + SE T+ RFCR++ Sbjct: 1 MSIQSSIQSRLDQFAPSMRRVAEAILERPQVVLEKTISELASQCETSETTIVRFCRTLGL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNR------NVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 G+ +L LA + ++ +D + + KI + ++ SLD Sbjct: 61 TGYVQLRLELATEIGRENAQRGELGDHGADILAEDGLAAMAAKIAFTDTLGIEETLASLD 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + R VD + A + +G+GSS + A D K FR DD + S Sbjct: 121 IEHLERVVDAIDTAGRSVTYGVGSSGSSAADLQRKLFRIGRVAFTFDDPHDAVTAAALSS 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 GDV V SH+G T+ + A ++ A +A+T+ A + LAR A + + V E Sbjct: 181 PGDVAVAFSHSGATREALAFLATAGKHGARTVAVTNSAESALARAADIVLVTSVRETQFR 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR+AQL ++D + G RR + D LK A +E R Sbjct: 241 SGAMASRIAQLMIVDCIFVGVAQRRYDQTVDALKSTYAAAQELR 284 >UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789683 Length = 289 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 139/277 (50%), Gaps = 3/277 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L I S L+K+E+KVA+ + P+ + +++ ++ +A V E +V RFCR + R Sbjct: 12 NTLLMISSIYSSLTKTEKKVADYVKGFPEETVLATVTDLSEKAGVGETSVIRFCRKLGFR 71 Query: 62 GFPDFKLHLAQSLANGTPYV-NRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL +AQ L + P V + +++E D + + K+ L + ++ + Sbjct: 72 GFHEFKLSVAQDLVDRPPSVVDTSIDEQDDLMTVARKLTMQHEILLKNTLDLVNADNLRM 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVD L A K+ +G+GSS A D + R + V D + MS GD+V Sbjct: 132 AVDKLLAANKVYVYGVGSSGITALDLHYQLMRLGLNVEAHRDSHIIAMSASLVKKGDLVF 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T++LV+ + A++N A VI LT +P+A A + + E + + Sbjct: 192 AISTSGSTRDLVDAVKEAKKNGADVICLTGHLRSPIATYADTVLLVSSREMPTEGGALAT 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + Q ++++L T T++ ++LK+ ++ + Sbjct: 252 KFMQTYMLNILTTLLTMK-KEDASESLKKTASSVADK 287 >UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZR0_ERYRH Length = 280 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 137/278 (49%), Gaps = 1/278 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + +I+ + + +E+++AE IL + D ++ S A E N S + RF + + Sbjct: 1 MSCIYRIKENMHTYTDTEKRIAEYILENKDEVVNFSSQHFAKEINSSAAAIVRFSKKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ LA+ + ++ + E+D++E+ K S T D+ L+ ++ Sbjct: 61 NGFTHLKVELARDHSEEEQSFDKLIKEEDTIETMVRKSHYSNHRTFDNTYKLLNLEVLDA 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ ++ A++I G+G S V D +KF R + VVY DD L+ S + ++ DV + Sbjct: 121 SIAAISNARRIYLLGIGGSGIVCQDLYHKFVRIDADVVYFDDFHLEMSSLTHITENDVTI 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 +S++G+T+ ++ +LA++ A IA+T G LA+ + I + E + S Sbjct: 181 ALSYSGQTREIIMAQKLAQDKGATTIAITQVGRNELAKNSDFVINIPKEESEVRLGSIAS 240 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R + L + D+L G + R + ++ +K R Sbjct: 241 RFSMLAISDLLYLGVAKNNIEETRRKIVNTRDTIKSIR 278 >UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W838_ATOPD Length = 304 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 5/269 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + +++ ++ S +ER + + IL+ P+ + SI +A + S TV R C+ + G Sbjct: 4 VRLRLEEYRKNASSAERDIIDYILSDPEAVVGQSIHKLAAQTYTSASTVVRLCKKLGCGG 63 Query: 63 FPDFKLHLAQSLANGTPYVNRNVN---EDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 + +F+ L LA + V D+ + K+ +++L+ LD ++ Sbjct: 64 YKEFQQALIYELAVSNKSNDIAVGGVIAGDTTDVIIEKVTAKNISSLELTMQLLDAQVVD 123 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 V L+ QA I FG+G+S VA D K R N+ SDD Q + N S D+ Sbjct: 124 SVVSLMMQAHSICLFGMGASLLVARDLQLKLMRLNINCNLSDDYHSQLLYAKNMSREDLA 183 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT--SAGTPLAREATLAITLDVPEDTDIYMPM 237 +++S++G T+ +E A +A+ N A VI++T + L + + + E M Sbjct: 184 IVVSYSGLTREAIECAWIAKANGAKVISITRGGIDSELIHRSDYVLGVAETEHIMRSGAM 243 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNL 266 SR+AQL V+D L + R K Sbjct: 244 SSRIAQLNVVDALFAAYVNRNYEKSVKRF 272 >UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMQ5_CLOPH Length = 285 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 81/283 (28%), Positives = 137/283 (48%), Gaps = 6/283 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ K +S ++ L+ SERKVA L + +N IA +A E+ VS+ T RFC+++ Sbjct: 3 NIEIKTRSIMDSLNNSERKVATYFLNNIENIFSIPIARLAEESGVSQVTWIRFCKAIGFD 62 Query: 62 GFPDFKLHLAQSLANG-----TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G D K L L + ++ + ++E I + + ++ +D Sbjct: 63 GLKDLKKSLFMELNSSTSEGIDTSDFSDIKKHSTLEQMCNTIRNTTLQAVEDTIKLIDYD 122 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + + V +L++A I FG+G+SA VA D K R N V +S D+ Q + N Sbjct: 123 TLKKVVSILSKASCIKLFGVGASALVADDFCKKLLRINKNVNFSYDMHTQLVYGANARPE 182 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 DV V+ S++G TK ++E+ LA++++ I +T +PL A +I + PE Sbjct: 183 DVAVIFSYSGTTKEMLEIMDLAKKSNCPTIVITKYTKSPLVASADYSIYISAPEINYRSG 242 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 M SR+AQLT++D+L T + L++ E + R Sbjct: 243 AMSSRIAQLTIVDLLFTSLANKNYTSVEKYLEKSSEVCRSHRV 285 >UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=Propionibacterium acnes RepID=D1YCB1_PROAC Length = 290 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 7/283 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I + +E +VA VILA PD + +S + +A A VS TV RFCR++ Sbjct: 4 SLLPRIDMARTTMRPAEAQVAAVILAKPDWTLAASTSQLAEAAGVSPATVVRFCRALGMS 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRN------VNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ + + LA+ L+ T + R+ + DDS+ KI T+++ ++D Sbjct: 64 GYRELRTELARDLSRRTLELERSSVAEGTITLDDSLTQMITKIAFHEARTIENTARAVDA 123 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + ++ A + A FG+GSS VA D K R + + D +Q + C Sbjct: 124 DELEAVASAISIAPRTALFGVGSSGLVASDLSEKLERIGLVCQHHQDTHMQLVHAALCKR 183 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 V + IS +G T+ +VE +A+++ A +A+T +P+ R A + E Sbjct: 184 PCVALGISFSGNTQEVVEALTVAQKHGATTVAMTGLPDSPVGRLADHVLVTSARETQVRA 243 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR+AQL V+D L L + A+ R Sbjct: 244 GAMSSRMAQLAVVDFLFARVAQLCMDDLETLLSSTRTAVSTHR 286 >UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N1V0_9FIRM Length = 277 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 1/276 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN KI+ + +E+ +A+ IL + + + S ++ + S + RF + + Sbjct: 1 MNSYAKIKEAQSSYTSTEKVIAKYILENAADVLKCSAQSLGEKTGTSAAAIIRFSKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF + K+ LAQS ++ ++E+D + + K M T+ +D + ++ Sbjct: 61 NGFSELKMSLAQSKRAPEEKIDFIIDENDDIVTLADKCCRLNMNTVLKTYQLIDTNQLDN 120 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A+ L A I FG+G SA VA D K R V+Y+ D+ +Q + + D + Sbjct: 121 AIKKLIAANTIYLFGVGGSAIVAQDVEQKLTRIGKKVIYNKDLHVQLTFSESMNKEDAAL 180 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G TK LVE+A++ + + +I++T PL++ + + + + E + S Sbjct: 181 FISYSGTTKGLVEIAKMIKNKNVPIISITQFKPNPLSKLSDIILQVPNEEKEIRMGAISS 240 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 R++ L + D+L G +D L K + + Sbjct: 241 RISSLVMTDLLYYGVFKNDLTGNKDKLIETKRIVSK 276 >UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=Firmicutes RepID=A6LVH8_CLOB8 Length = 282 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 148/279 (53%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++ KI+S LS E+ +A+ IL +P + H+SI+ ++ E NV++ T+ +F + + Sbjct: 3 VSVRLKIKSLYNGLSAKEQNIADYILENPISVAHNSISYLSDELNVADSTLFQFAKKLGY 62 Query: 61 RGFPDFKLH-LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF +FK+ L + T ++ + DD+ + K+F+S + TL + + L + Sbjct: 63 SGFKEFKMAILIEENNFSTTSIHEKIEIDDNELTMAQKVFDSNIKTLTNTKKILGLDDLK 122 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A ++++ + + FFG+G S +A DA +KF R V +S D +Q M + D Sbjct: 123 KAAEIISNSNLLYFFGVGGSGILAEDAYHKFLRSPAHVRHSTDYHIQLMEASLLTPQDCA 182 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV 238 + ISHTG++K + +A++ +E A VI +TS A +PLA+ + E + Sbjct: 183 ICISHTGKSKETIRIAEIVKEAGAKVIVITSHASSPLAKIGDVVFISISEEIEFHSEALS 242 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR++QL+++D L K ++ L +V+ + + + Sbjct: 243 SRISQLSILDSLYVILMFMNKEKSKEALSKVRRTIWDVK 281 >UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=Clostridium RepID=A6LUR0_CLOB8 Length = 281 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 5/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L+ I+ + + E+ +A+ ++ + + I S +A S PTV RF + + Sbjct: 1 MNVLQYIKQNYDSFTDREKLIADYLIETKERIISMSARDIAEATKTSAPTVVRFAKKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDS---VESYTGKIFESAMATLDHVRHSLDKSA 117 + KL L+ +++ D+ ++ I +S + ++ LD+ Sbjct: 61 NTLNELKLKLSINISKEEEAGAIQFQYLDNDLGTKNIIYGIKQSVDSIMEQTVSLLDEEC 120 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +++A++LL AK I F +G S V D K R N + + D LQ S + +GD Sbjct: 121 LDKAIELLISAKNIYIFSVGVSGLVGQDFYYKLSRMNKRCICNTDTHLQITSSVLLEEGD 180 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT--SAGTPLAREATLAITLDVPEDTDIYM 235 V + IS++G TK +++ + AR VIA+T S +A + + I + E + Sbjct: 181 VALAISYSGETKEVIKCVKNARNRKVPVIAITKASVNNTIADISDIVIRIPAVEKSIREG 240 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR++QL +ID+L G + + L ++A+KE Sbjct: 241 AISSRISQLAIIDMLYIGMIRNNIKEVEEKLISTRKAVKE 280 >UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=Q2G836_NOVAD Length = 296 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 1/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N L +I+S L +SK+ K+A ++ P + + SI +A + SE +V FCRS+ Sbjct: 19 NALTRIRSALPQMSKTAAKIAAYVVEHPADVVGMSITDLAALVDASEGSVINFCRSIGLG 78 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF KL LAQ + +++ ++ +DS E+ K+F S + L LD A+ A Sbjct: 79 GFQHLKLSLAQEIVQPVHFIHEDLEREDSTETVCRKVFHSGIQALRDSLSVLDPKAMAAA 138 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD++ A+++ +G+GSSA +A DA + R + D +Q +S C V+ Sbjct: 139 VDIIRAARRVEIYGIGSSAPIAEDAHYRLLRIGLDARVVIDSHVQAISASRCDKDVAVLT 198 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G T V +LA E A I +T+ G +P+ A + + E M SR Sbjct: 199 ISHSGSTNETVAATRLAHEAGARTIVITNFGRSPIQAYADVVLFTMARETRFRTEAMTSR 258 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +AQL VID L L + D LK+ + L RF Sbjct: 259 IAQLCVIDALIAALALADYDRSTDVLKQTFDVLSIKRF 296 >UniRef50_B9K581 Transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) n=3 Tax=Proteobacteria RepID=B9K581_AGRVS Length = 291 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 1/276 (0%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I+ + L+ E KV + + D + +S+ +A A VSE V + + + GF D Sbjct: 14 RIRMMMPMLTPLEAKVVDTVFGMRDFSEETSLKQIAENAGVSEAMVVKITKKLGFSGFRD 73 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 F+ ++Q T +++ ++ DD+ K+F +++ L+ LD +A ++A D++ Sbjct: 74 FRSSVSQYNRQPTTEMHQELSVDDTSLEIVQKVFRTSIHALEETLAILDMAAFDQAADMI 133 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 +A+ F+G+G SA +A D +KF R V DD + MS +D DV + SH+ Sbjct: 134 HKARNRDFYGVGGSAQIARDVAHKFLRIGVRASVFDDSHMMLMSAALLADTDVAIGFSHS 193 Query: 186 GRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T ++E QLAR+N A IA+T+ G+ LA+ A + + + +R+AQL Sbjct: 194 GNTIAVIEALQLARKNGASTIAVTNYGSSALAQSADVVLCSTAQGSPLMGENAAARIAQL 253 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 ++D + R NL R A+ R D+ Sbjct: 254 NILDAIFVAVAQRDYQAAERNLDRTMSAVTSKRRDR 289 >UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Clostridiales RepID=C2L140_9FIRM Length = 285 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 149/281 (53%), Gaps = 6/281 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L KI+S +K+E+KVA+ IL +PD + SI+ +A V + +V RFC++M+ + Sbjct: 4 DFLTKIRSAYNQFTKAEKKVADYILQNPDQVLFMSISDLAETCKVGDTSVFRFCKTMNVK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRN-----VNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ +FK+ L+ S+ +D+++ GK+ E + ++ LD + Sbjct: 64 GYQEFKMTLSLSMRGNGKESKEGDGGNVSLQDNNIAELAGKVLEETIDSIKETHSLLDFN 123 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 + A++ L++AK+I FFG+G+S A AMNKF R V S+ + Q MS G Sbjct: 124 KVTEAMNALSKAKRILFFGVGASMLTAMKAMNKFHRIEPKVYCSEMVSQQLMSAATMERG 183 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 DV V+ S++G T+++VE+A+LA+E+ A V+++T + L + + + Sbjct: 184 DVAVIFSYSGATRDIVEIAKLAKESGATVVSITRFQKSELTDYTDILLLCGANVGSLQKG 243 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + ++QL ++D++ T + R L++ A+K+ Sbjct: 244 STSAEISQLFLVDIMYTEYYRRHYEYCNQILEKTTVAIKDR 284 >UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n=4 Tax=Firmicutes RepID=A8FIY5_BACP2 Length = 286 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 149/278 (53%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ I++ LS +++K+A IL +P + SI+A+A E N SE T+ RF R + Sbjct: 8 NIFSHIRTTFHSLSPTQKKIANYILENPQKVVLHSISALASECNTSETTIFRFLRKIGYE 67 Query: 62 GFPDFKLHLAQSLANGTP-YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + F++H+AQ +A TP + + DSV K+ E ++ ++H ++ A+ + Sbjct: 68 SYQVFRVHVAQDIATNTPQSIYGEIEASDSVADIKHKVIELTTNSIQDMKHIVEDHAVTQ 127 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ + QA K FFG G+S+ +A DA +KF + V D + M + ++ D +V Sbjct: 128 FIEQMKQAHKTVFFGAGASSFIAGDAYHKFLQLGFDVSLCSDPHMMNMIATHATEHDFIV 187 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+G ++ +++ Q A+E A + ++TS + LA+ + + E T M+S Sbjct: 188 AISHSGESREILDAVQFAKEKGAKIASITSYPKSELAKRSDFHLLSSSRETTYRSDSMIS 247 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R+ QL +IDVL L G+ +N+KR + A+ +++ Sbjct: 248 RINQLVIIDVLYVAAVLELGSNAIENVKRSRLAVAKNK 285 >UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJ20_EXIS2 Length = 284 Score = 262 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 2/274 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + +I + E L S RKVA+ +LA + +I +A E+ S V RFCR++ +G Sbjct: 5 IFSQISAVHEELPSSSRKVADFVLAHMNEIAGMTIHHLAEESGTSAAAVVRFCRALGLKG 64 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 +P+ ++ ++ A ++ +++ K +++ L L + I A Sbjct: 65 YPELRMRISADTARTDLKGYHDIEKNERPADLVEKTVSNSIQALQDTAKQLSEDRIAEAA 124 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 D+L QA+ I F+G+G+S VA DA K+ R + D L N S DV I Sbjct: 125 DVLDQARAIYFYGIGASNVVALDAAQKWTRVGKLTIQESDQHLVATILANASQDDVFFAI 184 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLD-VPEDTDIYMPMVSR 240 S++G T+ +VEL +LA+ VI+LT G +++ A +A+ PE + SR Sbjct: 185 SYSGETEEVVELIRLAKIRGLKVISLTRFGDNRVSQLADIALWTSRAPEAPLRSAALSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 LAQL IDVL + + L+ +E++K Sbjct: 245 LAQLFAIDVLFLSYAAVHYDDTIERLQYTRESVK 278 >UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oeni RepID=Q04DU1_OENOB Length = 282 Score = 262 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 149/280 (53%), Gaps = 1/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ E I+S E L E+++A+ IL+ D+ + ++I +++ + +S +++RF R + Sbjct: 3 NVTETIRSYYEKLHPGEKRIADYILSHQDSVMDATIQSLSDKIGISTASISRFTRHLGYP 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F DF + L+ S N + + + D E K+F + +A L +++ ++R Sbjct: 63 NFRDFLIALSASKKNSSSDFFTEIKQSDQSEQIVKKLFSAGIAALTATAANINMKDLDRV 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD L + KI FFG+G S+ VA +A +KF R N+ +V D +Q M + + D+ ++ Sbjct: 123 VDWLVSSNKIGFFGIGGSSIVAFNAYHKFLRTNLNIVSHPDYDIQIMQAAHLTSEDLGIV 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+GR ++ + + REN + ++A+T+ +P+A+ A + + E M S Sbjct: 183 ISHSGRNQDTLLVENKLRENGSKIVAITAFPESPIAKNADIVLNSYSEEVNFRQESMSSL 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +AQ+T+ID L T R + + ++ ++++R K Sbjct: 243 VAQITIIDTLFTLVGHRLNEQTDQVINSMRRVIEQTRVRK 282 >UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n=22 Tax=Gammaproteobacteria RepID=A4TMJ1_YERPP Length = 292 Score = 262 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 132/279 (47%), Gaps = 5/279 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ + + L++S +++A ILA P SIA ++ E T+ RFCR++ +G Sbjct: 13 ILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKG 72 Query: 63 FPDFKLHLAQSLA----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F DFK+ LA +A + ++ +V E D + K+ + L + L ++ Sbjct: 73 FQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESV 132 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + V +L A +I FG+GSS A DA K R + V + + M + GDV Sbjct: 133 EQVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMNPGDV 192 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 + ISH+G + V+ +LA+E A +ALT + G+ + A + + + Sbjct: 193 AIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQGDSI 252 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +++AQL V+D++ A+ ++ +A+ ++ Sbjct: 253 GTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQN 291 >UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=Bacteria RepID=D1AUV3_STRM9 Length = 272 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 143/277 (51%), Gaps = 8/277 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + IQS SK E KVA+ ++ D + + + NVSE T+ RF + + Sbjct: 1 MKYITLIQSFYPSFSKQEIKVADYVIKEKDAICFMPLHEITKKINVSEATIVRFVKKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +GF DFKL +A+ +A +E ++ E Y I + + T+ + ++ ++K + Sbjct: 61 KGFIDFKLEVAREIATIE-------DERNTKEHYIENIEYNIIETIKNTKNLINKEDVEN 113 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A++ + +KK+ FG+G+S A + N+F RF D Q M ++ DV+V Sbjct: 114 AIEAIENSKKLYVFGMGASGVAALEFQNRFMRFGKIGHSVSDGHFQVMYASTTTEKDVIV 173 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 +IS +G T +L+ +A+EN +IA+T+ +P+A+ + + I E +VS Sbjct: 174 VISLSGETVDLIYPLSIAKENGCKIIAITNYILSPIAKLSDIVILTSGKETLLNGGALVS 233 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +++QL +IDVLATG+ LR K + + + EA+ Sbjct: 234 KMSQLYIIDVLATGYALRNSKKAKLVRQGMAEAIANK 270 >UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=Proteobacteria RepID=A1AYM0_PARDP Length = 287 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 1/274 (0%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 +I+ +L L+ E +V + I D + +++ ++ +A VS+ V + + + GF Sbjct: 12 AQIRMKLPFLTPLEARVVDTITGRNDLDLTTALRQVSEDAGVSDAMVVKIAKKLGFNGFR 71 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 DF+ L ++ ++ +DS K+F++++ L+ +D SA +RA L Sbjct: 72 DFREALVVYRQTDVASLHSEISPEDSSADIIRKVFQTSIQALEETMSIIDVSAFDRAATL 131 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 L A++ F+G+G SA +A D +KF R + DD + MS DVVV SH Sbjct: 132 LHGARQRDFYGVGGSAQIARDVAHKFLRIGLRAGVQDDPHMMLMSAALLGPEDVVVAFSH 191 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G T N++E A+LAR+ A VIA+T+ T PL+ A +A+ + +R+AQ Sbjct: 192 SGTTSNVIEAARLARQQGARVIAITNYATAPLSELADIALCSTAQGSPLLGENAAARIAQ 251 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L ++D + R + L R + A+ R Sbjct: 252 LNIMDAIFVAVAQRDLERAEAQLARTRNAVDNKR 285 >UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium RepID=C3WE65_FUSMR Length = 284 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L KI S L+++S +E+KV E IL +PD + +A S+ TV RF + + Sbjct: 1 MGVLIKINSMLDNISSTEKKVGEYILENPDKIKDLNTYELANITKTSQATVVRFAKRLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +GFP FKL L+Q L N ++ + DDS E KI + + D Sbjct: 61 KGFPAFKLALSQDLGNRKAESHVNIMHEEIKPDDSFEIIGRKISNENITAISDTYEVTDF 120 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + +AV +L++A+KI G+G S VA D K + D +Q + Sbjct: 121 TELEKAVVMLSKARKIMLAGIGFSGIVAKDFYYKLLELGKHAMIEVDTHMQLSCLSTMGE 180 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 DV+ +ISH+G+T + + ++A+ VIA+TS A P+ A + + Sbjct: 181 DDVLFVISHSGKTMEMYNVVKVAKSKGITVIAMTSIAPNPIKDLADIRLNTVEMNSNFRS 240 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + R++QLTVID+L L +D + E ++ + Sbjct: 241 TALSPRISQLTVIDMLYVKMMLENK-NMQDYIFDAIELVQGFKI 283 >UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA31_9ACTN Length = 281 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 5/273 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++L +++ ++ S +ER++ E IL P++ SI +A A VS T+ R C+ + Sbjct: 2 VSLLVRLKQYRDNASPAERELIERILDDPESISGLSIHELAAYAFVSPSTITRLCKKLGL 61 Query: 61 RGFPDFKLHLAQSLA---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 +G+ +F+ L LA + ++ D+ K+ + +L V D Sbjct: 62 KGYKEFQHLLIYDLALLRESSSSKIEDLAPTDTSRQTIEKVTRDNIDSLRLVEKLNDPET 121 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 VDL++ A+ I FG+G+S A D K R V DD Q + N D Sbjct: 122 YEACVDLMSDARTINLFGMGASLLSARDMHYKLLRIGVSCNLIDDWHGQLLCASNSGPED 181 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS--AGTPLAREATLAITLDVPEDTDIYM 235 + + IS++G T+ + ARE VIA+T + LAR+A + + E Sbjct: 182 LSIAISYSGLTEEVNVCVGRARERGGKVIAITGSAFDSKLARQADEVLLVGSTEPLMRSA 241 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKR 268 M SR+ QL VID+L F R A+F + L++ Sbjct: 242 AMASRIGQLGVIDILFKSFVNRNYARFSEVLEQ 274 >UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG85_KOSOT Length = 275 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 4/277 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++ +++ + LS+SER+VA+ I+ PD+ IH +I +A ++ SE TV R + + G Sbjct: 2 IIVQLKGIYDSLSESERRVAKYIIERPDDVIHYTITELAKFSHSSEATVYRLVKKLGFSG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + FK+ LA+ L+ + + S +++ +I + ++ LD A+ +AV Sbjct: 62 YQSFKISLARELSIPQEVIEE--GSEGSYQNFVERIVQENISLAKETMAVLDLDALKKAV 119 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +L+ A+++ FFG+G SA VA F + D Q M ++ DVVV I Sbjct: 120 ELIINARRLVFFGVGRSAVVAQSGSFNFALLGFSSTHYIDPHAQVMVASGLTNEDVVVGI 179 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG ++ V+ Q+A A I +TS +P+ + + VSR+ Sbjct: 180 SHTGTIRDTVKSVQVAHAAGAKTIVITSGINSPITEVGDVVLYTAAG-KPSTSEFTVSRI 238 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + ++D+L R + + +++E LK RF Sbjct: 239 GEFLILDILYKTVVARMSERLSKHFDKLEEILKPKRF 275 >UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SX74_9RHIZ Length = 314 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 156/288 (54%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ L ++ER+VA+V+L A+ +S AA+A A VSEPTV RFCR++ Sbjct: 27 DIISLVKDSYSELRRAERRVADVVLDDVKYAVDASNAALAQRAGVSEPTVTRFCRAIGCE 86 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDD-SVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G DFKL LAQSL G Y+ ++ + + +F A L LD + + Sbjct: 87 GLRDFKLKLAQSLVVGALYLAKSPAPGSGNGMPFWNAVFGEARRALQEAERQLDPVELQK 146 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A +L+ +A+++ FGLG SS+A+A + + FR+ + V D L RM+ GD+V Sbjct: 147 AAELIAKARQVTVFGLGGSSSALAQETQYRLFRYGITVNAQCDPYLMRMTASTLKPGDLV 206 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + IS TGRT+ ++E +LA+ A I +T+ T LAR + + + VPE D P S Sbjct: 207 IAISATGRTREVIEAVELAKHYRANAIGVTAPDTELARACDVRLAVAVPEYPDTLKPTAS 266 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R A L +ID+LA + A R+ ++R+K + R K++ L D Sbjct: 267 RYAFLAMIDLLAVASAYKLDASARETVRRIKYNAQIHRTGKEMEPLGD 314 >UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6A5_9CLOT Length = 282 Score = 259 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 135/276 (48%), Gaps = 7/276 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L K++ +LS +E +V E IL P + ++ +A E+ S TV R C+ +D Sbjct: 6 MSVLIKLRD-YRNLSAAENQVREYILKYPKKVLEYTVYELAKESFTSPATVVRLCKKIDI 64 Query: 61 RGFPDFKLHLAQSLANGTPYV-----NRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +GF K+ LA+ + ++DS + KI A+ T++ R +++ Sbjct: 65 KGFARLKVLLAEETKYFQDMKLNLLDTTTIEKNDSPHAIIEKITNIAVKTIEETRVLVNE 124 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + LL +A + F+G+G+S+ VA DA KF R V+ Q + +N Sbjct: 125 KQFMQVARLLQKAVIVDFYGVGASSPVAIDAQYKFMRIGKNVITYQLYDRQYVQAVNSDA 184 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIY 234 V ++IS++G TK ++++A + ++N V+A+TS+G L R A + + E Sbjct: 185 SHVGIIISYSGETKEMLKIAGILQKNGTPVVAVTSSGENSLNRIADYNLFVTAKETVFRS 244 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 M SR AQL +ID+L + + +++ + Sbjct: 245 GAMASRTAQLYIIDILYALYCSLDYDESIKKIQQTR 280 >UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus lactis RepID=Q02VU4_LACLS Length = 282 Score = 259 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 142/279 (50%), Gaps = 1/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ +I+S ++LSKS++ +++ ++A+ D+A SI A + VS T++RF + + Sbjct: 4 TLISRIRSYYDNLSKSDQAISDYLIANIDSAAMLSIQEFAQKTQVSTATISRFSKKIGFN 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F + KL + + + ++ D + K F +++L+ + + +++ Sbjct: 64 SFQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLDQT 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +++L +A FFGLG S AVA A +KF R + VY D Q+M + D + Sbjct: 124 MEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDCAFV 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISHTG+ K+ + L ++ + +IALTS +PLA+ A +A+ E + + S Sbjct: 184 ISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAVAST 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 ++Q++++D L + ++ L +++ + +SR Sbjct: 244 VSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSRIS 282 >UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=Gammaproteobacteria RepID=A0KFB6_AERHH Length = 286 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 145/289 (50%), Gaps = 11/289 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L KI + LS SE K+A+ ILA P+ H S +A +A+VS+ ++ +F + + Sbjct: 1 MLTLSKISNIRSQLSPSELKIADYILACPEQVTHFSSQELAQQADVSQSSIVKFTQKIGF 60 Query: 61 RGFPDFKLHLAQSLANGTP-------YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GF FKL +++ L + + DD +E+ K+ + + ++ +L Sbjct: 61 KGFTAFKLAVSEDLGRKHAIKTDNVGDLYNGIGRDDDLETMAKKLAQEKINSIVETTQAL 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + R +D++ QA ++ G+G SA A D K + V +++ D +Q Sbjct: 121 DNATLARVLDVINQAGRVQLVGIGGSALTAKDLWYKLLKIGVTTLFAQDSHVQISIAQTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTD 232 GDV +++S++G +++++ A+LA+ N A +IA+TS PL + A + + E+ Sbjct: 181 GPGDVQLVVSYSGASRDVLAAAELAKRNGATLIAVTSFRNTPLRQMADMVLDTVADENEL 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 + SR AQ T+ D+L G RR + + + A+ R +K+ Sbjct: 241 RISSISSRTAQNTITDILFLGLVQRR-DEAWALIDGTRGAID--RLNKE 286 >UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDH7_9ACTO Length = 342 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 7/282 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +L ++++ L L SER++AE IL P ++A +A + S TV RF + + Sbjct: 11 TVLVRVRAALPGLRPSERRIAEAILDDPHATAGLTVAELAAACDTSTTTVVRFYQRIGYG 70 Query: 62 GFPDFKLHLAQSLANGT------PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 + D +L L + P + +++ DD+++ K+ + ++ LD+ Sbjct: 71 RYKDLRLDLTREATREQLETANLPAASGDIDRDDTIDDIIAKVAANETLSIADTAEILDR 130 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 A+ RAVD + A+++ FG+G+S V D K R + D + + + Sbjct: 131 DALARAVDCVLNARRVDSFGVGASGFVGLDLQQKLTRIGRTALSWLDTDAAWSAAVTLDE 190 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIY 234 V + ISHTG T VE +A A IA+T+ LA A + +T E Sbjct: 191 QCVAIAISHTGTTAATVEFLAMAAAEGATTIAITNHDNTALAETADVVLTTAARETRFRS 250 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + SR+AQL V+D L TG L++ A+ Sbjct: 251 GALGSRIAQLMVVDCLFTGVARASYDASMSALRKTYAAVHRK 292 >UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID=A0Z4E2_9GAMM Length = 291 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 128/277 (46%), Positives = 185/277 (66%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +IQ+ L LSKS+ K+A V+LA P+ A H+SIA +A +ANVSEP+VNRFC+ + Sbjct: 6 NVLTQIQAALPGLSKSDTKIAHVVLADPEAATHASIALLAQQANVSEPSVNRFCKRLGAT 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+PDFK+ LA+SL G Y+++ V+ +D+V +Y GK+ ++ + L R L + A Sbjct: 66 GYPDFKIWLARSLVAGVRYISQVVDPEDTVTTYPGKLVDNTVNALLLAREQLPLKTLEVA 125 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ L A +I FFG+G+SAAVA DA +KFFRF PV D ++ RM S GDV V Sbjct: 126 VEHLDAAGRIYFFGMGTSAAVAQDAEHKFFRFQTPVTTHTDPLMLRMLAAGGSQGDVFVF 185 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISHTGRT+ +V+ A LA + A VI+LT+ +PLA+ + I L+ PE+T+ Y+PM SR+ Sbjct: 186 ISHTGRTEAIVDAAALASASGATVISLTAQDSPLAQVSHCVIGLEAPENTEDYLPMTSRI 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L +ID+L TG TL+RG ++L R+KE+L +R Sbjct: 246 VHLVIIDILVTGVTLKRGEPCIEHLARIKESLLPTRL 282 >UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ALE3_SEBTE Length = 282 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 3/275 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ KI S + + SE KV I +P++ + +I ++ + E T+ RFC+ + Sbjct: 7 NLFNKINSLKKSFTASETKVFNYIEKNPESVVRMNIRELSNAIDTGETTIIRFCKKTGFK 66 Query: 62 GFPDFKLHLAQSLAN--GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+ DFK+ L SL+ + ++ D++ S I+ ++ L ++ ++ Sbjct: 67 GYNDFKISLISSLSKEKQSNKYKIDILADENYNSIAEGIYNNSFNVLKDTLSLINNEILD 126 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + ++L+ AK I F G+G S A DA KF R V D L +M+ DV+ Sbjct: 127 KCINLINNAKHIEFIGIGHSNLTAQDAKYKFLRIGKSVASHSDPHLFKMAASISDREDVI 186 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + IS TG T+ +++ Q A+ A IA+T+ T + + A + E+ Sbjct: 187 IGISQTGETREVIDSLQSAKVRGAKTIAITNNDKTEITKYADYVLLNGFNEELLETGSFS 246 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 R++QL +I++L G + K + +A+ Sbjct: 247 ERISQLFIIELLYLGVLSKNKDKAMELKDLTIKAV 281 >UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU Length = 291 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 126/291 (43%), Gaps = 8/291 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +++ +L+ S SE+ +A+ IL + ++ ++ S+ +A + S T+ R CR + Sbjct: 1 MSIMTQLEFELD-FSSSEKTIAKYILDNGEDILNLSVKELAKQTYTSPATIVRLCRKLGL 59 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ DFK+ + L VN DS +I ++ + +D Sbjct: 60 NGYGDFKIKYSAELQFDKKNKKRVDVNFPFGNTDSNSQIAYRIANLHQEAIEDTLNLVDF 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 +++ ++LL QA++I FG G+S D +K R V Q CS Sbjct: 120 KNLDKIINLLDQARRIYLFGNGNSLLAGFDFQHKMMRIGKMVEMRAHAGEQGFLSYTCSP 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTD-I 233 DV +LIS++G T +VELA+ ++ ++ +TS G L++ T + E Sbjct: 180 DDVAILISYSGETNEMVELAKFLKKMHVPLLGITSIGDNQLSKYCTYIMNTGSREKIFSK 239 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 P S+ + ++D++ + + + + K +N Sbjct: 240 IAPYSSKTSISYLLDLIFSCIFRLNYDHYINEKINRDKLFDHRHPYKSPIN 290 >UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3D9_THELT Length = 276 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I++ + +K E ++A+ ++ PD IH SI + E + + TV RFC+ + Sbjct: 4 DVQTIIKANQKQFTKKENELAQFVIDHPDEVIHMSITEIVDELRIGQGTVVRFCQKLGFS 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL--DKSAIN 119 GF FK+ LA+SL + + + E + ++ L ++ + Sbjct: 64 GFHPFKIALAKSLGRQE-------EASEGSKDMLAMVKEDHIKAIEETSKLLKLNEKVVY 116 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + + ++ +++ G+G+S A DA KF R V V Y D Q MS C++ D V Sbjct: 117 QCAEKISNCRRLYLLGVGASGVTALDAYYKFMRIGVDVKYMLDPHFQAMSLSGCNEKDCV 176 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 V S +G T +V++AQ+A++N A VIA+T +PL A + V E+ + Sbjct: 177 VAFSQSGSTAVVVDMAQIAKQNKACVIAVTGYNKSPLTFYADFVLLTAVRENPFQSGAIR 236 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 S++AQL V++VL L K + N+ R ++++ Sbjct: 237 SKIAQLHVLEVLFEQTKLLLADKAKQNVDRTARSVEK 273 >UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L9A2_9FIRM Length = 336 Score = 257 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 5/261 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L+ I Q L++S +K+A+ I A+ + SI+A+A + VSE T+ RFCR + Sbjct: 55 NILDLITEQYPTLTRSGKKLADYIFANTTETQYLSISALAENSGVSEATITRFCRKLGLS 114 Query: 62 GFPDFKLHLAQSLANGT----PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+ DFKL +A+S + DS+ K+ + + +L LD+ Sbjct: 115 GYNDFKLAIAKSDHVTDMGEPSGSPSTITSQDSLPDIFQKLLSANILSLTETFDLLDEKE 174 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 I+RAVDLL A + G GSS+ +A +A +F + ++ D +Q +S + D Sbjct: 175 ISRAVDLLYGAHHVYCLGNGSSSVMAMEAWARFSTASTRFIHIADSHMQMLSIALATPQD 234 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V++ S++G T+++ ++ +A + VI +T + A A + + E Sbjct: 235 VILFFSYSGATRDMEDIMNIAHKRKIPVILVTHFPKSQAAAFADVTLLCGYNESPLQSGS 294 Query: 237 MVSRLAQLTVIDVLATGFTLR 257 + +R+ Q+ +ID L GF L+ Sbjct: 295 IAARMGQMLIIDCLFHGFCLK 315 >UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment) n=3 Tax=Lactobacillus RepID=C2D3P4_LACBR Length = 281 Score = 256 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 143/278 (51%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + ++ ++ ++LS++ +K+A+ ++ +P A ++I +A S +V+R +++ Sbjct: 3 SPVQMLKQSFDNLSRTNKKIAKYVIDNPQAASEANIEDLAAVTETSTASVSRLVKTLGYS 62 Query: 62 GFPDFKLHLA-QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F +F L LA L + ++++ +D++ + KIF S+ L R +D++ R Sbjct: 63 NFREFTLSLAYTQLRPQNLPIFKDIDANDTLSTIADKIFTSSQRALQDTREGIDENEFAR 122 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 +V + +++ FFGLG S+ A D +KF R ++ Y D +Q M + + D + Sbjct: 123 SVLRIIHCRRLGFFGLGGSSVAALDGYHKFLRTSIDCFYYPDFDVQLMQAVKLGEDDCAI 182 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 ++SH+G+ + +++A+ + VIA+TS +PL + + E M S Sbjct: 183 VVSHSGKNRQTIKIAETLKRRKVPVIAITSYQDSPLVGHSDITFISSSDESNYRSEGMYS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 LAQLT+ID L T+R G D ++ V+ ++ +R Sbjct: 243 LLAQLTIIDTLFMMATVRMGPATEDTIRSVQNIIESTR 280 >UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPL3_9FUSO Length = 285 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 147/277 (53%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 NM I++ LSK E+ +A+ IL + + + + +IA +A V T+ F + + + Sbjct: 5 NMKFTIKTIYNDLSKKEKLIADYILKNINKSTNLTIADLAENIGVVNSTIFSFTKKLGFK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF +F+ L + N V+ ++++DS+ S K+F S + +L+ + +K + + A Sbjct: 65 GFREFRDSLLRDQFNSNINVHEKISKNDSITSIIEKVFNSNIKSLEDTKKIAEKKSFSTA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + +LTQ + FFG+G S+ +AHDA +KF R + + D LQ M + D + Sbjct: 125 LKILTQVDIVHFFGVGGSSVIAHDAYHKFLRSPLKCRFDSDFHLQLMQASLLTKNDCAFI 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G TK +E+A +A+E A +I LTS + LA++A + E + SR Sbjct: 185 ISHSGMTKESIEIADIAKERKAKIIVLTSYPLSILAKKADITFISTAEEIEYRSEALSSR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL+++D + L K + +L +++ + +++ Sbjct: 245 IAQLSILDTIFILVMLNNPTKTQISLNKIRTTIAKTK 281 >UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9G3_9ACTN Length = 285 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 2/280 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ KI+S L ++ E+ +A+ IL + +I +A + V++ T+ +F + M + Sbjct: 5 SVTAKIKSLLPSCAEKEQAIAQFILQHVRETSYMTIHELADKLGVADSTIFKFAQKMGYK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF DF+ L + V+ ++ DS+ + IF S++ +L + L++ + RA Sbjct: 65 GFRDFRNDLLTEAYDPEVSVHEHITTRDSLATIAATIFHSSVTSLHNTLALLNEDNLKRA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L+ A + FFG G S VA DA +KF R + + D +Q M DV ++ Sbjct: 125 LSLINNAHTLTFFGCGGSNIVAADAYHKFLRSPLHCQNAIDEHIQIMQASLLGAQDVAII 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G ++ +++A++ REN +I +TS TP+ R A + E + SR Sbjct: 185 ISHSGLSRTTLQIAEILRENRVPIIFITSYLNTPITRFADVVFISASEETGYRSESLASR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFR-DNLKRVKEALKESRFD 279 +AQL ++D L + K L ++ A+ ++ + Sbjct: 245 VAQLVILDTLFCAVMFKSDDKNVAQTLHNIRSAINRTKIE 284 >UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor) n=2 Tax=Bacillus RepID=Q9K6Z8_BACHD Length = 284 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 3/278 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L KI+ +L +E KVA +L P+ + +A +AN S+ ++ RFC+ + Sbjct: 6 LLAKIEQELASFPAAETKVANYVLKHPELVPTMTTKQLAEQANASQSSIVRFCKRLGLES 65 Query: 63 FPDFKLHLAQSLANGTPYVNRN--VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 FP KL LA+ L Y+N + DDS K+ LD ++++ A Sbjct: 66 FPKLKLALAKELTRKEAYINSASLLETDDSPPILFQKVSSLNQMALDMATKAMNEQAFTE 125 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+ + +AKKIAFFG+G S D KF R + S D + DVV+ Sbjct: 126 AVEQMVKAKKIAFFGVGGSFTSCIDGQYKFMRLGFHSLASGDYHQMIPFITMMDEQDVVI 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S +G TK ++++A A+E + +I +T S+ + L R+A +++ + E + S Sbjct: 186 CMSTSGNTKEVLDIADYAKERNVKLIGITASSRSALTRKAAVSLLIPDIEVQQRIGSIAS 245 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R +QL VID L R G+ D ++ +E R Sbjct: 246 RTSQLNVIDALYVSVFHRIGSDLLDAFDASRKKTEEKR 283 >UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=Oxalobacteraceae RepID=A6T0F7_JANMA Length = 286 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 110/274 (40%), Positives = 163/274 (59%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ I++Q + LSKSE+KVA +L P+ AI +I A+A +A VSEPTV RFCR++ G Sbjct: 2 LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + FKL LAQ LA + + +D K+ ++ TL +R+SLD +AI +A+ Sbjct: 62 WQAFKLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQAL 121 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +L +A I F+G G+S +A DA +KFFR VP V D + ++ GDVVV I Sbjct: 122 QVLGRANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAI 181 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S G + +L+ QLAR + A ++ L +GTPLA AT+ I +D+ TD Y P+ +RLA Sbjct: 182 SQRGSSLSLLRSVQLARSSGAAIVVLAPSGTPLAELATVLIPIDLHFHTDPYTPISARLA 241 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 L VID+LA G LR + R + ++AL++ Sbjct: 242 HLVVIDILAVGLALRLSPERRKKMLNAQKALQKF 275 >UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XRD4_9DEIN Length = 264 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 3/266 (1%) Query: 14 LSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQS 73 ++ + ++A+ +L + D I+ ++ +A A SE +V RFCR + +GF DFKL LA Sbjct: 1 MTPALERIAQYVLHNADQVIYQTVIEVADAAGSSEASVVRFCRDLGFQGFQDFKLALASD 60 Query: 74 LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAF 133 L + + S +S ++ +A LD R ++ + V+ + +A++I F Sbjct: 61 LVTSPVILPKQEKPT-SAQSTADYVYNTARQVLDETRRLMNVDLLEEVVERILKARRIDF 119 Query: 134 FGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVE 193 +G+G++ A D K R + D +S D+ IS +G + + V+ Sbjct: 120 YGVGNAGTTAQDFAQKLQRLGCAAIAYPDPHSAAVSAATLGPKDLAFGISVSGSSIDTVK 179 Query: 194 LAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLAT 252 + A+ A +A+T A +P+ R A + PE M ++++QL ++D L T Sbjct: 180 ALEQAKLAGAYTVAVTRGARSPITRFADAVLLTSAPESPLTRGSMGAKISQLMLLDFLFT 239 Query: 253 GFTLRRGAKFRDNLKRVKEALKESRF 278 LR + L + A+ + + Sbjct: 240 RTALRHPKGA-ELLSKTAAAVADRSY 264 >UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YX9_LACSS Length = 280 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 71/276 (25%), Positives = 136/276 (49%), Gaps = 2/276 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + ++S ++ S+ +++A+ I +I A VS T++RF + + Sbjct: 5 IDSLLRSYYDNFSEKYKQIADYIFQESQFNQRLTIQEFAANCGVSTATISRFAKILGFDN 64 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F FK+ L AN +P + +N +D+ + KIF S L L + + +AV Sbjct: 65 FQAFKMALLAKEANTSPLFH-EINANDTFTTMAEKIFSSNSNALKATWSLLTEEQLQKAV 123 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ +A ++ FGLG+S VA D +KF R ++P V++ D LQ M ++ D ++I Sbjct: 124 ALINRAHLLSLFGLGASGIVAQDGYHKFLRTSIPTVFNQDYHLQLMQATKLTNQDCAIII 183 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+G+ K+ +ELA++ +E +I +TS + LA+ + + E + + + Sbjct: 184 SHSGQNKDALELARILKERQVPLIVITSFGNSSLAKLGDITLLSISEETNYRAEALHALI 243 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 AQ+++ID L + G + + K ++ + +R Sbjct: 244 AQISLIDSLFMMVAVNNGQETEQSFKEIRAEIDRTR 279 >UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4M2_9CLOT Length = 282 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 138/279 (49%), Gaps = 2/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + I+++ LS S++ VA+ IL +PD + +++ +A VSE TV RF ++ Sbjct: 4 QIFSLIRTKYNTLSSSQKDVADYILTNPDKVMMNTLNEIAAACRVSETTVLRFLHKLNYN 63 Query: 62 GFPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + F+++L Q L+ + V +V D+ + KI S ++++ R +D +++ Sbjct: 64 SYQLFRINLTQELSKDNQETVYDDVGFQDTEDEIIDKIIHSTVSSITDSRQIIDPASVKA 123 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ + A++I G+G+S +A D +K + + V ++D + + +++ Sbjct: 124 VVEKIAGARRIVVAGVGASGFIAQDLYHKLIKLGLNAVCANDPHIMNILATGLDQNTILI 183 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 L SH+G ++ ++++A +A+E V A+TS + LA +A + E M S Sbjct: 184 LFSHSGESREVLDMAAIAKERRCQVCAVTSYAKSTLANQAGYLLCSSSRETMFRSDAMTS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+ Q+ +ID+L + G + + A+ +++ Sbjct: 244 RIVQMVIIDILYVSLVIALGDGILPQIHSSRLAVAKNKI 282 >UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU Length = 312 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 125/285 (43%), Gaps = 8/285 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L K++ ++ S SE+ +A IL + + ++ S + +A S T+ R C+ ++ Sbjct: 1 MSLLRKLEMAVD-FSTSEKLIATYILKNGPDVLNMSTSQLAKATYTSPATITRLCQKLEY 59 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +G+ DFK+ L+ L N N + D++ + I A +++ +++D Sbjct: 60 KGYNDFKIALSAQLQYTFDRNSETNPNFPFKKRDTIHTIKHSIATLAKDSINLTVNNIDN 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + + +L QAK I +G+ +A D K FR V + + Q + Sbjct: 120 DILAKIIIMLDQAKVIDIYGVSGPLRIASDFQYKMFRIGKNVQIAPMVNEQLFQAAQSNK 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIY 234 +LIS++G T ++ A+L + +IA+TS G + L++ + LD E Sbjct: 180 DHCAILISYSGETNEVIAAAELLKRRKVPMIAITSFGESRLSKLCDYVLFLDSRERIYSK 239 Query: 235 MPMV-SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + S ++ ++D++ + R + + + Sbjct: 240 VSTFGSTISIHIMLDIIYSCLFARHYDENLELKLETDHIIDHRHI 284 >UniRef50_Q184N2 Putative phosphosugar-binding transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q184N2_CLOD6 Length = 283 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 2/276 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ + K++ E L++ ++K+A+ IL + + S++ +A + S ++ RF R M Sbjct: 1 MSCILKLKQIYEDLTEVDKKIADYILNNTEAISKLSVSELASNSKTSTASIVRFSRKMGY 60 Query: 61 RGFPDFKLHLAQSL-ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF D K+ +A+ L Y + N D +++S KI + T++ R +K I Sbjct: 61 SGFGDLKIEIAKDLMGKENEYTYVDENYDCNIDSVINKITNKNIETINQTRLLNEKDIIK 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV+ + +AK + FG+G SA VA D K R N S D Q M N D+ Sbjct: 121 EAVEQIIKAKNVYIFGVGGSALVALDLQMKLLRINKQAFTSLDSHTQLMVSSNVDKEDIA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 + IS++G +K +++ + A+ VI +T L++ + L + + E + Sbjct: 181 IAISYSGESKEVIKSIENAKLKGCKVICITKYSDNHLSKISDLKLVVPNIEKRLREGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 SR+A LT+ID++ + L+ K L Sbjct: 241 SRIAMLTLIDIIYISIIQENLNEAEQKLQETKRILD 276 >UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EB66_BRASB Length = 270 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 1/270 (0%) Query: 10 QLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLH 69 L L R++AE+I A P+ +H SI +A +VSE T+ FCR + RGF + K+ Sbjct: 1 MLPELPPKARQIAELIAAQPEPFVHKSITEVAEACDVSEGTIVSFCRRVGVRGFQELKIM 60 Query: 70 LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAK 129 LA+ L + +++ D + T IF + A+L R L A+ A LL +A+ Sbjct: 61 LARDLIEPVRLIQEDLHRGDDPATVTDHIFAAHAASLQETRRLLSMEALAEATRLLREAQ 120 Query: 130 KIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTK 189 +I +G+GSSA +A D + + + D +Q +S G V +SH+G T Sbjct: 121 RIEIYGIGSSAPIAQDLSYRLLQLGLAANAIVDSHVQAVSAGMTGPGVATVTVSHSGSTV 180 Query: 190 NLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVID 248 V +LA+ A I +T G +PLA + + E M SR+AQL +ID Sbjct: 181 ETVLATRLAQAAGARTIGITRLGKSPLAAHCEVLLYTVANETRYRPEAMSSRVAQLAIID 240 Query: 249 VLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L + L + L+ L E R+ Sbjct: 241 TLVSCCALTDTERSVGRLQHAARILSEKRY 270 >UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C448 Length = 286 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 135/283 (47%), Gaps = 8/283 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L+ I L L++++RK+A+ IL +P+N ++ S +A +VS+ + +F + + Sbjct: 1 MTLLDIITYSLPRLAENQRKIAQFILENPENVLNLSSQQLAEILDVSQSAIVKFSQKVGV 60 Query: 61 RGFPDFKLHLAQSLANGT-------PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +G+P KL L++ + ++ + DD++ K+ ++ + Sbjct: 61 KGYPALKLALSEIIGRQQLKDGAPHSALHNRIAPDDNLMVVAQKLAMEKNHSITETTKLI 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D R V+ + Q++++ G+G S A D K + + + D +Q + + Sbjct: 121 DFKQFERIVERIDQSQRVQIVGIGGSGLTAKDLSYKLQKIGITTLVESDHHVQIAAALTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTD 232 + DV ++IS TGR K+++ A +AR+ A VIA+T +PL + A + ED Sbjct: 181 NTHDVQIVISFTGRRKDMLTAANIARKQGACVIAITRDCDSPLGQLADYVLESIAEEDEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR AQ T+ D++ RR AK + + + + + Sbjct: 241 RSSSISSRTAQNTLTDLIFMALLQRREAKAKSLVMNARVVINK 283 >UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus suis RepID=A4VXR0_STRSY Length = 275 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 4/278 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN + +E+L+ +E K+ + I + +I +A A VS T++R + M Sbjct: 1 MN-RNILNHSIENLTPTENKLLDYIEENIHRIETMNIYQLADNAGVSTATISRISKKMGY 59 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F K+ +A+S +N + DS++ + K+ S + L+ + Sbjct: 60 SNFNKLKIEIAKS--KYDDLLNAHFTPSDSIDDISTKLIHSITISNQQTVSFLNLEELEA 117 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV LL A +I FG+G+S V D K R +++ D +Q + +GD+ + Sbjct: 118 AVKLLQSASRIYLFGVGASGIVCSDFYYKLSRIGKTCIFAQDTHIQMANIATAGNGDLAI 177 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G TK +VE + A+EN I +T G LA A + + E + S Sbjct: 178 GISYSGMTKEVVEPLRFAKENGVSTITITGTGKNQLADLADITFRIPRHEHELRVGAITS 237 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R L + D+L + L++ K + + Sbjct: 238 RSNSLFLTDLLYLALIQDHKQEITAILEQTKHLTEVIK 275 >UniRef50_P26833 Uncharacterized HTH-type transcriptional regulator CPE0189 n=15 Tax=Clostridiales RepID=Y189_CLOPE Length = 279 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 141/276 (51%), Gaps = 3/276 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +LE++++ +KSE+ + E I + DN I+ SI+ +A E+ V E T+ RF + + Sbjct: 1 MGILEQLENPKFKATKSEKTLIEYIKSDLDNIIYKSISIIAKESGVGEATITRFTKKLGF 60 Query: 61 RGFPDFKLHLAQSLAN--GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF DFK+ LA+ ++N T +N +V+ D+SV K+ +S++ L+ +D + Sbjct: 61 NGFQDFKVTLAKEISNKKNTSIINLHVHRDESVTETANKMLKSSINILEQTVKQIDLDLM 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + DL+ AK++ F G+G S A D KF R V D + +D DV Sbjct: 121 CKCRDLIMNAKRVYFIGIGYSGIAATDINYKFMRIGFTTVPVTDSHTMVIMSSITNDDDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 +V IS++G TK +++ + A+EN +I LT + PL + + +T E + Sbjct: 181 IVAISNSGTTKEVIKTVKQAKENGTKIITLTEDSDNPLRKLSDYELTYTSAETIFETGSI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 S++ Q+ ++D+L T ++ + + A+ Sbjct: 241 SSKIPQIFLLDLLYTEVIKEMFSEAVEKKIKTTSAI 276 >UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC5_9ACTN Length = 283 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 12/273 (4%) Query: 15 SKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSL 74 S +ER V + A P + S+ +A S ++ RFC+ + G+ +F+ L L Sbjct: 17 SPAERNVIAYVSAHPHEVVGLSVRGLADVTFSSPSSILRFCKRLGFAGYKEFQRELIAEL 76 Query: 75 A---NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKI 131 A + +++ DDSVE GK+ +S + T++ +LD + + R L +A+ + Sbjct: 77 ALLGDKKDVALEDISMDDSVERIVGKVMKSNVRTIEATARTLDYTVLERCAARLKRARAV 136 Query: 132 AFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNL 191 FG+G+S VAHD K R + DD Q + N +GD+ + S++G T+ + Sbjct: 137 NLFGIGASRLVAHDLAQKLMRVDKECRLYDDWHDQLLCAKNMHEGDMAIAFSYSGLTQEV 196 Query: 192 VELAQLARENDAMVIALTSAG--TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDV 249 ++ A+ ++ V+A+T + LA A + + E M SR+AQL V+D Sbjct: 197 LDCTAEAQRHNCPVVAVTKVDGSSKLATMADAVLGVAASEPLVRSGAMASRMAQLMVVDA 256 Query: 250 LATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 L + + +K++ +KQ Sbjct: 257 LYAAYVASDYERAT-------HVIKQNYIEKQE 282 >UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C511 Length = 286 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 131/279 (46%), Gaps = 4/279 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN +I+ + + +E+ +AE IL + + + S A+ + N S + RF + + Sbjct: 9 MNAYIRIKEYNDSYTATEKLIAEYILEN--DILQDSAQALGEKTNTSAAAIIRFSKKIGF 66 Query: 61 RGFPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +GF D K++LAQS V+ +D++ + K M T+ ++ + Sbjct: 67 KGFSDLKMNLAQSTKEEKQQEVDLIFEPEDNISTLVEKGCRLNMNTVLKTYQLINIDTLE 126 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 ++DLL A I FG+G S+ + D K R V+Y+ D+ +Q + D Sbjct: 127 ESIDLLNNASTIYLFGVGGSSVIGLDIYQKLMRIGKKVIYNADLHVQMTFAQSMDQNDAA 186 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 ++IS++G T LV++A++ E VI++T P+++ +T ++ + E + Sbjct: 187 LIISYSGSTTGLVDVARVLHEKQIPVISITQINANPISKLSTYSLKVPSEEKALRIGAVS 246 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR++ + D+L G + + + NL K+ + + Sbjct: 247 SRISSFVITDLLYYGVFKKNFEEHKKNLIDSKDNVSILK 285 >UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNY6_HAHCH Length = 285 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 147/280 (52%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++ + L KSE+KVAE +L +P++ IH I +A EA VSEPT+ RFCR++ Sbjct: 6 DILSWLRQNRDTLRKSEQKVAECVLRNPNDVIHMRIVDLATEAGVSEPTIVRFCRTICFD 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F FK+ LAQ LA+ DS++ KIF ++L V + L I +A Sbjct: 66 SFQSFKVSLAQQLASMQRQTPFRARSGDSLQQLGAKIFSDVQSSLQQVFNQLAWDRIEQA 125 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++ + ++ FFG G+SAAVA DA KFFR D Q + DV++ Sbjct: 126 CAWISNSPRLYFFGYGASAAVAADAQQKFFRLKPSTHACPDPDTQMLIAGLVETNDVIIA 185 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 ISH+GRT NL++ AR + A V+A++ + LA A L I + V E+ D + P+ SRL Sbjct: 186 ISHSGRTNNLIQSCMQARASGAKVVAISPPQSALANIANLNIGVSVDENADAFTPLASRL 245 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 A L ++D +A+ + + L + K+ L R Sbjct: 246 AHLMILDTIASNLFQKLDEQHVQKLNQAKKNLSSLRLSPN 285 >UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n=3 Tax=Vibrionales RepID=A5L3V2_9GAMM Length = 282 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 135/282 (47%), Gaps = 6/282 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + K+++ L LS S+ VA +L P S +A VS+ T+ +F + + Sbjct: 1 MKGIAKVKALLPKLSPSDSLVARYVLDHPQQVKQLSSPELAKAVGVSQSTIVKFSQKIGY 60 Query: 61 RGFPDFKLHLAQSLAN----GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 +GF + K+ L QS + ++ + DS ++ K+ S +L+ + Sbjct: 61 KGFSEMKVKLYQSDMSYQPVSQRGIHGTITRKDSPDTVMEKLLASKTQSLERTVLLNEGE 120 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 ++ A DLL A KI G+G+S+ VA D K + V D +Q + + ++ Sbjct: 121 QLSNAADLLHLANKIQISGVGASSLVAKDFAYKLMKIGHAVHAEPDAHIQIANAASLTEN 180 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYM 235 DV+V IS++G+T+ +V++AQLAR A VI ++ + + L + A + + E+ Sbjct: 181 DVLVAISYSGKTREVVKVAQLARSKKAKVIVISQLSPSALDKYADIKLISAADENHIRSS 240 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + +R +Q + D+L T + + +++ K A+ E + Sbjct: 241 SITARDSQFYITDLLFIALTQ-QEEQADQLIEQSKSAVAEFK 281 >UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_LISW6 Length = 283 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I+ L L SE+K+ + +LA+P+ +SI +A +A+ S V RFC+S+ + Sbjct: 5 SIINRIEGILHDLPTSEKKIGQTVLANPEFTTTASIHKLAQKADASGAAVVRFCKSIGLQ 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FP+ K L+ LA ++ ++ + T K+ + M T++ LD++ + A Sbjct: 65 SFPELKRQLSLDLAQPQKIGYYDIEPNEDFHTITDKLVSNMMQTMNDTASQLDETKVLTA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 DLL A I +G+G+S VA D K+ R V+ + D + M+ V + Sbjct: 125 CDLLGDADTIYTYGVGASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKRKSVFIA 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLD-VPEDTDIYMPMVS 239 IS++G T +++L A+ ND VI+LT L +A LA+ PE S Sbjct: 185 ISNSGETSEVLQLVDQAKLNDVTVISLTRFGNNKLKEKADLALETSRAPEAEIRSTATSS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 R AQL V+D+L + + +K+ +EA R Sbjct: 245 RQAQLLVVDILFYYYASHHYDEMIQQIKQSREATNRFR 282 >UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9S0_9ACTN Length = 282 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 5/271 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++ + +S SE+++ IL P+ + +I +A VS T++R R + Sbjct: 5 SLLVLLKENKDRVSTSEQQIITYILKKPEAIVGVTIHELAQMTFVSAATISRLLRKLSLG 64 Query: 62 GFPDFKLHLAQSLANGTPYVN---RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ +F+ +L LA+ ++N DS + KI + ++ + I Sbjct: 65 GYKEFQQYLIYELASMKTSRQSSIEDINPKDSTKQIMFKIMRKTIESITLTEKLNNPKTI 124 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + +L+ A+ I FG+GSS A D KF R N+ S D +Q ++ N SDGDV Sbjct: 125 DSCAELIHNARHITIFGMGSSLLSAQDLQYKFLRANIDCTLSADWHMQLIAANNMSDGDV 184 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTP-LAREATLAITLDVPEDTDIYMP 236 + S++G T + A+++ VIA+T S + L R A + + + E Sbjct: 185 AIAFSYSGVTPETLRCVHAAQDHGGKVIAITRSVNSTELVRHADIVLYVASTEPLLRSSA 244 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLK 267 SR+ QL ++D L + + + ++ Sbjct: 245 GTSRITQLMIVDTLFSTLVNKHYDVYATAIE 275 >UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteraceae RepID=B9NXN7_9RHOB Length = 320 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 150/289 (51%), Gaps = 2/289 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ + + L+ E+KVA+ + + +I +A +VS+PTV RFCRS+ Sbjct: 32 VDLIPALHNSQTKLAVQEQKVADYVKDHLNEISSMTIGNLAERCSVSKPTVVRFCRSLGC 91 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNV-NEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF DFKL LAQ++A Y+ RN +E S ++ + ATLD +R +D + Sbjct: 92 EGFRDFKLRLAQNVAVSAQYLYRNAGDESSDANSAIDQVLGALFATLDVMRGQIDTERLE 151 Query: 120 RAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 A D ++I F G+G S+ VA +A N+FFR +P + +D + +M DV Sbjct: 152 EARDACLDRRQILFAGIGGGSSLVAQEASNRFFRLGIPSFFVNDSYVLQMRAAALGLEDV 211 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 + L+S +G +V A++A A I++T T L+ + +A+ ++PED+DIY P Sbjct: 212 LFLVSASGEADAIVSAAEVANGYGATTISITKPNTRLSDISKIALLTELPEDSDIYKPTA 271 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 SR A L ++D LA + ++NL+R++ +L L D Sbjct: 272 SRYAHLAIVDALAMTVAQEMTDETKENLRRIRASLTAYHGRTGPQPLGD 320 >UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=1 Tax=Listeria grayi DSM 20601 RepID=C2C2H3_LISGR Length = 282 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 3/278 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I++ + L KSE+KVAE++L P A SSI ++A A+ S + RFC+S+ + Sbjct: 5 SILNRIETLFKDLPKSEKKVAEMVLQDPAFASASSIHSLAKRADTSAAAIVRFCKSLGLK 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 FPDFK L L++ + ED+S + + K+ + TL+ + ++ I Sbjct: 65 SFPDFKRQLYSELSSPVASGYYDFEEDESFDGISQKLLANYFQTLNDTAGQISEAKIRTV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L +A I +G+G+S VA D K+ R VV S D + M V Sbjct: 125 SEQLEKADTIYTYGVGASWLVAQDIAQKWLRAGKQVVISQDEHVLAM-AFAARKSGVFFA 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLD-VPEDTDIYMPMVS 239 +S++G T +++ELA+ A++N+ VI LT G + L +A + PE S Sbjct: 184 VSNSGETTSVIELAEQAKQNNLTVIGLTRFGPSKLKAKADFLLETSRAPEAKFRSTATSS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + AQ +IDVL + R + + ++ ++A R Sbjct: 244 KQAQFFIIDVLYYHYVSRHYDQMIEQIRESRQATDRFR 281 >UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=Bacillales RepID=C4KZ09_EXISA Length = 301 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 3/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L KI E ++ E+K+A+ IL+ + + +A + +VSE ++ RF R + Sbjct: 22 SLLTKIDLAKEDMTAVEKKIADYILSHSTLIPNMTTKELAQKTDVSEASIVRFARVVGID 81 Query: 62 GFPDFKLHLAQSLANGTPYVN--RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 F FKL L + LA + + + D+ K+ A ++ ++DK + Sbjct: 82 SFKAFKLALVKDLAVTETTLTDFNVLQQKDTPYDSFQKVIHVNKAAIEACAEAMDKRELE 141 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AVDL +A ++ F+G+G S+ A DA KF + S D + DV Sbjct: 142 HAVDLFARASRVIFYGVGGSSTAAIDAQYKFTKLGYAATTSPDFHYMLSLIPHLGKSDVF 201 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 V IS +GRTK+++EL + A++ VIA+T+ +PL REA + + E + Sbjct: 202 VAISTSGRTKDVLELVRFAKKKRVPVIAITNLDKSPLYREADVRLCTPNVESDFRIASIA 261 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR+ QLT+ID L G R+G D ++ + + R Sbjct: 262 SRMTQLTIIDTLYMGLLHRKGEGLIDRYAEARDEMVKLR 300 >UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I531_9CLOT Length = 284 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 136/276 (49%), Gaps = 6/276 (2%) Query: 11 LEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHL 70 L+K+E K+ + I +++I+ ++ +A V E TV RFCR + R F +FK+ + Sbjct: 9 RSELTKAENKICDYIEEYMNSSIYMTVTEIANNCGVGEATVTRFCRKLGFRSFLEFKMTM 68 Query: 71 AQSLAN-----GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 AQ N + V+E+DS+ + K +E + +L+ +D S I D+L Sbjct: 69 AQEFKNSGYDNEDIIESEVVSENDSLGEFVKKFYEINVNSLEETLKKIDYSMIEEISDIL 128 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 +AK+I+F G+G S +A DA KF + + D M +GDV+ +IS++ Sbjct: 129 VKAKRISFTGVGHSGIIAEDAYYKFMKIGLICNCYRDSHTLVMMASLMKEGDVLFIISNS 188 Query: 186 GRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T+ + A++AREN+ VI++T + + LAR + + E R++Q Sbjct: 189 GNTEEINIAAEIARENNVKVISITENLLSKLARVSDYVLNYTDQEIKIDMESFGIRISQN 248 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +ID++ T + + + ++A+++ + Sbjct: 249 FLIDLICTNVIRKNKEIAVVSKSKTEKAIEKLNIKR 284 >UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JBJ8_FRASC Length = 299 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 126/276 (45%), Gaps = 1/276 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 + +++ L L+ S RK+ ++IL P +H ++ +A S TV RFC+ + +GF Sbjct: 24 IAHLRACLPTLTPSGRKIGQLILDDPREIVHLTVTDLADRTGTSVATVVRFCQDLGLKGF 83 Query: 64 PDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 D K+ LA ++ V DS + KI S + L ++D++A RAVD Sbjct: 84 ADLKIRLAGEAIPPERGLHEAVTHADSPATILEKILHSTESALSETTRTVDRAAFTRAVD 143 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L A ++ G G+SA +A DA +F + D +Q ++ + IS Sbjct: 144 ALQCADRVLLIGAGTSAPLAQDAAYRFRTLGLLAEAPADAHVQHVAARLLPPASACLAIS 203 Query: 184 HTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 HTG+T+ + A AR A IALTS +PL R A +A+ E M SR+ Sbjct: 204 HTGQTRETLAGAAAARAAGATTIALTSFFRSPLTRLADVALVAGSSETNYRVEAMSSRII 263 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 TV+D L L + + + + E L E R Sbjct: 264 HATVLDALFVAVHLAQPDRAQKAQELTAEVLTEHRI 299 >UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDH7_9FIRM Length = 281 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 1/276 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N E +Q L+KS R VAE ++ A + SI+++A E V+E TV RFCR++ Sbjct: 4 NFWELLQQHQGDLTKSGRTVAEYLVQHAAEAQYLSISSLARECQVAEATVFRFCRALGFE 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ + ++ LAQ+ A G + D + M ++ +++L A+++A Sbjct: 64 GYHEMRIALAQANATGVLVNQQEPAPDADTATLCEHASALFMTAINGTQNALSPQAVDQA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V LL A+++ G G S A A + +F D +Q M+ ++ DVV+ Sbjct: 124 VALLHSARQVFCMGQGGSMAAAKEICARFACITNKFRAVADSHMQVMAASLMTEQDVVLF 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S++G T++L+E + A+ N A +I +T +P A+ A + + E + + Sbjct: 184 VSYSGATRDLMETLRTAKANGAKIILITHYEDSPGAKLADIVLLCGAQESPLDSGSIPIK 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +A L V +VL + L + +R EAL Sbjct: 244 VAVLYVAEVLVLRYILDDKPGSTEAQERTTEALAVK 279 >UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NHI8_9LACT Length = 281 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 129/279 (46%), Gaps = 4/279 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L KI+S + ++++R +AE + + + S+ + S RF + M Sbjct: 1 MSVLYKIKSSMSAFTETDRSIAEFVFVNRQVVLESNAKELGDMTKTSAAAWVRFSKKMGY 60 Query: 61 RGFPDFKLHLAQSLAN--GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G P FK+ LA+ + + +N DS+ K + LD A+ Sbjct: 61 KGLPAFKVALAKETQSYTNEDDIETFLNPQDSLMGLLQKTENMLTQNIRETFSLLDYHAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +A++ + +AK + G+G S+ V D +K R + V+Y D+ DV Sbjct: 121 EKAIEFIHEAKTVFLLGVGGSSIVCLDFYHKMTRIHQNVMYDRDLHTLMPRIAQLDKNDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT--SAGTPLAREATLAITLDVPEDTDIYMP 236 V++IS+ G T+++ +A++A+ A ++ +T + + L+ + + + + V E Sbjct: 181 VLVISYNGETESVNSIAKVAKTMGARIVGVTKYNLKSTLSTLSDIRLFVPVEEKEIRLGS 240 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR + LT+ D+L G +D L R ++ +KE Sbjct: 241 ITSRNSLLTITDLLYYGIAKTDFNVTKDLLVRTRQFIKE 279 >UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU66_9CLOT Length = 285 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 128/281 (45%), Gaps = 4/281 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+S + L++ E+KVA+ +L P + +I ++ V + TV RFCRSM+ Sbjct: 5 NLLISIRSCYDRLTRLEKKVADYVLQHPQEVVKMTINELSNSCGVGDTTVFRFCRSMNVG 64 Query: 62 GFPDFKLHLAQSLANGT---PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ DFKL LA S N+ + + ++ ++ SLD AI Sbjct: 65 GYQDFKLALALSSNVNDMLDSKGEFNLAQSHDLHELAQQVSGVFTDAVNETLSSLDYDAI 124 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +R V+ + A+ + FG G+S A N+ R + Y+ D+ +Q S + V Sbjct: 125 SRTVEAILNARSVHLFGFGNSGVSALMMQNRMMRILPNIFYTSDVHMQLTSAATMQEDSV 184 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 ++ ++G TK+ + +AQ+ E A + +T TP A A + + E + Sbjct: 185 AIIFCNSGITKDSIRIAQMTHEAGAFTVFITKFMQTPAAPYADVLLCSGATEGPIQGGSI 244 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +Q+ ++ +L + R + ++N + A+ E + Sbjct: 245 SGVASQMYIVMLLYSELFRRMETRAQENKIKAAHAIAEKKL 285 >UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=Gammaproteobacteria RepID=C4L7F8_TOLAT Length = 292 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 77/274 (28%), Positives = 133/274 (48%), Gaps = 1/274 (0%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 KI+ L LS +ER++AE +LA + +SI ++A + VSEP + + + + GF Sbjct: 13 AKIRMALPGLSNTERQIAEWLLAKGNVESKTSIKSVAEQLEVSEPLIVKLSKKLGFAGFR 72 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 + + L + L++ + + DSVES K+F +++ + R D I A L Sbjct: 73 ELRQALVEYLSSLPIDSEQEIEPTDSVESVLNKVFANSIQAMKEARSVADPILIANAAQL 132 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + AK + FG+G SAAV D +K R + D + M + DV+V+IS Sbjct: 133 IFNAKNVVIFGVGGSAAVCQDFEHKLLRIGILSRAYSDFHMMLMVSSQLDENDVIVVISQ 192 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G T+ L++ + A++ + VI +T+ + LA+ A AI + V+R+ Q Sbjct: 193 SGDTRELLKAVENAKQRHSRVICITNNDTSALAQLADYAIFSPAKGGILLGQNAVARIVQ 252 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L ++DVL L+ K R+ L R ++ Sbjct: 253 LNLLDVLFIAILLQDHDKNREKLTRGSRVVRHLH 286 >UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM70_9ACTN Length = 283 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 132/277 (47%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + ++++ LS ER++AE +LA P A +I+ +A +++ TV +F + + Sbjct: 5 TIRVRVRALESSLSDKERQLAEFLLADPHKASKMTISQIAQTLGMADSTVFKFTQKLGFE 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF DF+ LA + ++ ++ + + +FES++ +L + + I A Sbjct: 65 GFRDFRGELAAEGFDPEVSIHEHITHKSTPKQMAETVFESSIRSLTDTKELFSEQDIIHA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L+ ++ F+G+G S+ VA DA +KF R V Y D LQ M + D +L Sbjct: 125 AKLIEDCYQLTFYGMGGSSVVAADAYHKFLRTPKRVAYDADFHLQLMRASRSNGDDCALL 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH+GR +++A+ RE A I +T + +PL A + E + SR Sbjct: 185 VSHSGRCIQTIQIAEKLREVGASTIVITSNPSSPLTALADACLVTIAEETAYRSESLASR 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++QL ++D L T +LK V+E + +R Sbjct: 245 ISQLALVDALYTIVMFSDENAASRSLKEVREVISATR 281 >UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q61_LACBA Length = 286 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 143/282 (50%), Gaps = 4/282 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + + KI+ + LS++E+KVA++ L +P +I +A VS T++RF + MD Sbjct: 4 STIGKIRGTYDQLSRTEKKVAQMALNTPAVVSEMTIKELASATGVSTATISRFVKRMDYA 63 Query: 62 GFPDFKLHLAQ---SLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + +F + LA + E DS+ + K F +++L+ +L + + Sbjct: 64 NYREFTMALAHLAIEDGGEHQSSFPELAEGDSLATIANKTFHYTISSLEATNEALSEKDL 123 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RAV L A+K+ FFGLG S+ A D +KF R + V Y D +Q M SD D Sbjct: 124 ARAVLKLINAEKVTFFGLGGSSIAALDGYHKFLRTALSVTYYPDFDIQLMQAARLSDQDC 183 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 V+ISH+GR +++ + + ND +IA+TS G+PLA+ A + E M Sbjct: 184 AVVISHSGRNSETLQVVEELQRNDVSIIAITSYSGSPLAQAADVTFLSLTDEVNYRSEGM 243 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 S ++QL ++D L LR ++ + + +V + ++++R D Sbjct: 244 YSLISQLAILDTLFMMTVLRVSSRTGNVMTKVHDVIEQTRHD 285 >UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulator TM_0326 n=7 Tax=Thermotogaceae RepID=Y326_THEMA Length = 280 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 155/281 (55%), Gaps = 4/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANV-SEPTVNRFCRSMD 59 M+++++I+ + + + +E+K+A+ IL+ P I SSI+ ++ +A V SE +V +F + + Sbjct: 1 MDVIQRIKEKYDEFTNAEKKIADTILSDPKGIIESSISDLSEKAGVKSEASVVKFYKKLG 60 Query: 60 TRGFPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F FK+ LAQS++ V +V+ +D ++ T KIF++ + + + LD +I Sbjct: 61 LNSFQQFKVLLAQSISRAPLEIVYEDVSSEDDTKTITEKIFKATVRAILDTLNWLDIDSI 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 R VDL A++I F G +SAAVA DA +KF R ++S+D + S D+ Sbjct: 121 ERTVDLFKNAQRIIFIGFAASAAVAFDAFHKFTRIGKNCLFSNDEHIIAAILATASPSDL 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 +V ISHTG T ++V A+ A+E V+ +T + + LA+ + + + + E M Sbjct: 181 LVAISHTGETISVVNFAKKAKEMKMPVVTITGNRKSTLAKYSDVVLATNTKETKIRTDAM 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+ QL ++D + T R + +NL + + A+ E ++ Sbjct: 241 TSRIVQLVILDTIYTLLAARDP-RAIENLNKSRLAVSELKY 280 >UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIB3_RHOER Length = 291 Score = 247 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 122/281 (43%), Gaps = 5/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++L +I++ L LS +E ++AE+I A P A ++ +A A+ S TV R + + Sbjct: 11 VDLLARIRASLSSLSPAELRIAEIIEADPSLASTLTVNDLAERASTSTATVVRTAKRLGF 70 Query: 61 RGFPDFKLHLAQ---SLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+P +L LA S T + ++ DS K+ E L D +A Sbjct: 71 EGYPQLRLALAAISGSGTENTIPLGVDIVAADSAGEVMAKLAEFESEQLKGTAQLTDPAA 130 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + V + A+++ +G+G+S VA D K R +V D +S D Sbjct: 131 LEEVVSRIRSARRVEVYGIGASGIVAQDLTLKLSRIDVNCRVHLDRDAAMVSASLLGPDD 190 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 + V ISH+G T ++VE LAR A A+T A + LA ++ + E Sbjct: 191 IAVGISHSGETSDVVEPLALARRTGASTAAITGGARSTLAVQSHHVLLTAGREFGFRSAA 250 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR QL V+D + L+R +A+ R Sbjct: 251 MASRTGQLLVVDTIFAMVAHSLP-SALSALQRSHDAIASKR 290 >UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family protein n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A71F3 Length = 300 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 153/279 (54%), Gaps = 1/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I ++L L+ ++R VA+V L P+ A+ + + +A+ A VSEPTV RFCR++ Sbjct: 11 DLFSLIHARLPDLAAAQRLVAKVFLDKPEWAMQAHVNEIAVFAGVSEPTVVRFCRALGFH 70 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFKL +AQ +A G+ ++RNV DS++ GK+ S+ L + L + I RA Sbjct: 71 GLRDFKLRVAQQVALGSVALHRNVTAVDSIDEIVGKVLRSSADILLDIERQLPREQIKRA 130 Query: 122 VDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L A ++ +G+G +S VA DA + FRF + D +Q S S GD V+ Sbjct: 131 ISALGSAHRVDCYGVGTTSGFVAADAQARLFRFGIQAQTYTDANMQMFSAATLSPGDGVI 190 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH GR L+E ++ARE A+VI + GTPLA E + +T +P + Y+ + Sbjct: 191 AVSHFGRMPFLLEAVRVARERGAVVIGICEPGTPLAGECDIPLTFALPASVNAYIGSDAC 250 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 +A L +ID+L G RGA + L+R++ L D Sbjct: 251 IAHLAIIDILIVGVAFERGAAGIEQLRRLQNVLSPHGLD 289 >UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=Alphaproteobacteria RepID=C6B6F5_RHILS Length = 287 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 2/288 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ +Q LS SE ++AE+I+ + A+++SI +A A VS PTV RFCR + Sbjct: 1 MDIFSTLQEDKGRLSPSESRIAEIIVNDFEFAVNASIIELAERAKVSPPTVTRFCRRLGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFK+ LA++ G Y+ D I A L + SLD +AI Sbjct: 61 ESFSDFKVQLARTAHIGVRYLKPESKSTD-PADVAQDIITKAQNALFLLHRSLDLAAIEA 119 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 AV + +A I FG G +S+ +A + N+ FR + + S D +Q M GDV+ Sbjct: 120 AVSHIAKADMIYAFGSGGNSSMIADELQNRLFRLGLRITASSDHSMQLMMAAAARPGDVL 179 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +GR LV +LAR+ IALT +P+A+ A + + +D+PE +IY P + Sbjct: 180 IGSSFSGRNMELVRAFELARQTKVKTIALTQTDSPVAKAAEIVVPIDLPEGHNIYRPTST 239 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R+A + ID+L++ K L+R+K+ L R L D Sbjct: 240 RIAYIATIDILSSLVAYAVQPKATTTLRRIKQQLVIHRDGDDRQLLGD 287 >UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=Pediococcus RepID=Q03HR4_PEDPA Length = 270 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 129/279 (46%), Gaps = 11/279 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+++ ++ + LS+ ERK+A ++ P + +I ++ +A VS TV RF + M Sbjct: 1 MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F FKL LA++ +N + E+ ++ + + +++ +N+ Sbjct: 61 PDFSQFKLGLAEATSN--------ITENVDNAPLPDQVTDFYNQMITGTWKRINQKTLNQ 112 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 L+ A ++ FGLGSS A + + R + D +S D+++ Sbjct: 113 VAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYISSSIMQKDDLLI 172 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 ++S +G++ + E +A+++ V+++T+ +PLA + +++ E D + S Sbjct: 173 VLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINS 232 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +L + +ID+L+T ++ ++ A+ + Sbjct: 233 QLGVVYIIDILSTMLLQ--NETYKARYQQTVAAILNRKM 269 >UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=Q7MD38_VIBVY Length = 278 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 7/273 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++S +E SK R VA+ IL + + +I +A SE TV R CR M + Sbjct: 6 NLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ DF++ LA L+ ++ +SA+ +L +D+ ++ R Sbjct: 66 GYSDFRMALAVDLSQTESRQQNHIE-----GDICDVSAQSAVDSLQDTAKLIDRKSLARI 120 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ + QA+ I G+G+S+ V + R + +D L MS S GD+ Sbjct: 121 VERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFA 180 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G TK ++ A LA + D V++LT+ +PL+ +T + PE S+ Sbjct: 181 VSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASK 240 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 + L ++DVL +++D+++ E + Sbjct: 241 VGALLLVDVLVNSLLES-YPEYKDSVQETAEVV 272 >UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=Roseobacter sp. GAI101 RepID=B7RLA4_9RHOB Length = 317 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ HL+ E+KVA + A ++ +IA +A +VS PTV RFCR++ Sbjct: 30 DVISALRRHDGHLATQEQKVANYVKAHLEDISAMTIAELAGHCDVSTPTVIRFCRTLGCD 89 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNED-DSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF +FKL LAQ+LA Y++ + + ++ +I A+ + +R +D ++R Sbjct: 90 GFREFKLRLAQNLAVSMQYLSADPQPEPADGDTAINQILGGIYASANVMRRQIDPEVLDR 149 Query: 121 AVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A L + + + F G+G S+ V+ +A N+FFR +P + D + +M GDV+ Sbjct: 150 AKSALLKTRHLLFAGIGGGSSNVSQEAANRFFRLGIPSFSTSDSYILQMRAATLQAGDVL 209 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 LIS +G +V A++A A I +T +GT LA + I +D+PED DI+ P S Sbjct: 210 FLISASGEADAIVGAAEIAGGYGATTICITKSGTRLANVCNIPILIDLPEDRDIHKPTAS 269 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R + ++D LA + +NL+R++ +L L D Sbjct: 270 RYIHMIIVDALAMSVAQDLAHETTENLRRIRASLTAYHGRTGPQPLGD 317 >UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=Bifidobacterium RepID=B7GUA9_BIFLI Length = 289 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 5/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 + + E+I L +ER VA+ I + A ++ MA A+VS+PTV RF R + Sbjct: 5 VGIRERIDHVYPSLRPAERAVAQYIRDHIEEAADLTVGQMADIAHVSQPTVIRFARKLGF 64 Query: 61 RGFPDFKLHL----AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+ + + L A+ P ++N D + K + A A +D + +LD Sbjct: 65 GGYRELRYVLRHPAAEHKVTFNPLDGFDLNPWDGEDEIPSKAADGAKALIDELHSALDPK 124 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 A +AV LL +++ I FG+ +S A D K + + D LQ++ + + G Sbjct: 125 AYRKAVALLAESEFIDIFGVENSLTPAMDLFTKLGYLGLTCRLNTDAYLQQIGAGHLTHG 184 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 V V SH+G + + V+ +LA+ + A IA+T+A G PLA A + + T Sbjct: 185 AVAVAFSHSGSSADTVKALRLAKSHGAKTIAITNAIGAPLASWADVTLLTGRDSHTIYGN 244 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + S +A ++D+L G L +F L +++ Sbjct: 245 AIFSCVADTALVDMLYMGVILSDYGRFSTALDESGRMIRDR 285 >UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH25_PETMO Length = 283 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 129/274 (47%), Gaps = 4/274 (1%) Query: 7 IQSQLEHLSKSERKVAEVILA-SPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 + S++ +KSE+KVAE IL ++ +I +A + SE T+ RF + F D Sbjct: 8 LNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGFETFQD 67 Query: 66 FKLHLAQSLANGTPYVNRNVN--EDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 FKL LA +++ ++DS + K+ ++ +++ LD + +A + Sbjct: 68 FKLTLALDNNEDIFEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDINNFLQAAN 127 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 + AK+I +G+GSS+AVA K R P +D +Q +S + GD+ + IS Sbjct: 128 FIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLNFGDLAIGIS 187 Query: 184 HTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 +G TK+ V+ +A+++ A I+LT A +P+ + + + + + E+ S L Sbjct: 188 QSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTSAGRSILV 247 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 Q+ +++L+ K K A+ Sbjct: 248 QIFAVEILSGLLYSIEYEKALTTGKDTARAVVNK 281 >UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=22 Tax=Enterococcus faecalis RepID=C2JLW7_ENTFA Length = 290 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ IQ +L+ L KSERK+AE IL + + I + +A +A S + RFC SMD Sbjct: 12 NIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSMDVN 71 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + KL L+ +L + V + +S K+ + ++ +L+ A+N A Sbjct: 72 GFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAVNEA 131 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VDLL + + I +GLG+S+ VA D KF R V + D L + V ++ Sbjct: 132 VDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSVFIV 191 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPED-TDIYMPMVS 239 IS++G K LA LA++ ++++T + + ++ + + ED VS Sbjct: 192 ISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDVPLRSAATVS 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQL V+DVL + + + + ++ ++ ++ + Sbjct: 252 LVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLK 289 >UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteobacteria RepID=B7LQI9_ESCF3 Length = 301 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 6/287 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ I + L+ +E+++A+ IL A+ IA +A S+ +V RF R++ + Sbjct: 20 DIISCITERFMALTATEKRIAQFILDDVPAAVELPIAELARLTQTSQASVTRFARALGCK 79 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + K+ LAQSLA G ++ +V + D V+ I ++ L+ R SLD +AI++A Sbjct: 80 DVRELKVKLAQSLAIGQRFI-LDVPDLDGVQGIYESI----ISVLETHRRSLDMNAISQA 134 Query: 122 VDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V L+QA++I G G S + + + FR +PVV +D ++ RM C DVV+ Sbjct: 135 VSWLSQARQILALGTGGGSTICSQEIQYRLFRLGLPVVSQNDALMMRMMCSAVMPQDVVI 194 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ++S G T ++E A +AR+ A VIA+T A TPLA + L + L V E I+ P SR Sbjct: 195 VLSLGGYTPEIIESAAIARQYGARVIAITPAQTPLAEQVDLVLPLLVQESDYIFKPTPSR 254 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 A L ++DVLAT + A+ +D L+R+K L R L D Sbjct: 255 YAMLAMVDVLATELAMANKAQAKDRLRRIKLVLDSHRGGANRQPLGD 301 >UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X566_COMTE Length = 282 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 161/281 (57%), Gaps = 5/281 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML+++ + LE L+ +E++V ++++ +P S + +A E VS+PTV RFC+ + G Sbjct: 1 MLDQVMATLETLTPAEKRVGKLVIENPRRFASMSTSEIASECFVSQPTVVRFCKGLGYGG 60 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 FK L ++G PYV+ +V+ D+ + K+ +S++ATL R + K +I RA Sbjct: 61 LTQFKQKLRGDRSDGVPYVHSSVDAGDTSFNVALKVVDSSIATLALFRTYVPKISIERAS 120 Query: 123 DLLTQA----KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + L A + ++F+G G S VA DA +F R +D Q ++ + +GDV Sbjct: 121 NTLAAAYSEQRSLSFYGSGHSGVVAQDAQLRFSRLGFNSTALNDGYSQVLNAASRKEGDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 VV +S +GRTK L+E +A+ A VIA+T +GTPLA ++ + D ED D Y+PM Sbjct: 181 VVALSCSGRTKELLESVDVAKRQGATVIAVTGSGTPLATMGSIHLATDHLEDIDRYLPMS 240 Query: 239 SRLAQLTVIDVLATGFTLRRG-AKFRDNLKRVKEALKESRF 278 SRL L VID++AT L+ G + +D L+R + L+ R+ Sbjct: 241 SRLLHLVVIDIVATAVALQIGCGRLQDQLERTQNHLRHRRY 281 >UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEV7_ACHLI Length = 281 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 7/282 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ + E LS +ER V + ++ + S+ +A A S +V R C+ + Sbjct: 1 MSVMLNMLKNKEALSMAERIVLDYLIENKTLLKDFSVEKIAEAAYTSPASVVRMCKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSV----ESYTGKIFESAMATLDHVRHSLDKS 116 GF DFK+ LAN + D + ++ K E+ + L+ + D+ Sbjct: 61 NGFKDFKIDFI--LANSKVEIPETSEYTDVILIKDQNNGKKAIENNIRALEETINLYDEK 118 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 +A L+ A+KI FG GSS V D K R N V + Q + ++ Sbjct: 119 TYTKAASLIMNARKILIFGKGSSFLVCKDLEMKLRRINKFCVAQGESHDQFVDASFINNK 178 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYM 235 DVV+ IS++G+TK ++ A LA+EN +I++T G+ LA + + + E Sbjct: 179 DVVIFISNSGKTKEIISSALLAKENKTPIISITRIGSSILADISDVVLYTSALESEFRSA 238 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR++Q++V+D L + L+ +K+ + Sbjct: 239 AMTSRISQMSVVDALYAKCAYTDIDRSIQALETTYRTIKKFK 280 >UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enterococcus RepID=C0X1P6_ENTFA Length = 285 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 137/280 (48%), Gaps = 9/280 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN + I L+KSERKVA+ IL S ++ I+S++ + +ANV + T+ RFC+ + Sbjct: 14 MNYIYLINEHYPLLTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGF 73 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ +A+ + + D ++ +S + L +++ + + Sbjct: 74 SGFSDLKIEIAKEDFSKKKEQPSSGKYHD-------EVAKSLIEVLQSTSCLINEEKLTK 126 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A+ L+ QA + FG+GSS + D + F R + D Q +D D+V+ Sbjct: 127 AIQLINQASSLYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVI 186 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +G+TK+ + ++A+ N A ++A+T+ +P+ + A L + + E+ + Sbjct: 187 IFSLSGKTKDTYDSLKIAKNNGAKILAITNYIHSPIGKSADLVLQTAI-EEFLNGGSLAG 245 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 +++QL + D+L + D ++V ++ + R + Sbjct: 246 KISQLYICDLLVHEYEQNNKINSLDLREKVLRSIIDKRIE 285 >UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus crispatus MV-3A-US RepID=D0DKU0_9LACO Length = 284 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 135/284 (47%), Gaps = 3/284 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+ ++I L KS R +A+ +L +P ++ + + N S +V RFC+ ++ Sbjct: 1 MNVRDRILENYTELKKSSRIIADAVLENPKILLNKNAKEIGNYTNTSAASVIRFCKQLNY 60 Query: 61 RGFPDFKLHLAQSL--ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G DF++ LAQS + ++ V +DD + K+ S + + ++D + Sbjct: 61 KGLKDFQIDLAQSTVKQSQLKPIDMIVTKDDKADEVMTKLRVSLSQNFEDLSKTIDIKDL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +AV L+ +++ + G+G+S+ A D K R V Y+DD+ + + DV Sbjct: 121 QKAVSLIKKSRAVYIAGIGASSFSAKDLFYKLIRSGKTVFYNDDVHIALERIYYSTPKDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 ++ S++G T+ L+ + A++N ++A+T +PL++ A + + L E + Sbjct: 181 MICFSYSGLTQELLLAVKQAKKNKTPIVAVTRKSESPLSKLADINLKLPDHESLMRVGAI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 S AQ+ + +VL + + ++ + L++ + Sbjct: 241 NSTFAQMFISNVLYLCSISSDLGEVKQEMEATGKLLEKLKERND 284 >UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales RepID=D1PSB4_9FIRM Length = 282 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 1/276 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N E ++S+ L++S R+VA+ + + A + SI+++A E V+E T+ RFCRS+ Sbjct: 5 NFWELLRSRYSELTRSGRRVADYLTRHAEEAQYLSISSLAAECGVAEATIFRFCRSLGFD 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ + K+ LAQ+ A T + + A+ ++ R L+ AI+ A Sbjct: 65 GYNEMKISLAQANAIPTAAGADKLEPGADTATLCTHASAVALEAINGTRSVLNPEAIDAA 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 LL +A+++ FG G S +A+D +F + + D +Q ++ DVV+ Sbjct: 125 ATLLQRARQVFCFGQGGSQILANDIWARFATVSTKFRTAGDSHMQTIAASLMVPEDVVLF 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T++++E ++ + N A VI LT P A + + E + ++ Sbjct: 185 ISYSGSTRDMMETLRIVKGNGAKVILLTHYADAPGTALADVVLLCGAKESPLDGGSIAAK 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +A L V +VL FTL +R +AL Sbjct: 245 IAVLFVAEVLVLRFTLDNQELAAIARERTSKALAPK 280 >UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax=Enterobacteriaceae RepID=MURR_SALAR Length = 287 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 8/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L K+++ +++E+K+A +LA S MA + +S+ ++ +F + + Sbjct: 1 MLYLAKMRNAEGEFTENEQKIATFLLAHVGELKTVSSRNMAKQLEISQSSIVKFAQKLGA 60 Query: 61 RGFPDFKLHLAQSLA-------NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 GF + ++ L + + + +++ ++ +DS+E K+ + L+ + + Sbjct: 61 NGFTELRMALIEEHSVSREKKRDKAVHLHSSITSEDSLEMMARKLNREKIVALEETYNLM 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + ++L+++A I G+G SA V D K + V D +Q Sbjct: 121 DYERLEQVINLISKAPLIQITGVGGSALVGRDLSFKLMKIGFRVACEVDTHVQATIAQAL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTD 232 GDV + IS++G K +V A+ AR+ A VIA+TS A +PL R A + E Sbjct: 181 RQGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLADYTLDTVSGETEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 M +R AQ +V D+L G + ++R E + Sbjct: 241 RSSSMSTRTAQNSVTDLLFVGMVQLNDVESLRMIERSSELI 281 >UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6X6_RUMHA Length = 297 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 3/280 (1%) Query: 1 MNMLEKIQSQLE--HLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM 58 M E++ + + H K+ERK+A +L + D ++HS++ +A E VS+ ++ RFC+S+ Sbjct: 17 MGCRERLIDKRDGEHTKKTERKIAAYLLGNFDKSLHSTLLELADEIGVSDASIVRFCKSI 76 Query: 59 DTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF ++K++ A N +++ DD+ KIF + L+ + LD S + Sbjct: 77 GYTGFQEYKINAALQSVPEPRLYNPSLSVDDNPAEICDKIFAIESSALEQTKQELDISVM 136 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 N+ D+L +A++I G G SA A D +K + V +D LQ MS ++ DV Sbjct: 137 NKVADVLLKARRINLVGTGGSAISARDFQHKLLKIGVRAELQEDKDLQLMSASLLTEEDV 196 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 + ISH+G ++ E +LA++ +A +I LT + L +A + + + Sbjct: 197 LFAISHSGSNLHVAETIELAQKRNAKIITLTMKSKNILVEKADYPLYVVSEKTIFESESF 256 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +RLAQL ++D L + + +K + A ++ Sbjct: 257 SARLAQLAMLDCLVALMAFKNFDGSLEAMKATRIATSVNK 296 >UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XGH5_VIBHA Length = 296 Score = 242 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 131/273 (47%), Gaps = 1/273 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+ ++ L+++E+ +AE L +SI +A VS + + + + Sbjct: 19 QVIPNIRMRMPSLTRTEQSIAENFLKPHFMQKSTSIKEVAERLGVSTALIVKVSKKLGFS 78 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K L + + + + DDS E K+ ++++ L + + +D + ++ A Sbjct: 79 GFKQLKDALNAHHHSDSYAPSEQLQPDDSCEQIVTKVLQNSINALTEILNFVDANMVSAA 138 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + + A+ I + G S + D +K RF + D L MS S+ DVV++ Sbjct: 139 AEAIINARNIELYAAGGSNIICEDFQHKLLRFGIRASVPRDRHLMLMSASVLSEKDVVLV 198 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH+G+T +L++ +LA+++ A +I++T + L++ + + + + ++R Sbjct: 199 VSHSGQTVDLMDAVRLAKQSGATIISITNNFHAELSQLSDYPLYAPASPEPLLGKNGIAR 258 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 L +L +ID L + + +NL++ +A+ Sbjct: 259 LVKLAMIDSLYATIASKIPDQAEENLEKTTKAV 291 >UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillaceae RepID=Q03CI3_LACC3 Length = 280 Score = 242 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 144/277 (51%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L ++Q +LS E+K+A + A PD+A ++I+ ++ VS T++RF +++ Sbjct: 3 DFLVQLQIYKPNLSGQEKKLAAYLQAHPDHASQANISELSQLTGVSTATISRFAKALGYT 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F ++ LAQ+ + ++ DSV++ KIF S + L +LD A+ +A Sbjct: 63 NFQALRMALAQTSPEDDHALFAELSPKDSVDTLAQKIFTSNIDALRTTLANLDTDALTKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V +T A+ + FGLG+S VA D +KF R +PV Y+ D +Q M+ + D ++L Sbjct: 123 VKWITHAEHLGLFGLGASNLVALDGYHKFLRTAIPVAYAADYHMQLMAATHLGPRDAMIL 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 SH+G K+ + LA+LA++ +I +T S + L + A A E + + Sbjct: 183 TSHSGEDKDAIALAELAKKQQVPLIVITGSPTSRLVKMADAAFVAVAEESRYRTEALHAL 242 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +A+++++D L ++ ++ ++V+ + +R Sbjct: 243 IAEISIMDTLFMISAIKTDSQTAPLFRQVRATIDATR 279 >UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=Lactobacillus RepID=Q1WQV4_LACS1 Length = 274 Score = 242 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 131/281 (46%), Gaps = 8/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L I++ LS+ ERKVA +L +P +I +A +A VS T+ RF R M+ Sbjct: 1 MNLLNNIEAIFSTLSRQERKVALKVLQNPQEVQSMNITKLAKKAGVSNATITRFVRRMEC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFKL LA S A+ + V +S K++E L LD I+ Sbjct: 61 SDFHDFKLKLAISAAS-----SPEVPVSSESDSMGDKVYEFYQKVLQGTWKQLDTDTIHN 115 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V +T+A+++ +GLGSS A + + R + + D + + + DV++ Sbjct: 116 IVHAITKARRVYVYGLGSSGYTAQEFTQRLIRMGIAAFCTVDSHMMFIDSTIVNSDDVII 175 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T ++ LA++ +I++T +PL +T + + D + S Sbjct: 176 AISQSGNTDDVNVACSLAKQKGTKIISITGFYQSPLIELSTWSAVVKNSNFVDNTRFINS 235 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 +LA + VID++ + +++ + + E + + + K Sbjct: 236 QLAIVYVIDIITMELMEK--SEYSSTMNKTVELIMDRKLSK 274 >UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R285_BRAHW Length = 285 Score = 242 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 135/285 (47%), Gaps = 3/285 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN I+ + E SK+ +K++ IL++P I + ++ VS +V RF + + Sbjct: 1 MNAYLIIRDKYEDFSKAYKKISNYILSNPKEVIKLTALDISKNCGVSSASVVRFAKDLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN--VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G + K+ +A + N N ++ DD+VE KI ++ + + LDK A+ Sbjct: 61 KGLDELKISIASKNGDDDNKYNINTIISADDNVEELCNKIMLLIKSSNEDFFYQLDKEAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 +A L+ A+ I G+G+S+ A+D +K R N + +D L ++ DV Sbjct: 121 EKAFKLIRNARNIYMLGIGASSLSAYDLFHKLKRANFNAFFYEDAHLNAEFFNYLTEEDV 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 V+ S++GRT ++ ++A A +IA+T L++ A + IT+ E+ + Sbjct: 181 VIAFSYSGRTNEVIYPVKIASSKKASIIAVTRKKTNNLSKMADVLITVPNNEELTRMGAI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 S+ + L V D+L G + ++NL +E + D + Sbjct: 241 TSKYSSLIVSDLLYFGAIQKDFENIKENLINTSILTRELKLDDEE 285 >UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NYS8_9CLOT Length = 282 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 127/277 (45%), Gaps = 2/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + ++I S + L +E+KVA+ +++ P AI S++ +A + S+ T+ RFC+ + +G Sbjct: 7 VRDQIFSTYDSLYDAEKKVADYLISHPSEAIEMSVSELASHCDASQATIIRFCKKIGCKG 66 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F K+ LA V N + D ++ I S + + H+ + + V Sbjct: 67 FHQLKIKLAGEQRQQEEQVISNEIDIDQMDKSLNNIMISKVEEIKATFHNFNPEELREIV 126 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 DL+ A I F +G + +A D KF + + V S Q GDV I Sbjct: 127 DLIIHANLIEFAAMGDTIPIALDGSYKFNQLGLKAVSSTIWESQEAFSRTLRKGDVFFAI 186 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S +G +K LV++ ++ ++N IA+T+ +PLA + E +R+ Sbjct: 187 SASGASKRLVKMVEIVKDNGVTTIAITNQSKSPLAELCDHVLLTATREHIFHDQVSFTRM 246 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 A ++VID L + F +N+ + ++++ E + Sbjct: 247 AAMSVIDTLFLLLFSTKWDSF-ENVAQHEQSVAEEKL 282 >UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocaceae RepID=Q03YQ8_LEUMM Length = 284 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 140/279 (50%), Gaps = 3/279 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ ++++Q + + +E+K+ + I+ A ++I M+ + VS T++RF + + Sbjct: 4 NIIAQLRAQRKQYNTTEQKLIDFIINHVSEAREANIQEMSELSGVSTATISRFVKKIGLE 63 Query: 62 GFPDFKLHLAQSLANGTPYVN--RNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 F +F + LA + V+ + + D + K+F A L +L + ++ Sbjct: 64 SFREFSVSLASAATQMAASVDLFGEIADTDDTIAVAQKVFGGAENALAATVSNLTATQLD 123 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A L A+++ FFG+G S+ VA +A +KF R + V+ D +Q M + + D Sbjct: 124 EATLALISARRVGFFGIGGSSIVAFNAYHKFLRTPIDVIAHPDYDVQLMQAVKLNSNDTA 183 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 V+ISH+GR K+ + +A+ E +IA+TS +PLA+ A L + E M Sbjct: 184 VVISHSGRNKDTLLIAKKLHEQHVKIIAVTSFKDSPLAKLADLVLLSLAEEVNFRSESMS 243 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S +AQLT+ID L T + + +++ ++E+R Sbjct: 244 SLIAQLTIIDTLFTLVGSHLSQDTQSVVDTMRDVIEETR 282 >UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG49_SEBTE Length = 283 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 131/276 (47%), Gaps = 7/276 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ K++ ++ + +E A+ I++ D I S +A + S T+ R C+ + Sbjct: 1 MSLIIKLREA-KNFTPNEIGAAKYIISHSDEVIRLSCTELAKKTYTSPATIIRLCKKIGI 59 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ +FK+ LA + + N +++ DS+ KI ++ +L + DK Sbjct: 60 GGYQEFKVILATEINFFIKNSMEINKNNEIDKKDSISDIIDKISSLSIDSLKETKILTDK 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + +D++ A+ + +G G+S VA DA KF R Q + N ++ Sbjct: 120 NVVKSVIDMINNAEILDLYGSGASHFVALDANYKFMRIGKVTATYALYDQQYVQAKNSNE 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 ++ S++G T ++E+A++ EN A +I +T ++ L + A ++ + E+ Sbjct: 180 NHAAIIFSYSGETAEMIEIAKILTENKAKIITITKNSDNTLEKFADKSLYVTAKENLYRS 239 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 + SR++ L VID+L T + K + L + + Sbjct: 240 AAIYSRISMLNVIDILYTAYFNLIYEKALEALGKTR 275 >UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=A0JVW9_ARTS2 Length = 309 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 14/292 (4%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I +L +L S R+VAE +L SP+ A +I+ +A+ A V E TV+RF + + G Sbjct: 10 LLHRISGRLPYLPPSLRQVAEAVLKSPEQAQTMTISELAVAAGVGESTVSRFVKELGIDG 69 Query: 63 FPDFKLHLAQSL----------ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHS 112 + L LA++ + V VN D+ GK+ S++ +L Sbjct: 70 YKSMLLGLAEATFISKAATSARTADSEVVYEGVNRGDTAAEIAGKVERSSVQSLRRTGQR 129 Query: 113 LDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMN 172 D AI RAVDL+ + + F +GSS+ A +A+ +F R + D +Q M Sbjct: 130 QDVEAIQRAVDLIDASNTVIFSCMGSSSIAAEEAVMRFTRAGKKCMLYRDTTIQVMLAAI 189 Query: 173 CSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDV--PE 229 GD+++ IS +GR+ +++ LAR+ A IA+T A G+PL A + + Sbjct: 190 IEPGDLLIGISDSGRSTPIIDAMHLARQRGAATIAITGAEGSPLRNYADVVLYTATVPSG 249 Query: 230 DTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKE-ALKESRFDK 280 + S+ QL VID+L + R ++LK+ + A+++SR Sbjct: 250 GELYGESVTSKWGQLLVIDILYATYASRHYDATVEHLKQTYQSAIRQSRTSP 301 >UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales RepID=C6JFM8_9FIRM Length = 285 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 130/280 (46%), Gaps = 5/280 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L+ I Q L+KS +K+A+ + + + SI ++A VSE T+ RFCR + Sbjct: 4 SILDSITEQYHSLTKSGKKLADYVFSHTTETQYLSITSLAENCKVSEATITRFCRGLGLS 63 Query: 62 GFPDFKLHLAQSLAN----GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 G+ FKL LAQ+ + V+ +DS+ + K+ + + +L+ D+ Sbjct: 64 GYNAFKLALAQADRTTDLGDSSNSAEPVSSEDSISTICAKVHAANLLSLNESYALYDEEE 123 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 +++A+ +L+ +++I FG G S +A +A +F + V+ D +Q + D Sbjct: 124 MSKAISILSSSRRIYCFGQGGSMIMAMEAWARFSTASPNFVHICDSHMQASAIAMADSKD 183 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 ++ S++G T+++ + Q+A VI +T + A A++ + E Sbjct: 184 AILFFSYSGSTRDMCDTLQIASSRHVPVILITHFPKSAGAEFASVVLQCGYNESPLQSGS 243 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + +++ QL +ID L G+ ++ A+ Sbjct: 244 VAAKVGQLFLIDCLFYGYCSQKPDTCSAARSATAHAIANK 283 >UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=1 Tax=Vibrio cholerae CT 5369-93 RepID=D0I0X8_VIBCH Length = 282 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 126/271 (46%), Gaps = 3/271 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +N+L +++ +E S + VA+ I+++ D+A + +I +A + SE TV R CR + Sbjct: 7 VNLLSRLRYGMEGYSPKLKTVADFIVSNADSAQYLTITELARDTMTSEATVIRLCRDLGF 66 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +G+ DF++ LA ++ N +V ++D +SA+ +L +D+ INR Sbjct: 67 KGYSDFRMALAIEISQPQFTKNNDVAKEDG--DRIDDATQSAITSLQDTSILIDRKQINR 124 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ QA I G+G+S+ V + R +D + M + + D+ Sbjct: 125 ICQMIHQADNIHCVGVGASSIVGRYLSFRLTRIGKSSTMFEDTHIAAMRAVKSTPSDLWF 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G TK++V +A A++ + V++LT+ +PL+ + + PE S Sbjct: 185 AISSSGSTKDVVYVATRAKKQQSPVVSLTNIRHSPLSVTSDEVMVAARPEGPLTGGAFAS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVK 270 +++ L ++D+L + Sbjct: 245 KVSALLLVDILINQLVAEHAEYAESVKDTAE 275 >UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUN7_9ACTO Length = 294 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 6/285 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + +I+ + L+ +E++VAE +LA P +I +A + S TV RFCR++ G Sbjct: 4 IETRIRGLVPTLTPAEQRVAEQVLADPLGTHRGTIGQLAERSRTSLTTVTRFCRALGMAG 63 Query: 63 FPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 + + + LA + ++ DD ++S + + + L LD + Sbjct: 64 YQELRFALATEAGEASSRDWTLGAAADIGPDDPMQSVLANLVATDVRALQETASQLDLAV 123 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + VD +T A+++ + + SAAV +D + + + D+ S D Sbjct: 124 AEQLVDAITTARRVDLYAVSGSAAVTNDLQRRLHQLGITCHLWIDVHDALASATLLGPED 183 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V + ISH+G T ++E AR+ A+ A+T+ + + A L +T E T Sbjct: 184 VAIGISHSGETIEVIEPLTAARDAGAVTAAVTNFPRSAITSVAGLLLTTSAREATYRSGS 243 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 + R QL VID L TG R + R A++ R ++ Sbjct: 244 LSGRHTQLLVIDCLVTGVAQRTSPASDAAVARTAAAVRPHRVGRR 288 >UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus RepID=C2HLD1_LACAC Length = 284 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 136/282 (48%), Gaps = 2/282 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ I+ + L K E+ + + I+A+P+N I SSI ++ + +S T+ RFCR + T Sbjct: 3 NIFSIIKGKKSQLPKKEQLLGDYIIANPENVISSSIQKLSKDTGISTATIVRFCREIGTN 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D KL L + ++ + + + + + + ++ + L+ +++ +A Sbjct: 63 GFSDLKLQLVAAQSSVNNNDYHEFDAGEGIAAIKNTMAARFESAIEATQSGLNDNSVEKA 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V + + I +G G+S VA D KF R + Y D+ + + + D+++L Sbjct: 123 VRKIYNSSSILVYGAGASGIVASDMYQKFMRVGKNINYISDLHVALAQLASFTSDDLLIL 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITL-DVPEDTDIYMPMVS 239 IS+ G+T + ++ ++A + + LT + + +A++A L + D+ E + S Sbjct: 183 ISNDGKTTEVSDIQKVADKFGIPTLLLTANPRSFVAKKADLVLLTQDIGEPSIRSGATTS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 ++Q+ V+DVL + + LKR EA + ++ Sbjct: 243 LISQMFVVDVLVFSYVSVHSDEVLKKLKRSNEATAIHKNSRK 284 >UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNS3_LACPJ Length = 292 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 143/278 (51%), Gaps = 3/278 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L I+S +LS ++RK+A+ I+A P SI+ +A VS TV+RF + + Sbjct: 12 VLTLIRSYYPNLSVTDRKIADYIIADPIKTAAQSISDLAAAVGVSTATVSRFVKRISFSS 71 Query: 63 FPDFKLHL--AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DF L A+ + ++V + + + F S ++LD + ++ + R Sbjct: 72 FRDFSRELTAAEPIEQTNAEAFQDVEKQTTFKGIAESTFNSIRSSLDQTSQVMTEADLKR 131 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+LL A+ I F+GLG SA A D +KF R +P ++ D +Q M + DV V Sbjct: 132 AVELLLNARSIGFYGLGGSAVAALDGYHKFVRTGIPCAHNSDYDMQLMQAAQMNASDVAV 191 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 +ISHTGR + +++ VIALTS +PLA+++T+A E + S Sbjct: 192 VISHTGRNQQTLQVLATLTSQSVPVIALTSFGNSPLAKDSTVAFISVAEEINYRSEGLTS 251 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 +AQ+++ID L + + ++L RV+EA+ ++R Sbjct: 252 LIAQMSIIDSLFLMTAVHGNIEMAESLGRVREAISQTR 289 >UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI5_9CLOT Length = 294 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 131/281 (46%), Gaps = 5/281 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+S+++ + +++ VA IL + + I +A+E+ VSE TV+RF ++M Sbjct: 13 TIVLDIRSKMQDFNPAQKAVANYILNNFYDMEGMPIRDLAVESEVSEATVSRFVKAMGYE 72 Query: 62 GFPDFKLHL---AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + F+L + G+ V E+D+ KIFES + L +D A+ Sbjct: 73 NYRAFQLEVTKSKAERRKGSLKGYAEVTEEDNAPGICRKIFESNIQALQDTLTVIDYDAL 132 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA DL+ +A+++ F G S A+ + R + D Q ++ DV Sbjct: 133 ERAADLIARARRLCIFAQGRSKVTANSIRLRLHRLGIEGTLYTDPHEQAIASSLMGPEDV 192 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAI-TLDVPEDTDIYMP 236 V IS GR+++++ + A + +I +TS PL +EA + + T++ E P Sbjct: 193 AVGISTFGRSRSILVSIRRAAARGSSIIGVTSYQNTPLEKEADILLRTVNNDEADFGSEP 252 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + + Q+ ++D L R K + K ++A+++ + Sbjct: 253 SCASVTQMVMLDCLYMLVAKRMEGKAEERFKITRDAIQQEK 293 >UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PED1_BACCO Length = 289 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 3/276 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++ +I+S+L LSKSE+K+ E IL+ ++ + + +A +A VS TV RFCRS+ Sbjct: 6 NIILQIKSKLTSLSKSEKKLGEYILSHAVETVNDNTSELAKKAGVSPATVVRFCRSIGLS 65 Query: 62 GFPDFKLHLAQSLANG-TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ L + G + ++ ++ + K+ ++ + L+ S I + Sbjct: 66 GFSQLKIRLYADASGGLDREIYTDITPNEDITMIADKLALRFNQSITQTANLLETSCIEK 125 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ ++ I +G+G+S A D +KF R PVV++ D L S +N S + V Sbjct: 126 ITAMVDKSPAIYVYGIGASHVAAEDFTHKFSRIGKPVVHTLDHHLLGSSLINASKDCMFV 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPED-TDIYMPMV 238 IS++G T ++L Q+A++N + +T + LA + E Sbjct: 186 AISNSGETNEAIKLTQIAKQNGLFTVGITQKRDSTLASIVDAPLIHHGGEAVLLRSAATT 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 S AQL IDVL + + + LK K ++ Sbjct: 246 SLAAQLFTIDVLYFAYVAKHYHEIMGRLKNSKINIQ 281 >UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=Anaerococcus RepID=C7REF2_ANAPD Length = 279 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M KI+ + E + S+ K+A+ IL P I + +A S+ + RF + + Sbjct: 1 MTYTIKIKERSEDFTPSDTKIAKYILDKPGEVIKINSQKLADLTGTSQSAIIRFVQKIGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN-VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +G+ KL +A+SL N + ++ DD V K + +++++ +D+ I+ Sbjct: 61 KGYTSLKLDIAKSLENDEINLKSEVISADDKVGDIIEKSKINVISSIEKTYALIDEDQIS 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A+D + A + G+GSS V D + K R Y D N + D++ Sbjct: 121 KAIDNIVYANFVYLAGIGSSGLVCEDFLYKLQRSGKKAFYETDAHTNLSLLTNIKEDDLL 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + I++T +K ++ A+ A+ A +I++T AG LA + + I + E Y + Sbjct: 181 ICITYTALSKEVLIAAEYAKTIGAKLISITKAGRGKLANMSDILIPIPEIEKKMRYGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 SR A + D+L G+ + + NL KE + + Sbjct: 241 SRFASQIITDILFYGYISKNMDEVVKNLMVSKELTDKLK 279 >UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBM1_9CLOT Length = 266 Score = 239 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 124/276 (44%), Gaps = 11/276 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L ++Q + S E+ +A+ I+ D + +I +A E S T+ RF + + Sbjct: 1 MDILCEVQRKYNEFSDKEKDIADYIMQHGDKIKNINITDLAKEIGTSGATITRFAKKIGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ L G+ V +N++D ++ ++ + +DK I + Sbjct: 61 DSFVDMKIKL------GSNKVELPINDEDG---IFSYTYQYYNEVIERTKMLIDKEEIFK 111 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ + +AK I +G+GSS + M + R V D + ++ S+ D+V+ Sbjct: 112 VVNEIKKAKNIYIYGVGSSGLTCKEMMQRLLRMGFNVHCISDSHMMIINSSIVSENDLVI 171 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G T+ ++ + ++EN A ++++T G+ +++ + + + P D + + Sbjct: 172 GISISGETQEVIHSLRKSKENGAKIVSITGFEGSTVSKYSDIKFIVYNPNFVDRSRFINT 231 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + + + ++D L + L+ + + Sbjct: 232 QFSAMYLLD-LISMVLLKDINLSNKMQTTINAIINN 266 >UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2J8J9_FRASC Length = 293 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 2/277 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +LE+I++ LS +E++VA +LA P IH S++ +A + S TV RFC+S+ RG Sbjct: 18 VLERIRALSASLSSAEQRVARQVLADPVAMIHQSVSELAQVSGSSPATVVRFCQSLGLRG 77 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + + KL L + + V+ D + GK+ A + L +D + Sbjct: 78 YQELKLALIRETLPVERQLVDEVSAADGPDEIAGKVLGGAASALTEAARGIDGGVLAAIA 137 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 DL+ A + F +G+SA +A DA + V ++ D +Q ++ + GD+ V + Sbjct: 138 DLVVAAPRTLFVAVGTSAPLAMDAAYRLTTVGVDARFAGDAHVQHVTARMLAAGDLCVAV 197 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SHTG T + + A + A A+TS +PL A+ + E M SR+ Sbjct: 198 SHTGSTAETLAAMRAAVDAGAHTAAITSFARSPLTELVRHAVVVGSRETAYRIEAMTSRI 257 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 L+V+D L +R + L + + E R Sbjct: 258 VHLSVLDALFALVVVR-SPRSPGALAMTADVIVEHRM 293 >UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteriaceae RepID=A4WDW6_ENT38 Length = 274 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 132/273 (48%), Gaps = 10/273 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +++ + S +++K+ +L P ++ +I +A E++ SE +V R CR++ + Sbjct: 6 NLLLRLRQGVSGYSPTQQKLGSFVLNDPSRVLYLTITELARESDTSEASVTRLCRTLGCK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ +FK+ LA + + + + D ++ + ++ L LD+ + +A Sbjct: 66 GYTEFKMALALDVQRE----HVPLKKGDEIDEIVEE----SILALQDTSRLLDREILLKA 117 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L Q++ + +G+ +SA + K R P D+ M+ + D+VV Sbjct: 118 AQALHQSRSVYIYGVAASAIIGDYLHYKLLRLGKPAQLFSDMHRASMNATTLTSDDLVVA 177 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G T++L+ + +LAR+ A V+AL++ +PL + + + PE + ++ Sbjct: 178 ISSSGSTRDLLHVVKLARKRGAHVLALSNTPRSPLTSLSDMLLVAAKPEGPLSAGALNAK 237 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 + + ++++LAT ++ D ++ A Sbjct: 238 VGVMLLVELLATTMISLD-DRYGDASQQTASAT 269 >UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=Proteobacteria RepID=Q0BBX6_BURCM Length = 324 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 145/287 (50%), Gaps = 1/287 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I L ++ERKVA ILA A H+SI A+A +A VS TV RF +++ R Sbjct: 38 DIVARIAECAPELREAERKVAAYILADLARAAHASIGALARDAGVSVATVTRFAKAVGCR 97 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + K+ +AQ+ A G ++ + S +++ L H L ++ + A Sbjct: 98 DVRELKVLVAQAAAVGQRFLVPSDAHPAEDASPASVVYDEIRVALAHNHQLLRNTSFDAA 157 Query: 122 VDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 DLL AK + +G G S A+A + + RF PV D +LQRM S VVV Sbjct: 158 ADLLAGAKMVYVYGQGGGSTALADELRFRLVRFGRPVASYQDSLLQRMVAATLSRDAVVV 217 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +GR L+E +LA+ A +IA+T+ +PLA+ A I + E IY P SR Sbjct: 218 ALSVSGRVPELLESCRLAKRYGATLIAITAPASPLAKLADHLIPVVAFETDFIYKPSTSR 277 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 A + IDVL TG LR G R++L+R+K AL R + D Sbjct: 278 YAMMMAIDVLVTGVALRLGDAGRESLRRIKHALDAHRGGGDRQPVGD 324 >UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=Firmicutes RepID=A6LRG7_CLOB8 Length = 291 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 142/278 (51%), Gaps = 2/278 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L+KI + L ++E+K+A+ I+ + + I +++ +ALE++VSE T+ RFC+ D + Sbjct: 15 SVLDKILCIYKSLHEAEKKIADYIINNKERVIEMTVSELALESSVSEATIVRFCKKCDLK 74 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D K+ +A+ + N N + +++ I + + L +++ I R Sbjct: 75 GFYDLKIKIAKEMVNLKSSNISNELDSNNIMQSLQNILANKIEELKQTISMMNEGNIKRI 134 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++ + A+ + F +G++ VA D KF + + V + Q + DVV++ Sbjct: 135 LEAIKGARIVQFAAVGNTIPVAMDGAYKFNQLGISSVTNTIWETQLAFSYTLTKEDVVIV 194 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G +K LV L ++A E A I++T+ +P+A ++ I E + SR Sbjct: 195 ISNSGASKELVALLEIANERQATTISITNHENSPVANKSKYHINTSTREKLFLDEFSFSR 254 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 ++ + VI++L T R + + + ++++ E + Sbjct: 255 VSAMVVIEILYLLLT-RDKEDAYNWISQHEQSIAEGKI 291 >UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLH9_PECWW Length = 320 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 120/283 (42%), Gaps = 4/283 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + I + L LS + + +A +L +P + +A+E VSE T+ RFC+ + G Sbjct: 36 VRTYIANILHGLSDTNQTIANYVLQNPSMVAQLPVKKLAVEIGVSEATIVRFCKHIGYAG 95 Query: 63 FPDFKLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 + K L + L + + V ++ +D+ KI + + +D IN Sbjct: 96 LLELKSALNRELFDDSDLSLPVTPDILMNDTRHDVAQKIALTVDRAVKETIDLIDMQTIN 155 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + V L A+++ F G G+S A +A +K R + D + N D+V Sbjct: 156 QIVSLFISARRVMFIGFGASGLAALEARDKMNRIGIDSDAFTDRFSMTLKLANLKPDDLV 215 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMV 238 V SH+G T +V +LA + A +A+T S +PL + + + Sbjct: 216 VAFSHSGETPEVVNAFKLAEKAGATRLAITHSTHSPLTSLGNYVLLTCGESERYQGDSIG 275 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 +R++QL +I+ L T T + F +K L + R + Sbjct: 276 TRVSQLFMIEFLCTELTKQNFKDFSSQSISIKALLIKERIKQH 318 >UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enterobacteriaceae RepID=A1JQZ2_YERE8 Length = 286 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 136/283 (48%), Gaps = 8/283 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L +I L L+++++K+A+ IL +P++ + S + A +A VS+ + +F + + Sbjct: 1 MSILNEITWLLPELAENQKKIAKCILDNPESILSISSSQFAEDAGVSQSAIVKFSQKIGM 60 Query: 61 RGFPDFKLHLAQSLANGT-------PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GFP K+ +++ L+ ++ +++ +DS+ K+ A++ + Sbjct: 61 KGFPALKIAISEELSRNNLFKSYPHKALHNSISPEDSLMVMAQKLAHEKTASIMETTRKI 120 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 + S + V L+ A+++ G+ + A D K + + + D+ +Q + + Sbjct: 121 NFSVFQQVVSLINAAQRVQIVGIWGAGLTAKDLSYKLQKIGIMTLVEADLHVQIAAALTL 180 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTD 232 + DV +++S TGR K++ A +A+ A VIA+T + +PLA+ A + E+ Sbjct: 181 TPKDVQIVLSFTGRRKDMKIAATVAKAQGATVIAITGSKVSPLAKIADYVLESISDENEW 240 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR AQ T+ D++ +R + + + Sbjct: 241 RSSSISSRTAQNTLTDLIFLALMQQRKEMAKPLILNASMTINN 283 >UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=Firmicutes RepID=B1R0U2_CLOBU Length = 284 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 138/280 (49%), Gaps = 4/280 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++++ I ++ ++E+K+A+ IL I +I+ +A A S+ TV RFCR + + Sbjct: 6 SIIDTIYAEYNSFFEAEKKIADYILKYGTKLIEMTISELAEAAGTSDATVTRFCRKCNMK 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVN--EDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF K+ LA+ L+ R +++++ I + + + ++++ Sbjct: 66 GFHHLKITLAKELSESQKEDTRVSGDVSEENIKESLNNILFNKIEEMKQTILTINEEKFK 125 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + +L A + F +G++ VA D KF + V V + Q N + DVV Sbjct: 126 EILQILRNAGIVQFVAVGNTIPVALDGCYKFNQVGVASVANTIWETQIAYTYNLKENDVV 185 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + IS++G +K L+++ ++A+E A+ IA+T++ +PLA+ + I E + Sbjct: 186 IAISNSGASKRLIDVIEIAKEKGAVTIAITNSDKSPLAKLSNYHIKTATREKLFLEEYYF 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR++ +TVI++L T+ + L R ++++ + + Sbjct: 246 SRISAMTVIEILFLFMTVGKHD-VYKTLSRHEQSIADDKV 284 >UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBX8_9LACT Length = 285 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 127/277 (45%), Gaps = 2/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+ + L +SE+K+AE IL P I S +A EA S V RFCRS+ + Sbjct: 4 NVLLTIREKKITLPQSEKKIAETILRDPVKVIQMSATDLATEAGSSSAAVIRFCRSIGIK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF + KL L+ + ++ D+++E K+ + + LD I R Sbjct: 64 GFTELKLQLSADSQGIKDNLYTDILADENLEQVKKKMLINTNHLFKETNNVLDTKQIERV 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 +LL ++ I +GLG+S VA D KF R VV S D L S + V Sbjct: 124 SELLHESSIIYLYGLGASHIVASDIQQKFSRMGKIVVCSLDQHLLVTSMAVAGENAVFFG 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLD-VPEDTDIYMPMVS 239 +S++G K ++ L +A+E +ALT+ L+ EA +A+ E +S Sbjct: 184 VSNSGEKKEVLALMIMAKELGLKTVALTNNTENALSLEADIALKTAFAHEAPLRSGATIS 243 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 L Q+ +D+L + + NL++ K A++ Sbjct: 244 LLTQMYAVDILFYDYASKNYDLTVTNLEKSKAAIQRY 280 >UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1QW74_CLOBU Length = 281 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 127/280 (45%), Gaps = 2/280 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN I+ + +++SE+K+A+ +L + S + +A S +V RF R + Sbjct: 1 MNCSLLIKQIYDKMTESEKKIADYVLVNSSEVYKFSASELANITKTSSSSVVRFSRKLGF 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRN-VNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF +FK+ LA+ N + + ++ +D++ K + +++ LD+ I Sbjct: 61 EGFQEFKIELAKDDINPVENIEYDYIDTEDNIREVIVKTANKNIQSINDTISLLDEHTIE 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A+ + AK I FG+G SA + D K R + + S + +Q N S+ D+ Sbjct: 121 EAIKAIKNAKNIYIFGIGESALIGLDLQYKLLRIHKNAMISLESHVQLSMSANISNDDIA 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMV 238 + IS+ G+TK + +E A I +T G P++ + I + E + Sbjct: 181 IGISYLGKTKEVYSALSKCKEKGAKCITITKFGENPVSSLGDIKIQVPFVEKDLRIGAIS 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR+ QLTVID+L G + LK + ++E R Sbjct: 241 SRIVQLTVIDILFVGLAKENFSDVEKYLKETRNMIEELRM 280 >UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DJX2_STACT Length = 288 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 4/276 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++ I+ Q++HL+K+E+ +A+ +L P+ + S + S TV R + +G Sbjct: 6 LIIHIREQMKHLTKNEQHIAQFLLEHPEKVLEMSAQTLGDVTKTSSATVIRCAHKLGFKG 65 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F D KL L+++L + + + +D+S K+ A TL+ L+ A+ V Sbjct: 66 FVDLKLSLSRNLPQHEAHNYKEIAQDESPREIKRKLLSRAAYTLETTEVLLEDQALEALV 125 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD--VVV 180 D L +KI FG+G+S VA D KF R + V+ S D + D + + Sbjct: 126 DKLYDVQKIVVFGVGASHIVAEDIYQKFTRAGMEVIQSADAHVLATVLAGYHKKDNVLFI 185 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITL-DVPEDTDIYMPMV 238 +S++G + + LA +A A V A+TS + + LA EA + + E + Sbjct: 186 GVSNSGHNQETLRLAHVAHYYGATVAAITSRSDSKLAGEADIVLLHDASSEKSLRLAATS 245 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 S +AQL +D+L + + +L K+A++ Sbjct: 246 SLIAQLMTVDILFYTYLSKDYQAHVAHLSETKKAVE 281 >UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AH41_LEIXX Length = 289 Score = 237 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 7/286 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++ + LS +E ++A+ ++ P + +IA +A + S+ ++ RFC+++ Sbjct: 3 DVLSAVRQAVPRLSATEARIAQTVIEHPQRVVDLTIAELAAVCDASQASIARFCQALRYS 62 Query: 62 GFPDFKLHLAQSLANGTPYVNR------NVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 G+ +F+L +A + + R ++ DS++ KI ++ LD Sbjct: 63 GYREFRLAVAAATSREQATRERFELTESEIDPSDSLQEVVAKIAYQETLAIERTARELDA 122 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 A++ V + A ++ +G+GSS A D K R + S D L S Sbjct: 123 EALDAVVAAIIAASRVDLYGIGSSILTAQDLQQKLSRIGLTAFCSVDSHLALSSAALQKP 182 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIY 234 G+V + SH+G T+ +AR A +A+T+ + +A + L + E+ Sbjct: 183 GNVAIAFSHSGETRETNHALAVARAAGATTVAITNVPESSIAAVSDLLLMTQARENFYRS 242 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 M SR AQL ++D L R + D+L+ EA++ R ++ Sbjct: 243 GAMASRTAQLALVDFLFVRVAQRLYDQMTDSLRLTYEAVRSQRPER 288 >UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 Tax=Vibrio shilonii AK1 RepID=A6D304_9VIBR Length = 289 Score = 237 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 129/277 (46%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ I+ + L+K+E+ +AE L +SI +A +VS + + + + Sbjct: 12 QVIPNIRMMMPSLTKTEQSIAENFLQPHFLQKSTSINEVAERLSVSPALIVKVSKKLGFS 71 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K L + + + DDS E K+ ++++ L + + +D S ++ A Sbjct: 72 GFKQLKESLYAQSETQSYAPSERLLPDDSAEKIVSKVLQNSINALTEILNFVDVSMVDAA 131 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + L +A+ I F +G S+ + D +K R + D L MS +D DVV++ Sbjct: 132 AEALLKARNIELFAVGGSSIICEDFQHKLLRIGIKSSVPKDRHLMLMSASIMTDQDVVLV 191 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +SH+G+T +L++ + A+++ A VI++T + L+ + + + + + +R Sbjct: 192 VSHSGQTVDLMDAVRQAKQSGATVISITNNYHAELSSLSDIPLYAPASPEPVLGKNGTAR 251 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L +L +ID L + + ++L + A++ Sbjct: 252 LVKLAMIDSLYATMASKMPSLAEESLSKTIRAVERLH 288 >UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus RepID=Q040R4_LACGA Length = 283 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 126/279 (45%), Gaps = 2/279 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ K+ + + + +K+A+ +LA P + + S ++ RFC+ + Sbjct: 1 MDLSTKVLNNYPNFKGASKKIADYLLAHPKTFLQEDAQGLGKMTKTSAASMIRFCQQLGF 60 Query: 61 RGFPDFKLHLAQSL-ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 +G DF++ LAQ + ++ V+ D+ K+ S + H +D A+N Sbjct: 61 KGLKDFQIQLAQDTPQDNEETIDPIVDHHDNPHIVLQKLLSSIEKNTEQTAHLIDGLALN 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 +A++ L A +I G+G+S+ A D KF R + VV++ DI + D + Sbjct: 121 QAINFLKNADRIYLAGVGASSLPAQDLYYKFIRSDKNVVFNQDIHIALERICYSHSTDAL 180 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMV 238 V+ S++G T+ ++ +A AR+N +I +T S +PL A + + + E + Sbjct: 181 VIFSYSGLTQEILLMADQARKNHTPIIVVTRSRQSPLVELADVVLGVSTDEKLLRVGAIN 240 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S +++ V VL + + + + + + + Sbjct: 241 SLFSEMFVSSVLFLATINQELPRLEERFRETELITNQLK 279 >UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=16 Tax=Enterococcus RepID=C2H8J8_ENTFC Length = 286 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 145/283 (51%), Gaps = 3/283 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+++ +I+S +E S +E+K+A I+ + + + +A + +S PTV RF + + Sbjct: 5 MSVISRIESMMEDYSSAEKKLANYIIGNIEKVPTMTANELAEASGLSAPTVVRFSKKIGF 64 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + DFK+ ++ L G ++ ++S S K+ +A + L++ I + Sbjct: 65 QSLTDFKITISTELQTGIDEGFSDIEANESFYSIKNKLGNNAQVAIKETVDILEEETIQK 124 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V+ L A+ + +G+G+S+ V D + K+ R P+++ DI + ++ V+ Sbjct: 125 VVECLETAESVFLYGVGASSLVVEDILQKWSRVGKPIIFEKDIHVLLPQLVSNEKKKVLW 184 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVP-EDTDIYMPMV 238 L+S++GR+ ++V LA+LA+ + +IALT PL++ A + + P E T+ Sbjct: 185 LVSNSGRSTDVVALAELAKNMNIEIIALTQFGNNPLSKIADVLVQTSRPKEITNRSAATN 244 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 S LAQ ID++ + + + +K+ +EA+++ D + Sbjct: 245 SLLAQFATIDIIFYFYMAKN-ESLSEKVKKTREAIQDYFMDSK 286 >UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BB20_PARDP Length = 280 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 138/266 (51%), Gaps = 6/266 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++I+ L + +ER+VAE +L +P AI SI+ A A VSEP++ RFCR +D G Sbjct: 15 MLDRIRQSLASFTPAERRVAEAVLDTPSTAITWSISDAARIAKVSEPSIIRFCRRLDCDG 74 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNE----DDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 FPDF+L LAQ LA P DD + + IF+ A ++ R LD A+ Sbjct: 75 FPDFRLKLAQQLAKHQPAPQPLARPGSGNDDPLAAMVDDIFQRAGQAIEEARRDLDLGAL 134 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV +L +A+++ +G GSS +A +A ++ +P V D LQ S GD+ Sbjct: 135 RAAVAMLGKARRVDIYGYGSSGFMASEAQHRLAALAIPAVAYSDPTLQMHSAPLLGPGDL 194 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPM- 237 + ++S +G T L+ ++AR+ A V+A++ G+ +A A + + L+ + M + Sbjct: 195 LFVLSFSGLTSYLISNIEIARKAGAPVLAISPKGSIVASLADVNLNLNAYRQSSGRMAVP 254 Query: 238 VSRLAQLTV-IDVLATGFTLRRGAKF 262 R+A + V +D L G + Sbjct: 255 TGRVAPMYVLLDALFAAMAEEMGGEH 280 >UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus RepID=D0R5V5_LACJF Length = 272 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 8/279 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +++ + L+KSE K+A I ++ I+ +I ++ N + T+ R C+ + Sbjct: 1 MEFIQRYNQNKDKLTKSENKLANYIATHTEHVIYDTIKSLGTANNTGDATIVRLCKKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ LAQ T + + + K+ +++++ ++ S + + Sbjct: 61 SGFSDLKIALAQDSMMTTSKSHEEAQ---TSSELSSKVL---ISSIEKTEELINPSVLKQ 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV LL +A++I FGLG S A D + R + D +Q S D+VV Sbjct: 115 AVSLLAKARRIHIFGLGHSGESARDYERTWLRIGLIANAESDPHIQVQVATLLSKDDLVV 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S +G TK+ + ++A+E A +IA+T+ +P+A+ +++ V E + Sbjct: 175 GLSLSGHTKDTYDSLKVAKEYGAKIIAITNDLTSPIAQLGDVSLQTSVSE-FMNIGTVAG 233 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +++QL + DVLA + ++ A+ + Sbjct: 234 QVSQLYLCDVLAREYEKLNKVDVDKIKEQALAAVMKKSI 272 >UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKN4_PASMU Length = 286 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 8/280 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L K++ LS +E+++A+ IL P SS A+A + VS+ + +F + + Sbjct: 1 MGFLIKLKHTYPSLSPNEQRIADFILKHPHEVKSSSSKALANQIAVSQSAIIKFSQKLGA 60 Query: 61 RGFPDFKLHLAQSLANGTP------YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 F DFKL ++++L +++ ++ + D + K+F L Sbjct: 61 DKFSDFKLAISEALIRQETQSEPRVHLHDSITDKDDLSEIAEKLFVEKQQALKESLSLNA 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 + R V+ L QAK+I G+G+SA VA D K + +PVV D + + Sbjct: 121 IPYVARVVEQLMQAKRIQLMGIGNSALVAKDFFYKLTKIGLPVVTETDTHASLAMSQSLT 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 D++ LIS +GR + ++ A+ A+ +IALT+ PL A + E T Sbjct: 181 PQDILFLISFSGRHREILLAAENAKARQIKIIALTALTTNPLHELADYLLYSVADESTFR 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 + SR AQ + D+L G + D + + + Sbjct: 241 SSSIASRTAQHAITDLLFMGILQ-QKEHANDLILESRALI 279 >UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF6_9LACT Length = 292 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 150/281 (53%), Gaps = 6/281 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + + ++ ++ + +E+ +A+ + + ++ +++ +A + +SE T+ +F + + G Sbjct: 6 LEKLLRPYIKSFNDTEKIIADHFIKLGHDVVNKTLSNLADDTGLSEATIFKFVKKIGFDG 65 Query: 63 FPDFKLHLAQSLANGTPYVNR-----NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 FP+FK+ +A + N N +++++DS + K+ S LD++ SLD+ Sbjct: 66 FPNFKISVASNFQNIEERKNELTVFSDISKEDSSYAIAQKLVYSNKLALDNLIGSLDEER 125 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 IN+A++L+ ++ I FFG G+S+ +A D+ +KF R Y D +Q D Sbjct: 126 INQALNLIYDSQTIHFFGQGASSVIALDSYHKFLRTRFLCNYISDYHMQLSYATKLGPND 185 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 V L SH+G T +E+A++ R N +I LT + T L + ++++ +D E Sbjct: 186 CVFLFSHSGETNETIEVARILRNNQVNIIVLTGNHHTDLVKLSSISFVVDSEESAFQSET 245 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + SR+ LT+ID+L AK +D+L+++++AL ++ Sbjct: 246 LTSRILYLTIIDILYVALMYHDEAKNKDSLEKIRKALAVTK 286 >UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C246_9CLOT Length = 292 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 126/279 (45%), Gaps = 2/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L + L L+ +E++VAE +LASP S+ +A+ E T+ R C+++ Sbjct: 9 NILATTRFLLPSLTAAEKRVAEFVLASPKEVTRMSLKKLAVRCECGEATIVRLCKTIGVS 68 Query: 62 GFPDFKLHLAQSLANGT-PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G+ + K L L + ++ + ++FE + L Sbjct: 69 GYAELKSLLETQLQLPAVKEESVRLSTGQGMGEIVARVFELNILNLRRTLEVAAVEEYEN 128 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A ++L+ A KI FF +G + A +F R D +Q ++ N +GDV + Sbjct: 129 ACEVLSTANKICFFAIGDAMFPCSYASLRFRRIGYDCYADSDADVQIVNACNMKEGDVAI 188 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 ISH+GRTK +VE ++A+ A+ I +T AG + L + + + + + T + Sbjct: 189 AISHSGRTKQVVEAMRIAKSRGAVTICITKAGKSELTKYSDIVLYNVTTDTTVDKEIIAR 248 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 R+A+ ++D + G + A L+ V E LK ++ Sbjct: 249 RVAEQAMLDAVYMGVLQKMEANSFARLQEVSENLKVNKL 287 >UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family n=11 Tax=Escherichia RepID=B7UNF1_ECO27 Length = 281 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 4/278 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + IQS L ++E+KVA+ IL+ ++ S+ ++ +++ SE T+ R C+ + + Sbjct: 5 TVKSLIQSNYPTLHQAEKKVADYILSHAHEVVNYSVTELSEKSHASEATIVRTCKKLGYQ 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ K+ LA+ + N N + D + S + + L + + Sbjct: 65 GYYHLKIALAKEVINPDNSYPDNTDFTD-ITSLATFLLKKQAEDLIQSTQFFNAEVLESI 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + LL I FF G+S +A KF + + V +Q + + D+ + Sbjct: 124 LKLLANCDTIFFFAAGNSNPLAVYGAYKFSQLGLKTVVHVSPEMQINAAYSMGKRDLAIG 183 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T +V++ ++ +E A + +T+ +PL++ +T + V + +R Sbjct: 184 ISNSGSTNLMVDIFKVVKERGAKSVCITNYIKSPLSKLSTHQLNTAVSDKIFFEAFDSTR 243 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + + VID+L F + A + R +E SRF Sbjct: 244 VPAMGVIDMLVLLFMYKNKAHYEKY--RTREEFLGSRF 279 >UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C5BVH6_BEUC1 Length = 299 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 6/281 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L ++ L L SER++AE IL P +I +A S+ +V RFCR++ G Sbjct: 16 VLTRLPGLLPTLRSSERRIAEAILDDPQAVSRDTIEQLAARCGTSKTSVTRFCRTIGLAG 75 Query: 63 FPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 + + +L LA + + + + + + ++ + + L +LD++A Sbjct: 76 YTELRLALAGDVGRRRDESWRAELGSSADPQNPADVVVDELLTANVRALTETVRTLDRAA 135 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + +VD L A +I +G+G S VA D +F R + D Sbjct: 136 LAASVDALASAGRIDLYGIGGSGTVAADLQRRFHRIGRVAHAWSESHDALTGAAMLGASD 195 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V + +SHTG T + LAR+ A IA+T+ G+ +A A L + E+ Sbjct: 196 VAIALSHTGETSEVAAALALARDRGATTIAVTNYPGSAVAAAADLVLVTAAHEERARADG 255 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + R AQ+ V+D L + + L+R EA++ +R Sbjct: 256 LAGRHAQMFVVDCLYVLVAGVLHDESQSGLRRTSEAVRSTR 296 >UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=Lactococcus lactis RepID=A2RL41_LACLM Length = 283 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 4/278 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ L I+ + + E+K+A+ I + + S +A E S + RF R + Sbjct: 1 MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGY 60 Query: 61 RGFPDFKLHLAQSLA--NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 GF K L+ S A + VN+ ++ S K+ ++ +L I Sbjct: 61 DGFSQLKQKLSASYAVHEDDEDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEI 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV L+ +A+ I FG+G+S+ VA D KF R V + D L S + Sbjct: 121 MAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHLFVSSLSISDRKTI 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPED-TDIYMP 236 + IS G TK ++ELA++ R + +IA+TS + L + + + ED Sbjct: 181 FIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA 240 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 +S +AQL V+D+L F + D L++ ++A+K Sbjct: 241 TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIK 278 >UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillales RepID=Q02YU6_LACLS Length = 273 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 8/277 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + I+ + E L+KSE+K+A +LAS + ++ ++ + V + T+ RFC+ + Sbjct: 1 MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ +A+ ++ + + + + S + L + LD + Sbjct: 61 SGFSDLKIEVAKE------SYSQKSSNRTDLTLFFDENENSIIEILHETKSKLDLEQFEK 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+++A I FG+G S A D F R VPV Q + D+++ Sbjct: 115 SSKLISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISGSHFQLQTAALLKKTDLII 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G+T L E ++A+E A +I +TS+ +PLA+ + + + V E+ + Sbjct: 175 GISLSGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQT-VNEEFFDGGSLTG 233 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 +++QL + ++L K + + + A+ + Sbjct: 234 KISQLYICEILVKNHERLYKDKSIQSREAIIRAVMDK 270 >UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YGT9_MOBAS Length = 305 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 158/289 (54%), Gaps = 3/289 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++++++ +L + +++R VA+ +L + D A SS+ A+A A VSEP+V RF R M Sbjct: 17 SLIDRMRQELPAMKRADRAVADALLENIDAATRSSVKAVAGRAGVSEPSVIRFARHMGCE 76 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVN-EDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF DFK+ LAQ A G Y++ + + G ++E+ L D +A++R Sbjct: 77 GFSDFKIRLAQDYAIGRMYLSADYQHPAKTGSDVAGHVYEATSQALASAFAQRDPAALDR 136 Query: 121 AVDLLTQAKKIAFFGL-GSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A DL+ ++++ FG+ GSSA VA +A N+ FR ++ + D QR++ DV Sbjct: 137 AADLIDGSRRVFCFGVGGSSANVAAEAENRLFRLDLAASATADAYKQRITAATAGKDDVF 196 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAI-TLDVPEDTDIYMPMV 238 ++ S TGR ++L+E A+ A++ A +IA+T+AGTPLA EA + I + E+ YMP Sbjct: 197 LMFSVTGRPRSLIESARSAKQCGASIIAVTTAGTPLAIEADVLIPLIAFDEEKFFYMPNR 256 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R QL ++D LAT RR L + L + + + + D Sbjct: 257 GRYGQLFILDCLATLLGGRRMKHISSKLWNARTMLADLNGESENQPVGD 305 >UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n=48 Tax=Gammaproteobacteria RepID=B5FDJ7_VIBFM Length = 283 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 7/276 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+LEKIQ+Q +LS + K+ + IL P + S A+A + VS+ ++ + + + Sbjct: 1 MNILEKIQNQRSNLSSNGIKILDFILDDPASISSYSSQALAAKVGVSQSSIVKLTQRLGF 60 Query: 61 RGFPDFKLHLAQSLA------NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLD 114 +GF FKL + + L ++ +N DDS + K+ + L ++++ Sbjct: 61 KGFTAFKLAIIEDLGRKQAILEPERPIHNKINSDDSSLTIAQKLVQEKTHALIATTNAIN 120 Query: 115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS 174 S LL QA++I G+G SA A D K + + + D +Q + + Sbjct: 121 FSEFELVTTLLNQAQRIQIVGIGGSALTAKDLAFKLLKIGMTALTEQDSHVQIATANTLT 180 Query: 175 DGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDI 233 DV ++IS++G K ++ AQ A + A VIALTS +PL + A I E Sbjct: 181 KQDVQIVISYSGSRKEILMAAQTAMDKGATVIALTSTKKSPLRKLANFCIDTIADERQFR 240 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRV 269 + SR AQ + D+L + K + + + Sbjct: 241 SSSISSRTAQNVITDLLFMTLLQIKSDKAKLLIDEI 276 >UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=Clostridiales RepID=A3DDB2_CLOTH Length = 299 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 9/286 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L++IQ+ + SK ++ +A I+ D A + + A + E VSE TV RF + Sbjct: 8 DLLKRIQAGMPGFSKGQKLIANFIINHYDKAAYMTAAKLGEEVGVSESTVVRFANEIGFD 67 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVES--YTGKIFESAMATLDHVRHSLDKSAIN 119 G+P + L + + V R + + +S M + +D+ + N Sbjct: 68 GYPKLQKVLREMNKSKLTAVQRIEVTSSRINEGNILKSVLQSDMEKIKATLEEIDQESFN 127 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRF--NVPVVYSDDIVLQRMSCMNCSDGD 177 V + A+KI G+ SSA +A F NV +V++ + ++ S GD Sbjct: 128 NIVKSILNARKIYILGVRSSAPLASFLGFYFNLIFDNVRLVHTTSVSEMFEQIIHASRGD 187 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMP 236 VV+ IS +K + + A+ A V+A+T + +PLA+ A IT +D+ Sbjct: 188 VVIGISFPRYSKRTINAMRFAQNQGATVVAITDSLYSPLAKNADHVITA----RSDMASF 243 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 + S +A L+VI+ L + R ++ +R+++ E + ++ Sbjct: 244 VDSLVAPLSVINALIVAIGMSRKPHVQETFERLEKIWDEYKVYEKQ 289 >UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJG3_9BURK Length = 325 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 144/287 (50%), Gaps = 2/287 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I L +ERKVA +IL A +SI A+A +A VS TV RF +++ R Sbjct: 40 DIVARIAECAPELRSAERKVAALILDDLTGASRASIGALAQQAEVSIATVTRFAKAVGCR 99 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + KL LAQ+ A G ++ R+ D+ E ++F+ L H L ++ + A Sbjct: 100 DVRELKLRLAQAAAVGQRFLERD-AASDAPEPIATRVFDELQTALAHNHQLLRQAPLAEA 158 Query: 122 VDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 L A+ I FG+G S A+A + + R PV D +LQRM S VVV Sbjct: 159 AAALRNARMIYVFGMGGGSTALADEMRFRLVRLGRPVATYQDGLLQRMVASTVSRDCVVV 218 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S TGR +VE ++AR A V+A+T+ +PLAR A I + E IY P SR Sbjct: 219 ALSTTGRVPEMVENCKIARSYGATVVAVTAPASPLARLADWLIPIVAFETDFIYKPSSSR 278 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 A + +DVL T + +G + R+ L+R+K AL R L D Sbjct: 279 YAMMMALDVLVTELAVSQGDESRELLRRMKHALDAHRGGGDRQPLGD 325 >UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n=3 Tax=Listeria monocytogenes RepID=C8JWL0_LISMO Length = 273 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 130/277 (46%), Gaps = 7/277 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L I S LSKSE+KVA++IL++PD + SI +AL ANV E T+ RF R + Sbjct: 1 MDLLATISSYFPSLSKSEQKVAQLILSNPDEVENLSINDLALMANVGESTIVRFSRKIGL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF D K+ L + + + D ++ + L + +++ + + Sbjct: 61 TGFQDLKIALVKYQTSQKQNI------TDESNEAKDLVYRQFVDGLQDTKSFIEQEKLEQ 114 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A ++ +A+ + +G+SA +A N+ R V + D LQ + D+V+ Sbjct: 115 AAKMIHRAEHVYILSVGTSAFIAMQLSNRLKRLGKFVEFVPDGHLQSIYVTMVKKTDIVI 174 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS +G TK +++ +LA ++ A V+ L++ + +++ +++ E + Sbjct: 175 GISKSGNTKEVIQNIELASQSGAPVVTLSNFINSKISQMGDVSLVASSKEFLSDAGSFSA 234 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 ++QL ++D L + + + +AL + Sbjct: 235 EVSQLYLLDTLIKVLVDINPSSYHNIRSLTNKALVKR 271 >UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=Streptomyces RepID=B5HLI6_9ACTO Length = 317 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 118/281 (41%), Gaps = 6/281 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + K+++ +++S +VAE + A P ++ +A SE TV R R + G Sbjct: 35 LAAKVRTLGPSMTRSMHRVAEAVAADPAGCAALTVTGLAERTGTSEATVVRTARLLGYPG 94 Query: 63 FPDFKLHLAQSL----ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + D +L LA + P + ++ DD + K+ TL LD + + Sbjct: 95 YRDLRLALAGLAAQQQSGRAPAITTDIAVDDPIADVVAKLAYDEQQTLADTAAGLDTAQL 154 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 AV A++I +G+G+S VA D K R + D L + + GDV Sbjct: 155 GAAVAATASARRIDVYGVGASGLVAQDLTQKLLRIGLIAQAHSDPHLAVTNAVQLRSGDV 214 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDV-PEDTDIYMP 236 + I+H+G T +++E ++A E+ A +A+T + + A +T E Sbjct: 215 AIAITHSGATGDVIEPLRVAFEHGATTVAITGRPDGAVTQYADHVLTTSTARESELRPAA 274 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 M SR +QL V+D L G R L EAL Sbjct: 275 MSSRTSQLLVVDCLFVGVAQRTYETAAPALAASYEALAHRH 315 >UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus RepID=Q03CT7_LACC3 Length = 289 Score = 232 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 129/281 (45%), Gaps = 4/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ QS LS++E+K+ + ++A + S+ +A A S +V+R R + Sbjct: 1 MSVKGNYQSTRSELSETEKKIVDYVMAHSQAVLTMSVHDLAKAAGTSPASVSRAARRLQF 60 Query: 61 RGFPDFKLHLAQSLA-NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 G+ + K+ LA L + ++ + ++ ++ + K+ A +L ++++ ++ Sbjct: 61 SGYNELKMQLAADLKGDTNQSDDQEIQKNATLTTIKQKLLIDANQSLRETVDQINEANVD 120 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCS-DGDV 178 ++L+ Q+ ++ FG+G+S A + K+ R P +SDD+ L + + Sbjct: 121 TIINLIHQSDRLLVFGVGASYLAAQNIAQKWGRLGYPCHFSDDLNLFLPLAATADVEQTL 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVP-EDTDIYMP 236 IS++G + +V A+LA++ VI T G L + A ++I P E + + Sbjct: 181 CWFISNSGESPEVVLAAKLAKKAGLQVIVTTKLGKNSLTKYADVSIQTSQPMEARNRFAA 240 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 S Q +ID+L + R + + K A+ R Sbjct: 241 TQSLHTQFMLIDILYYAYVSRYYDAAKIATDQSKAAVTAYR 281 >UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=Rhizobiaceae RepID=A6UIG8_SINMW Length = 287 Score = 232 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 152/288 (52%), Gaps = 2/288 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++ +Q + LS+SE ++A+++L + A+++SI +A +A+VS PTV RFCR + Sbjct: 1 MDIFATLQEEKGRLSQSENRIADILLNDFEFAVNASIIELAGKADVSPPTVTRFCRRLGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F DFK+ LA++ G Y+ + I A L + SLD +AI R Sbjct: 61 ESFSDFKVQLARTPYVGMRYLKPEPKSQE-PGDVAQDIITKAQNALLLLHRSLDLAAIER 119 Query: 121 AVDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 A D L QA+ I FG G +S+ +A + N+ FR + + S D +Q M DV+ Sbjct: 120 AADQLAQAEMIYAFGSGGNSSMIAGEFQNRLFRLGMRITSSSDHSMQMMMAAAARPADVI 179 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 V S +GR LV LARE IALT +G+P+A+ A + + +D+PE +IY P + Sbjct: 180 VGSSFSGRNAELVRAFILAREAKVPTIALTQSGSPVAQAADITVPVDLPEGNNIYRPTST 239 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R+A L ++D++A+ R + L+R+K+ L R + D Sbjct: 240 RIAYLALLDIVASLVAYRVQPQATVTLRRIKQQLVVHRDGDDRQLMGD 287 >UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0W9_9CLOT Length = 310 Score = 232 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 66/281 (23%), Positives = 136/281 (48%), Gaps = 6/281 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I ++ LSKSE+KVA+ I A ++ +A EA VSEP++ RF +S+ G Sbjct: 31 LLFRIATKYMALSKSEKKVADFIKNFNGKAEKLTMKKVAKEAGVSEPSIMRFSKSIGLDG 90 Query: 63 FPDFKLHL----AQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 F + K L P ++N +D+++ GKI + ++ + S+ + Sbjct: 91 FNELKYCLMKTKKDDEGTMKPLHGFDINREDTIDMIPGKIVMTVENQINSMLESISLKSY 150 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + ++ + AK + + + +S + A+D K + V D LQ++S N + DV Sbjct: 151 SDMINCIINAKNVDIYSVENSVSSANDLATKLLYLGINVKMYTDSYLQKISAYNLTSEDV 210 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 + IS++G +K+ VE+ + A++ A + +T+ + + + A + + + + Sbjct: 211 AIGISYSGNSKDTVEMIKTAKKRGATTVVITNYKDSKIVKYADI-LICTSSDQMLYGDAI 269 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR QL + D++ G K+ + L + ++A++ + Sbjct: 270 FSRAIQLVINDMIYMGIIHSDYDKYIEILNKNEKAIRNRGY 310 >UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1Y9_BEUC1 Length = 307 Score = 232 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 119/288 (41%), Gaps = 6/288 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +++ L L S R+ AE +LA P ++ +I +A + S V+R CR + G Sbjct: 17 ILAELRRLLPDLPDSVRRTAERVLADPVASVAGTITDLAEASGTSPSAVSRLCRRLGVDG 76 Query: 63 FPDFKLHLAQSLANGTPY-----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 +P ++ + ++R + DS+E G + + + LD Sbjct: 77 YPALRIAVVADATASASSPWEIDISRTIGPTDSLEDVAGTLGAATSRAVHDTLAGLDLDV 136 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + + A+++ +G+ SA + + + R + D+ GD Sbjct: 137 LRDVAHAVAGARRVHLYGVSGSAVMTAELQLRLHRIGIATWSFADVHEGLTGAALLGPGD 196 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMP 236 V + +S+TG T +E+ + A DA+ +A+T + LA A + E T P Sbjct: 197 VAIAVSYTGETIETLEMLRAAGSRDALTVAVTGAPRSSLAAVADRILVTVTEETTFREGP 256 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 + +R ++LTV+++L + + L + A++ + + Sbjct: 257 LAARFSELTVVELLYLAVGQLTYERTTELLTQTALAVRRHQAGRTERK 304 >UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax=Gammaproteobacteria RepID=RPIR_ECOL6 Length = 296 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 125/269 (46%), Gaps = 1/269 (0%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 ++ + E ++++E ++ E +L + + +I +A VSE + + + + GF + Sbjct: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 Query: 67 KLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 + L + + + D++ + K+F + T+ + ++ I+RA Sbjct: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 QA++ +G G S A+ D +KF R V D + MS +GDVV++++H+G Sbjct: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 Query: 187 RTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLT 245 RT ++ +LA++N A +I +T S +P+A+ A I PE + +R+ QLT Sbjct: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 Query: 246 VIDVLATGFTLRRGAKFRDNLKRVKEALK 274 ++D + N+++ + Sbjct: 260 LLDAFFVSVAQLNIEQANINMQKTGAIVD 288 >UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2D0_9BACL Length = 284 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 2/274 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L ++++ LE L +SERK A+ IL + SI A+A +A S + R CRS+ Sbjct: 5 SVLTQMEAMLEQLPESERKAAQYILTASAEVSGLSIHAVADKAGTSAAAITRLCRSLGLS 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GFPD K+ L+ A ++ +++++ K +++ + + L I + Sbjct: 65 GFPDLKMRLSVDNAKPQRPGYYDIERGETIQNVIQKTVSNSLQAIQDMMLHLQPELIEQV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 VD +A I +G+G+SA VA DA K+ R D L + + G + + Sbjct: 125 VDSFREASVIHMYGVGASAIVAADAAQKWLRLGKQAFALQDEHLIAAALASAPPGALFMG 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLD-VPEDTDIYMPMVS 239 IS++G TK +++L ++A++ I L+ G +A A L + PE T S Sbjct: 185 ISYSGNTKEVLQLFRVAQKYGVRTIGLSRFGNHKVAELADLMLYTPQAPEATLRSGASSS 244 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 RLAQL +ID+L + + + L + EA Sbjct: 245 RLAQLVMIDILFFAYASTQYEETILRLSQTHEAT 278 >UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RDU7_9FIRM Length = 281 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 7/278 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M++L K++ LS SE +V IL + I S +A ++ S TV R C+ ++ Sbjct: 3 MSVLVKLRE-YHTLSNSENEVRMYILRNSKKVISMSTQELAAKSYTSPATVIRLCKRLEL 61 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +G+ + K+ LA + N + DS+ K+ + ++ +++ R LD Sbjct: 62 KGYSELKIQLASEIKAFETMNLDVVDQTTFKKGDSLTELIDKVTDISIHSIEETRLLLDY 121 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + + A I +G+G+S +A DA KF R + I QR+ +N Sbjct: 122 EVLLCVARQIMDASIIDLYGVGASNNIAFDAGYKFMRIGKSISCLSLIDRQRIQAINSDS 181 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 ++IS++G T ++E+A++ +N+ +++T S L + + E Sbjct: 182 SHFAIIISYSGETPEIIEIAKILEKNNVPAVSITGSIQNQLVNLVEYNLFVSSRESNFRN 241 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEA 272 +VSR + L ++D++ L + Sbjct: 242 GAIVSRTSTLYMLDLIYITCISLNYDDSAKRLGQTLTI 279 >UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=Shigella flexneri 2002017 RepID=D2AGN5_SHIF2 Length = 333 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 8/266 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L KI++ + +E+K+A+ + A S MA + +S+ ++ +F + + Sbjct: 68 MLYLTKIRNAESEFTGNEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLGA 127 Query: 61 RGFPDFKLHLAQSLANGTP-------YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSL 113 +GF + ++ L + +++ ++ DDS+E K+ L+ Sbjct: 128 QGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALF 187 Query: 114 DKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNC 173 D + + + ++++++A I GLG SA V D K + V D +Q Sbjct: 188 DYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQAL 247 Query: 174 SDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTD 232 GDV + IS++G K +V A+ AR+ A VIA+TS A +PL R A + E Sbjct: 248 KKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEW 307 Query: 233 IYMPMVSRLAQLTVIDVLATGFTLRR 258 M +R AQ +V D+L G + Sbjct: 308 RSSSMSTRTAQNSVTDLLFVGLVQHQ 333 >UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X148_ENTFA Length = 295 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 149/288 (51%), Gaps = 8/288 (2%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 ++I+ + +LS +E+K+++ + S ++ ++A E VS+ +V +F + + GF Sbjct: 8 QRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKKIGYSGFQ 67 Query: 65 DFKLHLAQSLANGTPYVNRN-------VNEDDSVESYTGKIFESAMATLDHVRHSLDKSA 117 +FK+ +A++ + N N ++ DD + K+ ++ + +L + L K Sbjct: 68 EFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNATQFLTKEL 127 Query: 118 INRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 ++ + L+ AK + FFG G S+ VA D+ +KF R N Y D +Q + D Sbjct: 128 LDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFVTKLTSED 187 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMP 236 V + SH+G+TK + LA+ ++ +A +I LT ++G+ LA + AI + E Sbjct: 188 CVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEEGLFRAES 247 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLN 284 + SR++ LTV+D+L T + D+LK++++ + ++ D L+ Sbjct: 248 LASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTDPHYLS 295 >UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MLD6_SALAR Length = 293 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 117/284 (41%), Gaps = 4/284 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ + + L L +++ K+A IL P + + +A E VSE T+ RFC+ + Sbjct: 7 NVRVYLANILGSLGETDAKIAGYILQQPGLVVQFPVKKLAQEIGVSEATIVRFCKKVGYG 66 Query: 62 GFPDFKLHLAQSLANGTP---YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G + K L + L + ++ DDS KI + + LD + Sbjct: 67 GLLNLKADLKRELLAENDLSLPSSPDIFLDDSRNDVAQKIALTIETSARETIGLLDMKIV 126 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 V+ A+++ F G G+S A +A +K R + D + N D+ Sbjct: 127 KPVVERFLSARRVMFVGFGASGLAALEARDKMNRLGIDSDAFTDRFTMTLKLANLKRDDL 186 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPM 237 VV SH+G T +V +LA++ A +A+T S +PL A + Sbjct: 187 VVAFSHSGETPEVVNAFRLAQKKGAYTLAITHSPHSPLNELANTFWLTSGEAGPMQGDSI 246 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 +R++QL +I+ L T T +KE L + R ++ Sbjct: 247 STRISQLFIIEFLCTEITRHNLRDSGMTGLSIKEILIKERIKRE 290 >UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BCAC Length = 283 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 70/269 (26%), Positives = 134/269 (49%), Gaps = 3/269 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++ + LS E++VAE I+A+ N SI ++A E VS T+ R C + +GF D Sbjct: 5 KLREARDSLSTKEKQVAEYIIANKKNMQSMSIQSLAQENKVSTTTILRLCHKLGYQGFSD 64 Query: 66 FKLHLAQSLANGT--PYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVD 123 K+ L S+ + + + +++ +DS+E+ K+ ++++ ++ +A A + Sbjct: 65 LKIDLISSINHKSYGTLLQEDIDINDSMETVNHKVGLIEKSSIEETCALVNLNAFKLANE 124 Query: 124 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLIS 183 L++++KKI +G GSS VA + + + V D +Q D+V++IS Sbjct: 125 LISKSKKIVIYGAGSSGLVAKEFEYQLIKIKKDVNCHLDYSIQFSIVNTLDQNDLVIVIS 184 Query: 184 HTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLA 242 H+G ++L LARE IA+T G + ++ A + E +P+ S+++ Sbjct: 185 HSGENHECIKLLTLARELKVPTIAITKMGQSSVSSLAETVLHTISTEHVSRLIPIRSKIS 244 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKRVKE 271 QLTVI++L T +++ + + Sbjct: 245 QLTVINMLITNLFIKQYDERIQKQISTRA 273 >UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales RepID=C5EPZ9_9FIRM Length = 295 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 78/285 (27%), Positives = 134/285 (47%), Gaps = 17/285 (5%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I+ L KSE+K A+ L SIAAMA A VS+PTV RF +++ GF +F Sbjct: 9 IKRIYASLRKSEQKAADYYLGYDGPVETMSIAAMARAAGVSQPTVMRFVKALGLEGFKEF 68 Query: 67 KLHLAQSLANGTPY---------------VNRNVNEDDSVESYTGKIFESAMATLDHVRH 111 K + ++ G ++ D E G++ +++ LD Sbjct: 69 KYQVLKASMGGNGSGMGEEEGGRSEEVLRYGYEISARDRPEEVPGRVVAQSVSYLDDALK 128 Query: 112 SLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCM 171 + S+I RA L+ A++IA + + +SA+VA D + K + +DI LQ +S Sbjct: 129 HISPSSIGRAAKLICGARQIAVYYVENSASVAGDLVTKLMYLGFNCIMYNDIYLQHISAG 188 Query: 172 NCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPED 230 N DV + IS++G +KN V++ +LA++ A IA+T+ + +A A + + + Sbjct: 189 NLDSRDVAIGISYSGSSKNTVDVMKLAKKKGAATIAITNFEHSLIAGHADI-LLCTSSQQ 247 Query: 231 TDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + SR++Q V+D++ G LR F + L ++ Sbjct: 248 LLYGNAIFSRMSQTAVVDMIYMGIILRDYGHFTEKLDESSRIIRR 292 >UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C842_9FIRM Length = 276 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 116/277 (41%), Gaps = 3/277 (1%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ I SE+K+A+ I+ P ++ +I +A N S+ +V+RF R Sbjct: 2 ILDTIHGHYNSFFDSEKKIADYIIQHPKEVVNMTIKQLAQACNTSQASVSRFARKCQMDS 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F K++LA+ N + ++ D + I + ++ L ++D + + Sbjct: 62 FHHLKVNLARDCVNEIEQKSNTISTSD-ISGSLETILSNKISELTATIRNIDVDQFSVIL 120 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ AK + +G++ VA D M KF + S Q + DVV+ I Sbjct: 121 SLIQNAKHVLVCAVGNTVPVALDCMFKFNEIGILTFTSTIWENQVSYALGLDSNDVVIAI 180 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S++G + ++ + + ++ I +T+ + +A+E I E + SR+ Sbjct: 181 SNSGESSQVLAVCKEMKKRGVPTIGITNNEDSVVAKECVYHIQTSTREKLFLNEFCFSRI 240 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + T+I++L T D + + +E + Sbjct: 241 SAATIIEILYLFLTNA-SDNSYDRISQCEELYASLKV 276 >UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=Lactobacillales RepID=D0RS60_9STRE Length = 277 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 113/281 (40%), Gaps = 11/281 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L I+S L+ E+K+A+ L++ S A++ VS P++ RF + Sbjct: 4 NILPVIESVYGSLTHLEKKIADYFLSAEALTADLSAQAVSQRLYVSVPSLTRFAKKCGFS 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G+ F +S + T + L+ +D+ R Sbjct: 64 GYRQFIFEFQESSSESKNV----------SRDLTRNVLSDYGELLNKTFSLIDEEQFLRV 113 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 D+L A ++ +G GSS VA + +F R + D + RM+ + + +V+ Sbjct: 114 GDMLNNAGRVYIYGQGSSGLVAREMEFRFMRLGMVCKAITDDHMIRMNRVMLNPDCLVIG 173 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGT-PLAREATLAITLDVPEDTDIYMPMVSR 240 IS +G TK + + Q A++ A + +TS + L ++ + + V + + + Sbjct: 174 ISISGETKIITQAIQNAKKVGAKTVLVTSNNSDDLRQQCDELVLVAVKKHLAQGNNISPQ 233 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 L V+D+ + AL+E++ DK+ Sbjct: 234 FPVLVVMDIFYAYYMDLDRDHRSQIFTNTLSALEENQEDKE 274 >UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEU1_PETMO Length = 269 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 130/278 (46%), Gaps = 11/278 (3%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 + KI+ L+ E++ A+ I+ P + IH SI ++ A SE T+ R + + G Sbjct: 2 VTSKIKGIYNSLTNKEKQAAQYIIERPGDVIHYSITELSNWAGTSETTIYRVLKKVGYSG 61 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 + FKL LA+ L+ T + + I+ + L + +D+ I A Sbjct: 62 YQKFKLELARELSTPTLDSKES-------KDLFDMIYNRTVNALTDILRQVDRDKITHAS 114 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +++ +KK+ F+ +G S +A DA KF D +Q + N DVV+ I Sbjct: 115 EIIMNSKKLLFYAVGRSFPIALDASLKFAALGFASTAYSDPHMQVIVASNLEKDDVVIAI 174 Query: 183 SHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+G ++ + AQ+A+E A I +T +PL++ L + E VSR+ Sbjct: 175 SHSGVIRDTYKSAQVAKEAGAFTIGMTAGVNSPLSKIVNLVLYTSA-EMPQESEFTVSRI 233 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 ++ ++++L + K +++ R+ +A+K +F+ Sbjct: 234 GEMFMVELLYNSVASKMSLKNKES--RISQAMKTKKFN 269 >UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=Deinococcus RepID=Q1J2N3_DEIGD Length = 290 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 2/248 (0%) Query: 20 KVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTP 79 +V + IL P+ + +IA ++ A S+ TV R + + G+ +FKL L+++LA + Sbjct: 28 RVIDQILMDPERFLSLTIAELSEAAGTSDATVVRLVQHLGFGGYQEFKLQLSRALAV-SR 86 Query: 80 YVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSS 139 + V D+ + KIF+S+ LD L+ A + AV +T A+ I G+G+S Sbjct: 87 KADLTVEPQDASVTILRKIFDSSNTALDDTLEHLNLEAFSAAVQAMTLARHIELIGMGAS 146 Query: 140 AAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLAR 199 VA + R + S D +C DV++ +S +G +V+ A+LAR Sbjct: 147 GVVALSGQYRGLRLGLSCRASTDPGTFLSTCSLLEPTDVLIAVSFSGTRPQVVQAARLAR 206 Query: 200 ENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRR 258 + A+V+ALT G TPL++ +T+ P D + +++ Q+ ++D L T + + Sbjct: 207 QAGAIVVALTGLGRTPLSKVVHHTLTVSAPGDRYRPEGLATQIPQVAILDALFTSLHVAQ 266 Query: 259 GAKFRDNL 266 + L Sbjct: 267 DPYLSERL 274 >UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AK74_SEBTE Length = 284 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 124/274 (45%), Gaps = 3/274 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++S L+KSE+K+A I+ + + + ++ + NV + TV RF + + F + Sbjct: 13 KLKSVYNDLTKSEKKIANFIMKNFEKTKTMTSYDISKKVNVGQATVIRFSKKLGYSSFNE 72 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 + + + + +N++ D + + KI + + ++ + Sbjct: 73 LINSINK--LDQEDILEKNISLGDDIATTNTKIANQYIDVIKLTLELNPVYVFEEVIEAI 130 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A++I G+G+SA V+ D +NK R + + D LQ N D+++LIS + Sbjct: 131 IAAERIVVLGIGNSAIVSTDFVNKLARVGMNAFTNLDTHLQFSMISNLGKNDLLILISDS 190 Query: 186 GRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G T+ ++E A+LA++N +I++T L + + + SR+ Q Sbjct: 191 GETREIIEAAKLAKQNKTRIISITKFTKNKLHAYSDFILKTASFDINLRLDATTSRITQF 250 Query: 245 TVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 T+ID++ +K+++ + A+K ++ Sbjct: 251 TIIDMIFINILKTDFSKYKEIITNSDNAVKLLKY 284 >UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID=C3RHA3_9MOLU Length = 288 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 131/282 (46%), Gaps = 5/282 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 +I++ L SE+KVA+ IL S+ +A E VS+PTV RF +++ F Sbjct: 8 RIKTIYNILRPSEKKVADYILNYCGKLEDLSMTLLAKEVAVSQPTVMRFVKAIGYDSFKQ 67 Query: 66 FKLHLAQSLANGTPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 FKL LA++ ++N DD + GKI +A + L++ SL + V Sbjct: 68 FKLELAKNYDKENNIDILYGFSINTDDKIMDLPGKIVATATSMLENALKSLSLVNYQKTV 127 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 L+ Q++ I+ + + +S VAHD M K V D LQ + N + + + I Sbjct: 128 ALINQSQHISIYAVENSMGVAHDLMTKLIYLGKSVTCHSDYYLQSIDASNLTRDSLAIGI 187 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMPMVSRL 241 S++G +KN VE+ ++A++ A IA+ + L R + ++ + + SR Sbjct: 188 SYSGNSKNTVEVLKIAKDAGAQTIAIVNFENTMLTRYGDIVLSTSNDQFLY-GDAIFSRT 246 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLL 283 AQ+ ++D++ G + + L +K + K+ L Sbjct: 247 AQIALVDMIYMGVIISDYDNYTKKLDHYSRLIKHRGYQKEEL 288 >UniRef50_P46117 Uncharacterized HTH-type transcriptional regulator in aarA 3'region n=5 Tax=Enterobacteriaceae RepID=YARA_PROST Length = 282 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 130/278 (46%), Gaps = 3/278 (1%) Query: 1 MNMLE-KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMD 59 M+ L K++S L +E+++A +L S DN + ++A +A A VS +V RF R M Sbjct: 3 MSTLTSKLESLLNRGKGTEQRLARFLLDSRDNFVAMNVAELAQAAGVSSASVIRFTRQMG 62 Query: 60 TRGFPDFKLH-LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 RG+ DFK+ L+ ++ ++N D E K + + ++ LD + + Sbjct: 63 YRGYSDFKVDYLSDEKQYKAESLSGSLNPYDDTEQIIAKSGQMFITAIEKSLELLDPNTM 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + + +AK+I FG+G+SA VA+D K R N ++S D+ +Q N D+ Sbjct: 123 DEIAQKIVEAKRIVLFGVGTSAIVAYDIFYKLIRVNKYALFSPDLHVQLSYSSNVDADDL 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLA-REATLAITLDVPEDTDIYMPM 237 V+ I+ G T ++ + +LA + I LT G A R A L + E + Sbjct: 183 VIAITAKGNTPDINHMLKLANKKGCSTIVLTRFGQDEAVRLADLVLPYFYDEQLFQTGVI 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 ++ Q+ V D L + L++ +EA+ + Sbjct: 243 TPQVLQMVVFDTLFFKYLTLTNEDVVLALQKEREAIIQ 280 >UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=Lactobacillus crispatus RepID=C2KD15_9LACO Length = 279 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 73/280 (26%), Positives = 136/280 (48%), Gaps = 6/280 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M L +Q++L L + ERK+A IL P ++I +A VS T+ RF R ++ Sbjct: 1 MTFLTDLQNRLPDLPQQERKIALFILQDPQFIQSANINQLASTIKVSNATITRFARRVNC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ LA + A+ + D+ ++ ++++ L ++ LD + + Sbjct: 61 SSFTDLKVKLAAAAASSQVN---TITNQDNSKTTAHQVYDFYNRVLSETQNKLDIKQLKK 117 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + L+ AK++ F+G+GSS + +A + R + + M+ S D+++ Sbjct: 118 IIQLIKSAKRVYFYGIGSSGYTSLEATQRLLRMGISAFAETESNNMFMTSSIISKDDLII 177 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS TG T +LV +LA++N A V+ALTS +PLA+ A + + + + + S Sbjct: 178 AISSTGSTDSLVRAIELAKKNKATVVALTSYDNSPLAQLADIVVGVQDTNYINDARFINS 237 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 + + + VIDV+ T K+ D + R ++ ++D Sbjct: 238 QFSIMYVIDVITTLLLKNN--KYHDRMTRTITSVLNEKYD 275 >UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y2D5_LEPCP Length = 616 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 140/266 (52%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ +++ L LS SER VA +L++P + SIA +A VS PTV RFCR+M +G Sbjct: 337 LLDDVRAALPRLSTSERLVAGDLLSAPRAWMSDSIARIADRCGVSTPTVMRFCRTMGFKG 396 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 DFKL L L+ T +R V D I ++++ L +R L A +AV Sbjct: 397 LADFKLRLGAGLSGSTKVAHRPVRAADPTAERMATILNNSISALIELRDRLHPQAFEQAV 456 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A++I +G+G++A A +A +KF R + VV D LQ ++ DV++++ Sbjct: 457 KLLANARRIEVYGVGAAALAAEEAQHKFGRLGLQVVARTDSQLQNVTAAFLGPDDVLLVL 516 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLA 242 S++G + E AR + VI + + LAR + + + +D PED +PMVSRL Sbjct: 517 SNSGAVDPVNEAVMRARRSGTRVIGMCPQRSDLARLSDVILPVDHPEDLQALVPMVSRLM 576 Query: 243 QLTVIDVLATGFTLRRGAKFRDNLKR 268 Q ++DVL T L+R L R Sbjct: 577 QTVIVDVLVTDLALQRRDHINAALVR 602 >UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCD92E Length = 288 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 120/285 (42%), Gaps = 8/285 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 +++LEKI S L +E+++A+ +L + + +++ +A S+ TV RFC+ Sbjct: 5 VSILEKIFSIYPVLFDAEKRLADYVLQNEAKVVDMTVSDLAAACGTSDATVVRFCKKCGC 64 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDD----SVESYTGKIFESAMATLDHVRHSLDKS 116 GF K+++A+ +A V ++ ++ IF S L +D + Sbjct: 65 NGFHHLKINMAKEMATKPSDGAPIVGSNELDCARMDVSLRNIFASKQEELRQTLAEIDPA 124 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 V+ + A+ I +G++ VA DA KF + + + + Sbjct: 125 VFRSVVERIRAARFIFCAAMGNTIPVAMDAAYKFNELGLTAISAPVWENMLAMMHTATPD 184 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDI-- 233 DV++ IS +G TK+L+ + AR A ++ +T+ + +AR + + E Sbjct: 185 DVLLAISASGETKDLMRIVSAARGRGAYIVLVTNQVHSSIARVSDRVLHAVSQERMFFRT 244 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 + +RL+ VI+ + + + ++ L E + Sbjct: 245 FSFSSTRLSMTAVIEAVYYMLLSVKRDSS-ALVDTHEQRLSEQKL 288 >UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, RpiR family n=15 Tax=Firmicutes RepID=Q71VW8_LISMF Length = 268 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 119/276 (43%), Gaps = 12/276 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +L +IQ L E+++A+ IL D + +I +A E S T+ RFCR + Sbjct: 1 MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ + + + +++ +D+ ++ + I Sbjct: 61 DSFVDLKMRV---------NTAATMVPSLGYDDLFEEVYSFYHKVIDNTVKLIEPAKIRE 111 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V + +AK++ G+GSS A + + R + V+ +D + ++ + D V+ Sbjct: 112 VVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIITSSITTKEDFVI 171 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G T LV ++A++N + V TS + + + + I + S Sbjct: 172 GISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANS 231 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + + + V+D++ L + +RDN+++ + + Sbjct: 232 QFSIMYVMDII--SMMLLQNESYRDNMEKTINTVTD 265 >UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAK0_9FIRM Length = 364 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 117/282 (41%), Gaps = 7/282 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ ++Q + E+ + I+ P+ I ++ +A E S T++RFC+ Sbjct: 81 MSFFLELQKNHSS-TPVEKSIINYIINHPNEVIEMTMEDLARETYTSRSTISRFCKKNGY 139 Query: 61 RGFPDFKLHLAQSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 GF K+ LA L + + + D+ S I ++ + Sbjct: 140 EGFNSLKMQLAIELNLFLKDEMSSSTSLLFEKGDNASSIIDNITSQDTYSIIETVRTNPV 199 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 I + D + + + F G+ S +A+DA +F R +P Y + Sbjct: 200 EHIEKLADKILNCRHVVFLGVQFSGIIAYDAHLRFSRLGIPCKYFNTECDILTYSYFADP 259 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIY 234 DVV++ S++G+T ++E A R + ++T + L + L + ++ +D + Sbjct: 260 QDVVIIFSYSGKTAVILEAADHIRGKGTFLASVTKNYNNELLEISDLHLYINSIDDPENN 319 Query: 235 MPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + + SR+A L ++D++ ++ F D L + + K+ Sbjct: 320 LSLSSRIAALCLVDMIYAVLVNKKSDNFYDKLMQTNKLYKKH 361 >UniRef50_P37767 Uncharacterized HTH-type transcriptional regulator yfhH n=149 Tax=Enterobacteriaceae RepID=YFHH_ECOLI Length = 282 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 127/280 (45%), Gaps = 5/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN L +I+ + + L++S++K+A+ +L PD A H S +A EA VS+ +V +F + + Sbjct: 1 MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY 60 Query: 61 RGFPDFKLHLAQSLANG----TPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 +GFP KL L+++LA+ + ++ + DD + K+ + A + + + Sbjct: 61 KGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEE 120 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 ++ V +L A++I G+G+S VA + K + D+ + S Sbjct: 121 KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPD 180 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 D+++ IS+TG + L A V+A+T L + A+ + E Sbjct: 181 DLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA 240 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 + + AQ + D+L + + ++ + +K+ Sbjct: 241 SISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKK 280 >UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FU45_9FIRM Length = 277 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 121/276 (43%), Gaps = 11/276 (3%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M +LE+I++ HLS E+ +A I+ + +I+ MA E VS T+ RFCR + Sbjct: 1 MGVLERIEANFVHLSPKEQLLATYIMQESPYFTNITISEMAKETGVSAATITRFCRKVGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 F D K+ L S + E + + + + Sbjct: 61 ESFVDLKIQLQASEGESASNHQN--------HDMFDTVSEFYNRIIQRTSELQSEYQLRQ 112 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + +L+QA +I +G+GSS A + + R +P D + +S DVV+ Sbjct: 113 LIQVLSQANRIMVYGMGSSGLTARELAIRLSRMGLPATSETDSHMMIISSTVTRSSDVVI 172 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 IS++G TK++++ A++N A+++A+TS G+ LA+ A + + + + + Sbjct: 173 AISNSGETKDVIDALGNAKQNGAILVAITSMKGSSLAKLADETLLVHNSRFVNSEFFVNT 232 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 +L +ID + + F N+++ + + Sbjct: 233 QLPIFFLIDAI--TLMMLENPVFSQNMQKTIQEITS 266 >UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK55_BACSK Length = 268 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 130/276 (47%), Gaps = 14/276 (5%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ML++IQ LS +E+++A+ ++++P+ + I +A + +VS T+ RFCR + Sbjct: 4 MLQQIQVNYHALSAAEKRIADYVMSAPEELANIHIKDLAAKCSVSVATITRFCRKVGAAN 63 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F +FK+ + S + ++ ++ A + R +++ I +A Sbjct: 64 FVEFKMSVRDS-----------IRTEEEGGELIAEMESIYKAIIGGSRELINQDDIVQAA 112 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 LL A +I +G+GSS + + R + V D M+ + DVV+ I Sbjct: 113 TLLENANRIEIYGIGSSGLSGQEMKFRLMRMGMRVDCHIDSHTMVMNASLLTAADVVLAI 172 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S++G T ++ E LA+EN A VI LT+ TPL+ A L + P+ + ++L Sbjct: 173 SNSGHTVDIQEAVALAKENGATVILLTNHEHTPLSEMADLLLLSFSPKPFYARGFLNAQL 232 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 + + V+D L + + + + ++ AL + + Sbjct: 233 SIVHVLD-LISLVLAQNEERAKAR-RKTLHALSQLK 266 >UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=Proteobacteria RepID=A9IGF4_BORPD Length = 307 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 149/287 (51%), Gaps = 4/287 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +I+S+ + LS +ERKVA+ IL A +++ +A +A VS T++RF RS+ Sbjct: 24 DIVYQIRSRRDALSATERKVADAILDDIAAAAGATVDQLADKAGVSIATISRFARSVGCD 83 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 D KL LAQ+ A G +++ + E+ + + +++ ATL ++ +A Sbjct: 84 DTRDLKLKLAQASAVGERFLDPSTPEEST---FYARLYADIEATLRAHLPRFSEALFEQA 140 Query: 122 VDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 ++ +A+ FG+G +SA ++ + ++ R V D VL RM + DVVV Sbjct: 141 AGIVREARMTYVFGMGGASAVLSQELQSRLVRLGYAVAAYSDAVLLRMVAATLDERDVVV 200 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ++S +G T ++ ++ ++ A ++ LT +PLA A + + + E IY P SR Sbjct: 201 VLSTSGLTPEILAGTRIVKQYGARIVTLTDPASPLAGLADVVLPIHTAETDFIYKPSSSR 260 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 A L ID+LAT L R ++ L+R+K AL E R L L D Sbjct: 261 YAMLLAIDILATELALARQEATQERLRRIKLALDEYRGGPNRLPLGD 307 >UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=Ralstonia RepID=B2UK47_RALPJ Length = 280 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 118/227 (51%), Gaps = 2/227 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ E+I++ LS +ER+VA+ +L P + +AA+A EA VS+PTV RFCRSM Sbjct: 16 DLRERIRAARPSLSPAERQVADWVLRQPGTVLSLPVAAIAREAGVSQPTVIRFCRSMGCH 75 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G DFKL LAQ N R +V ++ + + L +R D A++ A Sbjct: 76 GLSDFKLRLAQ--GNAAHDKPRGAAAPSNVPRSGTRVLQDTIDALAAMRDRFDPLALDAA 133 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V L+ A +I +G GSS VA DA KFFR+ +P D L MS GDVV+ Sbjct: 134 VALVDTAHRIDLYGFGSSGVVARDAQTKFFRYGIPANAYSDPYLVSMSLNVLQAGDVVIA 193 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVP 228 IS +G L + RE VIA+T+ G+PLA A + + DV Sbjct: 194 ISKSGALPELQTAVERVRELGVHVIAVTAPGSPLAALADVVLPADVD 240 >UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF8_9LACT Length = 283 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 127/277 (45%), Gaps = 1/277 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +I+S L+ L SERK+ E IL P+ I + + + + A + V R C + Sbjct: 5 NILGRIKSVLDDLPNSERKIGEYILTYPEETIKMTTSQLGIAAESNSTAVIRLCNRIGVN 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF K++L+ + + + ++++ + K+ +A +++ +++ I R Sbjct: 65 GFTKLKVNLSAEIVSVDESGYAEIEAEETIGTIKNKLLTNAFKSMEETISLMNEFDIERV 124 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 ++L+ A + +G+G+S +A + + K+ R V+ D + Sbjct: 125 IELIESASMVYVYGVGNSRIIAENMVQKWSRVGKIVICPTDNHQLVSMLGAAPKNALFFG 184 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS++G T+ ++EL +LA++ + LT G L +A I ++D S Sbjct: 185 ISNSGETREIIELIKLAKKCSLKTVGLTQFGQNSLTNKADYTIQTVKTIESDSQFISSSL 244 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 AQL IDVL F + + +K+ +E + + + Sbjct: 245 HAQLIAIDVLFYSFLSKNYVAGTERIKQSREEMNQYK 281 >UniRef50_A1HTD9 Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTD9_9FIRM Length = 282 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 6/283 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++++ IQ +S S +K+AE +L D A+ + + VSE TV RF +++ + Sbjct: 4 SLVKNIQEHYHGMSASHKKIAEYLLDHYDKAVFLTAKELGQTLGVSEATVIRFAVALNYK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNR-NVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G+P+ + L + N V R + D + K + ++ + + + + Sbjct: 64 GYPELQQALQDMVKNKITTVERLRLALLDGQTNLPHKALSTDISNIQLTMEEVTSADFEK 123 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AV+ + QA+ I L S+ A+ + + GD+V+ Sbjct: 124 AVNEIIQARNIYIVSLRSATALGYFLHFYLQLLLQNSRLIHGVGTFFEEIRPAGPGDLVI 183 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVS 239 IS T+ VE + AREN A V+A+T + +PLA + +T + S Sbjct: 184 GISFPRYTRQTVEGLKYARENGARVLAITDSLTSPLAPYSHHVLTARSQ----QISFIDS 239 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282 A L++I+ L R AK D L++++ + R Sbjct: 240 FAAPLSLINALILAVGARDSAKTADVLRQMEAVWESYRVYHSE 282 >UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escherichia coli O157:H7 str. EC4024 RepID=UPI00017F2FF2 Length = 285 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 121/277 (43%), Gaps = 4/277 (1%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 I +++ L+++E ++ + I + I SIA +A NV E ++ RFC+ + +G Sbjct: 9 TLINTRINELTQTEIRIYQFIKNNRMRFIDMSIAKLADAMNVGEASIIRFCKKLGYKGLS 68 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDD---SVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + K L +++ + D+ S+ ++ + ++ ++ A+ RA Sbjct: 69 ELKTTLRLETDTDDTLLSKVTSLDEQTNSMTGIAQQLANNNYFAINETLALQEEQALVRA 128 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 D L+ A ++ F+G+G SA A +F R V D ++ N DVVV Sbjct: 129 ADYLSNAGQVYFYGIGMSAISVLYAKYRFMRIMANVDALIDNHTMTLNSNNVGKKDVVVA 188 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 ISH+G T+++V+ + +E A+ I ++ + L++ A + + + Sbjct: 189 ISHSGETRDVVDALKRVKEKGAVTIVISKLQHSSLSQYADVVLLTGGTSNPYQSDSSTIT 248 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 AQ ++DVL + + + + +++ Sbjct: 249 AAQSFMVDVLFNALLFINRGGNVEKIISSLDIINKTK 285 >UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=Enterococcus RepID=C0X6G8_ENTFA Length = 283 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 131/281 (46%), Gaps = 4/281 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M + I+ + + SK +++A+ IL P + + +A + S +V RF + + Sbjct: 1 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF 60 Query: 61 RGFPDFKLHLA--QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 + + KL +A Q+ +NG ++ V DDSV++ K+ AT++ + +++DK A+ Sbjct: 61 DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 RA+ + +A+KI G+G+S+ ++ +KF R +++ D + + D+ Sbjct: 121 ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMPM 237 ++ +S++G TK + ++A+ A VI +TS + + + + E + Sbjct: 181 LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVRSLSDEVLLVPNNEHLIRVGAI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGA-KFRDNLKRVKEALKESR 277 S + + + DVL G + N+ + + + Sbjct: 241 SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLK 281 >UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=Bordetella bronchiseptica RepID=B3EUN5_BORBR Length = 303 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 148/281 (52%), Gaps = 1/281 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L+++Q + LS +++ V VIL P A+ +++ +A +A VS PT+ R CRS Sbjct: 7 NLLQQMQERSPELSPAQKMVVRVILDDPQAAVLATVEQLAQKAGVSMPTIVRTCRSFGFV 66 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 DF + LAQS A + ++R+V DD V + K+ +A+++L + LD +++ Sbjct: 67 SVRDFMVALAQSYAATSSLLHRSVLADDGVADVSSKVIHAAISSLSELDRDLDVVILDKV 126 Query: 122 VDLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + + QA++I + +G +S +AH+ ++ FR + D+ Q MS V Sbjct: 127 AERVAQAERIDCYSVGAASTFIAHELHSRLFRLGLRSNTFFDMHQQLMSASTLGAKGVAF 186 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +ISH GR +E A+ ARE+ A V+ALT GTPLA A L + + P+D + ++ Sbjct: 187 VISHVGRMPYTLEAARYAREHGATVVALTQPGTPLAAAADLVLAVSGPQDPLRRVGTETQ 246 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 LA L VI++L + G L+ K+ L++ D Sbjct: 247 LAHLVVIEILMVRLAQKLGPVAVHGLQGFKQLLQQHGLDSD 287 >UniRef50_A5VV40 Transcriptional regulator, RpiR family n=37 Tax=Rhizobiales RepID=A5VV40_BRUO2 Length = 305 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 151/288 (52%), Gaps = 2/288 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ ++ + SKS+R++A ++LA P A ++I+ +A A VSEPTV RFCR++ Sbjct: 18 DIITRLHVVAQEGSKSDRRLAGLVLADPHYASKAAISEIAARAGVSEPTVTRFCRALGCD 77 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVES-YTGKIFESAMATLDHVRHSLDKSAINR 120 G DFK LAQ+LA G Y+ + D ES + ++A+A + +D + + Sbjct: 78 GVRDFKFFLAQALAIGGQYLTAEIPARDVRESRIATAVTDAAIAAIQRAGDGVDMGVLMK 137 Query: 121 AVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 + L + G G S+ +A + N+ FR +PV D LQRM + V Sbjct: 138 VAERLAAGGPVLCLGSGGMSSMLATEMENRLFRLGIPVNAQVDGQLQRMYAAVTTHETTV 197 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S +G +++VE +AR+ A +A+T+AG+ LAR A + I ED +IY P + Sbjct: 198 LAFSVSGFARSVVEAVLVARQYGAETVAITAAGSDLARAADMLIPFQPNEDGNIYKPTSA 257 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 R L ++D++AT RG K ++L+R+K +L D L L D Sbjct: 258 RYGLLAILDMIATAAAEARGPKVLESLRRIKHSLNTLTIDDPRLPLGD 305 >UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=Lactococcus lactis subsp. lactis KF147 RepID=D2BPE4_LACLK Length = 273 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 144/279 (51%), Gaps = 7/279 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 MN+L++IQ ++ +SE+K+AE IL +P I IA +A +NVSE +++RFC+ ++ Sbjct: 1 MNILDQIQVNFQNFFESEKKIAEFILKNPKKVIDMPIALLARNSNVSEASISRFCKKLNL 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF K+ LA+ N VN++ S+ I + L +LD + Sbjct: 61 TGFHQLKIELAR----IQDNENIKVNKNTSLNELIKNISKIKTTELIAATDNLDIDNLQS 116 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 + ++T K F G++ VA DA +F + + V DD +Q +N D+++ Sbjct: 117 IIKIITNVKLTHFVASGNTIPVAEDASYRFNQLGITSVVFDDWQVQTAFTLNMRKEDLLI 176 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +IS++G +K+L++L +A+E +I++T+ +P+AR + +T + S Sbjct: 177 VISNSGESKSLIKLINIAKEKKIPIISITNHPDSPIARLSNFHLTSFSRDYFFHNDYYFS 236 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 RL+ + +I+++ L + +N+K ++ + E++ Sbjct: 237 RLSAMYLIELIF--LILSQDKSRLENIKLHEQIISEAKL 273 >UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBK7_9GAMM Length = 271 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 105/270 (38%), Positives = 169/270 (62%), Gaps = 1/270 (0%) Query: 10 QLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLH 69 L LSK+E +A ILA PD A++S+ A +A A VS+P ++RFCR++ FPDFK+ Sbjct: 1 MLPSLSKAESSIARAILADPDAAVNSTTADLARIAAVSDPMISRFCRTLGCSSFPDFKVR 60 Query: 70 LAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAK 129 LA+SL + +++ V++ D Y K + A L+++R L + I + V L ++K Sbjct: 61 LAKSLVSKASFISEAVSKGDDAALYIEKRINANQAALEYIRSKLKPAIIEQTVAALGRSK 120 Query: 130 KIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTK 189 +I FG+G +AA+A DA +K FR +P V +D ++QRM+ + VV++IS TGRT+ Sbjct: 121 RIEIFGMGGAAAIAKDAQHKLFRLGIPTVAYEDHLMQRMAAAAADENTVVLVISFTGRTR 180 Query: 190 NLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVP-EDTDIYMPMVSRLAQLTVID 248 ++E+A +A+ + A +IA+T+ +PLA+ A + IT EDT IY+PM +R+ LT+ID Sbjct: 181 AMIEIADIAKNSQATLIAITNPKSPLAKLADITITSGDEIEDTTIYVPMTTRIIILTIID 240 Query: 249 VLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +LATG L +G + LK +K +L ++ Sbjct: 241 ILATGLALTQGPAIDEKLKTIKHSLDNTKV 270 >UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=Alphaproteobacteria RepID=Q28KP3_JANSC Length = 306 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 4/246 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +Q+QL LS +R++A+ IL PD S +A A S+ +V +FC+ + Sbjct: 27 SILTIMQAQLPTLSAGDRQIADTILGDPDRMARLSSGELARAAGRSQSSVVKFCQKLGFS 86 Query: 62 GFPDFKLHLAQSLANGTPY---VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+ D +L + ++ A V+ ++ D K+ S + L + Sbjct: 87 GYQDLRLAVTRAAATQKAPNDAVHSSIEVSDDASMTAQKLLASKIHALQETLSINPAKNL 146 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + A D L A ++ G+G+S+ VA D + K + + V++ D +Q + DV Sbjct: 147 DAARDALNGAARVQLSGVGASSLVARDFVYKLQKLGISVLFDADSHIQMAHSATLTPDDV 206 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 +V +S +G + + +A+ A + A +I +T PLA A A+ ED + Sbjct: 207 LVSLSQSGFSLETLRIAEAAAKRGATIITVTGLHPNPLADVADKALCTVTDEDQVRSSAI 266 Query: 238 VSRLAQ 243 SR AQ Sbjct: 267 TSRDAQ 272 >UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016945F6 Length = 248 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 5/240 (2%) Query: 40 MALEANVSEPTVNRFCRSMDTRGFPDFKL----HLAQSLANGTPYVNRNVNEDDSVESYT 95 +A A VSE T+ R RS++ +G+ + KL LAQSL + + ++ D S +S Sbjct: 3 LAELAEVSEATIVRLSRSLNLKGYQELKLRIAADLAQSLNSNLAESYQEIHMDASSQSLV 62 Query: 96 GKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNV 155 I + M ++ L+ ++RA+++L A+KI FG+G+SA +A D K R N Sbjct: 63 ESISHNNMRSIQDTMSVLNIKELDRAIEVLGGARKITLFGIGASAVIAQDFKQKLTRINR 122 Query: 156 PVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTP 214 + D Q N + D V+ IS++G T++++ Q A+E A +I+LT P Sbjct: 123 WCEAAYDFDSQATLAANLQEKDAVLGISYSGNTQDILLAMQAAKERGATLISLTKFGHNP 182 Query: 215 LAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 +A +A + + E + M SR+AQL VID+L G + + L+ ++A+K Sbjct: 183 VAEQAHIRLFTSSLEKSIRSGAMASRIAQLNVIDILYVGIARQNYEENILALENTRKAVK 242 >UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=Ralstonia pickettii RepID=B2UF98_RALPJ Length = 287 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 148/280 (52%), Gaps = 1/280 (0%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +++QL LS +++ VA +IL +P+ ++ S+ +A+ A VS PT+ R C+++ G Sbjct: 8 LLNALRAQLPALSPAQQGVARLILDAPELSLEQSVETLAVRAGVSMPTIVRMCQALGFEG 67 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 +FK LA LA+ P + +V D K+ + A L +R SL + ++ A Sbjct: 68 LREFKATLAAELAHAQPTLPGHVGRADPPALVASKVIDGATRALAKLRESLSTTQVDAAA 127 Query: 123 DLLTQAKKIAFFGLG-SSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + + +A+++ + G +S+ +A+D + R + D LQ +S DVVV Sbjct: 128 ERIARARRVDCYAAGAASSFMANDMQARLMRLGLASNAYFDAHLQLVSAAMLGASDVVVA 187 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH GR L+E A E A VIA+T AGTPLA A +A+T+DVPED + + + L Sbjct: 188 FSHVGRMPYLLESIAYAAEQGACVIAITQAGTPLAERAQIALTVDVPEDAVMRVGTEAYL 247 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQ 281 LTVI++L T RR R ++ ++ L E D+ Sbjct: 248 VHLTVIEILMTCVAQRRDEMVRSRMRAIQRLLTERSVDRP 287 >UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XVK6_9LACO Length = 280 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 11/274 (4%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 E++Q+ +L + E+KVA V L P+ +I +A +A V TV+RF + + + F Sbjct: 2 EQVQNLFINLPRQEKKVARVTLQKPELVRRMNITELANQAGVGVATVSRFTKRVGCKNFA 61 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 DFKL L +D I L + + +A +L Sbjct: 62 DFKLALVTPDTMQRESEQNVSTPND--------IHNYYQKILAETMAMVSTKQLRQAANL 113 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + AK++ FG+GSS A + + R P + + ++ D D+V+ +S Sbjct: 114 IHGAKRVYVFGIGSSGYNAQEFAQRLMRMGKPAFAMTESNMMTIASATMQDNDIVIALSV 173 Query: 185 TGRTKNLVELAQLARENDAMVIALTSAGTP-LAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G T + + +R+N A +IA+T+ L + + L + E Y + S+ A Sbjct: 174 SGSTPEVCSAVRDSRKNGATIIAVTAFKNSLLGKMSDLLFQIKSTELVGDYDFINSQFAV 233 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 VID+L FR + + EA+ ++ Sbjct: 234 TYVIDMLTQMLLQ--FTDFRATMNKTVEAILVTK 265 >UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Q9_9CLOT Length = 287 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 130/278 (46%), Gaps = 4/278 (1%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANV-SEPTVNRFCRSMDTRG 62 L KI L+K ++++A+ IL +P ++ SI + ++ SE +V +F R + G Sbjct: 11 LAKISELYPQLTKGQKQLADYILKNPSEVVNKSITDLISHTSLKSEASVVKFYRLLGFDG 70 Query: 63 FPDFKLHLAQSLANGTPY-VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F FK+ LAQ L N T Y ++ DD K+F AM++L + A Sbjct: 71 FKSFKIKLAQELVNRTFYHSESDITIDDEPTEIKKKVFLGAMSSLSK-NADIAAGECMDA 129 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 LL+ AK+I G G+SA++ A + + V + D + + GDV++ Sbjct: 130 QKLLSSAKRIIILGHGASASICQYAFFRLTELGLNCVCNQDAHMNAAILTHPRPGDVILC 189 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSR 240 +S +G T +L + ++A + I +T G+ +AR + + ++ E + + SR Sbjct: 190 VSQSGETADLYKQIEMAYQRRIPAILITGAPGSSIARLSQVILSTVSEERNILTDALNSR 249 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 ++Q +ID L + ++ + L+ + K+ + Sbjct: 250 VSQFCLIDALFSMISIANANEMLPRLQDTRNTFKKYKL 287 >UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAC9_9ACTN Length = 270 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 126/278 (45%), Gaps = 13/278 (4%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDN-AIHSSIAAMALEANVSEPTVNRFCRSMD 59 M+++ KI+S L +K+E +A IL ++ + ++ E V E T+ RFCR + Sbjct: 1 MSIIGKIESCLPSFTKTETIIARFILDHREDGVEQYLLGDLSRELGVGEATIVRFCRKLG 60 Query: 60 TRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF + K L+ T + G+I + ++++ + I+ Sbjct: 61 LGGFTELKFLLSVENEEHTAARENS-----------GEIKDILISSIKMTDSMVSSKDIS 109 Query: 120 RAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVV 179 VDL A ++ FFG+G S A ++ FRF + Q M C + ++ Sbjct: 110 DVVDLAGAASEVFFFGIGMSGLSASMGESRLFRFGKRTKAITEAHAQNMQASLCDENSLI 169 Query: 180 VLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMV 238 V +S +G T +L+E LA+E+ A V+A+TS + LA A + + Sbjct: 170 VAVSISGETIDLIEAVSLAKESGAKVVAITSYLRSTLAELADYVLLSFGKPNYINAGAFS 229 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 + ++QL ++D++ + + LR A+ + KR+ ++ Sbjct: 230 TVVSQLYILDLITSEYALRFSAEAARSKKRIARSIINK 267 >UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VMT8_LACPJ Length = 282 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 9/281 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSM--- 58 ++L I ++LE+ SK+E+K+ IL + I S A +A VS TV RF +++ Sbjct: 3 SVLFTIHNRLENFSKAEQKIGRYILDHTNAVIKMSTAELAAATGVSTATVARFGKTLIPD 62 Query: 59 DTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 G+P KL L+ + + +N DS+++ K+ T+D SLD +A+ Sbjct: 63 G--GYPALKLRLSAE-STVDQTLYDEINPKDSLDAIKSKLALRITHTIDETNRSLDDAAL 119 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 A L+ + +GLG+S VA D KF R V++S D L + V Sbjct: 120 QAASQLIADKASVYVYGLGASNVVATDFEQKFIRIGKAVIHSQDPHLLAVGMTTQRQNVV 179 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTD--IYM 235 ++LIS++G + LA LA + VI L+ +A + L + A + + D E+ Sbjct: 180 LLLISNSGEKSESIRLANLAHSINVPVIVLSRNATSTLGKLADIILINDDSEENQTARAA 239 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S +AQL V+D+L F + L +EA+KE+ Sbjct: 240 ATTSLMAQLYVVDLLYYTFITNDYERHIKQLVASREAIKEN 280 >UniRef50_C3RI81 Sugar isomerase n=1 Tax=Mollicutes bacterium D7 RepID=C3RI81_9MOLU Length = 296 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 8/290 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M ++EK+ + E +S E +A IL S +A S TV R C+ +D Sbjct: 1 MLIIEKL-NLKEKMSDGEESIAAFILTLGKELHKYSTRNIAEATLTSPATVIRLCKKLDF 59 Query: 61 RGFPDFKLHLAQSL-----ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDK 115 +GF DFK + + G N N +D++ KI T+ L Sbjct: 60 KGFDDFKEQFLKEINYLDQQYGKVDANFPFNRNDTMMKTAHKISHLYEDTVTDTMTLLHH 119 Query: 116 SAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSD 175 + +A+ LL + I F G++ +A K + VV S+++ Q Sbjct: 120 DDLQKALRLLKNSNSIHIFSTGTALNLAESFKEKMLKIGKNVVISNNLNYQLYEVSCIPK 179 Query: 176 GDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTD-I 233 GD+ ++IS++G T N +++AQ + N +IA+TS G LA+ A+ +T+ E Sbjct: 180 GDIAIIISYSGETINTIKIAQTCKNNKIPIIAITSFGENTLAKLASCKLTISTKESLYHN 239 Query: 234 YMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLL 283 + LA ++D+L + F L + DN ++ + L+ R + Sbjct: 240 LGDFSTHLATHLMLDILYSVFFLEDYDQNYDNKIKITKDLEALRSSTNPI 289 >UniRef50_C5D4L1 Transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. WCH70 RepID=C5D4L1_GEOSW Length = 282 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 121/284 (42%), Gaps = 9/284 (3%) Query: 1 MN-MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMD 59 MN + I +L +S+++RK+A+ +L +P+ ++ +A A VSE TV RF + Sbjct: 1 MNEVYRLIAEKLPEMSRAQRKIAKYVLNNPEAVPFFTVGKLAKMAGVSEATVVRFATFLG 60 Query: 60 TRGFPDFKLHLAQSLANGTPYVNR---NVNEDDSVESYTGKIFESAMATLDHVRHSLDKS 116 G+P+++ + +S+ V R + DS + ++F+ + + + +D Sbjct: 61 FSGYPEWQQAMQESMKRQLTTVERLKISEEVYDSEDKSIFEMFQEDIERIKAMSVQIDMD 120 Query: 117 AINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDG 176 +AV +T AK+I S+ ++ F + + Sbjct: 121 LFYQAVQYITDAKRIFIIANRSAVSLGLFLEFYFDILFENAELIRNPHGISEKLFRLNKD 180 Query: 177 DVVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYM 235 DVV+ +S TK+ +E A++ A +I +T +PL + + + Sbjct: 181 DVVIGLSFARYTKSTIEAVAFAKDRGAKIIVITDHLLSPLVSYGDVTLCAPTE----MPS 236 Query: 236 PMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFD 279 + S +A L++++ L T R+ ++ +L ++E + Sbjct: 237 FIDSFVAPLSLVNALITEVGRRKRSEVEKHLSDLEEIWERFHIF 280 >UniRef50_Q38V38 Putative transcriptional regulator with a sugarisomerase domain, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38V38_LACSS Length = 276 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 126/281 (44%), Gaps = 6/281 (2%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M ++E I+ Q LS E+KVA ++ + I +A E VS T++RF R + Sbjct: 1 MAIIEHIKQQYSFLSPQEQKVALAVIQKGASIQRIGIDELAAELQVSNSTISRFVRKIGC 60 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 + F DFKL ++ V V+ + +I++ + + + ++ +++ Sbjct: 61 QNFVDFKLQFSEGPQPTMTGVQGQVDHESQTSV---EIYQFYQDVITKTQARIKQADLDQ 117 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 V + ++++ +GLGSS + + R + + + M+ + D+V+ Sbjct: 118 LVSWIKTSQQLFIYGLGSSGYTGAEFGQRLTRMGIQATVVTESHMMLMTSRIINKTDLVI 177 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 +S++G T+ + + Q AREN A A+TS +PLA + L + ++ + S Sbjct: 178 GLSNSGNTEEVNQAVQNARENGAKTAAITSGTDSPLAAASDLTLFVEDSIGFASARFVNS 237 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDK 280 + A VID+LA ++ +K+ + + + K Sbjct: 238 QFALTYVIDILAMLLLED--EQYNWRMKQTVDTIMHHKLKK 276 >UniRef50_A6BIK8 Putative uncharacterized protein n=9 Tax=Clostridiales RepID=A6BIK8_9FIRM Length = 315 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 10/293 (3%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L+ I + SK ++K+A+ I D A + A M E VSE TV RF ++ G Sbjct: 18 LLKMIDERYHKFSKGQKKLADFIREDYDKAAFLTAAKMGGEVGVSESTVVRFATALGYDG 77 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNE--DDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 +P+F+ L + + + R S + S + + ++D A Sbjct: 78 YPEFQKALGELVRMKLNSIQRMEVTYGRISQGEILTSVLHSDIEKIKLTMEAIDHEAFEM 137 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRF--NVPVVYSDDIVLQRMSCMNCSDGDV 178 AVD + +AK+I G+ S + +A NV V ++ + S+ DV Sbjct: 138 AVDTILKAKRIYVIGIRSCSPLASFLSFYLNLICENVTAVNTNSSSEIFEQLIRVSEDDV 197 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPM 237 V+ IS + ++ + A A VI LT + +P+ ++ + +D+ + Sbjct: 198 VIGISFPRYSMRTLKALEFASNRKATVITLTDSVHSPMTLYSSCNLIA----RSDMASIV 253 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR-FDKQLLNLSDDR 289 S +A L+VI+ L +++ + L+ +++ E + + K LN+ DDR Sbjct: 254 DSLVAPLSVINALVVALCMKKQKEVITTLETLEQIWDEYQVYSKDELNMVDDR 306 >UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FC5_PEDPA Length = 280 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 6/278 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L + + E S+SE+KVA ++ P I + ++ VS TV R + + Sbjct: 3 NILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKICKS 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G P K+ +A + + VN D ++ K+ + L K+ + +A Sbjct: 63 GLPGLKIQVASEIKV-DDSLYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKKA 121 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 D++ QA I FG+G+S VA D KF R V+ + D M+ V+++ Sbjct: 122 TDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQTLDTH--LMAVGLAKPNSVLIV 179 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDV--PEDTDIYMPMV 238 +S +G TK + ++A + +IA+T + +A+ +T+ +T D Sbjct: 180 VSDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATT 239 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S LAQL V+D+L + + + + L + K + E+ Sbjct: 240 SLLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAEN 277 >UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HWK5_9FIRM Length = 297 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 144/276 (52%), Gaps = 5/276 (1%) Query: 7 IQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDF 66 I S+ +K+E AE L D ++ +I+ +A E S ++ +F + + +G+ DF Sbjct: 21 ILSKKSTFTKTENFYAEYFLKLDDEILNKTISNVAEETESSTASIFKFIKKLGFKGYKDF 80 Query: 67 KLHLAQSLANGTPY----VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 +L+LA ++ + +VNE+DS + KI + ++ ++ + + Sbjct: 81 QLNLATNINKNSDDSLLTAITSVNENDSPDEIANKIMAFNIQSMYTLKEDIKNIPFESCL 140 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +L+ ++KKI FFG+G SA +A+D+ +KF R V Y D +Q +C D + + Sbjct: 141 NLIKKSKKIHFFGMGGSATIAYDSYHKFLRTKYMVNYISDSHMQLSACTKMDQNDCIFVF 200 Query: 183 SHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+GRT ++E++++A++N A +IALT + + + + + A+ L E + +R+ Sbjct: 201 SHSGRTLEVIEVSKVAKKNKAKIIALTGNPKSEMVKISDEAMILPSIESEHGTESLNARI 260 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 LTV+D+L + + +K+ +ALK ++ Sbjct: 261 LYLTVMDILLISLMYDNVEENKKYMKKRLDALKVTK 296 >UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=Rhodobacteraceae RepID=Q1GCY7_SILST Length = 300 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 147/289 (50%), Gaps = 2/289 (0%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 ++++ ++ + E+KVA+ + A + + +IA +A VS PTV RFCRSM Sbjct: 12 VDLISNLRELNGSFAAREQKVADFVSAHLEEISNMTIAELAGAVGVSTPTVVRFCRSMGC 71 Query: 61 RGFPDFKLHLAQSLANGTPYVNRNVNE-DDSVESYTGKIFESAMATLDHVRHSLDKSAIN 119 GF +FKL LAQ+LA Y+ + E + ++ + AT++ +R L ++ Sbjct: 72 DGFREFKLRLAQNLAVSLQYLAPSQREVPEGGAGAVDQVLGALYATVNVMRQQLVPERLD 131 Query: 120 RAVDLLTQAKKIAFFGLGS-SAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 A L A +I G+G S VA +A N+ FR +P V D L +M GDV Sbjct: 132 AAAAALAAAGQIVVAGVGGGSTMVAQEAANRMFRLGIPAVSISDSYLLQMRAATLVKGDV 191 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMV 238 ++L+S +G +V A +A A V+A+ G+ LA+EAT+AI D+PED DI P Sbjct: 192 LLLVSASGAADEIVSAAAIAGGYGATVVAIARPGSRLAQEATVAIEADLPEDPDILKPTA 251 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSD 287 SR A L ++D LA R A +NL+R++ +L L D Sbjct: 252 SRYAHLVIVDALAMSVAQARTAATTENLRRIRASLTAYHGRTGPQPLGD 300 >UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax=Staphylococcus RepID=A5IV96_STAA9 Length = 290 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 132/287 (45%), Gaps = 4/287 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+L +I SQ +++K+E+K+A+ IL SP I +A ++S +V RF + + Sbjct: 3 NVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSKKITDG 62 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF D K+++++ + + N + ++S ES K+ L+H + L+ I++ Sbjct: 63 GFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDKTIDQI 122 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L +++ I +G G+S VA D K R + + + + + D V+L Sbjct: 123 CHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSNDSVIL 182 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLD-VPEDTDIYMPMVS 239 I++ G + + ++ + +I +TS P+A+ + + +T E+ S Sbjct: 183 ITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHMGATTS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLS 286 AQ+ ID+L + D + + K AL R K L N++ Sbjct: 243 LFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYR--KHLSNIN 287 >UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAG5_FUSMR Length = 283 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 123/277 (44%), Gaps = 2/277 (0%) Query: 4 LEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGF 63 L + L S +E+K+A IL + I +I M+ + S +++RF + + F Sbjct: 7 LFLLDQLLPSFSPAEQKIALFILENTFAVIDMTIEDMSEKIGTSVASISRFTKKIGFENF 66 Query: 64 PDFKLHLAQS-LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 KL +A+ + + ++ NVN++ + + ++ A L+ + + Sbjct: 67 YLLKLGIAKEFVNSSNKTISLNVNKNSNATDIYTNVAKTNSAILEESIEYFNTDKMEEIS 126 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 +++ A I F +G+S +A ++ KF R + +D Q + D DV ++ Sbjct: 127 EIILNANHIYLFAMGASGILAKESWYKFIRLGLKCSMIEDFHSQLLQASILDDTDVALIF 186 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRL 241 SH+G K+++ L ++ E A I +T+ TP ++ + + + SR+ Sbjct: 187 SHSGINKDVLTLLEIINETPAYSIGITNYARTPFSQSVDICLFFSENSTPMDKVGFSSRI 246 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 QL +I+ L +L+ G K + +R K+ K+ Sbjct: 247 PQLIIIESLYRILSLKLGKKSKICQERYKQIFKKRSI 283 >UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5E8_9LACT Length = 268 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 115/274 (41%), Gaps = 14/274 (5%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++ +I LSK E++VA IL + +I ++ S T++RFC + R Sbjct: 6 DLSNRINQNYSLLSKKEKQVAAFILEHKKDIESWNIKDLSRLTETSNATISRFCAKLSYR 65 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 F +FK + Q L+ + V KI + ++ IN Sbjct: 66 NFNEFKTFVTQELSGNPTPLQVPV-----------KIASYYTQLIHSASQLIETKQINDF 114 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 V+ + + KI G+G+S A + + R + V D + M + D+++ Sbjct: 115 VEAIHLSNKILICGVGNSGLSAMELKYRLVRMGLIVDVVTDPHMMLMDAVLLKKYDLMIA 174 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSR 240 IS+ G+T+ +++ +A++ DA V +T+ TPL + A + + S+ Sbjct: 175 ISNYGQTQAVIDACTIAKKEDATVFVITNQNHTPLTKIADQVLFASGRTSIPDEQFINSQ 234 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALK 274 L ++DVL + L +++N ++ A+ Sbjct: 235 LPIHFILDVL--CYVLLENKSYKENRRKTLTAID 266 >UniRef50_C3RM35 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RM35_9MOLU Length = 284 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 111/278 (39%), Gaps = 19/278 (6%) Query: 12 EHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLA 71 + S ER + + +L + + ++ S +A S ++ RFCR ++ G+ DFK+ LA Sbjct: 3 NNFSSVERILGKYVLENGEKVLNMSTKELAKATFTSPASIVRFCRKLEYEGYNDFKIALA 62 Query: 72 QSLA-----NGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLT 126 L N N DSV + I + ++D +LD + V ++T Sbjct: 63 AQLQYSRLSNDDINANYPFKGTDSVYTVASNIANLSKESIDITMKNLDLEELRLVVLMIT 122 Query: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186 +AK I +G+ +A D K FR V S I Q + + +LIS++G Sbjct: 123 KAKVIDIYGVSGPLRIASDFQYKMFRIGKDVRISQMINEQLFQAAQSTSEHLAILISYSG 182 Query: 187 RTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQL- 244 T+ ++E A++ IA+TS G L + + L+ E + S++A Sbjct: 183 ETEEVIEAAKILYRRKIPAIAITSFGENRLVKYTQRVLYLNSSE------FIYSKIATFS 236 Query: 245 ------TVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 ++D++ + + + Sbjct: 237 STLSLHLLLDIIYGCVFSKNYEDNLNYKIETDNLIDHR 274 >UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCR9_9FIRM Length = 289 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 141/279 (50%), Gaps = 6/279 (2%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 +L +I+S + LSKSE+K+ IL P + S +A++ ++SEPT+ RF R + +G Sbjct: 6 ILTRIESLMPFLSKSEQKLGNYILTHPKDVTDMSTSALSQACDISEPTLIRFTRRLGFQG 65 Query: 63 FPDFKLHLAQS-LANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 + DFKLHL+ + ++N VN +DS K+ + +L+ ++LD + + A Sbjct: 66 YKDFKLHLSANFISNQIDSTPVKVNLNDSAIEIYRKLASFTINSLNSTLNTLDANDLENA 125 Query: 122 VDLLTQA----KKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGD 177 + + A +KI G+G+S + H+ K R N+ ++ +DI L+ +C N D Sbjct: 126 TNYIYVAAKQNRKIFLSGMGASTVLIHEFQIKMMRLNIQTIFFEDIHLRLEACANLKKND 185 Query: 178 VVVLISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMP 236 + + + G +K EL +A E A +I +T + +A +A +A+ + E+ Sbjct: 186 LFICFTTLGASKENYELIDIAHERKAKIIVITQFGNSQIAEKADIALYTSIIENNLRLAS 245 Query: 237 MVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKE 275 S + Q VIDVL + A +++K +E K+ Sbjct: 246 QTSIILQSMVIDVLFLTIACKDYASITNSVKDFREKFKQ 284 >UniRef50_UPI000196B715 hypothetical protein CATMIT_00151 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B715 Length = 282 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 130/281 (46%), Gaps = 6/281 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N++++I S +H SE+K+A+ I+ ++ ++ ++ + SE +V+RFC+ + + Sbjct: 4 NVIDEIYSSYDHFFDSEKKIAKYIMHHTSEVVNMTVGDLSQASGASEASVSRFCKRIGLK 63 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESY---TGKIFESAMATLDHVRHSLDKSAI 118 GF K+ LAQ L P N ++ S+ I + + L + + + Sbjct: 64 GFHHLKISLAQELVE-IPSCNTTISNRISITDVNNSLDSILANKVEELTQTITMMKSNKL 122 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 + +D + +++ I F +G++ VA D KF + +P S + + +N S D+ Sbjct: 123 DEILDCILKSRHIYFVAVGNTVPVALDGCFKFNQIGIPSSTSSILETELGMILNVSKEDM 182 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 V+ IS++G + ++ + A A +++T++ + +A E+ IT E + Sbjct: 183 VIAISNSGESSGVLTAIKEAHNQKATTLSITNSDKSSIALESDYHITTATREKVYLEGYC 242 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 SR++ VI++L T + + ++ + + Sbjct: 243 FSRVSATAVIEILYLFLTT-MKEDAHEKSAQHEDLIAGDKI 282 >UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus RepID=C2KAY2_9LACO Length = 281 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 2/279 (0%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 N+ KI +L+K+ + +A+V P ++ ++ + S +V RFCR++ + Sbjct: 3 NLANKISDVYPNLNKTSKLIADVYFKEPRIFLNKNLQELGTITQTSGASVVRFCRNLGFK 62 Query: 62 GFPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 GF DF++ AQ + N V+ +N +D S K+ S + + ++D +++ Sbjct: 63 GFKDFQIACAQEMPNKQDAMVDTIINTNDEPTSVLYKLQLSLGKNIADIGKTIDHKSLDA 122 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 AVDL+ A++I G G+S A D K R V + + N + D+++ Sbjct: 123 AVDLMRSAQQIYVAGEGASGLAAQDLFYKLIRSGKNVNFVQSSHIALEQVANINKEDILI 182 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S++G T+ + +A+ A++N+A ++A+T +PL A ITL E Y + S Sbjct: 183 VFSYSGLTQEPLLMAKQAQKNNAKIVAVTRIQDSPLKNMADTVITLPSNEKLLRYGAINS 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 A++ +L + +K + + + Sbjct: 243 LFAEIFASSLLYLSLISPNLEELNMKMKTTQNLTNQLKV 281 >UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8A7_MACCJ Length = 285 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 126/286 (44%), Gaps = 5/286 (1%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 ++L +I + + E+++A+V++ P+ ++ I +A +N SE + RF + + Sbjct: 3 SVLGQITKMYDSFTPVEKRIADVVIEYPEKVVNLPIKEIAHLSNTSEAAIVRFSKRLGLS 62 Query: 62 GFPDFKLHLAQSLAN-GTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 G K+ LA+ L V + D E K+F + + L + + I+ Sbjct: 63 GIKVVKVELARELHTIADKKVPTKIELTDDEEVMKEKVFNNTIQALYNTEKVISAKVIDE 122 Query: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 A +T AK++ FG+G+S VA D K + + + D++ + GDV+ Sbjct: 123 AAQAITSAKRVMIFGVGNSRVVATDLHVKLMNIDQSAILATDLLSAITLLGHYEAGDVLF 182 Query: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 + S T + K + ++ + A+E +I LT +P R A + + + E+ M Sbjct: 183 VTSETSKNKVITDICKYAKEKGIKIILLTQKFSSPAIRMADIVLAMAKEENEINLGYMTV 242 Query: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNL 285 R AQLT++DVL N++ + E + + NL Sbjct: 243 RTAQLTIVDVLYLRVCAYLKDTVLSNMQNLNET---RKITHEQENL 285 >UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KYQ0_EXISA Length = 267 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 111/274 (40%), Gaps = 14/274 (5%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 E+I+ ++ SE+K+A+ ++A+ + AI +I +A S T+ RFC+ + + Sbjct: 3 EQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGSYS 62 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 KL + ++L ++ + S + + H +D+ + Sbjct: 63 SLKLMMQKTLTETNLPQTTSLEP----------MQRSYIELIQTTAHLIDQDELLAICKE 112 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 +T ++ + +GLG++ VA + + R + + D M + DVV+ S+ Sbjct: 113 ITSSRSVHLYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASIVTSEDVVIAFSN 172 Query: 185 TGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G ++ +V+ QLA+E+ +A +PLA + + ++L Sbjct: 173 SGESREVVQAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFL--INTQLPL 230 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 L D + + + + +AL + Sbjct: 231 LFTADAVTKTLMETN-EALKAHYLQTLKALDRLK 263 >UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15N75_PSEA6 Length = 282 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 142/280 (50%), Gaps = 4/280 (1%) Query: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 M+ KI++ + LS SE K+A+ +L+S + S +A VS+ +V +F + + Sbjct: 1 MSTFTKIKAIKDTLSNSELKLAKFVLSSSNAVRDLSSQELANVVGVSQSSVVKFAQKLGY 60 Query: 61 RGFPDFKLHLAQSLANGTPY--VNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAI 118 +G+P FKL + +L + ++ + +DS + + K+ S +A L ++ +++A Sbjct: 61 KGYPAFKLGVIDALNSTASEGNLHGKITLNDSFKQVSEKLLSSKVAVLTETKNLNEEAAF 120 Query: 119 NRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDV 178 ++AV+LL AK+I GLG SA V D K + + + D+ Q S+ D+ Sbjct: 121 HQAVELLKSAKRILICGLGGSALVGKDFSYKLQKLGMLAIEEPDMHAQLAFAATLSENDL 180 Query: 179 VVLISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPM 237 V IS +G T+ +V + + A++N VI +T G TP++ A + + E++ + Sbjct: 181 VFAISESGSTREIVNVVKQAKQNSCKVITVTRYGATPVSDLADIKLYSVAEEESARLSSI 240 Query: 238 VSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 ++R AQ +ID+L T + R L++ + + R Sbjct: 241 MARTAQEFIIDILFIAITQS-SRQGRQLLEKTNSVVSDFR 279 >UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UGP6_SINMW Length = 284 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 5/275 (1%) Query: 5 EKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFP 64 +++S L LS +ER+VA +L + D +I S++A+A +VS+ TV R CR+ GF Sbjct: 14 SRLRSVLPKLSDAERRVALWMLKNVDLSIRQSMSAIAQATDVSDTTVLRMCRTAGFEGFT 73 Query: 65 DFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDL 124 D KL LAQ + + + S G++F + L+ LD++ +A+DL Sbjct: 74 DLKLALAQE--PREAIEHSSGEPEASALQAAGRLFRAITQALNDTFGVLDEATFAKALDL 131 Query: 125 LTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH 184 + AK I G+G S VA + R + D LQ M GD+VV IS+ Sbjct: 132 VANAKHIMVGGVGGSGIVAQAFYQRCIRLGLRCDAPIDSQLQIMHAALTGPGDLVVAISY 191 Query: 185 TGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQ 243 +G T + V + Q A+ A + +T ++ + LAR A + + E PM +++AQ Sbjct: 192 SGITSDPVLVLQEAKARGASTLCITGNSSSALARLADVVLVSVSHEQ--GSEPMAAQIAQ 249 Query: 244 LTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +T++D L R + +R+ A+ Sbjct: 250 MTLVDALYAALVARNPEPAQLTEERMVNAILPKSI 284 >UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J381_DEIGD Length = 286 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 114/278 (41%), Gaps = 10/278 (3%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 + L ++ ++ L + ++A ++A P+ I+ +I +A A V E V R CR + Sbjct: 18 SALARLHAERAQLPPTLERIAAYVVAHPEEVIYQTITELAATAGVVESAVTRLCRRLGFS 77 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 GF FK+ L+ ++ D + A+ ++ R D +A+ R Sbjct: 78 GFHAFKIALSGDVSQ----AQGAAEATDPFSVAARQ----AVQAIEGTRQVADPAALERV 129 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 + A ++ G +S A NK R VP D L ++ S VVV Sbjct: 130 AQAIAAATRVDVVGQSNSGLSAQFLANKLARVGVPAFAYTDPHLAAVAAATQSPRGVVVG 189 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSR 240 + +G T + V+ +LA A +A+T A +P+ R A + PE + S Sbjct: 190 FTRSGSTIDTVQTLRLAASKGACTVAVTHRASSPVTRYAREVLATSSPESPLAGGALSSL 249 Query: 241 LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 ++Q+ +++ L L+ E++ E ++ Sbjct: 250 VSQVLLVEA-LYLVLLPLLPGADAFLRETAESVVEKKY 286 >UniRef50_A4E6N7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6N7_9ACTN Length = 301 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 121/266 (45%), Gaps = 3/266 (1%) Query: 15 SKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSL 74 S+SE+++ + IL A + A ++ A SE TV+RFCR + F F+ LA+ L Sbjct: 35 SESEQRIVDYILEHQSEAPRLTAAQLSRAAATSEATVSRFCRKLGFGSFRSFQFSLARDL 94 Query: 75 ANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFF 134 + + D++E I + ++ L+ +D + V L A I F Sbjct: 95 ESQRNEGLTDEVSLDNMEQSLKNILAAKVSELNATIDGIDHDTLAAVVHALKHAGVIEFA 154 Query: 135 GLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVEL 194 +G++ AVA DA KF + + + S + GDV+VLIS++G+++ L + Sbjct: 155 AVGNTNAVALDATFKFSQLGLRCMASTISETSIGFALTLRPGDVIVLISNSGKSRRLNRM 214 Query: 195 AQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMV-SRLAQLTVIDVLAT 252 A+ AR A V+ ++S + +PLAR A E S+++ +I+V+ Sbjct: 215 AKAARNCGATVVVISSDSKSPLARLADYTFNTVNHEALLTTGDFAFSKISATMIIEVIYN 274 Query: 253 GFTLRRGAKFRDNLKRVKEALKESRF 278 R+++ +E ++ + Sbjct: 275 FLLPEIKD-AREHISYYEELIQPDKV 299 >UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D858_9CLOT Length = 275 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 3/253 (1%) Query: 6 KIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPD 65 K++ + L ER+ AE +L S IA +A EA VSE TV R C M G + Sbjct: 12 KLRGVIGSLGAQERRFAEYLLNSFAGIEKEPIAVLAKEAQVSEATVVRVCHKMGYSGLKE 71 Query: 66 FKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLL 125 K+ +A+ + + ++ ++F A+ L + +D+ + +A +L Sbjct: 72 LKIVVARENETAGSFDGGIGGQY--MDELKERVFMGAIRALQDTMNLIDEDEVEKATKVL 129 Query: 126 TQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHT 185 A I+ +G+G S VA ++ + +P ++ ++ + GDV + ISH+ Sbjct: 130 CNANYISIYGVGGSVPVARSLKHQLMKLGIPSNVYNEFQPTIIAAEKYNKGDVAIGISHS 189 Query: 186 GRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVSRLAQL 244 G + +VE ++AR A I +TS G + + + + + ++R+AQ Sbjct: 190 GESSQVVEALRIARGKGATTICITSYGDSAITHCSDVKFFTTSETLLNGGDNSLARIAQT 249 Query: 245 TVIDVLATGFTLR 257 ++I++L L+ Sbjct: 250 SIINLLYLNVALK 262 >UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELR8_PEDAC Length = 280 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 128/278 (46%), Gaps = 6/278 (2%) Query: 2 NMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTR 61 +++ +++QL +K E++VA I+ P I S+ +A + S TV R + + Sbjct: 5 SVVFTLKNQLGDFTKKEKQVARFIIKYPQAVIDSNAKQVADQVGTSAATVIRLAKRVCKN 64 Query: 62 GFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRA 121 G P+ K L + ++ D++E K+ T++ ++ A+ A Sbjct: 65 GLPELKERLKNETMVNDKFF-EEIDPADTLEVMKQKMEYRINHTIEQTNRTVKGGAVRNA 123 Query: 122 VDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVL 181 L+ QA + +G+G+S VA D KF R PV + D+ ++ VVVL Sbjct: 124 AKLVDQADVVYTYGIGASHLVADDLQQKFGRLGKPVAQTQDVH--LLAAEMSKGRGVVVL 181 Query: 182 ISHTGRTKNLVELAQLARENDAMVIALTSA-GTPLAREATLAITLDVP--EDTDIYMPMV 238 IS++G TK ++L AR D V+A+T +PLAR++T+ + + Sbjct: 182 ISNSGETKETLQLLGAARALDLPVVAITRVLSSPLARQSTVVLAHSDSGEGNQLRSAATT 241 Query: 239 SRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES 276 S +AQL V+D+L F D L + ++ +K + Sbjct: 242 SLMAQLYVVDLLYYSFLKLHFEDNVDQLTKSRKIIKSN 279 >UniRef50_B7IEI4 Transcriptional regulator, RpiR family n=1 Tax=Thermosipho africanus TCF52B RepID=B7IEI4_THEAB Length = 290 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 132/277 (47%), Gaps = 13/277 (4%) Query: 3 MLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRG 62 ++EK+++ + L +ERK+A I+ PD+ IH SI+ ++ A V E T++R R + +G Sbjct: 19 IIEKLKAIYDQLKPAERKIARYIINYPDDVIHHSISELSELAKVGEATISRISRKLGYKG 78 Query: 63 FPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAV 122 F K+ LA+ L++ + E+ T + + +L+ + ++++ IN+ Sbjct: 79 FQALKIELAKELSSISFE-----------ETKTNSVISEVIESLNKLSKIINENEINQIA 127 Query: 123 DLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLI 182 + ++ KI FFG+GSS VA F R Y +D +Q +S + VV I Sbjct: 128 KKVVESNKIFFFGVGSSGVVAEYGALLFTRGGFFANYYNDPHMQVISAAGMDNQTVVFGI 187 Query: 183 SHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVSRL 241 S +G ++ V+ ++A+++ A +A+T + + I + + + Sbjct: 188 SSSGNIRDTVKSMKVAKDSKAFTVAITGGYESKITEVVDKTIYIPPAGLERGMPKISPIV 247 Query: 242 AQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRF 278 +Q++++ ++ + + +K+ LK ++ Sbjct: 248 SQISILHMIFEEVLSLKKE-AIEIIKKANTTLKTKKY 283 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.186 0.528 Lambda K H 0.267 0.0569 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,981,003,328 Number of Sequences: 3077464 Number of extensions: 103170817 Number of successful extensions: 394267 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3334 Number of HSP's successfully gapped in prelim test: 995 Number of HSP's that attempted gapping in prelim test: 385283 Number of HSP's gapped (non-prelim): 4868 length of query: 289 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 162 effective length of database: 649,558,428 effective search space: 105228465336 effective search space used: 105228465336 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 93 (40.0 bits)