195 c1ir6A_ Probab=90.71   E-value=1.3  Score=23.80  Aligned_columns=142  Identities=14%

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH--HHHHCCCEEEEECCHHHH-------HHHHHHCCCCEEEEEECCC
Q ss_conf             9999999999982054212242028999999999--984059819995783479-------9998407998599982798
Q batch____       115 KSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMN--KFFRFNVPVVYSDDIVLQ-------RMSCMNCSDGDVVVLISHT  185 (289)
Q Consensus       115 ~~~i~~~~~~i~~a~rI~~~g~g~s~~~a~~~~~--~l~~~g~~~~~~~~~~~~-------~~~~~~~~~~dvvI~iS~~  185 (289)
                      .+..+++++.|.++++|.++|....-.++.-+..  .|.+.|+.+..+......       ........+.|++|++..+
T Consensus        11 ~~a~~~l~e~i~~~~~I~I~~h~D~DGi~Sa~~l~~~L~~~gk~~~i~~~~~~~~~~~~~~e~~~~~~~~~dliii~D~g   90 (385)
T c1ir6A_          11 REAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDCG   90 (385)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHTTCSEEEESSCC
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCC
T ss_conf             99999999999749979999579810799999999999973994899936887634478988998302369799997488


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCEEEEEECCCCCCCCCCHHHHHHHHH--------------HHHHHH
Q ss_conf             789899999999997799099975985711110787888705854344320188899999--------------999999
Q batch____       186 GRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLT--------------VIDVLA  251 (289)
Q Consensus       186 g~~~~~~~~~~~a~~~ga~iI~iT~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~a~l~--------------il~~L~  251 (289)
                      -...   ..++.++.+|..+|.|..-..+-.......+.-..........+....+..++              +.++++
T Consensus        91 ~~~~---~~~~~~~~~~~~vivIDHH~~~~~~~~~~~inp~~~~~~~~~~s~s~l~~~l~~~l~~~~~~~~~~~~a~l~~  167 (385)
T c1ir6A_          91 ITNH---AELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPLEYADLAA  167 (385)
T ss_dssp             TTCG---GGHHHHTTSCCEEEEECCSCCCSSCCSSEEECGGGSTTCCCCCCHHHHHHHHHHHHHHTTTCCCCGGGHHHHH
T ss_pred             CCCH---HHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             7303---3268898449909995775687676866998884478874100078999999999998728996578999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999604
Q batch____       252 TGFTLRRG  259 (289)
Q Consensus       252 ~~l~~~~~  259 (289)
                      .++..+.+
T Consensus       168 ~G~~~Dt~  175 (385)
T c1ir6A_         168 VGTIADVA  175 (385)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHC
T ss_conf             99975111


