220 d2hoxa1 Probab=99.88   E-value=1.4e-20  Score=144.55  Aligned_columns=292  Identities=12%

Q ss_pred             HHHHHHHHHHHHHHHCC--CCEEEEECCH-HHHHHHHHHHCCCCCCCCCCCCCCC-----CHHHHHHHHHHHCCCEEEEE
Q ss_conf             99999999999998289--8249986795-9999999984013788664446774-----11455999998539768998
Q batch____        72 DIVEQLAIDRAKELFGA--DYANVQPHSG-SQANFAVYTALLEPGDTVLGMNLAH-----GGHLTHGSPVNFSGKLYNIV  143 (417)
Q Consensus        72 ~~~~~~~~~~~a~l~g~--~~~~v~~~sG-t~A~~~~i~al~~pgd~v~~~~~~~-----~~~~s~~~~~~~~g~~~~~~  143 (417)
                      .++++..+++.+..-++  +...|.+++| ++++.+++.++++|||.+++..+.+     |.|..+...+...|.....+
T Consensus       103 ~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~  182 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW  182 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999998850886788776999468899999999986488861235677435730023778999998559974442


Q ss_pred             ECCCCCCCCCCHHHHHHHCCCCCCEEEEECC-CCCCCCCCHHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf             6367876565989999742335948999468-989870108999999997797798141442364345556652135633
Q batch____       144 PYGIDATGHIDYADLEKQAKEHKPKMIIGGF-SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHV  222 (417)
Q Consensus       144 ~~~~~~~~~~D~e~l~~~~~~~~~~ii~~~~-s~~g~~~dl~~i~~ia~~~g~~vivD~a~~~g~~~~~~~~~~~~~~d~  222 (417)
                      .        +|++++++++++.+..+++.+| |++|.+.+       |.++|+++++|++|.. .......+.....+.+
T Consensus       183 ~--------~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~-~~~~~~~~~~~~~i~~  246 (425)
T d2hoxa1         183 A--------GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYW-PHYTPIKYKADEDILL  246 (425)
T ss_dssp             E--------EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCS-TTTSCCCSCBCCSEEE
T ss_pred             C--------CCHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCC-CCCCCCCCCCCCEEEE
T ss_conf             4--------7988999724888579998178888560654-------2323968997143234-3323333456854999


Q ss_pred             EEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---------HHHHCCCCCHHHHHHHHH
Q ss_conf             77538545666578244222654799874201101346565426889999999---------998515672469999999
Q batch____       223 VTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVA---------LKEAMEPEFKTYQQQVAK  293 (417)
Q Consensus       223 ~~~s~~K~l~g~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~---------~~~~~~~~~~~~~~~~~~  293 (417)
                      .++|+...+.|++.||++..+.  ....++.+.......+.....+.++..+.         ......+..+..++.+.+
T Consensus       247 ~S~SK~~g~~GlRiG~~i~~~~--~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~  324 (425)
T d2hoxa1         247 FTMSKFTGHSGSRFGWALIKDE--SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE  324 (425)
T ss_dssp             EEHHHHTSCGGGCCEEEEECCH--HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCCEEEEEECCH--HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8155101233231018996898--99999998641057773689999999996020134565555489999999999999


Q ss_pred             HHHHHHHHHHHCCCEECCCCCCCCE------------EEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCE
Q ss_conf             9999996546369854478776650------------2788337889999999999866928704335653464445760
Q batch____       294 NAKAMVEVFLERGYKVVSGGTDNHL------------FLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSG  361 (417)
Q Consensus       294 ~~~~l~~~l~~~g~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~p~~~~~~~~~~~  361 (417)
                      +.+.+.+.|...+.-.+.....+..            .++.+.....+...+.++|.++||.+.++..++     ..+.+
T Consensus       325 r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG-----~~~~~  399 (425)
T d2hoxa1         325 RWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFE-----ASSRY  399 (425)
T ss_dssp             HHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGT-----SCTTE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCC-----CCCCE
T ss_conf             9999999986357630034565543221001377876169986789808999999996694997170238-----98865


Q ss_pred             EEEECCHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6864331441589989999999999999961
Q batch____       362 IRVGTPAITRRGFKEAEAKELAGWMCDVLDS  392 (417)
Q Consensus       362 iRi~~~~~t~~g~~~~di~~~a~~l~~~l~~  392 (417)
                      +|+++..      .+++++++.+.|.+++++
T Consensus       400 vRiSl~~------~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         400 VRLSLIK------TQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             EEEECSS------CHHHHHHHHHHHHHHHTC
T ss_pred             EEEEECC------CHHHHHHHHHHHHHHHHC
T ss_conf             9999139------989999999999998726