Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A825
DateThu Jan 5 11:06:42 GMT 2012
Unique Job IDac0374c45f3f8bf9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1dfoa_
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
Confidence and coverage
Confidence:100.0% Coverage:100%
416 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP
Secondary structure 
SS confidence 
Disorder  ??????????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  AKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE
Secondary structure 
SS confidence 
Disorder 
??
???
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS
Secondary structure 
SS confidence 
Disorder 
?
???????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.......
Sequence  GIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVYA
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1dfo chain A

3D model

Region: 2 - 417
Aligned: 416
Modelled: 416
Confidence: 100.0%
Identity: 100%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1eji chain A

3D model

Region: 5 - 415
Aligned: 410
Modelled: 411
Confidence: 100.0%
Identity: 48%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3h7f chain B

3D model

Region: 5 - 416
Aligned: 407
Modelled: 412
Confidence: 100.0%
Identity: 55%
PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis

Phyre2

PDB 3n0l chain A

3D model

Region: 7 - 417
Aligned: 393
Modelled: 395
Confidence: 100.0%
Identity: 54%
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni

Phyre2

PDB 1bj4 chain A

3D model

Region: 5 - 415
Aligned: 410
Modelled: 411
Confidence: 100.0%
Identity: 49%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1rv3 chain A

3D model

Region: 5 - 415
Aligned: 410
Modelled: 411
Confidence: 100.0%
Identity: 49%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2a7v chain A

3D model

Region: 5 - 415
Aligned: 373
Modelled: 386
Confidence: 100.0%
Identity: 49%
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: human mitochondrial serine hydroxymethyltransferase 2

Phyre2

PDB 2a7v chain A domain 1

3D model

Region: 5 - 415
Aligned: 373
Modelled: 386
Confidence: 100.0%
Identity: 49%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1kl1 chain A

3D model

Region: 8 - 411
Aligned: 401
Modelled: 404
Confidence: 100.0%
Identity: 61%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2dkj chain B

3D model

Region: 10 - 415
Aligned: 400
Modelled: 406
Confidence: 100.0%
Identity: 60%
PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase

Phyre2

PDB 3ecd chain C

3D model

Region: 5 - 416
Aligned: 374
Modelled: 382
Confidence: 100.0%
Identity: 54%
PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei

Phyre2

PDB 3hqt chain B

3D model

Region: 10 - 394
Aligned: 353
Modelled: 382
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa

Phyre2

PDB 2w8w chain A

3D model

Region: 25 - 393
Aligned: 344
Modelled: 365
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser

Phyre2

PDB 3nnk chain C

3D model

Region: 28 - 412
Aligned: 358
Modelled: 382
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway

Phyre2

PDB 1wyu chain B domain 1

3D model

Region: 5 - 395
Aligned: 369
Modelled: 386
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Glycine dehydrogenase subunits (GDC-P)

Phyre2

PDB 2bwn chain A domain 1

3D model

Region: 23 - 389
Aligned: 343
Modelled: 364
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1vjo chain A

3D model

Region: 28 - 391
Aligned: 337
Modelled: 364
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1c4k chain A domain 2

3D model

Region: 13 - 396
Aligned: 363
Modelled: 380
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Ornithine decarboxylase major domain

Phyre2

PDB 2vyc chain A

3D model

Region: 9 - 408
Aligned: 377
Modelled: 386
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli

Phyre2

PDB 3a2b chain A

3D model

Region: 25 - 393
Aligned: 342
Modelled: 361
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine

Phyre2
1
d1dfoa_
2
d1ejia_
3
c3h7fB_
4
c3n0lA_
5
d1bj4a_
6
d1rv3a_
7
c2a7vA_
8
d2a7va1
9
d1kl1a_
10
c2dkjB_
11
c3ecdC_
12
c3hqtB_
13
c2w8wA_
14
c3nnkC_
15
d1wyub1
16
d2bwna1
17
d1vjoa_
18
d1c4ka2
19
c2vycA_
20
c3a2bA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1dfoa_
100.0 100 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
2d1ejia_
100.0 48 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
3c3h7fB_
100.0 55 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
4c3n0lA_
100.0 54 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
5d1bj4a_
100.0 49 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
6d1rv3a_
100.0 49 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
7c2a7vA_
100.0 49 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: human mitochondrial serine hydroxymethyltransferase 2
8d2a7va1
100.0 49 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
9d1kl1a_
100.0 61 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
10c2dkjB_
100.0 60 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
11c3ecdC_
100.0 54 PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
12c3hqtB_
100.0 14 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
13c2w8wA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
14c3nnkC_
100.0 14 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
15d1wyub1
100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
16d2bwna1
100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
17d1vjoa_
100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
18d1c4ka2
100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
19c2vycA_
100.0 18 PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
20c3a2bA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
21c1c4kA_
not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:protein (ornithine decarboxylase);
PDBTitle: ornithine decarboxylase mutant (gly121tyr)
22d1bs0a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
23c2z9wA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
24c3bcxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
25c3islA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
26c3b46B_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
27c3tqxA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
28c2ogeC_
not modelled 100.0 14 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
29d1fc4a_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30c3mafB_
not modelled 100.0 12 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
31c3g0tA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
32c2po3B_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
33d1jf9a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
34c2c7tA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
35d1c7na_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
36d1xi9a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
37d1b5pa_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
38c3h14A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
39c3l8aB_
not modelled 100.0 16 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
40d1b9ha_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
41d2ch1a1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
42c3n75E_
not modelled 100.0 18 PDB header:lyase
Chain: E: PDB Molecule:lysine decarboxylase, inducible;
PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
43d1wyua1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
44d1h0ca_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
45c3caiA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
46d1o4sa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
47c2huuA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
48c3hbxB_
not modelled 100.0 12 PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
49d1w7la_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
50d1c7ga_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
51d1tpla_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
52c3f9tB_
not modelled 100.0 16 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
53d1m6sa_
not modelled 100.0 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
54c2r0tA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
55c3e9kA_
not modelled 100.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
56d2c0ra1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
57c2hzpA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
58c2dr1A_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
59d2r5ea1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
60d1js3a_
not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
61c3kaxB_
not modelled 100.0 14 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
62c3f0hA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
63c2yrrA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class v;
PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8
64c3dzzB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
65c3nysA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
66c3frkB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
67d1o69a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
68c3mc6C_
not modelled 100.0 15 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
69c3qguB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
70c3pplB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
71c3e2yB_
not modelled 100.0 13 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
72c2o0rA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
73d1j32a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
74d1mdoa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
75c1ynuA_
not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
76d1iaya_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
77c3lvmB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
78c3ftbA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
79d1bw0a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
80c2jisA_
not modelled 100.0 13 PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
81c3ffrA_
not modelled 100.0 10 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
82d1p3wa_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
83c3jtxB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
84c3asaA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis
85c3hdoB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
86d1t3ia_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
87c2x3lA_
not modelled 100.0 12 PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
88c3if2B_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution
89d1m7ya_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
90d1qz9a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
91d1gdea_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
92d1u08a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
93c3eibB_
not modelled 100.0 11 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
94d1x0ma1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
95c3getA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
96d2fnua1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
97c2x5dD_
not modelled 100.0 14 PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
98c3nraA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
99d2v1pa1
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
100c2hdyA_
not modelled 100.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
101d1svva_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
102c3uwcA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
103d1eg5a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
104c3pj0D_
not modelled 100.0 13 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
105c3dr4B_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
106c3pdxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminotransferase;
PDBTitle: crystal structural of mouse tyrosine aminotransferase
107d1lc5a_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
108c3rq1A_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula
109c3ly1C_
not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
110d1pmma_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
111d1d2fa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
112c2douA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase;
PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
113c3eucB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
114c3op7A_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
115d1m32a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
116c2o1bA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
117c3cq6E_
not modelled 100.0 13 PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
118c2zc0C_
not modelled 100.0 15 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
119c1d2fB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
120c2okkA_
not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:glutamate decarboxylase 2;
PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0