180 c1vmaA_ Probab=95.90   E-value=0.085  Score=31.95  Aligned_columns=128  Identities=17%

Q ss_pred             CCEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHC
Q ss_conf             65004334332100012333310456655410245650888742113665889898653022566647876479887412
Q batch____       341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQPEDYRKLFSAVFTDVWLFDQLLGPEGKPA  420 (547)
Q Consensus       341 ~i~l~i~~g~~~~i~G~sGsGKSTl~~~l~g~~~~~~G~i~i~~~~i~~~~~~~~~~~i~~v~q~~~l~~~ti~~Nl~~~  420 (547)
                      ..+..-.++..++++||+|+||||.+.=++..+.....++.+-..|....                             +
T Consensus        84 ~~~~~~~~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~-----------------------------g  134 (294)
T c1vmaA_          84 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-----------------------------A  134 (294)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-----------------------------H
T ss_pred             CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-----------------------------H
T ss_conf             00235789669999806887602489999999996799489997587686-----------------------------4


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH--
Q ss_conf             713369999984100134551125675348978899999999984299899993974488989999999999999986--
Q batch____       421 NPQLVEKWLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQE--  498 (547)
Q Consensus       421 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~LSgGq~qri~lARal~~~~~iliLDE~ts~lD~~~~~~i~~~l~~~~~~--  498 (547)
                      .-+......+.++......-...       ...+--|=++..|..++.+++++|  |++..+..+..+ +.+..+.+.  
T Consensus       135 A~eQL~~~a~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~IlID--TaGr~~~d~~~~-~el~~~~~~~~  204 (294)
T c1vmaA_         135 AIEQLKIWGERVGATVISHSEGA-------DPAAVAFDAVAHALARNKDVVIID--TAGRLHTKKNLM-EELRKVHRVVK  204 (294)
T ss_dssp             HHHHHHHHHHHHTCEEECCSTTC-------CHHHHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHHH-HHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHCCEEEECCCCC-------CHHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCCHHHH-HHHHHHHHHHH
T ss_conf             79999999976198289748836-------989999999999997799899981--888987857999-99999999963


Q ss_pred             ------CCCEEEEEC
Q ss_conf             ------698899972
Q batch____       499 ------MGKTIFAIS  507 (547)
Q Consensus       499 ------~~~tvi~is  507 (547)
                            ++.++++++
T Consensus       205 ~~~~~~p~~~~LVl~  219 (294)
T c1vmaA_         205 KKIPDAPHETLLVID  219 (294)
T ss_dssp             GTCTTCCSEEEEEEE
T ss_pred             HCCCCCCCEEEEEEE
T ss_conf             035668853999811