Email l.a.kelley@imperial.ac.uk Description P0ABI8 Date Thu Jan 5 11:15:34 GMT 2012 Unique Job ID aaeb57a782c16e00

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1m56G_ 100.0 38 PDB header:oxidoreductase Chain: G: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type) 2 d3dtua1 100.0 38 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 3 d1v54a_ 100.0 39 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 4 d1ar1a_ 100.0 39 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 5 d1ffta_ 100.0 100 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 6 c1fftF_ 100.0 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 7 c3eh4A_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus 8 d1xmea1 100.0 20 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 9 c3mk7K_ 100.0 14 PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase 10 c3o0rB_ 100.0 15 PDB header:immune system/oxidoreductase Chain: B: PDB Molecule:nitric oxide reductase subunit b; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 11 d1m56c_ 95.2 11 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 12 d1v54c_ 94.3 10 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 13 d1qlec_ 93.8 10 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 14 d1fftb2 33.9 16 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 15 c3mk7F_ 17.8 14 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 16 c3chxG_ 16.4 23 PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 17 c1jauA_ 16.4 38 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein (gp41); PDBTitle: nmr solution structure of the trp-rich peptide of hiv gp412 bound to dpc micelles 18 c2kncA_ 13.5 11 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 19 d2hf5a1 12.3 30 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 20 d1l9bh2 11.9 43 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 21 d3pvia_ not modelled 11.8 47 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease PvuII 22 c3ke2A_ not modelled 11.6 50 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 23 d1rzhh2 not modelled 11.4 44 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 24 d2ghvc1 not modelled 11.3 20 Fold:SARS receptor-binding domain-like Superfamily:SARS receptor-binding domain-like Family:SARS receptor-binding domain-like 25 d1n7za_ not modelled 10.7 23 Fold:Baseplate structural protein gp8 Superfamily:Baseplate structural protein gp8 Family:Baseplate structural protein gp8 26 d2rcrh2 not modelled 9.4 43 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 27 c1yewC_ not modelled 8.5 13 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 28 c3g9rF_ not modelled 8.3 38 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 29 d1y5ic1 not modelled 8.3 20 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 30 c1javA_ not modelled 8.2 38 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein (gp41); PDBTitle: average nmr solution structure of the trp-rich peptide of2 hiv gp41 bound to dpc micelles 31 c2pv6A_ not modelled 8.0 38 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: hiv-1 gp41 membrane proximal ectodomain region peptide in2 dpc micelle 32 c3ir3B_ not modelled 7.3 28 PDB header:lyase Chain: B: PDB Molecule:3-hydroxyacyl-thioester dehydratase 2; PDBTitle: crystal structure of human 3-hydroxyacyl-thioester dehydratase 22 (htd2) 33 d2qf3a1 not modelled 6.7 27 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases 34 c3kskA_ not modelled 6.7 47 PDB header:hydrolase Chain: A: PDB Molecule:type-2 restriction enzyme pvuii; PDBTitle: crystal structure of single chain pvuii 35 c2l2lB_ not modelled 6.5 26 PDB header:transferase Chain: B: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha 36 c1odqA_ not modelled 6.5 9 PDB header:lipid transport Chain: A: PDB Molecule:apoa-i peptide; PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40 37 c1odpA_ not modelled 6.5 9 PDB header:lipid transport Chain: A: PDB Molecule:apoa-i peptide; PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40 38 c1odrA_ not modelled 6.5 9 PDB header:lipid transport Chain: A: PDB Molecule:apoa-i peptide; PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40 39 c2yupA_ not modelled 6.4 18 PDB header:cell adhesion Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the second sh3 domain of human vinexin 40 d1dzfa1 not modelled 6.3 24 Fold:Restriction endonuclease-like Superfamily:Eukaryotic RPB5 N-terminal domain Family:Eukaryotic RPB5 N-terminal domain 41 c2fu4B_ not modelled 5.9 19 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 42 c2kncB_ not modelled 5.9 24 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 43 d1ihwa_ not modelled 5.9 30 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 44 d1okkd1 not modelled 5.6 21 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 45 d2e74g1 not modelled 5.5 33 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 46 c2yu6A_ not modelled 5.5 24 PDB header:rna binding protein Chain: A: PDB Molecule:yth domain-containing protein 2; PDBTitle: solution structure of the yth domain in yth domain-2 containing protein 2 47 c1izlJ_ not modelled 5.5 21 PDB header:photosynthesis Chain: J: PDB Molecule:photosystem ii: subunit psba; PDBTitle: crystal structure of photosystem ii 48 d1ctda_ not modelled 5.5 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 49 d1vf5g_ not modelled 5.5 33 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 50 c1vf5G_ not modelled 5.5 33 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 51 c1yybA_ not modelled 5.5 33 PDB header:apoptosis Chain: A: PDB Molecule:programmed cell death protein 5; PDBTitle: solution structure of 1-26 fragment of human programmed2 cell death 5 protein 52 d1ehkb2 not modelled 5.4 22 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 53 d2j7pe1 not modelled 5.3 21 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 54 d2jioa1 not modelled 5.2 25 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 55 c3a1gD_ not modelled 5.0 42 PDB header:transferase Chain: D: PDB Molecule:polymerase basic protein 2; PDBTitle: high-resolution crystal structure of rna polymerase pb1-pb22 subunits from influenza a virus