BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (325 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q52219 RepFIB replication protein A n=58 Tax=Bacteria R... 662 0.0 UniRef50_Q46775 RepI n=11 Tax=Enterobacteriaceae RepID=Q46775_ECOLX 573 e-162 UniRef50_Q934T6 Replication protein repA n=29 Tax=Enterobacteria... 397 e-109 UniRef50_Q19N91 RepH12 n=8 Tax=Enterobacteriaceae RepID=Q19N91_E... 285 2e-75 UniRef50_C8QB82 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b... 264 4e-69 UniRef50_P05833 Protein repA n=9 Tax=root RepID=REPA_ECOLX 251 2e-65 UniRef50_Q19NT3 RepA n=9 Tax=root RepID=Q19NT3_ECOK1 243 7e-63 UniRef50_A6TIP8 DNA replication n=2 Tax=Enterobacteriaceae RepID... 236 6e-61 UniRef50_C8UR54 Probable replication protein n=1 Tax=Escherichia... 233 7e-60 UniRef50_B4ABW5 Replication protein RepA n=1 Tax=Salmonella ente... 232 2e-59 UniRef50_Q08088 Replication protein n=7 Tax=Enterobacteriaceae R... 214 3e-54 UniRef50_B5RKG1 Initiator replication protein RepB n=1 Tax=Klebs... 205 2e-51 UniRef50_C1ME85 RepA protein n=1 Tax=Citrobacter sp. 30_2 RepID=... 197 6e-49 UniRef50_C9Y5R6 RepFIB replication protein A n=3 Tax=Enterobacte... 187 6e-46 UniRef50_Q8E8A8 Plasmid replication protein RepA n=2 Tax=Shewane... 171 4e-41 UniRef50_Q8RNX4 Replication protein RepA1 n=1 Tax=Serratia sp. 2... 144 4e-33 UniRef50_Q47035 Rep protein (Fragment) n=2 Tax=Escherichia RepID... 134 4e-30 UniRef50_A1VQ75 Putative uncharacterized protein n=2 Tax=Proteob... 54 9e-06 >UniRef50_Q52219 RepFIB replication protein A n=58 Tax=Bacteria RepID=REP10_ECOLX Length = 325 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/325 (99%), Positives = 324/325 (99%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA Sbjct: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS Sbjct: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 Query: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL Sbjct: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 Query: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ Sbjct: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 TVRRAMEQLREIGYLDYTEIQRGRTK FCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE Sbjct: 241 TVRRAMEQLREIGYLDYTEIQRGRTKLFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 Query: 301 MAEKLALLEKLGITLDDLEKLFKSR 325 MAEKLALLEKLGITLDDLEKLFKSR Sbjct: 301 MAEKLALLEKLGITLDDLEKLFKSR 325 >UniRef50_Q46775 RepI n=11 Tax=Enterobacteriaceae RepID=Q46775_ECOLX Length = 301 Score = 573 bits (1478), Expect = e-162, Method: Compositional matrix adjust. Identities = 280/301 (93%), Positives = 288/301 (95%) Query: 25 MRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTW 84 MRLGVFVPTLKSLKNSKKNTLSRTDATEE+TRLSLARAEGFDKVEITGPRLDMDNDF TW Sbjct: 1 MRLGVFVPTLKSLKNSKKNTLSRTDATEEVTRLSLARAEGFDKVEITGPRLDMDNDFNTW 60 Query: 85 VGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRT 144 VG+IHSFARH VIGDKVELPFVEFAKLCGIPSSQSSR+LRERISPSLKRIAGTVISFSRT Sbjct: 61 VGVIHSFARHKVIGDKVELPFVEFAKLCGIPSSQSSRKLRERISPSLKRIAGTVISFSRT 120 Query: 145 DEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 204 EKHT+EYITHLVQSAYYDTE+DIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ Sbjct: 121 TEKHTKEYITHLVQSAYYDTEKDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 180 Query: 205 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR 264 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR Sbjct: 181 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR 240 Query: 265 TKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLEKLFKS 324 TK FCIHYRRP+LK P+DES ENP P+ VSPEMAEKL LLEKLGITLDDLEKLFKS Sbjct: 241 TKLFCIHYRRPKLKPPHDESAENPQLPATTGDVSPEMAEKLKLLEKLGITLDDLEKLFKS 300 Query: 325 R 325 R Sbjct: 301 R 301 >UniRef50_Q934T6 Replication protein repA n=29 Tax=Enterobacteriaceae RepID=REPA_SALTI Length = 351 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/300 (64%), Positives = 235/300 (78%), Gaps = 12/300 (4%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 DK +GE+VTL PN NNTVQPVALMRLG+FVPTLKS +K + DA+ EL +LSLA+ Sbjct: 19 DKKTGEVVTLVPNTNNTVQPVALMRLGLFVPTLKSTARGRKGQMVSMDASAELKQLSLAK 78 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 AEG++ + I+G RLDMDNDFKTWVGIIH+FA+H V+GD V LPFVEF +LCGIP+++SS Sbjct: 79 AEGYEDIRISGVRLDMDNDFKTWVGIIHAFAKHKVVGDTVTLPFVEFVRLCGIPTARSSA 138 Query: 122 RLRERISPSLKRIAGTVISF-SRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 +LR+R+ SL RIA ISF S+ +++ Y+THLVQ+A Y T+ D V LQADP++FEL Sbjct: 139 KLRKRLDSSLTRIATNTISFRSKGSDEY---YVTHLVQTAKYSTKNDTVSLQADPKIFEL 195 Query: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 YQFD+KVLLQL+AIN L R+ESAQALYTFIESLP DPAPISLARLRARLNL S +QN Sbjct: 196 YQFDKKVLLQLRAINELSRKESAQALYTFIESLPPDPAPISLARLRARLNLTSRTITQNA 255 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 TVR+AMEQLREIGYLDYTE++RG + +F IHYRRP+L+ LPP+ A PE Sbjct: 256 TVRKAMEQLREIGYLDYTEVKRGSSVYFIIHYRRPKLRP--------ALPPTKAAPEEPE 307 >UniRef50_Q19N91 RepH12 n=8 Tax=Enterobacteriaceae RepID=Q19N91_ECOK1 Length = 362 Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/284 (52%), Positives = 194/284 (68%), Gaps = 5/284 (1%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSL--KNSKKNTLSRTDATEELTRLSL 59 +K SG+ + L PN+N TVQ +ALMRLG+FVP+ KS+ +N + T+ DAT+EL LSL Sbjct: 21 EKESGKDIILRPNSNRTVQSIALMRLGLFVPSPKSVGRQNREYKTVG-FDATKELQTLSL 79 Query: 60 ARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQS 119 +EGF + I G RL+M DFKTW+GII ++A H + D + L F EF KLC + +S Sbjct: 80 MESEGFTNISIVGERLNMSVDFKTWMGIIRTYANHPINNDTISLKFTEFLKLCTPENYRS 139 Query: 120 SRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFE 179 S R+RI SL+R+A +SF T ++ Y THLVQSA D E D V LQ DP++FE Sbjct: 140 STASRKRIDASLRRLASVTLSF--TSNNSSKVYTTHLVQSALLDPESDQVVLQVDPKIFE 197 Query: 180 LYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQN 239 LYQ+D KVL+QLKAI L ++ESAQALYTFIESLP +P PISL RL+ RLNLK+ SQN Sbjct: 198 LYQYDHKVLMQLKAIKELAKKESAQALYTFIESLPPNPIPISLTRLKNRLNLKTRANSQN 257 Query: 240 QTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDE 283 TVR+A+E+L IGYL YTEI++ +F IH R P L N + Sbjct: 258 ATVRKALEELASIGYLKYTEIKKDGKVYFQIHKRDPDLNLNNTQ 301 >UniRef50_C8QB82 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b RepID=C8QB82_9ENTR Length = 339 Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 146/326 (44%), Positives = 206/326 (63%), Gaps = 7/326 (2%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLK-NSKKNTLSRT-DATEELTRLS 58 ++K +GE+V L P+ TVQPVALMRLG+FVP K S NT+ T DATE+L L Sbjct: 15 VNKKTGEVVHLNPSAAATVQPVALMRLGLFVPNTDHAKAKSSVNTVKSTVDATEDLYHLE 74 Query: 59 LARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQ 118 + + EG+ + I RLDM DF+ W+GII S + K++LPF +F + CG S + Sbjct: 75 VVKREGYKDISIRSERLDMATDFRVWLGIIRSIYDNGTFAGKLKLPFTKFLQNCGFDSKR 134 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLF 178 S++ +++RI SL R+ G I F R D T T LV SA+Y+ ++ V+++ D RL Sbjct: 135 SNKDMKKRIDDSLMRLRGVTIQF-RND---TGSLTTGLVNSAHYNMAKNEVEIEGDHRLA 190 Query: 179 ELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQ 238 +LYQ D KV L+LKAI+ L R+ESAQALYTFIESLPR+PAP+S+ RLR RL LKS + Q Sbjct: 191 DLYQMDYKVYLRLKAIDHLPRKESAQALYTFIESLPRNPAPVSMKRLRERLRLKSRIAYQ 250 Query: 239 NQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVS 298 N VR+A+E+L+EI YL+YTE +RGR+ +F I R P L P+ K + + V Sbjct: 251 NHIVRKALEELKEINYLEYTETKRGRSVYFNITKRNPNL-IPDKSLKLDRSAEDEPQIVD 309 Query: 299 PEMAEKLALLEKLGITLDDLEKLFKS 324 M K++ L+ G + +++ K+ S Sbjct: 310 EAMIAKISKLKDSGFSEEEIAKILIS 335 >UniRef50_P05833 Protein repA n=9 Tax=root RepID=REPA_ECOLX Length = 288 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/273 (46%), Positives = 181/273 (66%), Gaps = 7/273 (2%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLS-RTDATEELTRLSLARAEGFDKVE 69 LT N NT+QPVA MRLG+FVP K S+ + S D +E + AR EGF ++ Sbjct: 22 LTVNELNTIQPVAFMRLGLFVP-----KPSRSSDYSPMIDVSELSSTFEFARLEGFTDIK 76 Query: 70 ITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISP 129 ITG RLDMD DFK W+GI+ +F+++ + ++++L F EFAK CG P + ++LR I Sbjct: 77 ITGERLDMDTDFKVWIGIVKAFSKYGISSNRIKLKFSEFAKDCGFPGKKLDKKLRAHIDE 136 Query: 130 SLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLL 189 SL++I G ISF R + + Y T L++ AY++ + D+V+L+AD RL+ELY FD +V+L Sbjct: 137 SLRKIRGKSISFKRGKDSQS-AYHTGLIKIAYFNADTDVVELEADERLWELYYFDYRVVL 195 Query: 190 QLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQL 249 QL AI AL R E AQALYTF+ SLP +PAPIS RLR RL+L S V QN+ +++A+ +L Sbjct: 196 QLHAIKALPRLEVAQALYTFLASLPSNPAPISFERLRERLSLISQVKEQNRIIKKAITKL 255 Query: 250 REIGYLDYTEIQRGRTKFFCIHYRRPRLKAPND 282 +IG LD + +++G+ + IH R P+L N+ Sbjct: 256 IDIGNLDASMVKKGQENYLIIHKRSPKLSVINE 288 >UniRef50_Q19NT3 RepA n=9 Tax=root RepID=Q19NT3_ECOK1 Length = 291 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 181/273 (66%), Gaps = 5/273 (1%) Query: 5 SGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEG 64 SG+ LTPN++ +VQPVAL+RL VF P + + +N +N DA++EL+ + +AR+EG Sbjct: 18 SGKTYQLTPNSSKSVQPVALLRLSVFTP-VGTKENRDRNF--EVDASDELSCMEIARSEG 74 Query: 65 FDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLR 124 +D ++ITG +L M DFK W+GII +F+++ +K+ F EFAK+CGI S+ ++R R Sbjct: 75 YDDIKITGVKLSMSTDFKCWLGIIMAFSKYGFTSEKITQTFNEFAKMCGISSTNINKRTR 134 Query: 125 ERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFD 184 R SL +A V++FS D + R +THLVQ A D + D V+L DP ++ELY++D Sbjct: 135 ARFKESLMNLASVVLAFS--DSRSGRFTVTHLVQKAMIDPKSDTVELVGDPSMWELYRYD 192 Query: 185 RKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRR 244 K LL L+ + L ++E+AQ+LY + E++P +++ RLR RL L +P+ +QNQ +R+ Sbjct: 193 HKTLLSLQVLYILAKKEAAQSLYIYFEAMPAGTLFVNMKRLRERLLLTTPIRTQNQIIRK 252 Query: 245 AMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRL 277 AM +L IGYLDY E+++GR F I R P+L Sbjct: 253 AMRELESIGYLDYQEVKKGRDIQFQIFKRSPKL 285 >UniRef50_A6TIP8 DNA replication n=2 Tax=Enterobacteriaceae RepID=A6TIP8_KLEP7 Length = 298 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 121/266 (45%), Positives = 167/266 (62%), Gaps = 4/266 (1%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEI 70 L P+ N TVQPVALMRLG+F+P+LK +N DA+ EL L LARAEG+ + I Sbjct: 23 LMPSRNATVQPVALMRLGLFLPSLKRKGKDTENI--SIDASSELQSLELARAEGYTDIRI 80 Query: 71 TGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPS 130 TGPRL M+ DFK WVGII +F+++ + +ELPF EFA CG S + LR R++ S Sbjct: 81 TGPRLSMETDFKVWVGIILAFSKYGLNSSTIELPFSEFATFCGFSSKDKDKGLRTRLADS 140 Query: 131 LKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQ 190 L R+ T I + EK ++ L+ +D + DI++L AD L+ELYQFDR+VLLQ Sbjct: 141 LIRLRSTTIKLA--SEKDRNGVVSGLLSRGKWDEKDDIMELTADESLWELYQFDRQVLLQ 198 Query: 191 LKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLR 250 + I L + +AQALYTFIESLP P P+S AR++ RL L SP QN+ + +A+++L+ Sbjct: 199 MFIIRQLANKGTAQALYTFIESLPERPIPLSFARIKRRLMLTSPNNQQNRVINKAIDELK 258 Query: 251 EIGYLDYTEIQRGRTKFFCIHYRRPR 276 +GYLD +++ I R PR Sbjct: 259 AVGYLDGDVVKKDGEWHLIITRRTPR 284 >UniRef50_C8UR54 Probable replication protein n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UR54_ECO1A Length = 294 Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 130/278 (46%), Positives = 179/278 (64%), Gaps = 6/278 (2%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKS----LKNSKKNTLSRTDATEELTRLSL 59 ++GE+ +L PNNN+T+QP+AL+RLGVFVPTLKS L+ T + T+ATEEL+ L + Sbjct: 17 NTGEIHSLKPNNNSTIQPIALLRLGVFVPTLKSTNVALRRGSSVTTNTTNATEELSSLKI 76 Query: 60 ARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKV-ELPFVEFAKLCGIPSSQ 118 EG++ +EI GPRLDMD DFK WVGI + + D + LPF EFA CG P + Sbjct: 77 VEQEGYEGIEIHGPRLDMDTDFKVWVGITSALFDYAPDDDGIITLPFSEFADRCGYPRKR 136 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEK-HTREYITHLVQSAYYDTERDIVQLQADPRL 177 S+ R+ I SL RI TV+ F K H +L+ + +TE D++++Q +L Sbjct: 137 LSKAFRKSIDDSLTRIQQTVVKFRFPAAKGHLNNINVNLLAYSSLNTELDVIEIQPQKQL 196 Query: 178 FELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFS 237 ELY D K +L+LK ++ L R+E+A+ LYTF E+LP +PAP+S+ RLRARLNLKS V Sbjct: 197 SELYYVDYKRILKLKMLDKLGRKETAKVLYTFFEALPANPAPVSIERLRARLNLKSSVSV 256 Query: 238 QNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRP 275 QN +R+AM+ L I YL ++EI+ GR F IH R P Sbjct: 257 QNSVIRKAMKDLEAIEYLKFSEIKNGRKIGFQIHKRNP 294 >UniRef50_B4ABW5 Replication protein RepA n=1 Tax=Salmonella enterica subsp. enterica serovar Newport str. SL317 RepID=B4ABW5_SALNE Length = 295 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/284 (48%), Positives = 184/284 (64%), Gaps = 9/284 (3%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 + KS+GE +TL + ++VQ V LMRLGVFVPTLKS +K+ T + +A+++L +LS+ Sbjct: 15 VQKSTGEEITLVSTSESSVQVVPLMRLGVFVPTLKSTDKAKE-TRTVVNASKDLNQLSIY 73 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFA-RHNVIGD--KVELPFVEFAKLCGIPSS 117 RAEGFD V I GPRLDMD DFKTW+GII R +G K+ LPF EFAK CG P + Sbjct: 74 RAEGFDNVVIKGPRLDMDTDFKTWIGIISVLTDRAFPMGSDGKITLPFSEFAKRCGFPRA 133 Query: 118 QSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQ---SAYYDTERDIVQLQAD 174 + LR+++ S+ I TV+ FSR K T + TH VQ + D +DIV L Sbjct: 134 RMKAELRQKLKDSIVNIMSTVVEFSRDAGKPTEK--THFVQLMGESTIDIAKDIVVLTPS 191 Query: 175 PRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSP 234 L +LY + +VLL+LKA+ L R+ESAQALY ++E+LP DP P+ + RLR RLNL S Sbjct: 192 MSLRDLYASEYRVLLKLKALKELARKESAQALYLYLEALPADPFPVKMERLRERLNLTSR 251 Query: 235 VFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLK 278 QNQ +R+AM+QL +IGYL Y E++ GR F I R P+LK Sbjct: 252 PALQNQVIRKAMKQLEDIGYLKYQELKNGRDIAFKIIERNPKLK 295 >UniRef50_Q08088 Replication protein n=7 Tax=Enterobacteriaceae RepID=Q08088_ECOLX Length = 293 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 115/261 (44%), Positives = 165/261 (63%), Gaps = 8/261 (3%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARA 62 K SGE++ L P T+QP L+RLGVFVPTLKS + + DATE L+RLS+ Sbjct: 17 KDSGEVIQLFPTLKQTIQPKVLLRLGVFVPTLKSTDKGGRKS-HHIDATEPLSRLSIVEG 75 Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGD-KVELPFVEFAKLCGIPSSQSSR 121 EG+ +++I GPRLDMD DFK+W GI+++ + + + ++EL F EFAK CG + + + Sbjct: 76 EGYSQIQIYGPRLDMDTDFKSWCGIVYALSNRPLDSEGQLELNFPEFAKFCGFDTKRIDK 135 Query: 122 RLRERISPSLKRIAGTVISFSR----TDEKHTREYITHLVQSAYYDTERDIVQLQADPRL 177 +L+ER SL RIA T ISF + TD++ T HLV+S YYD+ + ++ + +L Sbjct: 136 QLKERFDASLTRIARTNISFIKKIPGTDDQITIN--MHLVESTYYDSSTGKIIIKPNSKL 193 Query: 178 FELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFS 237 LY+ D K L LK + L R+ESAQALY ++ LP I RLR RL L S + + Sbjct: 194 NTLYRVDGKTRLYLKTLQKLARKESAQALYLYLAELPSTFYRIGFDRLRGRLQLSSHLGN 253 Query: 238 QNQTVRRAMEQLREIGYLDYT 258 QN TV++A+ QL+EIG+L+Y+ Sbjct: 254 QNATVKKALGQLKEIGFLEYS 274 >UniRef50_B5RKG1 Initiator replication protein RepB n=1 Tax=Klebsiella pneumoniae 342 RepID=B5RKG1_KLEP3 Length = 299 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/287 (42%), Positives = 179/287 (62%), Gaps = 11/287 (3%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNS---KKNTLSRTDATEELTRL 57 +++++GE++TL+ + +VQ V LMRLGVFVPTLKS + K N S +A+++L L Sbjct: 15 INQTTGEVITLSSTSETSVQTVPLMRLGVFVPTLKSTNKAIAKKSNVGSNINASDDLRHL 74 Query: 58 SLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDK---VELPFVEFAKLCGI 114 LA++EGF+++ I+GPRLDMD DFK W GII + + ++ + + F EFA CG Sbjct: 75 ELAKSEGFERITISGPRLDMDTDFKVWTGIISVLTDNELESNEDGTISIRFTEFAMRCGF 134 Query: 115 PSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQ---SAYYDTERDIVQL 171 + RE+I SL+++ V+ FS+ ++ T +T VQ + D D V L Sbjct: 135 SRGRLKAEFREKIKDSLRKLMSNVVEFSK--DRGTNIEVTKFVQLIGESTVDIGNDKVIL 192 Query: 172 QADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNL 231 L +LY + K+LL+L+A+ AL R+ESAQALYTFIE+LP +P P+S+ R R RL+L Sbjct: 193 TPSKTLKDLYVGEYKILLKLRALKALARKESAQALYTFIEALPPNPIPVSIERFRKRLSL 252 Query: 232 KSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLK 278 S QN TVR+A++QL +IGYL+Y E++ G F I R P LK Sbjct: 253 TSRPALQNSTVRKALKQLEDIGYLEYQELKEGNKIAFQIIKRNPSLK 299 >UniRef50_C1ME85 RepA protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1ME85_9ENTR Length = 288 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 108/271 (39%), Positives = 161/271 (59%), Gaps = 9/271 (3%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEI 70 LT N++VQPV+L+RLGVF P+ ++ N TE L+ L +A+ EG+ ++I Sbjct: 24 LTVTKNSSVQPVSLLRLGVFTPSCRTEATVTLN------VTEALSSLEIAKQEGYTDIKI 77 Query: 71 TGPRLDMDNDFKTWVGIIHSFARH--NVIGDKVELPFVEFAKLCGIPSSQSSRRLRERIS 128 TGP L+ DF+ W I+HSF+ + G+++++PF EFAKLCG PS + S +LR I+ Sbjct: 78 TGPMLNYFQDFRCWTAIVHSFSVSPDALKGNRIKMPFSEFAKLCGYPSKRYSTKLRNEIA 137 Query: 129 PSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVL 188 SL +I I F + + T+ + L++ A +D E D + L+AD RL++LY+ D L Sbjct: 138 DSLTKIRSKSIRFEK-NPGITKFKVAGLLKEAEFDGESDYIILEADERLWDLYRSDHLTL 196 Query: 189 LQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQ 248 L+ K + L R E+AQALYTF E+LP+ PAPI+ RLR RL L + QN+ +R A++ Sbjct: 197 LRKKPLELLTRNETAQALYTFFEALPQHPAPITFDRLRQRLLLNGRIAEQNRKMRTALDV 256 Query: 249 LREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 L IGYL + + I R P+L Sbjct: 257 LASIGYLKFYYLVDTSVPTIQITDRNPKLTG 287 >UniRef50_C9Y5R6 RepFIB replication protein A n=3 Tax=Enterobacteriaceae RepID=C9Y5R6_CROTZ Length = 230 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 97/201 (48%), Positives = 133/201 (66%), Gaps = 5/201 (2%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARA 62 K SGE LTPN+N TVQPVAL+RL VF P K K++ L DA+EEL+ L +AR Sbjct: 16 KESGESYELTPNSNKTVQPVALLRLSVFTPVSPKEKG-KRDFL--IDASEELSSLEVARQ 72 Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRR 122 EG+ ++I G +L M DFKTW+GII +F+++ DK+ LPF EFA++CG+ + + R Sbjct: 73 EGYTNIKIQGAKLGMSTDFKTWIGIISAFSKYGYTSDKICLPFSEFARMCGLRPTDINGR 132 Query: 123 LRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQ 182 R R+S SL ++ +SF D K R +THLVQ A D E + V++ DP L+ELY+ Sbjct: 133 ARNRLSESLFNLSSVTLSFRSQDGK--RSLVTHLVQRAQLDMETNEVEIVGDPSLWELYR 190 Query: 183 FDRKVLLQLKAINALKRRESA 203 +D KVLL LKA++AL R+ESA Sbjct: 191 YDHKVLLGLKALSALSRKESA 211 >UniRef50_Q8E8A8 Plasmid replication protein RepA n=2 Tax=Shewanella RepID=Q8E8A8_SHEON Length = 293 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 159/276 (57%), Gaps = 7/276 (2%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAE 63 +SG+L+T++ + +VQP L+R GVF P + + N + D + +L L + + E Sbjct: 18 NSGKLLTIS--STTSVQPNVLLRTGVFTPVGR---RTNANDVKAQDLSNDLVNLDVCQKE 72 Query: 64 GFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRL 123 G+D V + G RL+++ DFK W GI+ F+++ + V+L F EFAK C PS + + L Sbjct: 73 GYDLVTVRGQRLNIETDFKVWCGIVLVFSKYGYSSNTVKLTFSEFAKFCSYPSRRFDKNL 132 Query: 124 RERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQF 183 R++I SL RI +SF R + + T ++ A YD E DIV+L AD L++LY+ Sbjct: 133 RKQIGDSLGRIQSQSLSFRRKNSEKAVH--TGMLLRAMYDGEEDIVELMADETLWDLYRL 190 Query: 184 DRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVR 243 D +VL+ L+ + L R E AQ LY + SLP +P P+S RLR RL L++ N+ ++ Sbjct: 191 DYQVLVSLRVLEKLPRAEVAQCLYLYFTSLPENPHPVSFERLRERLRLETSKKEANRKIK 250 Query: 244 RAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 +++L IGYL + + +++ I R +L+A Sbjct: 251 TGIQKLESIGYLSGSFAVKNGEQYYLIDQRYKKLEA 286 >UniRef50_Q8RNX4 Replication protein RepA1 n=1 Tax=Serratia sp. 2-68 RepID=Q8RNX4_9ENTR Length = 208 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/133 (54%), Positives = 94/133 (70%), Gaps = 4/133 (3%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRT-DATEELTRLSLARAEGFDKVE 69 LTPN+N+TVQPVALMRLG+FVP SLK KN S T DA+EEL++L +A+AEG+ + Sbjct: 22 LTPNSNSTVQPVALMRLGLFVP---SLKRKGKNVESVTIDASEELSKLEIAQAEGYSNIT 78 Query: 70 ITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISP 129 I+GPRL M+ DFK WV +I SF+++ + +ELPF EFA G P + +R LRERIS Sbjct: 79 ISGPRLSMETDFKVWVAVILSFSKYGRDTNTIELPFSEFASFAGYPDKEKTRVLRERISG 138 Query: 130 SLKRIAGTVISFS 142 SL RI T +S S Sbjct: 139 SLTRIRSTTLSLS 151 >UniRef50_Q47035 Rep protein (Fragment) n=2 Tax=Escherichia RepID=Q47035_ECOLX Length = 66 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/66 (98%), Positives = 65/66 (98%) Query: 260 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLE 319 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPS AEKVSPEMAEKLALLEKLGITLDDLE Sbjct: 1 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSSAEKVSPEMAEKLALLEKLGITLDDLE 60 Query: 320 KLFKSR 325 KLFKSR Sbjct: 61 KLFKSR 66 >UniRef50_A1VQ75 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=A1VQ75_POLNA Length = 293 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 16/200 (8%) Query: 56 RLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIP 115 R+ A EG K+ TGP+LD D W + AR +G +++ +F K G Sbjct: 70 RVQKASVEGI-KIIHTGPQLD-QADLDVWEQALQ-LARTGGLGCRIQFTASQFLKSIGRG 126 Query: 116 SSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADP 175 + +S E + + R+A +V+ + H R Y ++ D + ++ +P Sbjct: 127 NGKSQH---EWLKGAFARLAASVVEIK---DAH-RAYFGAILHHGGRDDKTGRYVIEMNP 179 Query: 176 RLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPI---SLARLRARLNLK 232 ++ ELY D ++ ALK+R AQ L+ + S + P P+ +L RL N Sbjct: 180 KIIELYGLDGWSSVEFDQRMALKKRPLAQWLHGYYSSHAK-PFPVKVETLHRLCGSQNAA 238 Query: 233 SPVFSQNQTVRRAMEQLREI 252 F Q+ ++ A+E+L E+ Sbjct: 239 IKGFKQD--LKSALEKLEEV 256 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q52219 RepFIB replication protein A n=58 Tax=Bacteria R... 498 e-139 UniRef50_Q46775 RepI n=11 Tax=Enterobacteriaceae RepID=Q46775_ECOLX 446 e-124 UniRef50_C8QB82 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b... 408 e-112 UniRef50_Q934T6 Replication protein repA n=29 Tax=Enterobacteria... 401 e-110 UniRef50_Q19N91 RepH12 n=8 Tax=Enterobacteriaceae RepID=Q19N91_E... 363 4e-99 UniRef50_Q19NT3 RepA n=9 Tax=root RepID=Q19NT3_ECOK1 357 3e-97 UniRef50_P05833 Protein repA n=9 Tax=root RepID=REPA_ECOLX 347 3e-94 UniRef50_C8UR54 Probable replication protein n=1 Tax=Escherichia... 341 2e-92 UniRef50_A6TIP8 DNA replication n=2 Tax=Enterobacteriaceae RepID... 341 3e-92 UniRef50_B4ABW5 Replication protein RepA n=1 Tax=Salmonella ente... 332 8e-90 UniRef50_C1ME85 RepA protein n=1 Tax=Citrobacter sp. 30_2 RepID=... 328 2e-88 UniRef50_B5RKG1 Initiator replication protein RepB n=1 Tax=Klebs... 323 8e-87 UniRef50_Q08088 Replication protein n=7 Tax=Enterobacteriaceae R... 322 8e-87 UniRef50_Q8E8A8 Plasmid replication protein RepA n=2 Tax=Shewane... 320 6e-86 UniRef50_C9Y5R6 RepFIB replication protein A n=3 Tax=Enterobacte... 259 6e-68 UniRef50_A1VQ75 Putative uncharacterized protein n=2 Tax=Proteob... 185 2e-45 UniRef50_Q8RNX4 Replication protein RepA1 n=1 Tax=Serratia sp. 2... 183 9e-45 UniRef50_Q47035 Rep protein (Fragment) n=2 Tax=Escherichia RepID... 99 1e-19 Sequences not found previously or not previously below threshold: UniRef50_C7RW93 Putative uncharacterized protein n=1 Tax=Candida... 89 2e-16 UniRef50_Q3SEY9 Putative uncharacterized protein n=1 Tax=Thiobac... 87 7e-16 UniRef50_C5ANI6 TrfA family protein n=1 Tax=Burkholderia glumae ... 78 4e-13 UniRef50_Q21QG5 Putative uncharacterized protein n=1 Tax=Rhodofe... 76 2e-12 UniRef50_B9TFM5 TrfA transcriptional repressor protein, putative... 72 3e-11 UniRef50_Q120X5 TrfA n=2 Tax=Polaromonas RepID=Q120X5_POLSJ 65 2e-09 UniRef50_B1J370 Putative uncharacterized protein n=1 Tax=Pseudom... 59 2e-07 UniRef50_B0KMB8 Putative uncharacterized protein n=1 Tax=Pseudom... 58 4e-07 UniRef50_D1EBW3 TrfA family protein n=1 Tax=Neisseria gonorrhoea... 58 4e-07 UniRef50_C4UAU7 Plasmid-related transcriptional repressor protei... 58 5e-07 UniRef50_A0B4V8 TrfA family protein n=4 Tax=Burkholderia RepID=A... 57 1e-06 UniRef50_B3E1G9 TrfA family protein n=3 Tax=Desulfuromonadales R... 57 1e-06 UniRef50_A1WSX7 Putative uncharacterized protein n=1 Tax=Vermine... 52 3e-05 UniRef50_Q1H9T9 Trans-acting replication factor A n=1 Tax=Plasmi... 52 4e-05 UniRef50_Q21QH1 Putative uncharacterized protein n=1 Tax=Rhodofe... 50 1e-04 UniRef50_A4G755 Putative uncharacterized protein n=1 Tax=Hermini... 48 5e-04 UniRef50_A9AX68 Putative uncharacterized protein n=1 Tax=Herpeto... 47 0.001 UniRef50_A4MFD9 Putative uncharacterized protein n=1 Tax=Burkhol... 45 0.002 UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus s... 45 0.003 UniRef50_A9M4U4 Trans replication factor TrfA1 n=1 Tax=Vibrio sp... 42 0.029 >UniRef50_Q52219 RepFIB replication protein A n=58 Tax=Bacteria RepID=REP10_ECOLX Length = 325 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 324/325 (99%), Positives = 324/325 (99%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA Sbjct: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS Sbjct: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 Query: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL Sbjct: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 Query: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ Sbjct: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 TVRRAMEQLREIGYLDYTEIQRGRTK FCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE Sbjct: 241 TVRRAMEQLREIGYLDYTEIQRGRTKLFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 Query: 301 MAEKLALLEKLGITLDDLEKLFKSR 325 MAEKLALLEKLGITLDDLEKLFKSR Sbjct: 301 MAEKLALLEKLGITLDDLEKLFKSR 325 >UniRef50_Q46775 RepI n=11 Tax=Enterobacteriaceae RepID=Q46775_ECOLX Length = 301 Score = 446 bits (1147), Expect = e-124, Method: Composition-based stats. Identities = 280/301 (93%), Positives = 288/301 (95%) Query: 25 MRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTW 84 MRLGVFVPTLKSLKNSKKNTLSRTDATEE+TRLSLARAEGFDKVEITGPRLDMDNDF TW Sbjct: 1 MRLGVFVPTLKSLKNSKKNTLSRTDATEEVTRLSLARAEGFDKVEITGPRLDMDNDFNTW 60 Query: 85 VGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRT 144 VG+IHSFARH VIGDKVELPFVEFAKLCGIPSSQSSR+LRERISPSLKRIAGTVISFSRT Sbjct: 61 VGVIHSFARHKVIGDKVELPFVEFAKLCGIPSSQSSRKLRERISPSLKRIAGTVISFSRT 120 Query: 145 DEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 204 EKHT+EYITHLVQSAYYDTE+DIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ Sbjct: 121 TEKHTKEYITHLVQSAYYDTEKDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 180 Query: 205 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR 264 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR Sbjct: 181 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR 240 Query: 265 TKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLEKLFKS 324 TK FCIHYRRP+LK P+DES ENP P+ VSPEMAEKL LLEKLGITLDDLEKLFKS Sbjct: 241 TKLFCIHYRRPKLKPPHDESAENPQLPATTGDVSPEMAEKLKLLEKLGITLDDLEKLFKS 300 Query: 325 R 325 R Sbjct: 301 R 301 >UniRef50_C8QB82 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b RepID=C8QB82_9ENTR Length = 339 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 144/326 (44%), Positives = 204/326 (62%), Gaps = 7/326 (2%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLK-NSKKNTLSRT-DATEELTRLS 58 ++K +GE+V L P+ TVQPVALMRLG+FVP K S NT+ T DATE+L L Sbjct: 15 VNKKTGEVVHLNPSAAATVQPVALMRLGLFVPNTDHAKAKSSVNTVKSTVDATEDLYHLE 74 Query: 59 LARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQ 118 + + EG+ + I RLDM DF+ W+GII S + K++LPF +F + CG S + Sbjct: 75 VVKREGYKDISIRSERLDMATDFRVWLGIIRSIYDNGTFAGKLKLPFTKFLQNCGFDSKR 134 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLF 178 S++ +++RI SL R+ G I F T T LV SA+Y+ ++ V+++ D RL Sbjct: 135 SNKDMKKRIDDSLMRLRGVTIQFR----NDTGSLTTGLVNSAHYNMAKNEVEIEGDHRLA 190 Query: 179 ELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQ 238 +LYQ D KV L+LKAI+ L R+ESAQALYTFIESLPR+PAP+S+ RLR RL LKS + Q Sbjct: 191 DLYQMDYKVYLRLKAIDHLPRKESAQALYTFIESLPRNPAPVSMKRLRERLRLKSRIAYQ 250 Query: 239 NQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVS 298 N VR+A+E+L+EI YL+YTE +RGR+ +F I R P L P+ K + + V Sbjct: 251 NHIVRKALEELKEINYLEYTETKRGRSVYFNITKRNPNL-IPDKSLKLDRSAEDEPQIVD 309 Query: 299 PEMAEKLALLEKLGITLDDLEKLFKS 324 M K++ L+ G + +++ K+ S Sbjct: 310 EAMIAKISKLKDSGFSEEEIAKILIS 335 >UniRef50_Q934T6 Replication protein repA n=29 Tax=Enterobacteriaceae RepID=REPA_SALTI Length = 351 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 191/299 (63%), Positives = 231/299 (77%), Gaps = 10/299 (3%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 DK +GE+VTL PN NNTVQPVALMRLG+FVPTLKS +K + DA+ EL +LSLA+ Sbjct: 19 DKKTGEVVTLVPNTNNTVQPVALMRLGLFVPTLKSTARGRKGQMVSMDASAELKQLSLAK 78 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 AEG++ + I+G RLDMDNDFKTWVGIIH+FA+H V+GD V LPFVEF +LCGIP+++SS Sbjct: 79 AEGYEDIRISGVRLDMDNDFKTWVGIIHAFAKHKVVGDTVTLPFVEFVRLCGIPTARSSA 138 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 +LR+R+ SL RIA ISF + Y+THLVQ+A Y T+ D V LQADP++FELY Sbjct: 139 KLRKRLDSSLTRIATNTISFR--SKGSDEYYVTHLVQTAKYSTKNDTVSLQADPKIFELY 196 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQT 241 QFD+KVLLQL+AIN L R+ESAQALYTFIESLP DPAPISLARLRARLNL S +QN T Sbjct: 197 QFDKKVLLQLRAINELSRKESAQALYTFIESLPPDPAPISLARLRARLNLTSRTITQNAT 256 Query: 242 VRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 VR+AMEQLREIGYLDYTE++RG + +F IHYRRP+L+ LPP+ A PE Sbjct: 257 VRKAMEQLREIGYLDYTEVKRGSSVYFIIHYRRPKLRP--------ALPPTKAAPEEPE 307 >UniRef50_Q19N91 RepH12 n=8 Tax=Enterobacteriaceae RepID=Q19N91_ECOK1 Length = 362 Score = 363 bits (932), Expect = 4e-99, Method: Composition-based stats. Identities = 151/300 (50%), Positives = 195/300 (65%), Gaps = 9/300 (3%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSR-TDATEELTRLSLA 60 +K SG+ + L PN+N TVQ +ALMRLG+FVP+ KS+ + + DAT+EL LSL Sbjct: 21 EKESGKDIILRPNSNRTVQSIALMRLGLFVPSPKSVGRQNREYKTVGFDATKELQTLSLM 80 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 +EGF + I G RL+M DFKTW+GII ++A H + D + L F EF KLC + +SS Sbjct: 81 ESEGFTNISIVGERLNMSVDFKTWMGIIRTYANHPINNDTISLKFTEFLKLCTPENYRSS 140 Query: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 R+RI SL+R+A +SF T ++ Y THLVQSA D E D V LQ DP++FEL Sbjct: 141 TASRKRIDASLRRLASVTLSF--TSNNSSKVYTTHLVQSALLDPESDQVVLQVDPKIFEL 198 Query: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 YQ+D KVL+QLKAI L ++ESAQALYTFIESLP +P PISL RL+ RLNLK+ SQN Sbjct: 199 YQYDHKVLMQLKAIKELAKKESAQALYTFIESLPPNPIPISLTRLKNRLNLKTRANSQNA 258 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 TVR+A+E+L IGYL YTEI++ +F IH R P L N + PP + E Sbjct: 259 TVRKALEELASIGYLKYTEIKKDGKVYFQIHKRDPDLNLNNTQ------PPLEVVEDEEE 312 >UniRef50_Q19NT3 RepA n=9 Tax=root RepID=Q19NT3_ECOK1 Length = 291 Score = 357 bits (916), Expect = 3e-97, Method: Composition-based stats. Identities = 118/274 (43%), Positives = 180/274 (65%), Gaps = 5/274 (1%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAE 63 SG+ LTPN++ +VQPVAL+RL VF P + +N +N DA++EL+ + +AR+E Sbjct: 17 ESGKTYQLTPNSSKSVQPVALLRLSVFTPVG-TKENRDRNF--EVDASDELSCMEIARSE 73 Query: 64 GFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRL 123 G+D ++ITG +L M DFK W+GII +F+++ +K+ F EFAK+CGI S+ ++R Sbjct: 74 GYDDIKITGVKLSMSTDFKCWLGIIMAFSKYGFTSEKITQTFNEFAKMCGISSTNINKRT 133 Query: 124 RERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQF 183 R R SL +A V++FS D + R +THLVQ A D + D V+L DP ++ELY++ Sbjct: 134 RARFKESLMNLASVVLAFS--DSRSGRFTVTHLVQKAMIDPKSDTVELVGDPSMWELYRY 191 Query: 184 DRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVR 243 D K LL L+ + L ++E+AQ+LY + E++P +++ RLR RL L +P+ +QNQ +R Sbjct: 192 DHKTLLSLQVLYILAKKEAAQSLYIYFEAMPAGTLFVNMKRLRERLLLTTPIRTQNQIIR 251 Query: 244 RAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRL 277 +AM +L IGYLDY E+++GR F I R P+L Sbjct: 252 KAMRELESIGYLDYQEVKKGRDIQFQIFKRSPKL 285 >UniRef50_P05833 Protein repA n=9 Tax=root RepID=REPA_ECOLX Length = 288 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 123/272 (45%), Positives = 178/272 (65%), Gaps = 5/272 (1%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEI 70 LT N NT+QPVA MRLG+FVP + + D +E + AR EGF ++I Sbjct: 22 LTVNELNTIQPVAFMRLGLFVPKP----SRSSDYSPMIDVSELSSTFEFARLEGFTDIKI 77 Query: 71 TGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPS 130 TG RLDMD DFK W+GI+ +F+++ + ++++L F EFAK CG P + ++LR I S Sbjct: 78 TGERLDMDTDFKVWIGIVKAFSKYGISSNRIKLKFSEFAKDCGFPGKKLDKKLRAHIDES 137 Query: 131 LKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQ 190 L++I G ISF R + + Y T L++ AY++ + D+V+L+AD RL+ELY FD +V+LQ Sbjct: 138 LRKIRGKSISFKRGKDSQS-AYHTGLIKIAYFNADTDVVELEADERLWELYYFDYRVVLQ 196 Query: 191 LKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLR 250 L AI AL R E AQALYTF+ SLP +PAPIS RLR RL+L S V QN+ +++A+ +L Sbjct: 197 LHAIKALPRLEVAQALYTFLASLPSNPAPISFERLRERLSLISQVKEQNRIIKKAITKLI 256 Query: 251 EIGYLDYTEIQRGRTKFFCIHYRRPRLKAPND 282 +IG LD + +++G+ + IH R P+L N+ Sbjct: 257 DIGNLDASMVKKGQENYLIIHKRSPKLSVINE 288 >UniRef50_C8UR54 Probable replication protein n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UR54_ECO1A Length = 294 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 129/278 (46%), Positives = 178/278 (64%), Gaps = 6/278 (2%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSL----KNSKKNTLSRTDATEELTRLSL 59 ++GE+ +L PNNN+T+QP+AL+RLGVFVPTLKS + T + T+ATEEL+ L + Sbjct: 17 NTGEIHSLKPNNNSTIQPIALLRLGVFVPTLKSTNVALRRGSSVTTNTTNATEELSSLKI 76 Query: 60 ARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKV-ELPFVEFAKLCGIPSSQ 118 EG++ +EI GPRLDMD DFK WVGI + + D + LPF EFA CG P + Sbjct: 77 VEQEGYEGIEIHGPRLDMDTDFKVWVGITSALFDYAPDDDGIITLPFSEFADRCGYPRKR 136 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEK-HTREYITHLVQSAYYDTERDIVQLQADPRL 177 S+ R+ I SL RI TV+ F K H +L+ + +TE D++++Q +L Sbjct: 137 LSKAFRKSIDDSLTRIQQTVVKFRFPAAKGHLNNINVNLLAYSSLNTELDVIEIQPQKQL 196 Query: 178 FELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFS 237 ELY D K +L+LK ++ L R+E+A+ LYTF E+LP +PAP+S+ RLRARLNLKS V Sbjct: 197 SELYYVDYKRILKLKMLDKLGRKETAKVLYTFFEALPANPAPVSIERLRARLNLKSSVSV 256 Query: 238 QNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRP 275 QN +R+AM+ L I YL ++EI+ GR F IH R P Sbjct: 257 QNSVIRKAMKDLEAIEYLKFSEIKNGRKIGFQIHKRNP 294 >UniRef50_A6TIP8 DNA replication n=2 Tax=Enterobacteriaceae RepID=A6TIP8_KLEP7 Length = 298 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 122/270 (45%), Positives = 168/270 (62%), Gaps = 4/270 (1%) Query: 7 ELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFD 66 E L P+ N TVQPVALMRLG+F+P+LK +N DA+ EL L LARAEG+ Sbjct: 19 ENKKLMPSRNATVQPVALMRLGLFLPSLKRKGKDTENI--SIDASSELQSLELARAEGYT 76 Query: 67 KVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRER 126 + ITGPRL M+ DFK WVGII +F+++ + +ELPF EFA CG S + LR R Sbjct: 77 DIRITGPRLSMETDFKVWVGIILAFSKYGLNSSTIELPFSEFATFCGFSSKDKDKGLRTR 136 Query: 127 ISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRK 186 ++ SL R+ T I + EK ++ L+ +D + DI++L AD L+ELYQFDR+ Sbjct: 137 LADSLIRLRSTTIKLA--SEKDRNGVVSGLLSRGKWDEKDDIMELTADESLWELYQFDRQ 194 Query: 187 VLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAM 246 VLLQ+ I L + +AQALYTFIESLP P P+S AR++ RL L SP QN+ + +A+ Sbjct: 195 VLLQMFIIRQLANKGTAQALYTFIESLPERPIPLSFARIKRRLMLTSPNNQQNRVINKAI 254 Query: 247 EQLREIGYLDYTEIQRGRTKFFCIHYRRPR 276 ++L+ +GYLD +++ I R PR Sbjct: 255 DELKAVGYLDGDVVKKDGEWHLIITRRTPR 284 >UniRef50_B4ABW5 Replication protein RepA n=1 Tax=Salmonella enterica subsp. enterica serovar Newport str. SL317 RepID=B4ABW5_SALNE Length = 295 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 136/284 (47%), Positives = 181/284 (63%), Gaps = 9/284 (3%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 + KS+GE +TL + ++VQ V LMRLGVFVPTLKS +K+ T + +A+++L +LS+ Sbjct: 15 VQKSTGEEITLVSTSESSVQVVPLMRLGVFVPTLKSTDKAKE-TRTVVNASKDLNQLSIY 73 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNV---IGDKVELPFVEFAKLCGIPSS 117 RAEGFD V I GPRLDMD DFKTW+GII K+ LPF EFAK CG P + Sbjct: 74 RAEGFDNVVIKGPRLDMDTDFKTWIGIISVLTDRAFPMGSDGKITLPFSEFAKRCGFPRA 133 Query: 118 QSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQ---SAYYDTERDIVQLQAD 174 + LR+++ S+ I TV+ FSR K T + TH VQ + D +DIV L Sbjct: 134 RMKAELRQKLKDSIVNIMSTVVEFSRDAGKPTEK--THFVQLMGESTIDIAKDIVVLTPS 191 Query: 175 PRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSP 234 L +LY + +VLL+LKA+ L R+ESAQALY ++E+LP DP P+ + RLR RLNL S Sbjct: 192 MSLRDLYASEYRVLLKLKALKELARKESAQALYLYLEALPADPFPVKMERLRERLNLTSR 251 Query: 235 VFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLK 278 QNQ +R+AM+QL +IGYL Y E++ GR F I R P+LK Sbjct: 252 PALQNQVIRKAMKQLEDIGYLKYQELKNGRDIAFKIIERNPKLK 295 >UniRef50_C1ME85 RepA protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1ME85_9ENTR Length = 288 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 110/280 (39%), Positives = 165/280 (58%), Gaps = 12/280 (4%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 S+G+ LT N++VQPV+L+RLGVF P+ ++ N TE L+ L +A+ Sbjct: 18 QPSTGK---LTVTKNSSVQPVSLLRLGVFTPSCRTEATVTLN------VTEALSSLEIAK 68 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHN--VIGDKVELPFVEFAKLCGIPSSQS 119 EG+ ++ITGP L+ DF+ W I+HSF+ + G+++++PF EFAKLCG PS + Sbjct: 69 QEGYTDIKITGPMLNYFQDFRCWTAIVHSFSVSPDALKGNRIKMPFSEFAKLCGYPSKRY 128 Query: 120 SRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFE 179 S +LR I+ SL +I I F + + T+ + L++ A +D E D + L+AD RL++ Sbjct: 129 STKLRNEIADSLTKIRSKSIRFEK-NPGITKFKVAGLLKEAEFDGESDYIILEADERLWD 187 Query: 180 LYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQN 239 LY+ D LL+ K + L R E+AQALYTF E+LP+ PAPI+ RLR RL L + QN Sbjct: 188 LYRSDHLTLLRKKPLELLTRNETAQALYTFFEALPQHPAPITFDRLRQRLLLNGRIAEQN 247 Query: 240 QTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 + +R A++ L IGYL + + I R P+L Sbjct: 248 RKMRTALDVLASIGYLKFYYLVDTSVPTIQITDRNPKLTG 287 >UniRef50_B5RKG1 Initiator replication protein RepB n=1 Tax=Klebsiella pneumoniae 342 RepID=B5RKG1_KLEP3 Length = 299 Score = 323 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 122/287 (42%), Positives = 178/287 (62%), Gaps = 11/287 (3%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNS---KKNTLSRTDATEELTRL 57 +++++GE++TL+ + +VQ V LMRLGVFVPTLKS + K N S +A+++L L Sbjct: 15 INQTTGEVITLSSTSETSVQTVPLMRLGVFVPTLKSTNKAIAKKSNVGSNINASDDLRHL 74 Query: 58 SLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGD---KVELPFVEFAKLCGI 114 LA++EGF+++ I+GPRLDMD DFK W GII + + + + + F EFA CG Sbjct: 75 ELAKSEGFERITISGPRLDMDTDFKVWTGIISVLTDNELESNEDGTISIRFTEFAMRCGF 134 Query: 115 PSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQ---SAYYDTERDIVQL 171 + RE+I SL+++ V+ FS+ ++ T +T VQ + D D V L Sbjct: 135 SRGRLKAEFREKIKDSLRKLMSNVVEFSK--DRGTNIEVTKFVQLIGESTVDIGNDKVIL 192 Query: 172 QADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNL 231 L +LY + K+LL+L+A+ AL R+ESAQALYTFIE+LP +P P+S+ R R RL+L Sbjct: 193 TPSKTLKDLYVGEYKILLKLRALKALARKESAQALYTFIEALPPNPIPVSIERFRKRLSL 252 Query: 232 KSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLK 278 S QN TVR+A++QL +IGYL+Y E++ G F I R P LK Sbjct: 253 TSRPALQNSTVRKALKQLEDIGYLEYQELKEGNKIAFQIIKRNPSLK 299 >UniRef50_Q08088 Replication protein n=7 Tax=Enterobacteriaceae RepID=Q08088_ECOLX Length = 293 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 117/279 (41%), Positives = 169/279 (60%), Gaps = 8/279 (2%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARA 62 K SGE++ L P T+QP L+RLGVFVPTLKS + + DATE L+RLS+ Sbjct: 17 KDSGEVIQLFPTLKQTIQPKVLLRLGVFVPTLKSTDKGGRKS-HHIDATEPLSRLSIVEG 75 Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGD-KVELPFVEFAKLCGIPSSQSSR 121 EG+ +++I GPRLDMD DFK+W GI+++ + + + ++EL F EFAK CG + + + Sbjct: 76 EGYSQIQIYGPRLDMDTDFKSWCGIVYALSNRPLDSEGQLELNFPEFAKFCGFDTKRIDK 135 Query: 122 RLRERISPSLKRIAGTVISFSR----TDEKHTREYITHLVQSAYYDTERDIVQLQADPRL 177 +L+ER SL RIA T ISF + TD++ T HLV+S YYD+ + ++ + +L Sbjct: 136 QLKERFDASLTRIARTNISFIKKIPGTDDQITIN--MHLVESTYYDSSTGKIIIKPNSKL 193 Query: 178 FELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFS 237 LY+ D K L LK + L R+ESAQALY ++ LP I RLR RL L S + + Sbjct: 194 NTLYRVDGKTRLYLKTLQKLARKESAQALYLYLAELPSTFYRIGFDRLRGRLQLSSHLGN 253 Query: 238 QNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPR 276 QN TV++A+ QL+EIG+L+Y+ + I R + Sbjct: 254 QNATVKKALGQLKEIGFLEYSIDKENGDYVLNILKRNMK 292 >UniRef50_Q8E8A8 Plasmid replication protein RepA n=2 Tax=Shewanella RepID=Q8E8A8_SHEON Length = 293 Score = 320 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 161/278 (57%), Gaps = 7/278 (2%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 + +SG+L+T+ ++ +VQP L+R GVF P + + N + D + +L L + + Sbjct: 16 NLNSGKLLTI--SSTTSVQPNVLLRTGVFTPVGR---RTNANDVKAQDLSNDLVNLDVCQ 70 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 EG+D V + G RL+++ DFK W GI+ F+++ + V+L F EFAK C PS + + Sbjct: 71 KEGYDLVTVRGQRLNIETDFKVWCGIVLVFSKYGYSSNTVKLTFSEFAKFCSYPSRRFDK 130 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 LR++I SL RI +SF R + + + T ++ A YD E DIV+L AD L++LY Sbjct: 131 NLRKQIGDSLGRIQSQSLSFRRKNSE--KAVHTGMLLRAMYDGEEDIVELMADETLWDLY 188 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQT 241 + D +VL+ L+ + L R E AQ LY + SLP +P P+S RLR RL L++ N+ Sbjct: 189 RLDYQVLVSLRVLEKLPRAEVAQCLYLYFTSLPENPHPVSFERLRERLRLETSKKEANRK 248 Query: 242 VRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 ++ +++L IGYL + + +++ I R +L+A Sbjct: 249 IKTGIQKLESIGYLSGSFAVKNGEQYYLIDQRYKKLEA 286 >UniRef50_C9Y5R6 RepFIB replication protein A n=3 Tax=Enterobacteriaceae RepID=C9Y5R6_CROTZ Length = 230 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 96/202 (47%), Positives = 133/202 (65%), Gaps = 5/202 (2%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 K SGE LTPN+N TVQPVAL+RL VF P + K++ L DA+EEL+ L +AR Sbjct: 15 KKESGESYELTPNSNKTVQPVALLRLSVFTPVSP-KEKGKRDFL--IDASEELSSLEVAR 71 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 EG+ ++I G +L M DFKTW+GII +F+++ DK+ LPF EFA++CG+ + + Sbjct: 72 QEGYTNIKIQGAKLGMSTDFKTWIGIISAFSKYGYTSDKICLPFSEFARMCGLRPTDING 131 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 R R R+S SL ++ +SF D K R +THLVQ A D E + V++ DP L+ELY Sbjct: 132 RARNRLSESLFNLSSVTLSFRSQDGK--RSLVTHLVQRAQLDMETNEVEIVGDPSLWELY 189 Query: 182 QFDRKVLLQLKAINALKRRESA 203 ++D KVLL LKA++AL R+ESA Sbjct: 190 RYDHKVLLGLKALSALSRKESA 211 >UniRef50_A1VQ75 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=A1VQ75_POLNA Length = 293 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 29/235 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +++R +F ++ ++ R+ A EG K+ TGP+LD D Sbjct: 48 PNSVLRSALF----GVVRRGPRSFQ---------QRVQKASVEGI-KIIHTGPQLD-QAD 92 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W + AR +G +++ +F K G + +S E + + R+A +V+ Sbjct: 93 LDVWEQALQ-LARTGGLGCRIQFTASQFLKSIGRGNGKSQH---EWLKGAFARLAASVVE 148 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRR 200 + H R Y ++ D + ++ +P++ ELY D ++ ALK+R Sbjct: 149 IK---DAH-RAYFGAILHHGGRDDKTGRYVIEMNPKIIELYGLDGWSSVEFDQRMALKKR 204 Query: 201 ESAQALYTFIESLPRDPAPI---SLARLRARLNLKSPVFSQNQTVRRAMEQLREI 252 AQ L+ + S + P P+ +L RL N F Q+ ++ A+E+L E+ Sbjct: 205 PLAQWLHGYYSSHAK-PFPVKVETLHRLCGSQNAAIKGFKQD--LKSALEKLEEV 256 >UniRef50_Q8RNX4 Replication protein RepA1 n=1 Tax=Serratia sp. 2-68 RepID=Q8RNX4_9ENTR Length = 208 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 93/135 (68%), Gaps = 2/135 (1%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEI 70 LTPN+N+TVQPVALMRLG+FVP+LK + K DA+EEL++L +A+AEG+ + I Sbjct: 22 LTPNSNSTVQPVALMRLGLFVPSLK--RKGKNVESVTIDASEELSKLEIAQAEGYSNITI 79 Query: 71 TGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPS 130 +GPRL M+ DFK WV +I SF+++ + +ELPF EFA G P + +R LRERIS S Sbjct: 80 SGPRLSMETDFKVWVAVILSFSKYGRDTNTIELPFSEFASFAGYPDKEKTRVLRERISGS 139 Query: 131 LKRIAGTVISFSRTD 145 L RI T +S S + Sbjct: 140 LTRIRSTTLSLSSKN 154 >UniRef50_Q47035 Rep protein (Fragment) n=2 Tax=Escherichia RepID=Q47035_ECOLX Length = 66 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 65/66 (98%), Positives = 65/66 (98%) Query: 260 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLE 319 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPS AEKVSPEMAEKLALLEKLGITLDDLE Sbjct: 1 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSSAEKVSPEMAEKLALLEKLGITLDDLE 60 Query: 320 KLFKSR 325 KLFKSR Sbjct: 61 KLFKSR 66 >UniRef50_C7RW93 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RW93_9PROT Length = 277 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 16/210 (7%) Query: 54 LTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCG 113 L +LA +G V+ TG +L+ + D W + H AR + +G E K G Sbjct: 62 LKEATLASQKGIA-VKFTGEQLNQE-DLSVWETLAH-LARQHPLGCMCEFTAHGLLKSLG 118 Query: 114 IPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQA 173 + Q+ +++ ++ R+ + + + Y LV+S D +++ Sbjct: 119 QHTGQTQH---KQLHSTIIRLTACAVEITHE----GKTYFGQLVKSGLKDELTSHYRIEL 171 Query: 174 DPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLR---ARLN 230 + L L+ ++ L + L+ + AQAL+ F S R P PI L LR N Sbjct: 172 NRELIRLFGENQWTALDWQQRQRLRGKLLAQALHAFYSSH-RQPFPIKLDTLRGYVGSRN 230 Query: 231 LKSPVFSQNQTVRRAMEQLREIGYLDYTEI 260 ++ F +R A+++L IG+L +I Sbjct: 231 VQRAGFK--VKLRIALDELVTIGFLTSYDI 258 >UniRef50_Q3SEY9 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SEY9_THIDA Length = 325 Score = 87.0 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 32/254 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +R +F ++ K+ + R E+L L G ++ TG RLD D Sbjct: 53 PNVALRSALF----GAIAKGKRRYVER----EQLAAL------GDIQILYTGQRLD-QGD 97 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 + ++H+ ARH +G++ + KL G S + R + L R+ + Sbjct: 98 LDAYQSVLHA-ARHQAMGEQCRVTSYALLKLMG---KTDSGKNRATLHNRLTRLRANAVE 153 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRR 200 YI L+ A+ + + P+L L+ D ++ +AL + Sbjct: 154 IKHG----RYNYIGGLINEAFRCEKTQEWVIVLTPKLRVLFAADEFTHIEWAVRHALDGQ 209 Query: 201 ESAQALYTFIESLPRDPAPI---SLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYL-- 255 AQ L+ F S + P P+ +L RL F+Q T+R+A+ + E + Sbjct: 210 PLAQWLHGFYASHAK-PYPMKIETLHRLCGSETADLWKFAQ--TLRKALNAVTEASAVHG 266 Query: 256 -DYTEIQRGRTKFF 268 + RG Sbjct: 267 ERFNYTVRGDVVHI 280 >UniRef50_C5ANI6 TrfA family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5ANI6_BURGB Length = 287 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 109/274 (39%), Gaps = 41/274 (14%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P L R +F + K+ + R +A EG++ + TG L D D Sbjct: 39 PNPLARCALFTASGKTEPRI------------DFKRSVIASLEGYE-IAYTGEELRQD-D 84 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVI- 139 ++ ++H AR +G ++++ G + + ER+ S+ R+ + Sbjct: 85 QDVFLQLVHV-ARQEDLGTQLQVTVHSILVALGWGRA---KDAYERLHKSVARLREGTVW 140 Query: 140 -------SFSRTDEKH---TREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLL 189 + + +D+ ++ + +L+++ D E D L D R+ L+ D + Sbjct: 141 VTFSAGGAVAESDDAKVSLSKGFTGNLIKA--LDWEGDKWMLSLDQRMIALFGSDGYTAI 198 Query: 190 QLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQ----NQTVRRA 245 + AL A+ L++F + R+P P ++ +L L Q ++++A Sbjct: 199 NWEERLALG--PLAKWLHSFYFTH-REPLPYTVRKLYE---LCGSKAKQLKHFRASLKKA 252 Query: 246 MEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 +++L +G+L + K F P L A Sbjct: 253 LDELVAVGFLVEWSLDPKSDKIFVKRRHTPALTA 286 >UniRef50_Q21QG5 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QG5_RHOFD Length = 325 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 94/242 (38%), Gaps = 30/242 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +R G+F KS++ EE+ +A F V TG L D D Sbjct: 83 PNGFLRSGLFTARSKSVR-------------EEIKGTRIASLSNF-DVHYTGCELRQD-D 127 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ + + AR IGDK+ K G + R+ ++R+ T + Sbjct: 128 LSAWIA-LMTRARLQPIGDKIYFVAYSLVKDLGWS---LNSASYARLKSCIERLKLTSLK 183 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDI----VQLQADPRLFELYQFDRKVLLQLKAINA 196 D+K Y+ LV+ YD D ++ +P + +L+ + L+ + Sbjct: 184 IGSKDQKS--AYVGSLVRDFAYDELDDKGNVSWMIRVEPGIAKLFVDENTTFLEWEERKR 241 Query: 197 L-KRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRR--AMEQLREIG 253 L R AQ L+ + S P PIS+ +LR L N +R A+E L E G Sbjct: 242 LGTRNSLAQWLHGYYSSH-TIPIPISIGKLRE-LCESGQKSLPNFKIRTRQALELLVENG 299 Query: 254 YL 255 L Sbjct: 300 CL 301 >UniRef50_B9TFM5 TrfA transcriptional repressor protein, putative n=1 Tax=Ricinus communis RepID=B9TFM5_RICCO Length = 299 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 24/249 (9%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P ++R +F +N R EE+ + EG ++ TG L ND Sbjct: 57 PNEILRSALF-------NAKNRNEARRFFKNEEIGVI----GEGV-RITYTGEELR-QND 103 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ +IH A+ G VE + S+ + + ER+ SL+R+ T +S Sbjct: 104 ESVWLQLIH-LAKAAPAGRPVEFTAYSMVQALRTAKSKPNPKHIERLCESLRRMQATSLS 162 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERD-----IVQLQADPRLFELYQFDRKVLLQLKAIN 195 + R ++ + E ++Q P L EL+ LQ + Sbjct: 163 V--YSPRLGRGISLSMIPRFEWQDEASGTRLPKWRVQIAPELVELFGDMHYTHLQWRQRL 220 Query: 196 ALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSP-VFSQNQTVRRAMEQLREIGY 254 L A L+ + S R P P+ L L+ + Q + A+ +L+ +G+ Sbjct: 221 DLP-SGLATWLHGYFASH-RKPMPVKLTTLKKGAGCTTETPRKFKQLIVAALTELQRVGF 278 Query: 255 LDYTEIQRG 263 L ++ Sbjct: 279 LKRWDVDDN 287 >UniRef50_Q120X5 TrfA n=2 Tax=Polaromonas RepID=Q120X5_POLSJ Length = 340 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 27/241 (11%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P L+R G+F T+ +D E + + +A ++ + TG L + D Sbjct: 94 PNPLVRSGLF-------------TVGNSDKREYVPDMVIASLSNYE-IRYTGSELRQE-D 138 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ +I+ AR I + + + K G + +R+ ++R+ T + Sbjct: 139 LSVWMSLIN-LARKKPISEAIYFTGYQVVKDLGW---RMHSESYKRVQDCIERLKVTGLK 194 Query: 141 FSRTDEKHTREYITHLVQSAYY----DTERDIVQLQADPRLFELYQFDRKVLLQLKAINA 196 T H Y L++ + + ++ +PR+ L+ D LL+ + Sbjct: 195 I--TTRGHESAYSGSLIRDYGWTERDEAGNQKWMVRFEPRISALFMEDTTTLLEWEMRKK 252 Query: 197 L-KRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYL 255 + R A L +F + RDP P SL ++ K + S + VR A+ +L E +L Sbjct: 253 IGPRSTLALWLLSFYSTH-RDPEPNSLGKIYELCRSKDTLSSFRRNVRNALAKLVEKQFL 311 Query: 256 D 256 Sbjct: 312 K 312 >UniRef50_B1J370 Putative uncharacterized protein n=1 Tax=Pseudomonas putida W619 RepID=B1J370_PSEPW Length = 288 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 30/268 (11%) Query: 44 TLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVEL 103 + + + ++ +A+ + +E T L + NDF ++ I+ + + +E Sbjct: 30 FFNSVRSGDSYNKVKIAKYFQYKDLEFTSESLSIFNDFDVFLFIVTETVKQK--SNVIEF 87 Query: 104 PFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYD 163 F + A GI + +R ++ ++ ++F + + Y ++ + Sbjct: 88 WFDDLADFLGIEPNHKDTYF-KRYCETISKLEQIHVAFFLDNVR----YSLRFLELSPAQ 142 Query: 164 TERDIVQLQADP-------RLFELYQFDRKVLLQLKAINALKRRESAQALYTFI---ESL 213 + ++L+ D + ELY RK + LK+ + LY + Sbjct: 143 DKSKKLRLKVDQNYLNFFDSVNELYGVQRKTIKSLKSDYQ-------RILYLMYVTNRAN 195 Query: 214 PRDPAPISLARLRARL--NLKSPVFSQNQTVRRAMEQLREIGYL-DYTEIQRGRT-KFFC 269 + + L + R ++ + F N +R+A E L+ G + D++E+++G F Sbjct: 196 AENHFSVDLLKFRFQVPDTMAERKFVYN--IRKANEALKLKGLIEDFSEVKKGGKTVSFK 253 Query: 270 IHYRRPRLKAPNDESKENPLPPSPAEKV 297 + Y L ++ + + E Sbjct: 254 VKYTYANLHPKKEKKTDISGFENQGEDE 281 >UniRef50_B0KMB8 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMB8_PSEPG Length = 214 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 10/179 (5%) Query: 71 TGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPS 130 TG LD D W ++H A+ +G + ++ KL G S + R+ + Sbjct: 4 TGAILD-QGDLNVWGAVLHQ-AQEQELGSECKVTAYRLLKLLG---KTDSGKNRKDLEAC 58 Query: 131 LKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQ 190 + R+ T + + I H V + + + ++ + +L L+ + + Sbjct: 59 ISRLKATALQIEVGGYSYEGSLI-HEVYRGQSERSKRLYVIRLNSKLHVLFNGKQYTNVN 117 Query: 191 LKAINALKRRESAQALYTFIESL--PRDPAPISLARLRARLNLKSPVFSQNQTVRRAME 247 AL + AQ L+ F S P D +L +L F ++ +RR++E Sbjct: 118 WSVRQALHGKPLAQWLHGFYSSHAKPYDYKVETLHQLCRSRAKSLSDFKKD--LRRSLE 174 >UniRef50_D1EBW3 TrfA family protein n=1 Tax=Neisseria gonorrhoeae SK-92-679 RepID=D1EBW3_NEIGO Length = 292 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 85/252 (33%), Gaps = 25/252 (9%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P R +F + + +E++ ++ TG L +D Sbjct: 57 PNDFARSCLFTARNHRVPRKTFSREKLFHISEKV------------EILYTGTELRSVDD 104 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ ++ + R +G+ VE + K G + S +R+ SL R+ T I Sbjct: 105 ELIWMQLV-DYCRRFPLGNYVEFDIRQLIKDIGWDT---SGAYYKRVRESLSRMKATEIY 160 Query: 141 FSRTDE---KHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINAL 197 + I + V E ++ D +L L+ + + L Sbjct: 161 IKNGNTYGVSGGISLIDNYVGIENIKGEPTRYKVSIDKKLIVLFAGNTFSNIPWSQYKKL 220 Query: 198 KRRESAQAL--YTFIESLPRDPAPI-SLARLRARLNLKSPVFSQNQTVRRAMEQLREIGY 254 A+ L Y F P +P PI + + + SP +QNQ ++ +L E Sbjct: 221 S--PMARRLTDYVFSHKHP-NPIPIPAFLAMCGSDQINSPAKTQNQNAKKICAELTEAQL 277 Query: 255 LDYTEIQRGRTK 266 + + G+ Sbjct: 278 VKTAFVLSGKII 289 >UniRef50_C4UAU7 Plasmid-related transcriptional repressor protein n=2 Tax=Yersinia RepID=C4UAU7_YERAL Length = 288 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 106/268 (39%), Gaps = 28/268 (10%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAE 63 + GE + PN+ + R +F P NSK N + T ++R+ Sbjct: 40 NIGESYRIMPNH--------IARSSLFAPV-----NSKNNLVYA--GTTLVSRVDAV--- 81 Query: 64 GFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRL 123 ++ G +LD ++ W+ ++ ++H++ G+ + + +F + G +S ++ Sbjct: 82 ----IKFWGEQLD-ESQADVWMQAMYEASKHSL-GEPIVISRSKFLRAIGRNTSGANY-- 133 Query: 124 RERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQF 183 E + S+ + + S + H++ YD E Q DPR +Y Sbjct: 134 -EWLHRSMLCLEQAMFSIETNRFATGSQSPLHMIDKFEYDNEIKSHIFQIDPRWIRMYYN 192 Query: 184 DRKVLLQLKA-INALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTV 242 + L+ ++ ++ A+AL I + SL L+++L + ++ Sbjct: 193 NEFSLINWSQRLSFFHNQDIAKALQRLILTSNEQQQKHSLEWLKSKLIYTGRLRDFKNSI 252 Query: 243 RRAMEQLREIGYLDYTEIQRGRTKFFCI 270 RA +L+ +G + I+ G + Sbjct: 253 ERAGAELKRVGIISDFCIEAGSKGKLQV 280 >UniRef50_A0B4V8 TrfA family protein n=4 Tax=Burkholderia RepID=A0B4V8_BURCH Length = 285 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 30/243 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P AL R +F N K+ R+ + L +A +G + + +G L D D Sbjct: 41 PNALARSALF--------NVNKSNAPRSRMEKAL----IASVDGVE-ISFSGEELRQD-D 86 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 ++ ++H AR + +KVE K G + S + +R+ +L+R+ + Sbjct: 87 ADVFLEVLH-LARDTQLNEKVEFTGYSVLKSLGWGT---SVKCYDRLVTTLERLQAGQVK 142 Query: 141 FSRTDEKHT--REYITHLVQSAYYDTERD---IVQLQADPRLFELYQFDRKVLLQLKAIN 195 T K I + +T D +P + L+ D L + Sbjct: 143 VRFTGNKKGFVGSLIRKFLWKEGTETGTDGKTRWVAYVEPEIVALFSDDDYTRLAREQRQ 202 Query: 196 ALKRRESAQALYTFIESLPRDPAPIS---LARLRARLNLKSPVFSQNQTVRRAMEQLREI 252 L R E ++ L+T+ + P S L R + F N +++A+++L + Sbjct: 203 RL-RYELSKWLHTYYHTH-AVPFAHSVRFLHRQCGSQTKELFHFRAN--LKKALDELVKE 258 Query: 253 GYL 255 G+L Sbjct: 259 GFL 261 >UniRef50_B3E1G9 TrfA family protein n=3 Tax=Desulfuromonadales RepID=B3E1G9_GEOLS Length = 279 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 9/202 (4%) Query: 64 GFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRL 123 G +V G L D++ W+ ++H A+ +GD ++ F K+ G P + Sbjct: 77 GDGQVIYRGEELRQDDEL-VWLHLMH-LAKKTRLGDCIDFTPYSFIKMLGWP---IKGQS 131 Query: 124 RERISPSLKRIAGTVISF--SRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 +R+ L R+ T I F R D + I + ++ + L+ Sbjct: 132 YDRLRVCLSRMQATAIRFQSKRLDSFISVSLILKFRSRNDNNETLSRWEVWVGEEMRLLF 191 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQT 241 + + + AL A L+ + S R P P+ L + + Sbjct: 192 DEEFLTRVNWETRRALP-DGIASKLFGYWSSH-RKPFPVKTETLIKLCGSEMELRHFRIE 249 Query: 242 VRRAMEQLREIGYLDYTEIQRG 263 +R+A++ L ++ +L+ E + Sbjct: 250 LRKALDVLVKVSFLESWEFRED 271 >UniRef50_A1WSX7 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WSX7_VEREI Length = 273 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 23/178 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +R +F +++ ++ + LA +G + + TG RLD D Sbjct: 50 PNGFLRSALF----GAIRKGRRRFVKGE---------QLAALDGIE-IHYTGERLD-QGD 94 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 + ++H+ R +G + + KL G + + R + ++R+ I Sbjct: 95 LDVYESVLHAV-RLQELGSQCRVTSYALLKLMG---KTDTGKNRATLLTRIERLRANAIR 150 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALK 198 + +I LV AY D E + +P+L LY D+ K LK Sbjct: 151 IK----QERYSFIGGLVDEAYKDEETQEWVIVLNPKLRALYGADQFTPFPFKVETLLK 204 >UniRef50_Q1H9T9 Trans-acting replication factor A n=1 Tax=Plasmid QKH54 RepID=Q1H9T9_9ZZZZ Length = 373 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 80/237 (33%), Gaps = 25/237 (10%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P + R +F K + L + ++ +G L ++D Sbjct: 141 PNDIARTALFTVRNKRKPR------------DALQSQPIYSYNQDVQITFSGIELRAEDD 188 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W ++ +++ IG + F E P + + ++ SL R+ + + Sbjct: 189 ELVWQQVLE-YSKRFPIGSPITFTFYELCSDLAWP---INGKYYKKAEDSLTRLQTSALQ 244 Query: 141 FSRTDEKHTREYITHLVQS-AYYD--TERDIVQLQADPRLFELYQFDRKVLLQLKAINAL 197 F + L++ D Q++ + + L+ D + L Sbjct: 245 F--QSRRLGNMVSLSLLRRFGVLDRGKRTSRCQVELEDEMVYLFAGDHYSKFVWEKYREL 302 Query: 198 KRRESAQALYTFIESLPRDPAPISLARLRARL-NLKSPVFSQNQTVRRAMEQLREIG 253 + + L+ + S + P P++L + + + + + + A ++L++ G Sbjct: 303 T--PTTRRLFDYCASH-KQPYPLALEKFQKMCGSDTARAAKWKEQSKAACDELKKSG 356 >UniRef50_Q21QH1 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QH1_RHOFD Length = 268 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 86/250 (34%), Gaps = 28/250 (11%) Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIH-SFARHNVIGDKVELPFV--EFAKLCGIPSSQS 119 E +V G L D D W+ ++H + R D+VE+ F F G + Sbjct: 26 EANLEVYFKGEELREDTDKLVWLQLMHMARGRTFNEEDQVEVTFTANRFLNDLGWDN--- 82 Query: 120 SRRLRERISPSLKRIAGTVIS-FSRTDEKHT---------REYITHLVQSAYYDTERD-I 168 S +R+S +L R+ I + + + T + H+ A + Sbjct: 83 SGACYKRLSDALDRLQNAQIKVMGKRNGRKTGWITMSYVSNVAVGHIAGKAMNKVGPNTR 142 Query: 169 VQLQADPRLFELYQ---FDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARL 225 ++ D +YQ + K Q K + + R+ L + P D I Sbjct: 143 WTVRMDHFAAHMYQAGMIEIKSDQQYKELRTMSRKILDMVL-----ASPTDLISIHRDDF 197 Query: 226 RARLNLK-SPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRP--RLKAPND 282 L L + + S Q ++ A+E+LR GY+ + P R PN Sbjct: 198 IKFLGLNPTNIRSAKQNIKVALEELRSPGYIHHFAFDAANVLHINRTAEAPINRGTPPNI 257 Query: 283 ESKENPLPPS 292 + P + Sbjct: 258 RIHKAPEMEN 267 >UniRef50_A4G755 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G755_HERAR Length = 371 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 93/272 (34%), Gaps = 42/272 (15%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVF-----VPTLKSLKNSKKNTLSRTDATEELTRL 57 + E T ++ V P AL+R +F VPTL S +L + T Sbjct: 82 RRGAETYLPTLSDVAQVLPNALLRCALFSSSRKVPTLNDQVLSGDTSLLVVNKTIASFNN 141 Query: 58 SLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDK----VELPFVEFAKLCG 113 G++ + D + + + + + V F EFAK G Sbjct: 142 VTVTLNGYELCQF---------DRIVYATCLDYYRERPLSPETENKHVGTTFYEFAKRMG 192 Query: 114 IPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTE-------- 165 S RL I SL R++ + R + + ++ D+E Sbjct: 193 RS---YSVRLHRSIRASLLRLSFAQLRIRRD---RLNLEVPKFLSVSFEDSEQGDGASAI 246 Query: 166 ------RDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAP 219 D + L+ + EL+ L+ KA++ L +F + + P Sbjct: 247 AGAPLGSDRLWLRVSESVAELFGPGAWTALERKAMDY---SGLQGWLASFYATH-QGPLW 302 Query: 220 ISLARLRARLNLKSPVFSQNQTVRRAMEQLRE 251 +S+ +L +S + + + A+++L+ Sbjct: 303 LSVKKLHEMSGYESRFSNFRKGLCDALDKLKA 334 >UniRef50_A9AX68 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX68_HERA2 Length = 1077 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 17/129 (13%) Query: 147 KHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRK-VLLQLKAINALKRRESAQA 205 + T HLV+ A V A RL EL Q D V+L+ KAI AL RRE++ Sbjct: 649 EQTDHQHPHLVEYAQRLAYLSEV---APTRLIELAQLDAPIVVLRDKAIEALSRRETSDG 705 Query: 206 LYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRR--------AMEQLREIGYLD- 256 + T IE+L A +++ LR R+ L+ P+ +R A E LR IG L Sbjct: 706 VATLIEALDDARARVAIYALR-RVLLRMPIDQALAILRNVPSTKITVAKETLRLIGDLKN 764 Query: 257 ---YTEIQR 262 Y E+ R Sbjct: 765 QAAYQELLR 773 >UniRef50_A4MFD9 Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei 305 RepID=A4MFD9_BURPS Length = 211 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 75/189 (39%), Gaps = 5/189 (2%) Query: 67 KVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRER 126 K++ TG +LD ++ W+ ++H A + +G+ + + G + R R Sbjct: 2 KIKFTGVQLD-ESQADVWMQLMHV-ASASPLGEPFNVHSASILEAMGRQVGGAEYRWLRR 59 Query: 127 ISPSLKR--IAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFD 184 +L + + V++ R + + ++ YD R L DPR +Y Sbjct: 60 AMEALYKATLIIDVVNKYRIGDGDSNGDGIRMIDRFRYDASRKQYTLVIDPRWVAMYSNQ 119 Query: 185 RKVLLQLKAINALKR-RESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVR 243 + + A+KR ++ A+ L + + L L+ +L SP+ +R Sbjct: 120 EFARIDWEKRLAIKRGQDMAKTLQRLVATSADKVQRYGLDWLKDKLQYTSPLRKFRVALR 179 Query: 244 RAMEQLREI 252 A+ +L + Sbjct: 180 AALAELERV 188 >UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8G7_9BACI Length = 422 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 83/221 (37%), Gaps = 28/221 (12%) Query: 102 ELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAY 161 + + GI S + I +K + G + F + + + + + + ++ Sbjct: 57 KFRVTDLVDKIGISS---QTSMYSYIKSVVKGLQGKTVEFKKDN----KTIVANWLVTSI 109 Query: 162 YDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTF-----IESLPRD 216 Y + V L+ +P L E + K + + + S ++ + ESL + Sbjct: 110 YAEQEGTVILKFNPDLKEFF-LQLKERFTSYQLENVIQLNSVYSIRIYELLKQYESLRKR 168 Query: 217 PAPISLARLRARLNLKSPVFSQ-----NQTVRRAMEQLREIGYLDYT--EIQRGRTKFFC 269 ++ LR +L ++ + Q ++ + A ++L E + +T E+++GR Sbjct: 169 TF--TIDELREKLGIEKSKYKQYGHLKDRVINAAKQELAEKTDISFTFQEVKKGRKVTGI 226 Query: 270 IHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEK 310 I + ++ +P+ P V P EK L Sbjct: 227 IFQ------INSRKNSSSPIQEIPHVIVVPGDQEKEQSLRD 261 >UniRef50_A9M4U4 Trans replication factor TrfA1 n=1 Tax=Vibrio sp. 0908 RepID=A9M4U4_9VIBR Length = 262 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 27/216 (12%) Query: 21 PVALMRLGVFVPTLKSLKN--SKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMD 78 P L R +F + +K L D + L GP L D Sbjct: 18 PNELARYALFTVGTSQERRYYTKPVLLGLIDGSHAPMELQFV-----------GPELRQD 66 Query: 79 NDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTV 138 D ++ ++H +AR + K++ E K G + ER+ ++R+ + Sbjct: 67 -DLDVFLELLH-YARDADLSGKLKFKRAELMKSLGWARTPF---YYERLLQCMRRLGQSN 121 Query: 139 IS--FSRTDEKHTRE--YITHLVQSAYYDTERDIVQLQADPRL-FELYQF---DRKVLLQ 190 + +R D + + +LV S Y + RL EL +F + Sbjct: 122 LEGLITRRDNGDLIQHRFNFNLVDSFEYKDVNGAMARFWHYRLPVELVKFFTASGFARID 181 Query: 191 LKAINALKRRESAQALYTFIESL-PRDPAPISLARL 225 LK ALK A+ L + S + +S+ ++ Sbjct: 182 LKRRQALKNNHIAKWLQFYFASHKANNKYAVSVEKV 217 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q52219 RepFIB replication protein A n=58 Tax=Bacteria R... 419 e-116 UniRef50_Q46775 RepI n=11 Tax=Enterobacteriaceae RepID=Q46775_ECOLX 378 e-103 UniRef50_Q934T6 Replication protein repA n=29 Tax=Enterobacteria... 343 6e-93 UniRef50_C8QB82 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b... 342 7e-93 UniRef50_Q19N91 RepH12 n=8 Tax=Enterobacteriaceae RepID=Q19N91_E... 313 5e-84 UniRef50_Q19NT3 RepA n=9 Tax=root RepID=Q19NT3_ECOK1 300 4e-80 UniRef50_A6TIP8 DNA replication n=2 Tax=Enterobacteriaceae RepID... 292 2e-77 UniRef50_P05833 Protein repA n=9 Tax=root RepID=REPA_ECOLX 291 2e-77 UniRef50_C8UR54 Probable replication protein n=1 Tax=Escherichia... 288 1e-76 UniRef50_C1ME85 RepA protein n=1 Tax=Citrobacter sp. 30_2 RepID=... 282 9e-75 UniRef50_Q08088 Replication protein n=7 Tax=Enterobacteriaceae R... 278 2e-73 UniRef50_B4ABW5 Replication protein RepA n=1 Tax=Salmonella ente... 269 8e-71 UniRef50_B5RKG1 Initiator replication protein RepB n=1 Tax=Klebs... 266 8e-70 UniRef50_Q8E8A8 Plasmid replication protein RepA n=2 Tax=Shewane... 265 2e-69 UniRef50_C9Y5R6 RepFIB replication protein A n=3 Tax=Enterobacte... 223 9e-57 UniRef50_C5ANI6 TrfA family protein n=1 Tax=Burkholderia glumae ... 198 2e-49 UniRef50_Q3SEY9 Putative uncharacterized protein n=1 Tax=Thiobac... 189 1e-46 UniRef50_B9TFM5 TrfA transcriptional repressor protein, putative... 186 1e-45 UniRef50_C4UAU7 Plasmid-related transcriptional repressor protei... 185 2e-45 UniRef50_A0B4V8 TrfA family protein n=4 Tax=Burkholderia RepID=A... 180 5e-44 UniRef50_A1VQ75 Putative uncharacterized protein n=2 Tax=Proteob... 179 9e-44 UniRef50_D1EBW3 TrfA family protein n=1 Tax=Neisseria gonorrhoea... 179 1e-43 UniRef50_B3E1G9 TrfA family protein n=3 Tax=Desulfuromonadales R... 178 2e-43 UniRef50_Q120X5 TrfA n=2 Tax=Polaromonas RepID=Q120X5_POLSJ 178 2e-43 UniRef50_C7RW93 Putative uncharacterized protein n=1 Tax=Candida... 178 3e-43 UniRef50_Q21QG5 Putative uncharacterized protein n=1 Tax=Rhodofe... 176 1e-42 UniRef50_Q21QH1 Putative uncharacterized protein n=1 Tax=Rhodofe... 173 6e-42 UniRef50_Q1H9T9 Trans-acting replication factor A n=1 Tax=Plasmi... 172 1e-41 UniRef50_A4G755 Putative uncharacterized protein n=1 Tax=Hermini... 160 5e-38 UniRef50_Q8RNX4 Replication protein RepA1 n=1 Tax=Serratia sp. 2... 158 3e-37 UniRef50_B1J370 Putative uncharacterized protein n=1 Tax=Pseudom... 152 2e-35 UniRef50_B0KMB8 Putative uncharacterized protein n=1 Tax=Pseudom... 143 6e-33 UniRef50_A1WSX7 Putative uncharacterized protein n=1 Tax=Vermine... 122 2e-26 UniRef50_Q47035 Rep protein (Fragment) n=2 Tax=Escherichia RepID... 90 1e-16 UniRef50_A9AX68 Putative uncharacterized protein n=1 Tax=Herpeto... 68 4e-10 Sequences not found previously or not previously below threshold: UniRef50_C7RVT2 Putative uncharacterized protein n=1 Tax=Candida... 164 3e-39 UniRef50_P07676 TrfA transcriptional repressor protein n=92 Tax=... 164 4e-39 UniRef50_Q3JEY8 TrfA-related protein n=2 Tax=Nitrosococcus ocean... 159 2e-37 UniRef50_A1VX05 TrfA family protein n=1 Tax=Polaromonas naphthal... 155 2e-36 UniRef50_A1VVJ9 Putative uncharacterized protein n=1 Tax=Polarom... 148 3e-34 UniRef50_A1WSW7 Putative uncharacterized protein n=1 Tax=Vermine... 142 2e-32 UniRef50_Q0AD11 TrfA family protein n=2 Tax=Proteobacteria RepID... 141 3e-32 UniRef50_Q6AII2 Related to transcriptional repressor protein Trf... 141 5e-32 UniRef50_A4MFD9 Putative uncharacterized protein n=1 Tax=Burkhol... 107 6e-22 UniRef50_B1G3S5 Putative uncharacterized protein n=1 Tax=Burkhol... 102 2e-20 UniRef50_A9M4U4 Trans replication factor TrfA1 n=1 Tax=Vibrio sp... 96 1e-18 UniRef50_A9I2G9 TrfA-related protein n=1 Tax=Bordetella petrii D... 94 5e-18 UniRef50_Q21TW5 Putative uncharacterized protein n=1 Tax=Rhodofe... 92 3e-17 UniRef50_A4VG61 Putative uncharacterized protein n=1 Tax=Pseudom... 79 3e-13 UniRef50_UPI00016AFE57 hypothetical protein Bpse38_35412 n=2 Tax... 78 4e-13 UniRef50_C5A9D3 TrfA family protein n=1 Tax=Burkholderia glumae ... 76 2e-12 UniRef50_C4KBK1 Putative uncharacterized protein n=1 Tax=Thauera... 69 2e-10 UniRef50_Q1MP07 NA n=2 Tax=Lawsonia intracellularis PHE/MN1-00 R... 67 8e-10 UniRef50_C9M9S4 TrfA-related protein n=1 Tax=Jonquetella anthrop... 64 7e-09 UniRef50_Q30VH2 Putative uncharacterized protein n=1 Tax=Desulfo... 60 1e-07 UniRef50_Q1MXJ2 Putative uncharacterized protein (Fragment) n=1 ... 59 2e-07 UniRef50_C1A4Q4 Putative uncharacterized protein n=1 Tax=Gemmati... 57 1e-06 UniRef50_A4JVF1 Putative uncharacterized protein n=1 Tax=Burkhol... 57 1e-06 UniRef50_B6IXW9 Putative uncharacterized protein n=1 Tax=Rhodosp... 56 1e-06 UniRef50_A7IJQ2 Replication protein A n=14 Tax=Alphaproteobacter... 56 2e-06 UniRef50_D2L841 Putative uncharacterized protein n=1 Tax=Desulfo... 55 3e-06 UniRef50_C4GNC9 Putative uncharacterized protein n=1 Tax=Kingell... 55 3e-06 UniRef50_C1XVJ4 Plasmid replication initiator protein n=1 Tax=Me... 55 4e-06 UniRef50_Q1J3K3 Plasmid replication initiator repA-related prote... 54 5e-06 UniRef50_A3T343 RepA n=2 Tax=Rhodobacteraceae RepID=A3T343_9RHOB 54 7e-06 UniRef50_A1VX58 Plasmid replication initiator protein-like prote... 54 7e-06 UniRef50_Q07GE2 RB100 n=6 Tax=Rhodobacterales RepID=Q07GE2_ROSDO 53 1e-05 UniRef50_Q1MNR9 NA n=1 Tax=Lawsonia intracellularis PHE/MN1-00 R... 52 2e-05 UniRef50_A8IP54 Replication protein A n=67 Tax=Bacteria RepID=A8... 52 2e-05 UniRef50_B9KX96 Plasmid replication initiator protein RepA n=4 T... 51 5e-05 UniRef50_B4EE90 Putative plasmid replication-associated protein ... 51 9e-05 UniRef50_B4YK20 RepA n=1 Tax=Tetrathiobacter kashmirensis RepID=... 50 1e-04 UniRef50_A8ZRM1 Plasmid replication initiator repA-related prote... 50 1e-04 UniRef50_C7JJ87 Plasmid replication initiator RepA n=16 Tax=Prot... 50 1e-04 UniRef50_C5SIJ5 RepA n=1 Tax=Asticcacaulis excentricus CB 48 Rep... 49 2e-04 UniRef50_A1VBN8 Putative uncharacterized protein n=4 Tax=Desulfo... 48 5e-04 UniRef50_C6CR33 Replication C family protein n=1 Tax=Dickeya zea... 48 5e-04 UniRef50_A0R862 Plasmid encoded RepA protein n=1 Tax=Pelobacter ... 48 5e-04 UniRef50_A9AU55 Putative uncharacterized protein n=1 Tax=Burkhol... 47 6e-04 UniRef50_A4XE01 Plasmid encoded RepA protein n=4 Tax=Sphingomona... 47 6e-04 UniRef50_Q07GB5 RepA n=4 Tax=Rhodobacteraceae RepID=Q07GB5_ROSDO 47 7e-04 UniRef50_Q63WD6 Putative replication protein n=1 Tax=Burkholderi... 46 0.001 UniRef50_Q19SU6 RepC n=40 Tax=root RepID=Q19SU6_ECOLX 46 0.001 UniRef50_A9H5J3 Putative replication protein A n=3 Tax=Gluconace... 46 0.002 UniRef50_C1D2L5 Putative Plasmid replication initiator protein n... 46 0.002 UniRef50_Q53W40 Putative uncharacterized protein TTHB126 n=3 Tax... 46 0.002 UniRef50_Q9RYE9 Putative uncharacterized protein n=1 Tax=Deinoco... 46 0.002 UniRef50_Q1N8B2 Possible replication protein A n=1 Tax=Sphingomo... 45 0.004 UniRef50_A9HQY5 Putative replication protein A n=1 Tax=Gluconace... 45 0.004 UniRef50_UPI00016C4D67 replication protein A n=1 Tax=Gemmata obs... 44 0.006 UniRef50_UPI0001BC648D chromosomal replication initiator protein... 44 0.008 UniRef50_Q2Y567 Plasmid replication initiator protein-like n=4 T... 40 0.079 >UniRef50_Q52219 RepFIB replication protein A n=58 Tax=Bacteria RepID=REP10_ECOLX Length = 325 Score = 419 bits (1078), Expect = e-116, Method: Composition-based stats. Identities = 324/325 (99%), Positives = 324/325 (99%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA Sbjct: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS Sbjct: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 Query: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL Sbjct: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 Query: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ Sbjct: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 TVRRAMEQLREIGYLDYTEIQRGRTK FCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE Sbjct: 241 TVRRAMEQLREIGYLDYTEIQRGRTKLFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 Query: 301 MAEKLALLEKLGITLDDLEKLFKSR 325 MAEKLALLEKLGITLDDLEKLFKSR Sbjct: 301 MAEKLALLEKLGITLDDLEKLFKSR 325 >UniRef50_Q46775 RepI n=11 Tax=Enterobacteriaceae RepID=Q46775_ECOLX Length = 301 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 280/301 (93%), Positives = 288/301 (95%) Query: 25 MRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTW 84 MRLGVFVPTLKSLKNSKKNTLSRTDATEE+TRLSLARAEGFDKVEITGPRLDMDNDF TW Sbjct: 1 MRLGVFVPTLKSLKNSKKNTLSRTDATEEVTRLSLARAEGFDKVEITGPRLDMDNDFNTW 60 Query: 85 VGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRT 144 VG+IHSFARH VIGDKVELPFVEFAKLCGIPSSQSSR+LRERISPSLKRIAGTVISFSRT Sbjct: 61 VGVIHSFARHKVIGDKVELPFVEFAKLCGIPSSQSSRKLRERISPSLKRIAGTVISFSRT 120 Query: 145 DEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 204 EKHT+EYITHLVQSAYYDTE+DIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ Sbjct: 121 TEKHTKEYITHLVQSAYYDTEKDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 180 Query: 205 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR 264 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR Sbjct: 181 ALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR 240 Query: 265 TKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLEKLFKS 324 TK FCIHYRRP+LK P+DES ENP P+ VSPEMAEKL LLEKLGITLDDLEKLFKS Sbjct: 241 TKLFCIHYRRPKLKPPHDESAENPQLPATTGDVSPEMAEKLKLLEKLGITLDDLEKLFKS 300 Query: 325 R 325 R Sbjct: 301 R 301 >UniRef50_Q934T6 Replication protein repA n=29 Tax=Enterobacteriaceae RepID=REPA_SALTI Length = 351 Score = 343 bits (879), Expect = 6e-93, Method: Composition-based stats. Identities = 191/299 (63%), Positives = 231/299 (77%), Gaps = 10/299 (3%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 DK +GE+VTL PN NNTVQPVALMRLG+FVPTLKS +K + DA+ EL +LSLA+ Sbjct: 19 DKKTGEVVTLVPNTNNTVQPVALMRLGLFVPTLKSTARGRKGQMVSMDASAELKQLSLAK 78 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 AEG++ + I+G RLDMDNDFKTWVGIIH+FA+H V+GD V LPFVEF +LCGIP+++SS Sbjct: 79 AEGYEDIRISGVRLDMDNDFKTWVGIIHAFAKHKVVGDTVTLPFVEFVRLCGIPTARSSA 138 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 +LR+R+ SL RIA ISF + Y+THLVQ+A Y T+ D V LQADP++FELY Sbjct: 139 KLRKRLDSSLTRIATNTISFR--SKGSDEYYVTHLVQTAKYSTKNDTVSLQADPKIFELY 196 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQT 241 QFD+KVLLQL+AIN L R+ESAQALYTFIESLP DPAPISLARLRARLNL S +QN T Sbjct: 197 QFDKKVLLQLRAINELSRKESAQALYTFIESLPPDPAPISLARLRARLNLTSRTITQNAT 256 Query: 242 VRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 VR+AMEQLREIGYLDYTE++RG + +F IHYRRP+L+ LPP+ A PE Sbjct: 257 VRKAMEQLREIGYLDYTEVKRGSSVYFIIHYRRPKLRP--------ALPPTKAAPEEPE 307 >UniRef50_C8QB82 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b RepID=C8QB82_9ENTR Length = 339 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 143/326 (43%), Positives = 204/326 (62%), Gaps = 7/326 (2%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVP-TLKSLKNSKKNTLSR-TDATEELTRLS 58 ++K +GE+V L P+ TVQPVALMRLG+FVP T + S NT+ DATE+L L Sbjct: 15 VNKKTGEVVHLNPSAAATVQPVALMRLGLFVPNTDHAKAKSSVNTVKSTVDATEDLYHLE 74 Query: 59 LARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQ 118 + + EG+ + I RLDM DF+ W+GII S + K++LPF +F + CG S + Sbjct: 75 VVKREGYKDISIRSERLDMATDFRVWLGIIRSIYDNGTFAGKLKLPFTKFLQNCGFDSKR 134 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLF 178 S++ +++RI SL R+ G I F T T LV SA+Y+ ++ V+++ D RL Sbjct: 135 SNKDMKKRIDDSLMRLRGVTIQFRND----TGSLTTGLVNSAHYNMAKNEVEIEGDHRLA 190 Query: 179 ELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQ 238 +LYQ D KV L+LKAI+ L R+ESAQALYTFIESLPR+PAP+S+ RLR RL LKS + Q Sbjct: 191 DLYQMDYKVYLRLKAIDHLPRKESAQALYTFIESLPRNPAPVSMKRLRERLRLKSRIAYQ 250 Query: 239 NQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVS 298 N VR+A+E+L+EI YL+YTE +RGR+ +F I R P L P+ K + + V Sbjct: 251 NHIVRKALEELKEINYLEYTETKRGRSVYFNITKRNPNL-IPDKSLKLDRSAEDEPQIVD 309 Query: 299 PEMAEKLALLEKLGITLDDLEKLFKS 324 M K++ L+ G + +++ K+ S Sbjct: 310 EAMIAKISKLKDSGFSEEEIAKILIS 335 >UniRef50_Q19N91 RepH12 n=8 Tax=Enterobacteriaceae RepID=Q19N91_ECOK1 Length = 362 Score = 313 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 150/300 (50%), Positives = 196/300 (65%), Gaps = 9/300 (3%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSR-TDATEELTRLSLA 60 +K SG+ + L PN+N TVQ +ALMRLG+FVP+ KS+ + + DAT+EL LSL Sbjct: 21 EKESGKDIILRPNSNRTVQSIALMRLGLFVPSPKSVGRQNREYKTVGFDATKELQTLSLM 80 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSS 120 +EGF + I G RL+M DFKTW+GII ++A H + D + L F EF KLC + +SS Sbjct: 81 ESEGFTNISIVGERLNMSVDFKTWMGIIRTYANHPINNDTISLKFTEFLKLCTPENYRSS 140 Query: 121 RRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFEL 180 R+RI SL+R+A +SF+ + ++ Y THLVQSA D E D V LQ DP++FEL Sbjct: 141 TASRKRIDASLRRLASVTLSFTSNNS--SKVYTTHLVQSALLDPESDQVVLQVDPKIFEL 198 Query: 181 YQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 YQ+D KVL+QLKAI L ++ESAQALYTFIESLP +P PISL RL+ RLNLK+ SQN Sbjct: 199 YQYDHKVLMQLKAIKELAKKESAQALYTFIESLPPNPIPISLTRLKNRLNLKTRANSQNA 258 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 TVR+A+E+L IGYL YTEI++ +F IH R P L N + PP + E Sbjct: 259 TVRKALEELASIGYLKYTEIKKDGKVYFQIHKRDPDLNLNNTQ------PPLEVVEDEEE 312 >UniRef50_Q19NT3 RepA n=9 Tax=root RepID=Q19NT3_ECOK1 Length = 291 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 118/274 (43%), Positives = 180/274 (65%), Gaps = 5/274 (1%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAE 63 SG+ LTPN++ +VQPVAL+RL VF P + +N +N DA++EL+ + +AR+E Sbjct: 17 ESGKTYQLTPNSSKSVQPVALLRLSVFTPV-GTKENRDRNFE--VDASDELSCMEIARSE 73 Query: 64 GFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRL 123 G+D ++ITG +L M DFK W+GII +F+++ +K+ F EFAK+CGI S+ ++R Sbjct: 74 GYDDIKITGVKLSMSTDFKCWLGIIMAFSKYGFTSEKITQTFNEFAKMCGISSTNINKRT 133 Query: 124 RERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQF 183 R R SL +A V++FS D + R +THLVQ A D + D V+L DP ++ELY++ Sbjct: 134 RARFKESLMNLASVVLAFS--DSRSGRFTVTHLVQKAMIDPKSDTVELVGDPSMWELYRY 191 Query: 184 DRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVR 243 D K LL L+ + L ++E+AQ+LY + E++P +++ RLR RL L +P+ +QNQ +R Sbjct: 192 DHKTLLSLQVLYILAKKEAAQSLYIYFEAMPAGTLFVNMKRLRERLLLTTPIRTQNQIIR 251 Query: 244 RAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRL 277 +AM +L IGYLDY E+++GR F I R P+L Sbjct: 252 KAMRELESIGYLDYQEVKKGRDIQFQIFKRSPKL 285 >UniRef50_A6TIP8 DNA replication n=2 Tax=Enterobacteriaceae RepID=A6TIP8_KLEP7 Length = 298 Score = 292 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 120/273 (43%), Positives = 168/273 (61%), Gaps = 4/273 (1%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAE 63 E L P+ N TVQPVALMRLG+F+P+LK +N DA+ EL L LARAE Sbjct: 16 EIDENKKLMPSRNATVQPVALMRLGLFLPSLKRKGKDTENI--SIDASSELQSLELARAE 73 Query: 64 GFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRL 123 G+ + ITGPRL M+ DFK WVGII +F+++ + +ELPF EFA CG S + L Sbjct: 74 GYTDIRITGPRLSMETDFKVWVGIILAFSKYGLNSSTIELPFSEFATFCGFSSKDKDKGL 133 Query: 124 RERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQF 183 R R++ SL R+ T I + ++ ++ L+ +D + DI++L AD L+ELYQF Sbjct: 134 RTRLADSLIRLRSTTIKLASEKDR--NGVVSGLLSRGKWDEKDDIMELTADESLWELYQF 191 Query: 184 DRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVR 243 DR+VLLQ+ I L + +AQALYTFIESLP P P+S AR++ RL L SP QN+ + Sbjct: 192 DRQVLLQMFIIRQLANKGTAQALYTFIESLPERPIPLSFARIKRRLMLTSPNNQQNRVIN 251 Query: 244 RAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPR 276 +A+++L+ +GYLD +++ I R PR Sbjct: 252 KAIDELKAVGYLDGDVVKKDGEWHLIITRRTPR 284 >UniRef50_P05833 Protein repA n=9 Tax=root RepID=REPA_ECOLX Length = 288 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 123/272 (45%), Positives = 178/272 (65%), Gaps = 5/272 (1%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEI 70 LT N NT+QPVA MRLG+FVP + + D +E + AR EGF ++I Sbjct: 22 LTVNELNTIQPVAFMRLGLFVP----KPSRSSDYSPMIDVSELSSTFEFARLEGFTDIKI 77 Query: 71 TGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPS 130 TG RLDMD DFK W+GI+ +F+++ + ++++L F EFAK CG P + ++LR I S Sbjct: 78 TGERLDMDTDFKVWIGIVKAFSKYGISSNRIKLKFSEFAKDCGFPGKKLDKKLRAHIDES 137 Query: 131 LKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQ 190 L++I G ISF R + + Y T L++ AY++ + D+V+L+AD RL+ELY FD +V+LQ Sbjct: 138 LRKIRGKSISFKRGKDSQS-AYHTGLIKIAYFNADTDVVELEADERLWELYYFDYRVVLQ 196 Query: 191 LKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLR 250 L AI AL R E AQALYTF+ SLP +PAPIS RLR RL+L S V QN+ +++A+ +L Sbjct: 197 LHAIKALPRLEVAQALYTFLASLPSNPAPISFERLRERLSLISQVKEQNRIIKKAITKLI 256 Query: 251 EIGYLDYTEIQRGRTKFFCIHYRRPRLKAPND 282 +IG LD + +++G+ + IH R P+L N+ Sbjct: 257 DIGNLDASMVKKGQENYLIIHKRSPKLSVINE 288 >UniRef50_C8UR54 Probable replication protein n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UR54_ECO1A Length = 294 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 129/278 (46%), Positives = 178/278 (64%), Gaps = 6/278 (2%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSL----KNSKKNTLSRTDATEELTRLSL 59 ++GE+ +L PNNN+T+QP+AL+RLGVFVPTLKS + T + T+ATEEL+ L + Sbjct: 17 NTGEIHSLKPNNNSTIQPIALLRLGVFVPTLKSTNVALRRGSSVTTNTTNATEELSSLKI 76 Query: 60 ARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKV-ELPFVEFAKLCGIPSSQ 118 EG++ +EI GPRLDMD DFK WVGI + + D + LPF EFA CG P + Sbjct: 77 VEQEGYEGIEIHGPRLDMDTDFKVWVGITSALFDYAPDDDGIITLPFSEFADRCGYPRKR 136 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEK-HTREYITHLVQSAYYDTERDIVQLQADPRL 177 S+ R+ I SL RI TV+ F K H +L+ + +TE D++++Q +L Sbjct: 137 LSKAFRKSIDDSLTRIQQTVVKFRFPAAKGHLNNINVNLLAYSSLNTELDVIEIQPQKQL 196 Query: 178 FELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFS 237 ELY D K +L+LK ++ L R+E+A+ LYTF E+LP +PAP+S+ RLRARLNLKS V Sbjct: 197 SELYYVDYKRILKLKMLDKLGRKETAKVLYTFFEALPANPAPVSIERLRARLNLKSSVSV 256 Query: 238 QNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRP 275 QN +R+AM+ L I YL ++EI+ GR F IH R P Sbjct: 257 QNSVIRKAMKDLEAIEYLKFSEIKNGRKIGFQIHKRNP 294 >UniRef50_C1ME85 RepA protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1ME85_9ENTR Length = 288 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 110/280 (39%), Positives = 165/280 (58%), Gaps = 12/280 (4%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 S+G+ LT N++VQPV+L+RLGVF P+ ++ N TE L+ L +A+ Sbjct: 18 QPSTGK---LTVTKNSSVQPVSLLRLGVFTPSCRTEATVTLN------VTEALSSLEIAK 68 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHN--VIGDKVELPFVEFAKLCGIPSSQS 119 EG+ ++ITGP L+ DF+ W I+HSF+ + G+++++PF EFAKLCG PS + Sbjct: 69 QEGYTDIKITGPMLNYFQDFRCWTAIVHSFSVSPDALKGNRIKMPFSEFAKLCGYPSKRY 128 Query: 120 SRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFE 179 S +LR I+ SL +I I F + + T+ + L++ A +D E D + L+AD RL++ Sbjct: 129 STKLRNEIADSLTKIRSKSIRFEK-NPGITKFKVAGLLKEAEFDGESDYIILEADERLWD 187 Query: 180 LYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQN 239 LY+ D LL+ K + L R E+AQALYTF E+LP+ PAPI+ RLR RL L + QN Sbjct: 188 LYRSDHLTLLRKKPLELLTRNETAQALYTFFEALPQHPAPITFDRLRQRLLLNGRIAEQN 247 Query: 240 QTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 + +R A++ L IGYL + + I R P+L Sbjct: 248 RKMRTALDVLASIGYLKFYYLVDTSVPTIQITDRNPKLTG 287 >UniRef50_Q08088 Replication protein n=7 Tax=Enterobacteriaceae RepID=Q08088_ECOLX Length = 293 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 114/277 (41%), Positives = 165/277 (59%), Gaps = 4/277 (1%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARA 62 K SGE++ L P T+QP L+RLGVFVPTLKS + + DATE L+RLS+ Sbjct: 17 KDSGEVIQLFPTLKQTIQPKVLLRLGVFVPTLKSTDKGGRKS-HHIDATEPLSRLSIVEG 75 Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGD-KVELPFVEFAKLCGIPSSQSSR 121 EG+ +++I GPRLDMD DFK+W GI+++ + + + ++EL F EFAK CG + + + Sbjct: 76 EGYSQIQIYGPRLDMDTDFKSWCGIVYALSNRPLDSEGQLELNFPEFAKFCGFDTKRIDK 135 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYI--THLVQSAYYDTERDIVQLQADPRLFE 179 +L+ER SL RIA T ISF + + HLV+S YYD+ + ++ + +L Sbjct: 136 QLKERFDASLTRIARTNISFIKKIPGTDDQITINMHLVESTYYDSSTGKIIIKPNSKLNT 195 Query: 180 LYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQN 239 LY+ D K L LK + L R+ESAQALY ++ LP I RLR RL L S + +QN Sbjct: 196 LYRVDGKTRLYLKTLQKLARKESAQALYLYLAELPSTFYRIGFDRLRGRLQLSSHLGNQN 255 Query: 240 QTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPR 276 TV++A+ QL+EIG+L+Y+ + I R + Sbjct: 256 ATVKKALGQLKEIGFLEYSIDKENGDYVLNILKRNMK 292 >UniRef50_B4ABW5 Replication protein RepA n=1 Tax=Salmonella enterica subsp. enterica serovar Newport str. SL317 RepID=B4ABW5_SALNE Length = 295 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 133/282 (47%), Positives = 180/282 (63%), Gaps = 5/282 (1%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLA 60 + KS+GE +TL + ++VQ V LMRLGVFVPTLKS +K+ T + +A+++L +LS+ Sbjct: 15 VQKSTGEEITLVSTSESSVQVVPLMRLGVFVPTLKSTDKAKE-TRTVVNASKDLNQLSIY 73 Query: 61 RAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNV---IGDKVELPFVEFAKLCGIPSS 117 RAEGFD V I GPRLDMD DFKTW+GII K+ LPF EFAK CG P + Sbjct: 74 RAEGFDNVVIKGPRLDMDTDFKTWIGIISVLTDRAFPMGSDGKITLPFSEFAKRCGFPRA 133 Query: 118 QSSRRLRERISPSLKRIAGTVISFSRTDEKHT-REYITHLVQSAYYDTERDIVQLQADPR 176 + LR+++ S+ I TV+ FSR K T + + L+ + D +DIV L Sbjct: 134 RMKAELRQKLKDSIVNIMSTVVEFSRDAGKPTEKTHFVQLMGESTIDIAKDIVVLTPSMS 193 Query: 177 LFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVF 236 L +LY + +VLL+LKA+ L R+ESAQALY ++E+LP DP P+ + RLR RLNL S Sbjct: 194 LRDLYASEYRVLLKLKALKELARKESAQALYLYLEALPADPFPVKMERLRERLNLTSRPA 253 Query: 237 SQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLK 278 QNQ +R+AM+QL +IGYL Y E++ GR F I R P+LK Sbjct: 254 LQNQVIRKAMKQLEDIGYLKYQELKNGRDIAFKIIERNPKLK 295 >UniRef50_B5RKG1 Initiator replication protein RepB n=1 Tax=Klebsiella pneumoniae 342 RepID=B5RKG1_KLEP3 Length = 299 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 122/287 (42%), Positives = 177/287 (61%), Gaps = 11/287 (3%) Query: 1 MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKN---SKKNTLSRTDATEELTRL 57 +++++GE++TL+ + +VQ V LMRLGVFVPTLKS K N S +A+++L L Sbjct: 15 INQTTGEVITLSSTSETSVQTVPLMRLGVFVPTLKSTNKAIAKKSNVGSNINASDDLRHL 74 Query: 58 SLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGD---KVELPFVEFAKLCGI 114 LA++EGF+++ I+GPRLDMD DFK W GII + + + + + F EFA CG Sbjct: 75 ELAKSEGFERITISGPRLDMDTDFKVWTGIISVLTDNELESNEDGTISIRFTEFAMRCGF 134 Query: 115 PSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQ---SAYYDTERDIVQL 171 + RE+I SL+++ V+ FS+ ++ T +T VQ + D D V L Sbjct: 135 SRGRLKAEFREKIKDSLRKLMSNVVEFSK--DRGTNIEVTKFVQLIGESTVDIGNDKVIL 192 Query: 172 QADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNL 231 L +LY + K+LL+L+A+ AL R+ESAQALYTFIE+LP +P P+S+ R R RL+L Sbjct: 193 TPSKTLKDLYVGEYKILLKLRALKALARKESAQALYTFIEALPPNPIPVSIERFRKRLSL 252 Query: 232 KSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLK 278 S QN TVR+A++QL +IGYL+Y E++ G F I R P LK Sbjct: 253 TSRPALQNSTVRKALKQLEDIGYLEYQELKEGNKIAFQIIKRNPSLK 299 >UniRef50_Q8E8A8 Plasmid replication protein RepA n=2 Tax=Shewanella RepID=Q8E8A8_SHEON Length = 293 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 99/278 (35%), Positives = 160/278 (57%), Gaps = 7/278 (2%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 + +SG+L LT ++ +VQP L+R GVF P + + N + D + +L L + + Sbjct: 16 NLNSGKL--LTISSTTSVQPNVLLRTGVFTPVG---RRTNANDVKAQDLSNDLVNLDVCQ 70 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 EG+D V + G RL+++ DFK W GI+ F+++ + V+L F EFAK C PS + + Sbjct: 71 KEGYDLVTVRGQRLNIETDFKVWCGIVLVFSKYGYSSNTVKLTFSEFAKFCSYPSRRFDK 130 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 LR++I SL RI +SF R + + + T ++ A YD E DIV+L AD L++LY Sbjct: 131 NLRKQIGDSLGRIQSQSLSFRRKNSE--KAVHTGMLLRAMYDGEEDIVELMADETLWDLY 188 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQT 241 + D +VL+ L+ + L R E AQ LY + SLP +P P+S RLR RL L++ N+ Sbjct: 189 RLDYQVLVSLRVLEKLPRAEVAQCLYLYFTSLPENPHPVSFERLRERLRLETSKKEANRK 248 Query: 242 VRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 ++ +++L IGYL + + +++ I R +L+A Sbjct: 249 IKTGIQKLESIGYLSGSFAVKNGEQYYLIDQRYKKLEA 286 >UniRef50_C9Y5R6 RepFIB replication protein A n=3 Tax=Enterobacteriaceae RepID=C9Y5R6_CROTZ Length = 230 Score = 223 bits (567), Expect = 9e-57, Method: Composition-based stats. Identities = 96/202 (47%), Positives = 133/202 (65%), Gaps = 5/202 (2%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 K SGE LTPN+N TVQPVAL+RL VF P + K++ L DA+EEL+ L +AR Sbjct: 15 KKESGESYELTPNSNKTVQPVALLRLSVFTPVSP-KEKGKRDFL--IDASEELSSLEVAR 71 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 EG+ ++I G +L M DFKTW+GII +F+++ DK+ LPF EFA++CG+ + + Sbjct: 72 QEGYTNIKIQGAKLGMSTDFKTWIGIISAFSKYGYTSDKICLPFSEFARMCGLRPTDING 131 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 R R R+S SL ++ +SF D K R +THLVQ A D E + V++ DP L+ELY Sbjct: 132 RARNRLSESLFNLSSVTLSFRSQDGK--RSLVTHLVQRAQLDMETNEVEIVGDPSLWELY 189 Query: 182 QFDRKVLLQLKAINALKRRESA 203 ++D KVLL LKA++AL R+ESA Sbjct: 190 RYDHKVLLGLKALSALSRKESA 211 >UniRef50_C5ANI6 TrfA family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5ANI6_BURGB Length = 287 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 106/272 (38%), Gaps = 35/272 (12%) Query: 20 QPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDN 79 P L R +F + K+ + R +A EG++ + TG L D Sbjct: 38 LPNPLARCALFTASGKTEPR------------IDFKRSVIASLEGYE-IAYTGEELRQD- 83 Query: 80 DFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVI 139 D ++ ++H AR +G ++++ G + + ER+ S+ R+ + Sbjct: 84 DQDVFLQLVHV-ARQEDLGTQLQVTVHSILVALGWGRA---KDAYERLHKSVARLREGTV 139 Query: 140 SFSRTDE-----------KHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVL 188 + + ++ + +L++ D E D L D R+ L+ D Sbjct: 140 WVTFSAGGAVAESDDAKVSLSKGFTGNLIK--ALDWEGDKWMLSLDQRMIALFGSDGYTA 197 Query: 189 LQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKS-PVFSQNQTVRRAME 247 + + AL A+ L++F + R+P P ++ +L K+ + ++++A++ Sbjct: 198 INWEERLALG--PLAKWLHSFYFTH-REPLPYTVRKLYELCGSKAKQLKHFRASLKKALD 254 Query: 248 QLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 +L +G+L + K F P L A Sbjct: 255 ELVAVGFLVEWSLDPKSDKIFVKRRHTPALTA 286 >UniRef50_Q3SEY9 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SEY9_THIDA Length = 325 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 98/257 (38%), Gaps = 28/257 (10%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +R +F ++ K+ + R E+L L G ++ TG RLD D Sbjct: 53 PNVALRSALF----GAIAKGKRRYVER----EQLAAL------GDIQILYTGQRLDQ-GD 97 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 + ++H+ ARH +G++ + KL G S + R + L R+ + Sbjct: 98 LDAYQSVLHA-ARHQAMGEQCRVTSYALLKLMG---KTDSGKNRATLHNRLTRLRANAVE 153 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRR 200 YI L+ A+ + + P+L L+ D ++ +AL + Sbjct: 154 IKHG----RYNYIGGLINEAFRCEKTQEWVIVLTPKLRVLFAADEFTHIEWAVRHALDGQ 209 Query: 201 ESAQALYTFIESLPRDPAPISLARLRARLNLKSP-VFSQNQTVRRAMEQLREIGYLD--- 256 AQ L+ F S + P P+ + L ++ ++ QT+R+A+ + E + Sbjct: 210 PLAQWLHGFYASHAK-PYPMKIETLHRLCGSETADLWKFAQTLRKALNAVTEASAVHGER 268 Query: 257 YTEIQRGRTKFFCIHYR 273 + RG + Sbjct: 269 FNYTVRGDVVHIEKIAK 285 >UniRef50_B9TFM5 TrfA transcriptional repressor protein, putative n=1 Tax=Ricinus communis RepID=B9TFM5_RICCO Length = 299 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 24/249 (9%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P ++R +F +N R EE+ + EG ++ TG L ND Sbjct: 57 PNEILRSALF-------NAKNRNEARRFFKNEEIGVI----GEGV-RITYTGEELRQ-ND 103 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ +IH A+ G VE + S+ + + ER+ SL+R+ T +S Sbjct: 104 ESVWLQLIH-LAKAAPAGRPVEFTAYSMVQALRTAKSKPNPKHIERLCESLRRMQATSLS 162 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERD-----IVQLQADPRLFELYQFDRKVLLQLKAIN 195 + R ++ + E ++Q P L EL+ LQ + Sbjct: 163 V--YSPRLGRGISLSMIPRFEWQDEASGTRLPKWRVQIAPELVELFGDMHYTHLQWRQRL 220 Query: 196 ALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSP-VFSQNQTVRRAMEQLREIGY 254 L A L+ + S R P P+ L L+ + Q + A+ +L+ +G+ Sbjct: 221 DLP-SGLATWLHGYFASH-RKPMPVKLTTLKKGAGCTTETPRKFKQLIVAALTELQRVGF 278 Query: 255 LDYTEIQRG 263 L ++ Sbjct: 279 LKRWDVDDN 287 >UniRef50_C4UAU7 Plasmid-related transcriptional repressor protein n=2 Tax=Yersinia RepID=C4UAU7_YERAL Length = 288 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 105/275 (38%), Gaps = 28/275 (10%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARA 62 + GE + PN+ + R +F P NSK N + T ++R+ Sbjct: 39 PNIGESYRIMPNH--------IARSSLFAPV-----NSKNNLVYA--GTTLVSRVDAV-- 81 Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRR 122 ++ G +LD ++ W+ ++ ++H+ +G+ + + +F + G + S Sbjct: 82 -----IKFWGEQLD-ESQADVWMQAMYEASKHS-LGEPIVISRSKFLRAIGRNT---SGA 131 Query: 123 LRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQ 182 E + S+ + + S + H++ YD E Q DPR +Y Sbjct: 132 NYEWLHRSMLCLEQAMFSIETNRFATGSQSPLHMIDKFEYDNEIKSHIFQIDPRWIRMYY 191 Query: 183 FDRKVLLQLKAI-NALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQT 241 + L+ + ++ A+AL I + SL L+++L + + Sbjct: 192 NNEFSLINWSQRLSFFHNQDIAKALQRLILTSNEQQQKHSLEWLKSKLIYTGRLRDFKNS 251 Query: 242 VRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPR 276 + RA +L+ +G + I+ G + R + Sbjct: 252 IERAGAELKRVGIISDFCIEAGSKGKLQVSMTRLK 286 >UniRef50_A0B4V8 TrfA family protein n=4 Tax=Burkholderia RepID=A0B4V8_BURCH Length = 285 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 26/256 (10%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P AL R +F N K+ R+ + L +A +G + + +G L D D Sbjct: 41 PNALARSALF--------NVNKSNAPRSRMEKAL----IASVDGVE-ISFSGEELRQD-D 86 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 ++ ++H AR + +KVE K G + S + +R+ +L+R+ + Sbjct: 87 ADVFLEVLH-LARDTQLNEKVEFTGYSVLKSLGWGT---SVKCYDRLVTTLERLQAGQVK 142 Query: 141 FSRTDEKHT--REYITHLVQSAYYDTERD---IVQLQADPRLFELYQFDRKVLLQLKAIN 195 T K I + +T D +P + L+ D L + Sbjct: 143 VRFTGNKKGFVGSLIRKFLWKEGTETGTDGKTRWVAYVEPEIVALFSDDDYTRLAREQRQ 202 Query: 196 ALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKS-PVFSQNQTVRRAMEQLREIGY 254 L R E ++ L+T+ + P S+ L + ++ +F +++A+++L + G+ Sbjct: 203 RL-RYELSKWLHTYYHTHA-VPFAHSVRFLHRQCGSQTKELFHFRANLKKALDELVKEGF 260 Query: 255 LDYTEIQRGRTKFFCI 270 L I + Sbjct: 261 LVSWTIDKSDLVHVVR 276 >UniRef50_A1VQ75 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=A1VQ75_POLNA Length = 293 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 29/235 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +++R +F ++ ++ R+ A EG K+ TGP+LD D Sbjct: 48 PNSVLRSALF----GVVRRGPRSFQ---------QRVQKASVEGI-KIIHTGPQLDQ-AD 92 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W + AR +G +++ +F K G + +S E + + R+A +V+ Sbjct: 93 LDVWEQAL-QLARTGGLGCRIQFTASQFLKSIGRGNGKSQ---HEWLKGAFARLAASVVE 148 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRR 200 R Y ++ D + ++ +P++ ELY D ++ ALK+R Sbjct: 149 IKDAH----RAYFGAILHHGGRDDKTGRYVIEMNPKIIELYGLDGWSSVEFDQRMALKKR 204 Query: 201 ESAQALYTFIESLPRDPAPI---SLARLRARLNLKSPVFSQNQTVRRAMEQLREI 252 AQ L+ + S + P P+ +L RL N F Q+ ++ A+E+L E+ Sbjct: 205 PLAQWLHGYYSSHAK-PFPVKVETLHRLCGSQNAAIKGFKQD--LKSALEKLEEV 256 >UniRef50_D1EBW3 TrfA family protein n=1 Tax=Neisseria gonorrhoeae SK-92-679 RepID=D1EBW3_NEIGO Length = 292 Score = 179 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 85/253 (33%), Gaps = 25/253 (9%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P R +F + + +E++ ++ TG L +D Sbjct: 57 PNDFARSCLFTARNHRVPRKTFSREKLFHISEKV------------EILYTGTELRSVDD 104 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ ++ + R +G+ VE + K G + S +R+ SL R+ T I Sbjct: 105 ELIWMQLVD-YCRRFPLGNYVEFDIRQLIKDIGWDT---SGAYYKRVRESLSRMKATEIY 160 Query: 141 FSRTDE---KHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINAL 197 + I + V E ++ D +L L+ + + L Sbjct: 161 IKNGNTYGVSGGISLIDNYVGIENIKGEPTRYKVSIDKKLIVLFAGNTFSNIPWSQYKKL 220 Query: 198 KRRESAQAL--YTFIESLPRDPAPI-SLARLRARLNLKSPVFSQNQTVRRAMEQLREIGY 254 A+ L Y F P +P PI + + + SP +QNQ ++ +L E Sbjct: 221 S--PMARRLTDYVFSHKHP-NPIPIPAFLAMCGSDQINSPAKTQNQNAKKICAELTEAQL 277 Query: 255 LDYTEIQRGRTKF 267 + + G+ Sbjct: 278 VKTAFVLSGKIIV 290 >UniRef50_B3E1G9 TrfA family protein n=3 Tax=Desulfuromonadales RepID=B3E1G9_GEOLS Length = 279 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 22/251 (8%) Query: 15 NNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPR 74 + P ++R +F +N E+ + G +V G Sbjct: 41 DTQRAMPNEILRSALF-------NCRNRNQARLFMKDAEIAVI------GDGQVIYRGEE 87 Query: 75 LDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRI 134 L D D W+ ++H A+ +GD ++ F K+ G P + +R+ L R+ Sbjct: 88 LRQD-DELVWLHLMH-LAKKTRLGDCIDFTPYSFIKMLGWP---IKGQSYDRLRVCLSRM 142 Query: 135 AGTVISF--SRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLK 192 T I F R D + I + ++ + L+ + + + Sbjct: 143 QATAIRFQSKRLDSFISVSLILKFRSRNDNNETLSRWEVWVGEEMRLLFDEEFLTRVNWE 202 Query: 193 AINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREI 252 AL A L+ + S R P P+ L + + +R+A++ L ++ Sbjct: 203 TRRALP-DGIASKLFGYWSSH-RKPFPVKTETLIKLCGSEMELRHFRIELRKALDVLVKV 260 Query: 253 GYLDYTEIQRG 263 +L+ E + Sbjct: 261 SFLESWEFRED 271 >UniRef50_Q120X5 TrfA n=2 Tax=Polaromonas RepID=Q120X5_POLSJ Length = 340 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 30/265 (11%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P L+R G+F + +D E + + +A ++ + TG L + D Sbjct: 94 PNPLVRSGLFT-------------VGNSDKREYVPDMVIASLSNYE-IRYTGSELRQE-D 138 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ +I+ AR I + + + K G + +R+ ++R+ T + Sbjct: 139 LSVWMSLIN-LARKKPISEAIYFTGYQVVKDLGW---RMHSESYKRVQDCIERLKVTGLK 194 Query: 141 FSRTDEKHTREYITHLVQSAYY----DTERDIVQLQADPRLFELYQFDRKVLLQLKAINA 196 T H Y L++ + + ++ +PR+ L+ D LL+ + Sbjct: 195 I--TTRGHESAYSGSLIRDYGWTERDEAGNQKWMVRFEPRISALFMEDTTTLLEWEMRKK 252 Query: 197 L-KRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYL 255 + R A L +F + RDP P SL ++ K + S + VR A+ +L E +L Sbjct: 253 IGPRSTLALWLLSFYSTH-RDPEPNSLGKIYELCRSKDTLSSFRRNVRNALAKLVEKQFL 311 Query: 256 DYTEIQRG--RTKFFCIHYR-RPRL 277 + + + R PRL Sbjct: 312 KSFNMDNDILQVEKLKADKRITPRL 336 >UniRef50_C7RW93 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RW93_9PROT Length = 277 Score = 178 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 25/241 (10%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P + +R +F +++ + L +LA +G V+ TG +L+ + D Sbjct: 42 PNSFIRSALFAA----IQSKDRVF---------LKEATLASQKGIA-VKFTGEQLNQE-D 86 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W + H AR + +G E K G + Q+ +++ ++ R+ + Sbjct: 87 LSVWETLAH-LARQHPLGCMCEFTAHGLLKSLGQHTGQTQ---HKQLHSTIIRLTACAVE 142 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRR 200 + + Y LV+S D +++ + L L+ ++ L + L+ + Sbjct: 143 ITHE----GKTYFGQLVKSGLKDELTSHYRIELNRELIRLFGENQWTALDWQQRQRLRGK 198 Query: 201 ESAQALYTFIESLPRDPAPISLARLRARLNL-KSPVFSQNQTVRRAMEQLREIGYLDYTE 259 AQAL+ F S R P PI L LR + +R A+++L IG+L + Sbjct: 199 LLAQALHAFYSSH-RQPFPIKLDTLRGYVGSRNVQRAGFKVKLRIALDELVTIGFLTSYD 257 Query: 260 I 260 I Sbjct: 258 I 258 >UniRef50_Q21QG5 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QG5_RHOFD Length = 325 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 97/260 (37%), Gaps = 30/260 (11%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +R G+F KS++ EE+ +A F V TG L D D Sbjct: 83 PNGFLRSGLFTARSKSVR-------------EEIKGTRIASLSNF-DVHYTGCELRQD-D 127 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ ++ + AR IGDK+ K G + R+ ++R+ T + Sbjct: 128 LSAWIALM-TRARLQPIGDKIYFVAYSLVKDLGWS---LNSASYARLKSCIERLKLTSLK 183 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDI----VQLQADPRLFELYQFDRKVLLQLKAINA 196 D+K Y+ LV+ YD D ++ +P + +L+ + L+ + Sbjct: 184 IGSKDQK--SAYVGSLVRDFAYDELDDKGNVSWMIRVEPGIAKLFVDENTTFLEWEERKR 241 Query: 197 L-KRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRR--AMEQLREIG 253 L R AQ L+ + S P PIS+ +LR L N +R A+E L E G Sbjct: 242 LGTRNSLAQWLHGYYSSH-TIPIPISIGKLRE-LCESGQKSLPNFKIRTRQALELLVENG 299 Query: 254 YLDYTEIQRGRTKFFCIHYR 273 L I R Sbjct: 300 CLLRYSITNDLVYVTKSPRR 319 >UniRef50_Q21QH1 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QH1_RHOFD Length = 268 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 89/259 (34%), Gaps = 28/259 (10%) Query: 54 LTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIH-SFARHNVIGDKVELPFV--EFAK 110 +L+ E +V G L D D W+ ++H + R D+VE+ F F Sbjct: 17 YGKLTPVYCEANLEVYFKGEELREDTDKLVWLQLMHMARGRTFNEEDQVEVTFTANRFLN 76 Query: 111 LCGIPSSQSSRRLRERISPSLKRIAGTVISF-SRTDEKHT---------REYITHLVQSA 160 G + S +R+S +L R+ I + + + T + H+ A Sbjct: 77 DLGWDN---SGACYKRLSDALDRLQNAQIKVMGKRNGRKTGWITMSYVSNVAVGHIAGKA 133 Query: 161 YYDTERD-IVQLQADPRLFELYQ---FDRKVLLQLKAINALKRRESAQALYTFIESLPRD 216 + ++ D +YQ + K Q K + + R+ L + P D Sbjct: 134 MNKVGPNTRWTVRMDHFAAHMYQAGMIEIKSDQQYKELRTMSRKILDMVL-----ASPTD 188 Query: 217 PAPISLARLRARLNLK-SPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRP 275 I L L + + S Q ++ A+E+LR GY+ + P Sbjct: 189 LISIHRDDFIKFLGLNPTNIRSAKQNIKVALEELRSPGYIHHFAFDAANVLHINRTAEAP 248 Query: 276 --RLKAPNDESKENPLPPS 292 R PN + P + Sbjct: 249 INRGTPPNIRIHKAPEMEN 267 >UniRef50_Q1H9T9 Trans-acting replication factor A n=1 Tax=Plasmid QKH54 RepID=Q1H9T9_9ZZZZ Length = 373 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 80/244 (32%), Gaps = 25/244 (10%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P + R +F K + L + ++ +G L ++D Sbjct: 141 PNDIARTALFTVRNKRKPR------------DALQSQPIYSYNQDVQITFSGIELRAEDD 188 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W ++ +++ IG + F E P + + ++ SL R+ + + Sbjct: 189 ELVWQQVL-EYSKRFPIGSPITFTFYELCSDLAWP---INGKYYKKAEDSLTRLQTSALQ 244 Query: 141 FSRTDEKHTREYITHLVQSAYYDT---ERDIVQLQADPRLFELYQFDRKVLLQLKAINAL 197 F + L++ Q++ + + L+ D + L Sbjct: 245 F--QSRRLGNMVSLSLLRRFGVLDRGKRTSRCQVELEDEMVYLFAGDHYSKFVWEKYREL 302 Query: 198 KRRESAQALYTFIESLPRDPAPISLARLRARLNL-KSPVFSQNQTVRRAMEQLREIGYLD 256 + + L+ + S + P P++L + + + + + A ++L++ G + Sbjct: 303 T--PTTRRLFDYCASH-KQPYPLALEKFQKMCGSDTARAAKWKEQSKAACDELKKSGLVA 359 Query: 257 YTEI 260 + Sbjct: 360 DAYV 363 >UniRef50_C7RVT2 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RVT2_9PROT Length = 303 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 94/265 (35%), Gaps = 31/265 (11%) Query: 20 QPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDN 79 P + R +F +S++ E R +A G ++ TG L D Sbjct: 47 LPNSFARSALFTSANRSVER------------ENFKRRKIATLRG-AEIFYTGEELRQD- 92 Query: 80 DFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVI 139 D ++ I+H AR +GD VE K + S+ ER+ S+ R++ T + Sbjct: 93 DGDVFLQIVH-LARQQPLGDVVEFSGYALLKDLEWTT---SKGSYERLRDSINRLSSTTV 148 Query: 140 SFSRTDEKH--TREYITHLVQSAYYDTERDI-----VQLQADPRLFELYQFDRKVLLQLK 192 + + LV+ ++ + + ++ +P + L+ D + Sbjct: 149 LVKTDGSAGHPEKGFGGSLVRKFEWNADAERGTSQCWRIWLEPEIVVLFGRDTYTRIDWA 208 Query: 193 AINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLK-SPVFSQNQTVRRAMEQLRE 251 L A+ L+ F + P + ++ + + +R A+ L E Sbjct: 209 QRLQLP--PLAKWLHQFYFTH-EKPIGYKVETIKTLCGSRIGVLAKFRYKLREALALLVE 265 Query: 252 IGYLDYTEIQRGRTKFFCIHYRRPR 276 +G++ +I + R PR Sbjct: 266 VGFIVSYDIDSRTDILNVV--RAPR 288 >UniRef50_P07676 TrfA transcriptional repressor protein n=92 Tax=root RepID=TRFA_ECOLX Length = 382 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 82/245 (33%), Gaps = 21/245 (8%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P R +F K + E L + K+ TG L D+D Sbjct: 151 PNDTARSALFTTRNKKIPR------------EALQNKVIFHVNKDVKITYTGVELRADDD 198 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W ++ +A+ IG+ + F E + G + R + L R+ T + Sbjct: 199 ELVWQQVL-EYAKRTPIGEPITFTFYELCQDLGWS---INGRYYTKAEECLSRLQATAMG 254 Query: 141 FSRTDEKHTREYI-THLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKR 199 F+ H H + + Q+ D + L+ D + L Sbjct: 255 FTSDRVGHLESVSLLHRFRVLDRGKKTSRCQVLIDEEIVVLFAGDHYTKFIWEKYRKLS- 313 Query: 200 RESAQALYTFIESLPRDPAPISLARLRARLNL-KSPVFSQNQTVRRAMEQLREIGYLDYT 258 +A+ ++ + S R+P P+ L R + V + V A E+LR G +++ Sbjct: 314 -PTARRMFDYFSSH-REPYPLKLETFRLMCGSDSTRVKKWREQVGEACEELRGSGLVEHA 371 Query: 259 EIQRG 263 + Sbjct: 372 WVNDD 376 >UniRef50_A4G755 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G755_HERAR Length = 371 Score = 160 bits (405), Expect = 5e-38, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 93/272 (34%), Gaps = 42/272 (15%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVF-----VPTLKSLKNSKKNTLSRTDATEELTRL 57 + E T ++ V P AL+R +F VPTL S +L + T Sbjct: 82 RRGAETYLPTLSDVAQVLPNALLRCALFSSSRKVPTLNDQVLSGDTSLLVVNKTIASFNN 141 Query: 58 SLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDK----VELPFVEFAKLCG 113 G++ + D + + + + + V F EFAK G Sbjct: 142 VTVTLNGYELCQF---------DRIVYATCLDYYRERPLSPETENKHVGTTFYEFAKRMG 192 Query: 114 IPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTE-------- 165 S RL I SL R++ + R + + ++ D+E Sbjct: 193 RS---YSVRLHRSIRASLLRLSFAQLRIRRDR---LNLEVPKFLSVSFEDSEQGDGASAI 246 Query: 166 ------RDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAP 219 D + L+ + EL+ L+ KA++ L +F + + P Sbjct: 247 AGAPLGSDRLWLRVSESVAELFGPGAWTALERKAMDY---SGLQGWLASFYATH-QGPLW 302 Query: 220 ISLARLRARLNLKSPVFSQNQTVRRAMEQLRE 251 +S+ +L +S + + + A+++L+ Sbjct: 303 LSVKKLHEMSGYESRFSNFRKGLCDALDKLKA 334 >UniRef50_Q3JEY8 TrfA-related protein n=2 Tax=Nitrosococcus oceani RepID=Q3JEY8_NITOC Length = 278 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 94/265 (35%), Gaps = 26/265 (9%) Query: 2 DKSSGELVTLTP--NNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSL 59 + + +++ L P P ++R +F K + L + + Sbjct: 26 EAETAKIIPLLPCWGKGQRGVPNEMVRSALFSVKNKKQARA------------YLEGVPI 73 Query: 60 ARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQS 119 G ++ G L D D W+ I+H A+ +G VE K G Sbjct: 74 VVV-GDGRISYRGQELRQD-DEDIWLQIMHE-AKARPLGKCVEFKPYALLKGVGWA---I 127 Query: 120 SRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFE 179 + +R+ SL+R+ T ++ S + + L+Q D R ++ + Sbjct: 128 KGQSYQRLQISLERMVATALTVS--SHRLGKSVTLPLIQKFERDHGRGPWKVWISSEMVV 185 Query: 180 LYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARL-RARLNLKSPVFSQ 238 L+ L+ + L A+ L+ S R P P+ + L + + + + Sbjct: 186 LFGDVHYTRLEWAMRHQLG--PIAKWLHGLYSSHAR-PYPMKVETLWKGSGSADGLLKTF 242 Query: 239 NQTVRRAMEQLREIGYLDYTEIQRG 263 ++ A+ +L+ + +L I+ Sbjct: 243 KVNLKGALNELKAVDFLSDWRIEGN 267 >UniRef50_Q8RNX4 Replication protein RepA1 n=1 Tax=Serratia sp. 2-68 RepID=Q8RNX4_9ENTR Length = 208 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 69/136 (50%), Positives = 93/136 (68%), Gaps = 2/136 (1%) Query: 10 TLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVE 69 LTPN+N+TVQPVALMRLG+FVP+LK + K DA+EEL++L +A+AEG+ + Sbjct: 21 KLTPNSNSTVQPVALMRLGLFVPSLK--RKGKNVESVTIDASEELSKLEIAQAEGYSNIT 78 Query: 70 ITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISP 129 I+GPRL M+ DFK WV +I SF+++ + +ELPF EFA G P + +R LRERIS Sbjct: 79 ISGPRLSMETDFKVWVAVILSFSKYGRDTNTIELPFSEFASFAGYPDKEKTRVLRERISG 138 Query: 130 SLKRIAGTVISFSRTD 145 SL RI T +S S + Sbjct: 139 SLTRIRSTTLSLSSKN 154 >UniRef50_A1VX05 TrfA family protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VX05_POLNA Length = 345 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 86/250 (34%), Gaps = 28/250 (11%) Query: 20 QPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDN 79 P ++R +F + S + + G ++ G L D Sbjct: 104 LPNEILRSALFNARNRKNPRS-------------MMKSEPVAVIGDGRISYRGEELRQD- 149 Query: 80 DFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVI 139 D W+ ++H AR +V G VE F K + + R+ L+R+ T + Sbjct: 150 DETVWLQLVH-LARRHVAGQLVEFTAYSFCKDIDWS---INSKSYLRLKECLRRMQATSL 205 Query: 140 SFSRTDEKHTREYITHLVQSAYYDTE-----RDIVQLQADPRLFELYQFDRKVLLQLKAI 194 ++ R ++ Y+ +++ P L EL+ + L+ Sbjct: 206 DV--YSKRLERGVSLSMIPFFEYEDSETQKTLQRWRVRIAPELVELFGDNYFTRLEWAQR 263 Query: 195 NALKRRESAQALYTFIESLPRDPAPISLARLRARLNLK-SPVFSQNQTVRRAMEQLREIG 253 L A L+ ++ + R P PI + + L + + V+RA+ L G Sbjct: 264 LQLP-DGLATWLHGYLATH-RVPHPIKIETIAFGAGLTETSKPELRRLVKRALTNLVNCG 321 Query: 254 YLDYTEIQRG 263 +L ++ Sbjct: 322 FLTEFDVNED 331 >UniRef50_B1J370 Putative uncharacterized protein n=1 Tax=Pseudomonas putida W619 RepID=B1J370_PSEPW Length = 288 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 28/280 (10%) Query: 30 FVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIH 89 FV KS + + + + ++ +A+ + +E T L + NDF ++ I+ Sbjct: 18 FVKVPKSFLVTP--FFNSVRSGDSYNKVKIAKYFQYKDLEFTSESLSIFNDFDVFLFIVT 75 Query: 90 SFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHT 149 + + +E F + A GI + +R ++ ++ ++F + + Sbjct: 76 ETVKQK--SNVIEFWFDDLADFLGIEPNHKDTYF-KRYCETISKLEQIHVAFFLDNVR-- 130 Query: 150 REYITHLVQSAYYDTERDIVQLQADP-------RLFELYQFDRKVLLQLKAINALKRRES 202 Y ++ + + ++L+ D + ELY RK + LK+ Sbjct: 131 --YSLRFLELSPAQDKSKKLRLKVDQNYLNFFDSVNELYGVQRKTIKSLKSDYQ------ 182 Query: 203 AQALYTFI---ESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYL-DYT 258 + LY + + + L + R ++ +R+A E L+ G + D++ Sbjct: 183 -RILYLMYVTNRANAENHFSVDLLKFRFQVPDTMAERKFVYNIRKANEALKLKGLIEDFS 241 Query: 259 EIQRGRT-KFFCIHYRRPRLKAPNDESKENPLPPSPAEKV 297 E+++G F + Y L ++ + + E Sbjct: 242 EVKKGGKTVSFKVKYTYANLHPKKEKKTDISGFENQGEDE 281 >UniRef50_A1VVJ9 Putative uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VVJ9_POLNA Length = 328 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 92/249 (36%), Gaps = 28/249 (11%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P L+R G+F + S +A + TG L D D Sbjct: 86 PNPLIRGGLFSTRTSKARLS-------------FKSAKIASLSN-ADILYTGEELRQD-D 130 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ I+H R+ V+G+ + K + R+ S+ R+ T I Sbjct: 131 LSVWLAIVH-LGRNRVLGEPIYFTAYAIIKDMNW---RMHSDSYARLRNSIDRLKVTSIK 186 Query: 141 FSRTDEKHTREYITHLVQSAYYD----TERDIVQLQADPRLFELYQFDRKVLLQLKAINA 196 + +E+ Y L++ +D + ++ +P + L+ + L++ Sbjct: 187 ITLRNERSG--YAGSLIRDFLFDGLDEAGKSSFVVRLEPPIASLFLHENTTLVEWAQRRQ 244 Query: 197 LKRR-ESAQALYTFIESLPRDPAPISLARLRARLNLKSP-VFSQNQTVRRAMEQLREIGY 254 + + L+ F S R+P P S+++LR + + + + +R+++E L +G Sbjct: 245 IGSKAALTLWLHMFYSSH-REPIPYSVSKLREQCLSEEKDLSNFRARLRKSLETLISVGL 303 Query: 255 LDYTEIQRG 263 L I Sbjct: 304 LVSYAILDD 312 >UniRef50_B0KMB8 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMB8_PSEPG Length = 214 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 10/191 (5%) Query: 70 ITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISP 129 TG LD D W ++H A+ +G + ++ KL G S + R+ + Sbjct: 3 YTGAILDQ-GDLNVWGAVLHQ-AQEQELGSECKVTAYRLLKLLG---KTDSGKNRKDLEA 57 Query: 130 SLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLL 189 + R+ T + + I H V + + + ++ + +L L+ + + Sbjct: 58 CISRLKATALQIEVGGYSYEGSLI-HEVYRGQSERSKRLYVIRLNSKLHVLFNGKQYTNV 116 Query: 190 QLKAINALKRRESAQALYTFIESL--PRDPAPISLARLRARLNLKSPVFSQNQTVRRAME 247 AL + AQ L+ F S P D +L +L + + +RR++E Sbjct: 117 NWSVRQALHGKPLAQWLHGFYSSHAKPYDYKVETLHQLCRSRAKS--LSDFKKDLRRSLE 174 Query: 248 QLREIGYLDYT 258 + + Sbjct: 175 CVVSASAAEGQ 185 >UniRef50_A1WSW7 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WSW7_VEREI Length = 288 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 34/268 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +L+R +F ++ K+ L R +A E + TG RL D Sbjct: 40 PNSLLRSALFAA----IQRGKRPF---------LKRQLMASVEN-ASITYTGIRLCQDY- 84 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W ++H AR +G++ E+ + KL + + R+ + L + T + Sbjct: 85 LTVWECLVHV-AREQQLGNRCEVTTYQLLKLL---DKKDTGGNRQVLRRQLAELQATALE 140 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRR 200 + Y L+ AY+D E + + R+ LYQ D + + L R Sbjct: 141 VRQG----RYTYSGSLIDEAYHDEETGRAIIVLNQRIVALYQGDGYTKVSWQIRRDL-RT 195 Query: 201 ESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFS--QNQTVRRAMEQLREIGYLDYT 258 A+ L+ F + R P P ++A+L + + +T+ A+E L + Sbjct: 196 SLAKWLHGFYATH-RQPFPYTVAKLHELCGSNAKSLKDFEEKTLATALEDLATVAKSHGE 254 Query: 259 EIQ------RGRTKFFCIHYRRPRLKAP 280 + G + R P K P Sbjct: 255 HFRYLVERCPGGKSLVHVT-RNPDAKLP 281 >UniRef50_Q0AD11 TrfA family protein n=2 Tax=Proteobacteria RepID=Q0AD11_NITEC Length = 322 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 25/237 (10%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P R +F K E ++ + TG L ++D Sbjct: 87 PNDYARSSIFTARNKREPRKMLMHEKLFHYNEHIS------------ILYTGIELRAEDD 134 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W+ I+ + +G+ E + + G P + R +R + R+ + Sbjct: 135 EIVWLQILK-YGESVPLGEPFEFSIKDLVRDMGWP---KNGRNYDRARECISRLKANEV- 189 Query: 141 FSRTDEKHTREYITHLVQ----SAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINA 196 + + + + L+Q + + ++ DP L L+ + K Sbjct: 190 LALNTKAYGKSEAISLIQNYTAINDNECKPTQYRVWIDPNLIVLFAGNTFTNHVWKVYRD 249 Query: 197 LKRRESAQALYTFIESLPRDPAPISLARLRARLNLKS-PVFSQNQTVRRAMEQLREI 252 L A+ L +I S + P P++ + R S Q+V++A +++E Sbjct: 250 LS--PVARRLADYIGSH-QHPYPLNAEKFRQMCGSTDKNARSWRQSVKKACAEVQEA 303 >UniRef50_Q6AII2 Related to transcriptional repressor protein TrfA n=1 Tax=Desulfotalea psychrophila RepID=Q6AII2_DESPS Length = 357 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 90/276 (32%), Gaps = 38/276 (13%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARA 62 + GE P R +F K + + ++ Sbjct: 104 PNYGESYRHV--------PNEFTRSALFAVGAKKIPRRLFKNEVIPVIGDNVS------- 148 Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIH--SFARHNVIGDK-VELPFVEFAKLCGIPSSQS 119 + TG L D D W+ +I + + +E F K+ G P Sbjct: 149 -----ITYTGEELRQD-DEDVWLQLIFLCILSDKAIDDSPTIEFTPRYFCKIVGWP---V 199 Query: 120 SRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTE-------RDIVQLQ 172 S ++ ++R+ T + S + + L++ Y Q+ Sbjct: 200 SGYYYTKLEKVIERLKVTGLKVSARNGGD-KVSNLSLIRKYYIRKGAEEDSVRLKTWQVW 258 Query: 173 ADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLK 232 +P + L+ + L+ + + ++ L+ + +S + P P+ + L K Sbjct: 259 LEPEIVRLFARNSYTTLEWDMRMSF-KSALSKWLHGYYKSH-QKPFPVKIETLMKGCGSK 316 Query: 233 SP-VFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKF 267 + + + + +++E+L++ G+L E+ Sbjct: 317 MTCIRNFKKELLKSLEELKKAGFLAKWEVNPKTDIV 352 >UniRef50_A1WSX7 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WSX7_VEREI Length = 273 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 56/256 (21%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P +R +F +++ ++ + LA +G + + TG RLD D Sbjct: 50 PNGFLRSALF----GAIRKGRRRFVKGE---------QLAALDGIE-IHYTGERLDQ-GD 94 Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 + ++H+ R +G + + KL G + + R + ++R+ I Sbjct: 95 LDVYESVLHAV-RLQELGSQCRVTSYALLKLMG---KTDTGKNRATLLTRIERLRANAIR 150 Query: 141 FSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRR 200 + +I LV AY D E + +P+L LY D+ Sbjct: 151 IK----QERYSFIGGLVDEAYKDEETQEWVIVLNPKLRALYGADQFT------------- 193 Query: 201 ESAQALYTFIESLPRDPAPISLARLRARLNLK-SPVFSQNQTVRRAMEQLREIGYLD--- 256 P P + L + + S Q +R+A++ + E Sbjct: 194 ----------------PFPFKVETLLKLCGSEDASPTSGRQKLRKALDAVTEASAAHGEG 237 Query: 257 YTEIQRGRTKFFCIHY 272 ++ RG Sbjct: 238 FSYEIRGDLVHVEKKA 253 >UniRef50_A4MFD9 Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei 305 RepID=A4MFD9_BURPS Length = 211 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 11/195 (5%) Query: 67 KVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRER 126 K++ TG +LD ++ W+ ++H + + +G+ + + G Q Sbjct: 2 KIKFTGVQLD-ESQADVWMQLMHVAS-ASPLGEPFNVHSASILEAMGR---QVGGAEYRW 56 Query: 127 ISPSLKRIAGTVISFS-----RTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 + +++ + + R + + ++ YD R L DPR +Y Sbjct: 57 LRRAMEALYKATLIIDVVNKYRIGDGDSNGDGIRMIDRFRYDASRKQYTLVIDPRWVAMY 116 Query: 182 QFDRKVLLQLKAINALKR-RESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQ 240 + + A+KR ++ A+ L + + L L+ +L SP+ Sbjct: 117 SNQEFARIDWEKRLAIKRGQDMAKTLQRLVATSADKVQRYGLDWLKDKLQYTSPLRKFRV 176 Query: 241 TVRRAMEQLREIGYL 255 +R A+ +L + + Sbjct: 177 ALRAALAELERVEVI 191 >UniRef50_B1G3S5 Putative uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G3S5_9BURK Length = 363 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 76/258 (29%), Gaps = 19/258 (7%) Query: 3 KSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARA 62 + E+ + P +R +F T +S + ++ + Sbjct: 88 RVGAEVYLPGWSATARALPNVFLRSALFAATRGVQADSADLLAGGSTGPVAEEKIGTFK- 146 Query: 63 EGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKV----ELPFVEFAKLCGIPSSQ 118 + +G RL D + + + + ++ F EFA G + Sbjct: 147 --DTTMMFSGYRLCQF-DRLVYSTCLEYYRDLPICPEESLQYQRTTFYEFASRLG---NS 200 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEKHT--REYITHLVQSAYYDT--ERDIVQLQAD 174 S + I SL R++ + + R S + RD + L+ Sbjct: 201 YSVKAHRAIRASLLRLSFAHVRIRQERMNIEVPRLLSVKFEGSESVEGFKGRDALLLRVT 260 Query: 175 PRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSP 234 + EL+ ++ A L F P P+ L Sbjct: 261 TSVAELFGPGAWTAVENDAARY---DGLRGWLANFYAGHA-QPKPLPAELLHQLCGYGPS 316 Query: 235 VFSQNQTVRRAMEQLREI 252 + ++ RA+E+L++ Sbjct: 317 KSNFRASLVRALEKLKDP 334 >UniRef50_A9M4U4 Trans replication factor TrfA1 n=1 Tax=Vibrio sp. 0908 RepID=A9M4U4_9VIBR Length = 262 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 90/259 (34%), Gaps = 28/259 (10%) Query: 20 QPVALMRLGVFVPTLKSLKN--SKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDM 77 P L R +F + +K L D + L + GP L Sbjct: 17 LPNELARYALFTVGTSQERRYYTKPVLLGLIDGSHAPMEL-----------QFVGPELRQ 65 Query: 78 DNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGT 137 D D ++ ++H +AR + K++ E K G + ER+ ++R+ + Sbjct: 66 D-DLDVFLELLH-YARDADLSGKLKFKRAELMKSLGWARTPF---YYERLLQCMRRLGQS 120 Query: 138 VIS--FSRTDEKHTRE--YITHLVQSAYYDTERDI----VQLQADPRLFELYQFDRKVLL 189 + +R D + + +LV S Y + L + + + Sbjct: 121 NLEGLITRRDNGDLIQHRFNFNLVDSFEYKDVNGAMARFWHYRLPVELVKFFTASGFARI 180 Query: 190 QLKAINALKRRESAQALYTFIESL-PRDPAPISLARLRARLNLKSP-VFSQNQTVRRAME 247 LK ALK A+ L + S + +S+ ++ K+ + + Q ++ A++ Sbjct: 181 DLKRRQALKNNHIAKWLQFYFASHKANNKYAVSVEKVMHSCGSKASDLKTFRQKLKAALK 240 Query: 248 QLREIGYLDYTEIQRGRTK 266 L+ G +D + Sbjct: 241 LLKAAGIVDAYIDKDSDRI 259 >UniRef50_A9I2G9 TrfA-related protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I2G9_BORPD Length = 305 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 29/251 (11%) Query: 14 NNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGP 73 N P + R +F P + + +T+ + L +G Sbjct: 53 NETARAIPNYIARSAIFAPVRRGWRTLHDDTVFLEGSNILLKG--------------SGK 98 Query: 74 RLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKR 133 +L D+ W+ ++ ++G+ + +F + G P+ E + +K Sbjct: 99 QLSEDH-ADIWMHAMY-LQTTALLGEAPTINRADFLRGMGRPTG---GSAYEWLHEGMKD 153 Query: 134 IAGTVI---------SFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFD 184 +A + S + KH + ++ Y L ADPR +++ Sbjct: 154 LARFTLCIEARRKDGSVKYSYGKHPSTRVLAMLGGFDYHEPTGSYTLYADPRWAQIFGNR 213 Query: 185 RKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRR 244 L+ + R + +++L I + SL L+ R + ++ R Sbjct: 214 EYALVDWTKRLQM-RHDLSKSLQRLIGTSADIQQKYSLDILKQRAQYTGRMRDFRTSLER 272 Query: 245 AMEQLREIGYL 255 ++ +L + + Sbjct: 273 SLTELEALQVI 283 >UniRef50_Q21TW5 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TW5_RHOFD Length = 359 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 88/232 (37%), Gaps = 17/232 (7%) Query: 30 FVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIH 89 F+PT + + + + ++ EL + LA G + TGP L + W+ ++ Sbjct: 73 FLPT-ELTRAGLIRSPANSNDRPELVKQELAMGRGIQSLVYTGPELGPK-EETAWLAVLM 130 Query: 90 SFARHNVIGDKVELPFVEFAKLCGIPSSQSS-RRLRERISPSLKRIAGTVISFSRTDEKH 148 AR ++G ++ E K+CG+ S + +R R L R++ S T + Sbjct: 131 -LARTQMLGTRIYFKIAELLKICGLNDSADNFVAMRMR----LSRLSQAHFSIDYTRKVA 185 Query: 149 TRE----YITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 204 + THL+ + E + DP +LY L +Q Sbjct: 186 GKSRKFHVETHLLG-FEIEQETGDTVVWLDPSGVQLYSN--LSYQPWDVRLGLA-TGISQ 241 Query: 205 ALYTFIESLPRD-PAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYL 255 L T++ +D I + L+A P + + A+++L G + Sbjct: 242 QLLTYVSGHAQDKQQTIKVEELQALFGYNGPTSRFVRACKSALKELEVGGII 293 >UniRef50_Q47035 Rep protein (Fragment) n=2 Tax=Escherichia RepID=Q47035_ECOLX Length = 66 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 65/66 (98%), Positives = 65/66 (98%) Query: 260 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLE 319 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPS AEKVSPEMAEKLALLEKLGITLDDLE Sbjct: 1 IQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSSAEKVSPEMAEKLALLEKLGITLDDLE 60 Query: 320 KLFKSR 325 KLFKSR Sbjct: 61 KLFKSR 66 >UniRef50_A4VG61 Putative uncharacterized protein n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG61_PSEU5 Length = 226 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 11/182 (6%) Query: 90 SFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFS------R 143 +FA+ +GD V L + + + SS+ E + S+KR+ + Sbjct: 37 AFAQPFPLGDPVLLNRKQLLRKIKRGAIGSSQ--YEWLYRSMKRLREATLFLEALKPDGS 94 Query: 144 TDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKR-RES 202 T R ++++S YD+E L DP ++ L+ + ++R + Sbjct: 95 TRYTVGRMESFNILKSLSYDSETYRYTL--DPHWILMFGNREYSLIDWEKRLQIRRGLDM 152 Query: 203 AQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQR 262 A+ L I + +L RLRA++ + ++ RA+ +L + + IQ Sbjct: 153 AKTLQRLIATSSDRVQRYALERLRAQMAYGGRLRDFRDSLGRAVCELERLEIIARGCIQE 212 Query: 263 GR 264 Sbjct: 213 SS 214 >UniRef50_UPI00016AFE57 hypothetical protein Bpse38_35412 n=2 Tax=pseudomallei group RepID=UPI00016AFE57 Length = 302 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 74/244 (30%), Gaps = 21/244 (8%) Query: 15 NNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPR 74 NNN V AL R +F S + S + R L + + G + Sbjct: 22 NNNLVTAHALARSAIF---------STRFYRSHAERPLYRERTRLPSTSDIEVFQTAGHQ 72 Query: 75 LDMDNDFKTWVGIIHSFARHNVIGDK---VELPFVEFAKLCGIPSSQSSRRLRERISPSL 131 LD D + ++ + V E + + + R+ + SL Sbjct: 73 LDQ-GDADVFYELLRRVFVSGNETCRESHVVFSRAELPRALERSAG---GKTRKLLDESL 128 Query: 132 KRIAGTVISFSRTDEKHTRE-YITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQ 190 R+ FS + I + Q + + D L L+ ++ +L+ Sbjct: 129 DRLYRAEFEFSVHGLLSGKSRLILKMHQLDKTTAAGEDYDILLDVELARLFDGNQWTILR 188 Query: 191 LKAINALKRRESAQALYTFIE--SLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQ 248 L + A+ L+ S P P +L L R + A+ Sbjct: 189 RSQRRLLDGKPLAKGLHALFSTWSTPYPMLPETLLPLVGRQG--MQQSKWLDVLLPALAA 246 Query: 249 LREI 252 ++ + Sbjct: 247 VKLV 250 >UniRef50_C5A9D3 TrfA family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5A9D3_BURGB Length = 368 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 14/249 (5%) Query: 4 SSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAE 63 + GE P+ P AL+R +F + + + R +T + R +A Sbjct: 22 TGGEETVAWPSPFT---PNALLRFALFGA--QRERMAAAKIFPRQSSTTD-GRFLIAETA 75 Query: 64 GFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRL 123 + ++E G +D + +G V + E + S + L Sbjct: 76 HY-RIEYDGDEALNADDLMVLLVCFAIARNAGDMGAYVPISLSECNRYLWKSRSGKNTLL 134 Query: 124 RERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQF 183 +L R+ I + R+ + D+ + ++ D + L++ Sbjct: 135 ---FRQALMRLYKGYIKITVDGVGIKRQRFLANYDNDDTDSNNPVYWIRIDKGMAPLFEA 191 Query: 184 DRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLK-SPVFSQNQTV 242 D + A A+ L+ F + S+ L+ P+F + Sbjct: 192 DATEI--DVVRMAHLNSYLAKWLHGFYSTHDGK-KDYSVGELQELSGSSYLPLFKFRAKL 248 Query: 243 RRAMEQLRE 251 R A+++L E Sbjct: 249 REAVKELME 257 >UniRef50_C4KBK1 Putative uncharacterized protein n=1 Tax=Thauera sp. MZ1T RepID=C4KBK1_THASP Length = 363 Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 78/259 (30%), Gaps = 40/259 (15%) Query: 8 LVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDK 67 L ++ P L+R ++ S +A +G Sbjct: 89 LYLPVSRSDTVALPNVLLRSALW---------------SSANAAALFVTDQNVPTQGDAS 133 Query: 68 VEITGPRLDMDNDFKTWVGIIHSFARHNVI-----GDKVELPFVEFAKLCGIPSSQSSRR 122 + +TG + D + + + + + + + ++ + + Sbjct: 134 IRLTGRMMRG-YDRRVLAACLSCMPADQPLCVGTRPNWICVSVWQLSQKLQVAFGR---N 189 Query: 123 LRERISPSLKRIAGTVISFSRTD-----------EKHTREYITHLVQSAYYDTERDIVQL 171 + + SL R+ + + TR + SA D+V Sbjct: 190 VHAAVLESLGRLDDAWLRVRLKGNDLPACRLLELDDDTRALVLSDNHSAQR--GSDLVTF 247 Query: 172 QADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNL 231 + L L+ + A++ + L ++ + P P+S+ LR+ Sbjct: 248 RIPAELAALFGPASWSAVSEAALHDHSGLPA--WLASYYSTHA-VPYPLSIVALRSWSGS 304 Query: 232 KSPVFSQNQTVRRAMEQLR 250 + + ++RA+ QL+ Sbjct: 305 VCDLREFRRRLKRALAQLQ 323 >UniRef50_A9AX68 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX68_HERA2 Length = 1077 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 20/196 (10%) Query: 144 TDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRK-VLLQLKAINALKRRES 202 + T HLV+ A V A RL EL Q D V+L+ KAI AL RRE+ Sbjct: 646 KQTEQTDHQHPHLVEYAQRLAYLSEV---APTRLIELAQLDAPIVVLRDKAIEALSRRET 702 Query: 203 AQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRR--------AMEQLREIGY 254 + + T IE+L A +++ LR R+ L+ P+ +R A E LR IG Sbjct: 703 SDGVATLIEALDDARARVAIYALR-RVLLRMPIDQALAILRNVPSTKITVAKETLRLIGD 761 Query: 255 LD----YTEIQRGRTKFFCIHYRRPRLKAPNDESKEN---PLPPSPAEKVSPEMAEKLAL 307 L Y E+ R T + A N+ + + P + E L Sbjct: 762 LKNQAAYQELLRWSTLELHHDVWIALVHALNNYINQVETWAIFERLLNHDEPTVVESLTT 821 Query: 308 LEKLGITLDDLEKLFK 323 + G T L +L + Sbjct: 822 ISLAGQTPSMLPQLLQ 837 >UniRef50_Q1MP07 NA n=2 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MP07_LAWIP Length = 349 Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 35/275 (12%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLD--MD 78 P L R F P + + L + + + ++ TGP+L + Sbjct: 78 PTDLTRCSPFFPMNP-KELGNREFLRDF----------IITSANWGEITYTGPKLSTYEE 126 Query: 79 NDFKTWVGIIHSFARHNVIGD-------KVELPFVEFAKLCGIPSSQSSRRLRERISPSL 131 + + I++ + H + + P + KL G ++ S++ R+ L Sbjct: 127 DTLMALLAILNGVSHHRKPTEVEGKKTYTYKGPALPLLKLLGY--TKPSKKDYNRLIRGL 184 Query: 132 KRIAGTVISFSRTDEKHT--------REYITHLVQSAYYDTERDIVQLQADPRLFELYQF 183 K + + + K + Y+T ++ + ++D ++ + + +P +E Y Sbjct: 185 KLLTVAGVELTLAGGKTKAGKRREPKKRYMTSMLSAVFWDDDKKELAVTVNPFFYEAYYA 244 Query: 184 DRKVLLQLKAINALKRRESAQALYTFIESLPRDP-APISLARLRARLNL--KSPVFSQNQ 240 ++ + LK A+ALY F++S +D L LN+ + P++ Q Sbjct: 245 KTITMIDVLKRVGLKGS-IAKALYRFVQSHKKDLVFTGHFLTLADALNMDREQPLWKTRQ 303 Query: 241 TVRRAMEQLREIGYL-DYTEIQRGRTKFFCIHYRR 274 ++ A+ +L + L + Sbjct: 304 MLKLALAELIKHQLLTKKSRFVEQDIILIEREQTT 338 >UniRef50_C9M9S4 TrfA-related protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9S4_9BACT Length = 193 Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 19/137 (13%) Query: 2 DKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 + G++ + P+ ++R +F + + T + + E Sbjct: 74 EPQLGKITLPKIAEGHCATPIQILRTSLFGLVRPGRRKVLQKTCYKKNGCE--------- 124 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 V G LD D W+G +H + V + EF K G+ +S S+ Sbjct: 125 ------VSYIGIELDQK-DLDIWMGFMHFYREQADHNGCVSVSIYEFLKQLGLSNSGSNH 177 Query: 122 RLRERISPSLKRIAGTV 138 ++ + SLKR+ Sbjct: 178 KI---LKESLKRLTSGA 191 >UniRef50_Q30VH2 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VH2_DESDG Length = 266 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 30/194 (15%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDND 80 P AL+ +F + ++RL LA + + +G RLD D Sbjct: 42 PSALLASDLFQAVYARKRPV-------------VSRLPLASTDSARTMLYSGERLDQF-D 87 Query: 81 FKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVI 139 + + S A G V + A+ P R R + + SL+R+A ++ Sbjct: 88 LDVLLACMESSAHTGRRTGTCVGMMTGGIARAMKRP---DDRATRRKTALSLQRMACGLL 144 Query: 140 SFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPR----LFELYQFDRKVLLQLKAIN 195 S Y ++ D+ +D ++ P+ L L ++ Sbjct: 145 EVSNGRL----HYTLRIINRLLLDSTQDRCVVEFSPQVFAALRSLPDMRSFT----RSRF 196 Query: 196 ALKRRESAQALYTF 209 AL+ R + L+ Sbjct: 197 ALRARSLERWLHGM 210 >UniRef50_Q1MXJ2 Putative uncharacterized protein (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1MXJ2_9GAMM Length = 252 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 27/223 (12%) Query: 65 FDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPF--------------VEFAK 110 F V GP L++ D T +G++H + G ++P + Sbjct: 21 FGSVSRFGPGLNIF-DEDTLIGLMHIARDKKLDGHPTKMPAQLTGDGSVVVHVGETSALE 79 Query: 111 LCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQ 170 L S E S+ R++ T + + + T + Sbjct: 80 LNRFLRRGVSEPELEATRASVSRLSKTTLQIYSSTTDVEGD--TKFFDYVGQRNVKGKFL 137 Query: 171 LQADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLN 230 +Q P + +L+ ++ V+L AL ++ +A++ F+ S+ ++ I L L ++ Sbjct: 138 VQFRPEVVKLF--EQYVVLDFDLRTALS--DTGKAVHRFLCSINKNRFSIKLDDLATAIS 193 Query: 231 LKSPVFSQNQTV------RRAMEQLREIGYLDYTEIQRGRTKF 267 T+ +E +++ G++ E+Q K Sbjct: 194 YSGRKTDFKNTLFGTKTKPSQLEMMQKKGFIVDYELQGTGRKI 236 >UniRef50_C1A4Q4 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4Q4_GEMAT Length = 285 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 69/219 (31%), Gaps = 34/219 (15%) Query: 72 GPRLDMDNDFKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPS 130 G RL D +V ++H + + F + G ++ R E++ + Sbjct: 54 GDRLPGTFDQDVYVELLHRYHEAGAPADGAITFTLHAFLRSMGR---RADGRTYEQLRAA 110 Query: 131 LKRIAGTVI-SFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQ------- 182 L R+ T + S + T + +R V AD L+ Sbjct: 111 LSRLERTTLESIGAYWSAQSAHADTSFTVLSTVSVQRRRV---ADREQLHLFGNLAAGEP 167 Query: 183 FDRKVLLQLKAINALKRR---------------ESAQALYTFIE---SLPRDPAPISLAR 224 D +V L L R A+ LY +E + R I L R Sbjct: 168 GDARVTLSGTLRANLAARHVVTISAARYHALSSPVARRLYRILEVARADGRLSWRIPLER 227 Query: 225 LRARLNLKSP-VFSQNQTVRRAMEQLREIGYLDYTEIQR 262 L +L L + ++ A E L G + I++ Sbjct: 228 LAEQLPLTQRYPSHLQRVLQPAHEMLLSAGLVRDIAIRQ 266 >UniRef50_A4JVF1 Putative uncharacterized protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVF1_BURVG Length = 463 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 85/295 (28%), Gaps = 55/295 (18%) Query: 14 NNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGP 73 ++ + L + +F + E ++ + G Sbjct: 186 SDTVRIMATDLNKTSLFHVASNNTARRFCRDEPLGRIGETVSAV------------YRGE 233 Query: 74 RLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKR 133 L D D + ++ AR + + V F K + ++S + + + SL R Sbjct: 234 ELRHD-DELVLMQLMQV-ARGKYPYEWFSIFSVPFFKGSRGVTRRASSKDIDSVMESLAR 291 Query: 134 IAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKA 193 + G + T I L S +Q DP L LY L Sbjct: 292 MRGGYLVVKSRSNYITVNLIKDLAGSGSN------HHVQIDPALIILYS----SFTALDT 341 Query: 194 INALKRRESAQALYTFIESLP---RDPAPISLARLRARL----------NLKSPVFSQNQ 240 + K A+ L +I ++P D PI + L ++ + Sbjct: 342 DHLFKTSGVARQLLKYISTIPSAYEDTRPIKITSLFELCYGTLDSLERHYRETNPGKTDA 401 Query: 241 TVRRA----------------MEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 VR A ++ L+E+ + ++ K + R P Sbjct: 402 QVRIAMSKKLSDFRRKNLPAGLDNLKEMNIIRSYKLDESTDK--VVINRNPDASP 454 >UniRef50_B6IXW9 Putative uncharacterized protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IXW9_RHOCS Length = 299 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 96/243 (39%), Gaps = 25/243 (10%) Query: 32 PTLKSLKNSKKNTLSRTDATEELTRLS-LARAEGFDKVEITGPRLDM----DNDFKTWVG 86 P + S+KN + + A + RL + +G +E+ G + D +F ++ Sbjct: 17 PLIGSVKNERSIMVYNFFALTKEKRLDPIRYQDGKVTIEVKGTDAGIATIYDKEFLIYIA 76 Query: 87 --IIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRT 144 ++ R + +F ++C + + + +RIS +L+R+ GT I + Sbjct: 77 SLMVDKMNRGEPVSQVFSFSGHDFFRVCRVSAG---GKSYDRISGALERLQGTQIKTNIE 133 Query: 145 DEKHTREYITHLVQSAY----YDTERDIVQLQADPRLFE-LYQF---DRKVLLQLKAINA 196 + ++SA +T+ + V + L + LY+ D ++L A Sbjct: 134 TGGEGTDEWFSWLKSAKAEYRKNTKGERVLKRITVELCDWLYRAILKDNRMLTYDPAYFD 193 Query: 197 LKRRESAQALYTFIESLPRDP--APISLARLRARLNLKSPVFSQNQTVRRAMEQ---LRE 251 L + LY + + I+L +LR R+ ++ + + + E+ L E Sbjct: 194 LP--PLEKRLYEMARAHCGNQPGFKINLEKLRLRVGAETDLRQFRYKLAKIAEKKSPLPE 251 Query: 252 IGY 254 G+ Sbjct: 252 YGF 254 >UniRef50_A7IJQ2 Replication protein A n=14 Tax=Alphaproteobacteria RepID=A7IJQ2_XANP2 Length = 391 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 21/238 (8%) Query: 36 SLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWV--GIIHSFAR 93 SL S + +A R+ G + D D W I+ + Sbjct: 53 SLSKSHRTAPIDFNAGGVSIRVEAVADHGMATI--------WDADILIWAASQIVEARDT 104 Query: 94 HNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVI--SFSR--TDEKHT 149 + E K G + S R +R+ +L R+ T I S + +H Sbjct: 105 GLRTSRLMVATPYEILKFIGRGT---SLRDYQRLKAALDRLQSTTICTSIRQPAEGRRHR 161 Query: 150 REYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTF 209 +I + + D ++L + D VL +A L + LY Sbjct: 162 FSWINEWKERTDRSGKPDGIELIVPDWFYRAVLDDALVLTIDRAYFDLTG-GLDRWLYRI 220 Query: 210 IESL---PRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGR 264 + R+ L + SP +R + + GY + EI+ G Sbjct: 221 VRKHGGRQRNGWRFDFRHLHQKSGALSPFKRFAFELRDIIRRQPLPGYRLFLEIEAGG 278 >UniRef50_D2L841 Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L841_9DELT Length = 282 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 10/228 (4%) Query: 54 LTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCG 113 L + LA + G RLD D D ++G R + +L Sbjct: 58 LEGVELATCWEGAAIRFCGERLDQD-DLDAFLGCALLAFRDGGRTGAARFHLRDLMRLIR 116 Query: 114 IPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQA 173 + + R R+ SL R+A + DE L+ + D I + Sbjct: 117 PRGRRFATR---RLERSLWRLASARLEIE--DEAGDIHIQARLLNTLLCDRAAGICAVDV 171 Query: 174 DPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKS 233 PR+ E + V L L + L + + + L LR L Sbjct: 172 SPRIMEGLRGAPGVERLLAIRTPLASSAFHRWLAALL-AHGPACLRLELPALRRLSGLTR 230 Query: 234 -PVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAP 280 P+ + A++ ++G + I+ I R + P Sbjct: 231 QPMPAFRIRAIAALQDFLDLGAI--AAIEPAGPDRLVIERPVARGEEP 276 >UniRef50_C4GNC9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GNC9_9NEIS Length = 326 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 26/219 (11%) Query: 80 DFKTWVGIIHSFARHNVIGDKV----ELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D W+ I + + + +F + +S R + + +L R+A Sbjct: 117 DKDVWIYCISALINAQNNNEPINRVVRFTAYDFLVS---TNRNTSGRYYQLLREALFRLA 173 Query: 136 GTVISFSRTDEKHTREYITHLVQSAY--YDTERDI------VQLQADPRLFELYQFDRKV 187 GT I + + E L+ Y E D +++ LF + K Sbjct: 174 GTRIITNVKTGNYRLESNFGLLDKVDIIYKDETDENSPIIAIEVTLPDWLFR--SIEAKQ 231 Query: 188 LLQLKAINALKRRESAQALYTFIESL--PRDPAPISLARLRARLNLKSPVFSQNQTVRRA 245 + + A R+ + +Y + ISL L + + + Q A Sbjct: 232 VKTISADYFRLRKPLDRRIYELCAKHCGKQKEWHISLEILHRKSGSMATLRRFRQ----A 287 Query: 246 MEQLREIGYL---DYTEIQRGRTKFFCIHYRRPRLKAPN 281 +++L L + + L N Sbjct: 288 IKELVASNDLPDYRLSYDDKRDVLKVQNRDLSKFLSLKN 326 >UniRef50_C1XVJ4 Plasmid replication initiator protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XVJ4_9DEIN Length = 467 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 41/254 (16%) Query: 80 DFKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTV 138 D + +I + + + G + S + + SL R+ Sbjct: 68 DNDVSLALITLYQEAGSPEDGTIVTTAYRILSVIGWDT---SGHYYQALKESLDRLTTAT 124 Query: 139 ISFSRTDEKHTREYITHL--VQSAYYDTERDI--------VQLQADPRLFELYQFDRKVL 188 + S + + Y +E D ++++ + E + Sbjct: 125 FTASEAWRSGKKWTTVKFRYIDRLEYTSEDDKLGLSGQSVLKIKLAREIVESIRAKYLKP 184 Query: 189 LQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARL--------NLKSPVFSQNQ 240 L L+ + +L R +ALY +++ P + + R + + + Sbjct: 185 LDLEFLTSLDR-PLTRALYRLLDAQRVAPEGGEVTQFRTNIVEWAKACKIVDQTPSRVRR 243 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPE 300 T+ A +L E GYL E Q R P+ + +K+ LP E Sbjct: 244 TLEGAHAELVERGYLAAVEYQG----------RGPKQEVIYTFAKQATLPE--------E 285 Query: 301 MAEKLALLEKLGIT 314 E +A L + G++ Sbjct: 286 AREVVARLSRYGVS 299 >UniRef50_Q1J3K3 Plasmid replication initiator repA-related protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J3K3_DEIGD Length = 467 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 26/211 (12%) Query: 80 DFKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTV 138 D +++ + V + ++ G+ + S R + SLKR+ T Sbjct: 61 DTDISAALVNLYIDQGAPADGSVTCTPYQLLQMAGLDT---SGRYYAALDESLKRLLTTN 117 Query: 139 ISFSRTDEKHTRE--------YITHL---VQSAYYDTERDIVQLQADPRLFELYQFDRKV 187 + H R+ YI L ++++ + + Sbjct: 118 YFIAEGWRDHPRKRWTNVNFRYIDRLEFTSGDENRLDASSVLKITLPQEIARSVRSGYLK 177 Query: 188 LLQLKAINALKRRESAQALYTFIESL---PRDPAPISL-------ARLRARLNLKSPVFS 237 L L + LKR + +ALY ++S P +P +S+ A + Sbjct: 178 PLDLSFMQTLKRPPT-RALYRLLDSQRRDPENPERVSMTYEVGLMEWAEACKIVTDRPSL 236 Query: 238 QNQTVRRAMEQLREIGYLDYTEIQRGRTKFF 268 +T+ A E+L E G+L E K Sbjct: 237 AQRTLDAAHEELLEKGFLKSVEYLGRGKKKI 267 >UniRef50_A3T343 RepA n=2 Tax=Rhodobacteraceae RepID=A3T343_9RHOB Length = 314 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 13/182 (7%) Query: 78 DNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D D +V ++ + IG +V + + K + ++ + + +L R+ Sbjct: 41 DRDILIYVLSQLMAAKNEGQEIGRRVRISAHDLLKA---TNRHTTGQAYATLRRALTRLQ 97 Query: 136 GTVISFSRTDEKHTREYITHLVQSA---YYDTERDIVQLQADPRLFELYQFDRKVLLQLK 192 T I + D + A D+ ++ ++ + + + + K +L L Sbjct: 98 FTQIETNIHDHGLGEWRSISFITDARIVKEDSTGRLLSVELEMGDWLVKAIENKNVLTLH 157 Query: 193 AINALKRRESAQALYTFIESLPRDPA--PISLARLRARLNLKSPVFSQNQTVR---RAME 247 R+ + LY I L +L+ + S + V+ RA E Sbjct: 158 KAYFQLRKPLERRLYELARKHCGKQEVWRIGLDKLQHKTGSTSTSKEFKRLVKAICRADE 217 Query: 248 QL 249 QL Sbjct: 218 QL 219 >UniRef50_A1VX58 Plasmid replication initiator protein-like protein n=2 Tax=Proteobacteria RepID=A1VX58_POLNA Length = 312 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 15/179 (8%) Query: 80 DFKTWV----GIIHSFAR-HNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRI 134 D W+ +I + R + + V F P +R+ +L R+ Sbjct: 117 DKDVWIYCTSQLIEAMNRGRDDVSRTVRFTAYNFLVTTNRP---VDGDSYKRMGDALARL 173 Query: 135 AGTVISFSRTDEKHTREYITHLVQSAYYDTER---DIVQLQADPRLFELYQ-FDRKVLLQ 190 GT I + + L+ S + +V ++ + LY+ K +L Sbjct: 174 RGTSIETNIITDGQRERAGFGLIDSWRVIEKTAGGRMVAVEVTLSDW-LYRSIKAKQVLT 232 Query: 191 LKAINALKRRESAQALYTFIESL--PRDPAPISLARLRARLNLKSPVFSQNQTVRRAME 247 L R+ + + +Y + ++ L + + + +TV+ +E Sbjct: 233 LSPDYFRIRKPADRRMYELARKHCGAQRQWQCTIKTLYEKSGSTANLREFRRTVKTLVE 291 >UniRef50_Q07GE2 RB100 n=6 Tax=Rhodobacterales RepID=Q07GE2_ROSDO Length = 335 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 87/300 (29%), Gaps = 29/300 (9%) Query: 12 TPNNNNTVQPVA---LMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKV 68 P + QP+ F K + ++ + R L ++ Sbjct: 5 NPTGSAMGQPIPQGDFFVCDFFAAVPKHDLAAMEH--PLFSLSTRPDRRILNYTHNDAEI 62 Query: 69 EIT----GPRLDMDNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRR 122 IT G D D + ++ + + L + G + S Sbjct: 63 TITPSVKGRATIFDADILIFCISQLMAAINAGKKTARHLTLTAHDLLLATGRET---SGD 119 Query: 123 LRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDI-VQLQADPRLFE-L 180 +R+ + +R+AGT I+ + T L++S + L E L Sbjct: 120 GYKRLRDAFERLAGTRITTNITTGAQETTSGFGLIESWEIVRRTRAGRMVSVSVTLSEWL 179 Query: 181 YQ-FDRKVLLQLKAINALKRRESAQALYTFIESL-PRDPAP-ISLARLRARLNLKSPVFS 237 Y+ K +L L R+ + LY R P +S+ L + SP Sbjct: 180 YRAVLSKSVLTLSRDYFSLRKPLERRLYELARKHCGRQPVWRVSVETLLKKSGSTSPRRV 239 Query: 238 QNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHY-------RRPRLKAPNDESKENPLP 290 +R E + +YT ++ R P+L E P Sbjct: 240 FRAMLR---EIITRDPLPEYTLVEEPGDIIAVRPQTLVDLPERAPQLSPEALEEARRLAP 296 >UniRef50_Q1MNR9 NA n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MNR9_LAWIP Length = 452 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 42/314 (13%), Positives = 101/314 (32%), Gaps = 64/314 (20%) Query: 21 PVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTR----------LSLARAEGFDKVEI 70 P ++ R+ F P K + + A+ + L + + ++ Sbjct: 131 PTSISRVSPFFPMNNKEKGRRDIIVKNLKASIQDKSKIVESSCYLINELVSSGPWGEIIY 190 Query: 71 TGPRLDMD----------------------------NDFKTWVGIIHSFARHNVIGDK-- 100 TGP+L ++ ND ++ + ++ Sbjct: 191 TGPKLSIEEEDALMALLAIIEMGKLDRTPTRKTQRQNDDDM-EQLVDDLPPAKLSPEQTA 249 Query: 101 -----------VELPFVE----FAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS-FSRT 144 + + +L G + E++ SLK +A + F R Sbjct: 250 TLIGNSKNTLPLSFTYRGPVLPILRLMG--HKRPGANHYEKLITSLKSLALGSMQLFVRE 307 Query: 145 DEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQ 204 + + ++ ++ + + + + +P +++Y + + + + R A+ Sbjct: 308 KGEDLQYDLSQIISNLRLRPKDREISVTVNPFFYQMYLANSLTWINITKRFQI-RGSIAK 366 Query: 205 ALYTFIESLPRDP-APISLARLRARLNLK--SPVFSQNQTVRRAMEQLREIGYLDYTEIQ 261 A+Y F +S +P ++ L LN+ P+ + +R A+ +L E L+ T + Sbjct: 367 AMYRFCQSHRDNPVFRGNIMTLALALNMDPHVPLKETRRQIREAIAELVEKKVLESTSLL 426 Query: 262 -RGRTKFFCIHYRR 274 R Sbjct: 427 SRTNLVLLNRTAEA 440 >UniRef50_A8IP54 Replication protein A n=67 Tax=Bacteria RepID=A8IP54_AZOC5 Length = 369 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 13/213 (6%) Query: 78 DNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D D W I+ + + E G + S R +R+ +L R+ Sbjct: 73 DADILIWAASQIVEARDAGLRTSRLMAATPYEILTFVGRGT---SLRDYQRLKAALDRLQ 129 Query: 136 GTVISFS----RTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQL 191 T +S S +H +I + + D V L + D VL Sbjct: 130 STTVSTSIRQPAEGRRHRFSWINEWQERTDRNGRPDGVDLILPDWFYRAVLDDALVLTID 189 Query: 192 KAINALKRRESAQALYTFIESL---PRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQ 248 +A L + LY + +D L + SP ++ + + Sbjct: 190 RAYFGLTG-GLERWLYRLVRKHGGRQQDGWRFDFRHLHQKSGSLSPFKRFAFELKDLIRR 248 Query: 249 LREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPN 281 GY+ + E++ G P + + Sbjct: 249 QPLPGYMLFVEVEVGGRLLLAFEPASPCGQPVD 281 >UniRef50_B9KX96 Plasmid replication initiator protein RepA n=4 Tax=Rhodobacteraceae RepID=B9KX96_RHOSK Length = 368 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 66/209 (31%), Gaps = 14/209 (6%) Query: 78 DNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D D + ++ + I + L + + S +R+ + +R+A Sbjct: 108 DKDILIYCVSQLMAALNAGRAISRTLHLTAHDLMTATHRET---SGDGYQRLREAFERLA 164 Query: 136 GTVISFSRTDEKHTREYITHLVQSAY---YDTERDIVQLQADPRLFELYQFDRKVLLQLK 192 GT I+ + L++S +VQ+ + K +L L Sbjct: 165 GTRITTNMEVGGREITTGFGLIESWQIVRRSRGGRMVQVMVTLSEWLFQAVLTKSVLTLS 224 Query: 193 AINALKRRESAQALYTFIESL-PRDPAP-ISLARLRARLNLKSPVFSQNQTVRRAMEQLR 250 R+ + +Y + P +S+A L + SP+ + +R + Sbjct: 225 RDYFRLRKPLERRIYELARKHCGQQPEWRVSIATLAKKSGSASPLRVFRKMIRDMIAADS 284 Query: 251 EIGYLDYTEIQRGRTKFFCIHYRRPRLKA 279 GY + + C+ R L Sbjct: 285 LPGY---SLAEEPGDL-LCVTRRAAVLAP 309 >UniRef50_B4EE90 Putative plasmid replication-associated protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EE90_BURCJ Length = 325 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 63/234 (26%), Gaps = 15/234 (6%) Query: 80 DFKTWVGIIHSFA----RHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D W+ I R I V +F + S R R+ L R+ Sbjct: 93 DKDLWIYCISQLVAAKNRGREITRTVRFTAYDFLHSTNRDT---SGRAYIRMGEMLARLT 149 Query: 136 GTVISFSRTDEKHTREYITHLVQSA---YYDTERDIVQLQADPRLFELYQFDRKVLLQLK 192 GT I + L+ SA D +V ++ + D + L Sbjct: 150 GTRIETNIETAGKRERGFFGLIDSAKVIERDGGDRMVAVEVTLPDWLFRSVDAMQVKTLS 209 Query: 193 AINALKRRESAQALYTFIESLPRDP--APISLARLRARLNLKSPVFSQNQTVRRAMEQLR 250 R+ + +Y + S+A L + +F ++ Sbjct: 210 PNYFRLRKPLDRRIYELACKHCGNQPTWKSSIATLHEKSGSADKLFKFRAAIKALAASGE 269 Query: 251 EIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEK 304 Y + + F+ P+ + LP + + A K Sbjct: 270 LPDYRMAYDPKADNVTFY---ANGPKGYRAEIAAIMKGLPHTSVKAREKAHARK 320 >UniRef50_B4YK20 RepA n=1 Tax=Tetrathiobacter kashmirensis RepID=B4YK20_9BURK Length = 253 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 19/212 (8%) Query: 80 DFKTWVGIIHSF----ARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D W+ + ++ I + +F + S E+ SL+R++ Sbjct: 40 DKDVWIYCVSKLMQAKFKNLPISRNIRFSTYDFLISTNRQTGGSQ---YEQFKQSLERLS 96 Query: 136 GTVISFSRTDEKHTREYITHLVQSA---YYDTERDIVQLQADPRLFELYQ-FDRKVLLQL 191 GT IS + L+ +A D + V ++ + LY+ + +L + Sbjct: 97 GTRISTEIETGGLRQADFVGLIDNARVIEEDIQGRTVAVEITLPNW-LYRSVEHNEVLAI 155 Query: 192 KAINALKRRESAQALYTFIESLPRD-PAP-ISLARLRARLNLKSPVFSQNQTVRRAMEQL 249 R+ + +Y + P ISL L + + + + R A+ L Sbjct: 156 SKDYFRLRKPIDRRIYEIARKHCGNKPEWKISLELLHKKTGITDVLRNF----RVAINSL 211 Query: 250 REIGYLDYTEIQ-RGRTKFFCIHYRRPRLKAP 280 + L ++ + R P + A Sbjct: 212 AKADVLPDYHVKFEKESDSVIFSNRDPDIGAK 243 >UniRef50_A8ZRM1 Plasmid replication initiator repA-related protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=A8ZRM1_DEIGD Length = 477 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 88/254 (34%), Gaps = 35/254 (13%) Query: 80 DFKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTV 138 D V +++++ + + G+ ++ ER++ SL R+ Sbjct: 67 DGDILVSLLNAYVEAGCPEDGVIYVTPYAVLTGPGLA---VTKAYYERLAKSLARMKSAT 123 Query: 139 ISFSRTDEKHTRE----YITHLVQSAYY------DTERDIVQLQADPRLFELYQFDRKVL 188 S + R +L+ Y ER +++Q R+ + + Sbjct: 124 YSITDGWFDLERARYLTVTFNLLTDVEYTHGDQGLDERSTLRIQLSERITKSIRDGYVKP 183 Query: 189 LQLKAINALKRRESAQALYTFIE---------SLPRDPAPISLARLRARLNLKSPVFSQN 239 L L L A+ LY ++ S +SL A+ + + + Sbjct: 184 LNLSLYRQLSSSG-ARTLYRMLDLRLFEQAQGSKAPYHLTVSLLDWGAQCGI---LDTAP 239 Query: 240 QTVRRAME----QLREIGYLD---YTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLP-P 291 +RRA+E L GYL Y+ I R + + R + + E+ + P Sbjct: 240 DKIRRALEPMHASLLNEGYLHSVSYSGIGRRTSILYVYGERSALAEPEHVEALKRYGVHP 299 Query: 292 SPAEKVSPEMAEKL 305 + AEK + E+ K+ Sbjct: 300 TQAEKYARELGSKV 313 >UniRef50_C7JJ87 Plasmid replication initiator RepA n=16 Tax=Proteobacteria RepID=C7JJ87_ACEP3 Length = 366 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 58/175 (33%), Gaps = 14/175 (8%) Query: 78 DNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D D + +I + + + L + + Q+ +R+ + +R+A Sbjct: 97 DKDILIYCISQLIAKMNQGELPNRTLHLTARDLLV---WTNRQTDGDGYKRLRSAFERLA 153 Query: 136 GTVISFSRTDEKHTREYITHLVQ-----SAYYDTERDIVQLQADPRLFELYQFDRKVLLQ 190 GT I+ + + L+ + +++ LF + + + +L Sbjct: 154 GTRITTNIKADGEEVTEGFGLINEWRIVRKTNSGQMSEIKVTLSEWLFRM--IEGRSVLT 211 Query: 191 LKAINALKRRESAQALYTFIESL--PRDPAPISLARLRARLNLKSPVFSQNQTVR 243 L R+ + +Y ++ +S+ L+ + S + +R Sbjct: 212 LHRDYFRLRKPLERRIYELARKHCGAQEKWVVSIEILQKKTGASSHIRVFRSMLR 266 >UniRef50_C5SIJ5 RepA n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIJ5_9CAUL Length = 401 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 77/237 (32%), Gaps = 19/237 (8%) Query: 77 MDNDFKTWVG--IIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRI 134 D D + I+ + + + +F + + S + +L R+ Sbjct: 127 YDKDLILYCTSHIVRAVNEGRPVSPTIRFSAYDFLQ---FANRTKSGVAYNSLRDTLVRL 183 Query: 135 AGTVISFSRTDEKHTREYITHLVQSA-----YYDTERDIVQLQADPRLFELYQFDRKVLL 189 GT I+ + K E + L++ D ++++ + +L Sbjct: 184 NGTRITTNIVTGKERHESVFGLIEHGTIISETRDGRMKEIEVKLSE--WVFRGIANAEVL 241 Query: 190 QLKAINALKRRESAQALYTFIESL--PRDPAPISLARLRARLNLKSPVFSQNQTVRRAME 247 L RR + LY ++ +S+ + K P+ + VR +E Sbjct: 242 TLHQDYFRLRRPLERRLYELARKHCGSKEEWAMSMELCMKKAGSKGPLKEFRRMVREIVE 301 Query: 248 QLREIG-YLDYTEIQRGRTKFFCIHYRRP----RLKAPNDESKENPLPPSPAEKVSP 299 + + DY+ G + F R + A + K NP + A V+P Sbjct: 302 DNEQTDHFPDYSVAIEGDSIVFRRKARAKLGGRKEPAKVAQPKLNPDSYAKARAVAP 358 >UniRef50_A1VBN8 Putative uncharacterized protein n=4 Tax=Desulfovibrio vulgaris RepID=A1VBN8_DESVV Length = 299 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 85/267 (31%), Gaps = 32/267 (11%) Query: 5 SGELVTLTPNNNNT---VQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLAR 61 +G L P + + + P + +F T + ++ + + Sbjct: 35 TGGLAAWNPADERSFGDLMPALFLASDLFAATYLRGARAGCRRVNPLVPSAAVAC----- 89 Query: 62 AEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 GP LD D ++ + R ++ E A+L G+ + Sbjct: 90 ---------EGPWLDQ-GDLDVYLACVSLALRQGARTSRLRCHVEEAARLAGMGGRTGAV 139 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 R R+ R+ D++ T + L+ S +D +++ F+ Sbjct: 140 RFANRLK----RLHEA--RMECGDDRFTAQV--QLLSSVVHDVAAGGLRIDFGHEFFDAL 191 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQT 241 + + AL R + L + +L RD I L RLRA + + Sbjct: 192 RLSSGTARFIADRAALGRDALGKWLLGVVWTL-RDTCLIDLQRLRA-----LAANDKGRD 245 Query: 242 VRRAMEQLREIGYLDYTEIQRGRTKFF 268 +++ +++ GY+ + Sbjct: 246 IQQLLQEFARRGYIRDMVTRSDGLVII 272 >UniRef50_C6CR33 Replication C family protein n=1 Tax=Dickeya zeae Ech1591 RepID=C6CR33_DICZE Length = 279 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 60/285 (21%) Query: 28 GVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGI 87 G+F + K + + R + +++E +GP +D + G+ Sbjct: 20 GLFRAISPGQRRRDKLEV-------------IYRLDNGNQIEFSGPEPLGADDLRVLQGL 66 Query: 88 IHSFARHNVIGDKVELPFV----EFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSR 143 + + A G K+ E + ++++ + SL+++A Sbjct: 67 V-ALAGLESQGGKIGPVASGETREILRDLLQLRGIANQQDVLVVKSSLRKLAK---EIGY 122 Query: 144 TDEKHTREYITH---------------------LVQSAYYDTERDIVQLQADPRL-FELY 181 + + T L+ + D D + + +P L + Sbjct: 123 ANPRDTNTVRRSVERLWKVSVIAKVAGLRSGFRLLANYTNDALTDGLVVALNPLLTNAIL 182 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLPR--DPAPISLARLR------ARLNLKS 233 R + L + L R +A+ L+ + + P+ L +L Sbjct: 183 GNGRYTYIDLAEVRQL-RNSTARILHQRLCAWIDCGRSKPVGLDKLVSYAFPDKSSAATD 241 Query: 234 PVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLK 278 +R+A+++L E+G I F I P L Sbjct: 242 RKRQSR--IRQALDELAELG----WSISEHAKGRFTIGR--PALS 278 >UniRef50_A0R862 Plasmid encoded RepA protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R862_PELPD Length = 288 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 17/182 (9%) Query: 81 FKTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS 140 W I+ + + +F K G+ R R+ ++R+ I Sbjct: 76 LLAW--IVTEAVQTKSRTLTLGHSLSDFLKELGLSRQGGERGDITRLRQQMRRLFSCSIR 133 Query: 141 FSRTDEKHTREY------ITHLVQSAYYDTERDIVQLQADPRLFELYQFD---RKVLLQL 191 D KH L + + + + L E + + + L + Sbjct: 134 CEYQDGKHDAGIGFMVADSYSLWWHPQEEKQAGLWESTL--TLSEKFYQEITAAPIPLDM 191 Query: 192 KAINALKRRESAQALY---TFIESLPRDPAPISLARLRARLNLK-SPVFSQNQTVRRAME 247 +A+ ALKR + LY TF S + P IS +L+ + + + + + R AM Sbjct: 192 RALKALKRSPMSLDLYMWLTFRNSYLKTPTVISWQQLQQQFGAEYNRTRAFREAFRDAMR 251 Query: 248 QL 249 ++ Sbjct: 252 KV 253 >UniRef50_A9AU55 Putative uncharacterized protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU55_BURM1 Length = 374 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 77/259 (29%), Gaps = 32/259 (12%) Query: 36 SLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHN 95 SL+ K + E++ R+ + G + D D + + A + Sbjct: 86 SLQKGKDTRVRVYRNGEQIVRI-IPSGVGAANI--------FDKDLLVYAATLICKAADS 136 Query: 96 --VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYI 153 + ++ +F K + ERI S +R+ GT+I + + Sbjct: 137 DIPVSRRIRFKVRDFLKYTRRSTG---GASYERIVDSCRRLKGTIIETNFDTTRPGANEA 193 Query: 154 T--------HLVQSAYYDTERD------IVQLQADPRLFELYQFDRKVLLQLKAINALKR 199 L+Q T V+L ++L + +L L Sbjct: 194 GIHETLRGYGLIQEYSVITYTANRKGALEVELVLSSWTYDLLLS--RRILTLHPGYFDLG 251 Query: 200 RESAQALYTFIESLPRDP--APISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDY 257 + + LY + D I L +L + + + + AM+ + + Sbjct: 252 QGLERRLYDLAKKHCGDKLWFKIGLEKLYGKSGSAQALKYFRRDLIAAMKADKLPEFHIA 311 Query: 258 TEIQRGRTKFFCIHYRRPR 276 + + FF R Sbjct: 312 LDDDKAMVVFFRCDRDNRR 330 >UniRef50_A4XE01 Plasmid encoded RepA protein n=4 Tax=Sphingomonadaceae RepID=A4XE01_NOVAD Length = 434 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 71/240 (29%), Gaps = 37/240 (15%) Query: 86 GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERI-SPSLKRIAGTVISFSRT 144 + +R +G F E+ + G + R + + R+ Sbjct: 122 QAVTKRSRDVYLGR----NFTEWMRRLGYQTVSYGPRGTANLMREQVDRLLACEWQIRWE 177 Query: 145 DEKHTREYITHLVQSAYYDTE-RDIVQLQADP--------RLFELYQ---FDRKVLLQLK 192 + A D + + + R+ E + D V L Sbjct: 178 GNEGGDNAF------AVRDVKISNEYAGSLEKNGAFAREIRMSEAFYSHLLDHAVPLNEV 231 Query: 193 AINALKRRESAQALYTFIE-SLPR----DPAPISLARLRARLNLKSPVFSQNQTVRRAME 247 AI LK +A LYT++ LPR IS +L L + QTVR M Sbjct: 232 AIRELKGTPTALDLYTYLAYRLPRIGSDRGQVISWDQLAKHLGNDADSKRFRQTVRETM- 290 Query: 248 QLREIGYLDYTEIQRGRTKFFCIHYRRP-----RLKAPNDESKENPLPPSPAEKVSPEMA 302 QL Y + GR P +L P+ P + P+MA Sbjct: 291 QLVSAVYPNADVDFSGRKVVL---RPSPAPLERKLVGPHLRVIGAPALETAPRSSVPKMA 347 >UniRef50_Q07GB5 RepA n=4 Tax=Rhodobacteraceae RepID=Q07GB5_ROSDO Length = 334 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 10/176 (5%) Query: 78 DNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D D + ++H R IG +V E + P +R+ + KR+ Sbjct: 69 DKDILIFCISQLMHMKNRGEKIGKRVRFSARELSIATNRPVG---GDHYKRLEQAFKRLQ 125 Query: 136 GTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQL---QADPRLFELYQFDRKVLLQLK 192 GT + + K I LV A + + D +L + + + + ++ + Sbjct: 126 GTQFTTTIRTGKKPGVKIFSLVDQAGFVMQEDTWRLDYCEVVLSDWLMRAIEANEVVTIT 185 Query: 193 AINALKRRESAQALYTFIESLPRDPAP--ISLARLRARLNLKSPVFSQNQTVRRAM 246 RR + +Y + I LA L+ + +P+ +R+ + Sbjct: 186 NDYFRLRRPLERRIYEIARKHCGEQKKWQIGLANLQNKTGSNAPLKKFRLNIRQII 241 >UniRef50_Q63WD6 Putative replication protein n=1 Tax=Burkholderia pseudomallei RepID=Q63WD6_BURPS Length = 287 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 83/275 (30%), Gaps = 54/275 (19%) Query: 10 TLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVE 69 +P + QP+ G+F + K L + G V Sbjct: 3 RTSPTHAKLAQPIVHA-PGLFHSLAPGERKRDK--------------LDVTHVAGDTTVR 47 Query: 70 ITGPRLDMDNDFKTWVGII-------HSFARHNVIGDKVE------------------LP 104 G D + G+I + R G + Sbjct: 48 FVGFEPLDSTDLRVLQGLIALATAGLRNIRRLLRDGQSLRTSLDLKGDAQDERTVAARFT 107 Query: 105 FVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDT 164 A + G R ++ SL+R++ + R + + LV D Sbjct: 108 LASLADMAGFDRGGFGCR---QMRASLQRLSNVTVLVDRPEFEGAF----RLVSGYRLDK 160 Query: 165 ERDIVQLQADP-RLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPR-DPAPISL 222 + + P + + L + + + E A +++ + + + D P+++ Sbjct: 161 HTGELVVSISPLGTTAILGRQGYLRLNMDEVRRIHG-EVAHLIHSRLHWVNQGDRRPVNM 219 Query: 223 ARLRA----RLNLKSPVFSQNQTVRRAMEQLREIG 253 L + + S + + VR+A+++L ++G Sbjct: 220 DTLCSYAYVGVRTGSALRKRRMAVRQALKELMDVG 254 >UniRef50_Q19SU6 RepC n=40 Tax=root RepID=Q19SU6_ECOLX Length = 241 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 18/162 (11%) Query: 101 VELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSA 160 V+ + AK G + S + I ++R+ +S + + + + L+ Sbjct: 69 VKGSYRALAKEIG--AEVDSGGALKHIQDCIERLWK--VSIIAQNGRKRQGF--RLLSEY 122 Query: 161 YYDTERDIVQLQADPRLF-ELYQFDRKVLLQLKAINALKRRESAQALY----TFIESLPR 215 D + + +P + + + V + + + AL E+A+ L+ +I+ P Sbjct: 123 ASDEADGRLYVALNPLIAQAVMGGGQHVRISMDEVRALD-SETARLLHQRLCGWID--PG 179 Query: 216 DPAPISLARLRA----RLNLKSPVFSQNQTVRRAMEQLREIG 253 S+ L S + + Q VR A+ +L +G Sbjct: 180 KTGKASIDTLCGYVWPSEASGSTMRKRRQRVREALPELVALG 221 >UniRef50_A9H5J3 Putative replication protein A n=3 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9H5J3_GLUDA Length = 357 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 73/240 (30%), Gaps = 22/240 (9%) Query: 11 LTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSR-TDATEELTRLS--LARAEGFDK 67 + P ++ QP R FV T + ++ + R A + RL R+ + Sbjct: 1 MMPAADSWRQPDR--R---FVVTGSARPRDIRDLMGRPFFALGHVARLEPLRYRSRQMEI 55 Query: 68 VEITGPRLDM----DNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSR 121 V L M D D W+ I+ + + V + G Sbjct: 56 VVEASAPLGMATIRDADILLWLTGQIVDALNHDLWVSRHVRFTPWRLFQDLGWADGTHQ- 114 Query: 122 RLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELY 181 R+ +L R+A T ++ S RE + E D V L L E+ Sbjct: 115 --YRRLHGALARLAETRVTTSLRQGPEWREKPFAWISDVRISRE-DGVALTLPDWLMEMA 171 Query: 182 QFDRKVLLQLKAINALKRRESAQALYTFIESLP---RDPAPISLARLRARLNLKSPVFSQ 238 VL A L + LY +D L L AR SP + Sbjct: 172 CDRSHVLSVDPAYFRLYG-GLERWLYRLARRHAGRQKDGWRFDLRDLHARSGTLSPWRNF 230 >UniRef50_C1D2L5 Putative Plasmid replication initiator protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1D2L5_DEIDV Length = 455 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 33/259 (12%) Query: 80 DFKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTV 138 D I+ + + + K G+ S R + +L R+ Sbjct: 49 DGDIATAIMDLYVESGCPDDGLLHTTAYQILKRAGLD---DSGRYYTNLKQTLYRLRTAT 105 Query: 139 ISFSRTDEKHTRE----YITHLVQ--------SAYYDTERDIVQLQADPRLFELYQFDRK 186 S S H R + +Q + ++++ + + Sbjct: 106 YSASEAWRDHRRGNWTTVTFNYLQGLEFTSGDEDLNLSRSSALRIRLAEPIVRSVRSQYT 165 Query: 187 VLLQLKAINALKRRESAQALYTFIES---LPRDP------APISL-ARLRARLNLKSPVF 236 L ++ + +L R +ALY +++ P DP ++L A + Sbjct: 166 KPLDIEFLTSLDR-PLTRALYRLLDARRYSPEDPRTPRMTYSVNLIDWAAACKIIDQRSN 224 Query: 237 SQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLP---PSP 293 T++ A ++L E YL+ E K I YR + E P Sbjct: 225 KIRSTLQGAHDELIERQYLESVEYDGRGKKQ-VITYRFVEVGGRKAELDLQSSPVMAELV 283 Query: 294 AEKVSPEMAEKLALLEKLG 312 KVS +A +L +E+ G Sbjct: 284 GHKVSISVARRL--MEEFG 300 >UniRef50_Q53W40 Putative uncharacterized protein TTHB126 n=3 Tax=Thermus RepID=Q53W40_THET8 Length = 463 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 59/210 (28%), Gaps = 23/210 (10%) Query: 80 DFKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTV 138 D + + +I + + KL G + S + SL R+ Sbjct: 78 DNEVSLALIALYLNAGSPPDGTFTTTAYQILKLMGFDT---SGYYYRALKESLLRLTTAT 134 Query: 139 ISFSRTDEKHTREYITHLV---------QSAYYDTERDIVQLQADPRLFELYQFDRKVLL 189 S R ++++ + Q + Sbjct: 135 YVLSEAWRADGRWQSVSFRYIDKLEFTSGKEGSLDRSSVIRITLAKEIVRSLQNRYTKPI 194 Query: 190 QLKAINALKRRESAQALYTFIES---LPRDPAPIS------LARLRARLNLKSPVFSQNQ 240 ++ + +LKR ++ALY +++ P P++ + A + + Sbjct: 195 DIEFMASLKR-PLSRALYRLLDAQRLSPEREEPLAQLEVGLMEWAAACKIVHKRPDKVRR 253 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRTKFFCI 270 T+ A +L E YL E + Sbjct: 254 TLEPAHRELIERRYLRSVEYVGRGKNQTIV 283 >UniRef50_Q9RYE9 Putative uncharacterized protein n=1 Tax=Deinococcus radiodurans RepID=Q9RYE9_DEIRA Length = 402 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 45/258 (17%) Query: 80 DFKTWVGIIHSFARHN-VIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTV 138 D +G++++ D V L E +L GI S R + SL+R+ T Sbjct: 16 DNDVLLGLVNAVVLQGMPQDDTVRLTTRELLQLSGI---TPSARAYRNLQASLRRLQHTA 72 Query: 139 ISFSRT-----DEKHTREYITHLVQSAYYDTERD-----IVQ------LQADPRLFELYQ 182 + + + + +V+ D D + ++ D L + Sbjct: 73 YDVTDSWYDGSRHRWRSVSFSLIVRLGAEDNTADVTNAGQWRAQTLLAIRLDDSLISNIR 132 Query: 183 FDRKVLLQLKAINALKRRESAQALYTFIE-------SLPRDPAPISLARLRARLNL-KSP 234 + L + + L + + L+ + P + L L + + Sbjct: 133 AGHILPLDFEMLARLS-QPLTRNLFRTLSFQRDQVGQEPVLAFAVPLNTWATHLGMHEMR 191 Query: 235 VFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYRRPRLKAPNDESKENPLPPSPA 294 + + + ++ A E+L IG+L E RGR K +HY + + Sbjct: 192 LDTVMRALKPAHEELIAIGFLREVEY-RGRGKTRMVHYTFAS---------------TKS 235 Query: 295 EKVSPEMAEKLALLEKLG 312 V PE LA G Sbjct: 236 AAVDPEAIAVLARYGVSG 253 >UniRef50_Q1N8B2 Possible replication protein A n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N8B2_9SPHN Length = 439 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 16/177 (9%) Query: 78 DNDFKTWVGI-IHSFARHNV--IGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRI 134 D D ++ ++ + + L + K S R ER+ +L R+ Sbjct: 80 DADIMIYLASHLNELRERGENDLSPTIRLQPGDLLKRVCWG---ISGRAYERLIGALDRL 136 Query: 135 AGTVISFSRTDEKHTREYITHLVQSAY--YDTERDIVQLQADPRLFELY---QFDRKVLL 189 T I + +RE + S D L + L + + D++ +L Sbjct: 137 QATTIKTNIRANSKSRETTFSWIDSYTHLVDERTQR-SLGMEITLSKWFFDGVMDKRNVL 195 Query: 190 QLKAINALKRRESAQALYTFIESLPRDP----APISLARLRARLNLKSPVFSQNQTV 242 + + + LY I L + +S + S + Sbjct: 196 AISPLYFEITSGLGKWLYRASRKHAGGNGVEGFTIGFETLHQKSGSESSLPSFKNKI 252 >UniRef50_A9HQY5 Putative replication protein A n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HQY5_GLUDA Length = 282 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 18/218 (8%) Query: 64 GFDKVEITGPRLDM---DNDFKTWV--GIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQ 118 G V +T + D D W + + R+++ + G Sbjct: 31 GDLAVRVTSEHTNATIWDADILIWAISALKATRYRNDLPPGRFRETRHALLAFLGR---T 87 Query: 119 SSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLF 178 +S ER+ +L R+A T ++ + + + +++L+ L Sbjct: 88 ASGGQYERLPAALDRLATTRVTITPGTASSRAV---SFTWLSEWSHRGGVIELRIADWLR 144 Query: 179 ELYQFDRKVLLQLKAINALKRRESAQALYTFIESLP-RDP--APISLARLRARLNLKSPV 235 + + +L L + + LY R P LA LR + + V Sbjct: 145 D-AALAPRAVLALDPRYFALKGGLERRLYLLARRHAGRQPGGWSFDLAHLRRKTGIAPSV 203 Query: 236 FSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFCIHYR 273 V R + + GY GR +H+R Sbjct: 204 RDFPAAVARIVRRQSLPGY---RLTLEGRDARVRLHFR 238 >UniRef50_UPI00016C4D67 replication protein A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4D67 Length = 310 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 61/233 (26%), Gaps = 19/233 (8%) Query: 78 DNDFKTW--VGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIA 135 D D W + + R + + K R+ +L R+ Sbjct: 72 DADILIWASTQVTEALDRGHAPSRVIHFHPYNLLKSVRRSVG---GDHYRRLREALNRLT 128 Query: 136 GTVISFSRTDEKHTREYITHLVQSAYYD-----TERDIVQLQADPRLFELYQFDRKVLLQ 190 T +S + + + H ++S + E + + L+ V L Sbjct: 129 HTAVSTNIRVQGKKKSASFHWLESWTEEVNEATGETAHMTMTLPDWLYTGIVAKGGV-LT 187 Query: 191 LKAINALKRRESAQALYTFIESLP-RDPA--PISLARLRARLNLKSPVFSQNQTVRRAME 247 + L + LY PA ++ +L A+ + VR+ +E Sbjct: 188 IHEDYFLLTGGIERWLYRVARKHAGTQPAGWTFTMRQLYAKSGSAARFSDFALDVRKVVE 247 Query: 248 QLREIGY-LDYTEIQRGRTKFFCIHYR----RPRLKAPNDESKENPLPPSPAE 295 Y L F PR + P + + Sbjct: 248 ADSLPEYALAVHRTAEDEVVTFLPRCHLPPADPRFQPPRARHRHAKATIAEPA 300 >UniRef50_UPI0001BC648D chromosomal replication initiator protein dnaA n=3 Tax=Fusobacterium RepID=UPI0001BC648D Length = 581 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 103/336 (30%), Gaps = 45/336 (13%) Query: 29 VFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGII 88 VF +N + N D + +L E + L ++ T++ + Sbjct: 74 VFPFFTPQKQNRRVNFKYYFDDLGVTMKSTLV-VENNKDIVFQPSIL--EDKIYTFLLSL 130 Query: 89 HSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKH 148 + + + +E +F ++ +R +I +LK + T+ FS + K Sbjct: 131 YERKEEDDDEEYIEFEISDFVVD--FLGNKMNRTYYTKIEQALKNLKRTMYEFSINNHKK 188 Query: 149 TREY-----ITHLVQSAYYDTERDIV-QLQADPRLFELYQFDRKVLLQLKAI-NALKRRE 201 +Y + L+ + + +++ + + + Q R ++ KA+ L + Sbjct: 189 LGDYKFESELFQLLDYEKRKRGKKVYYKVRLNRNIRKKIQEKRYIIYNSKALIEILNKDH 248 Query: 202 SAQALYTFIESLPRDP--------------APISLARLRARLNLKS-------PVFSQNQ 240 A +Y +I + P+ + + R + Sbjct: 249 IAARIYKYISQIRYKTGEKNVTNIRTLAAIIPLKVEQETERETKTGVKKYILNRLKPVLT 308 Query: 241 TVRRAMEQLREIGYLDYTEIQRGRT-------KFFCIHYRR-----PRLKAPNDESKENP 288 + +A + L E GY+ E + + F LK +S E Sbjct: 309 RICKAFDVLVEFGYILQYETEYNKEEDTYYLTYIFNKEKDNTCHISSYLKPKKKKSIEQK 368 Query: 289 LPPSPAEKVSPEMAEKLALLEKLGITLDDLEKLFKS 324 E+ EK + + E + S Sbjct: 369 TKMRNQNIEEAEVVEKTKKTKGKSYEEEFSETILAS 404 >UniRef50_Q2Y567 Plasmid replication initiator protein-like n=4 Tax=Proteobacteria RepID=Q2Y567_NITMU Length = 410 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 80/259 (30%), Gaps = 23/259 (8%) Query: 33 TLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEIT-----GPRLDMDNDFKTWV-- 85 +LK + + + ++LT +G +E++ G D D +V Sbjct: 148 SLKDDHATMEAPVFSLKTQKDLTPWEWTSKDGTKHIEVSPSVKYGRATQHDKDILIFVTS 207 Query: 86 GIIHSFARHNVI--GDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVIS--F 141 + + R V + P+ +R+ +L R+ GT I Sbjct: 208 QMTEALNRERPDTQSRAVRFTVHNYLVATNKPTG---GVEYQRLERALDRLKGTTIKTDI 264 Query: 142 SRTDEKHTREY----ITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINAL 197 +++ + +++ + D V++ L+ +L + Sbjct: 265 KTGNKRVKEAFGILDSWAIIERSSSDERMIAVEITLSKWLYN--AIHAHEVLTIHPDYFR 322 Query: 198 KRRESAQALYTFIESL---PRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGY 254 R+ + LY + I L LR + +S + + V+ Y Sbjct: 323 LRKPLERRLYELARKHCGSKQSSWKIGLELLREKCGAQSHIRAFRNQVQEISNAHTLPEY 382 Query: 255 LDYTEIQRGRTKFFCIHYR 273 E + + F+ + + Sbjct: 383 HLIYEREADQVTFYVKNQQ 401 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.128 0.314 Lambda K H 0.267 0.0393 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,574,168,455 Number of Sequences: 3077464 Number of extensions: 54486755 Number of successful extensions: 217854 Number of sequences better than 1.0e-01: 93 Number of HSP's better than 0.1 without gapping: 77 Number of HSP's successfully gapped in prelim test: 74 Number of HSP's that attempted gapping in prelim test: 217507 Number of HSP's gapped (non-prelim): 153 length of query: 325 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 196 effective length of database: 643,403,500 effective search space: 126107086000 effective search space used: 126107086000 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 93 (40.5 bits)