07/01/2012 04:35:08 : INFO  : Run start: Sat Jan  7 04:35:08 GMT 2012
07/01/2012 04:35:10 : INFO  : Initialised job
07/01/2012 04:35:11 : INFO  : Renaming log file 'phyre2_20120107_043508.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/aa25a37f94086163/phyre_20120107_043508.log'
07/01/2012 04:35:11 : INFO  : Initialised job:
Sequence
>batch____
MESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGYGNFTSIPWFAFLGEGQEAS
NGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQS
YYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIP
ETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYED
FIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYIFIIDEINRANLSKVFGEVMMLMEHD
KRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFD
TPQFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSP
DTQWLNEIVMTDIAPLLEEYFFDDPYKQQKWTNKLLGDS

07/01/2012 04:35:12 : INFO  : Checked sequence
07/01/2012 04:35:13 : INFO  : Finding homologues with PSI-BLAST
07/01/2012 04:35:13 : INFO  : PSI-BLAST 3 iterations
07/01/2012 04:37:30 : INFO  : PSI-BLAST 5 iterations
07/01/2012 04:41:10 : INFO  : Finished PSI-BLAST
07/01/2012 04:41:11 : INFO  : Running Buildali to generate a3m file
07/01/2012 04:52:57 : INFO  : Converting to HMM
07/01/2012 04:53:02 : INFO  : Calibrating HMM
07/01/2012 04:53:18 : INFO  : Searching HMM database
07/01/2012 05:03:57 : INFO  : Finished buildali
07/01/2012 05:03:58 : INFO  : Predicting secondary structure
07/01/2012 05:04:01 : INFO  : Predicted secondary structure (PSI-Pred)
07/01/2012 05:04:02 : INFO  : Predicting Disordered regions
07/01/2012 05:04:03 : INFO  : Predicted Disorder (Disopred)
07/01/2012 05:04:04 : INFO  : Running memsat_svm check
07/01/2012 05:06:15 : INFO  : Running memsat_svm full
07/01/2012 05:12:49 : INFO  : Predicted Transmembrane (memsat_svm) ID 'aa25a37f94086163'
07/01/2012 05:12:50 : INFO  : Initialising fold library search
07/01/2012 05:12:51 : INFO  : Initialised search input
07/01/2012 05:12:52 : INFO  : Building Ensemble models
07/01/2012 05:12:54 : INFO  : Building hh.c1qvrB_.model.1.pdb
07/01/2012 05:13:01 : INFO  : Building hh.c1r6bX_.model.2.pdb
07/01/2012 05:13:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/aa25a37f94086163/hh.c1r6bX_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/aa25a37f94086163/c1r6bX_.2.pdb
07/01/2012 05:13:08 : INFO  : Building hh.c3pxiB_.model.3.pdb
07/01/2012 05:13:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/aa25a37f94086163/hh.c3pxiB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/aa25a37f94086163/c3pxiB_.3.pdb
07/01/2012 05:13:16 : INFO  : Building hh.d1svma_.model.4.pdb
07/01/2012 05:13:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/aa25a37f94086163/hh.d1svma_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/aa25a37f94086163/d1svma_.110.pdb
07/01/2012 05:13:25 : INFO  : Building c1qvrB_.1.pdb
07/01/2012 05:13:32 : INFO  : Building c1r6bX_.2.pdb
07/01/2012 05:13:38 : INFO  : Building c3pxiB_.3.pdb
07/01/2012 05:13:44 : INFO  : Building c2r44A_.4.pdb
07/01/2012 05:13:49 : INFO  : Building d1r6bx3.5.pdb
07/01/2012 05:13:56 : INFO  : Building c3cf1C_.6.pdb
07/01/2012 05:14:02 : INFO  : Building c3nbxX_.7.pdb
07/01/2012 05:14:09 : INFO  : Building d1jbka_.8.pdb
07/01/2012 05:14:15 : INFO  : Building c2p65A_.9.pdb
07/01/2012 05:14:21 : INFO  : Building d1qvra3.10.pdb
07/01/2012 05:14:27 : INFO  : Building c1xwiA_.11.pdb
07/01/2012 05:14:33 : INFO  : Building c2zamA_.12.pdb
07/01/2012 05:14:39 : INFO  : Building c3eihB_.13.pdb
07/01/2012 05:14:45 : INFO  : Building c3hteC_.14.pdb
07/01/2012 05:14:51 : INFO  : Building c3b9pA_.15.pdb
07/01/2012 05:14:57 : INFO  : Building d1g41a_.16.pdb
07/01/2012 05:15:03 : INFO  : Building c3d8bB_.17.pdb
07/01/2012 05:15:09 : INFO  : Building d1um8a_.18.pdb
07/01/2012 05:15:16 : INFO  : Building d1ofha_.19.pdb
07/01/2012 05:15:23 : INFO  : Building d1g8pa_.20.pdb
07/01/2012 05:16:05 : INFO  : Finished HH model building
07/01/2012 05:16:06 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
07/01/2012 05:17:01 : INFO  : html domain output complete ID 'aa25a37f94086163'
07/01/2012 06:25:06 : INFO  : Run end  : Sat Jan  7 06:25:05 GMT 2012
