58 c1jalA_ Probab=99.73   E-value=1.6e-17  Score=122.19  Aligned_columns=166  Identities=16%

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC----------CCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             9579998189889989999984760----------002356577643418999962893699984146566652148999
Q batch____        36 EPVIGIMGKTGVGKSSLCNALFAGD----------ISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYA  105 (287)
Q Consensus        36 ~p~Ial~G~~~~GKSTLiNaL~g~~----------~~~v~~~~~tt~~~~~~~~~~~~~~i~l~d~pg~~~~~~~~~~~~  105 (287)
                      +..|||+|.||||||||+|+|+|.+          ++.+.+.+.+|...........+.++.++|+||+...........
T Consensus         2 ~~~iglvG~pn~GKSTl~n~LT~~~pf~Ti~pn~g~v~v~d~~~~~~~~~~~~~~~~~~~i~liD~pGl~~~a~~g~~~~   81 (348)
T c1jalA_           2 GFKCGIVGLPNVGKSTLFNALTKAGPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLG   81 (348)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTCCCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGT
T ss_pred             CEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf             42899963889889899999957898643366206999568675200012355545780599997576557864210379


Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHHHHHHHH-----------------------------------------
Q ss_conf             999984100791799983578899-88999999998730-----------------------------------------
Q batch____       106 ALYREQLPRLDLVLWLIKADDRAL-TVDEHFYHQVIGEV-----------------------------------------  143 (287)
Q Consensus       106 ~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~~~~~~-----------------------------------------  143 (287)
                      ..+...+..+|++++|+|+..... ..+...+..-+...                                         
T Consensus        82 ~~~l~~ir~aD~ii~Vvd~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~  161 (348)
T c1jalA_          82 NKFLANIRETDAIGHVVRCFENIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAG  161 (348)
T ss_dssp             CCHHHHHHTCSEEEEEEECSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999997489899995058899878999999999986088876312788864210256652136899999997310244


Q ss_pred             ---------------------CCCCEEEECCHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-----
Q ss_conf             ---------------------699599984002236642001105789899799999767641168852897515-----
Q batch____       144 ---------------------YRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSV-----  197 (287)
Q Consensus       144 ---------------------~~~~~i~V~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa-----  197 (287)
                                           ..+|+++|+|+.|..................             ....++++||     
T Consensus       162 ~~~~~~l~~~e~~~l~~~~~l~~KP~i~v~Nk~d~~~~~~~~~~~i~~~~~~-------------~~~~vi~vsa~~E~e  228 (348)
T c1jalA_         162 MIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAK-------------EGAVVVPVCAAIESE  228 (348)
T ss_dssp             CGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHH-------------TTCEEEEECHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCEECCCEEEEEECCCCCCCCCHHHHHHHHHHHC-------------CCCCEEEECHHHHHH
T ss_conf             3333468988999986433110078899997110365532378999998513-------------798299973899998


Q ss_pred             -----------------CCCCCHHHHHHHHHHHC
Q ss_conf             -----------------88488788999999842
Q batch____       198 -----------------RLQWGLKVMAERMIKCL  214 (287)
Q Consensus       198 -----------------~~~~~l~~L~~~l~~~l  214 (287)
                                       ..+.+++.+...+.+.|
T Consensus       229 l~~l~~~e~~~~l~~~~i~~~~l~~l~~~~~~~L  262 (348)
T c1jalA_         229 IAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL  262 (348)
T ss_dssp             GGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred             HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             8733755668877670876214899999998521