BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (184 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot... 379 e-104 UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya... 184 1e-45 UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=... 177 1e-43 UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib... 166 3e-40 UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot... 164 1e-39 UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure... 156 3e-37 UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel... 152 4e-36 UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph... 115 6e-25 UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ... 106 5e-22 UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ... 97 2e-19 UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari... 75 8e-13 UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ... 69 9e-11 UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell... 60 5e-08 UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp.... 57 2e-07 UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi... 44 0.003 UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly... 42 0.008 >UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria RepID=YTFJ_ECOLI Length = 184 Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/184 (100%), Positives = 184/184 (100%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK Sbjct: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN Sbjct: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 Query: 181 KLLK 184 KLLK Sbjct: 181 KLLK 184 >UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703 RepID=C6CAS8_DICDC Length = 201 Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/185 (49%), Positives = 128/185 (69%), Gaps = 2/185 (1%) Query: 1 MTLRKILALTCLLL--PMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58 MT R L +LL P AH + +P + ++D GEL + Y +W+SAQLV Sbjct: 1 MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60 Query: 59 GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118 GKVR++QHIAGR SA+ N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR +E Sbjct: 61 GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120 Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178 + K YPW+QF++D+ G AWQL +S+AV+VLDK+GR+++ KDG+L +EVQQV++L Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180 Query: 179 LQKLL 183 LQ LL Sbjct: 181 LQVLL 185 >UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ Length = 183 Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 121/183 (66%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 M + ++AL P +A AH G VP +G+ GE+VL + +Y+ W SA L+GK Sbjct: 1 MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+ FV+SS + + Sbjct: 61 VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 KK +PWS ++D G+ AWQL ESSA++V DK G V + K+GAL ++Q V+ L+Q Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180 Query: 181 KLL 183 + L Sbjct: 181 QNL 183 >UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales RepID=Q5E822_VIBF1 Length = 183 Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 114/179 (63%) Query: 5 KILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVL 64 K+L L LLP ++ AH + VP + I GE+ +Y+ WN+ QL GKVRVL Sbjct: 5 KLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGKVRVL 64 Query: 65 QHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLY 124 Q IAGR+SAK NA L+ AI K P YQTTTI+N DD+I G+G FV+SS E +K+ + Sbjct: 65 QAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEESKEEF 124 Query: 125 PWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183 WS ++D +G AW L ESSA++V DK+G++ + K+G L+ +E++QV+ L+ L Sbjct: 125 SWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIHTQL 183 >UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria RepID=C9PS15_9PAST Length = 191 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 112/179 (62%) Query: 6 ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65 +L L + AH + + P+ + + GEL + D SYK W+S QLVGKVR++ Sbjct: 13 VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72 Query: 66 HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125 H AGR K++N TLI AIK+A+ +YQTTTI+N DDA G+G FV+S E KK P Sbjct: 73 HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132 Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184 SQ ++D G AWQL E+ + V+VLDK G+V++ +GAL+ +VQ+V+ L+ +L K Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191 >UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae RepID=Y045_HAEIN Length = 184 Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 4 RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++ILAL C ++ AH + Q +P + +++ GE+VL ++ W SA+L GKVR Sbjct: 3 KQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKVR 62 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122 V+ H+AGRT+AKE N ++I+ IK++ +YQTTTI+N DDAI G+GMFV++ + K+ Sbjct: 63 VVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGKQ 122 Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182 P SQ ++D AW L+ + SA++VLDK G+V++ K+G L+ ++Q V+ L+ L Sbjct: 123 ENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNGL 182 Query: 183 LK 184 K Sbjct: 183 TK 184 >UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FG85_9GAMM Length = 182 Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%), Gaps = 1/179 (0%) Query: 3 LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 ++KIL + L L +A +H G+ +P + ITD+G + L + F Y+ W SA+L KV Sbjct: 1 MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 ++QHIAGRTSAKE N +I+A+ +A P ++Y T T+VN D++I G+G V S ++SNK Sbjct: 61 ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 + +P + F++DS G W L E+SSA+++LD+ G++ + KDG + P E+ V+ ++ Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIIN 179 >UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A4P185_HAEIN Length = 130 Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 86/123 (69%), Gaps = 2/123 (1%) Query: 4 RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++ILAL C ++ AH + Q +P + +T+ GE+VL +++ W SA+L GKVR Sbjct: 3 KQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKVR 62 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSL-ESNK 121 V+ H+AGRT+AKEKN ++I+ IK++ +YQTTTI+N DDAI G+GMFV++ ++N+ Sbjct: 63 VVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKANR 122 Query: 122 KLY 124 K++ Sbjct: 123 KIH 125 >UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YEF3_9GAMM Length = 185 Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 5/179 (2%) Query: 6 ILALTCLLLPMMASAHQFETGQRV----PPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 I L C + S F G V P + I DRGEL+++K FS++ W++ GKV Sbjct: 3 IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 ++Q+ S E + ++ + L +Y TTIVN D A+ G+ FV S L+SNK Sbjct: 63 HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 + YP S ++D G +G W+L EE + + ++D++G V++ +T E+ +DL++ Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVK 180 >UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUM8_9GAMM Length = 186 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 2 TLRKILALTCLLLPMMASAHQFET-GQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 T++ + +L L L +++A T G+ +PP+ I+ GE++LD D Y+ WNS V K Sbjct: 3 TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 V V+Q+I SA + + ++ P + TT+++ D A+ G+ V S +E N Sbjct: 63 VHVVQYIPATMSASKMYRPFTDYLEENYDP-SHFHVTTVIDLDAALWGTSGLVSSEVEKN 121 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWA 162 K+ YP S ++D G +G W L + S + ++D+ G V +A Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFA 163 >UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM Length = 181 Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%) Query: 7 LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63 + L LP A A+ G+ +PP+ IT+ G+++LD D +S W+ KV+V Sbjct: 1 MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60 Query: 64 LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123 LQ++AG + + E ++ +L DRY T +VN + FVRS++ +++ Sbjct: 61 LQYVAGTRKGGDLYDPMTERMRR-ELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119 Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183 + + ++D G+ W L ++ +A VV+D+ G V GA + + ++ +L+ L+ Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178 >UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2B2_NITSB Length = 173 Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 94/185 (50%), Gaps = 20/185 (10%) Query: 3 LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQ---FSYKTWNSAQLVG 59 ++K+ L+ + +MA E G T +VL+KD+ +++A + G Sbjct: 1 MKKVFMLSIIACFLMA----LEIG--------TIPKRVVLEKDKGGTIDGSPFDTASMKG 48 Query: 60 KVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDA-IPGSGMFVRSSLE 118 KV ++ I ++ N E +K+ +RY + I+N IP + + L+ Sbjct: 49 KVYLV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINMAATWIPN--FLLNAILK 104 Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178 + +K YP++ ++ D+ V + AWQL + V++ D++GRVQ+ G L+ +E ++ + + Sbjct: 105 AKQKKYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHI 164 Query: 179 LQKLL 183 L++L+ Sbjct: 165 LEELI 169 >UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR Length = 79 Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 43/51 (84%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKT 51 MTLR ILA + LLLP++A+AH F GQRV P+G+ DRGEL+LDKD+FSYKT Sbjct: 1 MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKT 51 >UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QB01_SULNB Length = 170 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 95/182 (52%), Gaps = 13/182 (7%) Query: 3 LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++KI+ L CLL + S+ E G+ P + ++ +D W+S+ L GKV Sbjct: 1 MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGASGGKVDG-----TAWSSSMLKGKVH 52 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDA-IPGSGMFVRSSLESNK 121 +L ++ ++ N L +A+K +Y + ++N +P + + S L++ + Sbjct: 53 ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINLAATWLPN--VILESKLKAKQ 108 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 K +P + ++ D V L W L +++S +++ DK G++ + K G L+ +E++ V+ L++K Sbjct: 109 KEFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEK 168 Query: 182 LL 183 L Sbjct: 169 NL 170 >UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GVB8_SORC5 Length = 193 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 11/116 (9%) Query: 73 AKEKNATLIEAIKSAKLPH-DRYQ------TTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125 +K +N L +A+ AKL DRY+ V++ D P G + E +KK+ Sbjct: 78 SKTQNQALKDAL--AKLTKGDRYRRGIAVAAIADVSSYDFWPARGFVKDAIREESKKV-- 133 Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 D +G A++L S VVV+ K+G V +A +GAL PE +V++LL+K Sbjct: 134 GGTIYCDWDGSFRAAYKLRRGVSNVVVVGKNGHVLFAAEGALKPESQSRVLELLRK 189 >UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus RepID=SCRR_VIBAL Length = 94 Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 32/42 (76%) Query: 140 AWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 A L EESSA++V DK G+V + K+GAL +E+ +V++L+++ Sbjct: 51 AKDLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQ 92 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot... 253 2e-66 UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya... 240 1e-62 UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=... 236 2e-61 UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure... 224 8e-58 UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot... 224 1e-57 UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib... 224 1e-57 UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel... 221 1e-56 UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ... 201 7e-51 UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ... 194 2e-48 UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari... 186 4e-46 UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ... 172 5e-42 UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp.... 155 7e-37 UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph... 153 2e-36 UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell... 47 3e-04 Sequences not found previously or not previously below threshold: UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi... 56 7e-07 UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistip... 52 7e-06 UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly... 50 3e-05 UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmat... 44 0.002 UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococ... 43 0.005 UniRef50_Q1N0M7 Thiol:disulfide interchange protein DsbE, putati... 41 0.020 >UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria RepID=YTFJ_ECOLI Length = 184 Score = 253 bits (645), Expect = 2e-66, Method: Composition-based stats. Identities = 184/184 (100%), Positives = 184/184 (100%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK Sbjct: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN Sbjct: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 Query: 181 KLLK 184 KLLK Sbjct: 181 KLLK 184 >UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703 RepID=C6CAS8_DICDC Length = 201 Score = 240 bits (613), Expect = 1e-62, Method: Composition-based stats. Identities = 91/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%) Query: 1 MTLRKILALTCLL--LPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58 MT R L +L P AH + +P + ++D GEL + Y +W+SAQLV Sbjct: 1 MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60 Query: 59 GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118 GKVR++QHIAGR SA+ N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR +E Sbjct: 61 GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120 Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178 + K YPW+QF++D+ G AWQL +S+AV+VLDK+GR+++ KDG+L +EVQQV++L Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180 Query: 179 LQKLL 183 LQ LL Sbjct: 181 LQVLL 185 >UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ Length = 183 Score = 236 bits (603), Expect = 2e-61, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 121/183 (66%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 M + ++AL P +A AH G VP +G+ GE+VL + +Y+ W SA L+GK Sbjct: 1 MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+ FV+SS + + Sbjct: 61 VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 KK +PWS ++D G+ AWQL ESSA++V DK G V + K+GAL ++Q V+ L+Q Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180 Query: 181 KLL 183 + L Sbjct: 181 QNL 183 >UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae RepID=Y045_HAEIN Length = 184 Score = 224 bits (572), Expect = 8e-58, Method: Composition-based stats. Identities = 74/182 (40%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 4 RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++ILAL C ++ AH + Q +P + +++ GE+VL ++ W SA+L GKVR Sbjct: 3 KQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKVR 62 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122 V+ H+AGRT+AKE N ++I+ IK++ +YQTTTI+N DDAI G+GMFV++ + K+ Sbjct: 63 VVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGKQ 122 Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182 P SQ ++D AW L+ + SA++VLDK G+V++ K+G L+ ++Q V+ L+ L Sbjct: 123 ENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNGL 182 Query: 183 LK 184 K Sbjct: 183 TK 184 >UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria RepID=C9PS15_9PAST Length = 191 Score = 224 bits (571), Expect = 1e-57, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 112/179 (62%) Query: 6 ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65 +L L + AH + + P+ + + GEL + D SYK W+S QLVGKVR++ Sbjct: 13 VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72 Query: 66 HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125 H AGR K++N TLI AIK+A+ +YQTTTI+N DDA G+G FV+S E KK P Sbjct: 73 HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132 Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184 SQ ++D G AWQL E+ + V+VLDK G+V++ +GAL+ +VQ+V+ L+ +L K Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191 >UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales RepID=Q5E822_VIBF1 Length = 183 Score = 224 bits (571), Expect = 1e-57, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 115/183 (62%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 M K+L L LLP ++ AH + VP + I GE+ +Y+ WN+ QL GK Sbjct: 1 MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRVLQ IAGR+SAK NA L+ AI K P YQTTTI+N DD+I G+G FV+SS E + Sbjct: 61 VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 K+ + WS ++D +G AW L ESSA++V DK+G++ + K+G L+ +E++QV+ L+ Sbjct: 121 KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH 180 Query: 181 KLL 183 L Sbjct: 181 TQL 183 >UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FG85_9GAMM Length = 182 Score = 221 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 3 LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 ++KIL + L L +A +H G+ +P + ITD+G + L + F Y+ W SA+L KV Sbjct: 1 MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 ++QHIAGRTSAKE N +I+A+ +A P ++Y T T+VN D++I G+G V S ++SNK Sbjct: 61 ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 + +P + F++DS G W L E+SSA+++LD+ G++ + KDG + P E+ V+ ++ Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIINA 180 Query: 182 LL 183 + Sbjct: 181 NI 182 >UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YEF3_9GAMM Length = 185 Score = 201 bits (512), Expect = 7e-51, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 5/179 (2%) Query: 6 ILALTCLLLPMMASAHQFETGQ----RVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 I L C + S F G +P + I DRGEL+++K FS++ W++ GKV Sbjct: 3 IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 ++Q+ S E + ++ + L +Y TTIVN D A+ G+ FV S L+SNK Sbjct: 63 HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 + YP S ++D G +G W+L EE + + ++D++G V++ +T E+ +DL++ Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVK 180 >UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUM8_9GAMM Length = 186 Score = 194 bits (492), Expect = 2e-48, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 2/183 (1%) Query: 2 TLRKILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 T++ + +L L L +++A G+ +PP+ I+ GE++LD D Y+ WNS V K Sbjct: 3 TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 V V+Q+I SA + + ++ + TT+++ D A+ G+ V S +E N Sbjct: 63 VHVVQYIPATMSASKMYRPFTDYLEE-NYDPSHFHVTTVIDLDAALWGTSGLVSSEVEKN 121 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 K+ YP S ++D G +G W L + S + ++D+ G V +A + E + ++ Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFAIRHKMDATEQRDAEEVFS 181 Query: 181 KLL 183 L+ Sbjct: 182 TLV 184 >UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM Length = 181 Score = 186 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%) Query: 7 LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63 + L LP A A+ G+ +PP+ IT+ G+++LD D +S W+ KV+V Sbjct: 1 MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60 Query: 64 LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123 LQ++AG + + E ++ +L DRY T +VN + FVRS++ +++ Sbjct: 61 LQYVAGTRKGGDLYDPMTERMR-RELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119 Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183 + + ++D G+ W L ++ +A VV+D+ G V GA + + ++ +L+ L+ Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178 >UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2B2_NITSB Length = 173 Score = 172 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 92/184 (50%), Gaps = 18/184 (9%) Query: 3 LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQ---FSYKTWNSAQLVG 59 ++K+ L+ + +MA E G T +VL+KD+ +++A + G Sbjct: 1 MKKVFMLSIIACFLMA----LEIG--------TIPKRVVLEKDKGGTIDGSPFDTASMKG 48 Query: 60 KVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLES 119 KV ++ I ++ N E +K+ +RY + I+N + + L++ Sbjct: 49 KVYLV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINMAAT-WIPNFLLNAILKA 105 Query: 120 NKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLL 179 +K YP++ ++ D+ V + AWQL + V++ D++GRVQ+ G L+ +E ++ + +L Sbjct: 106 KQKKYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHIL 165 Query: 180 QKLL 183 ++L+ Sbjct: 166 EELI 169 >UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QB01_SULNB Length = 170 Score = 155 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 11/181 (6%) Query: 3 LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++KI+ L CLL + S+ E G+ P + ++ + W+S+ L GKV Sbjct: 1 MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGAS-----GGKVDGTAWSSSMLKGKVH 52 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122 +L ++ ++ N L +A+K +Y + ++N + + S L++ +K Sbjct: 53 ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINLAAT-WLPNVILESKLKAKQK 109 Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182 +P + ++ D V L W L +++S +++ DK G++ + K G L+ +E++ V+ L++K Sbjct: 110 EFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEKN 169 Query: 183 L 183 L Sbjct: 170 L 170 >UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A4P185_HAEIN Length = 130 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 52/121 (42%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Query: 4 RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++ILAL C ++ AH + Q +P + +T+ GE+VL +++ W SA+L GKVR Sbjct: 3 KQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKVR 62 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122 V+ H+AGRT+AKEKN ++I+ IK++ +YQTTTI+N DDAI G+GMFV++ + + Sbjct: 63 VVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKANR 122 Query: 123 L 123 Sbjct: 123 K 123 >UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GVB8_SORC5 Length = 193 Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 45 DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTD 103 + + L GK ++ + +K +N L +A+ K K R D Sbjct: 52 EDADGRALQLKALQGKPILI--VYEDKDSKTQNQALKDALAKLTKGDRYRRGIAVAAIAD 109 Query: 104 DAI---PGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQ 160 + + FV+ ++ K + + D +G A++L S VVV+ K+G V Sbjct: 110 VSSYDFWPARGFVKDAIREESKKVGGTIYC-DWDGSFRAAYKLRRGVSNVVVVGKNGHVL 168 Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184 +A +GAL PE +V++LL+K ++ Sbjct: 169 FAAEGALKPESQSRVLELLRKEVE 192 >UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXT5_9BACT Length = 173 Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 11/154 (7%) Query: 31 PIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAK-L 89 P ++D L L+ D W L ++ +I ++N ++ + Sbjct: 26 PRKVSDVTLLDLNGDPTQLPYWGEKNL-----MIFYI--DPDHHKQNEDFTTDMEENHRV 78 Query: 90 PHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESS- 148 + ++N DA R+ + + D N AWQL + ++ Sbjct: 79 EGENLFGFGVMNLKDAPMIPNGMARNMARKRTASNG-ATVLADQNNTLRDAWQLGDCNNM 137 Query: 149 -AVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 ++++ K+G + + + G L+ + ++ ++QK Sbjct: 138 FVLLLVSKEGDLVFMRKGPLSDADKKEFYQVVQK 171 >UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus RepID=SCRR_VIBAL Length = 94 Score = 50.4 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 32/42 (76%) Query: 142 QLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183 L EESSA++V DK G+V + K+GAL +E+ +V++L+++ + Sbjct: 53 DLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI 94 >UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR Length = 79 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 35/51 (68%), Positives = 43/51 (84%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKT 51 MTLR ILA + LLLP++A+AH F GQRV P+G+ DRGEL+LDKD+FSYKT Sbjct: 1 MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKT 51 >UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09AT1_STIAU Length = 156 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 59 GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQT---TTIVNTDDAIPGSG-MFVR 114 GK +L + + NA L E + + + N + Sbjct: 20 GKPVILFY--EDKDSVNLNAKLKERLFELARERGLKDSAWVIAVANLEKFNFFPARQIAL 77 Query: 115 SSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQ 174 S ++ +K + + W+L ++S V++LD +G + + G + ++++ Sbjct: 78 SYVKDEEKKAGVPILVDLEGTLGAEPWKLPMKTSTVMLLDAEGILLYRYSGRMAEKDMEL 137 Query: 175 VMDLLQKLL 183 + LL +L+ Sbjct: 138 FIALLARLV 146 >UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DDW9_MYXXD Length = 209 Score = 42.7 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 11/144 (7%) Query: 44 KDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQ---TTTIV 100 + W GK +L + + + N+TL + + + + Sbjct: 59 GKEVRLSKWR-----GKPVILFY--EDKDSTKLNSTLKKELFARGQERGILDAAWVLAVA 111 Query: 101 NTDDAIPGSG-MFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRV 159 N + S + +K + + W+L ++S +V+LD +G + Sbjct: 112 NLQNFDFFPARQIALSFVRDEEKKVGVPILVDMDGALGKAPWKLPLKTSNIVLLDAEGAL 171 Query: 160 QWAKDGALTPEEVQQVMDLLQKLL 183 + G + P+E+ +L +L+ Sbjct: 172 VYRHSGRMKPDELMTFFAVLSRLV 195 >UniRef50_Q1N0M7 Thiol:disulfide interchange protein DsbE, putative n=1 Tax=Bermanella marisrubri RepID=Q1N0M7_9GAMM Length = 166 Score = 40.8 bits (94), Expect = 0.020, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 80/185 (43%), Gaps = 24/185 (12%) Query: 2 TLRKILALTCLLLPMMASAHQFET--GQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVG 59 +++ +L++ L + +M SA GQ P + L+ + + S K + G Sbjct: 3 SIKTVLSMLLLSVGLMFSAASIAIEKGQTAPNFRLP----LLDSQKKVSLKQYR-----G 53 Query: 60 KVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLES 119 KV + A ++ L+ +++ ++ ++ +N D+ + + F+ Sbjct: 54 KVVYVDFWASWCGPCRQSLPLLTKLRA-EMKKQPFEVLA-INLDEEVDAAKGFL------ 105 Query: 120 NKKLYPWSQFIV-DSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178 K YP + ++ D G +QL ++ +V DK GR++ G P+++ ++ Sbjct: 106 --KQYPVNYPVLLDPEGNVAAQYQLPGMPTSFIV-DKRGRIKHVHVG-FKPQDIDKIRQQ 161 Query: 179 LQKLL 183 ++ LL Sbjct: 162 VKSLL 166 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot... 231 8e-60 UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=... 224 1e-57 UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya... 221 8e-57 UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib... 214 1e-54 UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure... 213 2e-54 UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot... 213 2e-54 UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel... 206 2e-52 UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ... 200 1e-50 UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ... 188 6e-47 UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari... 178 8e-44 UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ... 162 5e-39 UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp.... 151 1e-35 UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph... 148 7e-35 UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistip... 132 5e-30 UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi... 119 5e-26 UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmat... 104 1e-21 UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly... 52 6e-06 UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell... 45 8e-04 Sequences not found previously or not previously below threshold: UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococ... 90 3e-17 UniRef50_A9WI14 Alkyl hydroperoxide reductase/ Thiol specific an... 44 0.003 UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T ... 44 0.004 UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria... 43 0.004 UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN 43 0.005 UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei sub... 42 0.009 UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospi... 41 0.019 UniRef50_Q020C0 Putative uncharacterized protein n=1 Tax=Candida... 40 0.026 >UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria RepID=YTFJ_ECOLI Length = 184 Score = 231 bits (589), Expect = 8e-60, Method: Composition-based stats. Identities = 184/184 (100%), Positives = 184/184 (100%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK Sbjct: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN Sbjct: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 Query: 181 KLLK 184 KLLK Sbjct: 181 KLLK 184 >UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ Length = 183 Score = 224 bits (570), Expect = 1e-57, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 121/183 (66%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 M + ++AL P +A AH G VP +G+ GE+VL + +Y+ W SA L+GK Sbjct: 1 MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+ FV+SS + + Sbjct: 61 VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 KK +PWS ++D G+ AWQL ESSA++V DK G V + K+GAL ++Q V+ L+Q Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180 Query: 181 KLL 183 + L Sbjct: 181 QNL 183 >UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703 RepID=C6CAS8_DICDC Length = 201 Score = 221 bits (563), Expect = 8e-57, Method: Composition-based stats. Identities = 91/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%) Query: 1 MTLRKILALTCLL--LPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58 MT R L +L P AH + +P + ++D GEL + Y +W+SAQLV Sbjct: 1 MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60 Query: 59 GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118 GKVR++QHIAGR SA+ N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR +E Sbjct: 61 GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120 Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178 + K YPW+QF++D+ G AWQL +S+AV+VLDK+GR+++ KDG+L +EVQQV++L Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180 Query: 179 LQKLL 183 LQ LL Sbjct: 181 LQVLL 185 >UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales RepID=Q5E822_VIBF1 Length = 183 Score = 214 bits (544), Expect = 1e-54, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 115/183 (62%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 M K+L L LLP ++ AH + VP + I GE+ +Y+ WN+ QL GK Sbjct: 1 MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK 60 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 VRVLQ IAGR+SAK NA L+ AI K P YQTTTI+N DD+I G+G FV+SS E + Sbjct: 61 VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES 120 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 K+ + WS ++D +G AW L ESSA++V DK+G++ + K+G L+ +E++QV+ L+ Sbjct: 121 KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH 180 Query: 181 KLL 183 L Sbjct: 181 TQL 183 >UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae RepID=Y045_HAEIN Length = 184 Score = 213 bits (542), Expect = 2e-54, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 118/183 (64%), Gaps = 1/183 (0%) Query: 3 LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 ++ILAL C ++ AH + Q +P + +++ GE+VL ++ W SA+L GKV Sbjct: 2 KKQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKV 61 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 RV+ H+AGRT+AKE N ++I+ IK++ +YQTTTI+N DDAI G+GMFV++ + K Sbjct: 62 RVVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGK 121 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 + P SQ ++D AW L+ + SA++VLDK G+V++ K+G L+ ++Q V+ L+ Sbjct: 122 QENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNG 181 Query: 182 LLK 184 L K Sbjct: 182 LTK 184 >UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria RepID=C9PS15_9PAST Length = 191 Score = 213 bits (542), Expect = 2e-54, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 112/179 (62%) Query: 6 ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65 +L L + AH + + P+ + + GEL + D SYK W+S QLVGKVR++ Sbjct: 13 VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72 Query: 66 HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125 H AGR K++N TLI AIK+A+ +YQTTTI+N DDA G+G FV+S E KK P Sbjct: 73 HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132 Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184 SQ ++D G AWQL E+ + V+VLDK G+V++ +GAL+ +VQ+V+ L+ +L K Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191 >UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FG85_9GAMM Length = 182 Score = 206 bits (525), Expect = 2e-52, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 3 LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 ++KIL + L L +A +H G+ +P + ITD+G + L + F Y+ W SA+L KV Sbjct: 1 MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 ++QHIAGRTSAKE N +I+A+ +A P ++Y T T+VN D++I G+G V S ++SNK Sbjct: 61 ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 + +P + F++DS G W L E+SSA+++LD+ G++ + KDG + P E+ V+ ++ Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIINA 180 Query: 182 LL 183 + Sbjct: 181 NI 182 >UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUM8_9GAMM Length = 186 Score = 200 bits (509), Expect = 1e-50, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 2/183 (1%) Query: 2 TLRKILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60 T++ + +L L L +++A G+ +PP+ I+ GE++LD D Y+ WNS V K Sbjct: 3 TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62 Query: 61 VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120 V V+Q+I SA + + ++ + TT+++ D A+ G+ V S +E N Sbjct: 63 VHVVQYIPATMSASKMYRPFTDYLEE-NYDPSHFHVTTVIDLDAALWGTSGLVSSEVEKN 121 Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180 K+ YP S ++D G +G W L + S + ++D+ G V +A + E + ++ Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFAIRHKMDATEQRDAEEVFS 181 Query: 181 KLL 183 L+ Sbjct: 182 TLV 184 >UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YEF3_9GAMM Length = 185 Score = 188 bits (478), Expect = 6e-47, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%) Query: 6 ILALTCLLLPMMASAHQFETGQ----RVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 I L C + S F G +P + I DRGEL+++K FS++ W++ GKV Sbjct: 3 IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 ++Q+ S E + ++ + L +Y TTIVN D A+ G+ FV S L+SNK Sbjct: 63 HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 + YP S ++D G +G W+L EE + + ++D++G V++ +T E+ +DL++ Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVKA 181 Query: 182 LLK 184 + Sbjct: 182 RVD 184 >UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM Length = 181 Score = 178 bits (451), Expect = 8e-44, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%) Query: 7 LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63 + L LP A A+ G+ +PP+ IT+ G+++LD D +S W+ KV+V Sbjct: 1 MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60 Query: 64 LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123 LQ++AG + + E ++ +L DRY T +VN + FVRS++ +++ Sbjct: 61 LQYVAGTRKGGDLYDPMTERMR-RELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119 Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183 + + ++D G+ W L ++ +A VV+D+ G V GA + + ++ +L+ L+ Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178 >UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2B2_NITSB Length = 173 Score = 162 bits (410), Expect = 5e-39, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 87/181 (48%), Gaps = 12/181 (6%) Query: 3 LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++K+ L+ + +MA E G + + +++A + GKV Sbjct: 1 MKKVFMLSIIACFLMA----LEIGTIPKRVVLEKD-----KGGTIDGSPFDTASMKGKVY 51 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122 ++ I ++ N E +K+ +RY + I+N A + + L++ +K Sbjct: 52 LV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINM-AATWIPNFLLNAILKAKQK 108 Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182 YP++ ++ D+ V + AWQL + V++ D++GRVQ+ G L+ +E ++ + +L++L Sbjct: 109 KYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHILEEL 168 Query: 183 L 183 + Sbjct: 169 I 169 >UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QB01_SULNB Length = 170 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 93/181 (51%), Gaps = 11/181 (6%) Query: 3 LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 ++KI+ L CLL + S+ E G+ P + ++ + W+S+ L GKV Sbjct: 1 MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGAS-----GGKVDGTAWSSSMLKGKVH 52 Query: 63 VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122 +L ++ ++ N L +A+K +Y + ++N A + + S L++ +K Sbjct: 53 ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINL-AATWLPNVILESKLKAKQK 109 Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182 +P + ++ D V L W L +++S +++ DK G++ + K G L+ +E++ V+ L++K Sbjct: 110 EFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEKN 169 Query: 183 L 183 L Sbjct: 170 L 170 >UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A4P185_HAEIN Length = 130 Score = 148 bits (374), Expect = 7e-35, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%) Query: 3 LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 ++ILAL C ++ AH + Q +P + +T+ GE+VL +++ W SA+L GKV Sbjct: 2 KKQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKV 61 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 RV+ H+AGRT+AKEKN ++I+ IK++ +YQTTTI+N DDAI G+GMFV++ + Sbjct: 62 RVVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKAN 121 Query: 122 KLYPWSQFI 130 + ++ Sbjct: 122 RKIHIAKLC 130 >UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXT5_9BACT Length = 173 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 11/154 (7%) Query: 31 PIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAK-L 89 P ++D L L+ D W L ++ +I ++N ++ + Sbjct: 26 PRKVSDVTLLDLNGDPTQLPYWGEKNL-----MIFYI--DPDHHKQNEDFTTDMEENHRV 78 Query: 90 PHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESS- 148 + ++N DA R+ + + D N AWQL + ++ Sbjct: 79 EGENLFGFGVMNLKDAPMIPNGMARNMARKRTASNG-ATVLADQNNTLRDAWQLGDCNNM 137 Query: 149 -AVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181 ++++ K+G + + + G L+ + ++ ++QK Sbjct: 138 FVLLLVSKEGDLVFMRKGPLSDADKKEFYQVVQK 171 >UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GVB8_SORC5 Length = 193 Score = 119 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 45 DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTD 103 + + L GK ++ + +K +N L +A+ K K R D Sbjct: 52 EDADGRALQLKALQGKPILI--VYEDKDSKTQNQALKDALAKLTKGDRYRRGIAVAAIAD 109 Query: 104 DAI---PGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQ 160 + + FV+ ++ K + + D +G A++L S VVV+ K+G V Sbjct: 110 VSSYDFWPARGFVKDAIREESKKVGGTIYC-DWDGSFRAAYKLRRGVSNVVVVGKNGHVL 168 Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184 +A +GAL PE +V++LL+K ++ Sbjct: 169 FAAEGALKPESQSRVLELLRKEVE 192 >UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09AT1_STIAU Length = 156 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 11/145 (7%) Query: 43 DKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQT---TTI 99 + W GK +L + + NA L E + + + Sbjct: 9 EGTPVQLSRWR-----GKPVILFY--EDKDSVNLNAKLKERLFELARERGLKDSAWVIAV 61 Query: 100 VNTDDAIPGS-GMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGR 158 N + S ++ +K + + W+L ++S V++LD +G Sbjct: 62 ANLEKFNFFPARQIALSYVKDEEKKAGVPILVDLEGTLGAEPWKLPMKTSTVMLLDAEGI 121 Query: 159 VQWAKDGALTPEEVQQVMDLLQKLL 183 + + G + ++++ + LL +L+ Sbjct: 122 LLYRYSGRMAEKDMELFIALLARLV 146 >UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DDW9_MYXXD Length = 209 Score = 90.2 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 11/181 (6%) Query: 7 LALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQH 66 L + + S P D + W GK +L + Sbjct: 22 LMKAWIAGALSISLAAGSALGAAPAPEPVDATLRTSAGKEVRLSKWR-----GKPVILFY 76 Query: 67 IAGRTSAKEKNATLIEAIKSAKLPHDRYQTT---TIVNTDDAIPGS-GMFVRSSLESNKK 122 + + N+TL + + + + N + S + +K Sbjct: 77 --EDKDSTKLNSTLKKELFARGQERGILDAAWVLAVANLQNFDFFPARQIALSFVRDEEK 134 Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182 + + W+L ++S +V+LD +G + + G + P+E+ +L +L Sbjct: 135 KVGVPILVDMDGALGKAPWKLPLKTSNIVLLDAEGALVYRHSGRMKPDELMTFFAVLSRL 194 Query: 183 L 183 + Sbjct: 195 V 195 >UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus RepID=SCRR_VIBAL Length = 94 Score = 52.4 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 32/42 (76%) Query: 142 QLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183 L EESSA++V DK G+V + K+GAL +E+ +V++L+++ + Sbjct: 53 DLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI 94 >UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR Length = 79 Score = 45.5 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 35/51 (68%), Positives = 43/51 (84%) Query: 1 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKT 51 MTLR ILA + LLLP++A+AH F GQRV P+G+ DRGEL+LDKD+FSYKT Sbjct: 1 MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKT 51 >UniRef50_A9WI14 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=3 Tax=Chloroflexus RepID=A9WI14_CHLAA Length = 181 Score = 44.0 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 61/158 (38%), Gaps = 11/158 (6%) Query: 30 PPIGITDRGELV--LDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSA 87 P + + G + + Q +T + ++L G+V ++ A ++E + Sbjct: 32 PTVPVPQPGFVAPAIVLPQLDGQTLSLSELQGQVVIVNFWASWCGPCRAEMPMLEQL--- 88 Query: 88 KLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEES 147 +R + T++ + + + V + +P ++D +G + + Sbjct: 89 -YQAERRRGLTVLAVNSTVQDNPADVSNMQRDFGLSFP---IVLDYDGSVGNRYGVRMLP 144 Query: 148 SAVVVLDKDGRVQWAKDG-ALTPEEVQQVMDLLQKLLK 184 + ++ D+ G V+ G L+ ++ V++ L + Sbjct: 145 TTFII-DRKGVVRRVLFGGPLSEANLRNVIEPLLAETE 181 >UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZMJ8_THASP Length = 165 Score = 43.6 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 11/136 (8%) Query: 48 SYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIP 107 +++ +A L GKV ++ A + K ++A + K Y+T + D Sbjct: 37 QGQSFRTADLRGKVVLVNFWATTCTTCIKEMPALKATQE-KFEARGYRTVAVAMDYDPPA 95 Query: 108 GSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGAL 167 FV S P+ F++D +G ++ + VLDK GR+ G Sbjct: 96 QVAAFVERSA------LPF-TFVLDRDGSIARGFEGVRLTPTSYVLDKHGRIVQKILGEP 148 Query: 168 TPEEVQQVMDLLQKLL 183 + ++ LL++LL Sbjct: 149 ---DFDKLHGLLEQLL 161 >UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria RepID=A9I0L2_BORPD Length = 164 Score = 43.2 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 20/176 (11%) Query: 3 LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62 + IL L ++ + + + P + T KT++ L GKV Sbjct: 2 KKLILTLAVVVAAGIGAWFVWRPAPPAPDVAFT----------TIEGKTFSMHDLRGKVV 51 Query: 63 VLQHIAGRTSAKEKNATLIEAIKS-AKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 +++ A TS + AI + + Y+T + +V + E+ K Sbjct: 52 LVKFWA--TSCVTCVKQMPGAIDTYNEYAPKGYETVAV----AMSYDPPNYVLNFAETRK 105 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177 +P + +D G ++ + + ++DK GR+ G P E ++ Sbjct: 106 LPFPVA---LDVKGELARSFGDVKLTPTAFLIDKQGRIIKRYLGEYDPAEFHAAIE 158 >UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN Length = 167 Score = 42.8 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 22/176 (12%) Query: 3 LRKILALTCLLLPMMA-SAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61 L K+L ++ ++ ++ + GQ P I L ++ S W GK Sbjct: 9 LAKMLGISAVVFFSVSCKEESAQIGQPAPEIAA-----FDLQGNKASLSDW-----QGKT 58 Query: 62 RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121 ++ + A A L + A+ ++ Q +N D + V K Sbjct: 59 VLINFWSETCGA--CIAELRTLQQWAEKYPNQVQLIA-MNIDGEKADTQAIV------TK 109 Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177 + F D + +QL + V+D +G+V + +G ++ ++Q++ Sbjct: 110 RQLTLPVF-KDQMKITAERYQL-IGTPTSFVIDPNGKVIYKFEGLISENDLQRLFQ 163 >UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXB8_SYNWW Length = 763 Score = 42.0 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 10/141 (7%) Query: 52 WNSAQLVGK-VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSG 110 W+ + +GK + + I TS + + + + L + + +++ D + Sbjct: 56 WSREEALGKHLYEVFRIIDNTSKQPLENPF-DNVFTRGLSQGLLRNSALLDRDGETRFAS 114 Query: 111 MFVRSSLESNKKLYPWSQFIVDSNGVALG-------AWQLDEESSAVVVLDKDGRVQWAK 163 ++ N+K D + + +W L S+A+++ D G VQ+ Sbjct: 115 ACASPIIDKNQKRAGMVVVFRDIDRIKKNEDEIRCLSWVLQLSSNAIIIFDIQGIVQFIN 174 Query: 164 DGALTPEEVQQVMDLLQKLLK 184 T + +++ + L+ Sbjct: 175 S-RFTQLTGYEAYEVVNRNLR 194 >UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4I8_9BACT Length = 181 Score = 40.9 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 28/189 (14%) Query: 3 LRKILALTCLLLPMMASAHQ-----FETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQL 57 R ++A+ +L+ + A H F+ G+ P +T + D S QL Sbjct: 2 KRVLIAVAIVLVHLWAVHHVVAAGFFKVGEPAPAFSLT-----SVTGDAVSL-----EQL 51 Query: 58 VGKVRVL--QHIAGRTSAKEKN-ATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVR 114 GKV VL HI + N + EA+ + + ++ D+ G G F+ Sbjct: 52 KGKVVVLGLFHICDPCMTQGTNLQKVHEAMAGKNV-----AVVGVNSSGDSKRGVGEFLS 106 Query: 115 SSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQ 174 + YP +++D N + + V V+D+ G ++W + G + + Sbjct: 107 AFPVKVT--YP---YLLDPNKTTDKLYGGGKFIPNVYVIDQRGVIRWQRVGNMELAGAEV 161 Query: 175 VMDLLQKLL 183 ++ ++KLL Sbjct: 162 IIQEVEKLL 170 >UniRef50_Q020C0 Putative uncharacterized protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020C0_SOLUE Length = 171 Score = 40.5 bits (93), Expect = 0.026, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 91 HDRYQTTTIVNTDDAIPGSGMFVRSSLESN--KKLYPWSQFIVDSNGVALGAWQL-DEES 147 DR+ +I +D V+ ++S K+LY + A + Sbjct: 78 RDRFPVWSIAVLEDVPGLVRGMVKHGIKSGTPKELYDHFLLVYHGEKQLKQAAGFDKPDD 137 Query: 148 SAVVVLDKDGRVQWAKDGALTPEEVQQV 175 + ++ +DK G + W G +T V+QV Sbjct: 138 AYLLAIDKGGVITWRYHGPVTDAAVEQV 165 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.129 0.307 Lambda K H 0.267 0.0395 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 781,673,081 Number of Sequences: 3077464 Number of extensions: 24045569 Number of successful extensions: 81103 Number of sequences better than 1.0e-01: 26 Number of HSP's better than 0.1 without gapping: 52 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 81019 Number of HSP's gapped (non-prelim): 63 length of query: 184 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 63 effective length of database: 668,023,212 effective search space: 42085462356 effective search space used: 42085462356 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 89 (38.9 bits)