HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/a9ce69a6b497e139/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/a9ce69a6b497e139/query.hhm DATE Sat Jan 7 23:04:01 2012 LENG 118 match states, 118 columns in multiple alignment FILT 53 out of 55 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4432 1.3104 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECC CCCHHHHHHHHHHHCCCC >ss_conf 9404553054547787664154234555207438899745669999999853287775149758998510289974099999999971998848965027 789999999997303889 >Consensus xxxxxxxxxxxixxxxxxxxxxtlxxxxxxxxxclxxxxxxxixxxxxelxxxtxxxxxNkPVIgVInKiDLaxxexierxxxxLkxaGxxkIfxVSaxT gEGIeeLlxxLxxeexxc >batch____ MAGVRQHGWRAIPAVCSEYGADTLPDRYRSDGRCLLFWQQAGISALKQELEVKTPYRAMNHPVIGVVTKADLASMEQISLVKSWLREAGAHNVLVTSAVN NNGVTELFALLHTEEGCC >UniRef50_B5YEQ1(253-325:435) GTPase obg n=16 Tax=Bacteria RepID=OBG_DICT6 E=2e-06 s/c=0.74 id=29% cov=55% ---------------------------------------------LKKELYLYSP-KLLEKPRIIAINKIDLPEaQERLPEIEKWLKNEGVPYVF-ISAK EGINIDKLLELM------- >UniRef50_Q4G2A5(114-162:194) Small GTP-binding protein, putative n=1 Tax=Trichomonas vaginalis RepID=Q4G2A5_TRIVA E=0.0001 s/c=0.97 id=23% cov=25% ----------------------------------------------------------------------------------NYTKDIGAIKYFEVSAKT GEGIKDIFEYL------- >UniRef50_A5TSS1(91-144:145) Ethanolamine utilization protein EutP n=7 Tax=Fusobacterium RepID=A5TSS1_FUSNP E=7e-09 s/c=1.14 id=34% cov=45% --------------------------------------------------------------VIGVITKIDL-ENANVERSRKFLIEAGATEVFTIGLND EEGLEAIKKRLVTNE--- >UniRef50_A5ZM04(90-144:176) Putative uncharacterized protein n=5 Tax=Bacteria RepID=A5ZM04_9FIRM E=3e-11 s/c=1.27 id=28% cov=45% -------------------------------------------------------------PLIGIITKVD-SPYANLPMVRQWMQNMGCEHIFEVNNVT REGIPELMAYLQDD---- >UniRef50_Q58330(127-179:185) Uncharacterized protein MJ0920 n=12 Tax=Methanococcales RepID=Y920_METJA E=2e-05 s/c=0.95 id=24% cov=43% -------------------------------------------------------------PIIVVINKCDLLNDSDKEHLKNYVERRIKNTPIFVSAKT FEGIPELLDII------- >UniRef50_Q18HS5(276-370:561) GTP-binding protein n=11 Tax=Halobacteriaceae RepID=Q18HS5_HALWD E=6e-05 s/c=0.51 id=24% cov=78% ----------------------TLDSVYRADLVLLVVDASESIDAMREKLITShdTLYERNEAPIVTVLNKTDCVEEGELDRKMQSL-DALAPNPVAVSG LTGENIEQLTNRIENE---- >UniRef50_B2V2R6(434-545:605) GTP-binding protein HflX n=27 Tax=Bacteria RepID=B2V2R6_CLOBA E=0.0001 s/c=0.42 id=31% cov=60% ---------RKLPHDLVEAFKSTLEEVIFSDILCHVvdVSSETAIEQYKAVNEVLTELEAIDKETILVLNKIDKATEEQIN------------------- -------------------- >UniRef50_Q3A4Q6(121-175:303) GTP-binding protein Era n=6 Tax=Bacteria RepID=Q3A4Q6_PELCD E=0.0002 s/c=0.85 id=28% cov=45% -----------------------------------------------------------NVPVILVINKVDLIhRPELLPLIEAYTGKYAFSEIIPVSAL TGEGTEQLVSSL------- >UniRef50_P32559(330-442:526) tRNA modification GTPase MSS1, mitochondrial n=9 Tax=Saccharomycetaceae RepID=MSS1_YEAST E=0.0007 s/c=0.40 id=25% cov=91% -AGIREKSSDKIEML----GIDRAKKKSVQSDLCLFIVDPTDLSKLLPEdiLAHLSSKTFGNKRIIIVVNKSDLVSDDEMTKVLNKLQTRLGSKypILSV SCKTKEGIESLISTL------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1130 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1712 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 0 * * * * * * 1712 0 0 V 4 * * * * * * * 1381 * * * * * * * * * 699 * * 4 0 * * * * * * 1712 0 0 R 5 * * * * * * * * * * * * * * 0 * * * * * 5 0 * * * * * * 1712 0 0 Q 6 * * * 1381 * * * * * * * * * 699 * * * * * * 6 0 * * * * * * 1712 0 0 H 7 * * * * * * 1699 * 1381 1699 * * * * * * * * * * 7 0 * * * * * * 1712 0 0 G 8 * * * * * 699 * * * * * * * * * 1381 * * * * 8 0 * * * * * * 1712 0 0 W 9 * * * * * * * * * * * * * * * 1381 * * 699 * 9 0 * * * * * * 1712 0 0 R 10 * * 1871 * * * * * 2184 * * * * * 981 * * * * * 10 0 * * * * * * 2290 0 0 A 11 1263 * * * * * * * 778 * * * * * * * * * * * 11 0 * * * * * * 2290 0 0 I 12 * * * * * * * 535 * 1690 * * * * * * * * * * 12 0 * * * * * * 2290 0 0 P 13 * * * 1871 * * * * * * * * 461 * * * * * * * 13 0 * * * * * * 2290 0 0 A 14 1263 * * * * * 1690 * * * 1871 * * * * * * * * * 14 0 * * * * * * 2290 0 0 V 15 * * 1690 * * * * * * 1871 * * * * * * * 1263 * * 15 461 * 1871 * * * * 2290 0 0 C 16 * 1871 * * * * * * * 1240 * * * * 1721 * * * * * 16 0 * * * * * 0 1766 0 1000 S 17 * * * * * * * * * * * * * * * 794 * 1240 * * 17 0 * * * * * 0 1766 0 1000 E 18 * * * 521 * 1721 * * * * * * * * * * * * * * 18 0 * * * * * 0 1766 0 1000 Y 19 1240 * * * * * * * * * * * * * * * * * * 794 19 0 * * * * 0 * 1766 0 1000 G 20 * * * * 1690 535 * * * * * * * * * * * * * * 20 0 * * * * * * 2290 0 0 A 21 1263 * * * * * * 1871 1690 * * * * * * * * * * * 21 0 * * * * * * 2290 0 0 D 22 * * 535 * * * * * * * * * * * * 1690 * * * * 22 0 * * * * * * 2290 0 0 T 23 * * * * * * * * * * * * * * 1727 * 519 * * * 23 0 * * * * * * 2806 0 0 L 24 1727 * * * * * * * * 519 * * * * * * * * * * 24 0 * * * * * * 2806 0 0 P 25 * * 2162 2406 * * * * 1727 * * * 1807 * * * * * * * 25 0 * * * * * * 2806 0 0 D 26 * * 1807 2406 * * * * 1727 * * * * * * 2162 * * * * 26 0 * * * * * * 2806 0 0 R 27 * * * * * * * * 1727 * * * * * 1807 * * 1279 * * 27 0 * * * * * * 2806 0 0 Y 28 * * * * * * * 2406 * * * * * * * 1727 * * * 974 28 0 * * * * * * 2806 0 0 R 29 * * * * 2406 * 2667 * * * * * * * 1507 * * 1727 * * 29 0 * * * * * * 2806 0 0 S 30 2162 * * * * * * * * * * * * 1727 * 1075 * * * * 30 0 * * * * * * 2806 0 0 D 31 * * 888 * * * * * * * * * * * * 1727 2667 * * * 31 0 * * * * * * 2806 0 0 G 32 * * 1727 * * 1807 * 2406 * 2162 * * * * * * * * * * 32 0 * * * * * * 2806 0 0 R 33 * * * * * * * * * 1027 * * * * 1807 * * 2162 * * 33 0 * * * * * * 2806 0 0 C 34 * 365 * * * * * * * 2162 * * * * * * * * * * 34 0 * * * * * * 2806 0 0 L 35 * * * * * * 2052 * * 398 * * * * * * * * * * 35 0 * * * * * * 2624 0 0 L 36 * * * * 1871 * * * * 2123 * * * * * * * 1008 * * 36 398 2052 * 1000 1000 * * 2624 1000 0 F 37 * * * * 2123 * * 1871 * * * * * * * * * 1008 * * 37 0 * * * * * * 2624 0 0 W 38 * * 1967 * * * * * * * * * * * * 2052 * 1871 2123 * 38 0 * * * * * * 2624 0 0 Q 39 1967 * 1871 * * * * * * * * * * 2123 * 2052 * * * * 39 0 * * * * * * 2624 0 0 Q 40 * * * 2052 * * * * * * * * 1871 2123 * 1967 * * * * 40 0 * * * * * * 2624 0 0 A 41 2123 * * 1967 * * * * * * * * * * * * 958 * * * 41 0 * * * * * * 2624 0 0 G 42 2052 * 1871 * * 2123 * * * * * * * * * 1967 * * * * 42 0 * * * * * * 2624 0 0 I 43 * * * * * * * 461 * 1871 * * * * * * * * * * 43 0 * * * * * * 2624 0 0 S 44 * * 1967 2052 * * * * * * * * * * * 992 * * * * 44 0 * * * * * * 2624 0 0 A 45 1306 * * * * * * * 2281 * * * * 2352 * 2367 * * * * 45 0 * * * * * * 2833 0 0 L 46 * * * * * * * * * 1054 2395 * * * * * * 2693 * 2526 46 0 * * * * * * 3008 0 0 K 47 * * * * * * * * 1049 2540 * * * * 1536 * * * * * 47 0 * * * * * * 3008 0 0 Q 48 2526 * * 2395 * * * * 2715 * * * 2540 2667 2693 * * * * * 48 0 * * * * * * 3008 0 0 E 49 * * * 652 * * * * 2395 * * * * * * * * 2526 * * 49 272 2540 * 1000 1000 * * 3008 1000 0 L 50 * * * * * * * * * 275 * 2526 * * * * * * * * 50 0 * * * * * * 3008 0 0 E 51 2540 * * 1042 * * * 2395 * * * * * * * * * * * 2715 51 0 * * * * * * 3008 0 0 V 52 * * * * * * 2540 2693 * 2715 * * * * * * 2395 1595 * * 52 0 * * * * * * 3008 0 0 K 53 * * * * * * * * 2667 1533 * * * * * 2395 * * * 1704 53 304 2395 * 1000 1000 * * 3008 1000 0 T 54 * * * * * * * * * * * 2877 * * * 1245 1178 * * * 54 0 * * * * * * 3055 0 0 P 55 * * * 2773 * * * * * 2634 * * 899 * * 2676 * * * * 55 450 * 1899 * * * * 3055 0 0 Y 56 * * * * * * * * 2239 2356 * * * * * * * * * 754 56 0 * * * * 0 * 2672 0 1532 R 57 * * * 1794 3435 * * * 1828 * * * * * 2177 * 3103 * * * 57 0 * * * * * * 3706 0 0 A 58 1432 * * * 3398 * * 2748 * 3649 * * * * 3481 2581 * 4343 * * 58 0 * * * * * * 3925 0 0 M 59 * * * * 1880 3553 * 4312 * 1745 2730 3650 * 3966 * * * * * * 59 0 * * * * * * 4018 0 0 N 60 * * 4819 3021 * * * * * * * 704 * * 3086 4478 3946 * * * 60 73 4344 * 1000 1000 * * 4247 1000 0 H 61 3177 * * * * 4597 4542 3859 1359 * * * * * 1864 * * 3799 * * 61 0 * * * * * * 4247 0 0 P 62 * * * 4182 * * 5295 * 5486 * 4772 * 403 5541 3974 5693 * * * * 62 0 * * * * * * 4730 0 0 V 63 6058 4357 * 4729 5493 * * 2159 * 4646 * * * 4530 5551 5192 3271 1263 * * 63 0 * * * * * * 4878 0 0 I 64 * * * * * * * 545 * 4338 * * * * * * * 1916 * * 64 0 * * * * * * 4984 0 0 G 65 5594 * * * * 998 * 2832 * 3700 * * * * 4553 * 3573 2892 * * 65 0 * * * * * * 4984 0 0 V 66 3571 * * * * * * 2066 * 3892 * * * * * * * 714 * * 66 0 * * * * * * 4995 0 0 V 67 * * * * * * * 1303 * 2343 * * * * * * * 1330 * * 67 0 * * * * * * 4995 0 0 T 68 * * * * * * * * * * * 1051 * * * 4155 1116 * * * 68 0 * * * * * * 4995 0 0 K 69 * * * * * * * * 46 * * * * 5000 * * * * * * 69 0 * * * * * * 4860 0 0 A 70 3476 5009 * 5387 * * * 1449 * * 5701 * * * * 3446 3374 1829 * * 70 21 * 6136 * * * * 4860 0 0 D 71 * * 55 * * * * * * * * * * * * 4742 * * * * 71 238 4848 3091 627 1504 0 * 4854 1376 1000 L 72 5892 5050 * * * 5666 * 3618 6387 377 6030 * 5412 * * * 5001 * * * 72 71 * 4377 * * 0 * 4927 0 2402 A 73 1507 4432 * * * 4730 * 3948 5004 2610 5737 4967 5680 * * 4855 4953 2819 * 5286 73 194 2989 * 0 * 0 * 4856 2540 1453 S 74 5678 * 2353 2821 * 6129 * * 3712 * * 3877 2995 * 4950 2284 3041 * * * 74 47 4978 * 0 * * * 4860 1493 0 M 75 * * 2022 2031 * * * * * * 5945 2693 2863 4094 4279 4784 5387 * * 5034 75 99 5007 4831 0 * * * 4860 1366 0 E 76 2276 * 4274 1076 * 5067 * * 5164 * * 5114 * 3281 * 4283 * 5233 * * 76 0 * * * * * 0 4967 0 1587 Q 77 * * 2802 2365 * * * * 3393 4800 * 3924 * 2399 2842 3287 4877 * * * 77 67 5063 5999 0 * 0 * 4967 1417 1587 I 78 4929 * * * 5837 * * 1525 3737 1994 5077 * 4420 * * * 5498 2745 5133 * 78 93 4003 * 361 2176 * 0 4992 1426 1000 S 79 2883 * 2950 1749 * * * 5921 2932 * * 3792 3633 * 5486 3807 5077 6184 * * 79 0 * * * * * 0 4992 0 1000 L 80 3870 * * 2831 * * 4980 * 3186 2626 4316 5954 * 4218 1616 * 5584 * * 5611 80 0 * * * * 0 * 4856 0 1000 V 81 1710 6092 * * 5350 * * 3036 4995 3428 * * 5556 * 3881 4614 5437 2071 * 5803 81 0 * * * * * * 4856 0 0 K 82 3605 * * 1649 * * * * 2193 4951 4343 4997 * 5430 2315 5824 * 5294 * * 82 48 6318 5646 0 * * * 4856 1000 0 S 83 2926 * * 2558 * * * * 2340 4742 5433 3372 * 2858 3178 3387 * * * * 83 0 * * * * * 0 4855 0 1000 W 84 4225 * * 3629 2189 * * 2968 4332 4860 5455 4970 * 6074 4255 4300 6029 * 2917 3132 84 0 * * * * 0 * 4719 0 1000 L 85 4656 * * * * * * 5665 * 497 3724 * * * * * 4544 3491 * 5343 85 42 * 5127 * * * * 4720 0 0 R 86 5534 * * 3204 * 4987 5520 5430 1424 4022 * 4504 * 3443 3302 3284 5722 * * * 86 0 * * * * 0 * 4666 0 1000 E 87 3035 * 4621 3466 * 6185 5202 * 3214 2827 4389 2927 * 3154 4291 3558 5069 * * * 87 36 * 5328 * * * * 4707 0 0 A 88 879 * * 3846 * 5105 * 3843 5676 * 5156 * * * 3299 5505 4781 4405 * 4922 88 61 5549 5660 2807 222 * 0 4652 1000 1000 G 89 4942 * * * * 460 * 5043 4355 3268 * 4117 * * * * * * * * 89 81 * 4188 * * 0 * 4666 0 1552 A 90 1587 2852 * 4631 4058 5031 5212 3904 5065 3369 * 5534 * * * 5299 * 2942 * * 90 31 * 5555 * * 0 * 4615 0 1601 H 91 5196 * 3659 2860 * 6211 5761 6387 2652 * * 5021 3445 2599 3975 3275 3790 * * 5267 91 34 * 5411 * * 0 * 4685 0 1000 N 92 * * 5556 1880 * 6277 4724 * 1566 * * 3703 5310 3986 5874 * 3426 * * 4526 92 45 5035 * 1000 1000 0 * 4619 1000 1000 V 93 * * * * * * * 808 * 5079 * * 2810 * * 5603 5411 2326 * 6263 93 60 4608 * 536 1688 * * 4629 1553 0 L 94 * 5512 * * 1075 * * 2595 * 2587 * * * * * * * 3647 * 3447 94 28 * 5725 * * * * 4633 0 0 V 95 3378 * * 2705 2674 * 5062 3971 3456 4402 * * 3663 * 2932 5052 4147 4172 * 6720 95 0 * * * * 0 * 4628 0 1000 T 96 5256 * * * * * * 1571 * 3342 4647 * * * * * 3173 1367 * * 96 0 * * * * * * 4633 0 0 S 97 * * 4889 * * 5379 * * * * * 5143 * * * 130 * * * * 97 0 * * * * * * 4633 0 0 A 98 997 5067 * * * 5100 * * * 3529 * 4341 * * * 2408 4889 3608 * * 98 0 * * * * * * 4633 0 0 V 99 * * 5576 * * * 4953 * 2058 2571 3964 5361 * * * * 4698 1617 * 3549 99 0 * * * * * * 4592 0 0 N 100 4494 * 4143 2741 * * * * 4667 * * 4008 * * * 3453 925 * * 5067 100 0 * * * * * * 4592 0 0 N 101 * * 4667 3161 5080 1096 * * 4196 * * 2702 5247 * 4329 5223 * * * 4633 101 0 * * * * * * 4592 0 0 N 102 * * 5247 795 * * * 3384 3870 * * 4422 * 3798 * 5432 4556 5393 * 5305 102 0 * * * * * * 4592 0 0 G 103 * * * * * 185 * * * * * 3504 * * * 4953 * * * * 103 0 * * * * * * 4592 0 0 V 104 * * * * 3964 * * 1149 * 2098 5373 * * * * * 4922 2363 * * 104 0 * * * * * * 4592 0 0 T 105 4848 * 2306 1429 * 4542 * * 3455 * * 3421 3120 5775 * * 5566 * 6687 * 105 0 * * * * * * 4594 0 0 E 106 2743 * 3549 1168 * * * * 3885 * * 5042 5521 3221 5816 4316 5318 * * * 106 0 * * * * * * 4594 0 0 L 107 * * * * 4734 * * 3224 * 318 * * * * * * * 4226 * * 107 0 * * * * * * 4594 0 0 F 108 5230 * * * 3148 * 5054 3873 3756 1576 4682 * * 5235 4834 4934 4518 2508 * * 108 0 * * * * * * 4486 0 0 A 109 2945 * 1905 2733 * * 4496 * 2876 * * 4415 * 4895 * 3090 3753 * * * 109 0 * * * * * * 4440 0 0 L 110 3145 * * 5108 3196 4895 * 3851 * 3923 * * * * 3624 4401 3810 4542 * 1568 110 0 * * * * * * 4440 0 0 L 111 * * * * 4895 * * 2277 * 464 4833 * * * * * * * * * 111 174 3978 4318 0 * * * 4440 1000 0 H 112 * * * 2090 * * 2255 * 4241 4224 * 3174 * 3158 4513 4174 * 4194 * 3782 112 0 * * * * 0 * 3870 0 1000 T 113 3115 * 3567 2518 * * * * 3817 * * 3154 * * * 3696 1453 * * * 113 0 * * * * * * 3589 0 0 E 114 * * 1949 768 * * * * 3696 * * 3710 * * * * * * * * 114 0 * * * * * * 3589 0 0 E 115 * * 3343 871 * * 3629 * 3389 * * * * 3509 3464 * * * * * 115 0 * * * * * * 3200 0 0 G 116 * * 2452 * * 1435 * * 1974 * * * 2375 * * * * * * * 116 0 * * * * * * 2490 0 0 C 117 * 1435 * * * * * 2452 * 2375 * * * * 1974 * * * * * 117 0 * * * * * * 2490 0 0 C 118 * 0 * * * * * * * * * * * * * * * * * * 118 0 * * 0 * * * 2297 0 0 //