BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (85 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P64447 Uncharacterized protein ynaJ n=62 Tax=Enterobact... 167 1e-40 UniRef50_A9MXM4 Putative uncharacterized protein n=33 Tax=Entero... 150 2e-35 UniRef50_C9Y5E8 Uncharacterized protein ynaJ n=2 Tax=Cronobacter... 85 8e-16 UniRef50_D0FSE8 Conserved uncharacterized protein YnaJ n=3 Tax=E... 72 6e-12 >UniRef50_P64447 Uncharacterized protein ynaJ n=62 Tax=Enterobacteriaceae RepID=YNAJ_ECO57 Length = 85 Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/85 (100%), Positives = 85/85 (100%) Query: 1 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI 60 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI Sbjct: 1 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI 60 Query: 61 FVYSLVFTVLLAIPLGIYFLGGEEQ 85 FVYSLVFTVLLAIPLGIYFLGGEEQ Sbjct: 61 FVYSLVFTVLLAIPLGIYFLGGEEQ 85 >UniRef50_A9MXM4 Putative uncharacterized protein n=33 Tax=Enterobacteriaceae RepID=A9MXM4_SALPB Length = 84 Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/84 (88%), Positives = 80/84 (95%) Query: 1 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI 60 MIM KLKSAKGKKFL LLAVFI+AASVVTRATIGGVIEQY+IPLSEWT+SMY IQS+MI Sbjct: 1 MIMMKLKSAKGKKFLLCLLAVFIVAASVVTRATIGGVIEQYHIPLSEWTSSMYAIQSAMI 60 Query: 61 FVYSLVFTVLLAIPLGIYFLGGEE 84 FVYSLVFT+LLAIPLGIYFLGG+E Sbjct: 61 FVYSLVFTILLAIPLGIYFLGGDE 84 >UniRef50_C9Y5E8 Uncharacterized protein ynaJ n=2 Tax=Cronobacter RepID=C9Y5E8_CROTZ Length = 86 Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 60/84 (71%) Query: 2 IMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIF 61 ++ KL++ GKKFL L+ VFI +VV+R T GV EQYN+P+ +W++SM+++Q + + Sbjct: 1 MLEKLRTPDGKKFLTALVIVFITVLTVVSRVTFEGVEEQYNMPMEQWSSSMFIMQGAWVL 60 Query: 62 VYSLVFTVLLAIPLGIYFLGGEEQ 85 +YS+ F+ ++++P YFLG ++ Sbjct: 61 IYSVPFSFIISLPFAFYFLGPKDD 84 >UniRef50_D0FSE8 Conserved uncharacterized protein YnaJ n=3 Tax=Erwinia RepID=D0FSE8_ERWPY Length = 88 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 48/74 (64%) Query: 10 KGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIFVYSLVFTV 69 K + F + V I AA V+T+A IGG I +YN+P S W +YV + MI +YS VFT+ Sbjct: 9 KRRNFFIAQICVLICAAIVMTKAIIGGAINEYNMPFSSWPVELYVSEFFMILIYSSVFTL 68 Query: 70 LLAIPLGIYFLGGE 83 LL+IPL +F+G + Sbjct: 69 LLSIPLWYFFIGEQ 82 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9Y5E8 Uncharacterized protein ynaJ n=2 Tax=Cronobacter... 110 2e-23 UniRef50_A9MXM4 Putative uncharacterized protein n=33 Tax=Entero... 106 2e-22 UniRef50_P64447 Uncharacterized protein ynaJ n=62 Tax=Enterobact... 106 2e-22 UniRef50_D0FSE8 Conserved uncharacterized protein YnaJ n=3 Tax=E... 95 5e-19 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_C9Y5E8 Uncharacterized protein ynaJ n=2 Tax=Cronobacter RepID=C9Y5E8_CROTZ Length = 86 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 60/84 (71%) Query: 2 IMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIF 61 ++ KL++ GKKFL L+ VFI +VV+R T GV EQYN+P+ +W++SM+++Q + + Sbjct: 1 MLEKLRTPDGKKFLTALVIVFITVLTVVSRVTFEGVEEQYNMPMEQWSSSMFIMQGAWVL 60 Query: 62 VYSLVFTVLLAIPLGIYFLGGEEQ 85 +YS+ F+ ++++P YFLG ++ Sbjct: 61 IYSVPFSFIISLPFAFYFLGPKDD 84 >UniRef50_A9MXM4 Putative uncharacterized protein n=33 Tax=Enterobacteriaceae RepID=A9MXM4_SALPB Length = 84 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 74/84 (88%), Positives = 80/84 (95%) Query: 1 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI 60 MIM KLKSAKGKKFL LLAVFI+AASVVTRATIGGVIEQY+IPLSEWT+SMY IQS+MI Sbjct: 1 MIMMKLKSAKGKKFLLCLLAVFIVAASVVTRATIGGVIEQYHIPLSEWTSSMYAIQSAMI 60 Query: 61 FVYSLVFTVLLAIPLGIYFLGGEE 84 FVYSLVFT+LLAIPLGIYFLGG+E Sbjct: 61 FVYSLVFTILLAIPLGIYFLGGDE 84 >UniRef50_P64447 Uncharacterized protein ynaJ n=62 Tax=Enterobacteriaceae RepID=YNAJ_ECO57 Length = 85 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 85/85 (100%), Positives = 85/85 (100%) Query: 1 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI 60 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI Sbjct: 1 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI 60 Query: 61 FVYSLVFTVLLAIPLGIYFLGGEEQ 85 FVYSLVFTVLLAIPLGIYFLGGEEQ Sbjct: 61 FVYSLVFTVLLAIPLGIYFLGGEEQ 85 >UniRef50_D0FSE8 Conserved uncharacterized protein YnaJ n=3 Tax=Erwinia RepID=D0FSE8_ERWPY Length = 88 Score = 95.4 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 34/74 (45%), Positives = 48/74 (64%) Query: 10 KGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIFVYSLVFTV 69 K + F + V I AA V+T+A IGG I +YN+P S W +YV + MI +YS VFT+ Sbjct: 9 KRRNFFIAQICVLICAAIVMTKAIIGGAINEYNMPFSSWPVELYVSEFFMILIYSSVFTL 68 Query: 70 LLAIPLGIYFLGGE 83 LL+IPL +F+G + Sbjct: 69 LLSIPLWYFFIGEQ 82 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.320 0.142 0.389 Lambda K H 0.267 0.0436 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 307,429,981 Number of Sequences: 3077464 Number of extensions: 9891621 Number of successful extensions: 51277 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 51268 Number of HSP's gapped (non-prelim): 9 length of query: 85 length of database: 1,040,396,356 effective HSP length: 55 effective length of query: 30 effective length of database: 871,135,836 effective search space: 26134075080 effective search space used: 26134075080 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.3 bits) S2: 87 (38.0 bits)