BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (95 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=... 185 4e-46 UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P... 108 4e-23 UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm... 107 1e-22 UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation... 107 1e-22 UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot... 101 8e-21 UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot... 96 3e-19 UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari... 94 1e-18 UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be... 90 3e-17 UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ... 89 6e-17 UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta... 84 2e-15 UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob... 82 6e-15 UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo... 79 3e-14 UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi... 78 7e-14 UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis... 77 1e-13 UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3... 76 3e-13 UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3... 75 4e-13 UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot... 75 5e-13 UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick... 75 7e-13 UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 75 8e-13 UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3... 74 1e-12 UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo... 74 2e-12 UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot... 74 2e-12 UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C... 73 2e-12 UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3... 73 2e-12 UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c... 73 3e-12 UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst... 73 3e-12 UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami... 72 5e-12 UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3... 72 5e-12 UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3... 72 5e-12 UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3... 72 5e-12 UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein... 71 1e-11 UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot... 71 1e-11 UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad... 71 1e-11 UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits... 71 1e-11 UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot... 70 2e-11 UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida... 70 2e-11 UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap... 69 6e-11 UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu... 68 8e-11 UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D... 68 1e-10 UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl... 68 1e-10 UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3... 67 2e-10 UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio... 67 2e-10 UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3... 66 3e-10 UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid... 66 3e-10 UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot... 66 3e-10 UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3... 66 4e-10 UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri... 65 7e-10 UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil... 65 7e-10 UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr... 64 1e-09 UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo... 64 1e-09 UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr... 63 2e-09 UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac... 63 3e-09 UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ... 63 3e-09 UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A... 62 7e-09 UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes... 62 7e-09 UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil... 61 1e-08 UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict... 61 1e-08 UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ... 61 1e-08 UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3... 61 1e-08 UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3... 60 2e-08 UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost... 60 2e-08 UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae... 60 2e-08 UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria... 60 3e-08 UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3... 60 3e-08 UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe... 59 4e-08 UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia p... 59 4e-08 UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_... 59 4e-08 UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ... 58 1e-07 UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax... 57 1e-07 UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M... 57 1e-07 UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3... 57 2e-07 UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation... 57 2e-07 UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3... 57 2e-07 UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3... 57 2e-07 UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba... 57 3e-07 UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter... 56 4e-07 UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3... 56 4e-07 UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg... 56 5e-07 UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P... 55 6e-07 UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom... 55 7e-07 UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther... 55 7e-07 UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)... 55 8e-07 UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3... 55 8e-07 UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro... 55 9e-07 UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium... 55 1e-06 UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3... 54 1e-06 UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot... 54 1e-06 UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida... 54 1e-06 UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax... 54 2e-06 UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t... 54 2e-06 UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y... 53 2e-06 UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot... 53 3e-06 UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ... 53 3e-06 UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr... 53 3e-06 UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation... 53 3e-06 UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot... 53 3e-06 UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation... 52 4e-06 UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys... 52 5e-06 UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri... 52 5e-06 UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic... 52 7e-06 UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ... 52 9e-06 UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3... 51 1e-05 UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell... 51 1e-05 UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro... 51 1e-05 UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3... 50 2e-05 UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact... 50 2e-05 UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin... 50 2e-05 UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3... 50 3e-05 UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3... 50 3e-05 UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot... 50 3e-05 UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo... 49 4e-05 UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot... 49 4e-05 UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro... 49 5e-05 UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact... 49 5e-05 UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri... 49 7e-05 UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa... 48 8e-05 UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr... 48 9e-05 UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re... 48 9e-05 UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3... 48 9e-05 UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul... 48 1e-04 UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3... 47 1e-04 UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3... 47 1e-04 UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3... 47 2e-04 UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=... 47 2e-04 UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R... 47 2e-04 UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev... 47 2e-04 UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=... 47 2e-04 UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R... 47 3e-04 UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG... 47 3e-04 UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero... 47 3e-04 UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3... 47 3e-04 UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri... 46 4e-04 UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3... 46 4e-04 UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal... 46 4e-04 UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3... 45 6e-04 UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth... 45 6e-04 UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e... 45 7e-04 UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex... 45 7e-04 UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot... 45 8e-04 UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium... 45 9e-04 UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3... 45 0.001 UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne... 45 0.001 UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr... 44 0.001 UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw... 44 0.001 UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1... 44 0.001 UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3... 44 0.002 UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3... 44 0.002 UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot... 44 0.002 UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia R... 44 0.002 UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali... 44 0.002 UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation... 44 0.002 UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost... 43 0.003 UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3... 43 0.003 UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3... 43 0.003 UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip... 43 0.003 UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act... 43 0.004 UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3... 42 0.004 UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p... 42 0.005 UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri... 42 0.005 UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus... 42 0.006 UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3... 42 0.009 UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal pro... 41 0.009 UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Ta... 41 0.009 UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr... 41 0.010 UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3... 41 0.011 UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=... 40 0.016 UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p... 40 0.021 UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid... 40 0.021 UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia... 40 0.023 UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=... 40 0.024 UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3... 39 0.037 UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3... 39 0.038 UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter... 39 0.039 UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor... 39 0.040 UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA 39 0.043 UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho... 39 0.061 UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2... 39 0.065 UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re... 38 0.091 UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3... 38 0.096 UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr... 38 0.097 >UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular organisms RepID=RP5M_SALTY Length = 95 Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 90/95 (94%), Positives = 93/95 (97%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQLNITG+NVEITEALREFVT KFAKLEQYF+RINQVYVVLKVEKVTH SDATLHVNGGE Sbjct: 1 MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHASAEGQDMYAAIDGLIDKLARQLT+HKDKLKQH Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95 >UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria RepID=RP5M_PSEPK Length = 102 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 50/91 (54%), Positives = 70/91 (76%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NI+G +VE+T+ LR++V K A++E +FD+I V V++KVEK+ +ATL + GGE Sbjct: 1 MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + A+AE +DMYAAID L DKL RQL KHK+K Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEK 91 >UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria RepID=B5JSL3_9GAMM Length = 117 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 50/97 (51%), Positives = 74/97 (76%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN--G 58 M +N+TG+++++T+ALR++V KF +LE++FD + Q++V+L EK H ++A +HV Sbjct: 1 MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 GE+ A AE +DMYAAIDGL+DKL RQL KHK+KL H Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDH 97 >UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98 Tax=Gammaproteobacteria RepID=A1RNM6_SHESW Length = 95 Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 50/95 (52%), Positives = 76/95 (80%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ + G+++EITE+LR +V KF+KLE++F++I+ V+VVL VEK+ ++A +++ GGE Sbjct: 1 MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A++E DMYAAID LIDKL RQ+ KHK+KL +H Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95 >UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH Length = 113 Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 46/95 (48%), Positives = 70/95 (73%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ ITG++V++T+AL+ +V KF +LE++FD + +V+L VEK+ ++A L ++G Sbjct: 1 MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +HA +DMYAAIDG+IDKL RQL KHK+K+ H Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDH 95 >UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6 Tax=Proteobacteria RepID=Q0ADR1_NITEC Length = 111 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 65/91 (71%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LN+TGN+V IT A+R++VT+K + ++FD I + V L V+K+ ++AT+H+ G E Sbjct: 1 MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 I A+ DMYA+ID L DKLARQ+ KHK+K Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEK 91 >UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWV9_9PROT Length = 212 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 44/95 (46%), Positives = 65/95 (68%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ++ITG +VE+TE ++ +VT K L+ FD + V+VVL VEK + ++ NG Sbjct: 26 MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IH S E +DMYA+IDG+IDK+ RQL +++ KL +H Sbjct: 86 IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRH 120 >UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria RepID=Q7W3J9_BORPA Length = 112 Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 66/95 (69%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L+I G ++++T A+RE+V K A++ ++FD + V+L VE + H ++ T+ + G + Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IH A +++YAAID L+DK+ RQ+ KHKDK++ H Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSH 95 >UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella RepID=B0TYD3_FRAP2 Length = 102 Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 62/93 (66%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG +VE+T+A++ +V K K+ YFD I V+L VEK ++A + V G E Sbjct: 1 MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 A AE +D+YAAID L DKLARQ+ KHK+KL+ Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLR 93 >UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVF2_9PROT Length = 107 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG N+EITEAL + KF K+ ++F+ I V +LK E H ++ LH+ E Sbjct: 1 MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + A G DMY ID LI K+ RQ+ K K+K K H Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDH 95 >UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria RepID=A5CWW3_VESOH Length = 102 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 68/95 (71%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQLNI+G++++ITEA+++ K K++ +F+++ + ++L+V+K ++A +HV+G + Sbjct: 1 MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A AE DMY +ID +++KL Q+ KHK+KL H Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNH 95 >UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FF9 Length = 104 Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 62/95 (65%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG++++IT A+ ++T+KF K+E +F ++ V L VEK H +++TLH+ + Sbjct: 1 MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHA A DMY AI+ LI KL Q+ K+K+K H Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNH 95 >UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PYC3_VIBCH Length = 78 Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 55/68 (80%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NI G+++++T++++++V +KF KLE++FD IN V V+L+VEK+ ++ATLHVN E Sbjct: 1 MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60 Query: 61 IHASAEGQ 68 IHA A+ + Sbjct: 61 IHAHADDE 68 >UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae RepID=C6M3U2_NEISI Length = 104 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 59/91 (64%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L ITG N ++TEA++ +V+ K ++ ++ V + L VEK+ ++A +H+ G + Sbjct: 1 MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +H A QDMYAAID L+DKL R + KHK+K Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEK 91 >UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134 Tax=Bacteria RepID=B8CYM6_HALOH Length = 184 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTHTSDATLHVNGG 59 M++ G N+++T AL+E+ K +KL +YFD + ++ ++VEK H + T ++NG Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + E QDMYA+IDG+++KL RQ+ K+K K+ Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKI 93 >UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Anaeromyxobacter RepID=A7HIE3_ANADF Length = 185 Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NIT ++E TEAL+ V + +++Y DR ++ + VL VE + H ++ T+ Sbjct: 1 MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + +A DMYA+ID DK+ RQL KHK+KL H Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNH 95 >UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM Length = 180 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 60/94 (63%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+N+T ++E ++ LR + K +++++Y D +VVLKVEK H ++ T+ NG Sbjct: 1 MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I+ + E DMY+AID L D L Q+ K K+K+++ Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRR 94 >UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli RepID=A8PQ11_9COXI Length = 111 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 64/94 (68%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ IT + +++T+AL++++ KF +LE+ + + +++ L +E + + A +H +G E Sbjct: 1 MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +A A+ +++Y AID LIDK+ +Q+ KHK K K+ Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKE 94 >UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ65_DESAH Length = 179 Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 63/95 (66%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ ++T ++ ++AL+ +V K + ++ + + VVL VEK+ H ++ TL + + Sbjct: 1 MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHA E ++MY++ID L+DK+A Q+ K+KDK+++H Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRH 95 >UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD Length = 180 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVNG 58 M+ + G+N+ +T AL+++V K A+L +YFDR Q+YV + VE + H + T+ VNG Sbjct: 1 MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A + DMYA+ID DKL Q+ ++K+KL + Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRR 97 >UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI17_THEYD Length = 173 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 61/93 (65%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ I G N+++TEAL++++ + K E++ ++ V + EK TH D L V+G Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 I A + +D+Y+A+D +++KL +Q+ K+K+K++ Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQ 93 >UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Proteobacteria RepID=Q122P6_POLSJ Length = 109 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M L I+G+++E+T ALR +VT+K ++ ++FD++ V V+L V+ + ++ +H Sbjct: 1 MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V G ++ A + D+YAA+D L DKL RQ+ ++K K K H Sbjct: 61 VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDH 100 >UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales RepID=Q97F93_CLOAB Length = 174 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+L ++G N+E+TE LRE V + +KLE+YF + +V L VEK + T+ NG Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + DMYA+ID + DKL RQ+ K K KL++ Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERR 95 >UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11 Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB Length = 182 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ +T ++E ++AL+ + K ++++Y D V V L VEK+ H ++ T+ G Sbjct: 1 MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I A+ E DMYA+ID + DK+ RQL + K+++K H Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH 95 >UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms RepID=RP5M_RALEH Length = 116 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 63/100 (63%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55 M I+G++++IT LRE+V K ++ ++FD++ V V+L V+ ++ LH Sbjct: 1 MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G +I A +D+YAAID L+DKL RQ+ ++KD+++ H Sbjct: 61 LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGH 100 >UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1DDE8_MYXXD Length = 221 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 56/95 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ NIT +++L+E+ K ++ + DR + +VVL +E+ H +D T+H Sbjct: 1 MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + DMYA+ID +DK+ RQL +++DKLK H Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSH 95 >UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2 Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV Length = 96 Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG- 59 MQ NITG +++I+ ALRE + +LEQ + I V L++ K ++ TL + Sbjct: 1 MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +IHA +DMYAAID L +KL +QL + K+KL++ Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEE 95 >UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Fusobacteriaceae RepID=C7N909_LEPBD Length = 106 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M++ I+G ++IT+A++ + K +++ +Y D I ++ VVL VE H +D + Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +G +I AE +D+YAAID L D+L RQ+ K+K++ K H Sbjct: 61 ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDH 100 >UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Leptospirillum RepID=A3EWH8_9BACT Length = 176 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 57/93 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ +TG ++EITEA+R V K L++ + V+L VEK + TLH NG Sbjct: 1 MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 IHA + D+YA++D +DKL RQL + K+K++ Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIR 93 >UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQU2_AKKM8 Length = 197 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG-E 60 + ITG +VE+T+A+REFVT K + F RI +V V+L V++ S L + Sbjct: 9 PITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHIT 68 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 I AS EG DMYA ID I K+ R++ KHK +L Sbjct: 69 IDASTEGTDMYACIDETITKIMRRMRKHKTRL 100 >UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJD6_9BACT Length = 178 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ IT + E+T+A+R++V +KL +YFD+I ++ VL +E + + +LH Sbjct: 1 MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + AE DMY AID ++K+ Q+ K KD++ H Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDH 95 >UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10 Tax=Clostridiales RepID=Q0B0B5_SYNWW Length = 181 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 57/92 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ I G N+EIT+AL+++ T + +KLE+Y D + + V L +E H + T+ +NG Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + DMY++ID + +KL +Q+ K+K +L Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRL 92 >UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae RepID=B0U6N0_XYLFM Length = 105 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 56/95 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + G +E+T ALRE+V K +L+++F ++ L + K+ H AT+++ G Sbjct: 1 MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++A+A MYAAID + DKL R + KHK+K H Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDH 95 >UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ3_9FIRM Length = 181 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 + G N+EIT +LRE+V + K+ +YFD + + V+L V K H + T+ + GG + Sbjct: 4 FTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGILL 63 Query: 63 ASAEG-QDMYAAIDGLIDKLARQLTKHKDKL 92 E DMY +ID +++KL RQ+ K K KL Sbjct: 64 RGEESTMDMYTSIDLVVEKLERQIHKQKTKL 94 >UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12 Tax=Firmicutes RepID=Q2RLX7_MOOTA Length = 190 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 59/94 (62%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+L I G N+ +T+ALR+++ + K+E+Y D ++++ V L V + H + T+ +NG Sbjct: 16 MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + DMY ++D +++KL +Q+ K+K +L + Sbjct: 76 LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNK 109 >UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MED7_PARUW Length = 211 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 58/93 (62%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 + ITG +VEIT++++ + K +K+E++ DRI V V++ ++K+ H + L +I Sbjct: 17 VKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKIQ 76 Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A DMYA+ID I +L Q+ ++K K++ H Sbjct: 77 SQAATPDMYASIDKAIARLEAQIRRYKSKIQDH 109 >UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria RepID=RAIA_ECO57 Length = 113 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 54/87 (62%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M +NIT +EIT A+R+ V + AKLE++ + +++L E +DAT++ G Sbjct: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87 + AS + +DMY AI+ LI+KL RQL K Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNK 87 >UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii RepID=A9KDT2_COXBN Length = 96 Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 54/95 (56%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + +TG V+I+ ALRE K +++ D I+ ++++ + K+ DA + + G Sbjct: 1 MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I+A AE DMY +D L+ KL QL+K+K K H Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDH 95 >UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA Length = 191 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 7/102 (6%) Query: 1 MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS-----DATL 54 MQ+ ++G NVE+TE +RE+V K ++L++Y D+I V L V V + + L Sbjct: 1 MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK-LKQH 95 +V GG I A DMYAAID D L RQL K K + +KQ Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTRYMKQR 102 >UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA Length = 212 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 57/93 (61%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 + +TG +V +TEA++ + K +K+++ RI V + + ++K+ H D L V+ +I Sbjct: 17 ITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKIK 76 Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A DMY +ID +DKL RQL K+K +++ H Sbjct: 77 SHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDH 109 >UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Gammaproteobacteria RepID=A6W0C2_MARMS Length = 105 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHAS 64 I+G+++++T A+++ + K +K+ + D+I V V L + + ++A +H+ G EI AS Sbjct: 6 ISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFAS 65 Query: 65 AEGQD-MYAAIDGLIDKLARQLTKHKDK 91 A +D ++ AID ++DKLA+Q+ KHK K Sbjct: 66 ASSEDRLFHAIDDMVDKLAKQIDKHKTK 93 >UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGY6_9BACT Length = 177 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 53/86 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT N+E+T+A+R++ K +KLE+YFD I V+L+V+K H + + G Sbjct: 1 MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLT 86 + + +D+YA+ID +DK+ +QL Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQLV 86 >UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Verrucomicrobia RepID=B4D5R5_9BACT Length = 191 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59 + + +TG +V +T+ ++++ T++ L + RI + +V+L VEK H ++ LH N Sbjct: 8 VPVKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHI 67 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 I AS E DMYA+IDG+ K+A+Q+ K+K K+ Sbjct: 68 TIEASHETDDMYASIDGVAAKIAQQMRKYKTKI 100 >UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIZ4_ACIFE Length = 181 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 57/92 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G N+E+T+AL+++V + + + F + ++ V++VEK HT + T+ +G Sbjct: 1 MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + A +MYA+ID ++K+ RQ+ K+K +L Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRL 92 >UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3 Tax=Psychrobacter RepID=A5WCB7_PSYWF Length = 132 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 10/102 (9%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----------KVTHTS 50 M ++ITG+++ IT+A+++ V K +K+E++FD+I + V+L ++ K H + Sbjct: 1 MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 +A + V G E+ + DMY AI + DKL RQ+ K+K ++ Sbjct: 61 EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRI 102 >UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12 Tax=Clostridia RepID=B0K3A9_THEPX Length = 181 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 1 MQLNITG-NNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ++G N + +T+ LR+ V +KL +YF +V VL V+K H ++ T+ G Sbjct: 1 MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A DMY +ID ++DK+ +Q+ KHK KLK Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96 >UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium RepID=C3WBJ3_FUSMR Length = 183 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M++ I G + IT+A++ + K ++E+Y D I ++ + L K+ HT++ ++ Sbjct: 1 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G + AS D+YAAIDG+ D L QL KHKDK++ Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIR 97 >UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales RepID=RAFY_STRP6 Length = 182 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 64/99 (64%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQV--YVVLKVEKVTHTS-DATLHVN 57 ++ +I G N+E+TEA+R++V +K K+E+YF + ++ V LKV + + + T+ ++ Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLD 61 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL-KQH 95 + A QDMY +ID ++DK+ RQ+ K+K K+ K+H Sbjct: 62 SVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH 100 >UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria RepID=B6EGD2_ALISL Length = 120 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQ--YFDRINQVYVVLKVEKVTHTSDATLHVNG 58 M++ ITGNN++IT +RE + KF KLE+ + D I + V K H +A + + G Sbjct: 1 MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTK--HKDKLKQ 94 G++ ASAE +D++ I + KL RQL K HK + ++ Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEARR 98 >UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium RepID=C9XLM7_CLODC Length = 187 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 1/94 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATL-HVNGG 59 MQ+ ++G +++T+ ++ +V K ++LE+Y D ++V V + +K + T+ +NG Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 I A D+YAAID + DKL+RQ+ K+K K+K Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVK 94 >UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y948_COPPD Length = 190 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS----DATLHV 56 +++++ G N+E+T A+++++ K ++ +YFD I V VV++ E+ + TL Sbjct: 7 VKIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDA 66 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 NG I A E D+YAAID DKL + + K+KL Sbjct: 67 NGRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKL 102 >UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli RepID=Q71WR7_LISMF Length = 187 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN--QVYVVLKVEKVTHTS-DATLHVN 57 ++ NI G N+E+TE +R++V K KLE+YF V+V LKV + + T+ + Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNAKVEVTIPLP 61 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A D+YA+ID ++DKL RQ+ KHK K+ + Sbjct: 62 NLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNR 98 >UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCZ2_9FIRM Length = 180 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 56/92 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G N+E+T AL+++V K + + F + ++ V+++E+ H + T+ +G Sbjct: 1 MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + A ++MYA+ID ++K+ RQ+ K+K +L Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRL 92 >UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter RepID=RP5M_ACIGB Length = 113 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 10/99 (10%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL----------KVEKVTHTS 50 MQ+ I G+++ IT A+ E + +F ++ ++ D++N + V L K H + Sbjct: 1 MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89 +A + + G E+ A A DMY AI L DKL RQL KH+ Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99 >UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes RepID=D2BPB3_LACLK Length = 185 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQV--YVVLKVEKVTHTS-DATLHVN 57 ++ NI G NVE+T+A+R +V K KL++YF+ ++V YV LKV + TL Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAK 61 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A QDMY++ID + +KL RQ+ K+K ++ + Sbjct: 62 NVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNR 98 >UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUS0_9FIRM Length = 176 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L + G N+++ + L+ KF+KL++YF Q V +K + T+ + G Sbjct: 1 MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A QDM+ +ID +DKL RQ+ K+K +LK+ Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKR 95 >UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus RepID=B5YF17_DICT6 Length = 179 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55 MQ+N NV IT+ L+++ K ++L ++FD I + V+ E H + T+ Sbjct: 1 MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 NG I AS QD +ID ++DKL QL + K+KL Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKL 97 >UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSN2_SYNAS Length = 209 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++++T N E ++V + +L +Y D V+VVL VEK + ++ ++ NG Sbjct: 31 MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + E +DM+ AID ++K+ RQL KHK+K++ + Sbjct: 91 LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGY 125 >UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21 Tax=Betaproteobacteria RepID=A9BRS9_DELAS Length = 119 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV-----EKVTHTSDATLH 55 M L I+G+++E+T +LR +V AK ++ ++FD++ V V+L V ++ + TL Sbjct: 1 MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 V G ++ D+YAA+D L DKL R + ++K + Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTR 96 >UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT Length = 200 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS--DATLHVNGGEIHASAEG 67 +E ++ALR + + AK+++YF +V VEK+ H + D TL NG ++H+S + Sbjct: 1 MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLR-NGLQLHSSEKT 59 Query: 68 QDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + MY++ID + K+ RQ+ ++KD++ H Sbjct: 60 ESMYSSIDMALAKMERQVRRYKDRITNH 87 >UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I442_9CLOT Length = 178 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++++ N T AL+E + K +K+++YFD + L V+K + T+ NG Sbjct: 1 MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +DMY +ID ++ KL RQ+ K + KL + Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRR 95 >UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus RepID=C7HV18_9FIRM Length = 177 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LNI G N+ + E+L+E KF +L++YF++ ++ + E ++T+ + GG Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60 Query: 61 IHASAEGQDMYA-AIDGLIDKLARQLTKHKDKLKQH 95 I + E D ++ ID +ID L RQ+ K K KL+++ Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQRN 96 >UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2 Length = 193 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI-NQVYVVLKVE---KVT--HTSDATL 54 M+L I GNN+ +TE++ ++V +K K ++F +V V L V ++T H ++ T+ Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + NG I A +++YA+ID + DK+ARQL K+K+K Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK 97 >UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1 Length = 207 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-VTHTSDATLHVNGG 59 MQ ++T E TEAL+E+ + ++++YF V+VV+ E+ H D T+ ++ G Sbjct: 1 MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60 Query: 60 EIHASAE-GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A E + M+++ID + K+ RQ+ ++KDKL+ H Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTH 97 >UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B9Y7S1_9FIRM Length = 178 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M+ I G NV ITEA+R+ + K + L++Y D + VV++ +T + T+ Sbjct: 1 MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + E +D+YAAID IDKL Q+ + K +L + Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRR 97 >UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5 RepID=B3RGS8_9CAUD Length = 105 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG- 59 MQ+ ITGN VEITE + F++ K +KLE+ N V +KVE A + N G Sbjct: 1 MQIEITGN-VEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNSGK 59 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK 87 E+ A A+G D Y A D ++D ARQL K Sbjct: 60 EVIAKAKGSDAYEATDRMVDVAARQLAK 87 >UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB Length = 209 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLKVEK-----VTHTSDATL 54 M+L I G N++IT+ +R ++ K + +F IN+V V L V + T++ T+ Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 VNG I A +++YA+ID + DK+AR+L K K+K Sbjct: 61 FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEK 97 >UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation protein family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G806_SORC5 Length = 122 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 49/85 (57%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT ++ T+A++ + K AKL+++ + V L VE +TH +D L Sbjct: 1 MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQL 85 HA+ G+DMYA+ID + DKL RQ+ Sbjct: 61 FHATERGEDMYASIDMVHDKLERQI 85 >UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM Length = 128 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQY-FDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M IT +++T + E + K+AKLE++ IN + K + +A++H+ G Sbjct: 1 MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ A +EG+D+YAAI L KL RQL K+ +K H Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH 96 >UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYI7_METI4 Length = 115 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 7/99 (7%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTS---DAT 53 MQ+ I+ V++T+AL + +KF KL + +RI V + E ++H + A Sbjct: 1 MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 L++ G +I A G D+Y A+D ++D+LARQL K K L Sbjct: 61 LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDL 99 >UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH Length = 111 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 49/81 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ +T N+E +E L++FV+ K K ++ FD + V+L VEK + ++ L + Sbjct: 1 MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60 Query: 61 IHASAEGQDMYAAIDGLIDKL 81 I E +DMYAAID ++DK+ Sbjct: 61 IIGKEETEDMYAAIDLVMDKI 81 >UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2 Tax=Alteromonadales RepID=Q21ND3_SACD2 Length = 118 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+N++G++VE+T+A+R KF K+ ++ ++ V V L VEK +AT G Sbjct: 1 MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHK 89 + + D+YAAI + KL L+ K Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRK 89 >UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM Length = 112 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 51/87 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT NV+ +++++E V ++ ++ I +V+L+ ++AT+HV G + Sbjct: 1 MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87 I A A ++YAA+D L DK+ RQL K Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDK 87 >UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT Length = 110 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 53/88 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT +++T ++RE+V +KF KLE+ + +V + E + +A + + G+ Sbjct: 1 MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKH 88 + A AE +D++AAI+ L KL RQ+ +H Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRH 88 >UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0Q0_9FIRM Length = 176 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 52/93 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++NI+ N ++ L+E + KF+KL++YF ++++ K + +A L G Sbjct: 1 MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + +D Y A+D + KL+RQ++K K KLK Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLK 93 >UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium RepID=A5TX76_FUSNP Length = 181 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 4/95 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHV 56 M+L+I G + +T+A+R++ K +K+E++ D I ++ L K+ H ++ ++ Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +G + A+A D+YA+ID +D + L KHK+K Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEK 95 >UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Sulfurihydrogenibium RepID=B2V794_SULSY Length = 187 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 11/102 (10%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN------QVYVVLKVEKVTHTS--DA 52 MQ+ G N+EIT+ ++ + K +L+ Y ++ +V VV EK H + D Sbjct: 1 MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60 Query: 53 TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +++N GG IHA E D+Y+AID +ID++ RQL + K + Sbjct: 61 DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQR 102 >UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna RepID=B0S0M8_FINM2 Length = 179 Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LN ++++T+ L++ +K KL++YF Q VV K EK + T+ ++ G Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60 Query: 61 I-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +D+ AID + D LARQ+ KHK KL++ Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKR 96 >UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus marinus RepID=A2C0K6_PROM1 Length = 194 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-----VYVVLKVEKVTHTSDATLH 55 M+L I G N+E+T +LR++ K K F + Q + V T++ T+ Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 NG I A +++YA+ID + +KLARQL K+K++ H Sbjct: 61 ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH 100 >UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEC8_9ACTO Length = 214 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDA------TL 54 M + + N EI RE+V K +K+ Q++ R +V V L E+ +D T+ Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A+ D YAA+D KL +L + +D++K H Sbjct: 61 YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDH 101 >UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae RepID=Q5SIS0_THET8 Length = 186 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLHVNGG 59 + G N+EIT+A+R++V K A+L++Y D VVL + H ++ + + GG Sbjct: 6 LIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQVDLPGG 65 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + E D+YAAID +D+L Q+ + +++ Sbjct: 66 LVRVEEEDADLYAAIDRAVDRLETQVKRFRER 97 >UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4 Tax=Acidithiobacillus RepID=RP5M_THIFE Length = 78 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK---VEKVTHTSDATLHVN 57 MQ+ ITG ++++T++++ + K +L +YFD ++ VVLK EK+++ D T++ Sbjct: 1 MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60 Query: 58 GGEIHASAEGQDMYAAID 75 G HA DMY ID Sbjct: 61 GHVFHAEVHDADMYTGID 78 >UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP Length = 178 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHV-NG 58 M++ IT N+++T A+++F + K+E+Y D++ + L V+ K+ + +HV N Sbjct: 1 MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A+A D+Y AID K QL K K+K K Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSR 97 >UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04A0 Length = 177 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 54/93 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ ++ N E+T+ + + + ++LE+YF+ + V + VEK T + ++ +G Sbjct: 1 MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + A EG++MY +D ++ L RQ+ + ++KL+ Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLR 93 >UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium RepID=C9XIR4_CLODC Length = 183 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGG 59 M + I+G +E+T+A++ + K +KL+ Y V V + K + T+ VNG Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 I A +++Y AID + DKL++QL K+K +L+ Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQ 94 >UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Aquificaceae RepID=B4U9J0_HYDS0 Length = 200 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 18/109 (16%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI----NQVYVVLKVEKVTHTSD----- 51 MQ+ G + EITE LR FV +K +K ++ ++ V + + HT D Sbjct: 1 MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60 Query: 52 ATLHVN---------GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + V+ GG +HA E +D+Y AID ++D++ RQL K K++ Sbjct: 61 SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKER 109 >UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD Length = 189 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 8/99 (8%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD---RINQVYVVLKVEK-----VTHTSDA 52 M++ + G N+ +T++L + K ++ ++FD + + V L E+ + ++ Sbjct: 1 MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60 Query: 53 TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 TL +NG + A +DMYA+ID + DKL RQ+ +++ + Sbjct: 61 TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGR 99 >UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXY8_9BACT Length = 119 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 2/93 (2%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVN-GGE 60 + I +++ITEA+R + K K++++F+ I V V L + +H + ++V+ G Sbjct: 4 ITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGPT 63 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 I A A DMY +ID ++DK+ QL KHK K++ Sbjct: 64 IVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIE 96 >UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ2_ACHLI Length = 185 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEI-TEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57 M+ I G N + T+A++ +V K K+ FD I+ V VVL+V K + T+ Sbjct: 1 MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + DMYAAID +DKL Q+ +HK K++ H Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHH 98 >UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTB3_BACTU Length = 181 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L +TG +V +TE ++ + K L ++ V V ++VEK T ++ NG Sbjct: 4 MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEK-RLTISVSVPFNGEL 62 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 I+A ++ +D Y A+D ++DK+ RQ+T KD Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKD 92 >UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4 Tax=Actinomycetaceae RepID=C2BSF1_9ACTO Length = 219 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN--- 57 M++ + N EI RE++ K AK+EQ R +V V L EK +D + Sbjct: 13 MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72 Query: 58 ---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D YAA+D KL +L + +D+ K H Sbjct: 73 LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH 113 >UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Psychromonas RepID=A1SRN9_PSYIN Length = 136 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ IT + IT+ +R V +F KLE+ + +V++ E +AT++V + Sbjct: 1 MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKH 88 I A A+ D+Y AI L KL RQLTK+ Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKY 88 >UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ Length = 192 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS---DATLHVN 57 ++ I G+N+ IT+A+R ++ K KLE+YF+ + +KV+ +++ + T+ + Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLK 61 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A D+YA ID + KL RQ+ K+K ++ + Sbjct: 62 NVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNR 98 >UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria RepID=RAIA_HAEIN Length = 107 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LNIT ++IT A+RE + + AKL ++ ++ + VL + +A++ G Sbjct: 1 MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87 + ASA DMY AI+ + +KL RQL K Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNK 87 >UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15 Tax=Desulfovibrionales RepID=Q310S7_DESDG Length = 190 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN--QVYVVLKVEKVTHTSDATLHVNG 58 M + T N E ++ L+++ +F KL ++ ++ ++ V+L V+K H ++ G Sbjct: 11 MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + A + +DMYA ID ++DKL Q+ KH +K K Sbjct: 71 LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105 >UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ Length = 207 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN--- 57 M++ +TG N E+T+ R V K KLE++ RI +V V +K E+ +D + + Sbjct: 1 MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60 Query: 58 ---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 G I A A D AA+D +DK+A Q+ + D Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRRASD 96 >UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PW5_SOLUE Length = 181 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD---RINQVYVVLKVEKVTHTSDATLHVN 57 M++ TG VE+ A + + A+FAK+ + D R +V+V+L +E+ H ++AT++ Sbjct: 1 MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 ++ D++ AIDG +KL +Q K + K + Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFR 96 >UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae RepID=C8P3U4_ERYRH Length = 180 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M + I G NVEIT+A++E V K L +YF D + VV+ V + T+ Sbjct: 1 MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G + A +D YAA+D ++DKL Q+ +HK K+ + Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISR 96 >UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VDW4_9CLOT Length = 170 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%) Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQD 69 +++TE L+ V K +KLE+YF V VEK + T+ + G I A D Sbjct: 5 IDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVSDD 64 Query: 70 MYAAIDGLIDKLARQLTKHKDKL 92 MY +ID +++ + RQ+ +HK KL Sbjct: 65 MYVSIDLVLEVIERQVNRHKKKL 87 >UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes RepID=Y1964_STAS1 Length = 190 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS---DATLHVN 57 ++ I G N+ IT+A+R ++ K KLE+YF+ + +KV+ +++ + T+ + Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLK 61 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89 + A D+YA ID + +KL RQ+ K+K Sbjct: 62 KVTLRAEERNDDLYAGIDLINNKLERQVRKYK 93 >UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12 Tax=Flavobacteria RepID=A0M3Z9_GRAFK Length = 100 Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M++N+ N + L +F K KL+ YFD+I V KV+ K ++ L V Sbjct: 1 MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 GG+I A +D + L RQL K K+K+ H Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99 >UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT Length = 119 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ++G N+++TEAL++ V + + + + ++N+ VVL + LH N Sbjct: 1 MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87 + A AE DMY +I +D+L RQL K Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEK 87 >UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QU53_PERMH Length = 188 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 11/98 (11%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN------QVYVVLKVEKVTHTSDATL 54 M++ G N+++TE ++ + K +L+ Y I+ +V V EK H + + Sbjct: 1 MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60 Query: 55 HV-----NGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87 + GG IHA E D+Y+AID +ID++ RQL + Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVR 98 >UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF930 Length = 129 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LNI+ ++IT A+R + + AKLE+Y ++ + +L + + +AT+ G+ Sbjct: 36 MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + A AE +D+Y AI + KL +L K K+K Sbjct: 96 LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEK 126 >UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia sp. EuI1c RepID=D1V7P2_9ACTO Length = 283 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDA------TL 54 M + + G + + E R V K AKLE+Y ++ +V V L E +D T+ Sbjct: 1 MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A D Y+A+DG KLA +L + ++ H Sbjct: 61 YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDH 101 >UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes RepID=C6Y270_PEDHD Length = 115 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHV 56 M++ + + + L +F+ K KL+Q+FD+I V LK+E V S+ L V Sbjct: 1 MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 GG + A + + A D I+ L +Q+TKHKDK + Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTR 97 >UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae RepID=A9WMP6_RENSM Length = 267 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV---- 56 M+ I+G N+ +++ RE+ T K +KLE +++ +V + + +D L V Sbjct: 26 MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85 Query: 57 --NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I A A D +AA D +KL +L + KDK K H Sbjct: 86 QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLH 126 >UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD Length = 196 Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 6/98 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVTH-----TSDATL 54 + + I+G V I+EALR V K + FD VVL+V+K T++ T+ Sbjct: 2 VDIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTV 61 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 V + +A DMYAAID DK++RQL K+K K+ Sbjct: 62 FVRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKV 99 >UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Synergistaceae RepID=D1B9M7_THEAS Length = 180 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 47/92 (51%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + NVE+ ++++ + K KLE++FDRI V + ++ + + T ++NG Sbjct: 1 MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + D+ A + + + RQ+ +HKD L Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDML 92 >UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM Length = 209 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + + ++++ ALRE + + + +YF+R + YV + E + ++H+ G Sbjct: 1 MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60 Query: 60 -EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A E D Y A + +++L ++L ++K KLK H Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNH 97 >UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BX30_HYPNA Length = 198 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 MQ+ ITG ++E+ EALR + A + +YF R V + + D +H+ G Sbjct: 1 MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60 Query: 60 EI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + +S + D YAA++ ++K+ +++ ++K +LK H Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH 97 >UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46 Tax=Bacteria RepID=Q28VX1_JANSC Length = 235 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQ-YFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M+ I+G +EI +AL+ V + Q Y +R VV + T+H++ G Sbjct: 45 MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104 Query: 60 -EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A A ++YAA + DKL +QL ++K +LK H Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDH 141 >UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZQ7_9FLAO Length = 100 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 13/104 (12%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M +N +V +E L E VT K KL+ +D I + V K E + + E Sbjct: 1 MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMI----CE 56 Query: 61 IHASAEGQDMYA---------AIDGLIDKLARQLTKHKDKLKQH 95 I SA GQ+++A AI ID + RQL K K+K+ H Sbjct: 57 IKLSAPGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100 >UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides RepID=D2EW39_9BACE Length = 99 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD----ATLHV 56 M++ I + + +E L+ FV K AKLE+++D I +V V LKV K + + V Sbjct: 1 MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 GE +A+ A+D ++ L +QL K+K+K Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEK 95 >UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MPR7_9FIRM Length = 211 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M +NIT +++T+A ++ T K AKL+++F V L +K T + T+ G Sbjct: 38 MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + D A D ID++ RQ+ K+K ++++ Sbjct: 98 IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEKQ 133 >UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRA6_9PROT Length = 197 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ITG +++ AL++ VT A +E+YFDR + V + E + + TLH+ G Sbjct: 1 MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60 Query: 60 EIHAS-AEGQDMYAAIDGLIDKL 81 AS +GQD Y A D + KL Sbjct: 61 VFLASHGKGQDAYGAFDTALQKL 83 >UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6 Tax=Leptospira RepID=B0SB82_LEPBA Length = 95 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 49/95 (51%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++N T +++ +EA + K ++ ++ +I V + ++ L+ +G Sbjct: 1 MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +A + +D+Y IDGL DK+ Q +KH DK QH Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95 >UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8 Length = 99 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHV 56 M + I + + T L F+ K +KLEQYFD I V LKV K + L V Sbjct: 1 MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 GE A AID ++ L +QL K K+K++ Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIR 97 >UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LB60_RHOVA Length = 199 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 6/99 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHT--SDATLHVN 57 M + +TG N+++ E+LRE+ + + L++Y R V + VEK T S +H+ Sbjct: 1 MTIKVTGKNIDLGESLREYALNRVESALDKYSGR--SVSGQISVEKNTDGFFSHCAIHLE 58 Query: 58 GG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G ++ ++ G D YA++D +++L ++L ++K ++ H Sbjct: 59 SGLDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH 97 >UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae RepID=B4RCJ5_PHEZH Length = 222 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M++ +TG +V++ EALR V + A +E+YFDR VV+ E D + + +G Sbjct: 13 MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ G D + A D + K+ +++ ++K +LK H Sbjct: 73 QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDH 109 >UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS Length = 198 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV-----VLKVEKVTHTSDATLH 55 M L + N ++++ R+ + K ++L++Y DRI++V V + + E H T+ Sbjct: 6 MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65 Query: 56 VNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + G + A ++YAAID + D L RQ+ ++KDK Sbjct: 66 GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDK 102 >UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE Length = 191 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 8/99 (8%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVY--VVLKVEK-----VTHTSDAT 53 M + +TG + +T+ALRE+ K + D I+ + +VL VEK + T Sbjct: 1 MSITVTGRKMPVTDALREYAEEKIGNSMKVMD-IDPLVAEIVLFVEKNPANPRPAVCEVT 59 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 L G I +DMYAAID K+ RQL K+K K+ Sbjct: 60 LRTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKV 98 >UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP Length = 127 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 5/94 (5%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLHVNGG 59 + G + +T+A++E + KF+ L ++ D I ++ V + ++ +T+ A + + G Sbjct: 15 LQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEIGGP 74 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 ++ ASAEG+D Y ID L++KL RQL + + K Sbjct: 75 DLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRK 108 >UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2 Tax=Proteobacteria RepID=A4U0N1_9PROT Length = 120 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 19/102 (18%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH------- 55 L IT + ++ +EA+ V K AKLEQ+FDRI V ++ + H + + LH Sbjct: 7 LQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESD---HKNSSNLHHKGNSYL 63 Query: 56 ------VNGGEI---HASAEGQDMYAAIDGLIDKLARQLTKH 88 V G E+ S E +D+YAA+ G + RQL ++ Sbjct: 64 VRIDLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEY 105 >UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales RepID=RP5M_BRAJA Length = 203 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M L I+G +V + EALR V+ + + L +YFD ++ L + +D LH++ G Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 60 -EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A + D YA+ D + + ++L ++K +LK Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDR 97 >UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ2_9BACT Length = 114 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT----LHV 56 M+L I +TE L+ F+ KFAK+ ++ + I+ V+LKV K ++ + ++V Sbjct: 1 MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 G H +D ++ + RQL+K+K+K Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEK 95 >UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174494B Length = 115 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD-----ATLH 55 MQ++I+ N+++T A+ ++ + +E I +VVL ++ T + A L Sbjct: 1 MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 V G +IHA D+YAA+D LARQL K K L Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTAL 96 >UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR Length = 256 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 45/91 (49%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M NI G NV IT+ +RE + K ++ + DRI ++ +T T+ Sbjct: 1 MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 H + +D+Y AID + K+ R++ K K++ Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKER 91 >UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO Length = 284 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 11/98 (11%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLK----VEKVT-----HTSDAT 53 + G ++EIT+++RE+ K K +FD+ + +V V +K T ++ T Sbjct: 84 VQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKTEVT 143 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 ++ G I + E D+YA+ID + DKL R+L K K+K Sbjct: 144 VYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEK 181 >UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQP5_9BACE Length = 181 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 45/95 (47%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ T V + + + K KL++YF + +V VEK + + T+ G Sbjct: 1 MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + DM+A ID + + RQL K+K +L++ Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKR 95 >UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18 Tax=Corynebacterineae RepID=A1T5Y3_MYCVP Length = 250 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVY-VVLKVEKVTHTSDATLHV---- 56 ++ +TG NVE+ + R +V K ++LE+ FDR ++ V L EK HV Sbjct: 48 EVAVTGRNVEVPDHFRSYVAEKLSRLER-FDRTLYLFDVELYHEKNRRQRKNCQHVEITA 106 Query: 57 --NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A YAA++ + KL +L K KD+ K H Sbjct: 107 KGRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH 147 >UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VXE1_9CLOT Length = 183 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ ITG V + + +E V K K + F V + VEK T + T+ G Sbjct: 1 MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60 Query: 61 IHASAE-GQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 ++ S + +M A+D +++ L RQ+ K+K KL++ Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEK 95 >UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEK7_9RHIZ Length = 198 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ITG N++ A + + + K L +Y DR+ +V L+ E+ + ++ + G Sbjct: 1 MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60 Query: 60 EI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A EG D Y ++D +L ++ ++K ++K H Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNH 97 >UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales RepID=C6II14_9BACE Length = 123 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDA----TLHV 56 M + I + + +E L+ F+ K +KLE+Y++ I +V V LKV K + + + Sbjct: 25 MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 GE +AS A+D ++ L +QL K+K+K Sbjct: 85 PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEK 119 >UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Marinomonas RepID=A6VX39_MARMS Length = 130 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 4/93 (4%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-VTH--TSDATLHVNGG 59 LNI+G++V+ E ++E V K L + ++I + V L EK TH +A++H+ G Sbjct: 4 LNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPGH 63 Query: 60 EIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDK 91 ++ A + + + A+D L+ KL +QL KHK K Sbjct: 64 DLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAK 96 >UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium RepID=A9W5P1_METEP Length = 202 Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%) Query: 3 LNITGNNVEITEALREFVTAKFAK-LEQYFDR----INQVYVVLKVEKVTHTSDATLH-V 56 L +TG+ +++ ALR V + A L +Y D +V L+ + + +D LH V Sbjct: 4 LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + AS D++A+ + DKL ++L ++K KLK H Sbjct: 64 TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDH 102 >UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FNI8_SACEN Length = 231 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATL 54 M + + G NVE+ + R+ V K +LE+Y + + V L + K + TL Sbjct: 1 MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D YAA+D KL +L + D+ K H Sbjct: 61 KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH 101 >UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae RepID=A1ZNT3_9SPHI Length = 100 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD-----ATLH 55 M+L + L EF+ K KLE ++DRI V L++EK H D L+ Sbjct: 1 MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + G + AA D ++ L RQL KHK+K Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96 >UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21 Tax=Shewanella RepID=A3QBU6_SHELP Length = 124 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 49/85 (57%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 + IT + E+T +RE + ++ KL ++ ++ +V++ EK +A++ + + Sbjct: 2 IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61 Query: 63 ASAEGQDMYAAIDGLIDKLARQLTK 87 A A+ +D+YAAI+ + KL +QL + Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNR 86 >UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IJQ7_AZOC5 Length = 198 Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 2/95 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M L ++G N+++ EALR+ + + ++ + +YFD + + E + S+ LH++ G Sbjct: 1 MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60 Query: 60 -EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + A Q+ A D ++K+ ++L ++K +LK Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLK 95 >UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ Length = 178 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVN 57 M+ ITG VEI+EA++ ++ + K+++ + V +++EK + +++ Sbjct: 1 MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I+ D+Y AID D L +Q+ + K++LK H Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH 98 >UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae RepID=C9M512_9BACT Length = 197 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-TSDATLHVNGG 59 M + T +N +I ++E++ K ++E++F RI + V +K +K T + T NG Sbjct: 16 MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + D+ A D + L R++ +HK+ L Sbjct: 76 VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYL 108 >UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG17_9BACT Length = 123 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDATLHV 56 L ITG ++++TEA+++ V K +L ++ +RI +V V L+ + + + + Sbjct: 9 LIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIEI 68 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87 NG ++ S D Y A+D L+DKL R L + Sbjct: 69 NGPTMNVSVSDPDCYKAVDLLVDKLDRMLRR 99 >UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487B8_COLP3 Length = 111 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ I+G++VEITE +++ + KFAK+ +++ I + + VE + T G + Sbjct: 1 MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + +A + +Y AI + KL L K L Sbjct: 61 VTVNASDKQLYVAIAKVAKKLQSALAHRKGVL 92 >UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00W70_OSTTA Length = 184 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 10/101 (9%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEK-------VTHTSD 51 +++ + G ++EIT A+ E+V +K + + D I +V V V H ++ Sbjct: 50 VKMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTE 109 Query: 52 AT-LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 T L G +HA G+++YA ID D + R + KHK+K Sbjct: 110 VTVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEK 150 >UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD Length = 179 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LN+ N +T+ +R KF +L++YF ++ V E + T ++ G Sbjct: 1 MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60 Query: 61 IHASAEGQDMYA-AIDGLIDKLARQLTKHKDKL 92 I S + Y AID ID L RQ+ K+K KL Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKL 93 >UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP Length = 126 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 7/98 (7%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHV--NGG 59 ++G ++E+T +L+ FV K +L ++ +RI +V V L+ E V A HV +G Sbjct: 11 VSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEIHGP 70 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK--HKDKLKQH 95 +++A + + + AI LIDKL R L+K H K+++H Sbjct: 71 DLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRH 108 >UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5 Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5 Length = 196 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ++G ++ + +ALR V + + L +YFD ++ L + +D LH++ G Sbjct: 1 MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 60 -EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + A + D YA+ D + ++ ++L ++K KLK Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLK 95 >UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia RepID=B2S0F3_BORHD Length = 103 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVLKVEKVTHTSDATLHVNGG 59 M+ I N ++ + ++F+ K KL + + ++ + + +K E DA LH N G Sbjct: 6 MEPKIQAINYHLSNSTKDFIIKKLEKLGTHIKQNSESLKITIKKENDIFDIDAHLHFNWG 65 Query: 60 EI-HASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +I H EG+++Y +I+ LI++L K K+K Sbjct: 66 KIIHIKEEGKELYHSIENLIERLQNTANKEKNK 98 >UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0T2_SALRD Length = 132 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL-KVEKVTHTSDATLHVNGG 59 Q +T +V++++ + E+ + AKLEQ++D I +V+L K A+++++ Sbjct: 29 FQTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVY 88 Query: 60 EIHASAE--GQDMYAAIDGLIDKLARQLTKHKDKLK 93 + SAE AI+ +D L RQL K+K KL+ Sbjct: 89 QKRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLR 124 >UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33 Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN Length = 122 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++NI+G++V++T++++E + KFAK+ +F + + +++ E + + + G Sbjct: 1 MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 I A MY AI KL L K +LK Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLK 93 >UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SAX9_OSTLU Length = 132 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVT-------HTSDAT-L 54 + G ++EIT A+ E+ AK K + D I +V V H ++ T L Sbjct: 3 VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 G +HA G+++YA ID D + R + KHK+K Sbjct: 63 MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEK 99 >UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Nautiliaceae RepID=B9L9D3_NAUPA Length = 166 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQY-FDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M + I G NVE+TEA+++ ++ +++E+Y ++ + V K ++ T + +++ + Sbjct: 1 MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + +DMYAA+D DKL + L ++ DK+ + Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDY 97 >UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO Length = 199 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK----LEQYFDRINQVYVVLKVEKVTHTSDATLHV 56 M+ + VE+TEAL ++ + +K L+++ D ++ V + E+ + + T H+ Sbjct: 1 MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60 Query: 57 NGGE--IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 N I D+Y AID + D L R++ K K++L++ Sbjct: 61 NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQEQ 101 >UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSP2_9BACT Length = 98 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56 M + I + L EFV K KL+++ +R V+LK++K + LH+ Sbjct: 1 MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G ++ A + G+ A+D I+ L RQ+ K+K +L++ Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK 98 >UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales RepID=D0LFC2_GORB4 Length = 270 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLHVNG 58 +G NVEI + R +V K A+LE++ I + V L E K+ + T G Sbjct: 65 FSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITATGKG 124 Query: 59 GEIHASAEGQDMYAAIDGLIDKL 81 + A A G++ YAA++G +DKL Sbjct: 125 PIVRAQACGENFYAALEGSLDKL 147 >UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N462_9BACT Length = 114 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL--EQYFDRINQVYVVLKVEKVTHTSDATLHVNG 58 M++++TG EIT ++RE+V ++ L ++ D + VV+ +K + + ++ Sbjct: 1 MKISVTGRQFEITPSIREYVESRIQALVEDKALD-FSSAKVVMDYQKNSFKTTLVVNCKY 59 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A E D+Y + D + K+ QL ++K++ H Sbjct: 60 HVVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSH 96 >UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD Length = 125 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS------DATL 54 M+L + + + L F+ K KL+ ++DRI V LK+ K +T + L Sbjct: 1 MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +V GG + +G A D ID L Q+ K K+K Sbjct: 61 YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNK 97 >UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A8RDK2_9FIRM Length = 177 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M++NI G N+ +T AL E + K LE+YF D VV++V + T+ Sbjct: 1 MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + D+YAAID IDKL Q+ + K +L Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRL 94 >UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TBM2_RICCO Length = 58 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 29/40 (72%) Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++G ++ + QD+YAAID LIDKL RQ+ K+K K++ H Sbjct: 1 MSGKTVYVESLSQDLYAAIDTLIDKLDRQVMKYKAKVQGH 40 >UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSN7_9PROT Length = 202 Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M++++ G +++ + LR+ + + + +YF + V L + +D +H+ G Sbjct: 10 MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69 Query: 60 EIHASAEGQ--DMYAAIDGLIDKLARQLTKHKDKLKQH 95 I AEG+ D YAA +++ +QL ++K +L+ H Sbjct: 70 -ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDH 106 >UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE Length = 117 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55 M++ + G N +T+A RE + +F K+ + + Q+ V L ++ ++ATL+ Sbjct: 1 MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPSIPEAQVAEATLY 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLT 86 + G + A AE DM AI+ ++L +Q+ Sbjct: 61 LKGVTLRARAEAGDMGHAINLCEEQLFKQVK 91 >UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Flavobacteriales RepID=A8UI75_9FLAO Length = 101 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD-------AT 53 M++N N L +F+ + KL+ ++D+I Q V LKVE +TSD A Sbjct: 1 MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVE---NTSDKENKIFEAK 57 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + V G + + D I L RQ+ K K+KL+ Sbjct: 58 VSVPGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLR 97 >UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4 Tax=Bacteroidetes RepID=A2U255_9FLAO Length = 100 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 9/102 (8%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT------- 53 M +N ++VE +E L + T K KL F I + V K E + SD T Sbjct: 1 MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTS--SDNTGMICNIR 58 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L V G + A A + ++I+ + L QLTK KDK+ + Sbjct: 59 LSVPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMSTY 100 >UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Alphaproteobacteria RepID=B0T677_CAUSK Length = 210 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 MQ+ I+G +V++ EALR V+ + + +YFDR VV+ E D ++ + +G Sbjct: 1 MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ + G D +AA D + K+ ++ ++K +LK H Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSH 97 >UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR Length = 209 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 10/95 (10%) Query: 5 ITGNNVEITEALREFVTAKFA----KLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55 I G N+E+T AL E V + KL I + V+L V K H + + Sbjct: 15 INGQNIELTPALVEHVNKRIGGQINKLASN-GAIQECDVILSVSKNPKVKNGHRVEVVTN 73 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 + G I E DMYA+ID L R+L K+KD Sbjct: 74 LKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108 >UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29 Tax=Actinomycetales RepID=C7MXY7_SACVD Length = 226 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATL 54 M + I G NVE+ E R V K A+LE+Y ++ V L E K + T Sbjct: 1 MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81 G + A A D Y A+D I KL Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKL 87 >UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L9_ACIC5 Length = 225 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 43/92 (46%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ TG +V + A R ++ + RI +VVL EK ++ T+ + + Sbjct: 1 MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + ++AE M A+ ++K Q + K K+ Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKM 92 >UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia RepID=C4K0H4_RICPU Length = 192 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M ++++G ++ I L+E+ + ++ ++YF I + + E + D + G Sbjct: 1 MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 E---IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + ++ D+Y A D + KL +QL K+K K K H Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNH 99 >UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN Length = 195 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTH-----TSDATL 54 + + I+G V +++ALR V K + FD + VVL+V+K + + T+ Sbjct: 2 VDIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTV 61 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 V + + G DMY AID +K+ RQL K+K ++ Sbjct: 62 FVRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRI 99 >UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPI1_PARL1 Length = 193 Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 MQ+ ++G+++++ +ALR T + A + +YFDR V L + +D + H++ G Sbjct: 1 MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60 Query: 60 -EIHASAEGQDMYAAIDGLIDKL 81 ++A ++YA+ + +++L Sbjct: 61 LRVNAQGTANEVYASFEAALERL 83 >UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=bacterium Ellin514 RepID=B9XGM0_9BACT Length = 117 Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 23/107 (21%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDAT----- 53 M+L +T +N+ +T+A+ + ++ KLE +FDR IN +VT D+T Sbjct: 1 MKLILTTHNLTLTQAIENHILSRIDKLE-HFDRFAIN--------ARVTLDHDSTKAVNR 51 Query: 54 -------LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 L V G ++ A DMYAAID + K+ +Q+ K + K K Sbjct: 52 QFKCSMRLAVPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHK 98 >UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class) RepID=Q6AGI3_LEIXX Length = 232 Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 7/102 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI--NQVYVVLKVEKV-THTSD----AT 53 M +NI G N+ IT+ RE+ K K+ +R ++ V EK+ T D T Sbjct: 1 MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L + + A G D YAA D + KL ++ + KD+ K H Sbjct: 61 LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVH 102 >UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia RepID=C6V4K5_NEORI Length = 186 Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M++ ++G+ ++ +L E++T + ++++ + V L E D ++ Sbjct: 1 MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I AS E D Y A D K+ +L ++KD+LK+H Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEH 96 >UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA Length = 172 Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 12/105 (11%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN----- 57 L IT +E +EAL E + KLEQ++D I +VV++ HV Sbjct: 66 LQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRVDVSV 125 Query: 58 -GGEIHASAEGQ------DMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I AS + Q D Y A+ D RQL + D L H Sbjct: 126 PGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTH 170 >UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula baltica RepID=Q7UMU4_RHOBA Length = 113 Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 20/106 (18%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----------KVTHT 49 MQ+N++ + + + V K KL + +DR+N + V + +E V H+ Sbjct: 1 MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60 Query: 50 SDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 D H AE + AA+D I K +QL K K+K +H Sbjct: 61 DDLIAH---------AEATTVIAALDSAIPKAEQQLRKLKEKKTEH 97 >UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group RepID=Q9ZD30_RICPR Length = 143 Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M ++++G ++ I L+E+ K + +++Y I + + E + D + G Sbjct: 1 MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 E---IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + I ++ D+Y A D + KL +QL K K K K H Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNH 99 >UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF Length = 234 Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN---G 58 Q++ITG NVE+ E E V K AK+E+ + +V L+ E +D + + Sbjct: 25 QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84 Query: 59 GEIH---ASAEGQDMYAAIDGLIDKLARQLTKHK 89 G+ H A A+ YAA++ + K+ R L K K Sbjct: 85 GKGHIARAEAKEDSFYAALETALAKMERSLRKVK 118 >UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT Length = 155 Score = 38.1 bits (87), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 52/92 (56%), Gaps = 6/92 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLH 55 +L ++G ++E+T +L+ FV K +L ++ +RI ++ + L+ ++ T + + Sbjct: 38 ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87 +NG +AS + + A++ L++KL R + + Sbjct: 98 INGPAFNASVVSGECHNAVNLLVEKLDRMIRR 129 >UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPK4_BDEBA Length = 116 Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LN T +++ +E+L + + A++ ++ + + Y + KV + + VN E Sbjct: 1 MKLNYTFKHLDHSESLETYTEERMAEVGRFL--LREGYGNVYFSKVKNEFCVEISVNTRE 58 Query: 61 --IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A+A G D+Y A+D +K+ +Q K + K H Sbjct: 59 KYFKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDH 95 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=... 133 1e-30 UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C... 127 1e-28 UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari... 127 1e-28 UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P... 124 1e-27 UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3... 123 1e-27 UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D... 123 2e-27 UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot... 122 3e-27 UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot... 122 3e-27 UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3... 122 4e-27 UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3... 121 6e-27 UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot... 121 1e-26 UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot... 120 1e-26 UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot... 120 1e-26 UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost... 120 2e-26 UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be... 119 2e-26 UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3... 119 2e-26 UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst... 119 3e-26 UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation... 118 5e-26 UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3... 118 6e-26 UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ... 118 7e-26 UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits... 117 9e-26 UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm... 117 1e-25 UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac... 116 1e-25 UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ... 115 6e-25 UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid... 114 8e-25 UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3... 114 9e-25 UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo... 114 9e-25 UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio... 113 2e-24 UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c... 113 2e-24 UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil... 111 6e-24 UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot... 111 7e-24 UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 110 1e-23 UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo... 110 1e-23 UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3... 109 3e-23 UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein... 108 5e-23 UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida... 108 6e-23 UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis... 108 7e-23 UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria... 107 9e-23 UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P... 107 1e-22 UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo... 107 1e-22 UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil... 106 1e-22 UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_... 106 2e-22 UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ... 106 2e-22 UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes... 106 3e-22 UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl... 106 3e-22 UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ... 105 5e-22 UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe... 105 5e-22 UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob... 105 6e-22 UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3... 105 6e-22 UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3... 105 6e-22 UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther... 104 8e-22 UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami... 104 8e-22 UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot... 104 8e-22 UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr... 104 9e-22 UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys... 104 1e-21 UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium... 103 1e-21 UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap... 103 2e-21 UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo... 103 2e-21 UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri... 103 2e-21 UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom... 102 3e-21 UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot... 101 6e-21 UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3... 101 6e-21 UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot... 101 6e-21 UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e... 101 6e-21 UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3... 101 7e-21 UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad... 101 7e-21 UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri... 101 9e-21 UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr... 100 1e-20 UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ... 100 1e-20 UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict... 100 2e-20 UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta... 100 2e-20 UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3... 100 2e-20 UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation... 99 3e-20 UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic... 99 3e-20 UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul... 99 4e-20 UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot... 98 7e-20 UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax... 98 8e-20 UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3... 97 1e-19 UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3... 97 2e-19 UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3... 96 3e-19 UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero... 96 4e-19 UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu... 95 5e-19 UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG... 95 5e-19 UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3... 95 5e-19 UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro... 95 6e-19 UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot... 95 6e-19 UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y... 95 9e-19 UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3... 94 1e-18 UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter... 94 1e-18 UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg... 94 1e-18 UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin... 94 1e-18 UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot... 94 1e-18 UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3... 94 1e-18 UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot... 94 1e-18 UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3... 94 2e-18 UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R... 93 2e-18 UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax... 93 3e-18 UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri... 93 3e-18 UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)... 93 4e-18 UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3... 92 4e-18 UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot... 92 4e-18 UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae... 92 5e-18 UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3... 92 7e-18 UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3... 92 8e-18 UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium... 91 1e-17 UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne... 91 1e-17 UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3... 90 1e-17 UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro... 90 2e-17 UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3... 90 2e-17 UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation... 90 3e-17 UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3... 90 3e-17 UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida... 89 3e-17 UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A... 89 4e-17 UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri... 89 5e-17 UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick... 89 5e-17 UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi... 88 6e-17 UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell... 88 1e-16 UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba... 87 1e-16 UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation... 87 2e-16 UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3... 85 5e-16 UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re... 85 5e-16 UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth... 85 7e-16 UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3... 84 1e-15 UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa... 84 1e-15 UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R... 84 1e-15 UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex... 84 2e-15 UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact... 83 2e-15 UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3... 83 2e-15 UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M... 83 3e-15 UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ... 82 7e-15 UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr... 82 8e-15 UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr... 81 9e-15 UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact... 81 9e-15 UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3... 81 1e-14 UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr... 81 1e-14 UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t... 80 2e-14 UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal... 80 2e-14 UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw... 80 3e-14 UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3... 79 4e-14 UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1... 79 4e-14 UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3... 79 5e-14 UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev... 77 1e-13 UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro... 77 2e-13 UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali... 77 3e-13 UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=... 73 2e-12 UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia p... 73 2e-12 UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3... 73 2e-12 UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3... 72 7e-12 UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=... 72 8e-12 Sequences not found previously or not previously below threshold: UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3... 101 7e-21 UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri... 94 1e-18 UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens ... 89 5e-17 UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Acti... 88 1e-16 UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3... 86 3e-16 UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=R... 86 3e-16 UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3... 86 4e-16 UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea s... 85 6e-16 UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p... 85 8e-16 UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S3... 85 9e-16 UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3... 83 2e-15 UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=... 83 2e-15 UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S3... 83 2e-15 UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation... 83 3e-15 UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3... 83 3e-15 UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S3... 83 4e-15 UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter... 82 4e-15 UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=... 82 4e-15 UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia... 82 5e-15 UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3... 82 6e-15 UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3... 82 6e-15 UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re... 81 9e-15 UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation... 80 1e-14 UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3... 80 2e-14 UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chl... 80 2e-14 UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act... 80 3e-14 UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2... 78 7e-14 UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S3... 78 1e-13 UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr... 77 2e-13 UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kyto... 77 2e-13 UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p... 77 2e-13 UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation ... 77 2e-13 UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3... 77 3e-13 UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid... 77 3e-13 UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor... 76 3e-13 UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Gro... 76 3e-13 UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1... 75 5e-13 UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=... 75 5e-13 UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil... 75 8e-13 UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost... 75 9e-13 UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3... 75 1e-12 UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation... 74 1e-12 UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorob... 73 2e-12 UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Prop... 73 2e-12 UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip... 73 2e-12 UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal prote... 73 4e-12 UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=... 72 5e-12 UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacte... 72 6e-12 UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3... 71 1e-11 UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bactero... 71 1e-11 UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3... 71 1e-11 UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr... 70 2e-11 UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S3... 70 2e-11 UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S3... 70 2e-11 UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M6... 70 2e-11 UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p... 69 6e-11 UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavob... 68 6e-11 UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Ther... 68 6e-11 UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associ... 68 7e-11 UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA 68 9e-11 UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal pro... 68 1e-10 UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostri... 68 1e-10 UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Act... 68 1e-10 UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chi... 68 1e-10 UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Ta... 67 1e-10 UniRef50_A3U9H3 Site-specific recombinase, phage integrase famil... 67 2e-10 UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S3... 67 2e-10 UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia muc... 66 3e-10 UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation... 66 3e-10 UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=... 66 3e-10 UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S3... 66 4e-10 UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S3... 65 5e-10 UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Camp... 65 5e-10 UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S3... 65 6e-10 UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Ro... 65 7e-10 UniRef50_A2TTF7 Site-specific recombinase, phage integrase famil... 65 8e-10 UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Bla... 65 1e-09 UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac... 64 1e-09 UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S3... 64 1e-09 UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavoba... 63 2e-09 UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S3... 63 4e-09 UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verr... 62 7e-09 UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho... 62 7e-09 UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magneto... 61 9e-09 UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 T... 61 1e-08 UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S3... 61 1e-08 UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella bu... 60 2e-08 UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydroge... 60 2e-08 UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce... 60 2e-08 UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3... 60 2e-08 UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal p... 60 2e-08 UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavoba... 60 3e-08 UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S3... 59 4e-08 UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl... 59 4e-08 UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azo... 59 6e-08 UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S3... 58 6e-08 UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhiz... 58 6e-08 UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spiroso... 58 7e-08 UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwen... 58 9e-08 UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplas... 58 1e-07 UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroh... 57 2e-07 >UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular organisms RepID=RP5M_SALTY Length = 95 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 90/95 (94%), Positives = 93/95 (97%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQLNITG+NVEITEALREFVT KFAKLEQYF+RINQVYVVLKVEKVTH SDATLHVNGGE Sbjct: 1 MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHASAEGQDMYAAIDGLIDKLARQLT+HKDKLKQH Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95 >UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales RepID=Q97F93_CLOAB Length = 174 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+L ++G N+E+TE LRE V + +KLE+YF + +V L VEK + T+ NG Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + DMYA+ID + DKL RQ+ K K KL++ Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERR 95 >UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWV9_9PROT Length = 212 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 44/95 (46%), Positives = 65/95 (68%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ++ITG +VE+TE ++ +VT K L+ FD + V+VVL VEK + ++ NG Sbjct: 26 MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IH S E +DMYA+IDG+IDK+ RQL +++ KL +H Sbjct: 86 IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRH 120 >UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria RepID=RP5M_PSEPK Length = 102 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 50/91 (54%), Positives = 70/91 (76%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NI+G +VE+T+ LR++V K A++E +FD+I V V++KVEK+ +ATL + GGE Sbjct: 1 MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + A+AE +DMYAAID L DKL RQL KHK+K Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEK 91 >UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Leptospirillum RepID=A3EWH8_9BACT Length = 176 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 57/93 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ +TG ++EITEA+R V K L++ + V+L VEK + TLH NG Sbjct: 1 MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 IHA + D+YA++D +DKL RQL + K+K++ Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIR 93 >UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA Length = 191 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 6/97 (6%) Query: 1 MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV-----EKVTHTSDATL 54 MQ+ ++G NVE+TE +RE+V K ++L++Y D+I V L V + + + L Sbjct: 1 MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +V GG I A DMYAAID D L RQL K K + Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTR 97 >UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH Length = 113 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 46/95 (48%), Positives = 70/95 (73%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ ITG++V++T+AL+ +V KF +LE++FD + +V+L VEK+ ++A L ++G Sbjct: 1 MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +HA +DMYAAIDG+IDKL RQL KHK+K+ H Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDH 95 >UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM Length = 180 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 60/95 (63%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+N+T ++E ++ LR + K +++++Y D +VVLKVEK H ++ T+ NG Sbjct: 1 MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I+ + E DMY+AID L D L Q+ K K+K+++ Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRR 95 >UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11 Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB Length = 182 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ +T ++E ++AL+ + K ++++Y D V V L VEK+ H ++ T+ G Sbjct: 1 MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I A+ E DMYA+ID + DK+ RQL + K+++K H Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH 95 >UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134 Tax=Bacteria RepID=B8CYM6_HALOH Length = 184 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTHTSDATLHVNGG 59 M++ G N+++T AL+E+ K +KL +YFD + ++ ++VEK H + T ++NG Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + E QDMYA+IDG+++KL RQ+ K+K K+ + Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKINR 95 >UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6 Tax=Proteobacteria RepID=Q0ADR1_NITEC Length = 111 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 65/91 (71%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LN+TGN+V IT A+R++VT+K + ++FD I + V L V+K+ ++AT+H+ G E Sbjct: 1 MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 I A+ DMYA+ID L DKLARQ+ KHK+K Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEK 91 >UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12 Tax=Firmicutes RepID=Q2RLX7_MOOTA Length = 190 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 59/94 (62%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+L I G N+ +T+ALR+++ + K+E+Y D ++++ V L V + H + T+ +NG Sbjct: 16 MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + DMY ++D +++KL +Q+ K+K +L + Sbjct: 76 LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNK 109 >UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10 Tax=Clostridiales RepID=Q0B0B5_SYNWW Length = 181 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 57/92 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ I G N+EIT+AL+++ T + +KLE+Y D + + V L +E H + T+ +NG Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + DMY++ID + +KL +Q+ K+K +L Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRL 92 >UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I442_9CLOT Length = 178 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++++ N T AL+E + K +K+++YFD + L V+K + T+ NG Sbjct: 1 MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +DMY +ID ++ KL RQ+ K + KL + Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRR 95 >UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria RepID=Q7W3J9_BORPA Length = 112 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 66/95 (69%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L+I G ++++T A+RE+V K A++ ++FD + V+L VE + H ++ T+ + G + Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IH A +++YAAID L+DK+ RQ+ KHKDK++ H Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSH 95 >UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12 Tax=Clostridia RepID=B0K3A9_THEPX Length = 181 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 1 MQLNITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ++G N + +T+ LR+ V +KL +YF +V VL V+K H ++ T+ G Sbjct: 1 MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A DMY +ID ++DK+ +Q+ KHK KLK Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96 >UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1DDE8_MYXXD Length = 221 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 56/95 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ NIT +++L+E+ K ++ + DR + +VVL +E+ H +D T+H Sbjct: 1 MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + DMYA+ID +DK+ RQL +++DKLK H Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSH 95 >UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98 Tax=Gammaproteobacteria RepID=A1RNM6_SHESW Length = 95 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 50/95 (52%), Positives = 76/95 (80%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ + G+++EITE+LR +V KF+KLE++F++I+ V+VVL VEK+ ++A +++ GGE Sbjct: 1 MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A++E DMYAAID LIDKL RQ+ KHK+KL +H Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95 >UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Anaeromyxobacter RepID=A7HIE3_ANADF Length = 185 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 38/95 (40%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NIT ++E TEAL+ V + +++Y DR ++ + VL VE + H ++ T+ Sbjct: 1 MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + +A DMYA+ID DK+ RQL KHK+KL H Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNH 95 >UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella RepID=B0TYD3_FRAP2 Length = 102 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 45/94 (47%), Positives = 62/94 (65%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG +VE+T+A++ +V K K+ YFD I V+L VEK ++A + V G E Sbjct: 1 MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 A AE +D+YAAID L DKLARQ+ KHK+KL+ Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRD 94 >UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ3_9FIRM Length = 181 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE- 60 + G N+EIT +LRE+V + K+ +YFD + + V+L V K H + T+ + GG Sbjct: 3 TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIL 62 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + DMY +ID +++KL RQ+ K K KL + Sbjct: 63 LRGEESTMDMYTSIDLVVEKLERQIHKQKTKLARR 97 >UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria RepID=B5JSL3_9GAMM Length = 117 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 50/97 (51%), Positives = 74/97 (76%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-- 58 M +N+TG+++++T+ALR++V KF +LE++FD + Q++V+L EK H ++A +HV Sbjct: 1 MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 GE+ A AE +DMYAAIDGL+DKL RQL KHK+KL H Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDH 97 >UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli RepID=Q71WR7_LISMF Length = 187 Score = 116 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ--VYVVLKVEKVTH-TSDATLHVNG 58 + NI G N+E+TE +R++V K KLE+YF V+V LKV + + T+ + Sbjct: 3 KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNAKVEVTIPLPN 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A D+YA+ID ++DKL RQ+ KHK K+ + Sbjct: 63 LVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNR 98 >UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCZ2_9FIRM Length = 180 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G N+E+T AL+++V K + + F + ++ V+++E+ H + T+ +G Sbjct: 1 MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A ++MYA+ID ++K+ RQ+ K+K +L + Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRLMKR 95 >UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIZ4_ACIFE Length = 181 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G N+E+T+AL+++V + + + F + ++ V++VEK HT + T+ +G Sbjct: 1 MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +MYA+ID ++K+ RQ+ K+K +L + Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRLMKR 95 >UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD Length = 180 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ--VYVVLKVEKVTHTSDATLHVNG 58 M+ + G+N+ +T AL+++V K A+L +YFDR +YV + VE + H + T+ VNG Sbjct: 1 MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A + DMYA+ID DKL Q+ ++K+KL + Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRR 97 >UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium RepID=C9XLM7_CLODC Length = 187 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT-LHVNGG 59 MQ+ ++G +++T+ ++ +V K ++LE+Y D ++V V + +K + T + +NG Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A D+YAAID + DKL+RQ+ K+K K+K Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKD 95 >UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGY6_9BACT Length = 177 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 53/85 (62%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT N+E+T+A+R++ K +KLE+YFD I V+L+V+K H + + G Sbjct: 1 MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQL 85 + + +D+YA+ID +DK+ +QL Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85 >UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms RepID=RP5M_RALEH Length = 116 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 63/100 (63%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M I+G++++IT LRE+V K ++ ++FD++ V V+L V+ ++ LH Sbjct: 1 MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G +I A +D+YAAID L+DKL RQ+ ++KD+++ H Sbjct: 61 LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGH 100 >UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUS0_9FIRM Length = 176 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L + G N+++ + L+ KF+KL++YF Q V +K + T+ + G Sbjct: 1 MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A QDM+ +ID +DKL RQ+ K+K +LK+ Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKR 95 >UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Proteobacteria RepID=Q122P6_POLSJ Length = 109 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55 M L I+G+++E+T ALR +VT+K ++ ++FD++ V V+L V+ ++ +H Sbjct: 1 MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V G ++ A + D+YAA+D L DKL RQ+ ++K K K H Sbjct: 61 VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDH 100 >UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ65_DESAH Length = 179 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 63/95 (66%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ ++T ++ ++AL+ +V K + ++ + + VVL VEK+ H ++ TL + + Sbjct: 1 MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHA E ++MY++ID L+DK+A Q+ K+KDK+++H Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRH 95 >UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI17_THEYD Length = 173 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 61/94 (64%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ I G N+++TEAL++++ + K E++ ++ V + EK TH D L V+G Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A + +D+Y+A+D +++KL +Q+ K+K+K++ Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQN 94 >UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1 Length = 207 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58 MQ ++T E TEAL+E+ + ++++YF V+VV+ E+ H D T+ + NG Sbjct: 1 MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + M+++ID + K+ RQ+ ++KDKL+ H Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTH 97 >UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJD6_9BACT Length = 178 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ IT + E+T+A+R++V +KL +YFD+I ++ VL +E + + +LH Sbjct: 1 MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + AE DMY AID ++K+ Q+ K KD++ H Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDH 95 >UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MED7_PARUW Length = 211 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 58/94 (61%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61 + ITG +VEIT++++ + K +K+E++ DRI V V++ ++K+ H + L +I Sbjct: 16 NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKI 75 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A DMYA+ID I +L Q+ ++K K++ H Sbjct: 76 QSQAATPDMYASIDKAIARLEAQIRRYKSKIQDH 109 >UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae RepID=C6M3U2_NEISI Length = 104 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 59/91 (64%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L ITG N ++TEA++ +V+ K ++ ++ V + L VEK+ ++A +H+ G + Sbjct: 1 MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +H A QDMYAAID L+DKL R + KHK+K Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEK 91 >UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2 Length = 193 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLKVEKV-----THTSDATL 54 M+L I GNN+ +TE++ ++V +K K ++F +V V L V H ++ T+ Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + NG I A +++YA+ID + DK+ARQL K+K+K Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK 97 >UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus marinus RepID=A2C0K6_PROM1 Length = 194 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLKVEKV----THTSDATLH 55 M+L I G N+E+T +LR++ K K F + + V L V + T++ T+ Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 NG I A +++YA+ID + +KLARQL K+K++ H Sbjct: 61 ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH 100 >UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FF9 Length = 104 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 40/95 (42%), Positives = 62/95 (65%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG++++IT A+ ++T+KF K+E +F ++ V L VEK H +++TLH+ + Sbjct: 1 MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHA A DMY AI+ LI KL Q+ K+K+K H Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNH 95 >UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales RepID=RAFY_STRP6 Length = 182 Score = 106 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 4/98 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTH-TSDATLHVNG 58 + +I G N+E+TEA+R++V +K K+E+YF D+ V LKV + + T+ ++ Sbjct: 3 KFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDS 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL-KQH 95 + A QDMY +ID ++DK+ RQ+ K+K K+ K+H Sbjct: 63 VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH 100 >UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB Length = 209 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 6/100 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLKVEKVT-----HTSDATL 54 M+L I G N++IT+ +R ++ K + +F IN+V V L V + T++ T+ Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 VNG I A +++YA+ID + DK+AR+L K K+K + Sbjct: 61 FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEKRQD 100 >UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSN2_SYNAS Length = 209 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 55/93 (59%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++++T N E ++V + +L +Y D V+VVL VEK + ++ ++ NG Sbjct: 31 MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + E +DM+ AID ++K+ RQL KHK+K++ Sbjct: 91 LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIR 123 >UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes RepID=D2BPB3_LACLK Length = 185 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTH-TSDATLHVNG 58 + NI G NVE+T+A+R +V K KL++YF+ YV LKV + TL Sbjct: 3 KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKN 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A QDMY++ID + +KL RQ+ K+K ++ + Sbjct: 63 VTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNR 98 >UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA Length = 212 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 57/94 (60%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61 + +TG +V +TEA++ + K +K+++ RI V + + ++K+ H D L V+ +I Sbjct: 16 NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKI 75 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A DMY +ID +DKL RQL K+K +++ H Sbjct: 76 KSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDH 109 >UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ Length = 192 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58 + I G+N+ IT+A+R ++ K KLE+YF+ + +KV + T + T+ + Sbjct: 3 RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKN 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A D+YA ID + KL RQ+ K+K ++ + Sbjct: 63 VTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNR 98 >UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B9Y7S1_9FIRM Length = 178 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M+ I G NV ITEA+R+ + K + L++Y D + VV++ +T + T+ Sbjct: 1 MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + E +D+YAAID IDKL Q+ + K +L + Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRR 97 >UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria RepID=A5CWW3_VESOH Length = 102 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 68/95 (71%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQLNI+G++++ITEA+++ K K++ +F+++ + ++L+V+K ++A +HV+G + Sbjct: 1 MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A AE DMY +ID +++KL Q+ KHK+KL H Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNH 95 >UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia sp. EuI1c RepID=D1V7P2_9ACTO Length = 283 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + + G + + E R V K AKLE+Y ++ +V V L E + T+ Sbjct: 1 MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A D Y+A+DG KLA +L + ++ H Sbjct: 61 YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDH 101 >UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Fusobacteriaceae RepID=C7N909_LEPBD Length = 106 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 M++ I+G ++IT+A++ + K +++ +Y D I ++ VVL VE H +D + Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +G +I AE +D+YAAID L D+L RQ+ K+K++ K H Sbjct: 61 ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDH 100 >UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae RepID=Q5SIS0_THET8 Length = 186 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%) Query: 1 MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATL 54 M + + G N+EIT+A+R++V K A+L++Y D VVL + H ++ + Sbjct: 1 MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL---KQH 95 + GG + E D+YAAID +D+L Q+ + +++ K+H Sbjct: 61 DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRH 104 >UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2 Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV Length = 96 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59 MQ NITG +++I+ ALRE + +LEQ + I V L++ K ++ TL + Sbjct: 1 MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +IHA +DMYAAID L +KL +QL + K+KL++ Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96 >UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3 Tax=Psychrobacter RepID=A5WCB7_PSYWF Length = 132 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 10/104 (9%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----------KVTHTS 50 M ++ITG+++ IT+A+++ V K +K+E++FD+I + V+L ++ K H + Sbjct: 1 MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +A + V G E+ + DMY AI + DKL RQ+ K+K ++ + Sbjct: 61 EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRIDR 104 >UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y948_COPPD Length = 190 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 4/95 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57 ++++ G N+E+T A+++++ K ++ +YFD I V VV++ E+ + TL N Sbjct: 8 KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDAN 67 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 G I A E D+YAAID DKL + + K+KL Sbjct: 68 GRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKL 102 >UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae RepID=C8P3U4_ERYRH Length = 180 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M + I G NVEIT+A++E V K L +YF D + VV+ V + T+ Sbjct: 1 MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G + A +D YAA+D ++DKL Q+ +HK K+ + Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISR 96 >UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium RepID=C9XIR4_CLODC Length = 183 Score = 103 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATL-HVNGG 59 M + I+G +E+T+A++ + K +KL+ Y V V + K + T+ VNG Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A +++Y AID + DKL++QL K+K +L+ Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQD 95 >UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria RepID=RAIA_ECO57 Length = 113 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 56/91 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M +NIT +EIT A+R+ V + AKLE++ + +++L E +DAT++ G Sbjct: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + AS + +DMY AI+ LI+KL RQL K + K Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 >UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BX30_HYPNA Length = 198 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 MQ+ ITG ++E+ EALR + + +YF R V + + D +H+ G Sbjct: 1 MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + +S + D YAA++ ++K+ +++ ++K +LK H Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH 97 >UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium RepID=C3WBJ3_FUSMR Length = 183 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56 M++ I G + IT+A++ + K ++E+Y D I ++ + L K HT++ ++ Sbjct: 1 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G + AS D+YAAIDG+ D L QL KHKDK++ Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIR 97 >UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEC8_9ACTO Length = 214 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS------DATL 54 M + + N EI RE+V K +K+ Q++ R +V V L E+ + + T+ Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A+ D YAA+D KL +L + +D++K H Sbjct: 61 YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDH 101 >UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46 Tax=Bacteria RepID=Q28VX1_JANSC Length = 235 Score = 101 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M+ I+G +EI +AL+ V + ++Y +R VV + T+H++ G Sbjct: 45 MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A A ++YAA + DKL +QL ++K +LK H Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDH 141 >UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21 Tax=Betaproteobacteria RepID=A9BRS9_DELAS Length = 119 Score = 101 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M L I+G+++E+T +LR +V AK ++ ++FD++ V V+L V + TL Sbjct: 1 MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 V G ++ D+YAA+D L DKL R + ++K + Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTR 96 >UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM Length = 209 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + + ++++ ALRE + + + +YF+R + YV + E + ++H+ G Sbjct: 1 MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60 Query: 60 E-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A E D Y A + +++L ++L ++K KLK H Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNH 97 >UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FNI8_SACEN Length = 231 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M + + G NVE+ + R+ V K +LE+Y + + V L E+ + TL Sbjct: 1 MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D YAA+D KL +L + D+ K H Sbjct: 61 KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH 101 >UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Verrucomicrobia RepID=B4D5R5_9BACT Length = 191 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 2/95 (2%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGGEI 61 + +TG +V +T+ ++++ T++ L + RI + +V+L VEK H ++ LH N I Sbjct: 10 VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHITI 69 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDK-LKQH 95 AS E DMYA+IDG+ K+A+Q+ K+K K L+ H Sbjct: 70 EASHETDDMYASIDGVAAKIAQQMRKYKTKILRNH 104 >UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSN7_9PROT Length = 202 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M++++ G +++ + LR+ + + + +YF + V L + +D +H+ G Sbjct: 10 MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A D YAA +++ +QL ++K +L+ H Sbjct: 70 ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDH 106 >UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae RepID=B0U6N0_XYLFM Length = 105 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 56/95 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + G +E+T ALRE+V K +L+++F ++ L + K+ H AT+++ G Sbjct: 1 MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++A+A MYAAID + DKL R + KHK+K H Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDH 95 >UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VDW4_9CLOT Length = 170 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 45/85 (52%) Query: 8 NNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEG 67 +++TE L+ V K +KLE+YF V VEK + T+ + G I A Sbjct: 3 KIIDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVS 62 Query: 68 QDMYAAIDGLIDKLARQLTKHKDKL 92 DMY +ID +++ + RQ+ +HK KL Sbjct: 63 DDMYVSIDLVLEVIERQVNRHKKKL 87 >UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria RepID=RAIA_HAEIN Length = 107 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LNIT ++IT A+RE + + AKL ++ ++ + VL + +A++ G Sbjct: 1 MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + ASA DMY AI+ + +KL RQL K + K + Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESR 95 >UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation protein family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G806_SORC5 Length = 122 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 49/86 (56%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT ++ T+A++ + K AKL+++ + V L VE +TH +D L Sbjct: 1 MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLT 86 HA+ G+DMYA+ID + DKL RQ+ Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIR 86 >UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus RepID=B5YF17_DICT6 Length = 179 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55 MQ+N NV IT+ L+++ K ++L ++FD I + V+ E H + T+ Sbjct: 1 MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 NG I AS QD +ID ++DKL QL + K+KL Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKL 97 >UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVF2_9PROT Length = 107 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 42/95 (44%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG N+EITEAL + KF K+ ++F+ I V +LK E H ++ LH+ E Sbjct: 1 MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + A G DMY ID LI K+ RQ+ K K+K K H Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDH 95 >UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE Length = 191 Score = 99.7 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTH-----TSDATL 54 M + +TG + +T+ALRE+ K + D +VL VEK + TL Sbjct: 1 MSITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPANPRPAVCEVTL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I +DMYAAID K+ RQL K+K K+ Sbjct: 61 RTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDR 101 >UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15 Tax=Desulfovibrionales RepID=Q310S7_DESDG Length = 190 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVTHTSDATLHVNG 58 M + T N E ++ L+++ +F KL ++ + ++ V+L V+K H ++ G Sbjct: 11 MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + A + +DMYA ID ++DKL Q+ KH +K K Sbjct: 71 LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105 >UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes RepID=Y1964_STAS1 Length = 190 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58 + I G N+ IT+A+R ++ K KLE+YF+ + +KV + + T+ + Sbjct: 3 RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLKK 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 + A D+YA ID + +KL RQ+ K+K Sbjct: 63 VTLRAEERNDDLYAGIDLINNKLERQVRKYKT 94 >UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae RepID=B4RCJ5_PHEZH Length = 222 Score = 99.3 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M++ +TG +V++ EALR V + + +E+YFDR VV+ E D + + G Sbjct: 13 MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ G D + A D + K+ +++ ++K +LK H Sbjct: 73 QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDH 109 >UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD Length = 189 Score = 98.1 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR---INQVYVVLKVEKVTHTS-----DA 52 M++ + G N+ +T++L + K ++ ++FD + + V L E+ + + Sbjct: 1 MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60 Query: 53 TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 TL +NG + A +DMYA+ID + DKL RQ+ +++ + Sbjct: 61 TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDR 103 >UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ2_ACHLI Length = 185 Score = 98.1 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 1 MQLNITGNN-VEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57 M+ I G N T+A++ +V K K+ FD I+ V VVL+V K + T+ Sbjct: 1 MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + DMYAAID +DKL Q+ +HK K++ H Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHH 98 >UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ Length = 178 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQ--YFDRINQVYVVLKVE-KVTHTSDATLHVN 57 M+ ITG VEI+EA++ ++ + K+++ Y D + V ++ + K + +++ Sbjct: 1 MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I+ D+Y AID D L +Q+ + K++LK H Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH 98 >UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT Length = 200 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS--DATLHVNGGEIHASAEG 67 +E ++ALR + + AK+++YF +V VEK+ H + D TL NG ++H+S + Sbjct: 1 MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLR-NGLQLHSSEKT 59 Query: 68 QDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + MY++ID + K+ RQ+ ++KD++ H Sbjct: 60 ESMYSSIDMALAKMERQVRRYKDRITNH 87 >UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEK7_9RHIZ Length = 198 Score = 96.2 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M + ITG N++ A + + + K L +Y DR+ +V L+ E+ + ++ + +G Sbjct: 1 MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A EG D Y ++D +L ++ ++K ++K H Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNH 97 >UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQP5_9BACE Length = 181 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 45/95 (47%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ T V + + + K KL++YF + +V VEK + + T+ G Sbjct: 1 MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + DM+A ID + + RQL K+K +L++ Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKR 95 >UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii RepID=A9KDT2_COXBN Length = 96 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 54/95 (56%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + +TG V+I+ ALRE K +++ D I+ ++++ + K+ DA + + G Sbjct: 1 MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I+A AE DMY +D L+ KL QL+K+K K H Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDH 95 >UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO Length = 284 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVT---------HTS 50 ++ + G ++EIT+++RE+ K K +FD+ + +V V + Sbjct: 81 KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKT 140 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + T++ G I + E D+YA+ID + DKL R+L K K+K Sbjct: 141 EVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEK 181 >UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQU2_AKKM8 Length = 197 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEI 61 + ITG +VE+T+A+REFVT K + F RI +V V+L V++ S L + I Sbjct: 10 ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHITI 69 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 AS EG DMYA ID I K+ R++ KHK +L Sbjct: 70 DASTEGTDMYACIDETITKIMRRMRKHKTRL 100 >UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF930 Length = 129 Score = 95.0 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LNI+ ++IT A+R + + AKLE+Y ++ + +L + + +AT+ G+ Sbjct: 36 MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + A AE +D+Y AI + KL +L K K+K Sbjct: 96 LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEK 126 >UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5 Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5 Length = 196 Score = 95.0 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M + ++G ++ + +ALR V + + L +YFD ++ L + +D LH++ G Sbjct: 1 MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A + D YA+ D + ++ ++L ++K KLK Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDR 97 >UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4 Tax=Actinomycetaceae RepID=C2BSF1_9ACTO Length = 219 Score = 94.7 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS------DATL 54 M++ + N EI RE++ K AK+EQ R +V V L EK + + T+ Sbjct: 13 MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D YAA+D KL +L + +D+ K H Sbjct: 73 LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH 113 >UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18 Tax=Corynebacterineae RepID=A1T5Y3_MYCVP Length = 250 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55 ++ +TG NVE+ + R +V K ++LE++ + V L EK + T Sbjct: 48 EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQHVEITAK 107 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A YAA++ + KL +L K KD+ K H Sbjct: 108 GRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH 147 >UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium RepID=A5TX76_FUSNP Length = 181 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56 M+L+I G + +T+A+R++ K +K+E++ D I ++ L K H ++ ++ Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +G + A+A D+YA+ID +D + L KHK+K + Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSR 98 >UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna RepID=B0S0M8_FINM2 Length = 179 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59 M+LN ++++T+ L++ +K KL++YF Q VV K EK + T+ ++ G Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +D+ AID + D LARQ+ KHK KL++ Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKR 96 >UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae RepID=A9WMP6_RENSM Length = 267 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M+ I+G N+ +++ RE+ T K +KLE +++ +V + + T + T+ Sbjct: 26 MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I A A D +AA D +KL +L + KDK K H Sbjct: 86 QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLH 126 >UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A8RDK2_9FIRM Length = 177 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M++NI G N+ +T AL E + K LE+YF D VV++V + T+ Sbjct: 1 MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + D+YAAID IDKL Q+ + K +L + Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTR 96 >UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ Length = 207 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 6/93 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV---- 56 M++ +TG N E+T+ R V K KLE++ RI +V V +K E+ +D + + Sbjct: 1 MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60 Query: 57 --NGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87 G I A A D AA+D +DK+A Q+ + Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRR 93 >UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH Length = 111 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 49/82 (59%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ +T N+E +E L++FV+ K K ++ FD + V+L VEK + ++ L + Sbjct: 1 MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLA 82 I E +DMYAAID ++DK+ Sbjct: 61 IIGKEETEDMYAAIDLVMDKIE 82 >UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Psychromonas RepID=A1SRN9_PSYIN Length = 136 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 49/88 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ IT + IT+ +R V +F KLE+ + +V++ E +AT++V + Sbjct: 1 MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKH 88 I A A+ D+Y AI L KL RQLTK+ Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKY 88 >UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Gammaproteobacteria RepID=A6W0C2_MARMS Length = 105 Score = 93.9 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 59/89 (66%), Gaps = 1/89 (1%) Query: 4 NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHA 63 I+G+++++T A+++ + K +K+ + D+I V V L + + ++A +H+ G EI A Sbjct: 5 KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFA 64 Query: 64 SAEGQD-MYAAIDGLIDKLARQLTKHKDK 91 SA +D ++ AID ++DKLA+Q+ KHK K Sbjct: 65 SASSEDRLFHAIDDMVDKLAKQIDKHKTK 93 >UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales RepID=RP5M_BRAJA Length = 203 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M L I+G +V + EALR V+ + + L +YFD ++ L + +D LH++ G Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A + D YA+ D + + ++L ++K +LK Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDR 97 >UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM Length = 128 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVNGG 59 M IT +++T + E + K+AKLE++ + +V + +K +A++H+ G Sbjct: 1 MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ A +EG+D+YAAI L KL RQL K+ +K H Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH 96 >UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MPR7_9FIRM Length = 211 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M +NIT +++T+A ++ T K KL+++F V L +K T + T+ G Sbjct: 38 MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + + D A D ID++ RQ+ K+K ++++ Sbjct: 98 IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEK 132 >UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4 Tax=Acidithiobacillus RepID=RP5M_THIFE Length = 78 Score = 92.7 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK---VEKVTHTSDATLHVN 57 MQ+ ITG ++++T++++ + K +L +YFD ++ VVLK EK+++ D T++ Sbjct: 1 MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60 Query: 58 GGEIHASAEGQDMYAAID 75 G HA DMY ID Sbjct: 61 GHVFHAEVHDADMYTGID 78 >UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT Length = 110 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 53/88 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT +++T ++RE+V +KF KLE+ + +V + E + +A + + G+ Sbjct: 1 MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKH 88 + A AE +D++AAI+ L KL RQ+ +H Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRH 88 >UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21 Tax=Shewanella RepID=A3QBU6_SHELP Length = 124 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 + IT + E+T +RE + ++ KL ++ ++ +V++ EK +A++ + + Sbjct: 2 IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61 Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 A A+ +D+YAAI+ + KL +QL + K Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHK 90 >UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus RepID=C7HV18_9FIRM Length = 177 Score = 92.3 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LNI G N+ + E+L+E KF +L++YF++ ++ + E ++T+ + GG Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60 Query: 61 I-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A + ID +ID L RQ+ K K KL++ Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQR 95 >UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Sulfurihydrogenibium RepID=B2V794_SULSY Length = 187 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 11/102 (10%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF------DRINQVYVVLKVEKVTHT--SDA 52 MQ+ G N+EIT+ ++ + K +L+ Y +V VV EK H D Sbjct: 1 MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60 Query: 53 TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +++N GG IHA E D+Y+AID +ID++ RQL + K + Sbjct: 61 DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQR 102 >UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP Length = 178 Score = 91.6 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58 M++ IT N+++T A+++F + K+E+Y D++ + L V+K + +HV N Sbjct: 1 MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A+A D+Y AID K QL K K+K K Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSR 97 >UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IJQ7_AZOC5 Length = 198 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M L ++G N+++ EALR+ + + +++ +YFD + + E + S+ LH++ G Sbjct: 1 MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A Q+ A D ++K+ ++L ++K +LK Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKGR 97 >UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae RepID=C9M512_9BACT Length = 197 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-TSDATLHVNGG 59 M + T +N +I ++E++ K ++E++F RI + V +K +K T + T NG Sbjct: 16 MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + D+ A D + L R++ +HK+ L Sbjct: 76 VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYLIDR 111 >UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LB60_RHOVA Length = 199 Score = 90.4 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 54/97 (55%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M + +TG N+++ E+LRE+ + L++Y R + ++ S +H+ +G Sbjct: 1 MTIKVTGKNIDLGESLREYALNRVESALDKYSGRSVSGQISVEKNTDGFFSHCAIHLESG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ ++ G D YA++D +++L ++L ++K ++ H Sbjct: 61 LDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH 97 >UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04A0 Length = 177 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 54/93 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ ++ N E+T+ + + + ++LE+YF+ + V + VEK T + ++ +G Sbjct: 1 MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + A EG++MY +D ++ L RQ+ + ++KL+ Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLR 93 >UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Synergistaceae RepID=D1B9M7_THEAS Length = 180 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + NVE+ ++++ + K KLE++FDRI V + ++ + + T ++NG Sbjct: 1 MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + D+ A + + + RQ+ +HKD L Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDMLVDR 95 >UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2 Tax=Alteromonadales RepID=Q21ND3_SACD2 Length = 118 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+N++G++VE+T+A+R KF K+ ++ ++ V V L VEK +AT G Sbjct: 1 MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHK--DKLKQH 95 + + D+YAAI + KL L+ K K H Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRKGITKANLH 97 >UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS Length = 198 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV-----VLKVEKVTHTSDATLH 55 M L + N ++++ R+ + K ++L++Y DRI++V V + + E H T+ Sbjct: 6 MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65 Query: 56 VNGGEI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + G + A ++YAAID + D L RQ+ ++KDK Sbjct: 66 GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH 103 >UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXY8_9BACT Length = 119 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NGG 59 + I +++ITEA+R + K K++++F+ I V V L + +H + ++V G Sbjct: 3 NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGP 62 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A A DMY +ID ++DK+ QL KHK K++ Sbjct: 63 TIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIES 97 >UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter RepID=RP5M_ACIGB Length = 113 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----------THTS 50 MQ+ I G+++ IT A+ E + +F ++ ++ D++N + V L + H + Sbjct: 1 MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89 +A + + G E+ A A DMY AI L DKL RQL KH+ Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99 >UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TA00_PHYPA Length = 297 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-------HTSDAT 53 +L I G ++E+T+A++++V K + +V V + V + T Sbjct: 89 RLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGRGERLQRCEVT 148 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L G + A E + MYA+ID + D ++R+L K K+K H Sbjct: 149 LFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGH 191 >UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VXE1_9CLOT Length = 183 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGG 59 M++ ITG V + + +E V K K + F V + VEK T + T+ +G Sbjct: 1 MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + +M A+D +++ L RQ+ K+K KL++ Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEK 95 >UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli RepID=A8PQ11_9COXI Length = 111 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 65/97 (67%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ IT + +++T+AL++++ KF +LE+ + + +++ L +E + + A +H +G E Sbjct: 1 MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKH--KDKLKQH 95 +A A+ +++Y AID LIDK+ +Q+ KH K K K+H Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKEKRH 97 >UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PYC3_VIBCH Length = 78 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 33/68 (48%), Positives = 55/68 (80%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NI G+++++T++++++V +KF KLE++FD IN V V+L+VEK+ ++ATLHVN E Sbjct: 1 MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60 Query: 61 IHASAEGQ 68 IHA A+ + Sbjct: 61 IHAHADDE 68 >UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QU53_PERMH Length = 188 Score = 87.7 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI------NQVYVVLKVEKVTHTSDATL 54 M++ G N+++TE ++ + K +L+ Y I +V V EK H + + Sbjct: 1 MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60 Query: 55 HV-----NGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87 + GG IHA E D+Y+AID +ID++ RQL + Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVR 98 >UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Actinomycetales RepID=D1BCP0_SANKS Length = 220 Score = 87.7 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV------THTSDATL 54 M++ + G + E+ + R K AK+EQ +V V + E + T+ Sbjct: 1 MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRQSGIRERVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D + A+D ++KL +L + D+ K Sbjct: 61 RDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKNR 101 >UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0Q0_9FIRM Length = 176 Score = 87.3 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 52/93 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++NI+ N ++ L+E + KF+KL++YF ++++ K + +A L G Sbjct: 1 MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + +D Y A+D + KL+RQ++K K KLK Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLK 93 >UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PW5_SOLUE Length = 181 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD---RINQVYVVLKVEKVTHTSDATLHVN 57 M++ TG VE+ A + + A+FAK+ + D R +V+V+L +E+ H ++AT++ Sbjct: 1 MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 ++ D++ AIDG +KL +Q K + K + Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFRD 97 >UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QBC3_CATAD Length = 237 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + + + E+T+ R V K AK+E+ + + VVL EK + TL Sbjct: 1 MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60 Query: 55 HVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I A A D Y+A+D KL QL + KD+ K H Sbjct: 61 DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIH 102 >UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=Rhizobiales RepID=RP5M_RHIME Length = 190 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M + ++G ++EI ++ R + + + + +YFD V ++ ++D LH++ G Sbjct: 1 MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A+ + + +A D +++ ++L ++K KLK H Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH 97 >UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPI1_PARL1 Length = 193 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 MQ+ ++G+++++ +ALR T + + +YFDR V L + +D + H+ +G Sbjct: 1 MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLA 82 ++A ++YA+ + +++L Sbjct: 61 LRVNAQGTANEVYASFEAALERLE 84 >UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM Length = 112 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT NV+ +++++E V ++ ++ I +V+L+ ++AT+HV G + Sbjct: 1 MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 I A A ++YAA+D L DK+ RQL K K Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQK 91 >UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8 Length = 99 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M + I + + T L F+ K +KLEQYFD I V LKV K + L V Sbjct: 1 MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 GE A AID ++ L +QL K K+K++ Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIR 97 >UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LMC5_PICSI Length = 321 Score = 85.4 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L I G N ++T+A++ ++ K ++++ + + +V V L + + T Sbjct: 89 RLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVGKGPKIRRCEVT 148 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L G + A E + +YA+ID + D + R+L K K+K H Sbjct: 149 LFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKDGGH 191 >UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium RepID=A9W5P1_METEP Length = 202 Score = 85.0 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%) Query: 3 LNITGNNVEITEALREFVTAKFAK-LEQYFDRINQV----YVVLKVEKVTHTSDATLH-V 56 L +TG+ +++ ALR V + A L +Y D +V L+ + + +D LH V Sbjct: 4 LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + AS D++A+ + DKL ++L ++K KLK H Sbjct: 64 TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDH 102 >UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29 Tax=Actinomycetales RepID=C7MXY7_SACVD Length = 226 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M + I G NVE+ E R V K A+LE+Y ++ V L E + T Sbjct: 1 MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLA 82 G + A A D Y A+D I KL Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88 >UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XRD3_9CAUL Length = 237 Score = 84.6 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKF-AKLEQYFDRINQ-VYVVLKVEKVTHTSDATLHVNG 58 MQ+ ++G +V++ EAL ++ + + +YF+R + VV+ + D + + Sbjct: 19 MQVQVSGKHVDVGEALGSRISQELQEGVGKYFERGGENAEVVVSKDGYGFKVDCWVRLAS 78 Query: 59 GE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G+ + + G D +AA ++KL +++ ++K +LK H Sbjct: 79 GQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDH 116 >UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD Length = 196 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 8/102 (7%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55 + I+G V I+EALR V K + FD VVL+V+K T++ T+ Sbjct: 3 DIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTVF 62 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL--KQH 95 V + +A DMYAAID DK++RQL K+K K+ ++H Sbjct: 63 VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVERRH 104 >UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRA6_9PROT Length = 197 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ITG +++ AL++ VT + +E+YFDR + V + E + + TLH+ G Sbjct: 1 MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60 Query: 60 EIHA-SAEGQDMYAAIDGLIDKLA 82 A +GQD Y A D + KL Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLE 84 >UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR Length = 256 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M NI G NV IT+ +RE + K ++ + DRI ++ +T T+ Sbjct: 1 MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 H + +D+Y AID + K+ R++ K K++ Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKER 91 >UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae RepID=A1ZNT3_9SPHI Length = 100 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLH 55 M+L + L EF+ K KLE ++DRI V L++EK H + L+ Sbjct: 1 MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + G + AA D ++ L RQL KHK+K Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96 >UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO Length = 199 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK----LEQYFDRINQVYVVLKVEKVTHTSDATLHV 56 M+ + VE+TEAL ++ + +K L+++ D ++ V + E+ + + T H+ Sbjct: 1 MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60 Query: 57 N--GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 N I D+Y AID + D L R++ K K++L++ Sbjct: 61 NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQE 100 >UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons RepID=RR30_SPIOL Length = 302 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L + G N+E+++ +R V K K + ++ + +V V L + T Sbjct: 76 KLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVT 135 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L G I A + + +Y++ID + + R+L K KDK+ H Sbjct: 136 LFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDH 178 >UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides RepID=D2EW39_9BACE Length = 99 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M++ I + + +E L+ FV K AKLE+++D I +V V LKV K + + V Sbjct: 1 MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 GE +A+ A+D ++ L +QL K+K+K + Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRS 98 >UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD Length = 179 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LN+ N +T+ +R KF +L++YF ++ V E + T ++ G Sbjct: 1 MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60 Query: 61 IHASAEGQDMY-AAIDGLIDKLARQLTKHKDKL 92 I S + Y AID ID L RQ+ K+K KL Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKL 93 >UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Actinobacteridae RepID=A6WEN5_KINRD Length = 256 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M++ +TG + ++ E R V K K+ Q+ R ++ V L E + T+ Sbjct: 1 MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRQASSSERVEITV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81 G + A A D YAA+D KL Sbjct: 61 RDKGPVVRAEACADDPYAALDLATTKL 87 >UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYI7_METI4 Length = 115 Score = 83.1 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 MQ+ I+ V++T+AL + +KF KL + +RI V + E A Sbjct: 1 MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 L++ G +I A G D+Y A+D ++D+LARQL K K L Sbjct: 61 LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTD 101 >UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33 Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN Length = 122 Score = 82.7 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 49/93 (52%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++NI+G++V++T++++E + KFAK+ +F + + +++ E + + + G Sbjct: 1 MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 I A MY AI KL L K +LK Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLK 93 >UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Alphaproteobacteria RepID=B0T677_CAUSK Length = 210 Score = 82.7 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 MQ+ I+G +V++ EALR V+ + + +YFDR VV+ E D ++ + G Sbjct: 1 MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ + G D +AA D + K+ ++ ++K +LK H Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSH 97 >UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3T1_SPHTD Length = 194 Score = 82.7 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55 M + I N+ +T+AL+E++ ++ +L++ ++ ++ E+ + T+ Sbjct: 1 MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTGGEQMVAQFTIA 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + + +D++ AID I+++ RQ+ + +DK Sbjct: 61 TKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDK 96 >UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class) RepID=Q6AGI3_LEIXX Length = 232 Score = 82.3 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK-------VEKVTHTSDAT 53 M +NI G N+ IT+ RE+ K K+ +R + + + + T Sbjct: 1 MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L + + A G D YAA D + KL ++ + KD+ K H Sbjct: 61 LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVH 102 >UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN Length = 195 Score = 82.3 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55 + I+G V +++ALR V K + FD + VVL+V+K + + T+ Sbjct: 3 DIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTVF 62 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 V + + G DMY AID +K+ RQL K+K ++ Sbjct: 63 VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRI 99 >UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia RepID=C4K0H4_RICPU Length = 192 Score = 81.9 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M ++++G ++ I L+E+ + ++ ++YF I + + E + D + G Sbjct: 1 MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 ---EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + ++ D+Y A D + KL +QL K+K K K H Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNH 99 >UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT Length = 178 Score = 81.9 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVNG 58 M+ NI ++ +T+ ++E + K AK+ + D + V + E+ + + T H+ G Sbjct: 1 MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G D Y ++ + + L R++ ++K++ + Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMR 97 >UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N462_9BACT Length = 114 Score = 81.9 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL--EQYFDRINQVYVVLKVEKVTHTSDATLHVNG 58 M++++TG EIT ++RE+V ++ L ++ D + VV+ +K + + ++ Sbjct: 1 MKISVTGRQFEITPSIREYVESRIQALVEDKALD-FSSAKVVMDYQKNSFKTTLVVNCKY 59 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A E D+Y + D + K+ QL ++K++ H Sbjct: 60 HVVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSH 96 >UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12 Tax=Flavobacteria RepID=A0M3Z9_GRAFK Length = 100 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M++N+ N + L +F K KL+ YFD+I V KV+ K ++ L V Sbjct: 1 MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 GG+I A +D + L RQL K K+K+ H Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99 >UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6 Tax=Leptospira RepID=B0SB82_LEPBA Length = 95 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 49/95 (51%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++N T +++ +EA + K ++ ++ +I V + ++ L+ +G Sbjct: 1 MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +A + +D+Y IDGL DK+ Q +KH DK QH Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95 >UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG17_9BACT Length = 123 Score = 81.2 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 7/99 (7%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDATLH 55 L ITG ++++TEA+++ V K +L ++ +RI +V V L+ + + + Sbjct: 8 DLIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIE 67 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +NG ++ S D Y A+D L+DKL R L + + +L++ Sbjct: 68 INGPTMNVSVSDPDCYKAVDLLVDKLDRMLRR-RSRLQR 105 >UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes RepID=C6Y270_PEDHD Length = 115 Score = 81.2 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M++ + + + L +F+ K KL+Q+FD+I V LK+E V S+ L V Sbjct: 1 MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 GG + A + + A D I+ L +Q+TKHKDK + Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTR 97 >UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF Length = 234 Score = 81.2 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD------ATLH 55 Q++ITG NVE+ E E V K AK+E+ + +V L+ E +D T Sbjct: 25 QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G A A+ YAA++ + K+ R L K K + Sbjct: 85 GKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRS 122 >UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT Length = 119 Score = 81.2 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 48/87 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ++G N+++TEAL++ V + + + + ++N+ VVL + LH N Sbjct: 1 MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87 + A AE DMY +I +D+L RQL K Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEK 87 >UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria RepID=B6EGD2_ALISL Length = 120 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLE--QYFDRINQVYVVLKVEKVTHTSDATLHVNG 58 M++ ITGNN++IT +RE + KF KLE ++ D I + V K H +A + + G Sbjct: 1 MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G++ ASAE +D++ I + KL RQL K + K + Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEAR 97 >UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation protein n=4 Tax=Actinomycetales RepID=Q2JEZ4_FRASC Length = 267 Score = 80.4 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + + G + + E R V AK AKLE+ I +V V L E+ + T+ Sbjct: 1 MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRLSDVCDRVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A D YAA+D KLA +L + D+ +H Sbjct: 61 YSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRH 101 >UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTB3_BACTU Length = 181 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L +TG +V +TE ++ + K L ++ V V ++VEK T ++ NG Sbjct: 4 MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEK-RLTISVSVPFNGEL 62 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 I+A ++ +D Y A+D ++DK+ RQ+T KD Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKD 92 >UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=bacterium Ellin514 RepID=B9XGM0_9BACT Length = 117 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 M+L +T +N+ +T+A+ + ++ KLE + V L + L Sbjct: 1 MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V G ++ A DMYAAID + K+ +Q+ K + K K Sbjct: 61 VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKAR 100 >UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales RepID=C6II14_9BACE Length = 123 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M + I + + +E L+ F+ K +KLE+Y++ I +V V LKV K + + + Sbjct: 25 MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 GE +AS A+D ++ L +QL K+K+K + Sbjct: 85 PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRS 122 >UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales RepID=A8J8B2_CHLRE Length = 286 Score = 79.6 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK--------VEKVTHTSDA 52 ++ I G + +T+A++ +V K AK + + + +V V L K + Sbjct: 71 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 130 Query: 53 TLH-VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 T++ + G + ++YAAID + DK+ +L K K+K Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 170 >UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales RepID=D0LFC2_GORB4 Length = 270 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55 + +G NVEI + R +V K A+LE++ I + V L E+ + T Sbjct: 62 TVVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITAT 121 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQ 84 G + A A G++ YAA++G +DKL + Sbjct: 122 GKGPIVRAQACGENFYAALEGSLDKLESR 150 >UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487B8_COLP3 Length = 111 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ I+G++VEITE +++ + KFAK+ +++ I + + VE + T G + Sbjct: 1 MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + +A + +Y AI + KL L K L Sbjct: 61 VTVNASDKQLYVAIAKVAKKLQSALAHRKGVLS 93 >UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Aquificaceae RepID=B4U9J0_HYDS0 Length = 200 Score = 79.2 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 18/109 (16%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF----DRINQVYVVLKVEKVTH-------- 48 MQ+ G + EITE LR FV +K +K ++ + ++ V + + H Sbjct: 1 MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60 Query: 49 ---TSDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 D +++ GG +HA E +D+Y AID ++D++ RQL K K++ Sbjct: 61 SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKER 109 >UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00W70_OSTTA Length = 184 Score = 78.9 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 10/101 (9%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDA 52 ++ + G ++EIT A+ E+V +K + + D I +V V V H ++ Sbjct: 51 KMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTEV 110 Query: 53 TL-HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 T+ G +HA G+++YA ID D + R + KHK+K Sbjct: 111 TVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKH 151 >UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP Length = 127 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 5/98 (5%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLHV 56 ++ + G + +T+A++E + KF+ L ++ D I ++ V + + + +T+ A + + Sbjct: 12 KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEI 71 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G ++ ASAEG+D Y ID L++KL RQL + + K Sbjct: 72 GGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKD 109 >UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group RepID=Q9ZD30_RICPR Length = 143 Score = 78.5 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M ++++G ++ I L+E+ K + +++Y I + + E + D + G Sbjct: 1 MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 60 ---EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I ++ D+Y A D + KL +QL K K K K H Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNH 99 >UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK5_FIBSS Length = 105 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59 M + + + + L++ + + KL +++ I V+L E + + ++++ G Sbjct: 1 MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEVEHQRHCEISVNITGS 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I ASA+ ++M A+D ++++ QL K DK H Sbjct: 61 VIVASADEENMGKAVDVTLERIKVQLKKANDKQNDH 96 >UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ2_9BACT Length = 114 Score = 77.3 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD----ATLHV 56 M+L I +TE L+ F+ KFAK+ ++ + I+ V+LKV K ++ ++V Sbjct: 1 MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G H +D ++ + RQL+K+K+K + Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQR 97 >UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPK4_BDEBA Length = 116 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 45/95 (47%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LN T +++ +E+L + + A++ ++ R V K + +++ Sbjct: 1 MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKY 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A+A G D+Y A+D +K+ +Q K + K H Sbjct: 61 FKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDH 95 >UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZQ7_9FLAO Length = 100 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 M +N +V +E L E VT K KL+ +D I + V K E K + L Sbjct: 1 MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMICEIKLS 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + AS+ + AI ID + RQL K K+K+ H Sbjct: 61 APGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100 >UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFI2_KYTSD Length = 245 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 MQ+ +TG ++T+ R V K +L I++ V+ E + T Sbjct: 1 MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRRSEDAERIEITC 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 H + A A + Y A+D ++ K+ ++ + D+ K H Sbjct: 61 HDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVH 101 >UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD Length = 125 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS------DATL 54 M+L + + + L F+ K KL+ ++DRI V LK+ K +T + L Sbjct: 1 MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +V GG + +G A D ID L Q+ K K+K Sbjct: 61 YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNN 100 >UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment) n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL Length = 192 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M++ + G + E++ R + +K AK+EQ R +V V++ E + T+ Sbjct: 1 MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRQSGSSEKVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGL 77 G I A A D YAA+D Sbjct: 61 VDKGPVIRAEACADDAYAALDVA 83 >UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0T2_SALRD Length = 132 Score = 76.6 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV---THTSDATLHVNG 58 Q +T +V++++ + E+ + AKLEQ++D I +V+L + T+ + V Sbjct: 30 QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQ 89 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A AI+ +D L RQL K+K KL+ Sbjct: 90 KRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRS 125 >UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Nautiliaceae RepID=B9L9D3_NAUPA Length = 166 Score = 76.6 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVN-G 58 M + I G NVE+TEA+++ ++ +++E+Y I V ++ +K T + +++ Sbjct: 1 MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + +DMYAA+D DKL + L ++ DK+ + Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDY 97 >UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L9_ACIC5 Length = 225 Score = 76.6 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ TG +V + A R ++ + RI +VVL EK ++ T+ + + Sbjct: 1 MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + ++AE M A+ ++K Q + K K+ Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKM 92 >UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia RepID=C6V4K5_NEORI Length = 186 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M++ ++G+ ++ +L E++T + ++++ + V L E D ++ Sbjct: 1 MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I AS E D Y A D K+ +L ++KD+LK+H Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEH 96 >UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=C6YXL0_ORYSJ Length = 321 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTH-------TSDAT 53 +L + G NV++ E ++E + K + + ++ + +V V L + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 L G I A + + YA+ID + R+L K K+K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183 >UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum bicolor RepID=C5WRX8_SORBI Length = 310 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L + G NV++++ L+E + K + + ++ + +V V L + T Sbjct: 73 RLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELGRGPKTSRCEIT 132 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 L G + A + + YA+ID + R+L K K+K Sbjct: 133 LFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK 171 >UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR Length = 209 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Query: 3 LNITGNNVEITEALREFVTAKFA-KLEQYFDR--INQVYVVLKVEKV-----THTSDATL 54 + I G N+E+T AL E V + ++ + I + V+L V K H + Sbjct: 13 VIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSVSKNPKVKNGHRVEVVT 72 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 ++ G I E DMYA+ID L R+L K+KD Sbjct: 73 NLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108 >UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBI5_9PORP Length = 403 Score = 74.6 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHVN 57 ++I + +EAL++F K +L ++ D I++ + L+++K + L V Sbjct: 309 NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKIAAIRLFVP 368 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 G + +A AID ID L RQ+ + K+ Sbjct: 369 GHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE 401 >UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SAX9_OSTLU Length = 132 Score = 74.6 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDATL- 54 + G ++EIT A+ E+ AK K + D I +V V H ++ T+ Sbjct: 3 VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G +HA G+++YA ID D + R + KHK+K Sbjct: 63 MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHS 101 >UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT Length = 177 Score = 74.6 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M + + + A+ E++ +F K+++ + I + + + + + A ++ G Sbjct: 1 MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + D+Y AID L D L +++ K K +++ Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVRER 97 >UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR29_ACIBL Length = 198 Score = 73.9 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 44/94 (46%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G IT A+R+ V + KL + + V+L VEK + ++ T+ + Sbjct: 1 MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + E DM AI ++ + +Q KH ++ + Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQALKHNNRRRN 94 >UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174494B Length = 115 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 MQ++I+ N+++T A+ ++ + +E I +VVL + K A L Sbjct: 1 MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 V G +IHA D+YAA+D LARQL K K L Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTAL 96 >UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorobiaceae RepID=Q3B2F4_PELLD Length = 130 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57 + +T + A+ E+ + L + + I +V+L +K ++ TLHV Sbjct: 35 TIKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEKNKNAEITLHVP 94 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + A G ID +D L RQL K+K+K+ Sbjct: 95 QHDFIAKESGTAYELCIDACVDALGRQLQKYKEKM 129 >UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5 RepID=B3RGS8_9CAUD Length = 105 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59 MQ+ ITG NVEITE + F++ K +KLE+ N V +KVE A + N G Sbjct: 1 MQIEITG-NVEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNSGK 59 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK 87 E+ A A+G D Y A D ++D ARQL K Sbjct: 60 EVIAKAKGSDAYEATDRMVDVAARQLAK 87 >UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Propionibacterium acnes RepID=D1YBK0_PROAC Length = 203 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 6/93 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M++ ++G + +++ +R V + + +E+ DR+ + VV + T + TL Sbjct: 1 MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87 G + A + +D A D D+L QL K Sbjct: 61 RAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVK 93 >UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSP2_9BACT Length = 98 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHV 56 M + I + L EFV K KL+++ +R V+LK++K + LH+ Sbjct: 1 MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G ++ A + G+ A+D I+ L RQ+ K+K +L++ Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK 98 >UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP Length = 126 Score = 73.1 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 58/101 (57%), Gaps = 7/101 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56 ++ ++G ++E+T +L+ FV K +L ++ +RI +V V L+ + + + + Sbjct: 8 EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEI 67 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTK--HKDKLKQH 95 +G +++A + + + AI LIDKL R L+K H K+++H Sbjct: 68 HGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRH 108 >UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=2 Tax=Planctomyces RepID=C1Z9P6_PLALI Length = 114 Score = 72.7 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59 MQ+ IT + I+ +E + K KL YF R+ + V + E T + + Sbjct: 1 MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHKH 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A+ G ++ + K+ +Q+ K+K+K++ H Sbjct: 61 DFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDH 96 >UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS Length = 211 Score = 72.3 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 MQ+ + G +++ +ALR VT + L +YF VV+ + +D +HV G Sbjct: 1 MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLA 82 + + E + Y A D +K+A Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKVA 84 >UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacteraceae RepID=Q0BUA9_GRABC Length = 236 Score = 71.9 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M + ++G +++++AL+E V ++ + +YFD+ + V + D LH G Sbjct: 35 MHITVSGKQIDLSDALQERVASQLDTISRKYFDQALEAQVTFSRLRSFFICDINLHAGRG 94 Query: 59 GEIHASAEGQDMYAAIDGLIDKLAR 83 + E D A D + +A+ Sbjct: 95 LILRGEGEAADANGAFDDAAEHIAK 119 >UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Marinomonas RepID=A6VX39_MARMS Length = 130 Score = 71.5 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 4/95 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH---TSDATLHVNG 58 LNI+G++V+ E ++E V K L + ++I + V L EK +A++H+ G Sbjct: 3 TLNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPG 62 Query: 59 GEIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKL 92 ++ A + + + A+D L+ KL +QL KHK K Sbjct: 63 HDLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAKH 97 >UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2 Tax=Proteobacteria RepID=A4U0N1_9PROT Length = 120 Score = 71.5 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 15/103 (14%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV----------VLKVEKVTH 48 MQ L IT + ++ +EA+ V K AKLEQ+FDRI V L + ++ Sbjct: 3 MQNPLQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESDHKNSSNLHHKGNSY 62 Query: 49 TSDATLHVNGGEI---HASAEGQDMYAAIDGLIDKLARQLTKH 88 L+V G E+ S E +D+YAA+ G + RQL ++ Sbjct: 63 LVRIDLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEY 105 >UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8 Tax=Chlorobiaceae RepID=B4S5H7_PROA2 Length = 110 Score = 71.2 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57 + +T + + ++ L++ F I +V+L + + ++ T+HV Sbjct: 12 NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVP 71 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A G AID +D + RQL K+K+KL+ H Sbjct: 72 QQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAH 109 >UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=B5D3P6_9BACE Length = 113 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M++ I + + ++ L F+ K KLE++ D I +V V LKV K + + Sbjct: 15 MEVRIQSIHFDASDKLEAFIQKKAEKLEKFCDNIMKVEVSLKVVKPETAMNKEAGVRVLA 74 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 E +A +ID ++ L++QL K K+KL+ Sbjct: 75 LNSEFYAEKISDTFEESIDVCMEALSKQLLKAKEKLQ 111 >UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT Length = 155 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 8/102 (7%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55 +L ++G ++E+T +L+ FV K +L ++ +RI ++ + L+ + + + Sbjct: 38 ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95 +NG +AS + + A++ L++KL R + + K+++H Sbjct: 98 INGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRFFKVQRH 139 >UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4 Tax=Bacteroidetes RepID=A2U255_9FLAO Length = 100 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55 M +N ++VE +E L + T K KL F I + V K E + + L Sbjct: 1 MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTSSDNTGMICNIRLS 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 V G + A A + ++I+ + L QLTK KDK+ Sbjct: 61 VPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMS 98 >UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Actinomycetales RepID=A0LVS3_ACIC1 Length = 322 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHVNG 58 +T VE+ +R +V K AK+E+ ++ +V V + E+ + T G Sbjct: 1 MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRLADSCERVELTCISAG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I A A + M AA D +KL +L K D+ + H Sbjct: 61 PPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVH 97 >UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Thermotogaceae RepID=A6LJQ7_THEM4 Length = 176 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 48/93 (51%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ I+ VE TEAL+ ++ + K+++ + ++ V L+ + + +H G + Sbjct: 1 MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + S + D+Y ID L D +++ + +D ++ Sbjct: 61 LVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVR 93 >UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ Length = 309 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTH-------TSDAT 53 +L + G NV++ E ++E + K + + ++ + +V V L + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 L G I A + + YA+ID + R+L K K+K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183 >UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Betaproteobacteria RepID=Q3SIX5_THIDA Length = 189 Score = 68.8 bits (168), Expect = 6e-11, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDA 52 M+ L IT ++E +EAL + K KLE +F I VVL+V + Sbjct: 1 MKTPLQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRI 60 Query: 53 TLHVNGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + V G EI + +D+Y A+ D RQL + +L++ Sbjct: 61 DIGVPGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRRLRR 103 >UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae RepID=C6X055_FLAB3 Length = 96 Score = 68.5 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M++++ + L E + K +KLE Y+D+I + V LKVE K T++ L V Sbjct: 1 MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVENKSDKENKTAEIILAV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 G +I ++D + R L K K+ Sbjct: 61 PGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE 94 >UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7IG48_THEAB Length = 176 Score = 68.5 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 46/95 (48%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M ++ ++T A++ ++ +F K+++ + + + L+ + + A +H G + Sbjct: 1 MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + D+Y ID L D ++L + ++ ++ Sbjct: 61 LVVTETSDDIYNLIDILSDAFEKKLKREREYVRTR 95 >UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associated protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M1S9_GRAFK Length = 99 Score = 68.5 bits (167), Expect = 7e-11, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M+ N++ +E L F K KLE +D I + + K + + ++ L Sbjct: 1 METIFEFVNIDKSENLEAFTQKKLNKLETKYDWIVRANIFFKRDENKKPNGYITEVRLSA 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G EI A ++ A+I L RQ K K K+ H Sbjct: 61 PGPEIFAQSDENSFEASIAETTRDLDRQCEKRKAKMSTH 99 >UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA Length = 172 Score = 68.1 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 14/106 (13%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-------SDATLH 55 L IT +E +EAL E + KLEQ++D I +VV++ E H + Sbjct: 66 LQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVE-EPHRHKQHGRHFHVRVDVS 124 Query: 56 VNGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V G I AS + +D Y A+ D RQL + D L H Sbjct: 125 VPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTH 170 >UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE Length = 117 Score = 67.7 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55 M++ + G N +T+A RE + +F K+ + + Q+ V L ++ ++ATL+ Sbjct: 1 MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPSIPEAQVAEATLY 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88 + G + A AE DM AI+ ++L +Q+ +H Sbjct: 61 LKGVTLRARAEAGDMGHAINLCEEQLFKQVKRH 93 >UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9I9_9CLOT Length = 180 Score = 67.7 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 +NIT E+ + ++ + + ++++ V L + D T+ G I Sbjct: 2 INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIR 61 Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 A + + +ID +D L R+L K K L Sbjct: 62 GEAAAEKIEPSIDFAVDDLKRKLRKLKTSL 91 >UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Actinobacteridae RepID=D2RAS6_GARVA Length = 223 Score = 67.7 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M++ ITG + +I + R+ V +K ++ +V +VL E + T+ Sbjct: 1 MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPRQADTAKRVEITV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLID 79 I A A D ++A+D +D Sbjct: 61 VAGSTVIRAEASSTDQFSALDMALD 85 >UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUF5_CHIPD Length = 99 Score = 67.7 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55 M + I + + L + V+ K KL ++DRI V V LK++ + H ++ +H Sbjct: 1 MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHQVKDKIAEIKVH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + ++ E + + D D + Q+ K K+K Sbjct: 61 IPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK 96 >UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Flavobacteriales RepID=A8UI75_9FLAO Length = 101 Score = 67.3 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M++N N L +F+ + KL+ ++D+I Q V LKVE K +A + V Sbjct: 1 MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVENTSDKENKIFEAKVSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G + + D I L RQ+ K K+KL+ Sbjct: 61 PGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLRS 98 >UniRef50_A3U9H3 Site-specific recombinase, phage integrase family/ribosomal subunitinterface protein n=3 Tax=Flavobacteria RepID=A3U9H3_9FLAO Length = 100 Score = 67.3 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55 M++N +V +E L F T K KL +D I + V K E + ++ L Sbjct: 1 MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENTSEPDTGMIAEIRLS 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G + A + + A+ + ++L QL K K +K Sbjct: 61 APGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRKASMK 98 >UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Bifidobacterium RepID=B8DT99_BIFA0 Length = 228 Score = 66.5 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + +TG +++I + R+ V +K ++ +V VVL E + T+ Sbjct: 1 MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRLHDTAVRVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81 + A A D +A+D +DKL Sbjct: 61 VAGSTVVRAEASSLDEVSALDLALDKL 87 >UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa RepID=D2NS77_9MICC Length = 213 Score = 66.1 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHVN 57 ++NI G N+++TE L E+V K K Q D + + V + + + T+ Sbjct: 4 EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHLGGESIRVEITVVGT 63 Query: 58 GGEIHASAEGQDMYAAIDGLIDK 80 G + + A+G D +A D K Sbjct: 64 GPVLRSEAQGHDKFAVFDETYGK 86 >UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=3 Tax=Campylobacterales RepID=Q30TJ3_SULDN Length = 180 Score = 66.1 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M +++TG +VE+T+A++ + A L +Y I V V+ + K + +++ Sbjct: 1 MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIASTQTKKGKDHSVVEFVINL 60 Query: 57 NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I QD+YAAID + + + + D+ H Sbjct: 61 AHKNSIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGH 100 >UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=5 Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1 Length = 179 Score = 66.1 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 5/98 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD-----ATLH 55 M++ IT N + R ++ K ++ + +I++ + L E+ +D ATL+ Sbjct: 1 MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRSQADHFILKATLN 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 ++A +++ A D ++ L +Q+ K K++ Sbjct: 61 TGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKME 98 >UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT Length = 126 Score = 65.8 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 51/99 (51%), Gaps = 5/99 (5%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56 +L + G ++ +T+A++ + +L ++ RI+++ + +++++ + + + Sbjct: 12 KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRVHSGPQMFNAKGIIEL 71 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G ++ AS +D Y ++ LI+KL R + K LK Sbjct: 72 RGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALKGR 110 >UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis group RepID=Q3YS76_EHRCJ Length = 197 Score = 65.4 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYF--DRINQVYVVLKVEKVTHTSDATL-HV 56 M + IT ++T+ ++ +V + ++F D V V L + S ++ + Sbjct: 1 MNIIITARGFDVTDNIKTYVERSVQDYITKFFADDSTVSVKVTLSKDANLFNSTISISDI 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK-DKLKQH 95 I S Y AID ID L +L KHK +K+ ++ Sbjct: 61 KSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKTEKINKY 100 >UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Campylobacterales RepID=D1B1B4_SULD5 Length = 171 Score = 65.4 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 5/99 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLH- 55 M +I G ++TE ++ ++ L +Y I V V+ + K + + ++ Sbjct: 1 MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADEKNGKKGFSVEFAINM 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + + + +D+YAA+D +++ + L +H DKL Sbjct: 61 AHKNTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNS 99 >UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB Length = 190 Score = 65.4 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 14/107 (13%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52 MQ L +T +++ +ALR + + +L+ FD I +V L+ H Sbjct: 1 MQTPLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRQGNLYEVTI 60 Query: 53 TLHVNGGEIHASAEGQDMYA------AIDGLIDKLARQLTKHKDKLK 93 L V G E+ D+ A AI + RQL HK ++ Sbjct: 61 ELRVPGTELVVHPTKGDVPAHEHPQVAIRDAFTAIERQLRAHKQRIS 107 >UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RH54_9RHOB Length = 192 Score = 65.0 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 4 NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLHVNG 58 +T +++ ++A+ V + KLE I + V ++ H D +L + G Sbjct: 6 EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKGTEYIIDISLQMPG 65 Query: 59 GEIHASAE------GQDMYAAIDGLIDKLARQLTK----HKDKLKQH 95 +H D+Y AI + + RQL + HK + + H Sbjct: 66 STLHIDRHPGDDHAHTDIYVAIRDAFNAMERQLRRWQDQHKGRPEIH 112 >UniRef50_A2TTF7 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=4 Tax=Bacteroidetes RepID=A2TTF7_9FLAO Length = 103 Score = 65.0 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M + I ++ +EAL ++ K KL + +D + + V++K E + L V Sbjct: 1 MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKETAQTHHNAICEIELSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89 G I A ++ ++ A+ I L QL K K Sbjct: 61 PGPRIFAQSQEKNFEVAVKETISDLDVQLKKRK 93 >UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLA7_9PLAN Length = 104 Score = 64.6 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 17 REFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHVNGGE-IHASAEGQDMYAAI 74 +E ++ K KL + F+RI V V + +E + + + A+ + A+ Sbjct: 6 QETISEKVQKLTRLFERITSVDVTVDLEHNDKPGVELRVTAERTDDFVAADSCSSLLGAL 65 Query: 75 DGLIDKLARQLTKHKDKLKQH 95 D I K+ +QL KHK++LK H Sbjct: 66 DNSIHKMEQQLRKHKERLKDH 86 >UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria RepID=B8GU63_THISH Length = 192 Score = 64.2 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 16/109 (14%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56 + +T N++ + A+ + V A+ KL Q+ D I VV++ + + L V Sbjct: 9 VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68 Query: 57 NGGEIHASAE------GQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95 GE+ AS E +D+Y A+ D + RQ L K + ++K H Sbjct: 69 PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGRVKHH 117 >UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC Length = 180 Score = 63.8 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M L+ITG E+T++++ +V + F L +Y I V+ + K D +++ Sbjct: 1 MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADERNGKKGFIVDFLINL 60 Query: 57 NGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + +D+YAAID + ++ ++ L + DK H Sbjct: 61 AKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTH 100 >UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AQL9_9FLAO Length = 99 Score = 63.1 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHV 56 M ++I + +EA+ E ++AK +L +D I + V K E + L Sbjct: 1 MTIDIQYVQMPTSEAMNELLSAKLDRLATKYDWIIRAQVHFKQENDPTGKGKICEMELSA 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I A + D A I L +QL+K K + + Sbjct: 61 PGPRIFAQSNEDDFEKAAAKTIKDLEKQLSKRKAIMNKR 99 >UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB Length = 180 Score = 62.7 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV-N 57 L+I G N ++T+ ++ ++ L + I + + + K T + +HV Sbjct: 4 LHIYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADERNGKKGFTFEFDIHVAK 63 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + + + +D+YAAID + + + L ++ DK+K H Sbjct: 64 KGNVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNH 101 >UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNT4_9BACT Length = 126 Score = 61.5 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55 + I G ++E+TE+L+ V KL ++ I ++ V L++E + + + Sbjct: 6 NVEIVGRHLELTESLKAKVNEVVEKLYEHDSGITRIRVELEMELHSKTHQNEFIAKGHVV 65 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 ASA G D+Y AI L +KL R L ++K + + Sbjct: 66 DRHDHFDASALGDDLYQAIGSLAEKLDR-LIRNKSRRR 102 >UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula baltica RepID=Q7UMU4_RHOBA Length = 113 Score = 61.5 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-TSDATLHVNGG 59 MQ+N++ + + + V K KL + +DR+N + V + +E + + + V Sbjct: 1 MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60 Query: 60 -EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ A AE + AA+D I K +QL K K+K +H Sbjct: 61 DDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEH 97 >UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magnetospirillum RepID=Q2VZ29_MAGSA Length = 158 Score = 61.1 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 18/111 (16%) Query: 1 MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----------LKVEKVTH 48 MQ+ IT + V+ ++A+ + K AKLE FDRI VV L + Sbjct: 39 MQIPLQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVIEQHHKNTSNLHHKGEPF 98 Query: 49 TSDATLHVNGGEIHASA------EGQDMYAAIDGLIDKLARQLTKHKDKLK 93 L V G E+ +D+Y A+ + RQL ++ D+ + Sbjct: 99 HIRLALTVPGDELVVKRDPKDSHVNEDIYVALREAFAGMERQLKEYVDRSR 149 >UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCB56 Length = 57 Score = 60.8 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 30/49 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT 49 MQ+ ++G +++T+ ++ +V K ++LE+Y D ++V V + +K Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQK 49 >UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S30EA n=10 Tax=Sphingomonadales RepID=C8WD98_ZYMMN Length = 200 Score = 60.8 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHT-SDATLHV-N 57 M + I+G+ ++ ALRE+V +++ +YF + V + D +H Sbjct: 1 MDIRISGHQIDTGAALREYVNDHLSQIVSKYFPKCLSASVTFGNRRHAIISCDIIIHAMR 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + AS +D +AA D K+ +QL +H +L+ Sbjct: 61 DIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQTR 98 >UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella burnetii RepID=A9KBC8_COXBN Length = 183 Score = 60.4 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 13/108 (12%) Query: 1 MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52 MQ+ IT N++ T A+ + + K KL QY D+I ++V+++ K Sbjct: 6 MQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRI 65 Query: 53 TLHVNGGEIHAS-AEGQDMYAAI----DGLIDKLARQLTKHKDKLKQH 95 L + G E + E +D+Y AI D + K+ ++ +K H Sbjct: 66 NLTLPGKEFAVNRNEVEDLYVAIRDAFDDMARKVEEEMRMRMGHVKTH 113 >UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V5D5_9AQUI Length = 158 Score = 60.4 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 32 DRINQVYVVLKVEKVTHT--SDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLT 86 + V V EK H D ++ N GG IHA E D+Y AID ++D++ RQL Sbjct: 8 EDSVNVRVTYDFEKHRHRNRVDIDIYFNTPGGGVIHAWEESNDLYTAIDFVVDEVERQLV 67 Query: 87 KHKDK 91 + K + Sbjct: 68 RLKAR 72 >UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms RepID=A1SY46_PSYIN Length = 189 Score = 60.0 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 16/109 (14%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56 L IT ++ ++A+ + K AKL++++D I +VV++ + L + Sbjct: 5 LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64 Query: 57 NGGEIHA------SAEGQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95 GE+ +D Y AI + RQ + K + K+K H Sbjct: 65 PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTH 113 >UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH Length = 122 Score = 60.0 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59 M + IT E+ + L + + F K +++ V +K+E + + G Sbjct: 1 MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +I + E ++ A + D+L RQL KHK+K H Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAH 96 >UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M130_ACIFD Length = 182 Score = 60.0 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M +++ +TE R V + A+LE+Y +V V ++ ++ T Sbjct: 1 MAVDLRCRGCTLTEQQRAHVEDRIARLEKYLGAPERVEVHVERAGNPANPDRVVTEVTYV 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL--KQH 95 V+ + A G+ + D ++L R+L + K +L + H Sbjct: 61 VSKAVVRARGVGETELESFDRAEERLKRRLERLKGRLVARSH 102 >UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJ85_9BACT Length = 99 Score = 59.6 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57 ++ N L+EF + KL ++++I +++ KVE + ++ + + Sbjct: 3 NVHFRAVNYTADVTLKEFAQQRLGKLTTFYNQIIEMHCFTKVENTSDKINKWAELKIEIP 62 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G + + AID D R L + K+K+K Sbjct: 63 GENVVVKKMCKTFEEAIDSAADSAERILKRRKEKIK 98 >UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Campylobacterales RepID=C3XP50_9HELI Length = 186 Score = 59.2 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 13/107 (12%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV------------TH 48 MQ IT + E+T+A+++++ + LE+Y I V++ ++ T Sbjct: 1 MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQEKKGSKKGEKKKKRTF 60 Query: 49 TSDATLHV-NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 D TL + + + + +D YAA+D I ++ + L ++ DK + Sbjct: 61 GIDITLSLAHSNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNK 107 >UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14ME0_SPICI Length = 125 Score = 59.2 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQY----FDRINQVYVVLKVEKVT--HTSDATL 54 M+ I N+ IT+A+ + + F KL +Y + + V + E HT+ + Sbjct: 1 MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTA-IDI 59 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A D Y A+D + K+ QL K K K + Sbjct: 60 RGRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDR 100 >UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DL86_AZOVD Length = 189 Score = 58.8 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 18/113 (15%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDA 52 MQ + I + +E + A+ + + +LE++++RI V H Sbjct: 1 MQKPVQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHQGRLYQVKV 60 Query: 53 TLHVNGGEIHA------SAEGQDMYAAIDGLIDKLARQL----TKHKDKLKQH 95 L + G+IH+ +D Y AI + RQL K + ++K H Sbjct: 61 HLTLPDGDIHSSQAHHDEHAHEDPYVAIRDSFRAVRRQLEDYARKRRAEVKSH 113 >UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZU16_OPITP Length = 131 Score = 58.4 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57 +L I G + +T+ALR + K +L ++ RI +V V L E + + ++ Sbjct: 12 KLVIRGIRLWLTDALRSTIETKAERLFRHEPRIIRVRVDLDREHRNGVALFVAKGRIELH 71 Query: 58 GGEIHASAEGQDMYAAIDGLI 78 G ++ AS D Y +ID LI Sbjct: 72 GPDLLASVVSNDAYKSIDWLI 92 >UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhizobiales RepID=A9CX73_9RHIZ Length = 181 Score = 58.4 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 10 VEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GGEIHASAEG 67 +EI E+ R + + + +YFD +V ++ +D +H++ G +HA+ E Sbjct: 1 MEIGESFRTRIDDHVSGAVRKYFDGGFSSHVTVEKSGSRFQADCKIHLDTGVVLHATGEA 60 Query: 68 QDMYAAIDGLIDKLA 82 QD A D +++ Sbjct: 61 QDPQPAFDAAAERIE 75 >UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QEF9_9SPHI Length = 121 Score = 58.4 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK------VTHTSDATLHVNG 58 + ++L +F+ AK KL+ + DRI V L++E + L + G Sbjct: 1 MHAVKFTADQSLLDFIQAKLDKLDTFHDRIISGEVFLRLEGADSNKVKEKIVEVRLLLPG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 E+ + +A D ++D L +L + K K Sbjct: 61 KELFVKEHDKSFESATDRVMDVLKDKLVRFKQKRND 96 >UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XP15_9FLAO Length = 120 Score = 58.1 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M N ++V + AL +F + KL +D I + V K E + L Sbjct: 20 MNYNFEYHDVAASAALEDFTKEQLDKLVNKYDFIVRADVFFKTENTSSDETGKIAGIRLS 79 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A + + ++ +L QL K KDK+K H Sbjct: 80 APGPRLFADHSSKSFHESVKEATRELNIQLKKRKDKMKSH 119 >UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplasma marginale RepID=B9KIL8_ANAMF Length = 104 Score = 57.7 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVN 57 M + IT + T +++ +V + L +Y V VV+ E T+ ++H + Sbjct: 1 MNVIITCRGYKATASIKSYVEDSISSHLGKYLHDSPQINVRVVMAKEAHMFTACVSIHED 60 Query: 58 GGEI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 E +AS + +Y A+D + +A L K+K++ Sbjct: 61 HHEFVNASKSAETVYKAVDAAVTHVANGLRKYKEEKTD 98 >UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW75_CHLT3 Length = 109 Score = 56.9 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHVN 57 + T + + + +Y+ I +++L +K ++ HV Sbjct: 12 NVQFTLRHSSNHRDIEAYAKDAIKAFHKYYTDILDCHIILDHQKNDKEQNKIAEIKAHVP 71 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + +G AID + + +QL KH+DK Sbjct: 72 SHTFVSKEQGPTYEVAIDTCVSNICKQLKKHRDK 105 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C... 118 7e-26 UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=... 116 2e-25 UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P... 116 3e-25 UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari... 116 3e-25 UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3... 114 9e-25 UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst... 112 3e-24 UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D... 112 4e-24 UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3... 112 4e-24 UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot... 112 4e-24 UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot... 111 7e-24 UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot... 111 7e-24 UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot... 111 7e-24 UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost... 111 8e-24 UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot... 111 8e-24 UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ... 111 8e-24 UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3... 111 9e-24 UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3... 110 2e-23 UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be... 110 2e-23 UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3... 109 3e-23 UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio... 108 4e-23 UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation... 107 1e-22 UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo... 106 2e-22 UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits... 106 3e-22 UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid... 106 3e-22 UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ... 106 3e-22 UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3... 106 3e-22 UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil... 105 4e-22 UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac... 105 6e-22 UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c... 105 6e-22 UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm... 105 7e-22 UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo... 103 1e-21 UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein... 103 2e-21 UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 103 2e-21 UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3... 103 2e-21 UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida... 103 3e-21 UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3... 103 3e-21 UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3... 102 4e-21 UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e... 101 5e-21 UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot... 101 6e-21 UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap... 101 7e-21 UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo... 101 1e-20 UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom... 100 1e-20 UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther... 99 2e-20 UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl... 100 2e-20 UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3... 100 3e-20 UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami... 99 3e-20 UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis... 99 4e-20 UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo... 99 4e-20 UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul... 99 4e-20 UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_... 99 4e-20 UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria... 99 4e-20 UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P... 99 4e-20 UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3... 99 5e-20 UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr... 98 6e-20 UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot... 98 6e-20 UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium... 98 7e-20 UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr... 98 8e-20 UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot... 98 1e-19 UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys... 97 1e-19 UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe... 97 2e-19 UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ... 97 2e-19 UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil... 96 3e-19 UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot... 96 3e-19 UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob... 96 3e-19 UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3... 96 3e-19 UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes... 96 4e-19 UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ... 96 4e-19 UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict... 96 4e-19 UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri... 95 6e-19 UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y... 94 1e-18 UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3... 94 1e-18 UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro... 94 1e-18 UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3... 94 1e-18 UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad... 93 2e-18 UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot... 93 2e-18 UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta... 93 2e-18 UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot... 93 3e-18 UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3... 92 4e-18 UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri... 92 5e-18 UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot... 92 5e-18 UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ... 92 7e-18 UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin... 92 7e-18 UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic... 91 9e-18 UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation... 91 1e-17 UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg... 91 1e-17 UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3... 91 1e-17 UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot... 91 1e-17 UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter... 91 1e-17 UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia... 90 2e-17 UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax... 90 2e-17 UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R... 90 2e-17 UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation... 90 2e-17 UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri... 90 2e-17 UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot... 90 2e-17 UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri... 90 3e-17 UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=R... 90 3e-17 UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Acti... 90 3e-17 UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3... 90 3e-17 UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3... 89 3e-17 UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu... 89 4e-17 UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG... 89 4e-17 UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea s... 89 5e-17 UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3... 88 6e-17 UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3... 88 8e-17 UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S3... 88 8e-17 UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p... 88 8e-17 UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation... 88 9e-17 UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens ... 88 1e-16 UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3... 88 1e-16 UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne... 88 1e-16 UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2... 88 1e-16 UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3... 87 1e-16 UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3... 87 1e-16 UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae... 87 1e-16 UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3... 87 2e-16 UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3... 87 2e-16 UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr... 87 2e-16 UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)... 87 2e-16 UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3... 87 3e-16 UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter... 87 3e-16 UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero... 86 3e-16 UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=... 86 3e-16 UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3... 86 3e-16 UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium... 86 4e-16 UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid... 86 4e-16 UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation... 86 4e-16 UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri... 85 5e-16 UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex... 85 6e-16 UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S3... 85 6e-16 UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3... 85 6e-16 UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro... 85 7e-16 UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A... 85 7e-16 UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact... 85 8e-16 UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re... 85 8e-16 UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3... 85 8e-16 UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S3... 85 8e-16 UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re... 85 9e-16 UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3... 85 1e-15 UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba... 85 1e-15 UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ... 84 1e-15 UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax... 84 2e-15 UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S3... 84 2e-15 UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3... 83 2e-15 UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3... 83 2e-15 UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kyto... 83 2e-15 UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation... 83 2e-15 UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3... 83 3e-15 UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3... 83 3e-15 UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Gro... 83 3e-15 UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida... 83 3e-15 UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil... 83 3e-15 UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor... 83 4e-15 UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro... 82 4e-15 UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa... 82 5e-15 UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3... 82 8e-15 UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick... 82 8e-15 UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorob... 81 9e-15 UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth... 81 9e-15 UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev... 81 1e-14 UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal... 81 1e-14 UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p... 81 1e-14 UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1... 81 1e-14 UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M... 81 1e-14 UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact... 81 1e-14 UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3... 81 1e-14 UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act... 81 1e-14 UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chl... 81 1e-14 UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3... 81 1e-14 UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal prote... 81 1e-14 UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi... 80 2e-14 UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R... 80 2e-14 UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=... 80 2e-14 UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p... 80 2e-14 UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell... 80 3e-14 UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3... 80 3e-14 UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Prop... 80 3e-14 UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3... 80 3e-14 UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=... 79 3e-14 UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA 79 4e-14 UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3... 78 6e-14 UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr... 78 6e-14 UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr... 78 1e-13 UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=... 78 1e-13 UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr... 78 1e-13 UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip... 77 2e-13 UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali... 77 2e-13 UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3... 77 2e-13 UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=... 77 2e-13 UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associ... 77 2e-13 UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw... 77 2e-13 UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation ... 77 2e-13 UniRef50_A3U9H3 Site-specific recombinase, phage integrase famil... 77 2e-13 UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S3... 77 2e-13 UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation... 77 3e-13 UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavob... 77 3e-13 UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M6... 76 3e-13 UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Camp... 76 3e-13 UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostri... 76 4e-13 UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S3... 76 4e-13 UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S3... 76 4e-13 UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr... 75 5e-13 UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation... 75 5e-13 UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bactero... 75 6e-13 UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S3... 75 6e-13 UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Ther... 75 7e-13 UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chi... 75 8e-13 UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac... 74 1e-12 UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Ro... 74 1e-12 UniRef50_A2TTF7 Site-specific recombinase, phage integrase famil... 74 1e-12 UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3... 74 1e-12 UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t... 74 2e-12 UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacte... 73 2e-12 UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S3... 73 2e-12 UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1... 72 5e-12 UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Ta... 72 5e-12 UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella bu... 72 5e-12 UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magneto... 72 6e-12 UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavoba... 72 7e-12 UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=... 71 7e-12 UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Act... 71 8e-12 UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S3... 71 1e-11 UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S3... 71 1e-11 UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce... 70 2e-11 UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3... 70 2e-11 UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia muc... 70 2e-11 UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S3... 70 2e-11 UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost... 70 2e-11 UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3... 70 3e-11 UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=... 70 3e-11 UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lu... 69 4e-11 UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum ... 69 4e-11 UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwen... 69 4e-11 UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho... 68 6e-11 UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3... 68 6e-11 UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavoba... 68 6e-11 UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Bla... 68 7e-11 UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3... 68 8e-11 UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal prot... 68 9e-11 UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylo... 68 1e-10 UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S3... 68 1e-10 UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroh... 68 1e-10 UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal pro... 67 2e-10 UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal p... 67 2e-10 UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia p... 67 2e-10 UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azo... 66 2e-10 UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplas... 66 3e-10 UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=p... 66 5e-10 UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl... 66 5e-10 UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntroph... 66 5e-10 UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S3... 65 6e-10 Sequences not found previously or not previously below threshold: >UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales RepID=Q97F93_CLOAB Length = 174 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+L ++G N+E+TE LRE V + +KLE+YF + +V L VEK + T+ NG Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + DMYA+ID + DKL RQ+ K K KL++ Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERR 95 >UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular organisms RepID=RP5M_SALTY Length = 95 Score = 116 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 90/95 (94%), Positives = 93/95 (97%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQLNITG+NVEITEALREFVT KFAKLEQYF+RINQVYVVLKVEKVTH SDATLHVNGGE Sbjct: 1 MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHASAEGQDMYAAIDGLIDKLARQLT+HKDKLKQH Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95 >UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria RepID=RP5M_PSEPK Length = 102 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 50/94 (53%), Positives = 71/94 (75%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NI+G +VE+T+ LR++V K A++E +FD+I V V++KVEK+ +ATL + GGE Sbjct: 1 MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A+AE +DMYAAID L DKL RQL KHK+K + Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEKQQS 94 >UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWV9_9PROT Length = 212 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 44/95 (46%), Positives = 65/95 (68%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ++ITG +VE+TE ++ +VT K L+ FD + V+VVL VEK + ++ NG Sbjct: 26 MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IH S E +DMYA+IDG+IDK+ RQL +++ KL +H Sbjct: 86 IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRH 120 >UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Leptospirillum RepID=A3EWH8_9BACT Length = 176 Score = 114 bits (287), Expect = 9e-25, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 57/93 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ +TG ++EITEA+R V K L++ + V+L VEK + TLH NG Sbjct: 1 MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 IHA + D+YA++D +DKL RQL + K+K++ Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIR 93 >UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1DDE8_MYXXD Length = 221 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 56/95 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ NIT +++L+E+ K ++ + DR + +VVL +E+ H +D T+H Sbjct: 1 MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + DMYA+ID +DK+ RQL +++DKLK H Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSH 95 >UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA Length = 191 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 6/97 (6%) Query: 1 MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATL 54 MQ+ ++G NVE+TE +RE+V K ++L++Y D+I V L V + + + L Sbjct: 1 MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +V GG I A DMYAAID D L RQL K K + Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTR 97 >UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11 Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB Length = 182 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ +T ++E ++AL+ + K ++++Y D V V L VEK+ H ++ T+ G Sbjct: 1 MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I A+ E DMYA+ID + DK+ RQL + K+++K H Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH 95 >UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10 Tax=Clostridiales RepID=Q0B0B5_SYNWW Length = 181 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 57/92 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ I G N+EIT+AL+++ T + +KLE+Y D + + V L +E H + T+ +NG Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + DMY++ID + +KL +Q+ K+K +L Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRL 92 >UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH Length = 113 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 46/95 (48%), Positives = 70/95 (73%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ ITG++V++T+AL+ +V KF +LE++FD + +V+L VEK+ ++A L ++G Sbjct: 1 MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +HA +DMYAAIDG+IDKL RQL KHK+K+ H Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDH 95 >UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM Length = 180 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 60/95 (63%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+N+T ++E ++ LR + K +++++Y D +VVLKVEK H ++ T+ NG Sbjct: 1 MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I+ + E DMY+AID L D L Q+ K K+K+++ Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRR 95 >UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12 Tax=Firmicutes RepID=Q2RLX7_MOOTA Length = 190 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 59/94 (62%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+L I G N+ +T+ALR+++ + K+E+Y D ++++ V L V + H + T+ +NG Sbjct: 16 MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + DMY ++D +++KL +Q+ K+K +L + Sbjct: 76 LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNK 109 >UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I442_9CLOT Length = 178 Score = 111 bits (279), Expect = 8e-24, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++++ N T AL+E + K +K+++YFD + L V+K + T+ NG Sbjct: 1 MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +DMY +ID ++ KL RQ+ K + KL + Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRR 95 >UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6 Tax=Proteobacteria RepID=Q0ADR1_NITEC Length = 111 Score = 111 bits (279), Expect = 8e-24, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 65/91 (71%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LN+TGN+V IT A+R++VT+K + ++FD I + V L V+K+ ++AT+H+ G E Sbjct: 1 MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 I A+ DMYA+ID L DKLARQ+ KHK+K Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEK 91 >UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella RepID=B0TYD3_FRAP2 Length = 102 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 45/94 (47%), Positives = 62/94 (65%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG +VE+T+A++ +V K K+ YFD I V+L VEK ++A + V G E Sbjct: 1 MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 A AE +D+YAAID L DKLARQ+ KHK+KL+ Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRD 94 >UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12 Tax=Clostridia RepID=B0K3A9_THEPX Length = 181 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 1 MQLNITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ++G N + +T+ LR+ V +KL +YF +V VL V+K H ++ T+ G Sbjct: 1 MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A DMY +ID ++DK+ +Q+ KHK KLK Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96 >UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134 Tax=Bacteria RepID=B8CYM6_HALOH Length = 184 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTHTSDATLHVNGG 59 M++ G N+++T AL+E+ K +KL +YFD + ++ ++VEK H + T ++NG Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + E QDMYA+IDG+++KL RQ+ K+K K+ + Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKINR 95 >UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria RepID=Q7W3J9_BORPA Length = 112 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 66/95 (69%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L+I G ++++T A+RE+V K A++ ++FD + V+L VE + H ++ T+ + G + Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IH A +++YAAID L+DK+ RQ+ KHKDK++ H Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSH 95 >UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Anaeromyxobacter RepID=A7HIE3_ANADF Length = 185 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 38/95 (40%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NIT ++E TEAL+ V + +++Y DR ++ + VL VE + H ++ T+ Sbjct: 1 MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + +A DMYA+ID DK+ RQL KHK+KL H Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNH 95 >UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGY6_9BACT Length = 177 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 53/85 (62%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT N+E+T+A+R++ K +KLE+YFD I V+L+V+K H + + G Sbjct: 1 MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQL 85 + + +D+YA+ID +DK+ +QL Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85 >UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98 Tax=Gammaproteobacteria RepID=A1RNM6_SHESW Length = 95 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 50/95 (52%), Positives = 76/95 (80%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ + G+++EITE+LR +V KF+KLE++F++I+ V+VVL VEK+ ++A +++ GGE Sbjct: 1 MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A++E DMYAAID LIDKL RQ+ KHK+KL +H Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95 >UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium RepID=C9XLM7_CLODC Length = 187 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT-LHVNGG 59 MQ+ ++G +++T+ ++ +V K ++LE+Y D ++V V + +K + T + +NG Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A D+YAAID + DKL+RQ+ K+K K+K Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKD 95 >UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ3_9FIRM Length = 181 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE- 60 + G N+EIT +LRE+V + K+ +YFD + + V+L V K H + T+ + GG Sbjct: 3 TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIL 62 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + DMY +ID +++KL RQ+ K K KL + Sbjct: 63 LRGEESTMDMYTSIDLVVEKLERQIHKQKTKLARR 97 >UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIZ4_ACIFE Length = 181 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G N+E+T+AL+++V + + + F + ++ V++VEK HT + T+ +G Sbjct: 1 MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +MYA+ID ++K+ RQ+ K+K +L + Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRLMKR 95 >UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCZ2_9FIRM Length = 180 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G N+E+T AL+++V K + + F + ++ V+++E+ H + T+ +G Sbjct: 1 MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A ++MYA+ID ++K+ RQ+ K+K +L + Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRLMKR 95 >UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia sp. EuI1c RepID=D1V7P2_9ACTO Length = 283 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + + G + + E R V K AKLE+Y ++ +V V L E + T+ Sbjct: 1 MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A D Y+A+DG KLA +L + ++ H Sbjct: 61 YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDH 101 >UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUS0_9FIRM Length = 176 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L + G N+++ + L+ KF+KL++YF Q V +K + T+ + G Sbjct: 1 MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A QDM+ +ID +DKL RQ+ K+K +LK+ Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKR 95 >UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli RepID=Q71WR7_LISMF Length = 187 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV----EKVTHTSDATLHVN 57 + NI G N+E+TE +R++V K KLE+YF V + + +K + T+ + Sbjct: 3 KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNA-KVEVTIPLP 61 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A D+YA+ID ++DKL RQ+ KHK K+ + Sbjct: 62 NLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNR 98 >UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms RepID=RP5M_RALEH Length = 116 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 63/100 (63%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M I+G++++IT LRE+V K ++ ++FD++ V V+L V+ ++ LH Sbjct: 1 MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G +I A +D+YAAID L+DKL RQ+ ++KD+++ H Sbjct: 61 LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGH 100 >UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria RepID=B5JSL3_9GAMM Length = 117 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 50/97 (51%), Positives = 74/97 (76%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-- 58 M +N+TG+++++T+ALR++V KF +LE++FD + Q++V+L EK H ++A +HV Sbjct: 1 MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 GE+ A AE +DMYAAIDGL+DKL RQL KHK+KL H Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDH 97 >UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI17_THEYD Length = 173 Score = 103 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 61/94 (64%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ I G N+++TEAL++++ + K E++ ++ V + EK TH D L V+G Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A + +D+Y+A+D +++KL +Q+ K+K+K++ Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQN 94 >UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJD6_9BACT Length = 178 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 58/95 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ IT + E+T+A+R++V +KL +YFD+I ++ VL +E + + +LH Sbjct: 1 MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + AE DMY AID ++K+ Q+ K KD++ H Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDH 95 >UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ65_DESAH Length = 179 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 63/95 (66%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ ++T ++ ++AL+ +V K + ++ + + VVL VEK+ H ++ TL + + Sbjct: 1 MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHA E ++MY++ID L+DK+A Q+ K+KDK+++H Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRH 95 >UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSN7_9PROT Length = 202 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M++++ G +++ + LR+ + + + +YF + V L + +D +H+ G Sbjct: 10 MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A D YAA +++ +QL ++K +L+ H Sbjct: 70 ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDH 106 >UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MED7_PARUW Length = 211 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 58/94 (61%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61 + ITG +VEIT++++ + K +K+E++ DRI V V++ ++K+ H + L +I Sbjct: 16 NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKI 75 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A DMYA+ID I +L Q+ ++K K++ H Sbjct: 76 QSQAATPDMYASIDKAIARLEAQIRRYKSKIQDH 109 >UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD Length = 180 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ--VYVVLKVEKVTHTSDATLHVNG 58 M+ + G+N+ +T AL+++V K A+L +YFDR +YV + VE + H + T+ VNG Sbjct: 1 MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A + DMYA+ID DKL Q+ ++K+KL + Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRR 97 >UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1 Length = 207 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58 MQ ++T E TEAL+E+ + ++++YF V+VV+ E+ H D T+ + NG Sbjct: 1 MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + M+++ID + K+ RQ+ ++KDKL+ H Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTH 97 >UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FNI8_SACEN Length = 231 Score = 101 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M + + G NVE+ + R+ V K +LE+Y + + V L E+ + TL Sbjct: 1 MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D YAA+D KL +L + D+ K H Sbjct: 61 KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH 101 >UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Proteobacteria RepID=Q122P6_POLSJ Length = 109 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55 M L I+G+++E+T ALR +VT+K ++ ++FD++ V V+L V+ ++ +H Sbjct: 1 MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V G ++ A + D+YAA+D L DKL RQ+ ++K K K H Sbjct: 61 VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDH 100 >UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria RepID=RAIA_ECO57 Length = 113 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 56/91 (61%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M +NIT +EIT A+R+ V + AKLE++ + +++L E +DAT++ G Sbjct: 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + AS + +DMY AI+ LI+KL RQL K + K Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91 >UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BX30_HYPNA Length = 198 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 MQ+ ITG ++E+ EALR + + +YF R V + + D +H+ G Sbjct: 1 MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + +S + D YAA++ ++K+ +++ ++K +LK H Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH 97 >UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEC8_9ACTO Length = 214 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + + N EI RE+V K +K+ Q++ R +V V L E+ + T+ Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A+ D YAA+D KL +L + +D++K H Sbjct: 61 YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDH 101 >UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae RepID=Q5SIS0_THET8 Length = 186 Score = 99 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%) Query: 1 MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATL 54 M + + G N+EIT+A+R++V K A+L++Y D VVL + H ++ + Sbjct: 1 MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL---KQH 95 + GG + E D+YAAID +D+L Q+ + +++ K+H Sbjct: 61 DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRH 104 >UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA Length = 212 Score = 99.6 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 57/94 (60%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61 + +TG +V +TEA++ + K +K+++ RI V + + ++K+ H D L V+ +I Sbjct: 16 NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKI 75 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A DMY +ID +DKL RQL K+K +++ H Sbjct: 76 KSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDH 109 >UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Fusobacteriaceae RepID=C7N909_LEPBD Length = 106 Score = 99.6 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 M++ I+G ++IT+A++ + K +++ +Y D I ++ VVL VE H +D + Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +G +I AE +D+YAAID L D+L RQ+ K+K++ K H Sbjct: 61 ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDH 100 >UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2 Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV Length = 96 Score = 99.2 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59 MQ NITG +++I+ ALRE + +LEQ + I V L++ K ++ TL + Sbjct: 1 MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +IHA +DMYAAID L +KL +QL + K+KL++ Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96 >UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae RepID=C6M3U2_NEISI Length = 104 Score = 99.2 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 59/91 (64%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L ITG N ++TEA++ +V+ K ++ ++ V + L VEK+ ++A +H+ G + Sbjct: 1 MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 +H A QDMYAAID L+DKL R + KHK+K Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEK 91 >UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FF9 Length = 104 Score = 99.2 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 40/95 (42%), Positives = 62/95 (65%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG++++IT A+ ++T+KF K+E +F ++ V L VEK H +++TLH+ + Sbjct: 1 MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 IHA A DMY AI+ LI KL Q+ K+K+K H Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNH 95 >UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae RepID=B4RCJ5_PHEZH Length = 222 Score = 99.2 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M++ +TG +V++ EALR V + + +E+YFDR VV+ E D + + G Sbjct: 13 MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ G D + A D + K+ +++ ++K +LK H Sbjct: 73 QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDH 109 >UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB Length = 209 Score = 98.8 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 6/100 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-----HTSDATL 54 M+L I G N++IT+ +R ++ K + +F + +V V L V + T++ T+ Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 VNG I A +++YA+ID + DK+AR+L K K+K + Sbjct: 61 FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEKRQD 100 >UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2 Length = 193 Score = 98.8 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 6/97 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI-NQVYVVLKVEKV-----THTSDATL 54 M+L I GNN+ +TE++ ++V +K K ++F +V V L V H ++ T+ Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + NG I A +++YA+ID + DK+ARQL K+K+K Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK 97 >UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus marinus RepID=A2C0K6_PROM1 Length = 194 Score = 98.8 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLKVEKVT----HTSDATLH 55 M+L I G N+E+T +LR++ K K F + + V L V + T++ T+ Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 NG I A +++YA+ID + +KLARQL K+K++ H Sbjct: 61 ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH 100 >UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ Length = 178 Score = 98.8 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQ--YFDRINQVYVVLKVE-KVTHTSDATLHVN 57 M+ ITG VEI+EA++ ++ + K+++ Y D + V ++ + K + +++ Sbjct: 1 MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I+ D+Y AID D L +Q+ + K++LK H Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH 98 >UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria RepID=RAIA_HAEIN Length = 107 Score = 98.5 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 52/95 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LNIT ++IT A+RE + + AKL ++ ++ + VL + +A++ G Sbjct: 1 MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + ASA DMY AI+ + +KL RQL K + K + Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESR 95 >UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46 Tax=Bacteria RepID=Q28VX1_JANSC Length = 235 Score = 98.5 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M+ I+G +EI +AL+ V + ++Y +R VV + T+H++ G Sbjct: 45 MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A A ++YAA + DKL +QL ++K +LK H Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDH 141 >UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium RepID=C9XIR4_CLODC Length = 183 Score = 98.5 bits (245), Expect = 7e-20, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATL-HVNGG 59 M + I+G +E+T+A++ + K +KL+ Y V V + K + T+ VNG Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A +++Y AID + DKL++QL K+K +L+ Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQD 95 >UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y948_COPPD Length = 190 Score = 98.1 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 4/95 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57 ++++ G N+E+T A+++++ K ++ +YFD I V VV++ E+ + TL N Sbjct: 8 KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDAN 67 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 G I A E D+YAAID DKL + + K+KL Sbjct: 68 GRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKL 102 >UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM Length = 209 Score = 97.7 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + + ++++ ALRE + + + +YF+R + YV + E + ++H+ G Sbjct: 1 MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60 Query: 60 E-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A E D Y A + +++L ++L ++K KLK H Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNH 97 >UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae RepID=C8P3U4_ERYRH Length = 180 Score = 97.3 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M + I G NVEIT+A++E V K L +YF D + VV+ V + T+ Sbjct: 1 MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G + A +D YAA+D ++DKL Q+ +HK K+ + Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISR 96 >UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B9Y7S1_9FIRM Length = 178 Score = 96.9 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M+ I G NV ITEA+R+ + K + L++Y D + VV++ +T + T+ Sbjct: 1 MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + E +D+YAAID IDKL Q+ + K +L + Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRR 97 >UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSN2_SYNAS Length = 209 Score = 96.5 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 55/93 (59%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++++T N E ++V + +L +Y D V+VVL VEK + ++ ++ NG Sbjct: 31 MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + E +DM+ AID ++K+ RQL KHK+K++ Sbjct: 91 LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIR 123 >UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales RepID=RAFY_STRP6 Length = 182 Score = 96.1 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 4/98 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTH-TSDATLHVNG 58 + +I G N+E+TEA+R++V +K K+E+YF D+ V LKV + + T+ ++ Sbjct: 3 KFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDS 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL-KQH 95 + A QDMY +ID ++DK+ RQ+ K+K K+ K+H Sbjct: 63 VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH 100 >UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3 Tax=Psychrobacter RepID=A5WCB7_PSYWF Length = 132 Score = 96.1 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 10/102 (9%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----------HTS 50 M ++ITG+++ IT+A+++ V K +K+E++FD+I + V+L ++ H + Sbjct: 1 MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 +A + V G E+ + DMY AI + DKL RQ+ K+K ++ Sbjct: 61 EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRI 102 >UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria RepID=A5CWW3_VESOH Length = 102 Score = 96.1 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 68/95 (71%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQLNI+G++++ITEA+++ K K++ +F+++ + ++L+V+K ++A +HV+G + Sbjct: 1 MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A AE DMY +ID +++KL Q+ KHK+KL H Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNH 95 >UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21 Tax=Betaproteobacteria RepID=A9BRS9_DELAS Length = 119 Score = 96.1 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 5/98 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55 M L I+G+++E+T +LR +V AK ++ ++FD++ V V+L V + TL Sbjct: 1 MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 V G ++ D+YAA+D L DKL R + ++K + + Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQ 98 >UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes RepID=D2BPB3_LACLK Length = 185 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTH-TSDATLHVNG 58 + NI G NVE+T+A+R +V K KL++YF+ YV LKV + TL Sbjct: 3 KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKN 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A QDMY++ID + +KL RQ+ K+K ++ + Sbjct: 63 VTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNR 98 >UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ Length = 192 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58 + I G+N+ IT+A+R ++ K KLE+YF+ + +KV + T + T+ + Sbjct: 3 RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKN 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A D+YA ID + KL RQ+ K+K ++ + Sbjct: 63 VTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNR 98 >UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus RepID=B5YF17_DICT6 Length = 179 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 MQ+N NV IT+ L+++ K ++L ++FD I + V+ E H + T+ Sbjct: 1 MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 NG I AS QD +ID ++DKL QL + K+KL Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVD 99 >UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium RepID=C3WBJ3_FUSMR Length = 183 Score = 95.4 bits (237), Expect = 6e-19, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----VEKVTHTSDATLHV 56 M++ I G + IT+A++ + K ++E+Y D I ++ + L HT++ ++ Sbjct: 1 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G + AS D+YAAIDG+ D L QL KHKDK++ Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIRT 98 >UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4 Tax=Actinomycetaceae RepID=C2BSF1_9ACTO Length = 219 Score = 94.2 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M++ + N EI RE++ K AK+EQ R +V V L EK + T+ Sbjct: 13 MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D YAA+D KL +L + +D+ K H Sbjct: 73 LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH 113 >UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE Length = 191 Score = 94.2 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTH-----TSDATL 54 M + +TG + +T+ALRE+ K + D +VL VEK + TL Sbjct: 1 MSITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPANPRPAVCEVTL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I +DMYAAID K+ RQL K+K K+ Sbjct: 61 RTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDR 101 >UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF930 Length = 129 Score = 93.8 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M LNI+ ++IT A+R + + AKLE+Y ++ + +L + + +AT+ G+ Sbjct: 36 MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + A AE +D+Y AI + KL +L K K+K Sbjct: 96 LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEK 126 >UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18 Tax=Corynebacterineae RepID=A1T5Y3_MYCVP Length = 250 Score = 93.8 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55 ++ +TG NVE+ + R +V K ++LE++ + V L EK + T Sbjct: 48 EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQHVEITAK 107 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A YAA++ + KL +L K KD+ K H Sbjct: 108 GRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH 147 >UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae RepID=B0U6N0_XYLFM Length = 105 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 56/95 (58%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + G +E+T ALRE+V K +L+++F ++ L + K+ H AT+++ G Sbjct: 1 MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++A+A MYAAID + DKL R + KHK+K H Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDH 95 >UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Psychromonas RepID=A1SRN9_PSYIN Length = 136 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ IT + IT+ +R V +F KLE+ + +V++ E +AT++V + Sbjct: 1 MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 I A A+ D+Y AI L KL RQLTK+ K Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKYLHK 91 >UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVF2_9PROT Length = 107 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 42/95 (44%), Positives = 57/95 (60%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ITG N+EITEAL + KF K+ ++F+ I V +LK E H ++ LH+ E Sbjct: 1 MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + A G DMY ID LI K+ RQ+ K K+K K H Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDH 95 >UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD Length = 189 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDR---INQVYVVLKVEKVTHTS-----DA 52 M++ + G N+ +T++L + K ++ ++FD + + V L E+ + + Sbjct: 1 MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60 Query: 53 TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 TL +NG + A +DMYA+ID + DKL RQ+ +++ + Sbjct: 61 TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDR 103 >UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Verrucomicrobia RepID=B4D5R5_9BACT Length = 191 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 2/95 (2%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGGEI 61 + +TG +V +T+ ++++ T++ L + RI + +V+L VEK H ++ LH N I Sbjct: 10 VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHITI 69 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDK-LKQH 95 AS E DMYA+IDG+ K+A+Q+ K+K K L+ H Sbjct: 70 EASHETDDMYASIDGVAAKIAQQMRKYKTKILRNH 104 >UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VDW4_9CLOT Length = 170 Score = 92.3 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 45/83 (54%) Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQD 69 +++TE L+ V K +KLE+YF V VEK + T+ + G I A D Sbjct: 5 IDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVSDD 64 Query: 70 MYAAIDGLIDKLARQLTKHKDKL 92 MY +ID +++ + RQ+ +HK KL Sbjct: 65 MYVSIDLVLEVIERQVNRHKKKL 87 >UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5 Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5 Length = 196 Score = 92.3 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M + ++G ++ + +ALR V + + L +YFD ++ L + +D LH++ G Sbjct: 1 MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A + D YA+ D + ++ ++L ++K KLK Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDR 97 >UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation protein family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G806_SORC5 Length = 122 Score = 91.5 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 49/86 (56%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT ++ T+A++ + K AKL+++ + V L VE +TH +D L Sbjct: 1 MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLT 86 HA+ G+DMYA+ID + DKL RQ+ Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIR 86 >UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae RepID=A9WMP6_RENSM Length = 267 Score = 91.5 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M+ I+G N+ +++ RE+ T K +KLE +++ +V + + T + T+ Sbjct: 26 MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I A A D +AA D +KL +L + KDK K H Sbjct: 86 QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLH 126 >UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes RepID=Y1964_STAS1 Length = 190 Score = 91.1 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58 + I G N+ IT+A+R ++ K KLE+YF+ + +KV + + T+ + Sbjct: 3 RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLKK 62 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 + A D+YA ID + +KL RQ+ K+K Sbjct: 63 VTLRAEERNDDLYAGIDLINNKLERQVRKYKT 94 >UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15 Tax=Desulfovibrionales RepID=Q310S7_DESDG Length = 190 Score = 91.1 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVNG 58 M + T N E ++ L+++ +F KL ++ ++ ++ V+L V+K H ++ G Sbjct: 11 MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + A + +DMYA ID ++DKL Q+ KH +K K Sbjct: 71 LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105 >UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna RepID=B0S0M8_FINM2 Length = 179 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59 M+LN ++++T+ L++ +K KL++YF Q VV K EK + T+ + G Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A +D+ AID + D LARQ+ KHK KL++ Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKR 96 >UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEK7_9RHIZ Length = 198 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M + ITG N++ A + + + K L +Y DR+ +V L+ E+ + ++ + +G Sbjct: 1 MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A EG D Y ++D +L ++ ++K ++K H Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNH 97 >UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ Length = 207 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV---- 56 M++ +TG N E+T+ R V K KLE++ RI +V V +K E+ +D + + Sbjct: 1 MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60 Query: 57 --NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 G I A A D AA+D +DK+A Q+ + D Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRRASD 96 >UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium RepID=A5TX76_FUSNP Length = 181 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56 M+L+I G + +T+A+R++ K +K+E++ D I ++ L K H ++ ++ Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +G + A+A D+YA+ID +D + L KHK+K + Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSR 98 >UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia RepID=C4K0H4_RICPU Length = 192 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56 M ++++G ++ I L+E+ + ++ ++YF I + + E + D + Sbjct: 1 MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + ++ D+Y A D + KL +QL K+K K K H Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNH 99 >UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ2_ACHLI Length = 185 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 1 MQLNITGNN-VEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57 M+ I G N T+A++ +V K K+ FD I+ V VVL+V K + T+ Sbjct: 1 MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + DMYAAID +DKL Q+ +HK K++ H Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHH 98 >UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales RepID=RP5M_BRAJA Length = 203 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M L I+G +V + EALR V+ + + L +YFD ++ L + +D LH++ G Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A + D YA+ D + + ++L ++K +LK Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDR 97 >UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33 Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN Length = 122 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 49/93 (52%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++NI+G++V++T++++E + KFAK+ +F + + +++ E + + + G Sbjct: 1 MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 I A MY AI KL L K +LK Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLK 93 >UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MPR7_9FIRM Length = 211 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M +NIT +++T+A ++ T K KL+++F V L +K T + T+ G Sbjct: 38 MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + + D A D ID++ RQ+ K+K ++++ Sbjct: 98 IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEK 132 >UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21 Tax=Shewanella RepID=A3QBU6_SHELP Length = 124 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 + IT + E+T +RE + ++ KL ++ ++ +V++ EK +A++ + + Sbjct: 2 IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61 Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 A A+ +D+YAAI+ + KL +QL + K Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHK 90 >UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A8RDK2_9FIRM Length = 177 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M++NI G N+ +T AL E + K LE+YF D VV++V + T+ Sbjct: 1 MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + D+YAAID IDKL Q+ + K +L + Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTR 96 >UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=Rhizobiales RepID=RP5M_RHIME Length = 190 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M + ++G ++EI ++ R + + + + +YFD V ++ ++D LH++ G Sbjct: 1 MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A+ + + +A D +++ ++L ++K KLK H Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH 97 >UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Actinomycetales RepID=D1BCP0_SANKS Length = 220 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M++ + G + E+ + R K AK+EQ +V V + E + T+ Sbjct: 1 MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRQSGIRERVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A A D + A+D ++KL +L + D+ K Sbjct: 61 RDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKNR 101 >UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP Length = 178 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58 M++ IT N+++T A+++F + K+E+Y D++ + L V+K + +HV N Sbjct: 1 MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A+A D+Y AID K QL K K+K K Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSR 97 >UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT Length = 200 Score = 89.2 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEIHASAEGQ 68 +E ++ALR + + AK+++YF +V VEK+ H + + + NG ++H+S + + Sbjct: 1 MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLRNGLQLHSSEKTE 60 Query: 69 DMYAAIDGLIDKLARQLTKHKDKLKQH 95 MY++ID + K+ RQ+ ++KD++ H Sbjct: 61 SMYSSIDMALAKMERQVRRYKDRITNH 87 >UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii RepID=A9KDT2_COXBN Length = 96 Score = 89.2 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 54/95 (56%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + +TG V+I+ ALRE K +++ D I+ ++++ + K+ DA + + G Sbjct: 1 MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I+A AE DMY +D L+ KL QL+K+K K H Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDH 95 >UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO Length = 284 Score = 89.2 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 11/101 (10%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVT---------HTS 50 ++ + G ++EIT+++RE+ K K +FD + +V V + Sbjct: 81 KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKT 140 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + T++ G I + E D+YA+ID + DKL R+L K K+K Sbjct: 141 EVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEK 181 >UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LMC5_PICSI Length = 321 Score = 88.8 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L I G N ++T+A++ ++ K ++++ + + +V V L + + T Sbjct: 89 RLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVGKGPKIRRCEVT 148 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L G + A E + +YA+ID + D + R+L K K+K H Sbjct: 149 LFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKDGGH 191 >UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Gammaproteobacteria RepID=A6W0C2_MARMS Length = 105 Score = 88.4 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%) Query: 4 NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHA 63 I+G+++++T A+++ + K +K+ + D+I V V L + + ++A +H+ G EI A Sbjct: 5 KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFA 64 Query: 64 SAEGQD-MYAAIDGLIDKLARQLTKHKDKLK 93 SA +D ++ AID ++DKLA+Q+ KHK K Sbjct: 65 SASSEDRLFHAIDDMVDKLAKQIDKHKTKQS 95 >UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QBC3_CATAD Length = 237 Score = 88.1 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + + + E+T+ R V K AK+E+ + + VVL EK + TL Sbjct: 1 MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60 Query: 55 HVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I A A D Y+A+D KL QL + KD+ K H Sbjct: 61 DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIH 102 >UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XRD3_9CAUL Length = 237 Score = 88.1 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQ-VYVVLKVEKVTHTSDATLHVN- 57 MQ+ ++G +V++ EAL ++ + + + +YF+R + VV+ + D + + Sbjct: 19 MQVQVSGKHVDVGEALGSRISQELQEGVGKYFERGGENAEVVVSKDGYGFKVDCWVRLAS 78 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + + G D +AA ++KL +++ ++K +LK H Sbjct: 79 GQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDH 116 >UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29 Tax=Actinomycetales RepID=C7MXY7_SACVD Length = 226 Score = 88.1 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M + I G NVE+ E R V K A+LE+Y ++ V L E + T Sbjct: 1 MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLA 82 G + A A D Y A+D I KL Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88 >UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2 Tax=Alteromonadales RepID=Q21ND3_SACD2 Length = 118 Score = 88.1 bits (218), Expect = 9e-17, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 49/90 (54%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+N++G++VE+T+A+R KF K+ ++ ++ V V L VEK +AT G Sbjct: 1 MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 + + D+YAAI + KL L+ K Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRKG 90 >UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TA00_PHYPA Length = 297 Score = 87.7 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-------HTSDAT 53 +L I G ++E+T+A++++V K + +V V + V + T Sbjct: 89 RLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGRGERLQRCEVT 148 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L G + A E + MYA+ID + D ++R+L K K+K H Sbjct: 149 LFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGH 191 >UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LB60_RHOVA Length = 199 Score = 87.7 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 54/97 (55%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M + +TG N+++ E+LRE+ + L++Y R + ++ S +H+ +G Sbjct: 1 MTIKVTGKNIDLGESLREYALNRVESALDKYSGRSVSGQISVEKNTDGFFSHCAIHLESG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ ++ G D YA++D +++L ++L ++K ++ H Sbjct: 61 LDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH 97 >UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae RepID=C9M512_9BACT Length = 197 Score = 87.7 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHVNGG 59 M + T +N +I ++E++ K ++E++F RI + V +K +K + T NG Sbjct: 16 MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + D+ A D + L R++ +HK+ L Sbjct: 76 VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYLIDR 111 >UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group RepID=Q9ZD30_RICPR Length = 143 Score = 87.7 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56 M ++++G ++ I L+E+ K + +++Y I + + E + D + Sbjct: 1 MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I ++ D+Y A D + KL +QL K K K K H Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNH 99 >UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPI1_PARL1 Length = 193 Score = 87.3 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 MQ+ ++G+++++ +ALR T + + +YFDR V L + +D + H+ +G Sbjct: 1 MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLA 82 ++A ++YA+ + +++L Sbjct: 61 LRVNAQGTANEVYASFEAALERLE 84 >UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N462_9BACT Length = 114 Score = 87.3 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M++++TG EIT ++RE+V ++ L E + VV+ +K + + ++ Sbjct: 1 MKISVTGRQFEITPSIREYVESRIQALVEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYH 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A E D+Y + D + K+ QL ++K++ H Sbjct: 61 VVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSH 96 >UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus RepID=C7HV18_9FIRM Length = 177 Score = 87.3 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LNI G N+ + E+L+E KF +L++YF++ ++ + E ++T+ + GG Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60 Query: 61 I-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A + ID +ID L RQ+ K K KL++ Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQR 95 >UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Synergistaceae RepID=D1B9M7_THEAS Length = 180 Score = 86.9 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + NVE+ ++++ + K KLE++FDRI V + ++ + + T ++NG Sbjct: 1 MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + D+ A + + + RQ+ +HKD L Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDMLVDR 95 >UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS Length = 198 Score = 86.9 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV-----VLKVEKVTHTSDATLH 55 M L + N ++++ R+ + K ++L++Y DRI++V V + + E H T+ Sbjct: 6 MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65 Query: 56 VNGGEI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + G + A ++YAAID + D L RQ+ ++KDK Sbjct: 66 GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH 103 >UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPK4_BDEBA Length = 116 Score = 86.9 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 45/95 (47%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+LN T +++ +E+L + + A++ ++ R V K + +++ Sbjct: 1 MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKY 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 A+A G D+Y A+D +K+ +Q K + K H Sbjct: 61 FKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDH 95 >UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4 Tax=Acidithiobacillus RepID=RP5M_THIFE Length = 78 Score = 86.5 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK---VEKVTHTSDATLHVN 57 MQ+ ITG ++++T++++ + K +L +YFD ++ VVLK EK+++ D T++ Sbjct: 1 MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60 Query: 58 GGEIHASAEGQDMYAAID 75 G HA DMY ID Sbjct: 61 GHVFHAEVHDADMYTGID 78 >UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH Length = 111 Score = 86.5 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 49/82 (59%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ +T N+E +E L++FV+ K K ++ FD + V+L VEK + ++ L + Sbjct: 1 MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLA 82 I E +DMYAAID ++DK+ Sbjct: 61 IIGKEETEDMYAAIDLVMDKIE 82 >UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class) RepID=Q6AGI3_LEIXX Length = 232 Score = 86.5 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV-------EKVTHTSDAT 53 M +NI G N+ IT+ RE+ K K+ +R + + + + T Sbjct: 1 MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L + + A G D YAA D + KL ++ + KD+ K H Sbjct: 61 LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVH 102 >UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQP5_9BACE Length = 181 Score = 86.1 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 45/95 (47%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ T V + + + K KL++YF + +V VEK + + T+ G Sbjct: 1 MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + DM+A ID + + RQL K+K +L++ Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKR 95 >UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons RepID=RR30_SPIOL Length = 302 Score = 86.1 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L + G N+E+++ +R V K K + ++ + +V V L + T Sbjct: 76 KLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVT 135 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 L G I A + + +Y++ID + + R+L K KDK+ H Sbjct: 136 LFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDH 178 >UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT Length = 110 Score = 86.1 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT +++T ++RE+V +KF KLE+ + +V + E + +A + + G+ Sbjct: 1 MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + A AE +D++AAI+ L KL RQ+ +H + Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRHIHR 91 >UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IJQ7_AZOC5 Length = 198 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 M L ++G N+++ EALR+ + + +++ +YFD + + E + S+ LH++ G Sbjct: 1 MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A Q+ A D ++K+ ++L ++K +LK Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKGR 97 >UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L9_ACIC5 Length = 225 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ TG +V + A R ++ + RI +VVL EK ++ T+ + + Sbjct: 1 MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + ++AE M A+ ++K Q + K K+ Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKM 92 >UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation protein n=4 Tax=Actinomycetales RepID=Q2JEZ4_FRASC Length = 267 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + + G + + E R V AK AKLE+ I +V V L E+ + T+ Sbjct: 1 MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRLSDVCDRVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G I A A D YAA+D KLA +L + D+ +H Sbjct: 61 YSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRH 101 >UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VXE1_9CLOT Length = 183 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGG 59 M++ ITG V + + +E V K K + F V + VEK T + T+ +G Sbjct: 1 MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + +M A+D +++ L RQ+ K+K KL++ Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEK 95 >UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae RepID=A1ZNT3_9SPHI Length = 100 Score = 85.4 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLH 55 M+L + L EF+ K KLE ++DRI V L++EK H + L+ Sbjct: 1 MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + G + AA D ++ L RQL KHK+K Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96 >UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Actinobacteridae RepID=A6WEN5_KINRD Length = 256 Score = 85.0 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M++ +TG + ++ E R V K K+ Q+ R ++ V L E + T+ Sbjct: 1 MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRQASSSERVEITV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81 G + A A D YAA+D KL Sbjct: 61 RDKGPVVRAEACADDPYAALDLATTKL 87 >UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQU2_AKKM8 Length = 197 Score = 85.0 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEI 61 + ITG +VE+T+A+REFVT K + F RI +V V+L V++ S L + I Sbjct: 10 ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHITI 69 Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 AS EG DMYA ID I K+ R++ KHK +L Sbjct: 70 DASTEGTDMYACIDETITKIMRRMRKHKTRL 100 >UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04A0 Length = 177 Score = 85.0 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 54/94 (57%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ ++ N E+T+ + + + ++LE+YF+ + V + VEK T + ++ +G Sbjct: 1 MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A EG++MY +D ++ L RQ+ + ++KL+ Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLRT 94 >UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter RepID=RP5M_ACIGB Length = 113 Score = 85.0 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----------THTS 50 MQ+ I G+++ IT A+ E + +F ++ ++ D++N + V L + H + Sbjct: 1 MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60 Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89 +A + + G E+ A A DMY AI L DKL RQL KH+ Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99 >UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides RepID=D2EW39_9BACE Length = 99 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M++ I + + +E L+ FV K AKLE+++D I +V V LKV K + + V Sbjct: 1 MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 GE +A+ A+D ++ L +QL K+K+K + Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRS 98 >UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8 Length = 99 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M + I + + T L F+ K +KLEQYFD I V LKV K + L V Sbjct: 1 MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 GE A AID ++ L +QL K K+K++ Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIR 97 >UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO Length = 199 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK----LEQYFDRINQVYVVLKVEKVTHTSDATLHV 56 M+ + VE+TEAL ++ + +K L+++ D ++ V + E+ + + T H+ Sbjct: 1 MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60 Query: 57 N--GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 N I D+Y AID + D L R++ K K++L++ Sbjct: 61 NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQE 100 >UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK5_FIBSS Length = 105 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59 M + + + + L++ + + KL +++ I V+L E + + ++++ G Sbjct: 1 MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEVEHQRHCEISVNITGS 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I ASA+ ++M A+D ++++ QL K DK H Sbjct: 61 VIVASADEENMGKAVDVTLERIKVQLKKANDKQNDH 96 >UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF Length = 234 Score = 84.6 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD------ATLH 55 Q++ITG NVE+ E E V K AK+E+ + +V L+ E +D T Sbjct: 25 QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G A A+ YAA++ + K+ R L K K + Sbjct: 85 GKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRS 122 >UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Sulfurihydrogenibium RepID=B2V794_SULSY Length = 187 Score = 84.6 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF------DRINQVYVVLKVEKVTHT--SDA 52 MQ+ G N+EIT+ ++ + K +L+ Y +V VV EK H D Sbjct: 1 MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60 Query: 53 TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 +++N GG IHA E D+Y+AID +ID++ RQL + K + Sbjct: 61 DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRR 103 >UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0Q0_9FIRM Length = 176 Score = 84.6 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 52/93 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++NI+ N ++ L+E + KF+KL++YF ++++ K + +A L G Sbjct: 1 MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + +D Y A+D + KL+RQ++K K KLK Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLK 93 >UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12 Tax=Flavobacteria RepID=A0M3Z9_GRAFK Length = 100 Score = 84.2 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M++N+ N + L +F K KL+ YFD+I V KV+ K ++ L V Sbjct: 1 MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 GG+I A +D + L RQL K K+K+ H Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99 >UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM Length = 128 Score = 83.8 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVNGG 59 M IT +++T + E + K+AKLE++ + +V + +K +A++H+ G Sbjct: 1 MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ A +EG+D+YAAI L KL RQL K+ +K H Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH 96 >UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3T1_SPHTD Length = 194 Score = 83.8 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55 M + I N+ +T+AL+E++ ++ +L++ ++ ++ E+ + T+ Sbjct: 1 MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTGGEQMVAQFTIA 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + + +D++ AID I+++ RQ+ + +DK Sbjct: 61 TKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKR 97 >UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM Length = 112 Score = 83.4 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + IT NV+ +++++E V ++ ++ I +V+L+ ++AT+HV G + Sbjct: 1 MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 I A A ++YAA+D L DK+ RQL K K Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQK 91 >UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=bacterium Ellin514 RepID=B9XGM0_9BACT Length = 117 Score = 83.4 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 M+L +T +N+ +T+A+ + ++ KLE + V L + L Sbjct: 1 MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V G ++ A DMYAAID + K+ +Q+ K + K K Sbjct: 61 VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKAR 100 >UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFI2_KYTSD Length = 245 Score = 83.4 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 MQ+ +TG ++T+ R V K +L I++ V+ E + T Sbjct: 1 MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRRSEDAERIEITC 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 H + A A + Y A+D ++ K+ ++ + D+ K H Sbjct: 61 HDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVH 101 >UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PW5_SOLUE Length = 181 Score = 83.0 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD---RINQVYVVLKVEKVTHTSDATLHVN 57 M++ TG VE+ A + + A+FAK+ + D R +V+V+L +E+ H ++AT++ Sbjct: 1 MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 ++ D++ AIDG +KL +Q K + K + Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFRD 97 >UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Alphaproteobacteria RepID=B0T677_CAUSK Length = 210 Score = 83.0 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58 MQ+ I+G +V++ EALR V+ + + +YFDR VV+ E D ++ + G Sbjct: 1 MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ + G D +AA D + K+ ++ ++K +LK H Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSH 97 >UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT Length = 178 Score = 83.0 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVTHTSDATLHVNG 58 M+ NI ++ +T+ ++E + K AK+ + D + V + E+ + + T H+ G Sbjct: 1 MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + G D Y ++ + + L R++ ++K++ + Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMR 97 >UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=C6YXL0_ORYSJ Length = 321 Score = 83.0 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L + G NV++ E ++E + K + + ++ + +V V L + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 L G I A + + YA+ID + R+L K K+K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183 >UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXY8_9BACT Length = 119 Score = 83.0 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NGG 59 + I +++ITEA+R + K K++++F+ I V V L + +H + ++V G Sbjct: 3 NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGP 62 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 I A A DMY +ID ++DK+ QL KHK K++ Sbjct: 63 TIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIES 97 >UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBI5_9PORP Length = 403 Score = 82.7 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57 ++I + +EAL++F K +L ++ D I++ + L+++K + L V Sbjct: 309 NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKIAAIRLFVP 368 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 G + +A AID ID L RQ+ + K+ Sbjct: 369 GHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE 401 >UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia RepID=C6V4K5_NEORI Length = 186 Score = 82.7 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M++ ++G+ ++ +L E++T + ++++ + V L E D ++ Sbjct: 1 MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I AS E D Y A D K+ +L ++KD+LK+H Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEH 96 >UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZQ7_9FLAO Length = 100 Score = 82.3 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 M +N +V +E L E VT K KL+ +D I + V K E K + L Sbjct: 1 MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMICEIKLS 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + AS+ + AI ID + RQL K K+K+ H Sbjct: 61 APGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100 >UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRA6_9PROT Length = 197 Score = 82.3 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59 M + ITG +++ AL++ VT + +E+YFDR + V + E + + TLH+ G Sbjct: 1 MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60 Query: 60 EIHA-SAEGQDMYAAIDGLIDKLA 82 A +GQD Y A D + KL Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLE 84 >UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Nautiliaceae RepID=B9L9D3_NAUPA Length = 166 Score = 81.5 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVN-G 58 M + I G NVE+TEA+++ ++ +++E+Y I V ++ +K T + +++ Sbjct: 1 MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + +DMYAA+D DKL + L ++ DK+ + Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDY 97 >UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli RepID=A8PQ11_9COXI Length = 111 Score = 81.5 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 64/94 (68%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+ IT + +++T+AL++++ KF +LE+ + + +++ L +E + + A +H +G E Sbjct: 1 MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +A A+ +++Y AID LIDK+ +Q+ KHK K K+ Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKE 94 >UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorobiaceae RepID=Q3B2F4_PELLD Length = 130 Score = 81.1 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57 + +T + A+ E+ + L + + I +V+L +K ++ TLHV Sbjct: 35 TIKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEKNKNAEITLHVP 94 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + A G ID +D L RQL K+K+K+ Sbjct: 95 QHDFIAKESGTAYELCIDACVDALGRQLQKYKEKM 129 >UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium RepID=A9W5P1_METEP Length = 202 Score = 81.1 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%) Query: 3 LNITGNNVEITEALREFVTAKFAK-LEQYFDRINQV----YVVLKVEKVTHTSDATLH-V 56 L +TG+ +++ ALR V + A L +Y D +V L+ + + +D LH V Sbjct: 4 LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + AS D++A+ + DKL ++L ++K KLK H Sbjct: 64 TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDH 102 >UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ2_9BACT Length = 114 Score = 81.1 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56 M+L I +TE L+ F+ KFAK+ ++ + I+ V+LKV K ++ ++V Sbjct: 1 MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G H +D ++ + RQL+K+K+K + Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQR 97 >UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales RepID=C6II14_9BACE Length = 123 Score = 81.1 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M + I + + +E L+ F+ K +KLE+Y++ I +V V LKV K + + + Sbjct: 25 MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 GE +AS A+D ++ L +QL K+K+K + Sbjct: 85 PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRS 122 >UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Betaproteobacteria RepID=Q3SIX5_THIDA Length = 189 Score = 81.1 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 9/103 (8%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52 M+ L IT ++E +EAL + K KLE +F I VVL K + Sbjct: 1 MKTPLQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRI 60 Query: 53 TLHVNGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + V G EI + +D+Y A+ D RQL + +L++ Sbjct: 61 DIGVPGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRRLRR 103 >UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum bicolor RepID=C5WRX8_SORBI Length = 310 Score = 81.1 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L + G NV++++ L+E + K + + ++ + +V V L + T Sbjct: 73 RLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELGRGPKTSRCEIT 132 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 L G + A + + YA+ID + R+L K K+K Sbjct: 133 LFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK 171 >UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYI7_METI4 Length = 115 Score = 81.1 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-------KVTHTSDAT 53 MQ+ I+ V++T+AL + +KF KL + +RI V + E A Sbjct: 1 MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60 Query: 54 LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 L++ G +I A G D+Y A+D ++D+LARQL K K L Sbjct: 61 LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTD 101 >UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes RepID=C6Y270_PEDHD Length = 115 Score = 80.7 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56 M++ + + + L +F+ K KL+Q+FD+I V LK+E S+ L V Sbjct: 1 MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 GG + A + + A D I+ L +Q+TKHKDK + Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTR 97 >UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD Length = 179 Score = 80.7 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59 M+LN+ N +T+ +R KF +L++YF ++ V E + T + NG Sbjct: 1 MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 + + + AID ID L RQ+ K+K KL Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKL 93 >UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales RepID=D0LFC2_GORB4 Length = 270 Score = 80.7 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55 + +G NVEI + R +V K A+LE++ I + V L E+ + T Sbjct: 62 TVVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITAT 121 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQ 84 G + A A G++ YAA++G +DKL + Sbjct: 122 GKGPIVRAQACGENFYAALEGSLDKLESR 150 >UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales RepID=A8J8B2_CHLRE Length = 286 Score = 80.7 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK--------VEKVTHTSDA 52 ++ I G + +T+A++ +V K AK + + + +V V L K + Sbjct: 71 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 130 Query: 53 TLH-VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 T++ + G + ++YAAID + DK+ +L K K+K Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 170 >UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD Length = 196 Score = 80.7 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55 + I+G V I+EALR V K + FD VVL+V+K T++ T+ Sbjct: 3 DIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTVF 62 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V + +A DMYAAID DK++RQL K+K K+ + Sbjct: 63 VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVER 102 >UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=2 Tax=Planctomyces RepID=C1Z9P6_PLALI Length = 114 Score = 80.7 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59 MQ+ IT + I+ +E + K KL YF R+ + V + E T + + Sbjct: 1 MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHKH 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A+ G ++ + K+ +Q+ K+K+K++ H Sbjct: 61 DFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDH 96 >UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PYC3_VIBCH Length = 78 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 55/70 (78%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 MQ+NI G+++++T++++++V +KF KLE++FD IN V V+L+VEK+ ++ATLHVN E Sbjct: 1 MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60 Query: 61 IHASAEGQDM 70 IHA A+ + Sbjct: 61 IHAHADDETC 70 >UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR Length = 256 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M NI G NV IT+ +RE + K ++ + DRI ++ +T T+ Sbjct: 1 MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 H + +D+Y AID + K+ R++ K K++ Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKER 91 >UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR Length = 209 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Query: 3 LNITGNNVEITEALREFVTAKFA-KLEQYFDR--INQVYVVLKVEKV-----THTSDATL 54 + I G N+E+T AL E V + ++ + I + V+L V K H + Sbjct: 13 VIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSVSKNPKVKNGHRVEVVT 72 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 ++ G I E DMYA+ID L R+L K+KD Sbjct: 73 NLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108 >UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD Length = 125 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATL 54 M+L + + + L F+ K KL+ ++DRI V LK+ K +T + L Sbjct: 1 MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 +V GG + +G A D ID L Q+ K K+K Sbjct: 61 YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNN 100 >UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QU53_PERMH Length = 188 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 11/98 (11%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI------NQVYVVLKVEKVTHT--SDA 52 M++ G N+++TE ++ + K +L+ Y I +V V EK H D Sbjct: 1 MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60 Query: 53 TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTK 87 ++ GG IHA E D+Y+AID +ID++ RQL + Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVR 98 >UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8 Tax=Chlorobiaceae RepID=B4S5H7_PROA2 Length = 110 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57 + +T + + ++ L++ F I +V+L + + ++ T+HV Sbjct: 12 NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVP 71 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A G AID +D + RQL K+K+KL+ H Sbjct: 72 QQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAH 109 >UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Propionibacterium acnes RepID=D1YBK0_PROAC Length = 203 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M++ ++G + +++ +R V + + +E+ DR+ + VV + T + TL Sbjct: 1 MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITL 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 G + A + +D A D D+L QL K D Sbjct: 61 RAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAAD 96 >UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT Length = 177 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58 M + + + A+ E++ +F K+++ + I + + + + + A ++ G Sbjct: 1 MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + D+Y AID L D L +++ K K +++ Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVRER 97 >UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN Length = 195 Score = 79.2 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55 + I+G V +++ALR V K + FD + VVL+V+K + + T+ Sbjct: 3 DIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTVF 62 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 V + + G DMY AID +K+ RQL K+K ++ Sbjct: 63 VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVD 101 >UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA Length = 172 Score = 79.2 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 16/110 (14%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-------SD 51 M L IT +E +EAL E + KLEQ++D I +VV++ E H Sbjct: 62 MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVE-EPHRHKQHGRHFHVR 120 Query: 52 ATLHVNGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + V G I AS + +D Y A+ D RQL + D L H Sbjct: 121 VDVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTH 170 >UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT Length = 119 Score = 78.4 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 48/87 (55%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + ++G N+++TEAL++ V + + + + ++N+ VVL + LH N Sbjct: 1 MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87 + A AE DMY +I +D+L RQL K Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEK 87 >UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6 Tax=Leptospira RepID=B0SB82_LEPBA Length = 95 Score = 78.4 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 49/95 (51%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++N T +++ +EA + K ++ ++ +I V + ++ L+ +G Sbjct: 1 MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +A + +D+Y IDGL DK+ Q +KH DK QH Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95 >UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG17_9BACT Length = 123 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDATLH 55 L ITG ++++TEA+++ V K +L ++ +RI +V V L+ + + + Sbjct: 8 DLIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIE 67 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88 +NG ++ S D Y A+D L+DKL R L + Sbjct: 68 INGPTMNVSVSDPDCYKAVDLLVDKLDRMLRRR 100 >UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2 Tax=Proteobacteria RepID=A4U0N1_9PROT Length = 120 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 15/108 (13%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV----------VLKVEKVTH 48 MQ L IT + ++ +EA+ V K AKLEQ+FDRI V L + ++ Sbjct: 3 MQNPLQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESDHKNSSNLHHKGNSY 62 Query: 49 TSDATLHVNGGEIHAS---AEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 L+V G E+ E +D+YAA+ G + RQL ++ + + Sbjct: 63 LVRIDLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEYVARSR 110 >UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4 Tax=Bacteroidetes RepID=A2U255_9FLAO Length = 100 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M +N ++VE +E L + T K KL F I + V K E + L Sbjct: 1 MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTSSDNTGMICNIRLS 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V G + A A + ++I+ + L QLTK KDK+ + Sbjct: 61 VPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMSTY 100 >UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSP2_9BACT Length = 98 Score = 77.3 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M + I + L EFV K KL+++ +R V+LK++K + LH+ Sbjct: 1 MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G ++ A + G+ A+D I+ L RQ+ K+K +L++ Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK 98 >UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0T2_SALRD Length = 132 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVNG 58 Q +T +V++++ + E+ + AKLEQ++D I +V+L + T+ + V Sbjct: 30 QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQ 89 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + A AI+ +D L RQL K+K KL+ Sbjct: 90 KRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRS 125 >UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP Length = 127 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 5/98 (5%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLHV 56 ++ + G + +T+A++E + KF+ L ++ D I ++ V + + + +T+ A + + Sbjct: 12 KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEI 71 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G ++ ASAEG+D Y ID L++KL RQL + + K Sbjct: 72 GGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKD 109 >UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS Length = 211 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 MQ+ + G +++ +ALR VT + L +YF VV+ + +D +HV G Sbjct: 1 MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKL 81 + + E + Y A D +K+ Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKV 83 >UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associated protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M1S9_GRAFK Length = 99 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M+ N++ +E L F K KLE +D I + + K + + ++ L Sbjct: 1 METIFEFVNIDKSENLEAFTQKKLNKLETKYDWIVRANIFFKRDENKKPNGYITEVRLSA 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G EI A ++ A+I L RQ K K K+ H Sbjct: 61 PGPEIFAQSDENSFEASIAETTRDLDRQCEKRKAKMSTH 99 >UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487B8_COLP3 Length = 111 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M++ I+G++VEITE +++ + KFAK+ +++ I + + VE + T G + Sbjct: 1 MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 + +A + +Y AI + KL L K Sbjct: 61 VTVNASDKQLYVAIAKVAKKLQSALAHRKG 90 >UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment) n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL Length = 192 Score = 76.5 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M++ + G + E++ R + +K AK+EQ R +V V++ E + T+ Sbjct: 1 MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRQSGSSEKVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I A A D YAA+D + +L +L + +D+ K H Sbjct: 61 VDKGPVIRAEACADDAYAALDVALGRLLERLRRARDRRKDH 101 >UniRef50_A3U9H3 Site-specific recombinase, phage integrase family/ribosomal subunitinterface protein n=3 Tax=Flavobacteria RepID=A3U9H3_9FLAO Length = 100 Score = 76.5 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55 M++N +V +E L F T K KL +D I + V K E ++ L Sbjct: 1 MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENTSEPDTGMIAEIRLS 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A + + A+ + ++L QL K K +K + Sbjct: 61 APGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRKASMKTY 100 >UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Actinomycetales RepID=A0LVS3_ACIC1 Length = 322 Score = 76.5 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHVNG 58 +T VE+ +R +V K AK+E+ ++ +V V + E+ + T G Sbjct: 1 MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRLADSCERVELTCISAG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I A A + M AA D +KL +L K D+ + H Sbjct: 61 PPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVH 97 >UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR29_ACIBL Length = 198 Score = 76.5 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 44/94 (46%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + G IT A+R+ V + KL + + V+L VEK + ++ T+ + Sbjct: 1 MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + E DM AI ++ + +Q KH ++ + Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQALKHNNRRRN 94 >UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae RepID=C6X055_FLAB3 Length = 96 Score = 76.5 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M++++ + L E + K +KLE Y+D+I + V LKVE K T++ L V Sbjct: 1 MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVENKSDKENKTAEIILAV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 G +I ++D + R L K K+ Sbjct: 61 PGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE 94 >UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ Length = 309 Score = 76.1 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 2 QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53 +L + G NV++ E ++E + K + + ++ + +V V L + T Sbjct: 82 RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141 Query: 54 LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 L G I A + + YA+ID + R+L K K+K Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183 >UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Campylobacterales RepID=D1B1B4_SULD5 Length = 171 Score = 76.1 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 5/99 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M +I G ++TE ++ ++ L +Y I V V+ + K + + +++ Sbjct: 1 MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADEKNGKKGFSVEFAINM 60 Query: 57 NGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + + +D+YAA+D +++ + L +H DKL Sbjct: 61 AHKNTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNS 99 >UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9I9_9CLOT Length = 180 Score = 75.7 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62 +NIT E+ + ++ + + ++++ V L + D T+ G I Sbjct: 2 INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIR 61 Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 A + + +ID +D L R+L K K L Sbjct: 62 GEAAAEKIEPSIDFAVDDLKRKLRKLKTSLVD 93 >UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC Length = 180 Score = 75.7 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M L+ITG E+T++++ +V + F L +Y I V+ + K D +++ Sbjct: 1 MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADERNGKKGFIVDFLINL 60 Query: 57 -NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I + +D+YAAID + ++ ++ L + DK H Sbjct: 61 AKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTH 100 >UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB Length = 190 Score = 75.7 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 14/107 (13%) Query: 1 MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52 MQ L +T +++ +ALR + + +L+ FD I +V L+ H Sbjct: 1 MQTPLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRQGNLYEVTI 60 Query: 53 TLHVNGGEIHASAEGQDMYA------AIDGLIDKLARQLTKHKDKLK 93 L V G E+ D+ A AI + RQL HK ++ Sbjct: 61 ELRVPGTELVVHPTKGDVPAHEHPQVAIRDAFTAIERQLRAHKQRIS 107 >UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria RepID=B6EGD2_ALISL Length = 120 Score = 75.3 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLE--QYFDRINQVYVVLKVEKVTHTSDATLHVNG 58 M++ ITGNN++IT +RE + KF KLE ++ D I + V K H +A + + G Sbjct: 1 MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G++ ASAE +D++ I + KL RQL K + K + Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEAR 97 >UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=3 Tax=Campylobacterales RepID=Q30TJ3_SULDN Length = 180 Score = 75.3 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----LKVEKVTHTSDATLHV 56 M +++TG +VE+T+A++ + A L +Y I V V+ K K + +++ Sbjct: 1 MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIASTQTKKGKDHSVVEFVINL 60 Query: 57 NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 I QD+YAAID + + + + D+ H Sbjct: 61 AHKNSIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGH 100 >UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=B5D3P6_9BACE Length = 113 Score = 75.3 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56 M++ I + + ++ L F+ K KLE++ D I +V V LKV K + + Sbjct: 15 MEVRIQSIHFDASDKLEAFIQKKAEKLEKFCDNIMKVEVSLKVVKPETAMNKEAGVRVLA 74 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 E +A +ID ++ L++QL K K+KL+ Sbjct: 75 LNSEFYAEKISDTFEESIDVCMEALSKQLLKAKEKLQ 111 >UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Thermotogaceae RepID=A6LJQ7_THEM4 Length = 176 Score = 75.3 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 48/93 (51%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M+ I+ VE TEAL+ ++ + K+++ + ++ V L+ + + +H G + Sbjct: 1 MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 + S + D+Y ID L D +++ + +D ++ Sbjct: 61 LVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVR 93 >UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7IG48_THEAB Length = 176 Score = 75.0 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 46/95 (48%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M ++ ++T A++ ++ +F K+++ + + + L+ + + A +H G + Sbjct: 1 MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKD 60 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + D+Y ID L D ++L + ++ ++ Sbjct: 61 LVVTETSDDIYNLIDILSDAFEKKLKREREYVRTR 95 >UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUF5_CHIPD Length = 99 Score = 75.0 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55 M + I + + L + V+ K KL ++DRI V V LK++ + H ++ +H Sbjct: 1 MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHQVKDKIAEIKVH 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + ++ E + + D D + Q+ K K+K Sbjct: 61 IPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK 96 >UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria RepID=B8GU63_THISH Length = 192 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 16/109 (14%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56 + +T N++ + A+ + V A+ KL Q+ D I VV++ + + L V Sbjct: 9 VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68 Query: 57 NGGEIHASAE------GQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95 GE+ AS E +D+Y A+ D + RQ L K + ++K H Sbjct: 69 PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGRVKHH 117 >UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RH54_9RHOB Length = 192 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 11/103 (10%) Query: 4 NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLHVNG 58 +T +++ ++A+ V + KLE I + V ++ H D +L + G Sbjct: 6 EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKGTEYIIDISLQMPG 65 Query: 59 GEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +H D+Y AI + + RQL + +D+ K Sbjct: 66 STLHIDRHPGDDHAHTDIYVAIRDAFNAMERQLRRWQDQHKGR 108 >UniRef50_A2TTF7 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=4 Tax=Bacteroidetes RepID=A2TTF7_9FLAO Length = 103 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M + I ++ +EAL ++ K KL + +D + + V++K E + L V Sbjct: 1 MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKETAQTHHNAICEIELSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G I A ++ ++ A+ I L QL K K + Sbjct: 61 PGPRIFAQSQEKNFEVAVKETISDLDVQLKKRKAQFTN 98 >UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Aquificaceae RepID=B4U9J0_HYDS0 Length = 200 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 18/110 (16%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYF----DRINQVYVVLKVEKVTH-------- 48 MQ+ G + EITE LR FV +K +K ++ + ++ V + + H Sbjct: 1 MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60 Query: 49 ---TSDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 D +++ GG +HA E +D+Y AID ++D++ RQL K K++ Sbjct: 61 SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKERR 110 >UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTB3_BACTU Length = 181 Score = 73.8 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M L +TG +V +TE ++ + K L ++ V V ++VEK T ++ NG Sbjct: 4 MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEK-RLTISVSVPFNGEL 62 Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 I+A ++ +D Y A+D ++DK+ RQ+T KD Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKD 92 >UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacteraceae RepID=Q0BUA9_GRABC Length = 236 Score = 73.4 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58 M + ++G +++++AL+E V ++ + +YFD+ + V + D LH G Sbjct: 35 MHITVSGKQIDLSDALQERVASQLDTISRKYFDQALEAQVTFSRLRSFFICDINLHAGRG 94 Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + E D A D + +A++L +++ ++ H Sbjct: 95 LILRGEGEAADANGAFDDAAEHIAKRLRRYRRRMNAH 131 >UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB Length = 180 Score = 73.4 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV-N 57 L+I G N ++T+ ++ ++ L + I + + + K T + +HV Sbjct: 4 LHIYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADERNGKKGFTFEFDIHVAK 63 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + + + +D+YAAID + + + L ++ DK+K H Sbjct: 64 KGNVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNH 101 >UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00W70_OSTTA Length = 184 Score = 72.3 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 10/101 (9%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDA 52 ++ + G ++EIT A+ E+V +K + + D I +V V V H ++ Sbjct: 51 KMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTEV 110 Query: 53 TL-HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92 T+ G +HA G+++YA ID D + R + KHK+K Sbjct: 111 TVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKH 151 >UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Flavobacteriales RepID=A8UI75_9FLAO Length = 101 Score = 72.3 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M++N N L +F+ + KL+ ++D+I Q V LKVE K +A + V Sbjct: 1 MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVENTSDKENKIFEAKVSV 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 G + + D I L RQ+ K K+KL+ Sbjct: 61 PGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLRS 98 >UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella burnetii RepID=A9KBC8_COXBN Length = 183 Score = 72.3 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%) Query: 1 MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52 MQ+ IT N++ T A+ + + K KL QY D+I ++V+++ K Sbjct: 6 MQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRI 65 Query: 53 TLHVNGGEIHAS-AEGQDMYAAIDGLID----KLARQLTKHKDKLKQH 95 L + G E + E +D+Y AI D K+ ++ +K H Sbjct: 66 NLTLPGKEFAVNRNEVEDLYVAIRDAFDDMARKVEEEMRMRMGHVKTH 113 >UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magnetospirillum RepID=Q2VZ29_MAGSA Length = 158 Score = 71.9 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 18/111 (16%) Query: 1 MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----------LKVEKVTH 48 MQ+ IT + V+ ++A+ + K AKLE FDRI VV L + Sbjct: 39 MQIPLQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVIEQHHKNTSNLHHKGEPF 98 Query: 49 TSDATLHVNGGEIHAS------AEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 L V G E+ +D+Y A+ + RQL ++ D+ + Sbjct: 99 HIRLALTVPGDELVVKRDPKDSHVNEDIYVALREAFAGMERQLKEYVDRSR 149 >UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AQL9_9FLAO Length = 99 Score = 71.9 bits (176), Expect = 7e-12, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56 M ++I + +EA+ E ++AK +L +D I + V K E + L Sbjct: 1 MTIDIQYVQMPTSEAMNELLSAKLDRLATKYDWIIRAQVHFKQENDPTGKGKICEMELSA 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G I A + D A I L +QL+K K + + Sbjct: 61 PGPRIFAQSNEDDFEKAAAKTIKDLEKQLSKRKAIMNKR 99 >UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174494B Length = 115 Score = 71.5 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55 MQ++I+ N+++T A+ ++ + +E I +VVL + K A L Sbjct: 1 MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 V G +IHA D+YAA+D LARQL K K L Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTALVD 98 >UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Actinobacteridae RepID=D2RAS6_GARVA Length = 223 Score = 71.5 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54 M++ ITG + +I + R+ V +K ++ +V +VL E + T+ Sbjct: 1 MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPRQADTAKRVEITV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLID 79 I A A D ++A+D +D Sbjct: 61 VAGSTVIRAEASSTDQFSALDMALD 85 >UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis group RepID=Q3YS76_EHRCJ Length = 197 Score = 71.1 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYF--DRINQVYVVLKVEKVTHTSDATLH-V 56 M + IT ++T+ ++ +V + ++F D V V L + S ++ + Sbjct: 1 MNIIITARGFDVTDNIKTYVERSVQDYITKFFADDSTVSVKVTLSKDANLFNSTISISDI 60 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90 I S Y AID ID L +L KHK Sbjct: 61 KSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKT 94 >UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Bifidobacterium RepID=B8DT99_BIFA0 Length = 228 Score = 70.7 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54 M + +TG +++I + R+ V +K ++ +V VVL E + T+ Sbjct: 1 MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRLHDTAVRVELTV 60 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81 + A A D +A+D +DKL Sbjct: 61 VAGSTVVRAEASSLDEVSALDLALDKL 87 >UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms RepID=A1SY46_PSYIN Length = 189 Score = 70.3 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 16/109 (14%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56 L IT ++ ++A+ + K AKL++++D I +VV++ + L + Sbjct: 5 LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64 Query: 57 NGGEIHA------SAEGQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95 GE+ +D Y AI + RQ + K + K+K H Sbjct: 65 PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTH 113 >UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH Length = 122 Score = 70.3 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59 M + IT E+ + L + + F K +++ V +K+E + + G Sbjct: 1 MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 +I + E ++ A + D+L RQL KHK+K H Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAH 96 >UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa RepID=D2NS77_9MICC Length = 213 Score = 70.3 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHVN 57 ++NI G N+++TE L E+V K K Q D + + V + + + T+ Sbjct: 4 EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHLGGESIRVEITVVGT 63 Query: 58 GGEIHASAEGQDMYAAIDGLIDK 80 G + + A+G D +A D K Sbjct: 64 GPVLRSEAQGHDKFAVFDETYGK 86 >UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Campylobacterales RepID=C3XP50_9HELI Length = 186 Score = 70.3 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 13/107 (12%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------------KVTH 48 MQ IT + E+T+A+++++ + LE+Y I V++ + K T Sbjct: 1 MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQEKKGSKKGEKKKKRTF 60 Query: 49 TSDATLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 D TL + + + +D YAA+D I ++ + L ++ DK + Sbjct: 61 GIDITLSLAHSNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNK 107 >UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SAX9_OSTLU Length = 132 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%) Query: 5 ITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDATL- 54 + G ++EIT A+ E+ AK K + D I +V V H ++ T+ Sbjct: 3 VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62 Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G +HA G+++YA ID D + R + KHK+K Sbjct: 63 MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHS 101 >UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT Length = 155 Score = 70.0 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 8/102 (7%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55 +L ++G ++E+T +L+ FV K +L ++ +RI ++ + L+ + + + Sbjct: 38 ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95 +NG +AS + + A++ L++KL R + + K+++H Sbjct: 98 INGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRFFKVQRH 139 >UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=5 Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1 Length = 179 Score = 69.6 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55 M++ IT N + R ++ K ++ + +I++ + L E+ ATL+ Sbjct: 1 MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRSQADHFILKATLN 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 ++A +++ A D ++ L +Q+ K K++ Sbjct: 61 TGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKME 98 >UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3V7_9NEIS Length = 181 Score = 69.2 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56 L I N+ +EAL + K KLEQ+F R+ V + + + + Sbjct: 5 LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVGLPHRHSNQGEHYFVQIDMTA 64 Query: 57 NGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKH 88 G E+ ++ +D+Y A+ D R L H Sbjct: 65 PGTEVVSNRQNHEDVYVALRDAFDAARRMLEDH 97 >UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G3G6_SORC5 Length = 191 Score = 69.2 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATL 54 MQ+ +T ++ + +L E + + K+E++ D IN VV++ + + L Sbjct: 1 MQVELTFRHIGKSPSLEELIREQANKIERFNDHINSCAVVVERDHASMGTGGEYRVRVDL 60 Query: 55 HVNG-GEIHASAEGQD--MYAAIDGLIDKLARQLTKHKDKLKQ 94 HV G EI + + AA+ + + RQL K D+ + Sbjct: 61 HVAGKHEIVSEERAARNLLPAAVRDVFQRAGRQLKKLADEHRS 103 >UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XP15_9FLAO Length = 120 Score = 69.2 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M N ++V + AL +F + KL +D I + V K E + L Sbjct: 20 MNYNFEYHDVAASAALEDFTKEQLDKLVNKYDFIVRADVFFKTENTSSDETGKIAGIRLS 79 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G + A + + ++ +L QL K KDK+K H Sbjct: 80 APGPRLFADHSSKSFHESVKEATRELNIQLKKRKDKMKSH 119 >UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula baltica RepID=Q7UMU4_RHOBA Length = 113 Score = 68.4 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-TSDATLHVNGG 59 MQ+N++ + + + V K KL + +DR+N + V + +E + + + V Sbjct: 1 MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60 Query: 60 E-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + A AE + AA+D I K +QL K K+K +H Sbjct: 61 DDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEH 97 >UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP Length = 126 Score = 68.4 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 7/101 (6%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLHV 56 ++ ++G ++E+T +L+ FV K +L ++ +RI +V V L+ + + + + Sbjct: 8 EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEI 67 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95 +G +++A + + + AI LIDKL R L+K K+++H Sbjct: 68 HGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRH 108 >UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJ85_9BACT Length = 99 Score = 68.4 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57 ++ N L+EF + KL ++++I +++ KVE + ++ + + Sbjct: 3 NVHFRAVNYTADVTLKEFAQQRLGKLTTFYNQIIEMHCFTKVENTSDKINKWAELKIEIP 62 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93 G + + AID D R L + K+K+K Sbjct: 63 GENVVVKKMCKTFEEAIDSAADSAERILKRRKEKIK 98 >UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLA7_9PLAN Length = 104 Score = 68.4 bits (167), Expect = 7e-11, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 17 REFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHVNGGE-IHASAEGQDMYAAI 74 +E ++ K KL + F+RI V V + +E + + + A+ + A+ Sbjct: 6 QETISEKVQKLTRLFERITSVDVTVDLEHNDKPGVELRVTAERTDDFVAADSCSSLLGAL 65 Query: 75 DGLIDKLARQLTKHKDKLKQH 95 D I K+ +QL KHK++LK H Sbjct: 66 DNSIHKMEQQLRKHKERLKDH 86 >UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Marinomonas RepID=A6VX39_MARMS Length = 130 Score = 68.0 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH---TSDATLHVNG 58 LNI+G++V+ E ++E V K L + ++I + V L EK +A++H+ G Sbjct: 3 TLNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPG 62 Query: 59 GEIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKLKQH 95 ++ A + + + A+D L+ KL +QL KHK K Sbjct: 63 HDLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAKHAGR 100 >UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Campylobacterales RepID=Q30TL0_SULDN Length = 109 Score = 68.0 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60 M + + ++ ++ + + A ++Y I V V LK EK + +H+ E Sbjct: 1 MNVQVHAKDITLSANAKGHIETAIAAFKKYSLDITTVNVNLKKEKKGVLVEFDIHIAHSE 60 Query: 61 -IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + +D+ AID ID+ ++ L + D++ H Sbjct: 61 PVVINQADEDLDTAIDLAIDRASKALRRLHDRVVSH 96 >UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7L313_METC4 Length = 216 Score = 67.6 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 3 LNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61 + + +++ + ALRE A ++ +YF R+N V + + + + I Sbjct: 10 IVVRSSSIGLGAALRERARAGVERVAAKYFGRLNAATVYFSRDGWGYRCTVNIDMGALRI 69 Query: 62 H-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 + G +A D + K A+QL + K L+ Sbjct: 70 VTGESLGFCCHAVFDAAMRKAAKQLRRLKRALRD 103 >UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT Length = 126 Score = 67.6 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 51/99 (51%), Gaps = 5/99 (5%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56 +L + G ++ +T+A++ + +L ++ RI+++ + +++++ + + + Sbjct: 12 KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRVHSGPQMFNAKGIIEL 71 Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 G ++ AS +D Y ++ LI+KL R + K LK Sbjct: 72 RGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALKGR 110 >UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW75_CHLT3 Length = 109 Score = 67.6 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%) Query: 2 QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH----TSDATLHVN 57 + T + + + +Y+ I +++L +K ++ HV Sbjct: 12 NVQFTLRHSSNHRDIEAYAKDAIKAFHKYYTDILDCHIILDHQKNDKEQNKIAEIKAHVP 71 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91 + +G AID + + +QL KH+DK Sbjct: 72 SHTFVSKEQGPTYEVAIDTCVSNICKQLKKHRDK 105 >UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE Length = 117 Score = 67.3 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55 M++ + G N +T+A RE + +F K+ + + Q+ V L ++ ++ATL+ Sbjct: 1 MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPSIPEAQVAEATLY 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88 + G + A AE DM AI+ ++L +Q+ +H Sbjct: 61 LKGVTLRARAEAGDMGHAINLCEEQLFKQVKRH 93 >UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M130_ACIFD Length = 182 Score = 66.9 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55 M +++ +TE R V + A+LE+Y +V V ++ ++ T Sbjct: 1 MAVDLRCRGCTLTEQQRAHVEDRIARLEKYLGAPERVEVHVERAGNPANPDRVVTEVTYV 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 V+ + A G+ + D ++L R+L + K +L Sbjct: 61 VSKAVVRARGVGETELESFDRAEERLKRRLERLKGRLVAR 100 >UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5 RepID=B3RGS8_9CAUD Length = 105 Score = 66.9 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59 MQ+ ITG NVEITE + F++ K +KLE+ N V +KVE A + N G Sbjct: 1 MQIEITG-NVEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNSGK 59 Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK 87 E+ A A+G D Y A D ++D ARQL K Sbjct: 60 EVIAKAKGSDAYEATDRMVDVAARQLAK 87 >UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DL86_AZOVD Length = 189 Score = 66.5 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 16/109 (14%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56 + I + +E + A+ + + +LE++++RI V H L + Sbjct: 5 VQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHQGRLYQVKVHLTL 64 Query: 57 NGGEIHA------SAEGQDMYAAIDGLIDKLARQL----TKHKDKLKQH 95 G+IH+ +D Y AI + RQL K + ++K H Sbjct: 65 PDGDIHSSQAHHDEHAHEDPYVAIRDSFRAVRRQLEDYARKRRAEVKSH 113 >UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplasma marginale RepID=B9KIL8_ANAMF Length = 104 Score = 66.5 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 1 MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVN 57 M + IT + T +++ +V + L +Y V VV+ E T+ ++H + Sbjct: 1 MNVIITCRGYKATASIKSYVEDSISSHLGKYLHDSPQINVRVVMAKEAHMFTACVSIHED 60 Query: 58 GGEIH-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 E AS + +Y A+D + +A L K+K++ Sbjct: 61 HHEFVNASKSAETVYKAVDAAVTHVANGLRKYKEEKTD 98 >UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=pseudomallei group RepID=Q2SWQ3_BURTA Length = 212 Score = 65.7 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%) Query: 1 MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52 M+L ++ + + AL + V AKLE+Y I + V + K + Sbjct: 104 MKLPLEVSIQGMPRSAALEDAVARHAAKLERYCADIIRCRVSVILDDKHKHQGKPFGVHI 163 Query: 53 TLHVNGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + + G EI ++ +D+Y A+ R L K + Sbjct: 164 DVTIPGHEIVSNRESDEDVYVALRDAFSNAERMLDDAVGKRRDR 207 >UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14ME0_SPICI Length = 125 Score = 65.7 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKLEQY----FDRINQVYVVLKVEKV-THTSDATLH 55 M+ I N+ IT+A+ + + F KL +Y + + V + E + + Sbjct: 1 MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTAIDIR 60 Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + A D Y A+D + K+ QL K K K + Sbjct: 61 GRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDR 100 >UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntrophobacterales RepID=A0LQL3_SYNFM Length = 176 Score = 65.7 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Query: 3 LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56 L I+ +NV I++A E + K KL++ D++ V +++ + L V Sbjct: 5 LEISAHNVHISDATEELIREKAEKLDRINDKLIGCRVRVEIPHRSQRSGILYSVRIELAV 64 Query: 57 NGGEIHASAE-GQDMYAAIDGLIDKLARQLTKHKDKLK 93 G +I E +D++AAI G + R+L + +K + Sbjct: 65 PGRDIVIKREPDEDLHAAIVGSFETAQRRLKEVAEKQR 102 >UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S30EA n=10 Tax=Sphingomonadales RepID=C8WD98_ZYMMN Length = 200 Score = 65.3 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 1 MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHT-SDATLHV-N 57 M + I+G+ ++ ALRE+V +++ +YF + V + D +H Sbjct: 1 MDIRISGHQIDTGAALREYVNDHLSQIVSKYFPKCLSASVTFGNRRHAIISCDIIIHAMR 60 Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95 + AS +D +AA D K+ +QL +H +L+ Sbjct: 61 DIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQTR 98 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.193 0.567 Lambda K H 0.267 0.0587 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 849,567,616 Number of Sequences: 3077464 Number of extensions: 45017909 Number of successful extensions: 157123 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 659 Number of HSP's successfully gapped in prelim test: 242 Number of HSP's that attempted gapping in prelim test: 155734 Number of HSP's gapped (non-prelim): 933 length of query: 95 length of database: 1,040,396,356 effective HSP length: 64 effective length of query: 31 effective length of database: 843,438,660 effective search space: 26146598460 effective search space used: 26146598460 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 88 (38.0 bits)