>ss_pred
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>ss_conf
93899995403798899999999999997378822699999975996099999984898899986089999999999999999999998676269
>batch____
MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH
>UniRef50_A1RNM6(1-95:95) SSU ribosomal protein S30P / sigma 54 modulation protein n=98 Tax=Gammaproteobacteria RepID=A1RNM6_SHESW  E=1e-22 s/c=1.13 id=52% cov=101%
MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGEVFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH
>UniRef50_Q0EWV9(26-120:212) Ribosomal subunit interface protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWV9_9PROT  E=1e-18 s/c=0.99 id=46% cov=101%
MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGINIHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRH
>UniRef50_B6BVF2(1-95:107) Ribosomal subunit interface protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVF2_9PROT  E=2e-15 s/c=0.88 id=44% cov=101%
MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSEIFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDH
>UniRef50_UPI0000E87FF9(1-95:104) Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FF9  E=3e-14 s/c=0.83 id=42% cov=101%
MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQDIHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNH
>UniRef50_C0QJ65(1-95:179) SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ65_DESAH  E=8e-13 s/c=0.79 id=35% cov=101%
MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLKIHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRH
>UniRef50_Q97F93(1-95:174) Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales RepID=Q97F93_CLOAB  E=2e-12 s/c=0.77 id=41% cov=100%
MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVILRGEETNNDMYASIDIVGDKLERQVRKQKTKLER-
>UniRef50_B5EEZ7(1-95:182) Sigma 54 modulation protein/ribosomal protein S30EA n=11 Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB  E=2e-12 s/c=0.77 id=36% cov=101%
MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH
>UniRef50_Q1DDE8(1-95:221) Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1DDE8_MYXXD  E=3e-12 s/c=0.77 id=35% cov=101%
MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWVLRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSH
>UniRef50_A3EWH8(1-93:176) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Leptospirillum RepID=A3EWH8_9BACT  E=5e-12 s/c=0.77 id=40% cov=99%
MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRLIHAESVTNDLYASLDLAVDKLERQLVRFKEKIR--
>UniRef50_B0VJD6(1-95:178) Ribosome-associated, sigma 54 modulation protein (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJD6_9BACT  E=1e-11 s/c=0.75 id=35% cov=101%
MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFSLQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDH
>UniRef50_Q0B0B5(1-92:181) Sigma 54 modulation protein / SSU ribosomal protein S30P n=10 Tax=Clostridiales RepID=Q0B0B5_SYNWW  E=1e-11 s/c=0.77 id=35% cov=98%
MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGIILRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRL---
>UniRef50_A9KDT2(1-95:96) Ribosome-associated factor Y n=6 Tax=Coxiella burnetii RepID=A9KDT2_COXBN  E=8e-11 s/c=0.72 id=34% cov=101%
MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGSTINAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDH
>UniRef50_D2RIZ4(1-92:181) Ribosomal subunit interface protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIZ4_ACIFE  E=3e-10 s/c=0.72 id=31% cov=98%
MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIVLRAQETSDNMYASIDQCVEKIERQIHKYKTRL---
>UniRef50_B6EGD2(1-98:120) Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria RepID=B6EGD2_ALISL  E=1e-09 s/c=0.66 id=39% cov=100%
MKVEITGNNIDITPGIRERIEGKFKKLEEkrHLDIIGRHASVTKRSNGKHKVEAYVTIAGGKVAASAEQEDLFGTIREMYQKLERQLDKlqHKSEARR-
>UniRef50_C1I442(1-95:178) 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I442_9CLOT  E=2e-08 s/c=0.64 id=32% cov=100%
MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGIILRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSR-
>UniRef50_C7HV18(1-96:177) Ribosomal subunit interface protein n=2 Tax=Anaerococcus RepID=C7HV18_9FIRM  E=2e-08 s/c=0.63 id=33% cov=101%
MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGTILRAEEVNDNFStGIDKVIDALVRQIRKQKTKLQRN
>UniRef50_D0LNA7(1-97:207) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1  E=3e-08 s/c=0.62 id=33% cov=101%
MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERgYKHRVDVTMQLHNGLTVAGREtSESMHSSIDLVTAKIERQVRRYKDKLRTH
>UniRef50_A6FEI0(1-96:128) Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM  E=1e-07 s/c=0.60 id=34% cov=101%
MTFEITSKEIKVTAPMHEKLAMKYAKLERFnIPMINPHVTISKDKNNVKKLEASIHLPQGQLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH
>UniRef50_A2C0K6(1-100:194) Light repressed protein A-like protein n=5 Tax=Prochlorococcus marinus RepID=A2C0K6_PROM1  E=6e-07 s/c=0.56 id=34% cov=101%
MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQeadvhLSVARNPRVPQQTAEVTVFANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH
>UniRef50_B2KAZ3(1-97:178) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP  E=8e-07 s/c=0.56 id=33% cov=100%
MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDkKINQKAQIIVHVgNKNTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKS-
>UniRef50_B4U9J0(1-109:200) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Aquificaceae RepID=B4U9J0_HYDS0  E=1e-06 s/c=0.50 id=37% cov=97%
MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETgedqTEIVVTISSARAKHTDDninktSIYRVDidiyiksngGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKER----
>UniRef50_C2BSF1(13-113:219) Possible ribosome-associated inhibitor protein Y n=4 Tax=Actinomycetaceae RepID=C2BSF1_9ACTO  E=2e-06 s/c=0.53 id=33% cov=101%
MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIEltvlgkGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH
>UniRef50_A0M3Z9(1-99:100) Sigma-54 modulation protein-like ribosome-associated protein n=12 Tax=Flavobacteria RepID=A0M3Z9_GRAFK  E=9e-06 s/c=0.52 id=32% cov=101%
MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQntsgKENKITEILLSVPGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH
>UniRef50_D1B9M7(1-92:180) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Synergistaceae RepID=D1B9M7_THEAS  E=3e-05 s/c=0.54 id=26% cov=98%
MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMVMRGEDYAPDLRKAFEKSLKNIERQVKRHKDML---
>UniRef50_Q0BX30(1-97:198) Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BX30_HYPNA  E=4e-05 s/c=0.51 id=29% cov=101%
MQIQITGRHMELGEALRGRIEEGLeAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSGIVlQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH
>UniRef50_Q1VZQ7(1-100:100) Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZQ7_9FLAO  E=5e-05 s/c=0.49 id=37% cov=97%
MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMI----CEIKLSAPGQNLFAssnekgfevAITNTIDDVKRQLQKKKEKMSSH
>UniRef50_B0SB82(1-95:95) Sigma 54 modulation protein / S30EA ribosomal protein n=6 Tax=Leptospira RepID=B0SB82_LEPBA  E=9e-05 s/c=0.51 id=27% cov=101%
MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNNFNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH
>UniRef50_D2LB60(1-97:199) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LB60_RHOVA  E=9e-05 s/c=0.50 id=30% cov=99%
MTIKVTGKNIDLGESLREYALNRVeSALDKYSGR--SVSGQISVEKNTDGffSHCAIHLESGlDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH
>UniRef50_A4U0N1(7-105:120) Sigma 54 modulation protein/ribosomal protein n=2 Tax=Proteobacteria RepID=A4U0N1_9PROT  E=0.0002 s/c=0.48 id=39% cov=88%
--LQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESD---HKNSSNLHhkgnsylvridlnVPGSELvvkRESDEHEDVYAALKGAFQAMERQLKEY-------
>UniRef50_UPI000174494B(1-96:115) hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174494B  E=0.0002 s/c=0.49 id=35% cov=97%
MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKErfrvkAHLAVAGPDIHADVADADLYAALDKASSVLARQLRKRKTAL---
>UniRef50_A1T5Y3(48-147:250) Sigma 54 modulation protein/ribosomal protein S30EA n=18 Tax=Corynebacterineae RepID=A1T5Y3_MYCVP  E=0.0003 s/c=0.47 id=34% cov=99%
-EVAVTGRNVEVPDHFRSYVAEKLSRLER-FDRTLYLFdVELYHEKNRRQRKNCQHVeitakgRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH
>UniRef50_A7VXE1(1-95:183) Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VXE1_9CLOT  E=0.0004 s/c=0.49 id=29% cov=100%
MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGMVYRSEQtAPEMNDALDEVVNALGRQIRKNKCKLEK-
>UniRef50_B1LBB6(1-98:178) Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ  E=0.001 s/c=0.46 id=28% cov=101%
MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEkdgKNQYVVKFNMNLKGNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH
>UniRef50_Q7W3J9(1-95:112) Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria RepID=Q7W3J9_BORPA  E=3e-26 s/c=1.25 id=41% cov=101%
MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKDIHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSH
>UniRef50_A7HIE3(1-95:185) Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Anaeromyxobacter RepID=A7HIE3_ANADF  E=4e-26 s/c=1.24 id=40% cov=101%
MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFLLRGTARSADMYASIDQAADKIERQLKKHKEKLTNH
>UniRef50_B0TYD3(1-95:102) Sigma54 modulation protein n=17 Tax=Francisella RepID=B0TYD3_FRAP2  E=1e-25 s/c=1.23 id=47% cov=101%
MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSEFVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRDN
>UniRef50_C9KNJ3(3-96:181) Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ3_9FIRM  E=1e-25 s/c=1.24 id=36% cov=99%
-TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIlLRGEESTMDMYTSIDLVVEKLERQIHKQKTKLAR-
>UniRef50_P28613(1-100:116) Probable sigma(54) modulation protein n=84 Tax=cellular organisms RepID=RP5M_RALEH  E=3e-24 s/c=1.12 id=38% cov=101%
MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHkekdrRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGH
>UniRef50_Q5XAQ7(3-100:182) Ribosome-associated factor Y n=66 Tax=Lactobacillales RepID=RAFY_STRP6  E=1e-22 s/c=1.09 id=38% cov=100%
-KFSIRGENIEVTEAIRDYVESKLTKIEKYFakDQEIDARVNLKVYRERsSKVEVTIPLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIaKKH
>UniRef50_C7N909(1-100:106) Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Fusobacteriaceae RepID=C7N909_LEPBD  E=7e-22 s/c=1.05 id=38% cov=101%
MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKsegpvHKADGLVFASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDH
>UniRef50_Q28VX1(45-141:235) Sigma 54 modulation protein / SSU ribosomal protein S30P n=46 Tax=Bacteria RepID=Q28VX1_JANSC  E=3e-21 s/c=1.05 id=30% cov=101%
MRYQISGKQIEIGQALQTHVQDNLGGIaQKYAERPTDATVVFSKSGPEFACETTVHLStGLTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDH
>UniRef50_Q0ATI7(1-97:209) Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM  E=7e-21 s/c=1.04 id=26% cov=101%
MHIQVVSKGIDVSGALREQILGRVEdGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSGVmLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNH
>UniRef50_A7VDW4(3-87:170) Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VDW4_9CLOT  E=8e-21 s/c=1.19 id=34% cov=91%
-------KIIDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVSDDMYVSIDLVLEVIERQVNRHKKKL---
>UniRef50_C8WMZ8(1-100:191) Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE  E=3e-20 s/c=1.00 id=35% cov=98%
MSITVTGRKMPVTDALREYAEEKIGNSMKVMDiDPLVAEIVLFVEKNpanprPAVCEVTLRTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKV---
>UniRef50_A6G444(1-87:200) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT  E=1e-19 s/c=1.12 id=31% cov=92%
---------MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLrNGLQLHSSEKTESMYSSIDMALAKMERQVRRYKDRITNH
>UniRef50_A1T5Y3(48-147:250) Sigma 54 modulation protein/ribosomal protein S30EA n=18 Tax=Corynebacterineae RepID=A1T5Y3_MYCVP  E=4e-19 s/c=0.95 id=29% cov=100%
-EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRrqrkncQHVEITAKGRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH
>UniRef50_C7HV18(1-96:177) Ribosomal subunit interface protein n=2 Tax=Anaerococcus RepID=C7HV18_9FIRM  E=3e-18 s/c=0.97 id=32% cov=101%
MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGTIlRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQRN
>UniRef50_UPI00016C04A0(1-93:177) sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04A0  E=1e-17 s/c=0.98 id=27% cov=99%
MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQVLRAELEGENMYKILDDVVAILERQVLRFRNKLR--
>UniRef50_C7H0Q0(1-93:176) Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0Q0_9FIRM  E=1e-16 s/c=0.94 id=31% cov=99%
MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTLFRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLK--
>UniRef50_A9W5P1(4-102:202) Ribosomal subunit interface protein n=7 Tax=Methylobacterium RepID=A9W5P1_METEP  E=9e-16 s/c=0.85 id=33% cov=99%
--LRVTGHGLDLGTALRGRVEDRMAAtLAKYLDPhmsgSCTGHVTLRRDGAAYRTDCVLHlVTGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDH
>UniRef50_D1C3T1(1-97:194) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3T1_SPHTD  E=2e-15 s/c=0.86 id=20% cov=98%
MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTggeqmVAQFTIATKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKR---
>UniRef50_Q9ZD30(1-99:143) PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group RepID=Q9ZD30_RICPR  E=4e-14 s/c=0.80 id=26% cov=101%
MIISVSGQHISIGSNLQEYSKEKItQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSGkhnIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNH
>UniRef50_C7RDL1(1-93:179) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD  E=8e-14 s/c=0.84 id=32% cov=98%
MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGRILRSETSDETYpTAIDRNIDGLLRQVRKNKTKL---
>UniRef50_C2MBI5(309-401:403) Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBI5_9PORP  E=5e-13 s/c=0.81 id=27% cov=95%
-NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKsdatRGKIAAIRLFVPGHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE-----
>UniRef50_Q487B8(1-89:111) Ribosomal subunit interface protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487B8_COLP3  E=1e-12 s/c=0.83 id=28% cov=95%
MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEKVTVNASDKQLYVAIAKVAKKLQSALAHRK------
>UniRef50_B3RGS8(1-87:105) Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5 RepID=B3RGS8_9CAUD  E=2e-12 s/c=0.84 id=44% cov=92%
MQIEITG-NVEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNsGKEVIAKAKGSDAYEATDRMVDVAARQLAK--------
>UniRef50_A4U0N1(3-105:120) Sigma 54 modulation protein/ribosomal protein n=2 Tax=Proteobacteria RepID=A4U0N1_9PROT  E=4e-12 s/c=0.71 id=38% cov=94%
MQnpLQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVaiesdhknssNLHHKGNSYLVRIDLNVPGSELvvkRESDEHEDVYAALKGAFQAMERQLKEY-------
>UniRef50_B5JG17(8-105:123) Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG17_9BACT  E=6e-12 s/c=0.73 id=31% cov=98%
-DLIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECvygkggSEHEFIAKGHIEINGPTMNVSVSDPDCYKAVDLLVDKLDRMLRR-RSRLQR-
>UniRef50_B6IW92(1-84:211) Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS  E=9e-12 s/c=0.85 id=28% cov=87%
MQVTVKGKQLDVGDALRSHVTDTISALvAKYFGNPLDATVVISRDAHLFKADIQVHVgRGILLQSYGEATEPYPAFDDAAEKVA-------------
>UniRef50_C0E9I9(2-93:180) Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9I9_9CLOT  E=7e-11 s/c=0.74 id=22% cov=96%
--INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIRGEAAAEKIEPSIDFAVDDLKRKLRKLKTSL---
>UniRef50_A3ZLA7(6-86:104) Probable sigma-54 modulation protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLA7_9PLAN  E=5e-10 s/c=0.81 id=29% cov=84%
----------------QETISEKVQKLTRLFERITSVDVTVDLEHNDKPgVELRVTAERTdDFVAADSCSSLLGALDNSIHKMEQQLRKHKERLKDH
>UniRef50_B7RH54(6-112:192) Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RH54_9RHOB  E=5e-10 s/c=0.61 id=25% cov=98%
---EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKgteyiIDISLQMPGSTLHIDRHpgddhaHTDIYVAIRDAFNAMERQLRRwqdqHKGRPEIH
>UniRef50_Q3YS76(1-99:197) Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis group RepID=Q3YS76_EHRCJ  E=2e-09 s/c=0.64 id=26% cov=100%
MNIIITARGFDVTDNIKTYVERSVqDYITKFFadDSTVSVKVTLSKDANLFNSTISISdIKSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKtEKINK-
>UniRef50_C0A867(12-108:126) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT  E=1e-08 s/c=0.63 id=22% cov=98%
-KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRvhsgpQMFNAKGIIELRGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALK--
>UniRef50_C8WD98(1-96:200) Sigma 54 modulation protein/ribosomal protein S30EA n=10 Tax=Sphingomonadales RepID=C8WD98_ZYMMN  E=2e-08 s/c=0.63 id=26% cov=99%
MDIRISGHQIDTGAALREYVNDHLSQIvSKYFPKCLSASVTFGNRRHAIIsCDIIIHAmRDIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQ--
>UniRef50_C0BJ85(3-98:99) Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJ85_9BACT  E=2e-08 s/c=0.62 id=24% cov=83%
---------------LKEFAQQRLGKLTTFYNQIIEMHCFTKVENTSDKinkwAELKIEIPGENVVVKKMCKTFEEAIDSAADSAERILKRRKEKIK--
>UniRef50_Q14ME0(1-99:125) Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14ME0_SPICI  E=7e-08 s/c=0.59 id=25% cov=100%
MEYKIRSKNIIITDAMDQHLVDTFNKLLKYkqVNENDLVHVDIEFTKENNIVihtAIDIRGRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQED-
>UniRef50_C1DL86(1-113:189) Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DL86_AZOVD  E=1e-07 s/c=0.51 id=26% cov=101%
MQkpVQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHhqgrlyQVKVHLTLPDGDIHSsqahhdEHAHEDPYVAIRDSFRAVRRQLedyaRKRRAEVKSH
>UniRef50_A9G3G6(1-108:191) Cold shock protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G3G6_SORC5  E=1e-07 s/c=0.53 id=28% cov=101%
MQVELTFRHIGKSPSLEELIREQANKIERFNDHINSCAVVVERDHasmgtgGEYRVRVDLHVAGkHEIVSEERAARnlLPAAVRDVFQRAGRQLKKladeHRSEVKAH
>UniRef50_B3CQ21(1-101:116) Probable sigma(54) modulation protein n=2 Tax=Orientia tsutsugamushi RepID=B3CQ21_ORITI  E=3e-07 s/c=0.56 id=25% cov=100%
MNIIISGspQYNSVKFNLNQYVNRKIINVaNKYFDNLKAPNVHFSKEEHNqfkcHIVVNPITKQHRIINSTGYSNDVFASFDLARVKLEQQLRRYKSKLKD-
>UniRef50_Q1D1Y2(1-102:119) Ribosomal subunit interface protein n=2 Tax=Cystobacterineae RepID=Q1D1Y2_MYXXD  E=1e-06 s/c=0.54 id=19% cov=100%
MKVLLRGVHLNLSDALKSYVDEHLVRhIERFADDEaAEIDISLvdtngPKGGMDKECRVTVRLPGlSSVHVTETADSLFPAIDASRDRLETSLKRMLGKRRD-
>UniRef50_B9Z3V7(5-108:181) Cold-shock DNA-binding domain protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3V7_9NEIS  E=1e-06 s/c=0.52 id=26% cov=99%
--LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVglphrhSNQGEHYFVQIDMTAPGTEVVSNRQnHEDVYVALRDAFDAarrmLEDHVRIRRGETKQH
>UniRef50_A4BJM4(1-101:115) Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJM4_9GAMM  E=1e-05 s/c=0.51 id=24% cov=100%
MQIEIRSKNIDMTPSLRDYVRRRLSfALGARAGQIQRVQVMLSdingpKGGNDKHCRILVNVPYIkDVVIEDCQTELKGAIDRAAARTSRTLTKRLMKLQK-
>UniRef50_A5G2U9(5-113:186) Cold-shock DNA-binding protein family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2U9_ACICJ  E=1e-05 s/c=0.47 id=22% cov=99%
--LQITFKDIDRSPALEARIREKAEALSRFEARILRCHVIIEAPHRHHhkgklyraRIEIAVPRGDIVINRESpenhAHEDPYVAVrdafDAAVRKLEDHARRLDDAVKHH
>UniRef50_B7L313(10-103:216) Putative uncharacterized protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7L313_METC4  E=2e-05 s/c=0.54 id=23% cov=95%
--IVVRSSSIGLGAALRERARAGVERVaAKYFGRLNAATVYFSRDGWGYR--CTVNIDMGALRI-VTGESLgfccHAVFDAAMRKAAKQLRRLKRALRD-
>UniRef50_A0LCJ5(1-98:103) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LCJ5_MAGSM  E=2e-05 s/c=0.51 id=23% cov=100%
MELKLEGRQMDIGNELRDRITTRLQTLDQRFGPITHARVSIERKshNNEQRAEVKtvINVPGNTISSTKEAATVIPAVNEALDTLTMELQTWAEKNKK-
>UniRef50_Q1D2Z7(1-87:121) Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D2Z7_MYXXD  E=4e-05 s/c=0.57 id=26% cov=85%
MRVEIRARNIPLTETLRTYAERRVRfALDRLSDRVKEVVVRLEdangpKGGVDQVCRVALRLeHGRELAIESSDTNLLAAIDRTLER---------------
>UniRef50_B8HME4(1-116:207) Cold-shock DNA-binding domain protein n=8 Tax=Cyanobacteria RepID=B8HME4_CYAP4  E=4e-05 s/c=0.42 id=26% cov=100%
MKVppEITYRDVPKNAAIESLVQEKITKLERVCDHISSCHIAIEKihdrprrgSPYRVRLDITVP-PSHELVAESNpgEENQYVELDTVIrdafQKAERQLRelsrqqRQSDRIASH
>UniRef50_B4UF98(5-114:195) Cold-shock DNA-binding domain protein n=4 Tax=Anaeromyxobacter RepID=B4UF98_ANASK  E=6e-05 s/c=0.44 id=27% cov=99%
--LQLAWIHVEPSEPLAERVREAVRRLERFHGRITGCTVALEApsrhhrnTGAQYRVRIELRFPGGravVGRAPPRSrdrADLYTAVNAAFRDVRRQLedrqRRMDGRVKAH
>UniRef50_Q2RYB7(1-114:126) Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB7_RHORT  E=0.0001 s/c=0.42 id=24% cov=99%
MQIpvQIVFRGIDHSDAVEERIREKAAKLEQFHKNITACRVVvemhhkntshVHKRGEPFLISVQVSVPGEDLNAvssHGKDADLKAhedvgiALRDAFESMERQLRDIAERKR--
>UniRef50_Q2SWQ3(104-210:212) Sigma 54 modulation protein, putative n=24 Tax=pseudomallei group RepID=Q2SWQ3_BURTA  E=0.0002 s/c=0.43 id=25% cov=100%
MKlpLEVSIQGMPRSAALEDAVARHAAKLERYCADIIRCRVSVilddkhKHQGKPFGVHIDVTIPGHEIVSnRESDEDVYVALRDAFSNAERMLDdavgKRRDRARQ-
>UniRef50_D2QHG3(11-101:113) Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHG3_9SPHI  E=0.0003 s/c=0.51 id=26% cov=92%
-RLSINAVNITVDDAFRDRIAQALVKLRRYYSgDLITAEVFLRVEAHGGPNDKSLRivygVPGTGAFAEEEGDNWDTMLHTVTGKLKHQLER--------
>UniRef50_Q2IHD0(34-135:167) Putative sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaeromyxobacter RepID=Q2IHD0_ANADE  E=0.0006 s/c=0.45 id=23% cov=98%
MKLVIHSHHLTLPPDlgafLRKHVTRPLARLQD--DSASELSVHLgdarrKKGGVDQECRLSFRMPGaRTLHVESVQDDLHTALLDAAERLKRLVKRELEKMRS-
>UniRef50_B1C667(29-86:173) Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C667_9FIRM  E=0.0008 s/c=0.78 id=20% cov=62%
---------------------------DKYFPKDPKANIMISEIRGLVTTEITVTVDSTFLRVEVSDRDVRNAADKAIEKLEAQI----------
>UniRef50_Q0A6G4(1-95:113) Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH  E=4e-24 s/c=1.18 id=48% cov=101%
MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNRLHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDH
>UniRef50_D1V7P2(1-101:283) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia sp. EuI1c RepID=D1V7P2_9ACTO  E=2e-22 s/c=1.05 id=31% cov=101%
MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRmadvreRVELTVYTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDH
>UniRef50_B5JSL3(1-97:117) Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria RepID=B5JSL3_9GAMM  E=2e-22 s/c=1.09 id=52% cov=101%
MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHvkGELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDH
>UniRef50_D0LNA7(1-97:207) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1  E=1e-21 s/c=1.07 id=32% cov=101%
MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGyKHRVDVTMQLhNGLTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTH
>UniRef50_A8TSN7(10-106:202) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSN7_9PROT  E=4e-21 s/c=1.05 id=22% cov=101%
MKISVQGKQLDVGDTLRQRIESTIESITaKYFANPIEATVTLSRQGSEFRADVGVHIgKGISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDH
>UniRef50_Q5SIS0(1-104:186) Ribosomal subunit interface protein n=5 Tax=Thermaceae RepID=Q5SIS0_THET8  E=5e-21 s/c=0.97 id=33% cov=101%
MNIyKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHvekkaRAEIQVDLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRyvgKRH
>UniRef50_B1LBB6(1-98:178) Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Thermotogaceae RepID=B1LBB6_THESQ  E=2e-20 s/c=1.02 id=29% cov=101%
MEYRITGKGVEISEAIKNYLEKRLDKIDRviYDDDLVSFNVRIEKDgKNQYVVKFNMNLKGNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH
>UniRef50_B4RCJ5(13-109:222) Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae RepID=B4RCJ5_PHEZH  E=4e-20 s/c=1.02 id=29% cov=101%
MEVQVTGKHVDVGEALRSRVADELSAsIEKYFDRGGGADVVVSREGNAFKVDCAVTLAsGQQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDH
>UniRef50_B9Y7S1(1-98:178) Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B9Y7S1_9FIRM  E=7e-20 s/c=1.01 id=35% cov=101%
MKFEIVGKNVSITEAMRQKIERKLSFLDKYLliDPETRARVVVRTYPLTQKIEVTIPTKVGILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLsRRH
>UniRef50_B5YF17(1-99:179) Ribosomal subunit interface protein n=2 Tax=Dictyoglomus RepID=B5YF17_DICT6  E=4e-19 s/c=0.97 id=37% cov=98%
MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEdwkdgSKRHRVEVTIKANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKL---
>UniRef50_A1SGL6(1-96:207) Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ  E=4e-18 s/c=0.96 id=35% cov=96%
MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLqltalsKGPVIRAEAMAADKMAALDLALDKMAAQMRRASD-----
>UniRef50_A1SRN9(1-91:136) Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Psychromonas RepID=A1SRN9_PSYIN  E=5e-18 s/c=1.01 id=35% cov=94%
MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDKIFAHAQNDDLYVAIGQLFQKLERQLTKY-------
>UniRef50_Q310S7(11-105:190) SSU ribosomal protein S30P / sigma 54 modulation protein n=15 Tax=Desulfovibrionales RepID=Q310S7_DESDG  E=1e-17 s/c=0.96 id=31% cov=99%
MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSenLELQVLLSVDKFRHKAEVQCTGEGLNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK--
>UniRef50_A6W0C2(5-95:105) Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Gammaproteobacteria RepID=A6W0C2_MARMS  E=7e-17 s/c=0.97 id=36% cov=94%
---KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFASASSEDrLFHAIDDMVDKLAKQIDKHKTK----
>UniRef50_B2V794(1-103:187) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Sulfurihydrogenibium RepID=B2V794_SULSY  E=5e-16 s/c=0.83 id=38% cov=98%
MQVEHVGKNIEITDFIKAYTEHKLERLKHYLkdldvaPDSVRVRVVYDFEKHRHrnRVDIDVYLNtpgGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRR---
>UniRef50_B4S5H7(12-109:110) Sigma 54 modulation protein/ribosomal protein S30EA n=8 Tax=Chlorobiaceae RepID=B4S5H7_PROA2  E=4e-14 s/c=0.81 id=24% cov=100%
-NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYEnnklAEVTVHVPQQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAH
>UniRef50_C1RNF7(1-83:192) SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment) n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL  E=4e-14 s/c=0.95 id=29% cov=82%
MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRqsgsseKVELTVVDKGPVIRAEACADDAYAALDVA------------------
>UniRef50_A6DK82(1-87:119) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT  E=8e-14 s/c=0.90 id=32% cov=93%
MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKINLDAHAETDDMYKSIADAVDRLDRQLEK--------
>UniRef50_B0MSP2(1-98:98) Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSP2_9BACT  E=1e-13 s/c=0.79 id=29% cov=100%
MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKdhelGNKVATINLHIPGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK-
>UniRef50_D1B1B4(1-99:171) Ribosomal subunit interface protein n=3 Tax=Campylobacterales RepID=D1B1B4_SULD5  E=5e-13 s/c=0.76 id=22% cov=100%
MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADekngKKGFSVEFAINMAHKnTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNS-
>UniRef50_A3U9H3(1-98:100) Site-specific recombinase, phage integrase family/ribosomal subunitinterface protein n=3 Tax=Flavobacteria RepID=A3U9H3_9FLAO  E=8e-13 s/c=0.76 id=27% cov=99%
MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENtsepdTGMIAEIRLSAPGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRKASMK--
>UniRef50_C7PUF5(1-96:99) Putative sigma-54 modulation protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUF5_CHIPD  E=2e-12 s/c=0.77 id=25% cov=97%
MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHqvkdkIAEIKVHIPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK----
>UniRef50_A8UI75(1-98:101) 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Flavobacteriales RepID=A8UI75_9FLAO  E=4e-12 s/c=0.74 id=29% cov=100%
MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVEntsdKENKIFEAKVSVPGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLRS-
>UniRef50_A9KBC8(6-99:183) Ribosome-associated factor Y n=7 Tax=Coxiella burnetii RepID=A9KBC8_COXBN  E=1e-11 s/c=0.76 id=31% cov=91%
MQVplQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHqgklynVRINLTLPGKEFAVNRnEVEDLYVAIRDAFDDMARKV----------
>UniRef50_B8DT99(1-87:228) Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Bifidobacterium RepID=B8DT99_BIFA0  E=3e-11 s/c=0.80 id=26% cov=86%
MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRlhdtavRVELTVVAGSTVVRAEASSLDEVSALDLALDKL--------------
>UniRef50_C0ADT6(38-139:155) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT  E=3e-11 s/c=0.68 id=24% cov=100%
-ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQqtrdpsQRFIAKGHMQINGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRffKVQRH
>UniRef50_UPI0001C315AE(1-90:117) sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE  E=5e-11 s/c=0.76 id=29% cov=91%
MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPsipeaQVAEATLYLKGVTLRARAEAGDMGHAINLCEEQLFKQV----------
>UniRef50_B1ZUV3(8-108:126) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP  E=9e-11 s/c=0.67 id=28% cov=100%
-EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSkeavaTRFKAKGHVEIHGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHmyKVRRH
>UniRef50_B9KIL8(1-98:104) Putative uncharacterized protein n=2 Tax=Anaplasma marginale RepID=B9KIL8_ANAMF  E=8e-10 s/c=0.66 id=24% cov=100%
MNVIITCRGYKATASIKSYVEDSIsSHLGKYLHDSpqINVRVVMAKEAHMFTACVSIHEDHHEFVnASKSAETVYKAVDAAVTHVANGLRKYKEEKTD-
>UniRef50_Q14ME0(1-99:125) Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14ME0_SPICI  E=2e-09 s/c=0.64 id=24% cov=100%
MEYKIRSKNIIITDAMDQHLVDTFNKLLKYkqvnENDLVHVDIEFTKENNiVIHTAIDIRGRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQED-
>UniRef50_A4CQ98(2-81:89) Sigma-54 modulation protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CQ98_9FLAO  E=3e-09 s/c=0.78 id=31% cov=79%
-----------------EFTQRRLDKLEQFYDRVIRAEVFLKVenisEKENKVAEIKMQVPKDTFVVKKQCKSFEEAVDSACSSLERKLVKKKRK----
>UniRef50_A5G2U9(5-113:186) Cold-shock DNA-binding protein family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2U9_ACICJ  E=4e-09 s/c=0.57 id=26% cov=99%
--LQITFKDIDRSPALEARIREKAEALSRFEARILRCHVIIEAPHRHHhkgklyRARIEIAVPRGDIVINREspenhaHEDPYVavrdAFDAAVRKLEDHARRLDDAVKHH
>UniRef50_B4UF98(5-114:195) Cold-shock DNA-binding domain protein n=4 Tax=Anaeromyxobacter RepID=B4UF98_ANASK  E=5e-09 s/c=0.57 id=28% cov=99%
--LQLAWIHVEPSEPLAERVREAVRRLERFHGRITGCTVALEAPSRHHrntgaqyRVRIELRFPGGRAVVgrapprSRDRADLYTAVNAAFRDVRRQLedrqRRMDGRVKAH
>UniRef50_B1ZU16(12-89:131) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZU16_OPITP  E=3e-08 s/c=0.76 id=29% cov=79%
-KLVIRGIRLWLTDALRSTIETKAERLFRHEPRIIRVRVDLDREHRNgvalFVAKGRIELHGPDLLASVVSNDAYKSID--------------------
>UniRef50_A8V5D5(8-73:158) Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V5D5_9AQUI  E=2e-07 s/c=0.86 id=39% cov=62%
----------------------------------VNVRVTYDFEKHRHrnRVDIDIYFNtpgGGVIHAWEESNDLYTAIDFVVDEVERQLVRLKARR---
>UniRef50_Q1IU45(1-100:348) Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IU45_ACIBL  E=3e-07 s/c=0.56 id=21% cov=100%
MNVHISYKGLEKTPDVESTVKLHLKKLERrlqvFRPELVSLHgsVLQKSPRAGFVVALNLKLPTTDIAAEQANPNSAVAVKAAFDSLIGQISRHKGALRN-
>UniRef50_Q2IHD0(34-135:167) Putative sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaeromyxobacter RepID=Q2IHD0_ANADE  E=1e-06 s/c=0.54 id=19% cov=100%
MKLVIHSHHLTLPPDLGAFLRKHVTRpLARLQDDsASELSVHLgdarrKKGGVDQECRLSFRMPGaRTLHVESVQDDLHTALLDAAERLKRLVKRELEKMRS-
>UniRef50_Q11EM9(1-108:194) Cold-shock protein, DNA-binding n=1 Tax=Chelativorans sp. BNC1 RepID=Q11EM9_MESSB  E=4e-05 s/c=0.46 id=23% cov=96%
MQVplQIAFHKAEKSDWAEQEIRARVDKLQTYHDRIIGCRVTVDQRARNvegtlppvVRIEISLPGTAPVIVAYEpdrlqqkyQSPDLGNAINDAFNLAERRLAQIKE-----
>UniRef50_UPI00016A5540(1-97:379) putative RNA polymerase, sigma 28 subunit, FliA/WhiG family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A5540  E=0.0005 s/c=0.47 id=17% cov=94%
MKTAISYRNISelARPDLKGLIGNLLDRhlqphLSHFPAELVRLRATLERSGHRslYRARLRLGLPSTTLTCSDESPELGKALERSFAELERQLERH-------
>UniRef50_A6CVQ4(1-96:109) Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVQ4_9VIBR  E=0.0007 s/c=0.47 id=15% cov=100%
MNIHFNTQSIVLSESMRSHCVTKADHLFAVHPQATEIFVSIIHHRsyGQYDVELKVHAEHQWCFVKHSGDEFYHVAAEAFSAMTHKLQKQKTKVKR-
>UniRef50_Q2RLX7(16-109:190) Sigma 54 modulation protein / SSU ribosomal protein S30P n=12 Tax=Firmicutes RepID=Q2RLX7_MOOTA  E=1e-23 s/c=1.17 id=32% cov=100%
MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYILRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNK-
>UniRef50_B0K3A9(1-95:181) Sigma 54 modulation protein/ribosomal protein S30EA n=12 Tax=Clostridia RepID=B0K3A9_THEPX  E=5e-23 s/c=1.14 id=36% cov=100%
MNITVSGKNgMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGIIFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKN-
>UniRef50_A0LJZ9(1-94:180) Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM  E=6e-23 s/c=1.15 id=38% cov=100%
MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLRINGAEETDDMYSAIDKLADTLEGQVKKGKEKVRR-
>UniRef50_D1VUS0(1-94:176) Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUS0_9FIRM  E=8e-22 s/c=1.11 id=33% cov=100%
MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTILRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKK-
>UniRef50_Q6MED7(16-109:211) Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MED7_PARUW  E=1e-20 s/c=1.06 id=34% cov=100%
-NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKIQSQAATPDMYASIDKAIARLEAQIRRYKSKIQDH
>UniRef50_P0AD51(1-91:113) Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria RepID=RAIA_ECO57  E=1e-20 s/c=1.10 id=39% cov=97%
MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHK----
>UniRef50_D1R7C2(16-109:212) Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA  E=7e-20 s/c=1.04 id=34% cov=100%
-NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKIKSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDH
>UniRef50_D2BPB3(3-98:185) Ribosome-associated factor Y n=15 Tax=Firmicutes RepID=D2BPB3_LACLK  E=2e-19 s/c=1.01 id=37% cov=99%
-KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDghEVTAYVNLKVYSEKRaKVEVTLPAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNR-
>UniRef50_A5WCB7(1-104:132) Sigma 54 modulation protein / SSU ribosomal protein S30P n=3 Tax=Psychrobacter RepID=A5WCB7_PSYWF  E=9e-19 s/c=0.91 id=36% cov=100%
MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDnhrtdashsgKNNHKAEALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRIDR-
>UniRef50_A8RDK2(1-96:177) Putative uncharacterized protein n=5 Tax=Bacteria RepID=A8RDK2_9FIRM  E=9e-18 s/c=0.95 id=34% cov=100%
MKVNIYGKNITVTPALSEKIEKKLNHLEKYFmiDDSVVANVVVRVYPNKQKIEVTIPTKYAVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTR-
>UniRef50_Q1AVJ5(1-100:189) Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD  E=1e-17 s/c=0.91 id=29% cov=97%
MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDdrsVARAEVELIHERNPSIaasevAETTLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGR----
>UniRef50_B0S0M8(1-95:179) 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna RepID=B0S0M8_FINM2  E=5e-17 s/c=0.94 id=35% cov=100%
MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILdKGVVLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQK-
>UniRef50_P24694(1-78:78) Probable sigma(54) modulation protein (Fragment) n=4 Tax=Acidithiobacillus RepID=RP5M_THIFE  E=4e-16 s/c=1.10 id=36% cov=80%
MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKhlpHEKLSNVVDITVNAPGHVFHAEVHDADMYTGID--------------------
>UniRef50_A9BI17(1-99:199) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO  E=5e-16 s/c=0.86 id=29% cov=99%
MEYKVYTKEVELTEALENYIEKRMSKpdhlLKKHPDIVSPSDVRITKERGIYKVEITTHINplSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQ--
>UniRef50_C9M512(16-108:197) Ribosomal subunit interface protein n=2 Tax=Synergistaceae RepID=C9M512_9BACT  E=8e-16 s/c=0.91 id=27% cov=98%
MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFvTVEITADANGVVLRGEQRDPDLRKAFDLALKVLERRIRRHKEYL---
>UniRef50_A8J8B2(71-170:286) Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales RepID=A8J8B2_CHLRE  E=6e-15 s/c=0.82 id=27% cov=96%
-RIIIQGRKLPVTDAIKLYVEEKVAKaVANFSHTLKEVDVTLSarggdtgtHGKKEQKVEVTIYtLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK----
>UniRef50_C0QU53(1-98:188) Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QU53_PERMH  E=1e-14 s/c=0.82 id=35% cov=93%
MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIdvaddsVEVRVTYAFEKHRHrnRVDIDIYFKtpgGGVIHAWEESNDLYSAIDFVIDEVERQLVR--------
>UniRef50_C5WRX8(73-171:310) Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum bicolor RepID=C5WRX8_SORBI  E=2e-14 s/c=0.81 id=25% cov=96%
-RLIMQGRNVKLSDKLKEHIEDKVGRaVSKHCHLVREVDVRLSARGGElgrgpktSRCEITLFSKrHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK----
>UniRef50_A2TTF7(1-98:103) Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=4 Tax=Bacteroidetes RepID=A2TTF7_9FLAO  E=1e-12 s/c=0.75 id=27% cov=95%
MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKEtaqtHHNAICEIELSVPGPRIFAQSQEKNFEVAVKETISDLDVQLKKRK------
>UniRef50_Q00W70(51-151:184) Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00W70_OSTTA  E=1e-11 s/c=0.70 id=32% cov=97%
-KMLVQGLHLEITPAIDEYVRSKIGRACSHVDsrDIREVDVRCsarggegSKGGVEHKTEVTVLMtRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKH---
>UniRef50_D2RAS6(1-85:223) Ribosomal subunit interface protein n=15 Tax=Actinobacteridae RepID=D2RAS6_GARVA  E=2e-11 s/c=0.82 id=25% cov=84%
MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPrqadtaKRVEITVVAGSTVIRAEASSTDQFSALDMALD----------------
>UniRef50_A0LQL3(1-102:176) Cold-shock protein, DNA-binding n=2 Tax=Syntrophobacterales RepID=A0LQL3_SYNFM  E=1e-10 s/c=0.66 id=28% cov=99%
MKlpLEISAHNVHISDATEELIREKAEKLDRINDKLIGCRVRVEIPHRSQRsgilysVRIELAVPGRDIVIKREpDEDLHAAIVGSFETAQRRLKEVAEKQR--
>UniRef50_A5G2U9(5-108:186) Cold-shock DNA-binding protein family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2U9_ACICJ  E=4e-10 s/c=0.63 id=25% cov=98%
--LQITFKDIDRSPALEARIREKAEALSRFEARILRCHVIIEAPHRHHhkgklyRARIEIAVPRGDIVINREspenhaHEDPYVAVRDAFDAAVRKLEDHARRLDD-
>UniRef50_B5JNT4(6-102:126) Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNT4_9BACT  E=3e-09 s/c=0.65 id=29% cov=97%
-NVEIVGRHLELTESLKAKVNEVVEKLYEHDSGITRIRVELEMElhskthQNEFIAKGHVVDRHDHFDASALGDDLYQAIGSLAEKLDR-LIRNKSRRR--
>UniRef50_D2QEF9(1-96:121) Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QEF9_9SPHI  E=8e-09 s/c=0.64 id=24% cov=96%
----MHAVKFTADQSLLDFIQAKLDKLDTFHDRIISGEVFLRLEGadsnkvKEKIVEVRLLLPGKELFVKEHDKSFESATDRVMDVLKDKLVRFKQKRND-
>UniRef50_A9CX73(1-75:181) Probable sigma54 modulation protein n=2 Tax=Rhizobiales RepID=A9CX73_9RHIZ  E=1e-08 s/c=0.81 id=24% cov=78%
---------MEIGESFRTRIDDHVSgAVRKYFDGGFSSHVTVEKSGSRFQADCKIHLDtGVVLHATGEAQDPQPAFDAAAERIE-------------
>UniRef50_A6W1F5(1-101:137) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1F5_MARMS  E=3e-07 s/c=0.56 id=26% cov=99%
MRIKVKARRLALTKSLKAYVKRRLSfALNSRYDNIQQVIVTLTdvngpKGGEDKHCQVLVKINGQkEVVISEQQADMYSAIDSAAGRTSRTVTRRIERLQ--
>UniRef50_C3XBE7(1-100:119) Predicted protein n=2 Tax=Oxalobacter formigenes RepID=C3XBE7_OXAFO   E=8e-07 s/c=0.55 id=21% cov=99%
MAPTIITKGIKAGEAIQEYIQERMDTmLSHTQNSIDYIMIRLSdtnriKSGFKKRCLIQLSLPGMSpIVVTEFAADMKSAFDSATRRASRLLNKTLSKAK--
>UniRef50_B4D6Y7(13-108:372) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y7_9BACT  E=9e-07 s/c=0.57 id=23% cov=95%
----IVNRHLHPGVTVREKLAEKIAALSqllvHFPPDSIHLQVVLDKmaKKGLYEVRLTLRLPSNILHAEKTGTDLLVTINTAVNALKREVMSLKADLR--
>UniRef50_C6QHD0(5-109:121) Cold-shock DNA-binding domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QHD0_9RHIZ  E=2e-06 s/c=0.51 id=25% cov=98%
--VQISFEHLEHSGAIEHRVREQLEKLEQFCGRLTAARVVVAREQRRHHkgdnysVRLLLSVPGAEDIAithnttdTGRHEDIHVVISDAFAAARRRLQDFVGKRQR-
>UniRef50_P47908(1-97:193) Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2   E=4e-20 s/c=1.02 id=38% cov=97%
MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFaTKVDVHLSVANNaritdKHKAEVTVYANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK----
>UniRef50_Q8DKM6(1-100:209) LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB   E=4e-20 s/c=0.99 id=37% cov=100%
MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNvINEVDVHLSVARNRstapkQTAEVTVFVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEKRQD-
>UniRef50_C9XIR4(1-95:183) Putative RNA-binding protein n=7 Tax=Clostridium RepID=C9XIR4_CLODC  E=2e-19 s/c=1.02 id=33% cov=100%
MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIaTVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQD-
>UniRef50_B5Y948(8-102:190) Ribosomal subunit interface protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y948_COPPD  E=2e-19 s/c=1.02 id=36% cov=97%
-KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERqarePVFDVEVTLDANGRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKL---
>UniRef50_C3WBJ3(1-97:183) Sigma(54) modulation protein n=5 Tax=Fusobacterium RepID=C3WBJ3_FUSMR  E=7e-19 s/c=0.98 id=35% cov=99%
MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSavklKTGNYHTAEVLAYLGGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIR--
>UniRef50_A5CWW3(1-95:102) Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria RepID=A5CWW3_VESOH  E=1e-18 s/c=0.99 id=39% cov=101%
MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGADLFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNH
>UniRef50_C2BSF1(13-113:219) Possible ribosome-associated inhibitor protein Y n=4 Tax=Actinomycetaceae RepID=C2BSF1_9ACTO  E=2e-18 s/c=0.93 id=33% cov=101%
MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRqadtaeRIELTVLGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH
>UniRef50_B0U6N0(1-95:105) Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae RepID=B0U6N0_XYLFM  E=5e-18 s/c=0.97 id=36% cov=101%
MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRTLNANASASTMYAAIDLVADKLDRLILKHKEKKCDH
>UniRef50_A9WMP6(26-126:267) Ribosome-associated factor Y n=6 Tax=Micrococcineae RepID=A9WMP6_RENSM  E=5e-18 s/c=0.91 id=31% cov=101%
MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARladtklTVELTVQGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLH
>UniRef50_A5TX76(1-98:181) Ribosome-associated protein Y n=9 Tax=Fusobacterium RepID=A5TX76_FUSNP  E=7e-18 s/c=0.93 id=31% cov=100%
MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKlktgNAHVTEILAYLSGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSR-
>UniRef50_A9NEZ2(1-98:185) Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ2_ACHLI  E=2e-17 s/c=0.92 id=35% cov=101%
MRYEIIGKNgFVATDAIKAYVVKKLDKIVNMFDvrVIDTVRVVLRVYKEYSKVEVTIPAPYIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHH
>UniRef50_C4K0H4(1-99:192) Ribosome-associated factor Y n=13 Tax=Rickettsia RepID=C4K0H4_RICPU  E=3e-17 s/c=0.91 id=24% cov=101%
MIISVSGQHISIGNNLQEYSKERATQvVKKYFTDIINIDIHFSKEGINFKCDIIVKYgsgKHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNH
>UniRef50_C6QEK7(1-97:198) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEK7_9RHIZ  E=7e-17 s/c=0.91 id=26% cov=101%
MTIQITGKNLDAGNAFQAYASDKIHTvLNKYLDRVPDGHVRLERERGFFKTSCSVRLtSGLLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNH
>UniRef50_D1N462(1-96:114) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N462_9BACT  E=1e-16 s/c=0.91 id=25% cov=101%
MKISVTGRQFEITPSIREYVESRIQALvEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYHVVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSH
>UniRef50_A6FEI0(1-96:128) Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp. PE36 RepID=A6FEI0_9GAMM  E=1e-16 s/c=0.91 id=33% cov=101%
MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNvKKLEASIHLPQGQLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH
>UniRef50_D0XRD3(19-116:237) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XRD3_9CAUL  E=1e-16 s/c=0.89 id=25% cov=101%
MQVQVSGKHVDVGEALGSRISQELqEGVGKYFERGGEnAEVVVSKDGYGFKVDCWVRLAsGQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDH
>UniRef50_P17265(1-97:190) Probable sigma(54) modulation protein n=55 Tax=Rhizobiales RepID=RP5M_RHIME  E=1e-16 s/c=0.90 id=23% cov=101%
MSVRVSGKHMEIGDSFRVRIGEQIEQaVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDtGVVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH
>UniRef50_D2LB60(1-97:199) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LB60_RHOVA  E=1e-16 s/c=0.90 id=24% cov=101%
MTIKVTGKNIDLGESLREYALNRVEsALDKYSGRSVSGQISVEKNTDGFFSHCAIHLEsGLDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH
>UniRef50_C7QBC3(1-102:237) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QBC3_CATAD  E=1e-16 s/c=0.86 id=32% cov=101%
MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRqseqkdRIELTLDCPrSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIH
>UniRef50_P19954(76-178:302) 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons RepID=RR30_SPIOL  E=2e-16 s/c=0.84 id=27% cov=100%
-KLILQGRNLEVSDNVRSHVEDKVGKsVAKHSHLVREVDVRLSARGGDlskgpklRRCEVTLFTKrHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDH
>UniRef50_Q21ND3(1-97:118) SSU ribosomal protein S30P / sigma 54 modulation protein n=2 Tax=Alteromonadales RepID=Q21ND3_SACD2  E=2e-16 s/c=0.90 id=33% cov=101%
MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGATLAVQSSKTDLYAAIGDSVRKLESALSHRKgiTKANLH
>UniRef50_C4LBF7(1-97:110) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT  E=2e-16 s/c=0.90 id=31% cov=101%
MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGKLFAEAEHEDLHAAINALEQKLERQIIRHIHRpdARRH
>UniRef50_Q6MPK4(1-95:116) Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPK4_BDEBA  E=5e-16 s/c=0.90 id=23% cov=101%
MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKYFKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDH
>UniRef50_Q6AGI3(1-102:232) Sigma-54 modulation protein n=4 Tax=Actinobacteria (class) RepID=Q6AGI3_LEIXX  E=5e-16 s/c=0.84 id=28% cov=101%
MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRhneklgtQNGDDRVELTLVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVH
>UniRef50_C9RQK5(1-96:105) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK5_FIBSS  E=7e-16 s/c=0.89 id=23% cov=101%
MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEvEHQRHCEISVNITGSVIVASADEENMGKAVDVTLERIKVQLKKANDKQNDH
>UniRef50_P33987(1-99:113) Probable sigma(54) modulation protein n=18 Tax=Acinetobacter RepID=RP5M_ACIGB  E=1e-15 s/c=0.85 id=37% cov=95%
MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQldkrskkgsaNHIAEAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR------
>UniRef50_Q1VZQ7(1-100:100) Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZQ7_9FLAO  E=1e-15 s/c=0.84 id=33% cov=101%
MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTEntsspKTGMICEIKLSAPGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH
>UniRef50_Q2JEZ4(1-101:267) SSU ribosomal protein S30P / sigma 54 modulation protein n=4 Tax=Actinomycetales RepID=Q2JEZ4_FRASC  E=2e-15 s/c=0.83 id=33% cov=101%
MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRlsdvcdRVELTVYSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRH
>UniRef50_C5CEL9(1-95:178) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT  E=2e-15 s/c=0.88 id=21% cov=99%
MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIdeDHFTSMDVRVMKERGLYKVEITGHLPGFVVRVEERGDDFYGVVEAIANTLERRIKRYKERAR--
>UniRef50_A8IJQ7(1-98:198) Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IJQ7_AZOC5  E=2e-15 s/c=0.85 id=27% cov=101%
MALRVSGKNMDVGEALRQRFSDRVSEvVGKYFDGGWSGHATVCREGSGYRSELLLHLDsGTNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKgRH
>UniRef50_C7NFI2(1-101:245) Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFI2_KYTSD  E=2e-15 s/c=0.82 id=24% cov=101%
MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRrsedaeRIEITCHDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVH
>UniRef50_Q5U9F8(62-170:172) RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA   E=4e-15 s/c=0.76 id=34% cov=101%
MNraLQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVeephrhKQHGRHFHVRVDVSVPGRNIVASRDpqartgHEDAYQAVTEAFDAARRQLQHYADALNTH
>UniRef50_C9LEJ2(1-97:114) Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ2_9BACT  E=6e-15 s/c=0.84 id=29% cov=99%
MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKpetaNNKSTVLNINVPGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQR--
>UniRef50_Q1PXY8(3-97:119) Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXY8_9BACT  E=7e-15 s/c=0.86 id=34% cov=99%
-NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDsSHLVEMVVNVsRGPTIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIES-
>UniRef50_B9XGM0(1-102:117) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=bacterium Ellin514 RepID=B9XGM0_9BACT  E=7e-15 s/c=0.80 id=29% cov=101%
MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDstkavNRQFKCSMRLAVPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRqsKHKARKH
>UniRef50_B0T677(1-97:210) Sigma 54 modulation protein/ribosomal protein S30EA n=5 Tax=Alphaproteobacteria RepID=B0T677_CAUSK  E=1e-14 s/c=0.83 id=30% cov=101%
MQVQISGKHVDVGEALRARVSDEITlSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLAsGQQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSH
>UniRef50_Q2BGD6(1-91:112) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM  E=1e-14 s/c=0.89 id=33% cov=97%
MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKDIFAKASADNLYAALDSLADKIDRQLDKIHQK----
>UniRef50_A8PQ11(1-97:111) Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli RepID=A8PQ11_9COXI  E=2e-14 s/c=0.83 id=35% cov=101%
MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNEFYARAKNENLYTAIDELIDKIEQQINKHklKSKEKRH
>UniRef50_C6V4K5(1-96:186) Ribosomal subunit interface protein n=2 Tax=Neorickettsia RepID=C6V4K5_NEORI  E=2e-14 s/c=0.84 id=25% cov=101%
MKVTVSGHGFDLGSSLSEYITDRiLFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPISLIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEH
>UniRef50_C1Z9P6(1-96:114) Sigma 54 modulation protein; SSU ribosomal protein S30P n=2 Tax=Planctomyces RepID=C1Z9P6_PLALI  E=3e-14 s/c=0.83 id=24% cov=101%
MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHkHDFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDH
>UniRef50_B7RH54(6-106:192) Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RH54_9RHOB  E=1e-13 s/c=0.77 id=24% cov=96%
---EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKgteyiIDISLQMPGSTLHIdrhpgdDHAHTDIYVAIRDAFNAMERQLRRWQDQHK--
>UniRef50_A0M1S9(1-99:99) Sigma-54 modulation protein-like ribosome-associated protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M1S9_GRAFK  E=3e-13 s/c=0.77 id=27% cov=101%
METIFEFVNIDKSENLEAFTQKKLNKLETKYDWIVRANIFFKRDenkkPNGYITEVRLSAPGPEIFAQSDENSFEASIAETTRDLDRQCEKRKAKMSTH
>UniRef50_A7I0V2(1-100:180) Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC  E=5e-13 s/c=0.75 id=27% cov=101%
MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADerngKKGFIVDFLINLaKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTH
>UniRef50_Q30TJ3(1-100:180) SSU ribosomal protein S30P / sigma 54 modulation protein n=3 Tax=Campylobacterales RepID=Q30TJ3_SULDN  E=2e-12 s/c=0.74 id=26% cov=101%
MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIastqTKKGKDHSVVEFVINLAHKNsIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGH
>UniRef50_B0TQE4(1-96:122) Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH  E=1e-11 s/c=0.74 id=25% cov=101%
MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEpGHLFIVEIATKSDLGKIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAH
>UniRef50_Q0BUA9(35-131:236) Ribosome-associated factor Y n=11 Tax=Acetobacteraceae RepID=Q0BUA9_GRABC  E=3e-11 s/c=0.72 id=22% cov=101%
MHITVSGKQIDLSDALQERVASQLDTISRkYFDQALEAQVTFSRLRSFFICDINLHAgRGLILRGEGEAADANGAFDDAAEHIAKRLRRYRRRMNAH
>UniRef50_A4SAX9(3-101:132) Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SAX9_OSTLU  E=5e-11 s/c=0.69 id=32% cov=95%
----VQGLHLEITPAIDEYCRAKIGKACSHVDprEIREVDVRCsarggedSRGGHEHKTEVTVLMtRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHS--
>UniRef50_A3XP15(20-119:120) Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XP15_9FLAO  E=6e-11 s/c=0.69 id=26% cov=101%
MNYNFEYHDVAASAALEDFTKEQLDKLVNKYDFIVRADVFFKTENtssdeTGKIAGIRLSAPGPRLFADHSSKSFHESVKEATRELNIQLKKRKDKMKSH
>UniRef50_Q30TL0(1-96:109) Sigma 54 modulation protein / SSU ribosomal protein S30P n=2 Tax=Campylobacterales RepID=Q30TL0_SULDN  E=1e-10 s/c=0.71 id=22% cov=101%
MNVQVHAKDITLSANAKGHIETAIAAFKKYSLDITTVNVNLKKEKKGVLVEFDIHIAHSEpVVINQADEDLDTAIDLAIDRASKALRRLHDRVVSH
>UniRef50_Q7UMU4(1-97:113) Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula baltica RepID=Q7UMU4_RHOBA  E=2e-10 s/c=0.69 id=28% cov=101%
MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKpHVEFRISVEHSdDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEH
>UniRef50_B3QW75(12-105:109) Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW75_CHLT3  E=2e-10 s/c=0.71 id=19% cov=96%
-NVQFTLRHSSNHRDIEAYAKDAIKAFHKYYTDILDCHIILDHQKNdkeqNKIAEIKAHVPSHTFVSKEQGPTYEVAIDTCVSNICKQLKKHRDK----
>UniRef50_C7RTG4(1-102:128) Putative sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RTG4_9PROT  E=3e-10 s/c=0.65 id=22% cov=101%
MQIVIQARGFDLSAGLREHVERRLHfALDWAQYHVSRIVVSLSdingpRGGEDKRCQIRVAMAGaPEVAIDDIESDLYLAIDRAVDRVGRTLSRRLARQREH
>UniRef50_C7M130(1-102:182) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M130_ACIFD  E=4e-10 s/c=0.65 id=23% cov=101%
MAVDLRCRGCTLTEQQRAHVEDRIARLEKYLGAPERVEVHVERAGNpanpdRVVTEVTYVVSKAVVRARGVGETELESFDRAEERLKRRLERLKGRLvaRSH
>UniRef50_A6VX39(3-97:130) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Marinomonas RepID=A6VX39_MARMS  E=5e-10 s/c=0.69 id=33% cov=97%
-TLNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHeliVEASVHIPGHDLFAMVQTEkQLKPALDMLVGKLEKQLIKHKAKH---
>UniRef50_B8HME4(1-116:207) Cold-shock DNA-binding domain protein n=8 Tax=Cyanobacteria RepID=B8HME4_CYAP4  E=7e-10 s/c=0.56 id=24% cov=101%
MKVppEITYRDVPKNAAIESLVQEKITKLERVCDHISSCHIAIEKihdrprRGSPYRVRLDITVpPSHELVAESNpgEENQYveldTVIRDAFQKAERQLRelsrqqRQSDRIASH
>UniRef50_A6DIV0(1-95:115) Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIV0_9BACT  E=1e-09 s/c=0.68 id=15% cov=101%
MEIIVASRHFKVQKDVKTQIVEEMKKFDTCASKLTTAEVILNNIHHNIHVEIIIRGKHLNCKSEAETDDLLKSFYLAFKKMRNQLDKRRTKVKNH
>UniRef50_D1AUL6(1-100:197) Putative ribosome-associated inhibitor A n=1 Tax=Anaplasma centrale str. Israel RepID=D1AUL6_ANACI  E=2e-09 s/c=0.63 id=22% cov=101%
MNIIIACRGYKATASIKSYVENSiISHVGKYLRDspEINARVVMAKEAHMLTACVSICEDHHEFVkASKSADTVYKAVDDAVAHIASKLRKYKgEKIDRH
>UniRef50_B4WI97(1-110:142) Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WI97_9SYNE  E=3e-09 s/c=0.57 id=24% cov=101%
MRVppEISYRGVNKTEALETLVAEKIAKLEKFYREISSCHLAIEKvhdhpnSGSPYRVRLDITVPEDREVVVDKSPDkgvqyqpLEAIIRDTFDIANRQLKELNEQQHNH
>UniRef50_UPI00016C56FB(1-99:112) hypothetical protein GobsU_19047 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56FB  E=3e-08 s/c=0.60 id=18% cov=101%
MQVTVSVRHGQLGDDIQQQLKEKGEKLLHFFSRLTMIEITVDLHRthdGNMSVEVRATAEHkHEFVGSDHAEDVLAAFNKAAAHVKQQVTHYKEKIQDH
>UniRef50_D2QHG3(11-101:113) Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHG3_9SPHI  E=8e-08 s/c=0.64 id=24% cov=92%
-RLSINAVNITVDDAFRDRIAQALVKLRRYYsGDLITAEVFLRVEahggPNDKSLRIVYGVPGTGAFAEEEGDNWDTMLHTVTGKLKHQLER--------
>UniRef50_B2IF06(1-114:187) Cold-shock DNA-binding domain protein n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IF06_BEII9  E=1e-07 s/c=0.51 id=27% cov=101%
MEVqaQIDFQGFHPTEQQRALIEQKIAGLEEFYDRITACRVVMKAPSHHHRTggqyEVNIHLvlpEGREVVVErtppedERFSDPMFAINDAFSRARRRLqdevRHIRGQVKVH
>UniRef50_Q11EM9(1-108:194) Cold-shock protein, DNA-binding n=1 Tax=Chelativorans sp. BNC1 RepID=Q11EM9_MESSB  E=2e-07 s/c=0.53 id=23% cov=96%
MQVplQIAFHKAEKSDWAEQEIRARVDKLQTYHDRIIGCRVTVDQRARNVegtlppVVRIEISLPGtaPVIVAYEpdrlqqkyQSPDLGNAINDAFNLAERRLAQIKE-----
>UniRef50_A8V5D5(8-73:158) Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V5D5_9AQUI  E=3e-07 s/c=0.86 id=36% cov=62%
----------------------------------VNVRVTYDFEKHRHRNRVDIDIyfntpGGGVIHAWEESNDLYTAIDFVVDEVERQLVRLKARR---
>UniRef50_A4VJU5(1-104:104) Ribosomal subunit interface protein, putative n=5 Tax=Pseudomonas RepID=A4VJU5_PSEU5  E=4e-07 s/c=0.54 id=28% cov=101%
MQVLVNSNHsISVTADLEERIKATVEtELDRFDDHLTRVEVHLNDENsnksgpHDKRCQMEARVKGHDpISATHKAETLDLAINGAAEKLNHALSHALDKLNRH
>UniRef50_C3RQU3(44-133:163) Predicted protein n=1 Tax=Mollicutes bacterium D7 RepID=C3RQU3_9MOLU  E=4e-07 s/c=0.62 id=26% cov=94%
MDISIRCK-ITMTEAMNEYLMNRFKKLNRY-KVLDNSRVSILVKPHEAAVKIQtlISNKYGNFKVTTMASDYYTAVDLHIDKVKNKLCKIKE-----
>UniRef50_A5FK95(1-104:104) Putative uncharacterized protein n=2 Tax=Flavobacteriales RepID=A5FK95_FLAJ1  E=3e-06 s/c=0.51 id=23% cov=101%
MKIQInTDKNIEGHQRLEKYFSEELEKgLARFEDKITRIEVHFGDENgekfslNDKKCVLEVRTAKlQPITVTEHAETLEKAFNGALSKIKKSLTTTFEKLKAH
>UniRef50_C5CAR2(3-89:225) Ribosomal subunit interface protein n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAR2_MICLC  E=3e-06 s/c=0.61 id=18% cov=86%
MDVSYIARNISLSESFRDHVVERTERLQRLAEGADTLEVRVTKVSHRKhsdeavRVELTVRGPRDVVRAEAAADDELAAFDKAAARL--------------
>UniRef50_Q73N60(1-93:96) Ribosomal subunit interface protein, putative n=2 Tax=Treponema RepID=Q73N60_TREDE  E=3e-06 s/c=0.57 id=25% cov=98%
MNINIQAVKFTMDEDQKKYLDQKFKRIEYADNLITDIQCFIKLDK-KFIYDTTINFRwGGTAHVSTENYEFEAGVNKMMDIADQKVKKEKDKVQ--
>UniRef50_A4XWR8(30-131:133) Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina ymp RepID=A4XWR8_PSEMY  E=3e-06 s/c=0.52 id=23% cov=86%
MQVMVNSdNHIHGSAALEDRVRGRVtDKLKRFEDHLTRIEVHFNDEnshksgGQDKRCQLEARLKGRDpVSVSHNADQLEQALEGAIDKL--------------
>UniRef50_D0SNV4(1-104:124) Ribosomal subunit interface protein n=4 Tax=Acinetobacter RepID=D0SNV4_ACIJU  E=1e-05 s/c=0.49 id=26% cov=101%
MNIEIrTDKNIQGSERLISYVRAELtQEFQRYSERITHFSVHISDENgektgdHDKRCMIEARPAGMKpLAVTHKAANIDASIHGAIDKLKRSLEHLYEKKEHH
>UniRef50_B2UIV4(5-103:105) Ribosomal subunit interface protein n=2 Tax=Ralstonia pickettii RepID=B2UIV4_RALPJ  E=3e-05 s/c=0.50 id=15% cov=98%
--VDISFQGIPHSKAVEEAVIKHADRLKRIRADLMRCRVSLavgakhQHQGKPFDVNVHVFTPHQThISSNTSNEDPYVALHEAFSHVERMLLEAGSKRSS-
>UniRef50_Q21YM4(1-92:114) Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21YM4_RHOFD  E=0.0006 s/c=0.49 id=25% cov=88%
MQIQInTDHHIEGHEALAAWATGEVkSGLSRFSASVTRVEVHLSDENGHksgpddKRCVMEARVQGRQpLAVTHNAPSLYLTVTGATEKLSR------------
>UniRef50_Q9RVE7(1-97:191) Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA   E=6e-24 s/c=1.14 id=42% cov=97%
MQIyQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRdvrnnERRNRVEVQLNVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTR----
>UniRef50_Q0ADR1(1-91:111) Sigma 54 modulation protein / SSU ribosomal protein S30P n=6 Tax=Proteobacteria RepID=Q0ADR1_NITEC  E=4e-23 s/c=1.20 id=49% cov=97%
MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGREIFVEADSTDMYASIDSLADKLARQILKHKEK----
>UniRef50_C1SGY6(1-85:177) SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGY6_9BACT  E=2e-22 s/c=1.25 id=36% cov=91%
MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVFMKGLEKSEDLYASIDLAVDKIEKQL----------
>UniRef50_A4FNI8(1-101:231) S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FNI8_SACEN  E=5e-21 s/c=1.00 id=31% cov=101%
MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPrqaktcQRVEITLKGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH
>UniRef50_A2C0K6(1-100:194) Light repressed protein A-like protein n=5 Tax=Prochlorococcus marinus RepID=A2C0K6_PROM1  E=3e-20 s/c=0.99 id=35% cov=101%
MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEmVQEADVHLSVARNPrvpqQTAEVTVFANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH
>UniRef50_Q122P6(1-100:109) Sigma 54 modulation protein / SSU ribosomal protein S30P n=8 Tax=Proteobacteria RepID=Q122P6_POLSJ  E=3e-20 s/c=0.99 id=39% cov=101%
MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNmkekeRRQRAECNVHVKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDH
>UniRef50_A7BEC8(1-101:214) Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEC8_9ACTO  E=6e-20 s/c=0.98 id=32% cov=101%
MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRqadtaeRIELTVYGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDH
>UniRef50_Q4L4H7(3-98:192) Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ   E=1e-19 s/c=1.01 id=31% cov=99%
-RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVktyQNSTTKIEVTIPLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNR-
>UniRef50_Q2LSN2(31-123:209) Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSN2_SYNAS  E=8e-19 s/c=1.02 id=33% cov=99%
MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLNLIGKEESKDMHLAIDNAVEKIERQLKKHKEKIR--
>UniRef50_A9BRS9(1-98:119) Sigma 54 modulation protein/ribosomal protein S30EA n=21 Tax=Betaproteobacteria RepID=A9BRS9_DELAS  E=2e-18 s/c=0.95 id=35% cov=97%
MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNqkekeKRQRAGCTLRVKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTR----
>UniRef50_UPI0001BCF930(36-126:129) sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF930  E=3e-18 s/c=1.02 id=33% cov=97%
MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGRLIKLKEK----
>UniRef50_Q49VV1(3-94:190) Uncharacterized protein SSP1964 n=127 Tax=Firmicutes RepID=Y1964_STAS1  E=6e-18 s/c=1.00 id=31% cov=95%
-RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVktyQNSATKIEVTIPLKKVTLRAEERNDDLYAGIDLINNKLERQVRKYKT-----
>UniRef50_B4D5R5(10-104:191) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Verrucomicrobia RepID=B4D5R5_9BACT  E=2e-17 s/c=0.95 id=38% cov=99%
--VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHcTNHITIEASHETDDMYASIDGVAAKIAQQMRKYKTKiLRNH
>UniRef50_A3QBU6(2-90:124) Sigma 54 modulation protein / SSU ribosomal protein S30P n=21 Tax=Shewanella RepID=A3QBU6_SHELP  E=6e-17 s/c=0.99 id=27% cov=95%
--IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLFAQAKDKDLYAAINAMGQKLEKQLNRLSHK----
>UniRef50_C7MXY7(1-88:226) SSU ribosomal protein S30P/sigma 54 modulation protein n=29 Tax=Actinomycetales RepID=C7MXY7_SACVD  E=1e-16 s/c=1.00 id=34% cov=87%
MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPrqaktcQRVEITGKGKGPVVRAEARAGDFYTALDSAIRKLE-------------
>UniRef50_A1SVN1(1-93:122) SSU ribosomal protein S30P / sigma 54 modulation protein n=33 Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN  E=1e-16 s/c=0.94 id=28% cov=99%
MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTSIAAKGNDYVMYPAIASAAKKLETVLKHRKGQLK--
>UniRef50_A9TA00(89-191:297) Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TA00_PHYPA  E=1e-16 s/c=0.85 id=30% cov=96%
-RLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVkEVDVRMSVRGGEtgrgerlQRCEVTLFTkKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEK----
>UniRef50_B0MPR7(38-132:211) Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MPR7_9FIRM  E=2e-16 s/c=0.91 id=27% cov=100%
MTVNITAKKIQVTQAFSDYATKKIEaKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGLIFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEK-
>UniRef50_A7NNI5(6-103:198) Sigma 54 modulation protein/ribosomal protein S30EA n=6 Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS  E=2e-16 s/c=0.89 id=31% cov=98%
MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVehmeeMRRNEGNVHRVQVTVVGDHGVLvRAERRAPELYAAIDEVYDTLQRQIERYKDKH---
>UniRef50_Q07UJ4(1-96:196) Sigma 54 modulation protein / SSU ribosomal protein S30P n=5 Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5  E=2e-16 s/c=0.90 id=26% cov=100%
MTIRVSGKSISVGDALRARVNERTDEvLRKYFDGQYSGHITLSKDGFGFRTDCALHLDsGITLEAESNAADAYASADQALLQIEKRLRRYKSKLKD-
>UniRef50_D1BCP0(1-100:220) Ribosomal subunit interface protein n=2 Tax=Actinomycetales RepID=D1BCP0_SANKS  E=2e-16 s/c=0.87 id=25% cov=100%
MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRqsgireRVELTVRDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKN-
>UniRef50_A7VXE1(1-95:183) Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VXE1_9CLOT  E=4e-16 s/c=0.90 id=28% cov=100%
MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRtADGMVYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEK-
>UniRef50_C8NLT0(25-122:234) S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF   E=5e-16 s/c=0.87 id=32% cov=98%
-QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADesnriqITATGKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRS--
>UniRef50_Q3SIX5(1-103:189) Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Betaproteobacteria RepID=Q3SIX5_THIDA  E=5e-16 s/c=0.83 id=32% cov=100%
MKtpLQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLevphqhKHQGKVFKLRIDIGVPGSEIVVNrDAHEDVYVALRDAFDAARRQLDDYSRRLRR-
>UniRef50_D2EW39(1-98:99) Ribosomal subunit interface protein n=4 Tax=Bacteroides RepID=D2EW39_9BACE  E=6e-16 s/c=0.87 id=33% cov=100%
MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKpetaENKEAGVKVLVPNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRS-
>UniRef50_A6NQP5(1-94:181) Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQP5_9BACE  E=8e-16 s/c=0.90 id=27% cov=100%
MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTIIRVAESTSDMFATIDAAVASVERQLRKNKARLEK-
>UniRef50_P30334(1-96:203) Probable sigma(54) modulation protein n=14 Tax=Rhizobiales RepID=RP5M_BRAJA  E=8e-16 s/c=0.88 id=29% cov=100%
MTLRISGKSVSVGEALRGRVSDRTEEvLRKYFDGNYSGHITLSKDGFGFRTDCALHLDsGITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKD-
>UniRef50_A6LE89(1-97:99) Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8   E=1e-15 s/c=0.87 id=35% cov=99%
MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPetvkNKQASIMLSVKNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIR--
>UniRef50_A7HPI1(1-84:193) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPI1_PARL1  E=3e-15 s/c=0.98 id=24% cov=87%
MQVQVSGHHLDVGDALRTHATERLEaAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLsSGLRVNAQGTANEVYASFEAALERLE-------------
>UniRef50_C1F1L9(1-92:225) Ribosomal subunit interface protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L9_ACIC5  E=4e-15 s/c=0.90 id=25% cov=98%
MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANKLVSTAESTSMETAVRMALEKAETQAKRFKQKM---
>UniRef50_C6II14(25-122:123) Sigma-54 modulation protein n=16 Tax=Bacteroidales RepID=C6II14_9BACE  E=9e-15 s/c=0.83 id=31% cov=100%
MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKpeaaENKEAGIKILIPNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRS-
>UniRef50_C8W7H2(3-104:196) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD  E=1e-14 s/c=0.79 id=39% cov=100%
-DIKISGRKVSISEALRAHVDQKIGDALKVFDiTPMSCDVVLRVDKNpsnpdRKTTEVTVFVRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVveRRH
>UniRef50_B3DYI7(1-101:115) Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYI7_METI4  E=2e-14 s/c=0.79 id=36% cov=100%
MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEpakadisHQAFAIKARLYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTD-
>UniRef50_B9L9D3(1-96:166) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Nautiliaceae RepID=B9L9D3_NAUPA  E=3e-14 s/c=0.83 id=29% cov=100%
MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDfFTVEIIMNIPdKGTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITD-
>UniRef50_Q3B2F4(35-129:130) Putative uncharacterized protein n=3 Tax=Chlorobiaceae RepID=Q3B2F4_PELLD  E=3e-14 s/c=0.84 id=26% cov=97%
-TIKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEknknAEITLHVPQHDFIAKESGTAYELCIDACVDALGRQLQKYKEKM---
>UniRef50_C6W7I9(1-100:125) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD  E=3e-14 s/c=0.79 id=31% cov=100%
MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKlhtkllEVKLYVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNN-
>UniRef50_Q01PW5(1-97:181) SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PW5_SOLUE  E=5e-14 s/c=0.81 id=31% cov=100%
MKITYTGRQVELKPAQAKKLEARFAKIGRLLDggkRECEVHVILSLERHLHKAEATINYYNHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFRD-
>UniRef50_A2PYC3(1-69:78) Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PYC3_VIBCH  E=5e-14 s/c=1.14 id=48% cov=73%
MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAEIHAHADDE---------------------------
>UniRef50_A8F3K5(1-98:177) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT  E=7e-14 s/c=0.80 id=21% cov=101%
MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLkeNDIVSAEIRAEKDAINYVLKANINFKGNIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVReRH
>UniRef50_B9CNR8(3-104:195) Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN   E=9e-14 s/c=0.77 id=34% cov=100%
-DIKISGRKVTVSDALRSHVEEKIGDALKVFDiQPMTCDVVLRVDKNpsnleRKSVEVTVFVRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIvdKHH
>UniRef50_B4U9J0(1-110:200) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Aquificaceae RepID=B4U9J0_HYDS0  E=9e-13 s/c=0.68 id=34% cov=98%
MQIEFIGKHFEITEHLRAFVESKLSKFKRLLretgEDQTEIVVTISSARAKHtddninktsiyRVDIDIYIKsngGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKERR---
>UniRef50_Q1IR29(1-94:198) SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR29_ACIBL  E=2e-12 s/c=0.79 id=24% cov=100%
MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQDLVGLGESTDMRTAIGEALEHIEKQALKHNNRRRN-
>UniRef50_C3XP50(1-107:186) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Campylobacterales RepID=C3XP50_9HELI  E=4e-11 s/c=0.65 id=27% cov=100%
MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQekkgskkgekkkKRTFGIDITLSLAHsNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNK-
>UniRef50_B3CQ21(1-101:116) Probable sigma(54) modulation protein n=2 Tax=Orientia tsutsugamushi RepID=B3CQ21_ORITI  E=1e-09 s/c=0.63 id=24% cov=100%
MNIIISGspQYNSVKFNLNQYVNRKIINVAnKYFDNLKAPNVHFSKeEHNQFKCHIVVNPitkQHRIINSTGYSNDVFASFDLARVKLEQQLRRYKSKLKD-
>UniRef50_D2MK58(1-98:110) Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK58_9BACT  E=5e-08 s/c=0.60 id=18% cov=97%
MDLKIDSRNVGMTPRWKQEIQDRVTTLQTEYDNITHARITLTKNPHHKKgdnnAEALIVLnlpPRHTVTARKEAKSFEEAIRSAFKAAMTEVKKFREK----
>UniRef50_D0MIH4(8-103:109) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIH4_RHOM4  E=1e-07 s/c=0.60 id=18% cov=97%
--FEYYSENHELTDALKAKVEQRIQKLAKKHHDITGVSVAIqrvehTHTPHAYRARVVVYHKPENVVATEVAPTVEESLLRALDSVERQVREQRRKLR--
>UniRef50_A1WVP9(1-106:115) Ribosomal subunit interface protein, putative n=2 Tax=Ectothiorhodospiraceae RepID=A1WVP9_HALHL  E=3e-07 s/c=0.53 id=26% cov=100%
MQIQINpGAGVHISDALEESIREALGAVDRRFgEQLTRIEVHFQdingpKGGVNKHCRIEARPRGLDpVLAENTADDAYDAARGAAKKLERvldgRLGKLADKQRK-
>UniRef50_A6CY25(1-93:105) Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CY25_9VIBR  E=3e-07 s/c=0.60 id=21% cov=97%
--MQITSMHVDITPSMKTLIEEKFAHIQGHFHSIDqeKCHIIYHESYRLFEVEFTVHLDHEQFFTKKSNATFAIALQEATQAVLHSLEKHKTKLS--
>UniRef50_A4VGA6(1-100:140) Ribosomal subunit interface protein, putative n=2 Tax=Pseudomonas RepID=A4VGA6_PSEU5  E=5e-06 s/c=0.52 id=21% cov=86%
MHVQVNSNHIPGSVELHEWVGTTVEdRLERFDDFLTRVEVHISDENaqkagaDDKRCQIEARPKGHQAVsVTHKAESLQLAVDGAADKM--------------
>UniRef50_Q6APA9(1-99:176) Similar to cold-shock protein n=2 Tax=Desulfobulbaceae RepID=Q6APA9_DESPS  E=1e-05 s/c=0.51 id=19% cov=100%
MELKVETRNVDLRKSWQEKIDTESEKLIRHYANfILHLRVAIEanthHKEGGYEVRLVASVPQDTVVVTRSGEVVRAVLTEAFDVLALQLKEIQRKKRK-
>UniRef50_B9TBM2(3-40:58) Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TBM2_RICCO  E=8e-05 s/c=1.27 id=49% cov=41%
---------------------------------------------------------GKTVYVESLSQDLYAAIDTLIDKLDRQVMKYKAKVQGH
>UniRef50_Q4UZM5(8-109:120) Putative uncharacterized protein n=8 Tax=Xanthomonas RepID=Q4UZM5_XANC8  E=0.0001 s/c=0.47 id=29% cov=86%
MQIQIqTDNHVPHDPSVVQHVEKTCSaQLAHFAHDITRVEVHLRDENGqrggaaDRTCSIEAHVAGlPPIAASNSAETTASAVTGAARKL--------------
>UniRef50_B8CYM6(1-95:184) Sigma 54 modulation protein/ribosomal protein S30EA n=134 Tax=Bacteria RepID=B8CYM6_HALOH  E=5e-23 s/c=1.14 id=38% cov=100%
MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDgEPQEAHISMEVEKGRHIVEVTAYLNGLILRGEEESQDMYASIDGVLEKLERQVHKYKTKINR-
>UniRef50_Q71WR7(3-98:187) Ribosomal subunit interface protein n=44 Tax=Bacilli RepID=Q71WR7_LISMF  E=5e-22 s/c=1.09 id=38% cov=99%
-KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPdaNVHVNLKVYSDKNaKVEVTIPLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNR-
>UniRef50_C9XLM7(1-95:187) Putative sigma 54 modulation protein n=8 Tax=Clostridium RepID=C9XLM7_CLODC  E=7e-22 s/c=1.09 id=35% cov=100%
MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTiIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKD-
>UniRef50_B5YI17(1-94:173) SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI17_THEYD  E=2e-21 s/c=1.10 id=33% cov=100%
MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHLIQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQN-
>UniRef50_C0WCZ2(1-92:180) Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCZ2_9FIRM  E=5e-21 s/c=1.11 id=29% cov=98%
MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIVLRAQEGSENMYASIDNCVEKIERQIHKYKTRL---
>UniRef50_C8WT44(1-96:180) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD  E=1e-20 s/c=1.04 id=39% cov=100%
MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADkqIYVTMAVEGLDHRVEMTVFVNGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNR-
>UniRef50_C6M3U2(1-91:104) Ribosomal subunit interface protein n=6 Tax=Neisseriaceae RepID=C6M3U2_NEISI  E=2e-19 s/c=1.06 id=41% cov=97%
MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKDLHVEAVEQDMYAAIDVLMDKLDRAVLKHKEK----
>UniRef50_P71346(1-91:107) Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria RepID=RAIA_HAEIN  E=2e-19 s/c=1.06 id=35% cov=97%
MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGNLLASATSDDMYKAINEVEEKLERQLNKLQHK----
>UniRef50_C8P3U4(1-96:180) Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae RepID=C8P3U4_ERYRH  E=4e-19 s/c=1.00 id=36% cov=100%
MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFevDDSWRANVVVNVYPQGSKVEVTITSKIGPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISR-
>UniRef50_A5EVC1(1-94:96) Sigma-54 modulation protein/S30EA ribosomal family protein n=2 Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV  E=4e-19 s/c=1.02 id=40% cov=99%
MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIaASNDIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLE--
>UniRef50_A9G806(1-90:122) Probable sigma(54) modulation protein/sigma(54) modulation protein family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G806_SORC5  E=3e-17 s/c=0.99 id=36% cov=92%
MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLAFHATERGEDMYASIDMVHDKLERQIR---------
>UniRef50_C1EFG3(81-181:284) Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO   E=5e-17 s/c=0.88 id=32% cov=96%
-KVIVQGRHLEITDSIREYAEEKINKAVAHFDqhDVREVDVRCSSRGGAdkktpggalQKTEVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEK----
>UniRef50_B8LMC5(89-191:321) Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LMC5_PICSI  E=1e-16 s/c=0.85 id=27% cov=96%
-RLIIQGKNFQLTDAVKAYIEEKVGiAVQKHANLVREVDVRLSIRGGEvgkgpkiRRCEVTLFTkKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEK----
>UniRef50_B2UQU2(10-100:197) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQU2_AKKM8  E=3e-15 s/c=0.91 id=44% cov=96%
--ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCsDHITIDASTEGTDMYACIDETITKIMRRMRKHKTRL---
>UniRef50_A6WEN5(1-87:256) Sigma 54 modulation protein/ribosomal protein S30EA n=7 Tax=Actinobacteridae RepID=A6WEN5_KINRD  E=4e-15 s/c=0.95 id=29% cov=86%
MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRqassseRVEITVRDKGPVVRAEACADDPYAALDLATTKL--------------
>UniRef50_C6Y270(1-97:115) Ribosomal subunit interface protein n=7 Tax=Bacteroidetes RepID=C6Y270_PEDHD  E=3e-14 s/c=0.82 id=33% cov=99%
MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENvedeANKISEIKLIVPGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTR--
>UniRef50_B7GE66(13-108:209) Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR   E=4e-14 s/c=0.82 id=34% cov=94%
--VIINGQNIELTPALVEHVNKRIgGQINKLASNgaIQECDVILSVSKNPkvkngHRVEVVTNLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD-----
>UniRef50_B8GU63(9-117:192) Cold-shock protein DNA-binding n=7 Tax=Proteobacteria RepID=B8GU63_THISH  E=6e-14 s/c=0.72 id=31% cov=99%
--VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEaghrhhHKGNLYHVRIDLTVPNGELVASREpsghhaHEDVYVAVRDAFDAMRRQlqdrLRKQRGRVKHH
>UniRef50_A2U255(1-98:100) Sigma 54 modulation protein / S30EA ribosomal protein n=4 Tax=Bacteroidetes RepID=A2U255_9FLAO  E=1e-13 s/c=0.79 id=31% cov=99%
MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTEntssdNTGMICNIRLSVPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMS--
>UniRef50_C6X055(1-94:96) Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae RepID=C6X055_FLAB3  E=2e-13 s/c=0.82 id=29% cov=96%
MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVEnksdKENKTAEIILAVPGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE-----
>UniRef50_C1QAL2(1-91:256) SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR   E=2e-13 s/c=0.85 id=28% cov=97%
MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKVFHDKEKEKDLYVAIDAMFQKIEREIRKSKER----
>UniRef50_A6FSM7(1-107:190) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB  E=2e-13 s/c=0.71 id=29% cov=99%
MQtpLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRqgnlyeVTIELRVPGTELVVHPTKGDVPAhehpqvAIRDAFTAIERQLRAHKQRIS--
>UniRef50_B1ZMG4(12-109:127) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP  E=3e-13 s/c=0.78 id=31% cov=99%
-KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQtmgteHHYTATAQIEIGGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKD-
>UniRef50_Q2VZ29(39-149:158) Putative uncharacterized protein n=2 Tax=Magnetospirillum RepID=Q2VZ29_MAGSA  E=3e-13 s/c=0.69 id=32% cov=99%
MQIplQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVieqhhkntsnLHHKGEPFHIRLALTVPGDELVVkrdpkdSHVNEDIYVALREAFAGMERQLKEYVDRSR--
>UniRef50_Q2S0T2(30-125:132) Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0T2_SALRD  E=3e-13 s/c=0.79 id=29% cov=99%
-QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNspaENKTASINIDVYQKRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRS-
>UniRef50_A0LVS3(1-97:322) Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=Actinomycetales RepID=A0LVS3_ACIC1  E=5e-13 s/c=0.78 id=29% cov=97%
----MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRladsceRVELTCISAGPPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVH
>UniRef50_Q84M68(82-183:309) Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ   E=8e-13 s/c=0.73 id=26% cov=99%
-RLIMQGRNVKLNEKVKEHIEEKAGRaVAKHSQLVKEVDVRLSARGGElsrgpkiCRCEITLFTKrHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD-
>UniRef50_A6LJQ7(1-93:176) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Thermotogaceae RepID=A6LJQ7_THEM4  E=1e-12 s/c=0.80 id=22% cov=99%
MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKDLVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVR--
>UniRef50_B5D3P6(15-111:113) Putative uncharacterized protein n=3 Tax=Bacteroides RepID=B5D3P6_9BACE  E=2e-12 s/c=0.76 id=29% cov=99%
MEVRIQSIHFDASDKLEAFIQKKAEKLEKFCDNIMKVEVSLKVVKPetamNKEAGVRVLALNSEFYAEKISDTFEESIDVCMEALSKQLLKAKEKLQ--
>UniRef50_A1SY46(5-113:189) Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms RepID=A1SY46_PSYIN  E=2e-12 s/c=0.67 id=28% cov=99%
--LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHqqgklfRVSIDLTLPDGELLVnrsapeHHAHEDAYVAIRDAFKSIRRQmqdfVRKQRGKVKTH
>UniRef50_A6Q4Q4(4-101:180) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB  E=2e-12 s/c=0.75 id=24% cov=99%
--LHIYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADerngKKGFTFEFDIHVaKKGNVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNH
>UniRef50_C3CTB3(4-92:181) Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTB3_BACTU  E=3e-12 s/c=0.82 id=33% cov=95%
MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEKRL-TISVSVPFNGELIYAKSKDEDFYVALDSVVDKVKRQITTAKD-----
>UniRef50_B7IG48(1-93:176) Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7IG48_THEAB  E=7e-12 s/c=0.77 id=17% cov=99%
MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKDLVVTETSDDIYNLIDILSDAFEKKLKREREYVR--
>UniRef50_A4AQL9(1-93:99) Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AQL9_9FLAO  E=1e-11 s/c=0.76 id=28% cov=95%
MTIDIQYVQMPTSEAMNELLSAKLDRLATKYDWIIRAQVHFKQENDPtgkgKICEMELSAPGPRIFAQSNEDDFEKAAAKTIKDLEKQLSKRK------
>UniRef50_C1DL86(1-107:189) Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DL86_AZOVD  E=3e-11 s/c=0.65 id=24% cov=99%
MQkpVQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHqgrlyqVKVHLTLPDGDIHSsqahhdEHAHEDPYVAIRDSFRAVRRQLEDYARKRR--
>UniRef50_D2NS77(4-86:213) Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa RepID=D2NS77_9MICC  E=1e-10 s/c=0.82 id=28% cov=84%
-EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHlggeSIRVEITVVGTGPVLRSEAQGHDKFAVFDETYGK---------------
>UniRef50_A5IBA4(5-109:190) Sigma 54 modulation protein YhbH n=4 Tax=Legionella pneumophila RepID=A5IBA4_LEGPC  E=1e-10 s/c=0.64 id=22% cov=99%
--IQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHnkgklyHVRIDLTVPDAELVVSREssnkhaHEDVYVSLRDAFNAIERQLKNYANQRRGH
>UniRef50_Q3Z6I7(1-98:179) Ribosomal subunit interface protein, putative n=5 Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1  E=1e-10 s/c=0.69 id=20% cov=99%
MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRsqadhFILKATLNTGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKME--
>UniRef50_Q11G12(6-109:109) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G12_MESSB  E=7e-10 s/c=0.62 id=24% cov=98%
---KVTFRNMERSDAIEGHVMRRVEEVEKCFDRVIGCDVVIeaaqkrKLSGRAFKVHVALQIPGPDVVVtrlvarSKAAENVNLAIHEAFSAATRRLLARKDQMTGH
>UniRef50_B1Z8J5(9-102:163) Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Methylobacterium RepID=B1Z8J5_METPB  E=4e-09 s/c=0.67 id=20% cov=98%
-NILVQSSNVDLGSVLPDYARAGIMQVAsKYIGNLNIAAVHFNREGGGYRCTVNLQMGAlPMMSGEADHRNAYAAFRRALEKVAKQLRRAKRELR--
>UniRef50_Q2RYB7(1-114:126) Ribosomal subunit interface protein, putative n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB7_RHORT  E=3e-08 s/c=0.52 id=23% cov=99%
MQIpvQIVFRGIDHSDAVEERIREKAAKLEQFHKNITACRVVVEmhhkntshvhKRGEPFLISVQVSVPGEDLNAVSShgkdadlkaHEDVGIALRDAFESMERQLRDIAERKR--
>UniRef50_Q21KB8(7-101:105) Putative sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Gammaproteobacteria RepID=Q21KB8_SACD2  E=3e-08 s/c=0.63 id=20% cov=92%
-------RDLDTSPALNDVIYKKMEKLHRYSDSIIHSKVVLdsphnqKHKGKLYRASIEIGLKGHPLTVSQDAPNVHIAVRDAFAAAERKIKEDNSKRR--
>UniRef50_A5ETX8(15-110:307) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5ETX8_BRASB  E=8e-08 s/c=0.61 id=27% cov=96%
---NIVTRNLHGHPFLREKLYSKIRALEQHLQRFPPDAVHLLIEldrharKEEHRAVLTLRLPSHILHADKSAKSAITALTHAVKALLQELKALKEKMR--
>UniRef50_Q1PZB4(5-108:176) Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZB4_9BACT  E=1e-07 s/c=0.55 id=22% cov=99%
--LEIVARDFDLTEANKADIHKYAEKLDAAYDRIIRCRVVVEALRHRehkglfYNVKVVVTIPGTELVIKRKpNEDFHLAVKDSFNAMRRKLEdfvvQRSGKVKHH
>UniRef50_C5B5J5(1-102:390) Putative uncharacterized protein n=4 Tax=Alphaproteobacteria RepID=C5B5J5_METEA  E=2e-06 s/c=0.53 id=20% cov=99%
MNVIRSFRNLDrhgqqrAPEVIEEEVRQLEPHLARFREDLVRLEVVASqtRGKTRIKVSLRLQLPSGVIAAREDGFEIEPVLRKAFADLRHQVDRHVARLK--
>UniRef50_A7HIK3(1-101:134) Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HIK3_ANADF  E=2e-06 s/c=0.53 id=22% cov=99%
MKLSIHANHLSLPNDVMRFIEKHVTRpLARvYDDSAAELAVHFddsrrKKGGVDQACRLSFRMPGaRTVHVESVEDDLYKALLDASERLKRHVRKQVDKMR--
>UniRef50_Q1NMP5(1-98:118) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NMP5_9DELT  E=3e-06 s/c=0.54 id=17% cov=99%
MELQVEGRNLDIRQSWQDKIESEKARLLRHHAGLVHHlRVSIeetaSHKSGGYEVRLVAAVPGETVVVNRKGESVRTLLGEAFDNLGLQLKELQRKRR--
>UniRef50_B4CWD9(1-63:116) Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWD9_9BACT  E=2e-05 s/c=0.79 id=42% cov=33%
------------SEAVTERVQKETEKLGKYFDRITSCSVVIE-----------------------------------------------------
>UniRef50_B8EK85(5-112:209) Cold-shock protein DNA-binding n=2 Tax=Beijerinckiaceae RepID=B8EK85_METSB  E=5e-05 s/c=0.45 id=26% cov=99%
--LQIVFRDIQHSDALAKLIEDRARRLESAFSRITGCRVVAGAAHGATKNTIpplslcvEVEVPGrPMIVAKAEAKrkgEQAALVNRVFDVAERRLEQLselaKDNVRRH
>UniRef50_P0A147(1-94:102) Probable sigma(54) modulation protein n=32 Tax=Proteobacteria RepID=RP5M_PSEPK  E=6e-25 s/c=1.22 id=54% cov=97%
MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGEVVANAEHEDMYAAIDALADKLDRQLKKHKEK----
>UniRef50_A8ZTQ1(1-82:111) Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH  E=1e-15 s/c=1.02 id=36% cov=87%
MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLNIIGKEETEDMYAAIDLVMDKIE-------------
>UniRef50_A1ZNT3(1-96:100) Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae RepID=A1ZNT3_9SPHI  E=3e-15 s/c=0.86 id=33% cov=97%
MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRydnkvIEIKLNIPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK----
>UniRef50_D0LFC2(62-148:270) Ribosomal subunit interface protein n=20 Tax=Actinomycetales RepID=D0LFC2_GORB4  E=5e-15 s/c=0.95 id=33% cov=86%
-TVVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRrqskicQRVEITATGKGPIVRAQACGENFYAALEGSLDKLE-------------
>UniRef50_A3VRA6(1-84:197) Ribosomal subunit interface protein Y n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRA6_9PROT  E=1e-14 s/c=0.96 id=35% cov=87%
MDVQITGQGIDLGRALQDHVTETLSAgVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASGVFLASHgKGQDAYGAFDTALQKLE-------------
>UniRef50_C7RDL1(1-93:179) Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Anaerococcus RepID=C7RDL1_ANAPD  E=2e-14 s/c=0.86 id=30% cov=98%
MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLdNGRILRSETSDETYPTAIDRNIDGLLRQVRKNKTKL---
>UniRef50_D1YBK0(1-96:203) Ribosomal subunit interface protein n=3 Tax=Propionibacterium acnes RepID=D1YBK0_PROAC  E=7e-14 s/c=0.82 id=25% cov=93%
MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKgpkdqaMTCEITLRAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVK--------
>UniRef50_B9Z3V7(5-97:181) Cold-shock DNA-binding domain protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3V7_9NEIS  E=6e-12 s/c=0.77 id=26% cov=92%
--LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVglphrhSNQGEHYFVQIDMTAPGTEVVSNRQnHEDVYVALRDAFDAARRMLEDH-------
>UniRef50_D2QBL1(1-95:98) Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QBL1_9SPHI  E=6e-07 s/c=0.58 id=22% cov=89%
MQYTVDTIKIDLqtvgfneTTELVEQVESELRRIMRFRSDIVAADFYLREEGsnptENKLVRWRLGIPGNDLFAEGTGPSWAAGLRAAGDKLRRQ-----------
>UniRef50_C6WEC1(10-98:98) Putative uncharacterized protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WEC1_ACTMD  E=6e-06 s/c=0.58 id=31% cov=89%
MQLSLARR---VPEAAREYAGVKIGCLGKYAPGEVPfAMVRLSYDGPRRlVAHGTLHVDGHAVNADAGAETFIEVVDLLQDRLKAQLVK--------
>UniRef50_C5CTR1(1-104:119) Ribosomal subunit interface protein, putative n=1 Tax=Variovorax paradoxus S110 RepID=C5CTR1_VARPS  E=1e-05 s/c=0.49 id=23% cov=101%
MQIQVnTSNGINNKDALERWADAEIkQQLGRFVDDVTRVEVHLSDENHDKAgggdkcCVMEARLAHHQpLAVTQHATTLDEAFRGAADKLKRLLDNTLGRLNNH
>UniRef50_Q48ML3(1-102:142) Ribosomal subunit interface protein, putative n=6 Tax=Pseudomonadaceae RepID=Q48ML3_PSE14  E=1e-05 s/c=0.50 id=26% cov=99%
MQIQVNSdNHIESSIRLEEWVRTTVEStLEHYDENLTRVEVHIRDENGDKpgphdiKCQMEARPKGHQpISVSHKADTVDQAVDGAAVKLDHALEHLFGKLR--
>UniRef50_Q1N2T1(1-101:136) Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N2T1_9GAMM  E=3e-05 s/c=0.49 id=20% cov=99%
MKIIVNVRRLKISAELKKYIKRRLQfALGSRSDQIQRVEVVLSdlngpKGGEDKHCRMLLKLEGHqDVVIEDVDSEMQAVVDKAANRASLTVTKRLDRLR--
>UniRef50_B2S0F3(6-98:103) Ribosome-associated factor Y n=20 Tax=Borrelia RepID=B2S0F3_BORHD   E=7e-05 s/c=0.52 id=29% cov=97%
MEPKIQAINYHLSNSTKDFIIKKLEKLGTHIKQNSeSLKITIKKENDIFDIDAHLHFNwGKIIHIKEEGKELYHSIENLIERLQNTANKEKNK----
>UniRef50_Q4KI21(1-86:119) Ribosomal subunit interface protein, putative n=2 Tax=Pseudomonas fluorescens RepID=Q4KI21_PSEF5  E=0.0003 s/c=0.54 id=23% cov=83%
---------------MEEWVRSTVEStLERYEEDLTRVVVHLRDENGGKsgpddmRCQLEARPKGHQpVSVTHKADTLEQALDGATVKLESALEHMFGKLR--
