BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (95 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C...   118   7e-26
UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=...   116   2e-25
UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P...   116   3e-25
UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari...   116   3e-25
UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3...   114   9e-25
UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst...   112   3e-24
UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D...   112   4e-24
UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3...   112   4e-24
UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot...   112   4e-24
UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot...   111   7e-24
UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot...   111   7e-24
UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot...   111   7e-24
UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost...   111   8e-24
UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot...   111   8e-24
UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ...   111   8e-24
UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3...   111   9e-24
UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3...   110   2e-23
UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be...   110   2e-23
UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3...   109   3e-23
UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio...   108   4e-23
UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation...   107   1e-22
UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo...   106   2e-22
UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits...   106   3e-22
UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid...   106   3e-22
UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ...   106   3e-22
UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3...   106   3e-22
UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil...   105   4e-22
UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac...   105   6e-22
UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c...   105   6e-22
UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm...   105   7e-22
UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo...   103   1e-21
UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein...   103   2e-21
UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2...   103   2e-21
UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3...   103   2e-21
UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida...   103   3e-21
UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3...   103   3e-21
UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3...   102   4e-21
UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e...   101   5e-21
UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot...   101   6e-21
UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap...   101   7e-21
UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo...   101   1e-20
UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom...   100   1e-20
UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther...    99   2e-20
UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl...   100   2e-20
UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3...   100   3e-20
UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami...    99   3e-20
UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis...    99   4e-20
UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo...    99   4e-20
UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul...    99   4e-20
UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_...    99   4e-20
UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria...    99   4e-20
UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P...    99   4e-20
UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3...    99   5e-20
UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr...    98   6e-20
UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot...    98   6e-20
UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium...    98   7e-20
UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr...    98   8e-20
UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot...    98   1e-19
UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys...    97   1e-19
UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe...    97   2e-19
UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ...    97   2e-19
UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil...    96   3e-19
UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot...    96   3e-19
UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob...    96   3e-19
UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3...    96   3e-19
UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes...    96   4e-19
UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ...    96   4e-19
UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict...    96   4e-19
UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri...    95   6e-19
UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y...    94   1e-18
UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3...    94   1e-18
UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro...    94   1e-18
UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3...    94   1e-18
UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad...    93   2e-18
UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot...    93   2e-18
UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta...    93   2e-18
UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot...    93   3e-18
UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3...    92   4e-18
UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri...    92   5e-18
UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot...    92   5e-18
UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ...    92   7e-18
UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin...    92   7e-18
UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic...    91   9e-18
UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation...    91   1e-17
UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg...    91   1e-17
UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3...    91   1e-17
UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot...    91   1e-17
UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter...    91   1e-17
UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia...    90   2e-17
UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax...    90   2e-17
UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R...    90   2e-17
UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation...    90   2e-17
UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri...    90   2e-17
UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot...    90   2e-17
UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri...    90   3e-17
UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=R...    90   3e-17
UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Acti...    90   3e-17
UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3...    90   3e-17
UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3...    89   3e-17
UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu...    89   4e-17
UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG...    89   4e-17
UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea s...    89   5e-17
UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3...    88   6e-17
UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3...    88   8e-17
UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S3...    88   8e-17
UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p...    88   8e-17
UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation...    88   9e-17
UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens ...    88   1e-16
UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3...    88   1e-16
UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne...    88   1e-16
UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2...    88   1e-16
UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3...    87   1e-16
UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3...    87   1e-16
UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae...    87   1e-16
UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3...    87   2e-16
UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3...    87   2e-16
UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr...    87   2e-16
UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)...    87   2e-16
UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3...    87   3e-16
UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter...    87   3e-16
UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero...    86   3e-16
UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=...    86   3e-16
UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3...    86   3e-16
UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium...    86   4e-16
UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid...    86   4e-16
UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation...    86   4e-16
UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri...    85   5e-16
UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex...    85   6e-16
UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S3...    85   6e-16
UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3...    85   6e-16
UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro...    85   7e-16
UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A...    85   7e-16
UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact...    85   8e-16
UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re...    85   8e-16
UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3...    85   8e-16
UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S3...    85   8e-16
UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re...    85   9e-16
UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3...    85   1e-15
UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba...    85   1e-15
UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ...    84   1e-15
UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax...    84   2e-15
UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S3...    84   2e-15
UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3...    83   2e-15
UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3...    83   2e-15
UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kyto...    83   2e-15
UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation...    83   2e-15
UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3...    83   3e-15
UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3...    83   3e-15
UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Gro...    83   3e-15
UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida...    83   3e-15
UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil...    83   3e-15
UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor...    83   4e-15
UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro...    82   4e-15
UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa...    82   5e-15
UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3...    82   8e-15
UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick...    82   8e-15
UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorob...    81   9e-15
UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth...    81   9e-15
UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev...    81   1e-14
UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal...    81   1e-14
UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p...    81   1e-14
UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1...    81   1e-14
UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M...    81   1e-14
UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact...    81   1e-14
UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3...    81   1e-14
UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act...    81   1e-14
UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chl...    81   1e-14
UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3...    81   1e-14
UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal prote...    81   1e-14
UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi...    80   2e-14
UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R...    80   2e-14
UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=...    80   2e-14
UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p...    80   2e-14
UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell...    80   3e-14
UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3...    80   3e-14
UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Prop...    80   3e-14
UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3...    80   3e-14
UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=...    79   3e-14
UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA     79   4e-14
UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3...    78   6e-14
UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr...    78   6e-14
UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr...    78   1e-13
UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=...    78   1e-13
UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr...    78   1e-13
UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip...    77   2e-13
UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali...    77   2e-13
UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3...    77   2e-13
UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=...    77   2e-13
UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associ...    77   2e-13
UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw...    77   2e-13
UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation ...    77   2e-13
UniRef50_A3U9H3 Site-specific recombinase, phage integrase famil...    77   2e-13
UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S3...    77   2e-13
UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation...    77   3e-13
UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavob...    77   3e-13
UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M6...    76   3e-13
UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Camp...    76   3e-13
UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostri...    76   4e-13
UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S3...    76   4e-13
UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S3...    76   4e-13
UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr...    75   5e-13
UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation...    75   5e-13
UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bactero...    75   6e-13
UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S3...    75   6e-13
UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Ther...    75   7e-13
UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chi...    75   8e-13
UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac...    74   1e-12
UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Ro...    74   1e-12
UniRef50_A2TTF7 Site-specific recombinase, phage integrase famil...    74   1e-12
UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3...    74   1e-12
UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t...    74   2e-12
UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacte...    73   2e-12
UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S3...    73   2e-12
UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1...    72   5e-12
UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Ta...    72   5e-12
UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella bu...    72   5e-12
UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magneto...    72   6e-12
UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavoba...    72   7e-12
UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=...    71   7e-12
UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Act...    71   8e-12
UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S3...    71   1e-11
UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S3...    71   1e-11
UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce...    70   2e-11
UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3...    70   2e-11
UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia muc...    70   2e-11
UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S3...    70   2e-11
UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost...    70   2e-11
UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3...    70   3e-11
UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=...    70   3e-11
UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lu...    69   4e-11
UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum ...    69   4e-11
UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwen...    69   4e-11
UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho...    68   6e-11
UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3...    68   6e-11
UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavoba...    68   6e-11
UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Bla...    68   7e-11
UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3...    68   8e-11
UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal prot...    68   9e-11
UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylo...    68   1e-10
UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S3...    68   1e-10
UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroh...    68   1e-10
UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal pro...    67   2e-10
UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal p...    67   2e-10
UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia p...    67   2e-10
UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azo...    66   2e-10
UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplas...    66   3e-10
UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=p...    66   5e-10
UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl...    66   5e-10
UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntroph...    66   5e-10
UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S3...    65   6e-10
UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisp...    65   6e-10
UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verr...    65   6e-10
UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal p...    65   6e-10
UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax...    65   7e-10
UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Or...    65   8e-10
UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reineke...    64   1e-09
UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cyst...    64   1e-09
UniRef50_Q11G12 Sigma 54 modulation protein/ribosomal protein S3...    64   2e-09
UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S3...    63   2e-09
UniRef50_A5IBA4 Sigma 54 modulation protein YhbH n=4 Tax=Legione...    63   3e-09
UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spiroso...    63   3e-09
UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhiz...    63   3e-09
UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Ac...    63   4e-09
UniRef50_A0LCJ5 Putative sigma 54 modulation protein/ribosomal p...    62   6e-09
UniRef50_B4UF98 Cold-shock DNA-binding domain protein n=4 Tax=An...    62   7e-09
UniRef50_A4CQ98 Sigma-54 modulation protein n=1 Tax=Robiginitale...    61   8e-09
UniRef50_B8HME4 Cold-shock DNA-binding domain protein n=8 Tax=Cy...    60   2e-08
UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S3...    60   3e-08
UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 T...    59   4e-08
UniRef50_UPI00016C56FB hypothetical protein GobsU_19047 n=1 Tax=...    59   5e-08
UniRef50_A6CY25 Putative uncharacterized protein n=1 Tax=Vibrio ...    59   6e-08
UniRef50_D2MK58 Putative uncharacterized protein n=1 Tax=Candida...    58   1e-07
UniRef50_Q1IU45 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib...    57   2e-07
UniRef50_Q1D2Z7 Putative uncharacterized protein n=1 Tax=Myxococ...    57   2e-07
UniRef50_D2QHG3 Putative uncharacterized protein n=1 Tax=Spiroso...    56   2e-07
UniRef50_Q2IHD0 Putative sigma 54 modulation protein/ribosomal p...    56   3e-07
UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydroge...    56   3e-07
UniRef50_A5ETX8 Putative sigma 54 modulation protein/ribosomal p...    56   4e-07
UniRef50_Q2RYB7 Ribosomal subunit interface protein, putative n=...    56   4e-07
UniRef50_D0MIH4 Putative sigma 54 modulation protein/ribosomal p...    56   5e-07
UniRef50_A6W1F5 Putative sigma 54 modulation protein/ribosomal p...    55   8e-07
UniRef50_B4WI97 Putative uncharacterized protein n=1 Tax=Synecho...    55   1e-06
UniRef50_B4D6Y7 Putative sigma 54 modulation protein/ribosomal p...    55   1e-06
UniRef50_C3RQU3 Predicted protein n=1 Tax=Mollicutes bacterium D...    54   1e-06
UniRef50_Q21KB8 Putative sigma 54 modulation protein/ribosomal p...    54   1e-06
UniRef50_C5CAR2 Ribosomal subunit interface protein n=1 Tax=Micr...    54   2e-06
UniRef50_Q73N60 Ribosomal subunit interface protein, putative n=...    53   2e-06
UniRef50_A1WVP9 Ribosomal subunit interface protein, putative n=...    52   4e-06
UniRef50_C6WEC1 Putative uncharacterized protein n=1 Tax=Actinos...    52   6e-06
UniRef50_B2IF06 Cold-shock DNA-binding domain protein n=1 Tax=Be...    51   1e-05
UniRef50_Q1PZB4 Putative uncharacterized protein n=1 Tax=Candida...    51   1e-05
UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia R...    51   1e-05
UniRef50_Q11EM9 Cold-shock protein, DNA-binding n=1 Tax=Chelativ...    51   1e-05
UniRef50_D2QBL1 Putative uncharacterized protein n=1 Tax=Spiroso...    49   4e-05
UniRef50_A4VJU5 Ribosomal subunit interface protein, putative n=...    49   4e-05
UniRef50_C6QHD0 Cold-shock DNA-binding domain protein n=1 Tax=Hy...    49   5e-05
UniRef50_A7HIK3 Putative sigma 54 modulation protein/ribosomal p...    49   5e-05
UniRef50_C3XBE7 Predicted protein n=2 Tax=Oxalobacter formigenes...    49   6e-05
UniRef50_B1ZS48 Putative uncharacterized protein n=1 Tax=Opitutu...    49   6e-05
UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus...    48   7e-05
UniRef50_B4CWD9 Putative uncharacterized protein n=1 Tax=Chthoni...    48   8e-05
UniRef50_UPI00016A5540 putative RNA polymerase, sigma 28 subunit...    47   1e-04
UniRef50_A5FK95 Putative uncharacterized protein n=2 Tax=Flavoba...    47   2e-04
UniRef50_A4XWR8 Putative uncharacterized protein n=1 Tax=Pseudom...    47   2e-04
UniRef50_Q1N2T1 Putative uncharacterized protein n=1 Tax=Bermane...    46   3e-04
UniRef50_B2UIV4 Ribosomal subunit interface protein n=2 Tax=Rals...    46   4e-04
UniRef50_B1C667 Putative uncharacterized protein n=1 Tax=Anaerof...    46   5e-04
UniRef50_A4VGA6 Ribosomal subunit interface protein, putative n=...    45   5e-04
UniRef50_C5B5J5 Putative uncharacterized protein n=4 Tax=Alphapr...    45   6e-04
UniRef50_C5CTR1 Ribosomal subunit interface protein, putative n=...    45   0.001
UniRef50_A6CVQ4 Putative uncharacterized protein n=1 Tax=Vibrio ...    45   0.001
UniRef50_Q1NMP5 Sigma 54 modulation protein/ribosomal protein S3...    44   0.001
UniRef50_Q5P2J4 Putative uncharacterized protein n=4 Tax=Rhodocy...    44   0.002
UniRef50_C1ZHK6 Putative uncharacterized protein n=1 Tax=Plancto...    43   0.002
UniRef50_D0SNV4 Ribosomal subunit interface protein n=4 Tax=Acin...    43   0.002
UniRef50_B1ZSU6 Putative uncharacterized protein n=1 Tax=Opitutu...    43   0.003
UniRef50_B8EK85 Cold-shock protein DNA-binding n=2 Tax=Beijerinc...    41   0.008
UniRef50_UPI00016C6947 putative sigma 54 modulation protein n=1 ...    41   0.012
UniRef50_B4RFH3 Cold-shock DNA-binding domain protein n=1 Tax=Ph...    41   0.013
UniRef50_Q6APA9 Similar to cold-shock protein n=2 Tax=Desulfobul...    41   0.016
UniRef50_Q9Z7W7 Ribosomal protein S30AE n=5 Tax=Chlamydophila Re...    40   0.019
UniRef50_D0LQZ0 Putative uncharacterized protein n=1 Tax=Haliang...    40   0.020
UniRef50_Q0C2I5 Putative uncharacterized protein n=1 Tax=Hyphomo...    40   0.026
UniRef50_Q21YM4 Putative uncharacterized protein n=1 Tax=Rhodofe...    40   0.034
UniRef50_Q48ML3 Ribosomal subunit interface protein, putative n=...    40   0.035
UniRef50_A9BQF4 Ribosomal subunit interface protein, putative n=...    39   0.045
UniRef50_B2UIT9 Putative uncharacterized protein n=2 Tax=Ralston...    39   0.046
UniRef50_Q11UA1 Putative uncharacterized protein n=1 Tax=Cytopha...    39   0.049
UniRef50_B2UJI3 Putative uncharacterized protein n=2 Tax=Ralston...    39   0.054
UniRef50_B0MTU1 Putative uncharacterized protein n=1 Tax=Alistip...    39   0.062
UniRef50_D2R4D6 Putative uncharacterized protein n=1 Tax=Pirellu...    38   0.096
UniRef50_A8M8Q2 CBS domain containing protein n=1 Tax=Caldivirga...    38   0.097

>UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales
          RepID=Q97F93_CLOAB
          Length = 174

 Score =  118 bits (296), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+L ++G N+E+TE LRE V  + +KLE+YF    + +V L VEK     + T+  NG  
Sbjct: 1  MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       DMYA+ID + DKL RQ+ K K KL++ 
Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERR 95


>UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular
          organisms RepID=RP5M_SALTY
          Length = 95

 Score =  116 bits (293), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 90/95 (94%), Positives = 93/95 (97%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQLNITG+NVEITEALREFVT KFAKLEQYF+RINQVYVVLKVEKVTH SDATLHVNGGE
Sbjct: 1  MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHASAEGQDMYAAIDGLIDKLARQLT+HKDKLKQH
Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95


>UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria
          RepID=RP5M_PSEPK
          Length = 102

 Score =  116 bits (291), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 71/94 (75%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NI+G +VE+T+ LR++V  K A++E +FD+I  V V++KVEK+    +ATL + GGE
Sbjct: 1  MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          + A+AE +DMYAAID L DKL RQL KHK+K + 
Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEKQQS 94


>UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus
           ferrooxydans PV-1 RepID=Q0EWV9_9PROT
          Length = 212

 Score =  116 bits (291), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 65/95 (68%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           MQ++ITG +VE+TE ++ +VT K   L+  FD +  V+VVL VEK     + ++  NG  
Sbjct: 26  MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           IH S E +DMYA+IDG+IDK+ RQL +++ KL +H
Sbjct: 86  IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRH 120


>UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3
          Tax=Leptospirillum RepID=A3EWH8_9BACT
          Length = 176

 Score =  114 bits (287), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 57/93 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ +TG ++EITEA+R  V  K   L++      +  V+L VEK     + TLH NG  
Sbjct: 1  MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          IHA +   D+YA++D  +DKL RQL + K+K++
Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIR 93


>UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae
          RepID=Q1DDE8_MYXXD
          Length = 221

 Score =  112 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 56/95 (58%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ NIT      +++L+E+   K  ++ +  DR  + +VVL +E+  H +D T+H     
Sbjct: 1  MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +    +  DMYA+ID  +DK+ RQL +++DKLK H
Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSH 95


>UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA
          Length = 191

 Score =  112 bits (281), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 1  MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATL 54
          MQ+  ++G NVE+TE +RE+V  K ++L++Y D+I    V L V      +  +  +  L
Sbjct: 1  MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +V GG I A     DMYAAID   D L RQL K K +
Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTR 97


>UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11
          Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB
          Length = 182

 Score =  112 bits (281), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ  +T  ++E ++AL+ +   K  ++++Y D    V V L VEK+ H ++ T+   G  
Sbjct: 1  MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I A+ E  DMYA+ID + DK+ RQL + K+++K H
Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH 95


>UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10
          Tax=Clostridiales RepID=Q0B0B5_SYNWW
          Length = 181

 Score =  112 bits (281), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 57/92 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+  I G N+EIT+AL+++ T + +KLE+Y D + +  V L +E   H  + T+ +NG  
Sbjct: 1  MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
          +       DMY++ID + +KL +Q+ K+K +L
Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRL 92


>UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8
          Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH
          Length = 113

 Score =  111 bits (279), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/95 (48%), Positives = 70/95 (73%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ ITG++V++T+AL+ +V  KF +LE++FD +   +V+L VEK+   ++A L ++G  
Sbjct: 1  MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +HA    +DMYAAIDG+IDKL RQL KHK+K+  H
Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDH 95


>UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM
          Length = 180

 Score =  111 bits (279), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 60/95 (63%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+N+T  ++E ++ LR +   K +++++Y D     +VVLKVEK  H ++ T+  NG  
Sbjct: 1  MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I+ + E  DMY+AID L D L  Q+ K K+K+++ 
Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRR 95


>UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12
           Tax=Firmicutes RepID=Q2RLX7_MOOTA
          Length = 190

 Score =  111 bits (279), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 59/94 (62%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M+L I G N+ +T+ALR+++  +  K+E+Y D ++++ V L V +  H  + T+ +NG  
Sbjct: 16  MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +       DMY ++D +++KL +Q+ K+K +L +
Sbjct: 76  LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNK 109


>UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp.
          7_2_43FAA RepID=C1I442_9CLOT
          Length = 178

 Score =  111 bits (279), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++++   N   T AL+E +  K +K+++YFD   +    L V+K     + T+  NG  
Sbjct: 1  MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    +DMY +ID ++ KL RQ+ K + KL + 
Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRR 95


>UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6
          Tax=Proteobacteria RepID=Q0ADR1_NITEC
          Length = 111

 Score =  111 bits (279), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/91 (49%), Positives = 65/91 (71%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M LN+TGN+V IT A+R++VT+K  +  ++FD I  + V L V+K+   ++AT+H+ G E
Sbjct: 1  MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I   A+  DMYA+ID L DKLARQ+ KHK+K
Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEK 91


>UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella
          RepID=B0TYD3_FRAP2
          Length = 102

 Score =  111 bits (278), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG +VE+T+A++ +V  K  K+  YFD I    V+L VEK    ++A + V G E
Sbjct: 1  MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            A AE +D+YAAID L DKLARQ+ KHK+KL+ 
Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRD 94


>UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12
          Tax=Clostridia RepID=B0K3A9_THEPX
          Length = 181

 Score =  111 bits (278), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + ++G N + +T+ LR+ V    +KL +YF    +V  VL V+K  H ++ T+   G 
Sbjct: 1  MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             A     DMY +ID ++DK+ +Q+ KHK KLK  
Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96


>UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134
          Tax=Bacteria RepID=B8CYM6_HALOH
          Length = 184

 Score =  110 bits (276), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++   G N+++T AL+E+   K +KL +YFD    + ++ ++VEK  H  + T ++NG 
Sbjct: 1  MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +    E QDMYA+IDG+++KL RQ+ K+K K+ +
Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKINR 95


>UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria
          RepID=Q7W3J9_BORPA
          Length = 112

 Score =  110 bits (275), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 66/95 (69%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L+I G ++++T A+RE+V  K A++ ++FD +    V+L VE + H ++ T+ + G +
Sbjct: 1  MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IH  A  +++YAAID L+DK+ RQ+ KHKDK++ H
Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSH 95


>UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Anaeromyxobacter RepID=A7HIE3_ANADF
          Length = 185

 Score =  109 bits (274), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NIT  ++E TEAL+  V  +   +++Y DR ++ + VL VE + H ++ T+      
Sbjct: 1  MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  +A   DMYA+ID   DK+ RQL KHK+KL  H
Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNH 95


>UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM
          12809 RepID=C1SGY6_9BACT
          Length = 177

 Score =  108 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 53/85 (62%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  N+E+T+A+R++   K +KLE+YFD I    V+L+V+K  H  +  +   G  
Sbjct: 1  MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQL 85
          +    + +D+YA+ID  +DK+ +QL
Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85


>UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98
          Tax=Gammaproteobacteria RepID=A1RNM6_SHESW
          Length = 95

 Score =  107 bits (269), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 76/95 (80%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ + G+++EITE+LR +V  KF+KLE++F++I+ V+VVL VEK+   ++A +++ GGE
Sbjct: 1  MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A++E  DMYAAID LIDKL RQ+ KHK+KL +H
Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95


>UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium
          RepID=C9XLM7_CLODC
          Length = 187

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT-LHVNGG 59
          MQ+ ++G  +++T+ ++ +V  K ++LE+Y D  ++V V +  +K     + T + +NG 
Sbjct: 1  MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A     D+YAAID + DKL+RQ+ K+K K+K 
Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKD 95


>UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida
          DSM 20544 RepID=C9KNJ3_9FIRM
          Length = 181

 Score =  106 bits (266), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE- 60
             + G N+EIT +LRE+V  +  K+ +YFD +  + V+L V K  H  + T+ + GG  
Sbjct: 3  TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIL 62

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       DMY +ID +++KL RQ+ K K KL + 
Sbjct: 63 LRGEESTMDMYTSIDLVVEKLERQIHKQKTKLARR 97


>UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus
          fermentans DSM 20731 RepID=D2RIZ4_ACIFE
          Length = 181

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G N+E+T+AL+++V  +   + + F  + ++  V++VEK  HT + T+  +G  
Sbjct: 1  MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A     +MYA+ID  ++K+ RQ+ K+K +L + 
Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRLMKR 95


>UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21
          RepID=C0WCZ2_9FIRM
          Length = 180

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G N+E+T AL+++V  K   + + F  + ++  V+++E+  H  + T+  +G  
Sbjct: 1  MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    ++MYA+ID  ++K+ RQ+ K+K +L + 
Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRLMKR 95


>UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia
           sp. EuI1c RepID=D1V7P2_9ACTO
          Length = 283

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + + G +  + E  R  V  K AKLE+Y  ++ +V V L  E            + T+
Sbjct: 1   MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A   D Y+A+DG   KLA +L +  ++   H
Sbjct: 61  YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDH 101


>UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis
          315-B RepID=D1VUS0_9FIRM
          Length = 176

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L + G N+++ + L+     KF+KL++YF    Q   V   +K     + T+ + G  
Sbjct: 1  MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    QDM+ +ID  +DKL RQ+ K+K +LK+ 
Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKR 95


>UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli
          RepID=Q71WR7_LISMF
          Length = 187

 Score =  105 bits (262), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV----EKVTHTSDATLHVN 57
          + NI G N+E+TE +R++V  K  KLE+YF       V + +    +K     + T+ + 
Sbjct: 3  KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNA-KVEVTIPLP 61

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             + A     D+YA+ID ++DKL RQ+ KHK K+ +
Sbjct: 62 NLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNR 98


>UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms
           RepID=RP5M_RALEH
          Length = 116

 Score =  105 bits (262), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M   I+G++++IT  LRE+V  K  ++ ++FD++  V V+L V+          ++  LH
Sbjct: 1   MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + G +I   A  +D+YAAID L+DKL RQ+ ++KD+++ H
Sbjct: 61  LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGH 100


>UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria
          RepID=B5JSL3_9GAMM
          Length = 117

 Score =  105 bits (262), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/97 (51%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-- 58
          M +N+TG+++++T+ALR++V  KF +LE++FD + Q++V+L  EK  H ++A +HV    
Sbjct: 1  MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          GE+ A AE +DMYAAIDGL+DKL RQL KHK+KL  H
Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDH 97


>UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio
          yellowstonii DSM 11347 RepID=B5YI17_THEYD
          Length = 173

 Score =  103 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 61/94 (64%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ I G N+++TEAL++++  +  K E++    ++  V +  EK TH  D  L V+G  
Sbjct: 1  MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          I A  + +D+Y+A+D +++KL +Q+ K+K+K++ 
Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQN 94


>UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular
          protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans
          RepID=B0VJD6_9BACT
          Length = 178

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ IT  + E+T+A+R++V    +KL +YFD+I  ++ VL +E   +  + +LH     
Sbjct: 1  MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + + AE  DMY AID  ++K+  Q+ K KD++  H
Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDH 95


>UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2
          RepID=C0QJ65_DESAH
          Length = 179

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 63/95 (66%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ ++T   ++ ++AL+ +V  K  + ++  +   +  VVL VEK+ H ++ TL  +  +
Sbjct: 1  MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHA  E ++MY++ID L+DK+A Q+ K+KDK+++H
Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRH 95


>UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha
           proteobacterium BAL199 RepID=A8TSN7_9PROT
          Length = 202

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
           M++++ G  +++ + LR+ + +    +  +YF    +  V L  +     +D  +H+  G
Sbjct: 10  MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + A     D YAA     +++ +QL ++K +L+ H
Sbjct: 70  ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDH 106


>UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia
           amoebophila UWE25 RepID=Q6MED7_PARUW
          Length = 211

 Score =  103 bits (257), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 58/94 (61%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
            + ITG +VEIT++++ +   K +K+E++ DRI  V V++ ++K+ H  +  L     +I
Sbjct: 16  NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKI 75

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A   DMYA+ID  I +L  Q+ ++K K++ H
Sbjct: 76  QSQAATPDMYASIDKAIARLEAQIRRYKSKIQDH 109


>UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD
          Length = 180

 Score =  103 bits (257), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ--VYVVLKVEKVTHTSDATLHVNG 58
          M+  + G+N+ +T AL+++V  K A+L +YFDR     +YV + VE + H  + T+ VNG
Sbjct: 1  MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              A  +  DMYA+ID   DKL  Q+ ++K+KL + 
Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRR 97


>UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1
          Length = 207

 Score =  102 bits (255), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58
          MQ ++T    E TEAL+E+   +  ++++YF     V+VV+  E+   H  D T+ + NG
Sbjct: 1  MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +      + M+++ID +  K+ RQ+ ++KDKL+ H
Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTH 97


>UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338
           RepID=A4FNI8_SACEN
          Length = 231

 Score =  101 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
           M + + G NVE+ +  R+ V  K  +LE+Y  +  +  V L  E+           + TL
Sbjct: 1   MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D YAA+D    KL  +L +  D+ K H
Sbjct: 61  KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH 101


>UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8
           Tax=Proteobacteria RepID=Q122P6_POLSJ
          Length = 109

 Score =  101 bits (253), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
           M L I+G+++E+T ALR +VT+K  ++ ++FD++  V V+L V+          ++  +H
Sbjct: 1   MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G ++ A +   D+YAA+D L DKL RQ+ ++K K K H
Sbjct: 61  VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDH 100


>UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria
          RepID=RAIA_ECO57
          Length = 113

 Score =  101 bits (253), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 56/91 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +NIT   +EIT A+R+ V  + AKLE++   +   +++L  E     +DAT++   G 
Sbjct: 1  MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + AS + +DMY AI+ LI+KL RQL K + K
Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91


>UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium
          ATCC 15444 RepID=Q0BX30_HYPNA
          Length = 198

 Score =  101 bits (252), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          MQ+ ITG ++E+ EALR  +       + +YF R     V +  +      D  +H+  G
Sbjct: 1  MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + +S +  D YAA++  ++K+ +++ ++K +LK H
Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH 97


>UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus
           ATCC 17982 RepID=A7BEC8_9ACTO
          Length = 214

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + +   N EI    RE+V  K +K+ Q++ R  +V V L  E+           + T+
Sbjct: 1   MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A+  D YAA+D    KL  +L + +D++K H
Sbjct: 61  YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDH 101


>UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae
           RepID=Q5SIS0_THET8
          Length = 186

 Score =   99 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 1   MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATL 54
           M +  + G N+EIT+A+R++V  K A+L++Y D      VVL +    H      ++  +
Sbjct: 1   MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL---KQH 95
            + GG +    E  D+YAAID  +D+L  Q+ + +++    K+H
Sbjct: 61  DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRH 104


>UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA
          Length = 212

 Score = 99.6 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 57/94 (60%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
            + +TG +V +TEA++ +   K +K+++   RI  V + + ++K+ H  D  L V+  +I
Sbjct: 16  NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKI 75

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A   DMY +ID  +DKL RQL K+K +++ H
Sbjct: 76  KSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDH 109


>UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5
           Tax=Fusobacteriaceae RepID=C7N909_LEPBD
          Length = 106

 Score = 99.6 bits (248), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M++ I+G  ++IT+A++ +   K +++ +Y D I ++ VVL VE        H +D  + 
Sbjct: 1   MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +G +I   AE +D+YAAID L D+L RQ+ K+K++ K H
Sbjct: 61  ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDH 100


>UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2
          Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV
          Length = 96

 Score = 99.2 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          MQ NITG +++I+ ALRE +     +LEQ +  I    V L++ K    ++ TL +    
Sbjct: 1  MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +IHA    +DMYAAID L +KL +QL + K+KL++ 
Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96


>UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae
          RepID=C6M3U2_NEISI
          Length = 104

 Score = 99.2 bits (247), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 59/91 (64%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L ITG N ++TEA++ +V+ K  ++ ++      V + L VEK+   ++A +H+ G +
Sbjct: 1  MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +H  A  QDMYAAID L+DKL R + KHK+K
Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEK 91


>UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Methylophilales bacterium HTCC2181
          RepID=UPI0000E87FF9
          Length = 104

 Score = 99.2 bits (247), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 62/95 (65%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG++++IT A+  ++T+KF K+E +F ++  V   L VEK  H +++TLH+   +
Sbjct: 1  MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHA A   DMY AI+ LI KL  Q+ K+K+K   H
Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNH 95


>UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae
           RepID=B4RCJ5_PHEZH
          Length = 222

 Score = 99.2 bits (247), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
           M++ +TG +V++ EALR  V  + +  +E+YFDR     VV+  E      D  + +  G
Sbjct: 13  MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            ++     G D + A D  + K+ +++ ++K +LK H
Sbjct: 73  QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDH 109


>UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB
          Length = 209

 Score = 98.8 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-----HTSDATL 54
           M+L I G N++IT+ +R ++  K  +   +F  +  +V V L V +        T++ T+
Sbjct: 1   MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            VNG  I A    +++YA+ID + DK+AR+L K K+K + 
Sbjct: 61  FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEKRQD 100


>UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2
          Length = 193

 Score = 98.8 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI-NQVYVVLKVEKV-----THTSDATL 54
          M+L I GNN+ +TE++ ++V +K  K  ++F     +V V L V         H ++ T+
Sbjct: 1  MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + NG  I A    +++YA+ID + DK+ARQL K+K+K
Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK 97


>UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus
           marinus RepID=A2C0K6_PROM1
          Length = 194

 Score = 98.8 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLKVEKVT----HTSDATLH 55
           M+L I G N+E+T +LR++   K  K    F   + +  V L V +       T++ T+ 
Sbjct: 1   MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            NG  I A    +++YA+ID + +KLARQL K+K++   H
Sbjct: 61  ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH 100


>UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6
          Tax=Thermotogaceae RepID=B1LBB6_THESQ
          Length = 178

 Score = 98.8 bits (246), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQ--YFDRINQVYVVLKVE-KVTHTSDATLHVN 57
          M+  ITG  VEI+EA++ ++  +  K+++  Y D +    V ++ + K  +     +++ 
Sbjct: 1  MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G  I+      D+Y AID   D L +Q+ + K++LK H
Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH 98


>UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria
          RepID=RAIA_HAEIN
          Length = 107

 Score = 98.5 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M LNIT   ++IT A+RE +  + AKL ++  ++   + VL       + +A++    G 
Sbjct: 1  MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + ASA   DMY AI+ + +KL RQL K + K +  
Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESR 95


>UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46
           Tax=Bacteria RepID=Q28VX1_JANSC
          Length = 235

 Score = 98.5 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
           M+  I+G  +EI +AL+  V      + ++Y +R     VV          + T+H++ G
Sbjct: 45  MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
               A A   ++YAA +   DKL +QL ++K +LK H
Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDH 141


>UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium
          RepID=C9XIR4_CLODC
          Length = 183

 Score = 98.5 bits (245), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATL-HVNGG 59
          M + I+G  +E+T+A++  +  K +KL+ Y      V V +   K     + T+  VNG 
Sbjct: 1  MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A    +++Y AID + DKL++QL K+K +L+ 
Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQD 95


>UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter
           proteolyticus DSM 5265 RepID=B5Y948_COPPD
          Length = 190

 Score = 98.1 bits (244), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57
           ++++ G N+E+T A+++++  K  ++ +YFD I  V VV++ E+         + TL  N
Sbjct: 8   KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDAN 67

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           G  I A  E  D+YAAID   DKL   + + K+KL
Sbjct: 68  GRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKL 102


>UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM
          Length = 209

 Score = 97.7 bits (243), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + +    ++++ ALRE +  +    + +YF+R  + YV +  E      + ++H+  G
Sbjct: 1  MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60

Query: 60 E-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A  E  D Y A +  +++L ++L ++K KLK H
Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNH 97


>UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae
          RepID=C8P3U4_ERYRH
          Length = 180

 Score = 97.3 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M + I G NVEIT+A++E V  K   L +YF  D   +  VV+ V       + T+    
Sbjct: 1  MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          G + A    +D YAA+D ++DKL  Q+ +HK K+ +
Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISR 96


>UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae
          RepID=B9Y7S1_9FIRM
          Length = 178

 Score = 96.9 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M+  I G NV ITEA+R+ +  K + L++Y   D   +  VV++   +T   + T+    
Sbjct: 1  MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G +    E +D+YAAID  IDKL  Q+ + K +L + 
Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRR 97


>UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB
           RepID=Q2LSN2_SYNAS
          Length = 209

 Score = 96.5 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 55/93 (59%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M++++T  N E      ++V  +  +L +Y D    V+VVL VEK  + ++ ++  NG  
Sbjct: 31  MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
           +    E +DM+ AID  ++K+ RQL KHK+K++
Sbjct: 91  LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIR 123


>UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales
           RepID=RAFY_STRP6
          Length = 182

 Score = 96.1 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 4/98 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTH-TSDATLHVNG 58
           + +I G N+E+TEA+R++V +K  K+E+YF  D+     V LKV +      + T+ ++ 
Sbjct: 3   KFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDS 62

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL-KQH 95
             + A    QDMY +ID ++DK+ RQ+ K+K K+ K+H
Sbjct: 63  VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH 100


>UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3
           Tax=Psychrobacter RepID=A5WCB7_PSYWF
          Length = 132

 Score = 96.1 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 10/102 (9%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----------HTS 50
           M ++ITG+++ IT+A+++ V  K +K+E++FD+I  + V+L ++             H +
Sbjct: 1   MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           +A + V G E+   +   DMY AI  + DKL RQ+ K+K ++
Sbjct: 61  EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRI 102


>UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria
          RepID=A5CWW3_VESOH
          Length = 102

 Score = 96.1 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 68/95 (71%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQLNI+G++++ITEA+++    K  K++ +F+++  + ++L+V+K    ++A +HV+G +
Sbjct: 1  MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A AE  DMY +ID +++KL  Q+ KHK+KL  H
Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNH 95


>UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21
          Tax=Betaproteobacteria RepID=A9BRS9_DELAS
          Length = 119

 Score = 96.1 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
          M L I+G+++E+T +LR +V AK  ++ ++FD++  V V+L V           +  TL 
Sbjct: 1  MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          V G ++       D+YAA+D L DKL R + ++K + +
Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQ 98


>UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes
          RepID=D2BPB3_LACLK
          Length = 185

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTH-TSDATLHVNG 58
          + NI G NVE+T+A+R +V  K  KL++YF+       YV LKV        + TL    
Sbjct: 3  KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKN 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + A    QDMY++ID + +KL RQ+ K+K ++ +
Sbjct: 63 VTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNR 98


>UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ
          Length = 192

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58
          +  I G+N+ IT+A+R ++  K  KLE+YF+ +      +KV   +  T   + T+ +  
Sbjct: 3  RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKN 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + A     D+YA ID +  KL RQ+ K+K ++ +
Sbjct: 63 VTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNR 98


>UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus
          RepID=B5YF17_DICT6
          Length = 179

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
          MQ+N    NV IT+ L+++   K ++L ++FD I  + V+   E        H  + T+ 
Sbjct: 1  MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           NG  I AS   QD   +ID ++DKL  QL + K+KL  
Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVD 99


>UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium
          RepID=C3WBJ3_FUSMR
          Length = 183

 Score = 95.4 bits (237), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----VEKVTHTSDATLHV 56
          M++ I G  + IT+A++ +   K  ++E+Y D I ++ + L          HT++   ++
Sbjct: 1  MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  + AS    D+YAAIDG+ D L  QL KHKDK++ 
Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIRT 98


>UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4
           Tax=Actinomycetaceae RepID=C2BSF1_9ACTO
          Length = 219

 Score = 94.2 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ +   N EI    RE++  K AK+EQ   R  +V V L  EK           + T+
Sbjct: 13  MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D YAA+D    KL  +L + +D+ K H
Sbjct: 73  LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH 113


>UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5
           Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE
          Length = 191

 Score = 94.2 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTH-----TSDATL 54
           M + +TG  + +T+ALRE+   K     +  D       +VL VEK          + TL
Sbjct: 1   MSITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPANPRPAVCEVTL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I      +DMYAAID    K+ RQL K+K K+   
Sbjct: 61  RTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDR 101


>UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Mannheimia haemolytica serotype A2 str. BOVINE
           RepID=UPI0001BCF930
          Length = 129

 Score = 93.8 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M LNI+   ++IT A+R  +  + AKLE+Y  ++   + +L  +  +   +AT+    G+
Sbjct: 36  MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           + A AE +D+Y AI  +  KL  +L K K+K
Sbjct: 96  LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEK 126


>UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18
           Tax=Corynebacterineae RepID=A1T5Y3_MYCVP
          Length = 250

 Score = 93.8 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55
           ++ +TG NVE+ +  R +V  K ++LE++   +    V L  EK           + T  
Sbjct: 48  EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQHVEITAK 107

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  +   A     YAA++  + KL  +L K KD+ K H
Sbjct: 108 GRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH 147


>UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae
          RepID=B0U6N0_XYLFM
          Length = 105

 Score = 93.4 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 56/95 (58%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +   G  +E+T ALRE+V  K  +L+++F    ++   L + K+ H   AT+++ G  
Sbjct: 1  MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          ++A+A    MYAAID + DKL R + KHK+K   H
Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDH 95


>UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Psychromonas RepID=A1SRN9_PSYIN
          Length = 136

 Score = 93.4 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ IT   + IT+ +R  V  +F KLE+    +   +V++  E      +AT++V   +
Sbjct: 1  MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I A A+  D+Y AI  L  KL RQLTK+  K
Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKYLHK 91


>UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium
          KB13 RepID=B6BVF2_9PROT
          Length = 107

 Score = 93.4 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG N+EITEAL   +  KF K+ ++F+ I  V  +LK E   H ++  LH+   E
Sbjct: 1  MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I + A G DMY  ID LI K+ RQ+ K K+K K H
Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDH 95


>UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD
          Length = 189

 Score = 92.7 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDR---INQVYVVLKVEKVTHTS-----DA 52
           M++ + G N+ +T++L  +   K  ++ ++FD    + +  V L  E+    +     + 
Sbjct: 1   MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60

Query: 53  TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           TL +NG  + A    +DMYA+ID + DKL RQ+ +++ +    
Sbjct: 61  TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDR 103


>UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Verrucomicrobia RepID=B4D5R5_9BACT
          Length = 191

 Score = 92.3 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGGEI 61
           + +TG +V +T+ ++++ T++   L   + RI + +V+L VEK  H ++  LH  N   I
Sbjct: 10  VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHITI 69

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDK-LKQH 95
            AS E  DMYA+IDG+  K+A+Q+ K+K K L+ H
Sbjct: 70  EASHETDDMYASIDGVAAKIAQQMRKYKTKILRNH 104


>UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50
          RepID=A7VDW4_9CLOT
          Length = 170

 Score = 92.3 bits (229), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQD 69
          +++TE L+  V  K +KLE+YF       V   VEK     + T+ + G  I A     D
Sbjct: 5  IDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVSDD 64

Query: 70 MYAAIDGLIDKLARQLTKHKDKL 92
          MY +ID +++ + RQ+ +HK KL
Sbjct: 65 MYVSIDLVLEVIERQVNRHKKKL 87


>UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5
          Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5
          Length = 196

 Score = 92.3 bits (229), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + ++G ++ + +ALR  V  +  + L +YFD     ++ L  +     +D  LH++ G
Sbjct: 1  MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A +   D YA+ D  + ++ ++L ++K KLK  
Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDR 97


>UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation
          protein family n=1 Tax=Sorangium cellulosum 'So ce 56'
          RepID=A9G806_SORC5
          Length = 122

 Score = 91.5 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  ++  T+A++ +   K AKL+++  +     V L VE +TH +D  L      
Sbjct: 1  MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLT 86
           HA+  G+DMYA+ID + DKL RQ+ 
Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIR 86


>UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae
           RepID=A9WMP6_RENSM
          Length = 267

 Score = 91.5 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M+  I+G N+ +++  RE+ T K +KLE   +++ +V   +  +          T + T+
Sbjct: 26  MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I A A   D +AA D   +KL  +L + KDK K H
Sbjct: 86  QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLH 126


>UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes
          RepID=Y1964_STAS1
          Length = 190

 Score = 91.1 bits (226), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58
          +  I G N+ IT+A+R ++  K  KLE+YF+ +      +KV   +      + T+ +  
Sbjct: 3  RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLKK 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
            + A     D+YA ID + +KL RQ+ K+K 
Sbjct: 63 VTLRAEERNDDLYAGIDLINNKLERQVRKYKT 94


>UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15
           Tax=Desulfovibrionales RepID=Q310S7_DESDG
          Length = 190

 Score = 91.1 bits (226), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVNG 58
           M +  T  N E ++ L+++   +F KL ++ ++    ++ V+L V+K  H ++      G
Sbjct: 11  MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             + A  + +DMYA ID ++DKL  Q+ KH +K K
Sbjct: 71  LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105


>UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna
          RepID=B0S0M8_FINM2
          Length = 179

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          M+LN    ++++T+ L++   +K  KL++YF    Q  VV K EK     + T+ +  G 
Sbjct: 1  MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + A    +D+  AID + D LARQ+ KHK KL++ 
Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKR 96


>UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Hyphomicrobium denitrificans ATCC 51888
          RepID=C6QEK7_9RHIZ
          Length = 198

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          M + ITG N++   A + + + K    L +Y DR+   +V L+ E+    +  ++ + +G
Sbjct: 1  MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A  EG D Y ++D    +L  ++ ++K ++K H
Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNH 97


>UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
          Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ
          Length = 207

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV---- 56
          M++ +TG N E+T+  R  V  K  KLE++  RI +V V +K E+    +D  + +    
Sbjct: 1  MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60

Query: 57 --NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
             G  I A A   D  AA+D  +DK+A Q+ +  D
Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRRASD 96


>UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium
          RepID=A5TX76_FUSNP
          Length = 181

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M+L+I G  + +T+A+R++   K +K+E++ D I ++   L   K      H ++   ++
Sbjct: 1  MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          +G  + A+A   D+YA+ID  +D +   L KHK+K  +
Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSR 98


>UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia
          RepID=C4K0H4_RICPU
          Length = 192

 Score = 90.4 bits (224), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56
          M ++++G ++ I   L+E+   +  ++ ++YF  I  + +    E +    D  +     
Sbjct: 1  MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + ++    D+Y A D  + KL +QL K+K K K H
Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNH 99


>UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma
          laidlawii PG-8A RepID=A9NEZ2_ACHLI
          Length = 185

 Score = 90.4 bits (224), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNN-VEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57
          M+  I G N    T+A++ +V  K  K+   FD   I+ V VVL+V K     + T+   
Sbjct: 1  MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + +     DMYAAID  +DKL  Q+ +HK K++ H
Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHH 98


>UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales
          RepID=RP5M_BRAJA
          Length = 203

 Score = 90.0 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M L I+G +V + EALR  V+ +  + L +YFD     ++ L  +     +D  LH++ G
Sbjct: 1  MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A +   D YA+ D  +  + ++L ++K +LK  
Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDR 97


>UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33
          Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN
          Length = 122

 Score = 90.0 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 49/93 (52%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++NI+G++V++T++++E +  KFAK+  +F  +  + +++  E      + + +  G  
Sbjct: 1  MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          I A      MY AI     KL   L   K +LK
Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLK 93


>UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0MPR7_9FIRM
          Length = 211

 Score = 90.0 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
           M +NIT   +++T+A  ++ T K   KL+++F       V L  +K   T + T+   G 
Sbjct: 38  MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              +  +  D   A D  ID++ RQ+ K+K ++++
Sbjct: 98  IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEK 132


>UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21
          Tax=Shewanella RepID=A3QBU6_SHELP
          Length = 124

 Score = 90.0 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62
          + IT  + E+T  +RE + ++  KL ++  ++   +V++  EK     +A++ +    + 
Sbjct: 2  IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61

Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          A A+ +D+YAAI+ +  KL +QL +   K
Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHK 90


>UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria
          RepID=A8RDK2_9FIRM
          Length = 177

 Score = 89.6 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M++NI G N+ +T AL E +  K   LE+YF  D      VV++V       + T+    
Sbjct: 1  MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +       D+YAAID  IDKL  Q+ + K +L +
Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTR 96


>UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=Rhizobiales
          RepID=RP5M_RHIME
          Length = 190

 Score = 89.6 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + ++G ++EI ++ R  +  +  + + +YFD      V ++      ++D  LH++ G
Sbjct: 1  MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A+ +  +  +A D   +++ ++L ++K KLK H
Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH 97


>UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Actinomycetales
           RepID=D1BCP0_SANKS
          Length = 220

 Score = 89.6 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ + G + E+ +  R     K AK+EQ      +V V +  E            + T+
Sbjct: 1   MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRQSGIRERVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D + A+D  ++KL  +L +  D+ K  
Sbjct: 61  RDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKNR 101


>UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP
          Length = 178

 Score = 89.6 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58
          M++ IT  N+++T A+++F   +  K+E+Y D++    + L V+K     +   +HV N 
Sbjct: 1  MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A+A   D+Y AID    K   QL K K+K K  
Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSR 97


>UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT
          Length = 200

 Score = 89.2 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEIHASAEGQ 68
          +E ++ALR +   + AK+++YF    +V     VEK+ H +   + + NG ++H+S + +
Sbjct: 1  MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLRNGLQLHSSEKTE 60

Query: 69 DMYAAIDGLIDKLARQLTKHKDKLKQH 95
           MY++ID  + K+ RQ+ ++KD++  H
Sbjct: 61 SMYSSIDMALAKMERQVRRYKDRITNH 87


>UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii
          RepID=A9KDT2_COXBN
          Length = 96

 Score = 89.2 bits (221), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 54/95 (56%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + +TG  V+I+ ALRE    K  +++   D I+ ++++  + K+    DA + + G  
Sbjct: 1  MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I+A AE  DMY  +D L+ KL  QL+K+K K   H
Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDH 95


>UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO
          Length = 284

 Score = 89.2 bits (221), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVT---------HTS 50
           ++ + G ++EIT+++RE+   K  K   +FD   + +V V                   +
Sbjct: 81  KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKT 140

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           + T++   G I +  E  D+YA+ID + DKL R+L K K+K
Sbjct: 141 EVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEK 181


>UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LMC5_PICSI
          Length = 321

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L I G N ++T+A++ ++  K    ++++ + + +V V L +              + T
Sbjct: 89  RLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVGKGPKIRRCEVT 148

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G + A  E + +YA+ID + D + R+L K K+K   H
Sbjct: 149 LFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKDGGH 191


>UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7
          Tax=Gammaproteobacteria RepID=A6W0C2_MARMS
          Length = 105

 Score = 88.4 bits (219), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 4  NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHA 63
           I+G+++++T A+++ +  K +K+ +  D+I  V V L  +  +  ++A +H+ G EI A
Sbjct: 5  KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFA 64

Query: 64 SAEGQD-MYAAIDGLIDKLARQLTKHKDKLK 93
          SA  +D ++ AID ++DKLA+Q+ KHK K  
Sbjct: 65 SASSEDRLFHAIDDMVDKLAKQIDKHKTKQS 95


>UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Catenulispora acidiphila DSM 44928
           RepID=C7QBC3_CATAD
          Length = 237

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + +   + E+T+  R  V  K AK+E+   +   + VVL  EK           + TL
Sbjct: 1   MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60

Query: 55  HVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                  I A A   D Y+A+D    KL  QL + KD+ K H
Sbjct: 61  DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIH 102


>UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Brevundimonas subvibrioides ATCC 15264
           RepID=D0XRD3_9CAUL
          Length = 237

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQ-VYVVLKVEKVTHTSDATLHVN- 57
           MQ+ ++G +V++ EAL   ++ +  + + +YF+R  +   VV+  +      D  + +  
Sbjct: 19  MQVQVSGKHVDVGEALGSRISQELQEGVGKYFERGGENAEVVVSKDGYGFKVDCWVRLAS 78

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G  +  +  G D +AA    ++KL +++ ++K +LK H
Sbjct: 79  GQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDH 116


>UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29
          Tax=Actinomycetales RepID=C7MXY7_SACVD
          Length = 226

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M + I G NVE+ E  R  V  K A+LE+Y  ++    V L  E            + T 
Sbjct: 1  MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLA 82
             G  + A A   D Y A+D  I KL 
Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88


>UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2
          Tax=Alteromonadales RepID=Q21ND3_SACD2
          Length = 118

 Score = 88.1 bits (218), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+N++G++VE+T+A+R     KF K+  ++  ++ V V L VEK     +AT    G  
Sbjct: 1  MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          +   +   D+YAAI   + KL   L+  K 
Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRKG 90


>UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens
           RepID=A9TA00_PHYPA
          Length = 297

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-------HTSDAT 53
           +L I G ++E+T+A++++V  K          +  +V V + V              + T
Sbjct: 89  RLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGRGERLQRCEVT 148

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G + A  E + MYA+ID + D ++R+L K K+K   H
Sbjct: 149 LFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGH 191


>UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Rhodomicrobium vannielii ATCC 17100
          RepID=D2LB60_RHOVA
          Length = 199

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          M + +TG N+++ E+LRE+   +    L++Y  R     + ++       S   +H+ +G
Sbjct: 1  MTIKVTGKNIDLGESLREYALNRVESALDKYSGRSVSGQISVEKNTDGFFSHCAIHLESG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ ++  G D YA++D  +++L ++L ++K ++  H
Sbjct: 61 LDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH 97


>UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae
           RepID=C9M512_9BACT
          Length = 197

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHVNGG 59
           M +  T +N +I   ++E++  K  ++E++F RI  + V +K +K      + T   NG 
Sbjct: 16  MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       D+  A D  +  L R++ +HK+ L   
Sbjct: 76  VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYLIDR 111


>UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group
          RepID=Q9ZD30_RICPR
          Length = 143

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56
          M ++++G ++ I   L+E+   K  + +++Y   I  + +    E +    D  +     
Sbjct: 1  MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              I ++    D+Y A D  + KL +QL K K K K H
Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNH 99


>UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Parvibaculum lavamentivorans DS-1
          RepID=A7HPI1_PARL1
          Length = 193

 Score = 87.3 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          MQ+ ++G+++++ +ALR   T +    + +YFDR     V L  +     +D + H+ +G
Sbjct: 1  MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLA 82
            ++A     ++YA+ +  +++L 
Sbjct: 61 LRVNAQGTANEVYASFEAALERLE 84


>UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Victivallis vadensis ATCC BAA-548
          RepID=D1N462_9BACT
          Length = 114

 Score = 87.3 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++++TG   EIT ++RE+V ++   L E      +   VV+  +K +  +   ++    
Sbjct: 1  MKISVTGRQFEITPSIREYVESRIQALVEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYH 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + A  E  D+Y + D  + K+  QL   ++K++ H
Sbjct: 61 VVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSH 96


>UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus
          RepID=C7HV18_9FIRM
          Length = 177

 Score = 87.3 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+LNI G N+ + E+L+E    KF +L++YF++  ++ +    E      ++T+ + GG 
Sbjct: 1  MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60

Query: 61 I-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          I  A     +    ID +ID L RQ+ K K KL++
Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQR 95


>UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Synergistaceae RepID=D1B9M7_THEAS
          Length = 180

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +     NVE+  ++++ +  K  KLE++FDRI    V +  ++  +  + T ++NG  
Sbjct: 1  MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       D+  A +  +  + RQ+ +HKD L   
Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDMLVDR 95


>UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6
           Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS
          Length = 198

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV-----VLKVEKVTHTSDATLH 55
           M L +   N ++++  R+ +  K ++L++Y DRI++V V     + + E   H    T+ 
Sbjct: 6   MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65

Query: 56  VNGGEI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            + G +  A     ++YAAID + D L RQ+ ++KDK 
Sbjct: 66  GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH 103


>UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus
          RepID=Q6MPK4_BDEBA
          Length = 116

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 45/95 (47%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+LN T  +++ +E+L  +   + A++ ++  R     V     K     + +++     
Sbjct: 1  MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKY 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            A+A G D+Y A+D   +K+ +Q  K   + K H
Sbjct: 61 FKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDH 95


>UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4
          Tax=Acidithiobacillus RepID=RP5M_THIFE
          Length = 78

 Score = 86.5 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK---VEKVTHTSDATLHVN 57
          MQ+ ITG ++++T++++ +   K  +L +YFD ++   VVLK    EK+++  D T++  
Sbjct: 1  MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60

Query: 58 GGEIHASAEGQDMYAAID 75
          G   HA     DMY  ID
Sbjct: 61 GHVFHAEVHDADMYTGID 78


>UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH
          Length = 111

 Score = 86.5 bits (214), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ +T  N+E +E L++FV+ K  K ++ FD   +  V+L VEK  + ++  L  +   
Sbjct: 1  MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLA 82
          I    E +DMYAAID ++DK+ 
Sbjct: 61 IIGKEETEDMYAAIDLVMDKIE 82


>UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class)
           RepID=Q6AGI3_LEIXX
          Length = 232

 Score = 86.5 bits (214), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV-------EKVTHTSDAT 53
           M +NI G N+ IT+  RE+   K  K+    +R     + +         +      + T
Sbjct: 1   MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60

Query: 54  LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L      + + A G D YAA D  + KL  ++ + KD+ K H
Sbjct: 61  LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVH 102


>UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
          ATCC 29799 RepID=A6NQP5_9BACE
          Length = 181

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 45/95 (47%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+   T   V +   +  +   K  KL++YF    +  +V  VEK  +  + T+   G  
Sbjct: 1  MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I  +    DM+A ID  +  + RQL K+K +L++ 
Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKR 95


>UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons
           RepID=RR30_SPIOL
          Length = 302

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G N+E+++ +R  V  K  K + ++   + +V V L                + T
Sbjct: 76  KLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVT 135

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G I A  + + +Y++ID +   + R+L K KDK+  H
Sbjct: 136 LFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDH 178


>UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT
          Length = 110

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 54/91 (59%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT   +++T ++RE+V +KF KLE+    +   +V +  E   +  +A + +  G+
Sbjct: 1  MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + A AE +D++AAI+ L  KL RQ+ +H  +
Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRHIHR 91


>UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS
          571 RepID=A8IJQ7_AZOC5
          Length = 198

 Score = 85.7 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M L ++G N+++ EALR+  + + +++  +YFD     +  +  E   + S+  LH++ G
Sbjct: 1  MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A    Q+  A  D  ++K+ ++L ++K +LK  
Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKGR 97


>UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium
          capsulatum ATCC 51196 RepID=C1F1L9_ACIC5
          Length = 225

 Score = 85.7 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+  TG +V +  A R        ++ +   RI   +VVL  EK    ++ T+ +   +
Sbjct: 1  MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
          + ++AE   M  A+   ++K   Q  + K K+
Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKM 92


>UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation protein n=4
           Tax=Actinomycetales RepID=Q2JEZ4_FRASC
          Length = 267

 Score = 85.7 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + + G +  + E  R  V AK AKLE+    I +V V L  E+           + T+
Sbjct: 1   MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRLSDVCDRVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A   D YAA+D    KLA +L +  D+  +H
Sbjct: 61  YSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRH 101


>UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales
          RepID=A7VXE1_9CLOT
          Length = 183

 Score = 85.4 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGG 59
          M++ ITG  V + +  +E V  K  K  + F       V + VEK   T + T+   +G 
Sbjct: 1  MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             +     +M  A+D +++ L RQ+ K+K KL++
Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEK 95


>UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae
          RepID=A1ZNT3_9SPHI
          Length = 100

 Score = 85.4 bits (211), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLH 55
          M+L     +      L EF+  K  KLE ++DRI    V L++EK  H       +  L+
Sbjct: 1  MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + G  +          AA D  ++ L RQL KHK+K
Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96


>UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S30EA n=7
          Tax=Actinobacteridae RepID=A6WEN5_KINRD
          Length = 256

 Score = 85.0 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M++ +TG + ++ E  R  V  K  K+ Q+  R  ++ V L  E            + T+
Sbjct: 1  MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRQASSSERVEITV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
             G  + A A   D YAA+D    KL
Sbjct: 61 RDKGPVVRAEACADDPYAALDLATTKL 87


>UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Akkermansia muciniphila ATCC BAA-835
           RepID=B2UQU2_AKKM8
          Length = 197

 Score = 85.0 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEI 61
           + ITG +VE+T+A+REFVT K   +   F RI +V V+L V++    S   L   +   I
Sbjct: 10  ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHITI 69

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            AS EG DMYA ID  I K+ R++ KHK +L
Sbjct: 70  DASTEGTDMYACIDETITKIMRRMRKHKTRL 100


>UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Epulopiscium sp. 'N.t. morphotype B'
          RepID=UPI00016C04A0
          Length = 177

 Score = 85.0 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 54/94 (57%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+ ++   N E+T+ + + +    ++LE+YF+    + V + VEK   T +  ++ +G  
Sbjct: 1  MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          + A  EG++MY  +D ++  L RQ+ + ++KL+ 
Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLRT 94


>UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter
          RepID=RP5M_ACIGB
          Length = 113

 Score = 85.0 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----------THTS 50
          MQ+ I G+++ IT A+ E +  +F ++ ++ D++N + V L  +             H +
Sbjct: 1  MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60

Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89
          +A + + G E+ A A   DMY AI  L DKL RQL KH+
Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99


>UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides
          RepID=D2EW39_9BACE
          Length = 99

 Score = 84.6 bits (209), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56
          M++ I   + + +E L+ FV  K AKLE+++D I +V V LKV K        +   + V
Sbjct: 1  MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            GE +A+        A+D  ++ L +QL K+K+K + 
Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRS 98


>UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8
          Length = 99

 Score = 84.6 bits (209), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56
          M + I   + + T  L  F+  K +KLEQYFD I    V LKV K        +   L V
Sbjct: 1  MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            GE  A         AID  ++ L +QL K K+K++
Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIR 97


>UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO
          Length = 199

 Score = 84.6 bits (209), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK----LEQYFDRINQVYVVLKVEKVTHTSDATLHV 56
           M+  +    VE+TEAL  ++  + +K    L+++ D ++   V +  E+  +  + T H+
Sbjct: 1   MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60

Query: 57  N--GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           N     I       D+Y AID + D L R++ K K++L++
Sbjct: 61  NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQE 100


>UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Fibrobacter succinogenes subsp. succinogenes S85
          RepID=C9RQK5_FIBSS
          Length = 105

 Score = 84.6 bits (209), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59
          M +  +  +   +  L++ +  +  KL +++  I    V+L  E +     + ++++ G 
Sbjct: 1  MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEVEHQRHCEISVNITGS 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           I ASA+ ++M  A+D  ++++  QL K  DK   H
Sbjct: 61 VIVASADEENMGKAVDVTLERIKVQLKKANDKQNDH 96


>UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF
          Length = 234

 Score = 84.6 bits (209), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD------ATLH 55
           Q++ITG NVE+ E   E V  K AK+E+    +   +V L+ E     +D       T  
Sbjct: 25  QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             G    A A+    YAA++  + K+ R L K K +  
Sbjct: 85  GKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRS 122


>UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Sulfurihydrogenibium RepID=B2V794_SULSY
          Length = 187

 Score = 84.6 bits (209), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYF------DRINQVYVVLKVEKVTHT--SDA 52
           MQ+   G N+EIT+ ++ +   K  +L+ Y           +V VV   EK  H    D 
Sbjct: 1   MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60

Query: 53  TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            +++N   GG IHA  E  D+Y+AID +ID++ RQL + K + 
Sbjct: 61  DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRR 103


>UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum
          ATCC 49989 RepID=C7H0Q0_9FIRM
          Length = 176

 Score = 84.6 bits (209), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 52/93 (55%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++NI+  N   ++ L+E +  KF+KL++YF       ++++  K  +  +A L   G  
Sbjct: 1  MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +    +D Y A+D  + KL+RQ++K K KLK
Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLK 93


>UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12
          Tax=Flavobacteria RepID=A0M3Z9_GRAFK
          Length = 100

 Score = 84.2 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++N+   N    + L +F   K  KL+ YFD+I    V  KV+    K    ++  L V
Sbjct: 1  MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           GG+I          A +D  +  L RQL K K+K+  H
Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99


>UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp.
          PE36 RepID=A6FEI0_9GAMM
          Length = 128

 Score = 83.8 bits (207), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVNGG 59
          M   IT   +++T  + E +  K+AKLE++   +   +V +  +K      +A++H+  G
Sbjct: 1  MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          ++ A +EG+D+YAAI  L  KL RQL K+ +K   H
Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH 96


>UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Sphaerobacter thermophilus DSM 20745
          RepID=D1C3T1_SPHTD
          Length = 194

 Score = 83.8 bits (207), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M + I   N+ +T+AL+E++ ++  +L++   ++      ++ E+         +  T+ 
Sbjct: 1  MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTGGEQMVAQFTIA 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
               +    + +D++ AID  I+++ RQ+ + +DK 
Sbjct: 61 TKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKR 97


>UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM
          Length = 112

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  NV+ +++++E V       ++ ++ I   +V+L+       ++AT+HV G +
Sbjct: 1  MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I A A   ++YAA+D L DK+ RQL K   K
Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQK 91


>UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=bacterium Ellin514 RepID=B9XGM0_9BACT
          Length = 117

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M+L +T +N+ +T+A+   + ++  KLE +        V L  +              L 
Sbjct: 1   MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G ++ A     DMYAAID +  K+ +Q+ K + K K  
Sbjct: 61  VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKAR 100


>UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius
           DSM 20547 RepID=C7NFI2_KYTSD
          Length = 245

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           MQ+ +TG   ++T+  R  V  K  +L      I++  V+   E            + T 
Sbjct: 1   MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRRSEDAERIEITC 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           H     + A A  +  Y A+D ++ K+  ++ +  D+ K H
Sbjct: 61  HDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVH 101


>UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
          Tax=Candidatus Solibacter usitatus Ellin6076
          RepID=Q01PW5_SOLUE
          Length = 181

 Score = 83.0 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD---RINQVYVVLKVEKVTHTSDATLHVN 57
          M++  TG  VE+  A  + + A+FAK+ +  D   R  +V+V+L +E+  H ++AT++  
Sbjct: 1  MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            ++       D++ AIDG  +KL +Q  K + K + 
Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFRD 97


>UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5
          Tax=Alphaproteobacteria RepID=B0T677_CAUSK
          Length = 210

 Score = 83.0 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          MQ+ I+G +V++ EALR  V+ +    + +YFDR     VV+  E      D ++ +  G
Sbjct: 1  MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ +   G D +AA D  + K+  ++ ++K +LK H
Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSH 97


>UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT
          Length = 178

 Score = 83.0 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVTHTSDATLHVNG 58
          M+ NI   ++ +T+ ++E +  K AK+ +  D      + V +  E+  +  + T H+ G
Sbjct: 1  MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +     G D Y  ++ + + L R++ ++K++ +  
Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMR 97


>UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
           RepID=C6YXL0_ORYSJ
          Length = 321

 Score = 83.0 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++ E ++E +  K  + + ++   + +V V L                + T
Sbjct: 82  RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L     G I A  + +  YA+ID     + R+L K K+K   
Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183


>UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
          stuttgartiensis RepID=Q1PXY8_9BACT
          Length = 119

 Score = 83.0 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NGG 59
           + I   +++ITEA+R +   K  K++++F+ I  V V L +    +H  +  ++V  G 
Sbjct: 3  NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGP 62

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A A   DMY +ID ++DK+  QL KHK K++ 
Sbjct: 63 TIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIES 97


>UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein n=1 Tax=Porphyromonas uenonis 60-3
           RepID=C2MBI5_9PORP
          Length = 403

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57
            ++I     + +EAL++F   K  +L ++ D I++  + L+++K        +   L V 
Sbjct: 309 NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKIAAIRLFVP 368

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G + +A         AID  ID L RQ+ + K+
Sbjct: 369 GHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE 401


>UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia
          RepID=C6V4K5_NEORI
          Length = 186

 Score = 82.7 bits (204), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++ ++G+  ++  +L E++T +    ++++  +     V L  E      D  ++    
Sbjct: 1  MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           I AS E  D Y A D    K+  +L ++KD+LK+H
Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEH 96


>UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC
           700755 RepID=Q1VZQ7_9FLAO
          Length = 100

 Score = 82.3 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M +N    +V  +E L E VT K  KL+  +D I +  V  K E     K     +  L 
Sbjct: 1   MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMICEIKLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + AS+  +    AI   ID + RQL K K+K+  H
Sbjct: 61  APGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100


>UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula
          bermudensis HTCC2503 RepID=A3VRA6_9PROT
          Length = 197

 Score = 82.3 bits (203), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + ITG  +++  AL++ VT   +  +E+YFDR  +  V  + E   +  + TLH+  G
Sbjct: 1  MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60

Query: 60 EIHA-SAEGQDMYAAIDGLIDKLA 82
             A   +GQD Y A D  + KL 
Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLE 84


>UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Nautiliaceae RepID=B9L9D3_NAUPA
          Length = 166

 Score = 81.5 bits (201), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVN-G 58
          M + I G NVE+TEA+++ ++   +++E+Y   I    V ++ +K    T +  +++   
Sbjct: 1  MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G      + +DMYAA+D   DKL + L ++ DK+  +
Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDY 97


>UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli
          RepID=A8PQ11_9COXI
          Length = 111

 Score = 81.5 bits (201), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 64/94 (68%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ IT + +++T+AL++++  KF +LE+   + + +++ L +E +   + A +H +G E
Sbjct: 1  MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +A A+ +++Y AID LIDK+ +Q+ KHK K K+
Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKE 94


>UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorobiaceae
           RepID=Q3B2F4_PELLD
          Length = 130

 Score = 81.1 bits (200), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
            + +T  +     A+ E+  +    L + +  I   +V+L  +K        ++ TLHV 
Sbjct: 35  TIKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEKNKNAEITLHVP 94

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
             +  A   G      ID  +D L RQL K+K+K+
Sbjct: 95  QHDFIAKESGTAYELCIDACVDALGRQLQKYKEKM 129


>UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium
           RepID=A9W5P1_METEP
          Length = 202

 Score = 81.1 bits (200), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 3   LNITGNNVEITEALREFVTAKFAK-LEQYFDRINQV----YVVLKVEKVTHTSDATLH-V 56
           L +TG+ +++  ALR  V  + A  L +Y D         +V L+ +   + +D  LH V
Sbjct: 4   LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G  + AS    D++A+ +   DKL ++L ++K KLK H
Sbjct: 64  TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDH 102


>UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae
          ATCC 51259 RepID=C9LEJ2_9BACT
          Length = 114

 Score = 81.1 bits (200), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M+L I      +TE L+ F+  KFAK+ ++ + I+   V+LKV K       ++   ++V
Sbjct: 1  MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
           G   H           +D  ++ + RQL+K+K+K +
Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQR 97


>UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales
           RepID=C6II14_9BACE
          Length = 123

 Score = 81.1 bits (200), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56
           M + I   + + +E L+ F+  K +KLE+Y++ I +V V LKV K        +   + +
Sbjct: 25  MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             GE +AS        A+D  ++ L +QL K+K+K + 
Sbjct: 85  PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRS 122


>UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4
           Tax=Betaproteobacteria RepID=Q3SIX5_THIDA
          Length = 189

 Score = 81.1 bits (200), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52
           M+  L IT  ++E +EAL   +  K  KLE +F  I    VVL      K +        
Sbjct: 1   MKTPLQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRI 60

Query: 53  TLHVNGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + V G EI  +    +D+Y A+    D   RQL  +  +L++
Sbjct: 61  DIGVPGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRRLRR 103


>UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
           bicolor RepID=C5WRX8_SORBI
          Length = 310

 Score = 81.1 bits (200), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++++ L+E +  K  + + ++   + +V V L                + T
Sbjct: 73  RLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELGRGPKTSRCEIT 132

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           L     G + A  + +  YA+ID     + R+L K K+K
Sbjct: 133 LFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK 171


>UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum
           infernorum V4 RepID=B3DYI7_METI4
          Length = 115

 Score = 81.1 bits (200), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-------KVTHTSDAT 53
           MQ+ I+   V++T+AL   + +KF KL +  +RI    V +  E              A 
Sbjct: 1   MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60

Query: 54  LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L++ G +I A   G D+Y A+D ++D+LARQL K K  L  
Sbjct: 61  LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTD 101


>UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes
          RepID=C6Y270_PEDHD
          Length = 115

 Score = 80.7 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M++ +   +    + L +F+  K  KL+Q+FD+I    V LK+E         S+  L V
Sbjct: 1  MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
           GG + A  + +    A D  I+ L +Q+TKHKDK +
Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTR 97


>UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3
          Tax=Anaerococcus RepID=C7RDL1_ANAPD
          Length = 179

 Score = 80.7 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          M+LN+   N  +T+ +R     KF +L++YF    ++ V    E      + T  + NG 
Sbjct: 1  MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           + +    +    AID  ID L RQ+ K+K KL
Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKL 93


>UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales
           RepID=D0LFC2_GORB4
          Length = 270

 Score = 80.7 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55
            +  +G NVEI +  R +V  K A+LE++   I +  V L  E+           + T  
Sbjct: 62  TVVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITAT 121

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQ 84
             G  + A A G++ YAA++G +DKL  +
Sbjct: 122 GKGPIVRAQACGENFYAALEGSLDKLESR 150


>UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales
           RepID=A8J8B2_CHLRE
          Length = 286

 Score = 80.7 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK--------VEKVTHTSDA 52
           ++ I G  + +T+A++ +V  K AK +  +   + +V V L           K     + 
Sbjct: 71  RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 130

Query: 53  TLH-VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           T++ +  G +       ++YAAID + DK+  +L K K+K
Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 170


>UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD
          Length = 196

 Score = 80.7 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55
            + I+G  V I+EALR  V  K     + FD       VVL+V+K        T++ T+ 
Sbjct: 3   DIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTVF 62

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V    +  +A   DMYAAID   DK++RQL K+K K+ + 
Sbjct: 63  VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVER 102


>UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=2
          Tax=Planctomyces RepID=C1Z9P6_PLALI
          Length = 114

 Score = 80.7 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59
          MQ+ IT  +  I+   +E +  K  KL  YF R+  + V +  E    T +  +      
Sbjct: 1  MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHKH 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  A+  G ++       + K+ +Q+ K+K+K++ H
Sbjct: 61 DFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDH 96


>UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae
          MZO-3 RepID=A2PYC3_VIBCH
          Length = 78

 Score = 80.4 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 55/70 (78%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NI G+++++T++++++V +KF KLE++FD IN V V+L+VEK+   ++ATLHVN  E
Sbjct: 1  MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60

Query: 61 IHASAEGQDM 70
          IHA A+ +  
Sbjct: 61 IHAHADDETC 70


>UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR
          Length = 256

 Score = 80.4 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M  NI G NV IT+ +RE +  K   ++ + DRI    ++       +T   T+      
Sbjct: 1  MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           H   + +D+Y AID +  K+ R++ K K++
Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKER 91


>UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR
          Length = 209

 Score = 80.0 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 3   LNITGNNVEITEALREFVTAKFA-KLEQYFDR--INQVYVVLKVEKV-----THTSDATL 54
           + I G N+E+T AL E V  +   ++ +      I +  V+L V K       H  +   
Sbjct: 13  VIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSVSKNPKVKNGHRVEVVT 72

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           ++ G  I    E  DMYA+ID     L R+L K+KD
Sbjct: 73  NLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108


>UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD
          Length = 125

 Score = 80.0 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATL 54
           M+L +   + +    L  F+  K  KL+ ++DRI    V LK+ K  +T       +  L
Sbjct: 1   MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +V GG +    +G     A D  ID L  Q+ K K+K   
Sbjct: 61  YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNN 100


>UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1
          RepID=C0QU53_PERMH
          Length = 188

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI------NQVYVVLKVEKVTHT--SDA 52
          M++   G N+++TE ++ +   K  +L+ Y   I       +V V    EK  H    D 
Sbjct: 1  MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60

Query: 53 TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTK 87
           ++     GG IHA  E  D+Y+AID +ID++ RQL +
Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVR 98


>UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8
           Tax=Chlorobiaceae RepID=B4S5H7_PROA2
          Length = 110

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
            + +T  +      + ++       L++ F  I   +V+L  +   +     ++ T+HV 
Sbjct: 12  NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVP 71

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + A   G     AID  +D + RQL K+K+KL+ H
Sbjct: 72  QQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAH 109


>UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Propionibacterium
          acnes RepID=D1YBK0_PROAC
          Length = 203

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M++ ++G +  +++ +R  V  + + +E+  DR+ +  VV   +          T + TL
Sbjct: 1  MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITL 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
             G  + A  + +D   A D   D+L  QL K  D
Sbjct: 61 RAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAAD 96


>UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT
          Length = 177

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M    +    + + A+ E++  +F K+++    + I    +  + + + +   A ++  G
Sbjct: 1  MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            I    +  D+Y AID L D L +++ K K  +++ 
Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVRER 97


>UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN
          Length = 195

 Score = 79.2 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55
            + I+G  V +++ALR  V  K     + FD +     VVL+V+K        + + T+ 
Sbjct: 3   DIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTVF 62

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           V    +   + G DMY AID   +K+ RQL K+K ++  
Sbjct: 63  VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVD 101


>UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA
          Length = 172

 Score = 79.2 bits (195), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-------SD 51
           M   L IT   +E +EAL E +     KLEQ++D I   +VV++ E   H          
Sbjct: 62  MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVE-EPHRHKQHGRHFHVR 120

Query: 52  ATLHVNGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + V G  I AS +       +D Y A+    D   RQL  + D L  H
Sbjct: 121 VDVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTH 170


>UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT
          Length = 119

 Score = 78.4 bits (193), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ++G N+++TEAL++ V +  + +   + ++N+  VVL         +  LH N   
Sbjct: 1  MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87
          + A AE  DMY +I   +D+L RQL K
Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEK 87


>UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6
          Tax=Leptospira RepID=B0SB82_LEPBA
          Length = 95

 Score = 78.4 bits (193), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++N T  +++ +EA   +   K  ++ ++  +I    V  +       ++  L+ +G  
Sbjct: 1  MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +A  + +D+Y  IDGL DK+  Q +KH DK  QH
Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95


>UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae
           bacterium DG1235 RepID=B5JG17_9BACT
          Length = 123

 Score = 77.7 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDATLH 55
            L ITG ++++TEA+++ V  K  +L ++ +RI +V V L+        +    +   + 
Sbjct: 8   DLIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIE 67

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88
           +NG  ++ S    D Y A+D L+DKL R L + 
Sbjct: 68  INGPTMNVSVSDPDCYKAVDLLVDKLDRMLRRR 100


>UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2
           Tax=Proteobacteria RepID=A4U0N1_9PROT
          Length = 120

 Score = 77.7 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV----------VLKVEKVTH 48
           MQ  L IT + ++ +EA+   V  K AKLEQ+FDRI    V           L  +  ++
Sbjct: 3   MQNPLQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESDHKNSSNLHHKGNSY 62

Query: 49  TSDATLHVNGGEIHAS---AEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                L+V G E+       E +D+YAA+ G    + RQL ++  + +
Sbjct: 63  LVRIDLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEYVARSR 110


>UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4
           Tax=Bacteroidetes RepID=A2U255_9FLAO
          Length = 100

 Score = 77.7 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M +N   ++VE +E L  + T K  KL   F  I +  V  K E           +  L 
Sbjct: 1   MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTSSDNTGMICNIRLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G  + A A   +  ++I+  +  L  QLTK KDK+  +
Sbjct: 61  VPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMSTY 100


>UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
          17216 RepID=B0MSP2_9BACT
          Length = 98

 Score = 77.3 bits (190), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56
          M + I     +    L EFV  K  KL+++ +R     V+LK++K        +   LH+
Sbjct: 1  MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G ++ A + G+    A+D  I+ L RQ+ K+K +L++
Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK 98


>UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2S0T2_SALRD
          Length = 132

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVNG 58
           Q  +T  +V++++ + E+   + AKLEQ++D I   +V+L  +       T+   + V  
Sbjct: 30  QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQ 89

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             + A         AI+  +D L RQL K+K KL+ 
Sbjct: 90  KRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRS 125


>UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP
          Length = 127

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLHV 56
           ++ + G +  +T+A++E +  KF+ L ++ D I ++ V +  +     +  +T+ A + +
Sbjct: 12  KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEI 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            G ++ ASAEG+D Y  ID L++KL RQL   + + K 
Sbjct: 72  GGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKD 109


>UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1
          Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS
          Length = 211

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          MQ+ + G  +++ +ALR  VT   + L  +YF       VV+  +     +D  +HV  G
Sbjct: 1  MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKL 81
            + +  E  + Y A D   +K+
Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKV 83


>UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associated protein n=1
          Tax=Gramella forsetii KT0803 RepID=A0M1S9_GRAFK
          Length = 99

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M+      N++ +E L  F   K  KLE  +D I +  +  K +       + ++  L  
Sbjct: 1  METIFEFVNIDKSENLEAFTQKKLNKLETKYDWIVRANIFFKRDENKKPNGYITEVRLSA 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G EI A ++     A+I      L RQ  K K K+  H
Sbjct: 61 PGPEIFAQSDENSFEASIAETTRDLDRQCEKRKAKMSTH 99


>UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia
          psychrerythraea 34H RepID=Q487B8_COLP3
          Length = 111

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ I+G++VEITE +++ +  KFAK+ +++  I  +   + VE      + T    G +
Sbjct: 1  MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          +  +A  + +Y AI  +  KL   L   K 
Sbjct: 61 VTVNASDKQLYVAIAKVAKKLQSALAHRKG 90


>UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment)
           n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL
          Length = 192

 Score = 76.5 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ + G + E++   R  + +K AK+EQ   R  +V V++  E            + T+
Sbjct: 1   MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRQSGSSEKVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I A A   D YAA+D  + +L  +L + +D+ K H
Sbjct: 61  VDKGPVIRAEACADDAYAALDVALGRLLERLRRARDRRKDH 101


>UniRef50_A3U9H3 Site-specific recombinase, phage integrase family/ribosomal
           subunitinterface protein n=3 Tax=Flavobacteria
           RepID=A3U9H3_9FLAO
          Length = 100

 Score = 76.5 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
           M++N    +V  +E L  F T K  KL   +D I +  V  K E          ++  L 
Sbjct: 1   MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENTSEPDTGMIAEIRLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + A +   +   A+  + ++L  QL K K  +K +
Sbjct: 61  APGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRKASMKTY 100


>UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Actinomycetales RepID=A0LVS3_ACIC1
          Length = 322

 Score = 76.5 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5  ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHVNG 58
          +T   VE+   +R +V  K AK+E+   ++ +V V +  E+           + T    G
Sbjct: 1  MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRLADSCERVELTCISAG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            I A A  + M AA D   +KL  +L K  D+ + H
Sbjct: 61 PPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVH 97


>UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
          Tax=Candidatus Koribacter versatilis Ellin345
          RepID=Q1IR29_ACIBL
          Length = 198

 Score = 76.5 bits (188), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 44/94 (46%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G    IT A+R+ V +   KL +      +  V+L VEK  + ++ T+     +
Sbjct: 1  MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          +    E  DM  AI   ++ + +Q  KH ++ + 
Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQALKHNNRRRN 94


>UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae
          RepID=C6X055_FLAB3
          Length = 96

 Score = 76.5 bits (188), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++++    +     L E +  K +KLE Y+D+I +  V LKVE    K   T++  L V
Sbjct: 1  MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVENKSDKENKTAEIILAV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G +I           ++D   +   R L K K+
Sbjct: 61 PGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE 94


>UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ
          Length = 309

 Score = 76.1 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++ E ++E +  K  + + ++   + +V V L                + T
Sbjct: 82  RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L     G I A  + +  YA+ID     + R+L K K+K   
Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183


>UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Campylobacterales
          RepID=D1B1B4_SULD5
          Length = 171

 Score = 76.1 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M  +I G   ++TE ++ ++      L +Y   I  V  V+  +    K   + +  +++
Sbjct: 1  MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADEKNGKKGFSVEFAINM 60

Query: 57 NGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               +    + +D+YAA+D  +++  + L +H DKL  
Sbjct: 61 AHKNTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNS 99


>UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostridium
          methylpentosum DSM 5476 RepID=C0E9I9_9CLOT
          Length = 180

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62
          +NIT    E+ +  ++ +  +  ++++         V L      +  D T+   G  I 
Sbjct: 2  INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIR 61

Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            A  + +  +ID  +D L R+L K K  L  
Sbjct: 62 GEAAAEKIEPSIDFAVDDLKRKLRKLKTSLVD 93


>UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S30EA n=7
           Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC
          Length = 180

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
           M L+ITG   E+T++++ +V + F  L +Y   I     V+  +    K     D  +++
Sbjct: 1   MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADERNGKKGFIVDFLINL 60

Query: 57  -NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                I    + +D+YAAID + ++ ++ L +  DK   H
Sbjct: 61  AKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTH 100


>UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB
          Length = 190

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 14/107 (13%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52
           MQ  L +T  +++  +ALR  +  +  +L+  FD I   +V L+     H          
Sbjct: 1   MQTPLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRQGNLYEVTI 60

Query: 53  TLHVNGGEIHASAEGQDMYA------AIDGLIDKLARQLTKHKDKLK 93
            L V G E+       D+ A      AI      + RQL  HK ++ 
Sbjct: 61  ELRVPGTELVVHPTKGDVPAHEHPQVAIRDAFTAIERQLRAHKQRIS 107


>UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria
          RepID=B6EGD2_ALISL
          Length = 120

 Score = 75.3 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLE--QYFDRINQVYVVLKVEKVTHTSDATLHVNG 58
          M++ ITGNN++IT  +RE +  KF KLE  ++ D I +   V K     H  +A + + G
Sbjct: 1  MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G++ ASAE +D++  I  +  KL RQL K + K +  
Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEAR 97


>UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=3
           Tax=Campylobacterales RepID=Q30TJ3_SULDN
          Length = 180

 Score = 75.3 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----LKVEKVTHTSDATLHV 56
           M +++TG +VE+T+A++  + A    L +Y   I  V V+     K  K     +  +++
Sbjct: 1   MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIASTQTKKGKDHSVVEFVINL 60

Query: 57  NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                I      QD+YAAID    +  + + +  D+   H
Sbjct: 61  AHKNSIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGH 100


>UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bacteroides
           RepID=B5D3P6_9BACE
          Length = 113

 Score = 75.3 bits (185), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56
           M++ I   + + ++ L  F+  K  KLE++ D I +V V LKV K        +   +  
Sbjct: 15  MEVRIQSIHFDASDKLEAFIQKKAEKLEKFCDNIMKVEVSLKVVKPETAMNKEAGVRVLA 74

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              E +A         +ID  ++ L++QL K K+KL+
Sbjct: 75  LNSEFYAEKISDTFEESIDVCMEALSKQLLKAKEKLQ 111


>UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Thermotogaceae RepID=A6LJQ7_THEM4
          Length = 176

 Score = 75.3 bits (185), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 48/93 (51%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+  I+   VE TEAL+ ++  +  K+++  +   ++ V L+ +   +     +H  G +
Sbjct: 1  MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          +  S +  D+Y  ID L D   +++ + +D ++
Sbjct: 61 LVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVR 93


>UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus
          TCF52B RepID=B7IG48_THEAB
          Length = 176

 Score = 75.0 bits (184), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 46/95 (48%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M   ++    ++T A++ ++  +F K+++  +    + + L+ +  +    A +H  G +
Sbjct: 1  MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  +    D+Y  ID L D   ++L + ++ ++  
Sbjct: 61 LVVTETSDDIYNLIDILSDAFEKKLKREREYVRTR 95


>UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chitinophaga
          pinensis DSM 2588 RepID=C7PUF5_CHIPD
          Length = 99

 Score = 75.0 bits (184), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55
          M + I   + +    L + V+ K  KL  ++DRI  V V LK++ + H      ++  +H
Sbjct: 1  MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHQVKDKIAEIKVH 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +   ++    E +    + D   D +  Q+ K K+K
Sbjct: 61 IPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK 96


>UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria
           RepID=B8GU63_THISH
          Length = 192

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 16/109 (14%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           + +T  N++ + A+ + V A+  KL Q+ D I    VV++       +   +     L V
Sbjct: 9   VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68

Query: 57  NGGEIHASAE------GQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95
             GE+ AS E       +D+Y A+    D + RQ    L K + ++K H
Sbjct: 69  PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGRVKHH 117


>UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp.
           GAI101 RepID=B7RH54_9RHOB
          Length = 192

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLHVNG 58
            +T  +++ ++A+   V  +  KLE     I +  V ++     H       D +L + G
Sbjct: 6   EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKGTEYIIDISLQMPG 65

Query: 59  GEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             +H            D+Y AI    + + RQL + +D+ K  
Sbjct: 66  STLHIDRHPGDDHAHTDIYVAIRDAFNAMERQLRRWQDQHKGR 108


>UniRef50_A2TTF7 Site-specific recombinase, phage integrase family/ribosomal
          subunit interface protein n=4 Tax=Bacteroidetes
          RepID=A2TTF7_9FLAO
          Length = 103

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M + I    ++ +EAL  ++  K  KL + +D + +  V++K E          +  L V
Sbjct: 1  MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKETAQTHHNAICEIELSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  I A ++ ++   A+   I  L  QL K K +   
Sbjct: 61 PGPRIFAQSQEKNFEVAVKETISDLDVQLKKRKAQFTN 98


>UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Aquificaceae RepID=B4U9J0_HYDS0
          Length = 200

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYF----DRINQVYVVLKVEKVTH-------- 48
           MQ+   G + EITE LR FV +K +K ++      +   ++ V +   +  H        
Sbjct: 1   MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60

Query: 49  ---TSDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
                D  +++    GG +HA  E +D+Y AID ++D++ RQL K K++ 
Sbjct: 61  SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKERR 110


>UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis
          Bt407 RepID=C3CTB3_BACTU
          Length = 181

 Score = 73.8 bits (181), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L +TG +V +TE ++  +  K   L ++      V V ++VEK   T   ++  NG  
Sbjct: 4  MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEK-RLTISVSVPFNGEL 62

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          I+A ++ +D Y A+D ++DK+ RQ+T  KD
Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKD 92


>UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacteraceae
           RepID=Q0BUA9_GRABC
          Length = 236

 Score = 73.4 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
           M + ++G  +++++AL+E V ++   +  +YFD+  +  V     +     D  LH   G
Sbjct: 35  MHITVSGKQIDLSDALQERVASQLDTISRKYFDQALEAQVTFSRLRSFFICDINLHAGRG 94

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             +    E  D   A D   + +A++L +++ ++  H
Sbjct: 95  LILRGEGEAADANGAFDDAAEHIAKRLRRYRRRMNAH 131


>UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB
          Length = 180

 Score = 73.4 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV-N 57
           L+I G N ++T+ ++ ++      L +    I  +   +  +    K   T +  +HV  
Sbjct: 4   LHIYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADERNGKKGFTFEFDIHVAK 63

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G +  + + +D+YAAID  + +  + L ++ DK+K H
Sbjct: 64  KGNVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNH 101


>UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
           tauri RepID=Q00W70_OSTTA
          Length = 184

 Score = 72.3 bits (177), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDA 52
           ++ + G ++EIT A+ E+V +K  +   + D   I +V V             V H ++ 
Sbjct: 51  KMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTEV 110

Query: 53  TL-HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           T+    G  +HA   G+++YA ID   D + R + KHK+K 
Sbjct: 111 TVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKH 151


>UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2
          Tax=Flavobacteriales RepID=A8UI75_9FLAO
          Length = 101

 Score = 72.3 bits (177), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++N    N      L +F+  +  KL+ ++D+I Q  V LKVE    K     +A + V
Sbjct: 1  MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVENTSDKENKIFEAKVSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G       + +      D  I  L RQ+ K K+KL+ 
Sbjct: 61 PGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLRS 98


>UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella burnetii
           RepID=A9KBC8_COXBN
          Length = 183

 Score = 72.3 bits (177), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52
           MQ+   IT  N++ T A+ + +  K  KL QY D+I   ++V+++ K             
Sbjct: 6   MQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRI 65

Query: 53  TLHVNGGEIHAS-AEGQDMYAAIDGLID----KLARQLTKHKDKLKQH 95
            L + G E   +  E +D+Y AI    D    K+  ++      +K H
Sbjct: 66  NLTLPGKEFAVNRNEVEDLYVAIRDAFDDMARKVEEEMRMRMGHVKTH 113


>UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magnetospirillum
           RepID=Q2VZ29_MAGSA
          Length = 158

 Score = 71.9 bits (176), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 18/111 (16%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----------LKVEKVTH 48
           MQ+   IT + V+ ++A+   +  K AKLE  FDRI    VV          L  +    
Sbjct: 39  MQIPLQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVIEQHHKNTSNLHHKGEPF 98

Query: 49  TSDATLHVNGGEIHAS------AEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                L V G E+            +D+Y A+      + RQL ++ D+ +
Sbjct: 99  HIRLALTVPGDELVVKRDPKDSHVNEDIYVALREAFAGMERQLKEYVDRSR 149


>UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavobacteriales
          bacterium HTCC2170 RepID=A4AQL9_9FLAO
          Length = 99

 Score = 71.9 bits (176), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M ++I    +  +EA+ E ++AK  +L   +D I +  V  K E          +  L  
Sbjct: 1  MTIDIQYVQMPTSEAMNELLSAKLDRLATKYDWIIRAQVHFKQENDPTGKGKICEMELSA 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G  I A +   D   A    I  L +QL+K K  + + 
Sbjct: 61 PGPRIFAQSNEDDFEKAAAKTIKDLEKQLSKRKAIMNKR 99


>UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium
          spinosum DSM 4136 RepID=UPI000174494B
          Length = 115

 Score = 71.5 bits (175), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
          MQ++I+  N+++T A+ ++   +   +E     I   +VVL  +     K      A L 
Sbjct: 1  MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          V G +IHA     D+YAA+D     LARQL K K  L  
Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTALVD 98


>UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Actinobacteridae
          RepID=D2RAS6_GARVA
          Length = 223

 Score = 71.5 bits (175), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M++ ITG + +I +  R+ V +K  ++        +V +VL  E            + T+
Sbjct: 1  MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPRQADTAKRVEITV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLID 79
                I A A   D ++A+D  +D
Sbjct: 61 VAGSTVIRAEASSTDQFSALDMALD 85


>UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis
          group RepID=Q3YS76_EHRCJ
          Length = 197

 Score = 71.1 bits (174), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYF--DRINQVYVVLKVEKVTHTSDATLH-V 56
          M + IT    ++T+ ++ +V       + ++F  D    V V L  +     S  ++  +
Sbjct: 1  MNIIITARGFDVTDNIKTYVERSVQDYITKFFADDSTVSVKVTLSKDANLFNSTISISDI 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
              I  S      Y AID  ID L  +L KHK 
Sbjct: 61 KSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKT 94


>UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S30EA n=6
          Tax=Bifidobacterium RepID=B8DT99_BIFA0
          Length = 228

 Score = 70.7 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M + +TG +++I +  R+ V +K  ++        +V VVL  E            + T+
Sbjct: 1  MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRLHDTAVRVELTV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
                + A A   D  +A+D  +DKL
Sbjct: 61 VAGSTVVRAEASSLDEVSALDLALDKL 87


>UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms
           RepID=A1SY46_PSYIN
          Length = 189

 Score = 70.3 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           L IT  ++  ++A+   +  K AKL++++D I   +VV++       +         L +
Sbjct: 5   LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95
             GE+            +D Y AI      + RQ    + K + K+K H
Sbjct: 65  PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTH 113


>UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH
          Length = 122

 Score = 70.3 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59
          M + IT    E+ + L + +   F K +++        V +K+E       +     + G
Sbjct: 1  MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +I +  E  ++  A +   D+L RQL KHK+K   H
Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAH 96


>UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa
          RepID=D2NS77_9MICC
          Length = 213

 Score = 70.3 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHVN 57
          ++NI G N+++TE L E+V  K  K  Q  D +  + V    +      +   + T+   
Sbjct: 4  EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHLGGESIRVEITVVGT 63

Query: 58 GGEIHASAEGQDMYAAIDGLIDK 80
          G  + + A+G D +A  D    K
Sbjct: 64 GPVLRSEAQGHDKFAVFDETYGK 86


>UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Campylobacterales RepID=C3XP50_9HELI
          Length = 186

 Score = 70.3 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------------KVTH 48
           MQ  IT  + E+T+A+++++ +    LE+Y   I    V++  +            K T 
Sbjct: 1   MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQEKKGSKKGEKKKKRTF 60

Query: 49  TSDATLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             D TL +     +  +   +D YAA+D  I ++ + L ++ DK  +
Sbjct: 61  GIDITLSLAHSNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNK 107


>UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus
           lucimarinus CCE9901 RepID=A4SAX9_OSTLU
          Length = 132

 Score = 70.0 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 5   ITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDATL- 54
           + G ++EIT A+ E+  AK  K   + D   I +V V               H ++ T+ 
Sbjct: 3   VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              G  +HA   G+++YA ID   D + R + KHK+K  
Sbjct: 63  MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHS 101


>UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT
          Length = 155

 Score = 70.0 bits (171), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55
           +L ++G ++E+T +L+ FV  K  +L ++ +RI ++ + L+ +           +   + 
Sbjct: 38  ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95
           +NG   +AS    + + A++ L++KL R + +     K+++H
Sbjct: 98  INGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRFFKVQRH 139


>UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=5
          Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1
          Length = 179

 Score = 69.6 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M++ IT  N  +    R ++  K  ++ +   +I++  + L  E+           ATL+
Sbjct: 1  MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRSQADHFILKATLN 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
               ++A    +++  A D  ++ L +Q+   K K++
Sbjct: 61 TGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKME 98


>UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lutiella
          nitroferrum 2002 RepID=B9Z3V7_9NEIS
          Length = 181

 Score = 69.2 bits (169), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
          L I   N+  +EAL   +  K  KLEQ+F R+    V +        +   +     +  
Sbjct: 5  LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVGLPHRHSNQGEHYFVQIDMTA 64

Query: 57 NGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKH 88
           G E+ ++    +D+Y A+    D   R L  H
Sbjct: 65 PGTEVVSNRQNHEDVYVALRDAFDAARRMLEDH 97


>UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum 'So ce 56'
           RepID=A9G3G6_SORC5
          Length = 191

 Score = 69.2 bits (169), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATL 54
           MQ+ +T  ++  + +L E +  +  K+E++ D IN   VV++ +         +     L
Sbjct: 1   MQVELTFRHIGKSPSLEELIREQANKIERFNDHINSCAVVVERDHASMGTGGEYRVRVDL 60

Query: 55  HVNG-GEIHASAEGQD--MYAAIDGLIDKLARQLTKHKDKLKQ 94
           HV G  EI +        + AA+  +  +  RQL K  D+ + 
Sbjct: 61  HVAGKHEIVSEERAARNLLPAAVRDVFQRAGRQLKKLADEHRS 103


>UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella
           blandensis MED217 RepID=A3XP15_9FLAO
          Length = 120

 Score = 69.2 bits (169), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M  N   ++V  + AL +F   +  KL   +D I +  V  K E          +   L 
Sbjct: 20  MNYNFEYHDVAASAALEDFTKEQLDKLVNKYDFIVRADVFFKTENTSSDETGKIAGIRLS 79

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + A    +  + ++     +L  QL K KDK+K H
Sbjct: 80  APGPRLFADHSSKSFHESVKEATRELNIQLKKRKDKMKSH 119


>UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula
          baltica RepID=Q7UMU4_RHOBA
          Length = 113

 Score = 68.4 bits (167), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-TSDATLHVNGG 59
          MQ+N++  +  +    +  V  K  KL + +DR+N + V + +E +     +  + V   
Sbjct: 1  MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60

Query: 60 E-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + + A AE   + AA+D  I K  +QL K K+K  +H
Sbjct: 61 DDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEH 97


>UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP
          Length = 126

 Score = 68.4 bits (167), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLHV 56
           ++ ++G ++E+T +L+ FV  K  +L ++ +RI +V V L+ +          +   + +
Sbjct: 8   EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEI 67

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95
           +G +++A  +  + + AI  LIDKL R L+K     K+++H
Sbjct: 68  HGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRH 108


>UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium
          MS024-2A RepID=C0BJ85_9BACT
          Length = 99

 Score = 68.4 bits (167), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
           ++    N      L+EF   +  KL  ++++I +++   KVE  +      ++  + + 
Sbjct: 3  NVHFRAVNYTADVTLKEFAQQRLGKLTTFYNQIIEMHCFTKVENTSDKINKWAELKIEIP 62

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          G  +      +    AID   D   R L + K+K+K
Sbjct: 63 GENVVVKKMCKTFEEAIDSAADSAERILKRRKEKIK 98


>UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Blastopirellula
          marina DSM 3645 RepID=A3ZLA7_9PLAN
          Length = 104

 Score = 68.4 bits (167), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 17 REFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHVNGGE-IHASAEGQDMYAAI 74
          +E ++ K  KL + F+RI  V V + +E       +  +     +   A+     +  A+
Sbjct: 6  QETISEKVQKLTRLFERITSVDVTVDLEHNDKPGVELRVTAERTDDFVAADSCSSLLGAL 65

Query: 75 DGLIDKLARQLTKHKDKLKQH 95
          D  I K+ +QL KHK++LK H
Sbjct: 66 DNSIHKMEQQLRKHKERLKDH 86


>UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Marinomonas RepID=A6VX39_MARMS
          Length = 130

 Score = 68.0 bits (166), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH---TSDATLHVNG 58
            LNI+G++V+  E ++E V  K   L +  ++I  + V L  EK        +A++H+ G
Sbjct: 3   TLNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPG 62

Query: 59  GEIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKLKQH 95
            ++ A  + +  +  A+D L+ KL +QL KHK K    
Sbjct: 63  HDLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAKHAGR 100


>UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Campylobacterales RepID=Q30TL0_SULDN
          Length = 109

 Score = 68.0 bits (166), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + +   ++ ++   +  +    A  ++Y   I  V V LK EK     +  +H+   E
Sbjct: 1  MNVQVHAKDITLSANAKGHIETAIAAFKKYSLDITTVNVNLKKEKKGVLVEFDIHIAHSE 60

Query: 61 -IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  +   +D+  AID  ID+ ++ L +  D++  H
Sbjct: 61 PVVINQADEDLDTAIDLAIDRASKALRRLHDRVVSH 96


>UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylobacterium
           chloromethanicum CM4 RepID=B7L313_METC4
          Length = 216

 Score = 67.6 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
           + +  +++ +  ALRE   A   ++  +YF R+N   V    +   +     + +    I
Sbjct: 10  IVVRSSSIGLGAALRERARAGVERVAAKYFGRLNAATVYFSRDGWGYRCTVNIDMGALRI 69

Query: 62  H-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               + G   +A  D  + K A+QL + K  L+ 
Sbjct: 70  VTGESLGFCCHAVFDAAMRKAAKQLRRLKRALRD 103


>UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT
          Length = 126

 Score = 67.6 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           +L + G ++ +T+A++  +     +L ++  RI+++ + +++++         +   + +
Sbjct: 12  KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRVHSGPQMFNAKGIIEL 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G ++ AS   +D Y ++  LI+KL R + K    LK  
Sbjct: 72  RGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALKGR 110


>UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium
           ATCC 35110 RepID=B3QW75_CHLT3
          Length = 109

 Score = 67.6 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH----TSDATLHVN 57
            +  T  +      +  +         +Y+  I   +++L  +K        ++   HV 
Sbjct: 12  NVQFTLRHSSNHRDIEAYAKDAIKAFHKYYTDILDCHIILDHQKNDKEQNKIAEIKAHVP 71

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
                +  +G     AID  +  + +QL KH+DK
Sbjct: 72  SHTFVSKEQGPTYEVAIDTCVSNICKQLKKHRDK 105


>UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE
          Length = 117

 Score = 67.3 bits (164), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M++ + G N  +T+A RE +  +F K+ +    + Q+ V L  ++         ++ATL+
Sbjct: 1  MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPSIPEAQVAEATLY 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88
          + G  + A AE  DM  AI+   ++L +Q+ +H
Sbjct: 61 LKGVTLRARAEAGDMGHAINLCEEQLFKQVKRH 93


>UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Acidimicrobium ferrooxidans DSM 10331
           RepID=C7M130_ACIFD
          Length = 182

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M +++      +TE  R  V  + A+LE+Y     +V V ++            ++ T  
Sbjct: 1   MAVDLRCRGCTLTEQQRAHVEDRIARLEKYLGAPERVEVHVERAGNPANPDRVVTEVTYV 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V+   + A   G+    + D   ++L R+L + K +L   
Sbjct: 61  VSKAVVRARGVGETELESFDRAEERLKRRLERLKGRLVAR 100


>UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5
          RepID=B3RGS8_9CAUD
          Length = 105

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59
          MQ+ ITG NVEITE +  F++ K +KLE+     N   V +KVE       A +  N G 
Sbjct: 1  MQIEITG-NVEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNSGK 59

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK 87
          E+ A A+G D Y A D ++D  ARQL K
Sbjct: 60 EVIAKAKGSDAYEATDRMVDVAARQLAK 87


>UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii
           DJ RepID=C1DL86_AZOVD
          Length = 189

 Score = 66.5 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           + I  + +E + A+   +  +  +LE++++RI    V        H           L +
Sbjct: 5   VQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHQGRLYQVKVHLTL 64

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQL----TKHKDKLKQH 95
             G+IH+          +D Y AI      + RQL     K + ++K H
Sbjct: 65  PDGDIHSSQAHHDEHAHEDPYVAIRDSFRAVRRQLEDYARKRRAEVKSH 113


>UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplasma marginale
          RepID=B9KIL8_ANAMF
          Length = 104

 Score = 66.5 bits (162), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVN 57
          M + IT    + T +++ +V    +  L +Y        V VV+  E    T+  ++H +
Sbjct: 1  MNVIITCRGYKATASIKSYVEDSISSHLGKYLHDSPQINVRVVMAKEAHMFTACVSIHED 60

Query: 58 GGEIH-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            E   AS   + +Y A+D  +  +A  L K+K++   
Sbjct: 61 HHEFVNASKSAETVYKAVDAAVTHVANGLRKYKEEKTD 98


>UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=pseudomallei group
           RepID=Q2SWQ3_BURTA
          Length = 212

 Score = 65.7 bits (160), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52
           M+L   ++   +  + AL + V    AKLE+Y   I +  V +      K +        
Sbjct: 104 MKLPLEVSIQGMPRSAALEDAVARHAAKLERYCADIIRCRVSVILDDKHKHQGKPFGVHI 163

Query: 53  TLHVNGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + + G EI ++    +D+Y A+        R L     K +  
Sbjct: 164 DVTIPGHEIVSNRESDEDVYVALRDAFSNAERMLDDAVGKRRDR 207


>UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri
           RepID=Q14ME0_SPICI
          Length = 125

 Score = 65.7 bits (160), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQY----FDRINQVYVVLKVEKV-THTSDATLH 55
           M+  I   N+ IT+A+ + +   F KL +Y     + +  V +    E      +   + 
Sbjct: 1   MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTAIDIR 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                + A     D Y A+D  + K+  QL K K K +  
Sbjct: 61  GRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDR 100


>UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntrophobacterales
           RepID=A0LQL3_SYNFM
          Length = 176

 Score = 65.7 bits (160), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           L I+ +NV I++A  E +  K  KL++  D++    V +++   +            L V
Sbjct: 5   LEISAHNVHISDATEELIREKAEKLDRINDKLIGCRVRVEIPHRSQRSGILYSVRIELAV 64

Query: 57  NGGEIHASAE-GQDMYAAIDGLIDKLARQLTKHKDKLK 93
            G +I    E  +D++AAI G  +   R+L +  +K +
Sbjct: 65  PGRDIVIKREPDEDLHAAIVGSFETAQRRLKEVAEKQR 102


>UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S30EA n=10
          Tax=Sphingomonadales RepID=C8WD98_ZYMMN
          Length = 200

 Score = 65.3 bits (159), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHT-SDATLHV-N 57
          M + I+G+ ++   ALRE+V    +++  +YF +     V     +      D  +H   
Sbjct: 1  MDIRISGHQIDTGAALREYVNDHLSQIVSKYFPKCLSASVTFGNRRHAIISCDIIIHAMR 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + AS   +D +AA D    K+ +QL +H  +L+  
Sbjct: 61 DIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQTR 98


>UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa
          HTCC2155 RepID=A6DIV0_9BACT
          Length = 115

 Score = 65.3 bits (159), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ +   + ++ + ++  +  +  K +    ++    V+L         +  +      
Sbjct: 1  MEIIVASRHFKVQKDVKTQIVEEMKKFDTCASKLTTAEVILNNIHHNIHVEIIIRGKHLN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + AE  D+  +      K+  QL K + K+K H
Sbjct: 61 CKSEAETDDLLKSFYLAFKKMRNQLDKRRTKVKNH 95


>UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae
           bacterium DG1235 RepID=B5JNT4_9BACT
          Length = 126

 Score = 65.3 bits (159), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55
            + I G ++E+TE+L+  V     KL ++   I ++ V L++E      +    +   + 
Sbjct: 6   NVEIVGRHLELTESLKAKVNEVVEKLYEHDSGITRIRVELEMELHSKTHQNEFIAKGHVV 65

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                  ASA G D+Y AI  L +KL R L ++K + +
Sbjct: 66  DRHDHFDASALGDDLYQAIGSLAEKLDR-LIRNKSRRR 102


>UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RTG4_9PROT
          Length = 128

 Score = 65.3 bits (159), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           MQ+ I     +++  LRE V  +    L+     ++++ V L                 +
Sbjct: 1   MQIVIQARGFDLSAGLREHVERRLHFALDWAQYHVSRIVVSLSDINGPRGGEDKRCQIRV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + G  E+       D+Y AID  +D++ R L++   + ++H
Sbjct: 61  AMAGAPEVAIDDIESDLYLAIDRAVDRVGRTLSRRLARQREH 102


>UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax=Anaplasma centrale
           str. Israel RepID=D1AUL6_ANACI
          Length = 197

 Score = 64.9 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKF-AKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57
           M + I     + T +++ +V     + + +Y          VV+  E    T+  ++  +
Sbjct: 1   MNIIIACRGYKATASIKSYVENSIISHVGKYLRDSPEINARVVMAKEAHMLTACVSICED 60

Query: 58  GGEIH-ASAEGQDMYAAIDGLIDKLARQLTKHK-DKLKQH 95
             E   AS     +Y A+D  +  +A +L K+K +K+ +H
Sbjct: 61  HHEFVKASKSADTVYKAVDDAVAHIASKLRKYKGEKIDRH 100


>UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Orientia
           tsutsugamushi RepID=B3CQ21_ORITI
          Length = 116

 Score = 64.9 bits (158), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 1   MQLNITG--NNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVE-KVTHTSDATLH- 55
           M + I+G      +   L ++V  K   +  +YFD +    V    E          ++ 
Sbjct: 1   MNIIISGSPQYNSVKFNLNQYVNRKIINVANKYFDNLKAPNVHFSKEEHNQFKCHIVVNP 60

Query: 56  --VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                  I+++    D++A+ D    KL +QL ++K KLK 
Sbjct: 61  ITKQHRIINSTGYSNDVFASFDLARVKLEQQLRRYKSKLKD 101


>UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297
           RepID=A4BJM4_9GAMM
          Length = 115

 Score = 64.2 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           MQ+ I   N+++T +LR++V  + +  L     +I +V V+L                 +
Sbjct: 1   MQIEIRSKNIDMTPSLRDYVRRRLSFALGARAGQIQRVQVMLSDINGPKGGNDKHCRILV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +V    ++       ++  AID    + +R LTK   KL++
Sbjct: 61  NVPYIKDVVIEDCQTELKGAIDRAAARTSRTLTKRLMKLQK 101


>UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae
           RepID=Q1D1Y2_MYXXD
          Length = 119

 Score = 64.2 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRI-NQVYVVL-----KVEKVTHTSDAT 53
           M++ + G ++ +++AL+ +V     + +E++ D    ++ + L         +      T
Sbjct: 1   MKVLLRGVHLNLSDALKSYVDEHLVRHIERFADDEAAEIDISLVDTNGPKGGMDKECRVT 60

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           + + G   +H +     ++ AID   D+L   L +   K + 
Sbjct: 61  VRLPGLSSVHVTETADSLFPAIDASRDRLETSLKRMLGKRRD 102


>UniRef50_Q11G12 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Chelativorans sp. BNC1 RepID=Q11G12_MESSB
          Length = 109

 Score = 63.8 bits (155), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHVN 57
            +T  N+E ++A+   V  +  ++E+ FDR+    VV+      K+          L + 
Sbjct: 6   KVTFRNMERSDAIEGHVMRRVEEVEKCFDRVIGCDVVIEAAQKRKLSGRAFKVHVALQIP 65

Query: 58  GGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G ++        S   +++  AI        R+L   KD++  H
Sbjct: 66  GPDVVVTRLVARSKAAENVNLAIHEAFSAATRRLLARKDQMTGH 109


>UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Methylobacterium RepID=B1Z8J5_METPB
          Length = 163

 Score = 63.4 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59
            + +  +NV++   L ++  A   ++  +Y   +N   V    E   +     L +    
Sbjct: 9   NILVQSSNVDLGSVLPDYARAGIMQVASKYIGNLNIAAVHFNREGGGYRCTVNLQMGALP 68

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +   A+ ++ YAA    ++K+A+QL + K +L++
Sbjct: 69  MMSGEADHRNAYAAFRRALEKVAKQLRRAKRELRE 103


>UniRef50_A5IBA4 Sigma 54 modulation protein YhbH n=4 Tax=Legionella pneumophila
           RepID=A5IBA4_LEGPC
          Length = 190

 Score = 63.0 bits (153), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHV 56
           + +T  N++ ++A+         KL+  +D+I    VV++     H           L V
Sbjct: 5   IQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRIDLTV 64

Query: 57  NGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              E+  S E       +D+Y ++    + + RQL  + ++ + H
Sbjct: 65  PDAELVVSRESSNKHAHEDVYVSLRDAFNAIERQLKNYANQRRGH 109


>UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM
          74 RepID=D2QEF9_9SPHI
          Length = 121

 Score = 63.0 bits (153), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 5  ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK------VTHTSDATLHVNG 58
          +        ++L +F+ AK  KL+ + DRI    V L++E            +  L + G
Sbjct: 1  MHAVKFTADQSLLDFIQAKLDKLDTFHDRIISGEVFLRLEGADSNKVKEKIVEVRLLLPG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           E+      +   +A D ++D L  +L + K K   
Sbjct: 61 KELFVKEHDKSFESATDRVMDVLKDKLVRFKQKRND 96


>UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhizobiales
          RepID=A9CX73_9RHIZ
          Length = 181

 Score = 62.6 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 10 VEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GGEIHASAEG 67
          +EI E+ R  +    +  + +YFD     +V ++       +D  +H++ G  +HA+ E 
Sbjct: 1  MEIGESFRTRIDDHVSGAVRKYFDGGFSSHVTVEKSGSRFQADCKIHLDTGVVLHATGEA 60

Query: 68 QDMYAAIDGLIDKLA 82
          QD   A D   +++ 
Sbjct: 61 QDPQPAFDAAAERIE 75


>UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Acidiphilium cryptum
           JF-5 RepID=A5G2U9_ACICJ
          Length = 186

 Score = 62.6 bits (152), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHV 56
           L IT  +++ + AL   +  K   L ++  RI + +V+++     H       +   + V
Sbjct: 5   LQITFKDIDRSPALEARIREKAEALSRFEARILRCHVIIEAPHRHHHKGKLYRARIEIAV 64

Query: 57  NGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             G+I  + E       +D Y A+    D   R+L  H  +L  
Sbjct: 65  PRGDIVINRESPENHAHEDPYVAVRDAFDAAVRKLEDHARRLDD 108


>UniRef50_A0LCJ5 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Magnetococcus sp. MC-1 RepID=A0LCJ5_MAGSM
          Length = 103

 Score = 61.9 bits (150), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE--KVTHTSDAT--LHV 56
          M+L + G  ++I   LR+ +T +   L+Q F  I    V ++ +       ++    ++V
Sbjct: 1  MELKLEGRQMDIGNELRDRITTRLQTLDQRFGPITHARVSIERKSHNNEQRAEVKTVINV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  I ++ E   +  A++  +D L  +L    +K K+
Sbjct: 61 PGNTISSTKEAATVIPAVNEALDTLTMELQTWAEKNKK 98


>UniRef50_B4UF98 Cold-shock DNA-binding domain protein n=4 Tax=Anaeromyxobacter
           RepID=B4UF98_ANASK
          Length = 195

 Score = 61.9 bits (150), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-------TSDATLH 55
           L +   +VE +E L E V     +LE++  RI    V L+     H            L 
Sbjct: 5   LQLAWIHVEPSEPLAERVREAVRRLERFHGRITGCTVALEAPSRHHRNTGAQYRVRIELR 64

Query: 56  VNGGEIHA------SAEGQDMYAAIDGLIDKLARQL----TKHKDKLKQH 95
             GG          S +  D+Y A++     + RQL     +   ++K H
Sbjct: 65  FPGGRAVVGRAPPRSRDRADLYTAVNAAFRDVRRQLEDRQRRMDGRVKAH 114


>UniRef50_A4CQ98 Sigma-54 modulation protein n=1 Tax=Robiginitalea biformata
          HTCC2501 RepID=A4CQ98_9FLAO
          Length = 89

 Score = 61.5 bits (149), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 18 EFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHVNGGEIHASAEGQDMYAA 73
          EF   +  KLEQ++DR+ +  V LKVE    K    ++  + V         + +    A
Sbjct: 2  EFTQRRLDKLEQFYDRVIRAEVFLKVENISEKENKVAEIKMQVPKDTFVVKKQCKSFEEA 61

Query: 74 IDGLIDKLARQLTKHKDKLKQH 95
          +D     L R+L K K K + +
Sbjct: 62 VDSACSSLERKLVKKKRKPRAY 83


>UniRef50_B8HME4 Cold-shock DNA-binding domain protein n=8 Tax=Cyanobacteria
           RepID=B8HME4_CYAP4
          Length = 207

 Score = 59.9 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 21/116 (18%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDA 52
           M++   IT  +V    A+   V  K  KLE+  D I+  ++ ++           +    
Sbjct: 1   MKVPPEITYRDVPKNAAIESLVQEKITKLERVCDHISSCHIAIEKIHDRPRRGSPYRVRL 60

Query: 53  TLHV-NGGEIHASAE--GQDMYAAID----GLIDKLARQLT------KHKDKLKQH 95
            + V    E+ A +    ++ Y  +D        K  RQL       +  D++  H
Sbjct: 61  DITVPPSHELVAESNPGEENQYVELDTVIRDAFQKAERQLRELSRQQRQSDRIASH 116


>UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Opitutus terrae PB90-1 RepID=B1ZU16_OPITP
          Length = 131

 Score = 59.6 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57
          +L I G  + +T+ALR  +  K  +L ++  RI +V V L  E         +   + ++
Sbjct: 12 KLVIRGIRLWLTDALRSTIETKAERLFRHEPRIIRVRVDLDREHRNGVALFVAKGRIELH 71

Query: 58 GGEIHASAEGQDMYAAIDGLI 78
          G ++ AS    D Y +ID LI
Sbjct: 72 GPDLLASVVSNDAYKSIDWLI 92


>UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 Tax=Clostridium difficile
          QCD-32g58 RepID=UPI00006DCB56
          Length = 57

 Score = 59.2 bits (143), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 30/49 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT 49
          MQ+ ++G  +++T+ ++ +V  K ++LE+Y D  ++V V +  +K    
Sbjct: 1  MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQK 49


>UniRef50_UPI00016C56FB hypothetical protein GobsU_19047 n=1 Tax=Gemmata obscuriglobus
          UQM 2246 RepID=UPI00016C56FB
          Length = 112

 Score = 59.2 bits (143), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVN 57
          MQ+ ++  + ++ + +++ +  K  KL  +F R+  + + + + +      + +      
Sbjct: 1  MQVTVSVRHGQLGDDIQQQLKEKGEKLLHFFSRLTMIEITVDLHRTHDGNMSVEVRATAE 60

Query: 58 G-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             E   S   +D+ AA +     + +Q+T +K+K++ H
Sbjct: 61 HKHEFVGSDHAEDVLAAFNKAAAHVKQQVTHYKEKIQDH 99


>UniRef50_A6CY25 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
          RepID=A6CY25_9VIBR
          Length = 105

 Score = 58.8 bits (142), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRIN--QVYVVLKVEKVTHTSDATLHVNGGE 60
          + IT  +V+IT +++  +  KFA ++ +F  I+  + +++          + T+H++  +
Sbjct: 1  MQITSMHVDITPSMKTLIEEKFAHIQGHFHSIDQEKCHIIYHESYRLFEVEFTVHLDHEQ 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                      A+      +   L KHK KL 
Sbjct: 61 FFTKKSNATFAIALQEATQAVLHSLEKHKTKLS 93


>UniRef50_D2MK58 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria
           sp. WGA-A3 RepID=D2MK58_9BACT
          Length = 110

 Score = 57.6 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHV 56
           M L I   NV +T   ++ +  +   L+  +D I    + L            ++A + +
Sbjct: 1   MDLKIDSRNVGMTPRWKQEIQDRVTTLQTEYDNITHARITLTKNPHHKKGDNNAEALIVL 60

Query: 57  ---NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                  + A  E +    AI         ++ K ++K   +
Sbjct: 61  NLPPRHTVTARKEAKSFEEAIRSAFKAAMTEVKKFREKPNSY 102


>UniRef50_Q1IU45 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis
           Ellin345 RepID=Q1IU45_ACIBL
          Length = 348

 Score = 56.9 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQ----YFDRINQVY--VVLKVEKVTHTSDATL 54
           M ++I+   +E T  +   V     KLE+    +   +  ++  V+ K  +        L
Sbjct: 1   MNVHISYKGLEKTPDVESTVKLHLKKLERRLQVFRPELVSLHGSVLQKSPRAGFVVALNL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +   +I A     +   A+    D L  Q+++HK  L+ 
Sbjct: 61  KLPTTDIAAEQANPNSAVAVKAAFDSLIGQISRHKGALRN 100


>UniRef50_Q1D2Z7 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1D2Z7_MYXXD
          Length = 121

 Score = 56.9 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ I   N+ +TE LR +   +    L++  DR+ +V V L+        V       L
Sbjct: 1   MRVEIRARNIPLTETLRTYAERRVRFALDRLSDRVKEVVVRLEDANGPKGGVDQVCRVAL 60

Query: 55  HV-NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + +G E+   +   ++ AAID  +++ +  +T+   + ++
Sbjct: 61  RLEHGRELAIESSDTNLLAAIDRTLERASNAVTRAVGRAQR 101


>UniRef50_D2QHG3 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74
           RepID=D2QHG3_9SPHI
          Length = 113

 Score = 56.5 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVE----KVTHTSDATLHV 56
           +L+I   N+ + +A R+ +     KL +Y+   +    V L+VE        +      V
Sbjct: 11  RLSINAVNITVDDAFRDRIAQALVKLRRYYSGDLITAEVFLRVEAHGGPNDKSLRIVYGV 70

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87
            G    A  EG +    +  +  KL  QL +
Sbjct: 71  PGTGAFAEEEGDNWDTMLHTVTGKLKHQLER 101


>UniRef50_Q2IHD0 Putative sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Anaeromyxobacter RepID=Q2IHD0_ANADE
          Length = 167

 Score = 56.5 bits (136), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDR-INQVYVVL-----KVEKVTHTSDAT 53
           M+L I  +++ +   L  F+     + L +  D   +++ V L     K   V      +
Sbjct: 34  MKLVIHSHHLTLPPDLGAFLRKHVTRPLARLQDDSASELSVHLGDARRKKGGVDQECRLS 93

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + G   +H  +   D++ A+    ++L R + +  +K++  
Sbjct: 94  FRMPGARTLHVESVQDDLHTALLDAAERLKRLVKRELEKMRSR 136


>UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp.
          128-5-R1-1 RepID=A8V5D5_9AQUI
          Length = 158

 Score = 56.5 bits (136), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 32 DRINQVYVVLKVEKVTHT--SDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLT 86
          +    V V    EK  H    D  ++ N   GG IHA  E  D+Y AID ++D++ RQL 
Sbjct: 8  EDSVNVRVTYDFEKHRHRNRVDIDIYFNTPGGGVIHAWEESNDLYTAIDFVVDEVERQLV 67

Query: 87 KHKDKL 92
          + K + 
Sbjct: 68 RLKARR 73


>UniRef50_A5ETX8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Bradyrhizobium sp. BTAi1 RepID=A5ETX8_BRASB
          Length = 307

 Score = 56.1 bits (135), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLHVN 57
           NI   N+     LRE + +K   LEQ+  R     V L +E      K  H +  TL + 
Sbjct: 15  NIVTRNLHGHPFLREKLYSKIRALEQHLQRFPPDAVHLLIELDRHARKEEHRAVLTLRLP 74

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              +HA    +    A+   +  L ++L   K+K+++
Sbjct: 75  SHILHADKSAKSAITALTHAVKALLQELKALKEKMRE 111


>UniRef50_Q2RYB7 Ribosomal subunit interface protein, putative n=1
           Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB7_RHORT
          Length = 126

 Score = 55.7 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----------VEKVTH 48
           MQ+   I    ++ ++A+ E +  K AKLEQ+   I    VV++                
Sbjct: 1   MQIPVQIVFRGIDHSDAVEERIREKAAKLEQFHKNITACRVVVEMHHKNTSHVHKRGEPF 60

Query: 49  TSDATLHVNGGEIHASAE---------GQDMYAAIDGLIDKLARQLTKHKDKLK 93
                + V G +++A +           +D+  A+    + + RQL    ++ +
Sbjct: 61  LISVQVSVPGEDLNAVSSHGKDADLKAHEDVGIALRDAFESMERQLRDIAERKR 114


>UniRef50_D0MIH4 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Rhodothermus marinus DSM 4252 RepID=D0MIH4_RHOM4
          Length = 109

 Score = 55.7 bits (134), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL-----KVEKVTHTSDATLHVN 57
                 N E+T+AL+  V  +  KL +    I  V V +           + +   ++  
Sbjct: 8   FEYYSENHELTDALKAKVEQRIQKLAKKHHDITGVSVAIQRVEHTHTPHAYRARVVVYHK 67

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              + A+     +  ++   +D + RQ+ + + KL++
Sbjct: 68  PENVVATEVAPTVEESLLRALDSVERQVREQRRKLRE 104


>UniRef50_A6W1F5 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Marinomonas sp. MWYL1 RepID=A6W1F5_MARMS
          Length = 137

 Score = 54.9 bits (132), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ +    + +T++L+ +V  + +  L   +D I QV V L                 +
Sbjct: 1   MRIKVKARRLALTKSLKAYVKRRLSFALNSRYDNIQQVIVTLTDVNGPKGGEDKHCQVLV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +NG  E+  S +  DMY+AID    + +R +T+  ++L+
Sbjct: 61  KINGQKEVVISEQQADMYSAIDSAAGRTSRTVTRRIERLQ 100


>UniRef50_B4WI97 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WI97_9SYNE
          Length = 142

 Score = 54.5 bits (131), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDA 52
           M++   I+   V  TEAL   V  K AKLE+++  I+  ++ ++           +    
Sbjct: 1   MRVPPEISYRGVNKTEALETLVAEKIAKLEKFYREISSCHLAIEKVHDHPNSGSPYRVRL 60

Query: 53  TLHVNGGEIHASAEGQD-------MYAAIDGLIDKLARQLTKHKDKLKQH 95
            + V         +  D       + A I    D   RQL +  ++   H
Sbjct: 61  DITVPEDREVVVDKSPDKGVQYQPLEAIIRDTFDIANRQLKELNEQQHNH 110


>UniRef50_B4D6Y7 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y7_9BACT
          Length = 372

 Score = 54.5 bits (131), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYF----DRINQVYVVLKV--EKVTHTSDATLHVN 57
           +I   ++     +RE +  K A L Q           + VVL    +K  +    TL + 
Sbjct: 13  HIVNRHLHPGVTVREKLAEKIAALSQLLVHFPPDSIHLQVVLDKMAKKGLYEVRLTLRLP 72

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              +HA   G D+   I+  ++ L R++   K  L+
Sbjct: 73  SNILHAEKTGTDLLVTINTAVNALKREVMSLKADLR 108


>UniRef50_C3RQU3 Predicted protein n=1 Tax=Mollicutes bacterium D7
           RepID=C3RQU3_9MOLU
          Length = 163

 Score = 54.2 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT--LHVNG 58
           M ++I    + +TEA+ E++  +F KL +Y   ++   V + V+           +    
Sbjct: 44  MDISIRCK-ITMTEAMNEYLMNRFKKLNRY-KVLDNSRVSILVKPHEAAVKIQTLISNKY 101

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G    +    D Y A+D  IDK+  +L K K+
Sbjct: 102 GNFKVTTMASDYYTAVDLHIDKVKNKLCKIKE 133


>UniRef50_Q21KB8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Gammaproteobacteria RepID=Q21KB8_SACD2
          Length = 105

 Score = 54.2 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 5   ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHVNG 58
           +   +++ + AL + +  K  KL +Y D I    VVL      K +   + +   + + G
Sbjct: 7   VVYRDLDTSPALNDVIYKKMEKLHRYSDSIIHSKVVLDSPHNQKHKGKLYRASIEIGLKG 66

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             +  S +  +++ A+        R++ +   K +
Sbjct: 67  HPLTVSQDAPNVHIAVRDAFAAAERKIKEDNSKRR 101


>UniRef50_C5CAR2 Ribosomal subunit interface protein n=1 Tax=Micrococcus luteus
          NCTC 2665 RepID=C5CAR2_MICLC
          Length = 225

 Score = 53.8 bits (129), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M ++    N+ ++E+ R+ V  +  +L++  +  + + V +               + T+
Sbjct: 3  MDVSYIARNISLSESFRDHVVERTERLQRLAEGADTLEVRVTKVSHRKHSDEAVRVELTV 62

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
                + A A   D  AA D    +L
Sbjct: 63 RGPRDVVRAEAAADDELAAFDKAAARL 89


>UniRef50_Q73N60 Ribosomal subunit interface protein, putative n=2 Tax=Treponema
          RepID=Q73N60_TREDE
          Length = 96

 Score = 53.4 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59
          M +NI      + E  ++++  KF ++E   + I  +   +K++K     D T++   GG
Sbjct: 1  MNINIQAVKFTMDEDQKKYLDQKFKRIEYADNLITDIQCFIKLDK-KFIYDTTINFRWGG 59

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            H S E  +  A ++ ++D   +++ K KDK+++
Sbjct: 60 TAHVSTENYEFEAGVNKMMDIADQKVKKEKDKVQE 94


>UniRef50_A1WVP9 Ribosomal subunit interface protein, putative n=2
           Tax=Ectothiorhodospiraceae RepID=A1WVP9_HALHL
          Length = 115

 Score = 52.2 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 1   MQLNIT-GNNVEITEALREFVTAKFAKLEQYF-DRINQVYVVLK-----VEKVTHTSDAT 53
           MQ+ I  G  V I++AL E +      +++ F +++ ++ V  +        V       
Sbjct: 1   MQIQINPGAGVHISDALEESIREALGAVDRRFGEQLTRIEVHFQDINGPKGGVNKHCRIE 60

Query: 54  LHVNGGE-IHASAEGQDMYAAIDGLIDKLAR----QLTKHKDKLKQ 94
               G + + A     D Y A  G   KL R    +L K  DK ++
Sbjct: 61  ARPRGLDPVLAENTADDAYDAARGAAKKLERVLDGRLGKLADKQRK 106


>UniRef50_C6WEC1 Putative uncharacterized protein n=1 Tax=Actinosynnema mirum DSM
          43827 RepID=C6WEC1_ACTMD
          Length = 98

 Score = 51.8 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVLKVEKVTH-TSDATLHVNG 58
          MQL++      + EA RE+   K   L +Y         V L  +      +  TLHV+G
Sbjct: 10 MQLSLARR---VPEAAREYAGVKIGCLGKYAPGEVPFAMVRLSYDGPRRLVAHGTLHVDG 66

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
            ++A A  +     +D L D+L  QL K   
Sbjct: 67 HAVNADAGAETFIEVVDLLQDRLKAQLVKMHG 98


>UniRef50_B2IF06 Cold-shock DNA-binding domain protein n=1 Tax=Beijerinckia indica
           subsp. indica ATCC 9039 RepID=B2IF06_BEII9
          Length = 187

 Score = 51.5 bits (123), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 1   MQLN--ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS----DATL 54
           M++   I       TE  R  +  K A LE+++DRI    VV+K     H +    +  +
Sbjct: 1   MEVQAQIDFQGFHPTEQQRALIEQKIAGLEEFYDRITACRVVMKAPSHHHRTGGQYEVNI 60

Query: 55  HV---NGGEIHAS------AEGQDMYAAIDGLIDKLARQL----TKHKDKLKQH 95
           H+    G E+             D   AI+    +  R+L       + ++K H
Sbjct: 61  HLVLPEGREVVVERTPPEDERFSDPMFAINDAFSRARRRLQDEVRHIRGQVKVH 114


>UniRef50_Q1PZB4 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1PZB4_9BACT
          Length = 176

 Score = 51.1 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLHV 56
           L I   + ++TEA +  +     KL+  +DRI +  VV++  +        +     + +
Sbjct: 5   LEIVARDFDLTEANKADIHKYAEKLDAAYDRIIRCRVVVEALRHREHKGLFYNVKVVVTI 64

Query: 57  NGGEIHASAE-GQDMYAAIDGLIDKLARQLT----KHKDKLKQH 95
            G E+    +  +D + A+    + + R+L     +   K+K H
Sbjct: 65  PGTELVIKRKPNEDFHLAVKDSFNAMRRKLEDFVVQRSGKVKHH 108


>UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia RepID=B2S0F3_BORHD
          Length = 103

 Score = 51.1 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVLKVEKVTHTSDATLHVN-G 58
          M+  I   N  ++ + ++F+  K  KL  +  + ++ + + +K E      DA LH N G
Sbjct: 6  MEPKIQAINYHLSNSTKDFIIKKLEKLGTHIKQNSESLKITIKKENDIFDIDAHLHFNWG 65

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
            IH   EG+++Y +I+ LI++L     K K+K
Sbjct: 66 KIIHIKEEGKELYHSIENLIERLQNTANKEKNK 98


>UniRef50_Q11EM9 Cold-shock protein, DNA-binding n=1 Tax=Chelativorans sp. BNC1
           RepID=Q11EM9_MESSB
          Length = 194

 Score = 50.7 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 18/113 (15%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK-----VEKVT---HTS 50
           MQ+   I  +  E ++   + + A+  KL+ Y DRI    V +      VE         
Sbjct: 1   MQVPLQIAFHKAEKSDWAEQEIRARVDKLQTYHDRIIGCRVTVDQRARNVEGTLPPVVRI 60

Query: 51  DATLHVNGGEIHASA--------EGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + +L      I A          +  D+  AI+   +   R+L + K+     
Sbjct: 61  EISLPGTAPVIVAYEPDRLQQKYQSPDLGNAINDAFNLAERRLAQIKEARDGR 113


>UniRef50_D2QBL1 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM
          74 RepID=D2QBL1_9SPHI
          Length = 98

 Score = 49.2 bits (117), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57
          ++++       T  L E V ++  ++ ++   I      L+ E             L + 
Sbjct: 9  KIDLQTVGFNETTELVEQVESELRRIMRFRSDIVAADFYLREEGSNPTENKLVRWRLGIP 68

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQ 84
          G ++ A   G    A +    DKL RQ
Sbjct: 69 GNDLFAEGTGPSWAAGLRAAGDKLRRQ 95


>UniRef50_A4VJU5 Ribosomal subunit interface protein, putative n=5 Tax=Pseudomonas
           RepID=A4VJU5_PSEU5
          Length = 104

 Score = 49.2 bits (117), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 1   MQLNITGNN-VEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           MQ+ +  N+ + +T  L E + A    +L+++ D + +V V L  E              
Sbjct: 1   MQVLVNSNHSISVTADLEERIKATVETELDRFDDHLTRVEVHLNDENSNKSGPHDKRCQM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              V G + I A+ + + +  AI+G  +KL   L+   DKL +H
Sbjct: 61  EARVKGHDPISATHKAETLDLAINGAAEKLNHALSHALDKLNRH 104


>UniRef50_C6QHD0 Cold-shock DNA-binding domain protein n=1 Tax=Hyphomicrobium
           denitrificans ATCC 51888 RepID=C6QHD0_9RHIZ
          Length = 121

 Score = 49.2 bits (117), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           + I+  ++E + A+   V  +  KLEQ+  R+    VV+  E+  H           L V
Sbjct: 5   VQISFEHLEHSGAIEHRVREQLEKLEQFCGRLTAARVVVAREQRRHHKGDNYSVRLLLSV 64

Query: 57  NGGEIHA-------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G E  A       +   +D++  I        R+L     K ++ 
Sbjct: 65  PGAEDIAITHNTTDTGRHEDIHVVISDAFAAARRRLQDFVGKRQRR 110


>UniRef50_A7HIK3 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HIK3_ANADF
          Length = 134

 Score = 48.8 bits (116), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQ-YFDRINQVYVVL-----KVEKVTHTSDAT 53
           M+L+I  N++ +   +  F+     + L + Y D   ++ V       K   V      +
Sbjct: 1   MKLSIHANHLSLPNDVMRFIEKHVTRPLARVYDDSAAELAVHFDDSRRKKGGVDQACRLS 60

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             + G   +H  +   D+Y A+    ++L R + K  DK++
Sbjct: 61  FRMPGARTVHVESVEDDLYKALLDASERLKRHVRKQVDKMR 101


>UniRef50_C3XBE7 Predicted protein n=2 Tax=Oxalobacter formigenes RepID=C3XBE7_OXAFO
          Length = 119

 Score = 48.8 bits (116), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M   I    ++  EA++E++  +    L    + I+ + + L                 L
Sbjct: 1   MAPTIITKGIKAGEAIQEYIQERMDTMLSHTQNSIDYIMIRLSDTNRIKSGFKKRCLIQL 60

Query: 55  HVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + G   I  +    DM +A D    + +R L K   K K+
Sbjct: 61  SLPGMSPIVVTEFAADMKSAFDSATRRASRLLNKTLSKAKE 101


>UniRef50_B1ZS48 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1
          RepID=B1ZS48_OPITP
          Length = 120

 Score = 48.8 bits (116), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE---KVTHTSDATLHVN 57
          M+L++   +V  T++L  +V    + L      I++ +V L+ +      +     L V 
Sbjct: 1  MKLSLKHVHVRPTDSLDSWVEEGLSTLRPLL-AIDEAHVRLEHDAAASPAYRVTVHLVVP 59

Query: 58 GGEIHASAEGQDMYAAIDGLIDKL 81
          G ++ A A    +  A   ++ +L
Sbjct: 60 GPDLRADAVDHTLRTAFAKVLGEL 83


>UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus communis
          RepID=B9TBM2_RICCO
          Length = 58

 Score = 48.4 bits (115), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G  ++  +  QD+YAAID LIDKL RQ+ K+K K++ H
Sbjct: 3  GKTVYVESLSQDLYAAIDTLIDKLDRQVMKYKAKVQGH 40


>UniRef50_B4CWD9 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus
          Ellin428 RepID=B4CWD9_9BACT
          Length = 116

 Score = 48.4 bits (115), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHVNGGEIHA 63
          +  +EA+ E V  +  KL +YFDRI    VV++                 L V G E+  
Sbjct: 1  MAPSEAVTERVQKETEKLGKYFDRITSCSVVIEAPQKHHHHGEPFHVRIELGVPGKELVV 60

Query: 64 SAE 66
          + +
Sbjct: 61 TQK 63


>UniRef50_UPI00016A5540 putative RNA polymerase, sigma 28 subunit, FliA/WhiG family protein
           n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A5540
          Length = 379

 Score = 47.2 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 1   MQLNITGNNVE--ITEALREFVTAKFAK-----LEQYFDRINQVYVVLKVEKVT--HTSD 51
           M+  I+  N+       L+  +     +     L  +   + ++   L+       + + 
Sbjct: 1   MKTAISYRNISELARPDLKGLIGNLLDRHLQPHLSHFPAELVRLRATLERSGHRSLYRAR 60

Query: 52  ATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             L +    +  S E  ++  A++    +L RQL +H   L+
Sbjct: 61  LRLGLPSTTLTCSDESPELGKALERSFAELERQLERHIAHLR 102


>UniRef50_A5FK95 Putative uncharacterized protein n=2 Tax=Flavobacteriales
           RepID=A5FK95_FLAJ1
          Length = 104

 Score = 47.2 bits (112), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEK------VTHTSDA 52
           M++ I T  N+E  + L ++ + +  K L ++ D+I ++ V    E              
Sbjct: 1   MKIQINTDKNIEGHQRLEKYFSEELEKGLARFEDKITRIEVHFGDENGEKFSLNDKKCVL 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +     + I  +   + +  A +G + K+ + LT   +KLK H
Sbjct: 61  EVRTAKLQPITVTEHAETLEKAFNGALSKIKKSLTTTFEKLKAH 104


>UniRef50_A4XWR8 Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina ymp
           RepID=A4XWR8_PSEMY
          Length = 133

 Score = 46.8 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 1   MQLNITG-NNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVE------KVTHTSDA 52
           MQ+ +   N++  + AL + V  +   KL+++ D + ++ V    E              
Sbjct: 30  MQVMVNSDNHIHGSAALEDRVRGRVTDKLKRFEDHLTRIEVHFNDENSHKSGGQDKRCQL 89

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              + G + +  S     +  A++G IDKL   L ++  K +
Sbjct: 90  EARLKGRDPVSVSHNADQLEQALEGAIDKLGTVLERNIGKQR 131


>UniRef50_Q1N2T1 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
           RepID=Q1N2T1_9GAMM
          Length = 136

 Score = 46.5 bits (110), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ +    ++I+  L++++  +    L    D+I +V VVL                 L
Sbjct: 1   MKIIVNVRRLKISAELKKYIKRRLQFALGSRSDQIQRVEVVLSDLNGPKGGEDKHCRMLL 60

Query: 55  HVNGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            + G  ++       +M A +D   ++ +  +TK  D+L+
Sbjct: 61  KLEGHQDVVIEDVDSEMQAVVDKAANRASLTVTKRLDRLR 100


>UniRef50_B2UIV4 Ribosomal subunit interface protein n=2 Tax=Ralstonia pickettii
           RepID=B2UIV4_RALPJ
          Length = 105

 Score = 46.1 bits (109), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
           ++I+   +  ++A+ E V     +L++    + +  V L      + +      +  +  
Sbjct: 5   VDISFQGIPHSKAVEEAVIKHADRLKRIRADLMRCRVSLAVGAKHQHQGKPFDVNVHVFT 64

Query: 57  NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                I ++   +D Y A+      + R L +   K   
Sbjct: 65  PHQTHISSNTSNEDPYVALHEAFSHVERMLLEAGSKRSS 103


>UniRef50_B1C667 Putative uncharacterized protein n=1 Tax=Anaerofustis
          stercorihominis DSM 17244 RepID=B1C667_9FIRM
          Length = 173

 Score = 45.7 bits (108), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 27 LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQL 85
          L++YF +  +  +++   +   T++ T+ V+   +      +D+  A D  I+KL  Q+
Sbjct: 28 LDKYFPKDPKANIMISEIRGLVTTEITVTVDSTFLRVEVSDRDVRNAADKAIEKLEAQI 86


>UniRef50_A4VGA6 Ribosomal subunit interface protein, putative n=2 Tax=Pseudomonas
           RepID=A4VGA6_PSEU5
          Length = 140

 Score = 45.3 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDAT 53
           M + +  N++  +  L E+V      +LE++ D + +V V +  E               
Sbjct: 1   MHVQVNSNHIPGSVELHEWVGTTVEDRLERFDDFLTRVEVHISDENAQKAGADDKRCQIE 60

Query: 54  LHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
               G + +  + + + +  A+DG  DK+   L     KL   
Sbjct: 61  ARPKGHQAVSVTHKAESLQLAVDGAADKMQHALENLMGKLDTR 103


>UniRef50_C5B5J5 Putative uncharacterized protein n=4 Tax=Alphaproteobacteria
           RepID=C5B5J5_METEA
          Length = 390

 Score = 45.3 bits (107), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 1   MQLNITGNNVE------ITEALREFVTAKFAKLEQYFDRINQVYVVLK--VEKVTHTSDA 52
           M +  +  N++        E + E V      L ++ + + ++ VV      K       
Sbjct: 1   MNVIRSFRNLDRHGQQRAPEVIEEEVRQLEPHLARFREDLVRLEVVASQTRGKTRIKVSL 60

Query: 53  TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            L +  G I A  +G ++   +      L  Q+ +H  +LK
Sbjct: 61  RLQLPSGVIAAREDGFEIEPVLRKAFADLRHQVDRHVARLK 101


>UniRef50_C5CTR1 Ribosomal subunit interface protein, putative n=1 Tax=Variovorax
           paradoxus S110 RepID=C5CTR1_VARPS
          Length = 119

 Score = 44.5 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTH--------TS 50
           MQ+ + T N +   +AL  +  A+   +L ++ D + +V V L  E              
Sbjct: 1   MQIQVNTSNGINNKDALERWADAEIKQQLGRFVDDVTRVEVHLSDENHDKAGGGDKCCVM 60

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +A L  +   +  +     +  A  G  DKL R L     +L  H
Sbjct: 61  EARL-AHHQPLAVTQHATTLDEAFRGAADKLKRLLDNTLGRLNNH 104


>UniRef50_A6CVQ4 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CVQ4_9VIBR
          Length = 109

 Score = 44.5 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK--VTHTSDATLHVNG 58
           M ++    ++ ++E++R     K   L     +  +++V +   +    +  +  +H   
Sbjct: 1   MNIHFNTQSIVLSESMRSHCVTKADHLFAVHPQATEIFVSIIHHRSYGQYDVELKVHAEH 60

Query: 59  GEIHASAEGQDMY----AAIDGLIDKLARQLTKHKDKLKQH 95
                   G + Y     A   +  KL +Q TK K +L+ H
Sbjct: 61  QWCFVKHSGDEFYHVAAEAFSAMTHKLQKQKTKVKRELRDH 101


>UniRef50_Q1NMP5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=delta
          proteobacterium MLMS-1 RepID=Q1NMP5_9DELT
          Length = 118

 Score = 44.1 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVL----KVEKVTHTSDATLH 55
          M+L + G N++I ++ ++ + ++ A+L ++   +   + V +      +   +       
Sbjct: 1  MELQVEGRNLDIRQSWQDKIESEKARLLRHHAGLVHHLRVSIEETASHKSGGYEVRLVAA 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          V G  +  + +G+ +   +    D L  QL + + K +
Sbjct: 61 VPGETVVVNRKGESVRTLLGEAFDNLGLQLKELQRKRR 98


>UniRef50_Q5P2J4 Putative uncharacterized protein n=4 Tax=Rhodocyclaceae
           RepID=Q5P2J4_AZOSE
          Length = 117

 Score = 43.8 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++++  + +E    LR++V  +    + ++ D+I    + +                 L
Sbjct: 1   MRIDLQCSGLEAPSGLRDYVARRMRFAIGRFRDQIQWARIKVADVNGPRGGADKRCVVQL 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +    ++  S  G D    +D   +++++ L +   +L+
Sbjct: 61  RLRNCPDVIFSVTGTDARPLVDLAAERVSQVLVRRLARLR 100


>UniRef50_C1ZHK6 Putative uncharacterized protein n=1 Tax=Planctomyces limnophilus
           DSM 3776 RepID=C1ZHK6_PLALI
          Length = 117

 Score = 43.4 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M  N+    + + + LREFV  K    L+++      V + L+                +
Sbjct: 1   MHTNLITRGLVLPQGLREFVDRKLEFALDRFQLSPADVEITLEDINGPRGGQDKRCRLRV 60

Query: 55  -HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +     +     G D+   +   +D++ + L K   K    
Sbjct: 61  GNTKRTRVLIEETGSDLQRVLSRTVDRMEQALAKLHRKHHSR 102


>UniRef50_D0SNV4 Ribosomal subunit interface protein n=4 Tax=Acinetobacter
           RepID=D0SNV4_ACIJU
          Length = 124

 Score = 43.4 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           M + I T  N++ +E L  +V A+   + ++Y +RI    V +  E              
Sbjct: 1   MNIEIRTDKNIQGSERLISYVRAELTQEFQRYSERITHFSVHISDENGEKTGDHDKRCMI 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                G + +  + +  ++ A+I G IDKL R L    +K + H
Sbjct: 61  EARPAGMKPLAVTHKAANIDASIHGAIDKLKRSLEHLYEKKEHH 104


>UniRef50_B1ZSU6 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1
           RepID=B1ZSU6_OPITP
          Length = 119

 Score = 43.0 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           ++ +   N E+ E +R     K   L +    I ++ + L+ +        + +   +  
Sbjct: 12  RVLVRAINFELDEPVRRATADKAVLLVRRHPLIEEICIELENDPTREAPHEYVAKGRIDF 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89
            G  + +S  G D    ++ L+++L  QL K +
Sbjct: 72  GGPALLSSVTGGDATGTLNYLLEQLEHQLRKQR 104


>UniRef50_B8EK85 Cold-shock protein DNA-binding n=2 Tax=Beijerinckiaceae
           RepID=B8EK85_METSB
          Length = 209

 Score = 41.4 bits (97), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 15/108 (13%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDA-------TLH 55
           L I   +++ ++AL + +  +  +LE  F RI    VV         +          + 
Sbjct: 5   LQIVFRDIQHSDALAKLIEDRARRLESAFSRITGCRVVAGAAHGATKNTIPPLSLCVEVE 64

Query: 56  VNG-GEIHASAEGQ---DMYAAIDGLIDKLARQLTKH----KDKLKQH 95
           V G   I A AE +   +  A ++ + D   R+L +     KD +++H
Sbjct: 65  VPGRPMIVAKAEAKRKGEQAALVNRVFDVAERRLEQLSELAKDNVRRH 112


>UniRef50_UPI00016C6947 putative sigma 54 modulation protein n=1 Tax=Clostridium
          difficile QCD-76w55 RepID=UPI00016C6947
          Length = 173

 Score = 41.1 bits (96), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 1  MQLNITGNNV-EITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + I   +  EI++ +   +  K   LE +    + + + ++  K+++  +  L  N  
Sbjct: 1  MDIKIIKKHNKEISKDIELAIHQKLNFLEVFLKENDYIKITVEQNKLSYKIELLLEYNKK 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK 87
           I  +    D +++++ + ++L R+L K
Sbjct: 61 IIKMNEVSGDFFSSLEKITNRLKRKLYK 88


>UniRef50_B4RFH3 Cold-shock DNA-binding domain protein n=1 Tax=Phenylobacterium
          zucineum HLK1 RepID=B4RFH3_PHEZH
          Length = 189

 Score = 41.1 bits (96), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 1  MQL--NITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSD 51
          MQL   IT    +E +EAL+  +  +  KLE++ DRI    V +      +     +   
Sbjct: 1  MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVR 60

Query: 52 ATLHVNG 58
            +   G
Sbjct: 61 LQITAPG 67


>UniRef50_Q6APA9 Similar to cold-shock protein n=2 Tax=Desulfobulbaceae
          RepID=Q6APA9_DESPS
          Length = 176

 Score = 40.7 bits (95), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLK----VEKVTHTSDATLH 55
          M+L +   NV++ ++ +E +  +  KL +++   I  + V ++     ++  +       
Sbjct: 1  MELKVETRNVDLRKSWQEKIDTESEKLIRHYANFILHLRVAIEANTHHKEGGYEVRLVAS 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          V    +  +  G+ + A +    D LA QL + + K ++
Sbjct: 61 VPQDTVVVTRSGEVVRAVLTEAFDVLALQLKEIQRKKRK 99


>UniRef50_Q9Z7W7 Ribosomal protein S30AE n=5 Tax=Chlamydophila RepID=Q9Z7W7_CHLPN
          Length = 228

 Score = 40.3 bits (94), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG-- 59
            + IT     ++  L++ +  K      +   +  + VVL   K    ++  +  + G  
Sbjct: 22  HVEITTKAFRLSMPLKQLILEKSD----HLPPMETIRVVLTSHKDKLGTEVHVVASHGKE 77

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       + Y A+     K+     KH +K K  
Sbjct: 78  ILQTKVHNANPYTAVINAFKKIRTMANKHSNKRKDR 113


>UniRef50_D0LQZ0 Putative uncharacterized protein n=1 Tax=Haliangium ochraceum DSM
           14365 RepID=D0LQZ0_HALO1
          Length = 128

 Score = 40.3 bits (94), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M + I    +E+++ LRE V  +    ++++ DR+ +V V L         V      ++
Sbjct: 1   MHIQIRTQKLEVSDGLRELVRRRLRFAMDRFGDRVQRVTVRLADLNGPRGGVDKHCRISV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                G +      + + A +   I++  R L +   +LK
Sbjct: 61  VTRSQGVVVVEGTDESLPAVVTRAIERAVRALKRANARLK 100


>UniRef50_Q0C2I5 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium
          ATCC 15444 RepID=Q0C2I5_HYPNA
          Length = 107

 Score = 39.9 bits (93), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 1  MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLK---------VEKVTHT 49
          M     TGN V+    + E    +F  +LE++  R++++ V ++          + +   
Sbjct: 1  MDFQFNTGNKVDGDARMDEHFETRFRERLERFEPRLSRIEVHVRDTDGTRRDGPDGIEAV 60

Query: 50 SDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQL 85
           +A    NG  + AS +     AA++  + KL  +L
Sbjct: 61 IEAR-PYNGEPLTASDKAGTPEAAVNAALQKLVTRL 95


>UniRef50_Q21YM4 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens
          T118 RepID=Q21YM4_RHOFD
          Length = 114

 Score = 39.5 bits (92), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 1  MQLNI-TGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT------HTSDA 52
          MQ+ I T +++E  EAL  + T +    L ++   + +V V L  E              
Sbjct: 1  MQIQINTDHHIEGHEALAAWATGEVKSGLSRFSASVTRVEVHLSDENGHKSGPDDKRCVM 60

Query: 53 TLHVNGGE-IHASAEGQDMYAAIDGLIDKLAR 83
             V G + +  +     +Y  + G  +KL+R
Sbjct: 61 EARVQGRQPLAVTHNAPSLYLTVTGATEKLSR 92


>UniRef50_Q48ML3 Ribosomal subunit interface protein, putative n=6
           Tax=Pseudomonadaceae RepID=Q48ML3_PSE14
          Length = 142

 Score = 39.5 bits (92), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 1   MQLNITG-NNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           MQ+ +   N++E +  L E+V       LE Y + + +V V ++ E              
Sbjct: 1   MQIQVNSDNHIESSIRLEEWVRTTVESTLEHYDENLTRVEVHIRDENGDKPGPHDIKCQM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                G + I  S +   +  A+DG   KL   L     KL+
Sbjct: 61  EARPKGHQPISVSHKADTVDQAVDGAAVKLDHALEHLFGKLR 102


>UniRef50_A9BQF4 Ribosomal subunit interface protein, putative n=9
           Tax=Comamonadaceae RepID=A9BQF4_DELAS
          Length = 126

 Score = 39.1 bits (91), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 1   MQLNITGNN-VEITEALREFVTAKF-AKLEQYFDRINQVYVVLK-------VEKVTHTSD 51
           MQ+ +  ++ ++  E+L ++   +  AKL ++ D + +V V L                 
Sbjct: 1   MQVQVHADDSIQGGESLAQWAQEEINAKLARFKDYVVRVEVFLTGVDALKTSGAPGKRCV 60

Query: 52  ATLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                NG   I  +AE + +  A +  I+KL R +     KLK 
Sbjct: 61  LETRANGRPPIAVNAEAEKVKDAFNAAIEKLKRAVETDLGKLKD 104


>UniRef50_B2UIT9 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii
          RepID=B2UIT9_RALPJ
          Length = 113

 Score = 39.1 bits (91), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHV 56
          L+I+  +   ++A+ + V  +   L ++   I +  V L                  +  
Sbjct: 5  LDISFRDFPYSKAIEDAVIEQANSLARFQAEIARCRVKLIQLPRQQTPIQSVRVHIDVMT 64

Query: 57 NG-GEIHASAEGQDMYAAIDGLIDKLARQLTK 87
               +   A G+D  AA+     ++   L +
Sbjct: 65 RHDSHLSGHASGEDARAALREAFREVEFALRR 96


>UniRef50_Q11UA1 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11UA1_CYTH3
          Length = 104

 Score = 39.1 bits (91), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVE------KVTHTSDA 52
           M +   T  NV   E    ++++  +  L+++ + I ++ V L  E              
Sbjct: 1   MTIQFNTDKNVASNERTANYLSSMISDSLDRFSEHITRIEVHLSDENSSKEGGDDKRCVL 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + G +    +     +  A+ G IDKL   L K+ ++ + +
Sbjct: 61  EARMEGKKPFAVTNNADTIEKAVSGAIDKLTTTLEKNLERQRSY 104


>UniRef50_B2UJI3 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii
           RepID=B2UJI3_RALPJ
          Length = 142

 Score = 38.8 bits (90), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLHV 56
           + I  +N+  ++A++  +T   ++L+ +   I +  + L  +      +        + +
Sbjct: 17  VEILFSNLPQSDAIKAAITRFASRLDGFPCDIRRFRICLASDNPERSARGPFLVHIEVDI 76

Query: 57  NGGEIHASAEGQ-DMYAAIDGLIDKLARQLT 86
            G  + A      D++ A+     ++  ++ 
Sbjct: 77  PGRALTADEASDVDVHVALLNAFREMRARVR 107


>UniRef50_B0MTU1 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0MTU1_9BACT
          Length = 380

 Score = 38.8 bits (90), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 14  EALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEG--QDMY 71
           +++R  +T +   LE+ FDRI  V     +E +   +D      G  ++       + + 
Sbjct: 239 DSVRNRLTRQLDSLERNFDRIVTV-----MEHLPQIAD----YMGKSLNTEVAALIETLN 289

Query: 72  AAIDGLIDKLARQ 84
            A+D     L RQ
Sbjct: 290 GAVDNAFADLDRQ 302


>UniRef50_D2R4D6 Putative uncharacterized protein n=1 Tax=Pirellula staleyi DSM 6068
           RepID=D2R4D6_9PLAN
          Length = 117

 Score = 38.0 bits (88), Expect = 0.096,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKV-----THTSDATL 54
           M++ I+     I++ L +F   +    L ++  RI QV V+L  E         T    +
Sbjct: 1   MRIVISNRRAAISKELYDFAERRVLFALSRFAPRIEQVLVLLTDENGPRGGIDQTCQLVI 60

Query: 55  HVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            ++ G +         +  A+    D  +R + +   K + 
Sbjct: 61  QLDRGEQFTIRQCEATVEEAVSRAADAASRMVGRSMAKRRD 101


>UniRef50_A8M8Q2 CBS domain containing protein n=1 Tax=Caldivirga maquilingensis
           IC-167 RepID=A8M8Q2_CALMQ
          Length = 386

 Score = 38.0 bits (88), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 9   NVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-GEIH-ASAE 66
           N +    + + +     K+ +  + +    V ++        + T+ +    E+H A+AE
Sbjct: 291 NNDAKPLIEKVINNHLEKISKLVN-VVDFKVDIRARDSGKRYEVTVRLKDDKELHTATAE 349

Query: 67  GQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +D  +AI   +DK+ + + K+  K + 
Sbjct: 350 DRDPVSAIREAMDKIMQSIIKNVSKARD 377


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C...   113   1e-24
UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari...   113   2e-24
UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P...   111   5e-24
UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=...   111   6e-24
UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3...   110   2e-23
UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D...   108   8e-23
UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot...   108   8e-23
UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst...   107   9e-23
UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3...   107   9e-23
UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot...   107   1e-22
UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot...   107   1e-22
UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ...   106   2e-22
UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3...   106   2e-22
UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost...   106   2e-22
UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot...   106   2e-22
UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio...   106   2e-22
UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot...   106   3e-22
UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3...   105   4e-22
UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3...   105   5e-22
UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be...   104   8e-22
UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation...   103   2e-21
UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo...   102   3e-21
UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3...   102   3e-21
UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil...   101   5e-21
UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac...   101   6e-21
UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits...   101   7e-21
UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid...   101   9e-21
UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ...   100   1e-20
UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo...   100   1e-20
UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c...   100   1e-20
UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein...   100   2e-20
UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm...   100   2e-20
UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2...    99   3e-20
UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3...    99   3e-20
UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3...    99   3e-20
UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e...    99   5e-20
UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3...    99   5e-20
UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida...    98   6e-20
UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap...    98   6e-20
UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther...    97   2e-19
UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot...    97   2e-19
UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr...    97   3e-19
UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3...    97   3e-19
UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom...    96   3e-19
UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3...    96   3e-19
UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo...    96   3e-19
UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl...    96   4e-19
UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul...    96   4e-19
UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria...    95   5e-19
UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo...    95   5e-19
UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis...    95   5e-19
UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami...    95   6e-19
UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr...    95   6e-19
UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot...    95   6e-19
UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot...    95   8e-19
UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ...    95   9e-19
UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium...    95   9e-19
UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P...    95   9e-19
UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_...    94   1e-18
UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys...    93   2e-18
UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3...    93   3e-18
UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe...    93   4e-18
UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob...    92   4e-18
UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri...    92   4e-18
UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot...    92   4e-18
UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict...    92   5e-18
UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot...    92   5e-18
UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ...    92   6e-18
UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro...    92   7e-18
UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3...    91   8e-18
UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil...    91   1e-17
UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes...    91   1e-17
UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3...    91   1e-17
UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y...    90   1e-17
UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad...    90   2e-17
UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta...    90   2e-17
UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot...    90   3e-17
UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia...    89   4e-17
UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ...    89   4e-17
UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3...    89   5e-17
UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri...    89   5e-17
UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation...    89   5e-17
UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter...    89   5e-17
UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot...    88   6e-17
UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic...    88   7e-17
UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation...    88   7e-17
UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot...    88   8e-17
UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg...    88   1e-16
UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin...    88   1e-16
UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3...    88   1e-16
UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3...    87   2e-16
UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S3...    87   2e-16
UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Acti...    87   2e-16
UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot...    87   2e-16
UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2...    87   2e-16
UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri...    87   2e-16
UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax...    87   2e-16
UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R...    87   3e-16
UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu...    86   3e-16
UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea s...    86   3e-16
UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=R...    86   3e-16
UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri...    86   3e-16
UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3...    86   4e-16
UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3...    85   5e-16
UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation...    85   5e-16
UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr...    85   5e-16
UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG...    85   5e-16
UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3...    85   5e-16
UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens ...    85   6e-16
UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3...    85   7e-16
UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3...    85   7e-16
UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne...    85   7e-16
UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p...    85   8e-16
UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=...    84   1e-15
UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae...    84   2e-15
UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter...    83   2e-15
UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)...    83   2e-15
UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid...    83   2e-15
UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex...    83   2e-15
UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero...    83   3e-15
UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation...    83   3e-15
UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re...    83   3e-15
UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium...    83   3e-15
UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p...    83   3e-15
UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re...    83   3e-15
UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ...    83   3e-15
UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro...    83   3e-15
UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact...    83   3e-15
UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba...    83   4e-15
UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri...    82   4e-15
UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil...    82   4e-15
UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3...    82   4e-15
UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax...    82   5e-15
UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3...    82   5e-15
UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro...    82   6e-15
UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S3...    82   7e-15
UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S3...    82   7e-15
UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3...    82   7e-15
UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A...    82   7e-15
UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3...    82   8e-15
UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3...    81   9e-15
UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3...    81   9e-15
UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3...    81   1e-14
UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Gro...    81   1e-14
UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kyto...    80   2e-14
UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida...    80   2e-14
UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor...    80   2e-14
UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorob...    80   2e-14
UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3...    80   2e-14
UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev...    80   3e-14
UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA     80   3e-14
UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa...    80   3e-14
UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact...    79   4e-14
UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal...    79   4e-14
UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal prote...    79   4e-14
UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3...    79   4e-14
UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Prop...    79   5e-14
UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M...    79   5e-14
UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick...    79   5e-14
UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=...    79   5e-14
UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p...    79   6e-14
UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation...    78   6e-14
UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=...    78   6e-14
UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act...    78   7e-14
UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3...    78   7e-14
UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth...    78   7e-14
UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R...    78   8e-14
UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1...    78   9e-14
UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chl...    78   9e-14
UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3...    78   9e-14
UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi...    78   1e-13
UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3...    78   1e-13
UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr...    77   2e-13
UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell...    77   2e-13
UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3...    77   2e-13
UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=...    77   2e-13
UniRef50_A3U9H3 Site-specific recombinase, phage integrase famil...    76   3e-13
UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavob...    76   4e-13
UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associ...    76   4e-13
UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip...    76   4e-13
UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S3...    76   5e-13
UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw...    75   5e-13
UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr...    75   5e-13
UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali...    75   5e-13
UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3...    75   6e-13
UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr...    75   6e-13
UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Ro...    75   6e-13
UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Camp...    75   6e-13
UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S3...    75   8e-13
UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chi...    75   8e-13
UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac...    75   9e-13
UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S3...    75   9e-13
UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magneto...    75   9e-13
UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation...    74   1e-12
UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M6...    74   1e-12
UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=...    74   1e-12
UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation...    74   1e-12
UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostri...    74   1e-12
UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr...    74   1e-12
UniRef50_A2TTF7 Site-specific recombinase, phage integrase famil...    74   2e-12
UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S3...    74   2e-12
UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation ...    73   2e-12
UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Ther...    73   2e-12
UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S3...    73   3e-12
UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella bu...    73   3e-12
UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bactero...    73   3e-12
UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavoba...    72   5e-12
UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Ta...    72   5e-12
UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t...    72   7e-12
UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3...    72   8e-12
UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lu...    72   9e-12
UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum ...    71   1e-11
UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacte...    71   1e-11
UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce...    71   1e-11
UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=...    70   2e-11
UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=p...    70   3e-11
UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S3...    69   4e-11
UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1...    69   5e-11
UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3...    68   7e-11
UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Act...    68   7e-11
UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S3...    68   7e-11
UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwen...    68   8e-11
UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S3...    68   1e-10
UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal prot...    67   1e-10
UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho...    67   1e-10
UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia muc...    67   1e-10
UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylo...    67   2e-10
UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavoba...    67   2e-10
UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=...    67   2e-10
UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3...    67   2e-10
UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3...    67   2e-10
UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azo...    67   2e-10
UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost...    67   2e-10
UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntroph...    67   2e-10
UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3...    67   2e-10
UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Bla...    66   2e-10
UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroh...    66   2e-10
UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia p...    66   4e-10
UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S3...    66   4e-10
UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal p...    66   4e-10
UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal p...    66   4e-10
UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cyst...    66   5e-10
UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reineke...    66   5e-10
UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal pro...    65   7e-10
UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplas...    65   8e-10
UniRef50_A5IBA4 Sigma 54 modulation protein YhbH n=4 Tax=Legione...    65   8e-10
UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Ac...    65   8e-10
UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisp...    65   8e-10
UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl...    64   1e-09
UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax...    64   2e-09
UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verr...    64   2e-09
UniRef50_Q11G12 Sigma 54 modulation protein/ribosomal protein S3...    63   2e-09
UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S3...    63   4e-09
UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S3...    62   4e-09
UniRef50_B4UF98 Cold-shock DNA-binding domain protein n=4 Tax=An...    62   4e-09
UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Or...    62   5e-09
UniRef50_B4WI97 Putative uncharacterized protein n=1 Tax=Synecho...    62   6e-09
UniRef50_A4CQ98 Sigma-54 modulation protein n=1 Tax=Robiginitale...    62   7e-09
UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spiroso...    62   7e-09
UniRef50_A0LCJ5 Putative sigma 54 modulation protein/ribosomal p...    61   1e-08
UniRef50_B8HME4 Cold-shock DNA-binding domain protein n=8 Tax=Cy...    61   1e-08
UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhiz...    61   2e-08
UniRef50_UPI00016C56FB hypothetical protein GobsU_19047 n=1 Tax=...    59   4e-08
UniRef50_Q21KB8 Putative sigma 54 modulation protein/ribosomal p...    59   5e-08
UniRef50_D2MK58 Putative uncharacterized protein n=1 Tax=Candida...    59   5e-08
UniRef50_Q2IHD0 Putative sigma 54 modulation protein/ribosomal p...    58   8e-08
UniRef50_Q2RYB7 Ribosomal subunit interface protein, putative n=...    58   8e-08
UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 T...    58   1e-07
UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S3...    58   1e-07
UniRef50_Q1IU45 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib...    57   1e-07
UniRef50_A6CY25 Putative uncharacterized protein n=1 Tax=Vibrio ...    57   2e-07
UniRef50_A1WVP9 Ribosomal subunit interface protein, putative n=...    56   3e-07
UniRef50_Q1D2Z7 Putative uncharacterized protein n=1 Tax=Myxococ...    56   3e-07
UniRef50_D0MIH4 Putative sigma 54 modulation protein/ribosomal p...    56   3e-07
UniRef50_D2QHG3 Putative uncharacterized protein n=1 Tax=Spiroso...    56   4e-07
UniRef50_Q11EM9 Cold-shock protein, DNA-binding n=1 Tax=Chelativ...    56   5e-07
UniRef50_A6W1F5 Putative sigma 54 modulation protein/ribosomal p...    56   5e-07
UniRef50_Q1PZB4 Putative uncharacterized protein n=1 Tax=Candida...    55   6e-07
UniRef50_C3XBE7 Predicted protein n=2 Tax=Oxalobacter formigenes...    55   8e-07
UniRef50_C6QHD0 Cold-shock DNA-binding domain protein n=1 Tax=Hy...    55   8e-07
UniRef50_B2IF06 Cold-shock DNA-binding domain protein n=1 Tax=Be...    55   8e-07
UniRef50_C3RQU3 Predicted protein n=1 Tax=Mollicutes bacterium D...    55   9e-07
UniRef50_A5ETX8 Putative sigma 54 modulation protein/ribosomal p...    55   9e-07
UniRef50_D2QBL1 Putative uncharacterized protein n=1 Tax=Spiroso...    55   1e-06
UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydroge...    55   1e-06
UniRef50_A4VJU5 Ribosomal subunit interface protein, putative n=...    54   1e-06
UniRef50_A4VGA6 Ribosomal subunit interface protein, putative n=...    54   1e-06
UniRef50_B4D6Y7 Putative sigma 54 modulation protein/ribosomal p...    54   1e-06
UniRef50_A4XWR8 Putative uncharacterized protein n=1 Tax=Pseudom...    54   2e-06
UniRef50_C5CAR2 Ribosomal subunit interface protein n=1 Tax=Micr...    53   2e-06
UniRef50_UPI00016A5540 putative RNA polymerase, sigma 28 subunit...    53   4e-06
UniRef50_A6CVQ4 Putative uncharacterized protein n=1 Tax=Vibrio ...    52   5e-06
UniRef50_C5B5J5 Putative uncharacterized protein n=4 Tax=Alphapr...    52   5e-06
UniRef50_A5FK95 Putative uncharacterized protein n=2 Tax=Flavoba...    52   6e-06
UniRef50_Q73N60 Ribosomal subunit interface protein, putative n=...    52   7e-06
UniRef50_A7HIK3 Putative sigma 54 modulation protein/ribosomal p...    51   8e-06
UniRef50_B4CWD9 Putative uncharacterized protein n=1 Tax=Chthoni...    51   9e-06
UniRef50_Q5P2J4 Putative uncharacterized protein n=4 Tax=Rhodocy...    51   1e-05
UniRef50_C6WEC1 Putative uncharacterized protein n=1 Tax=Actinos...    51   1e-05
UniRef50_C5CTR1 Ribosomal subunit interface protein, putative n=...    51   2e-05
UniRef50_Q1NMP5 Sigma 54 modulation protein/ribosomal protein S3...    50   2e-05
UniRef50_B2UIV4 Ribosomal subunit interface protein n=2 Tax=Rals...    50   2e-05
UniRef50_Q1N2T1 Putative uncharacterized protein n=1 Tax=Bermane...    50   2e-05
UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia R...    50   3e-05
UniRef50_B1ZS48 Putative uncharacterized protein n=1 Tax=Opitutu...    46   3e-04
UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus...    46   3e-04
UniRef50_B1C667 Putative uncharacterized protein n=1 Tax=Anaerof...    44   0.002

Sequences not found previously or not previously below threshold:

UniRef50_C1ZHK6 Putative uncharacterized protein n=1 Tax=Plancto...    48   1e-04
UniRef50_D0SNV4 Ribosomal subunit interface protein n=4 Tax=Acin...    46   3e-04
UniRef50_Q48ML3 Ribosomal subunit interface protein, putative n=...    46   3e-04
UniRef50_Q6APA9 Similar to cold-shock protein n=2 Tax=Desulfobul...    45   6e-04
UniRef50_Q21YM4 Putative uncharacterized protein n=1 Tax=Rhodofe...    44   0.002
UniRef50_Q11UA1 Putative uncharacterized protein n=1 Tax=Cytopha...    43   0.002
UniRef50_Q4KI21 Ribosomal subunit interface protein, putative n=...    43   0.003
UniRef50_B4RFH3 Cold-shock DNA-binding domain protein n=1 Tax=Ph...    43   0.003
UniRef50_B8EK85 Cold-shock protein DNA-binding n=2 Tax=Beijerinc...    43   0.004
UniRef50_D0LQZ0 Putative uncharacterized protein n=1 Tax=Haliang...    42   0.005
UniRef50_B2UIT9 Putative uncharacterized protein n=2 Tax=Ralston...    42   0.006
UniRef50_A9BQF4 Ribosomal subunit interface protein, putative n=...    42   0.007
UniRef50_Q12CA7 Ribosomal subunit interface protein, putative n=...    42   0.007
UniRef50_B1ZSU6 Putative uncharacterized protein n=1 Tax=Opitutu...    41   0.010
UniRef50_UPI00016C6947 putative sigma 54 modulation protein n=1 ...    41   0.012
UniRef50_Q0C2I5 Putative uncharacterized protein n=1 Tax=Hyphomo...    41   0.013
UniRef50_D0CFJ2 Ribosomal subunit interface protein n=13 Tax=Aci...    41   0.014
UniRef50_D2R4D6 Putative uncharacterized protein n=1 Tax=Pirellu...    40   0.025
UniRef50_C4RPJ2 Putative uncharacterized protein n=2 Tax=Micromo...    40   0.026
UniRef50_Q9Z7W7 Ribosomal protein S30AE n=5 Tax=Chlamydophila Re...    40   0.032
UniRef50_B2UJI3 Putative uncharacterized protein n=2 Tax=Ralston...    40   0.035
UniRef50_A8M8Q2 CBS domain containing protein n=1 Tax=Caldivirga...    39   0.039
UniRef50_A8M1R1 Putative uncharacterized protein n=2 Tax=Salinis...    39   0.045
UniRef50_D2RTT7 CBS domain containing membrane protein n=12 Tax=...    38   0.066

>UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales
          RepID=Q97F93_CLOAB
          Length = 174

 Score =  113 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+L ++G N+E+TE LRE V  + +KLE+YF    + +V L VEK     + T+  NG  
Sbjct: 1  MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       DMYA+ID + DKL RQ+ K K KL++ 
Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERR 95


>UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus
           ferrooxydans PV-1 RepID=Q0EWV9_9PROT
          Length = 212

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 65/95 (68%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           MQ++ITG +VE+TE ++ +VT K   L+  FD +  V+VVL VEK     + ++  NG  
Sbjct: 26  MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           IH S E +DMYA+IDG+IDK+ RQL +++ KL +H
Sbjct: 86  IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRH 120


>UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria
          RepID=RP5M_PSEPK
          Length = 102

 Score =  111 bits (280), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 71/94 (75%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NI+G +VE+T+ LR++V  K A++E +FD+I  V V++KVEK+    +ATL + GGE
Sbjct: 1  MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          + A+AE +DMYAAID L DKL RQL KHK+K + 
Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEKQQS 94


>UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular
          organisms RepID=RP5M_SALTY
          Length = 95

 Score =  111 bits (280), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 90/95 (94%), Positives = 93/95 (97%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQLNITG+NVEITEALREFVT KFAKLEQYF+RINQVYVVLKVEKVTH SDATLHVNGGE
Sbjct: 1  MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHASAEGQDMYAAIDGLIDKLARQLT+HKDKLKQH
Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95


>UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3
          Tax=Leptospirillum RepID=A3EWH8_9BACT
          Length = 176

 Score =  110 bits (276), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 57/93 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ +TG ++EITEA+R  V  K   L++      +  V+L VEK     + TLH NG  
Sbjct: 1  MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          IHA +   D+YA++D  +DKL RQL + K+K++
Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIR 93


>UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA
          Length = 191

 Score =  108 bits (270), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 1  MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATL 54
          MQ+  ++G NVE+TE +RE+V  K ++L++Y D+I    V L V      +  +  +  L
Sbjct: 1  MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +V GG I A     DMYAAID   D L RQL K K +
Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTR 97


>UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10
          Tax=Clostridiales RepID=Q0B0B5_SYNWW
          Length = 181

 Score =  108 bits (270), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 57/92 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+  I G N+EIT+AL+++ T + +KLE+Y D + +  V L +E   H  + T+ +NG  
Sbjct: 1  MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
          +       DMY++ID + +KL +Q+ K+K +L
Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRL 92


>UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae
          RepID=Q1DDE8_MYXXD
          Length = 221

 Score =  107 bits (269), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 56/95 (58%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ NIT      +++L+E+   K  ++ +  DR  + +VVL +E+  H +D T+H     
Sbjct: 1  MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +    +  DMYA+ID  +DK+ RQL +++DKLK H
Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSH 95


>UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11
          Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB
          Length = 182

 Score =  107 bits (269), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ  +T  ++E ++AL+ +   K  ++++Y D    V V L VEK+ H ++ T+   G  
Sbjct: 1  MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I A+ E  DMYA+ID + DK+ RQL + K+++K H
Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH 95


>UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6
          Tax=Proteobacteria RepID=Q0ADR1_NITEC
          Length = 111

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/91 (49%), Positives = 65/91 (71%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M LN+TGN+V IT A+R++VT+K  +  ++FD I  + V L V+K+   ++AT+H+ G E
Sbjct: 1  MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I   A+  DMYA+ID L DKLARQ+ KHK+K
Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEK 91


>UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM
          Length = 180

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 60/95 (63%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+N+T  ++E ++ LR +   K +++++Y D     +VVLKVEK  H ++ T+  NG  
Sbjct: 1  MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I+ + E  DMY+AID L D L  Q+ K K+K+++ 
Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRR 95


>UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella
          RepID=B0TYD3_FRAP2
          Length = 102

 Score =  106 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG +VE+T+A++ +V  K  K+  YFD I    V+L VEK    ++A + V G E
Sbjct: 1  MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            A AE +D+YAAID L DKLARQ+ KHK+KL+ 
Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRD 94


>UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12
          Tax=Clostridia RepID=B0K3A9_THEPX
          Length = 181

 Score =  106 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + ++G N + +T+ LR+ V    +KL +YF    +V  VL V+K  H ++ T+   G 
Sbjct: 1  MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             A     DMY +ID ++DK+ +Q+ KHK KLK  
Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96


>UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp.
          7_2_43FAA RepID=C1I442_9CLOT
          Length = 178

 Score =  106 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++++   N   T AL+E +  K +K+++YFD   +    L V+K     + T+  NG  
Sbjct: 1  MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    +DMY +ID ++ KL RQ+ K + KL + 
Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRR 95


>UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12
           Tax=Firmicutes RepID=Q2RLX7_MOOTA
          Length = 190

 Score =  106 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 59/94 (62%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M+L I G N+ +T+ALR+++  +  K+E+Y D ++++ V L V +  H  + T+ +NG  
Sbjct: 16  MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +       DMY ++D +++KL +Q+ K+K +L +
Sbjct: 76  LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNK 109


>UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM
          12809 RepID=C1SGY6_9BACT
          Length = 177

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 53/85 (62%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  N+E+T+A+R++   K +KLE+YFD I    V+L+V+K  H  +  +   G  
Sbjct: 1  MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQL 85
          +    + +D+YA+ID  +DK+ +QL
Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85


>UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8
          Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH
          Length = 113

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/95 (48%), Positives = 70/95 (73%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ ITG++V++T+AL+ +V  KF +LE++FD +   +V+L VEK+   ++A L ++G  
Sbjct: 1  MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +HA    +DMYAAIDG+IDKL RQL KHK+K+  H
Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDH 95


>UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134
          Tax=Bacteria RepID=B8CYM6_HALOH
          Length = 184

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++   G N+++T AL+E+   K +KL +YFD    + ++ ++VEK  H  + T ++NG 
Sbjct: 1  MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +    E QDMYA+IDG+++KL RQ+ K+K K+ +
Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKINR 95


>UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Anaeromyxobacter RepID=A7HIE3_ANADF
          Length = 185

 Score =  105 bits (263), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NIT  ++E TEAL+  V  +   +++Y DR ++ + VL VE + H ++ T+      
Sbjct: 1  MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  +A   DMYA+ID   DK+ RQL KHK+KL  H
Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNH 95


>UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria
          RepID=Q7W3J9_BORPA
          Length = 112

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 66/95 (69%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L+I G ++++T A+RE+V  K A++ ++FD +    V+L VE + H ++ T+ + G +
Sbjct: 1  MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IH  A  +++YAAID L+DK+ RQ+ KHKDK++ H
Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSH 95


>UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98
          Tax=Gammaproteobacteria RepID=A1RNM6_SHESW
          Length = 95

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 76/95 (80%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ + G+++EITE+LR +V  KF+KLE++F++I+ V+VVL VEK+   ++A +++ GGE
Sbjct: 1  MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A++E  DMYAAID LIDKL RQ+ KHK+KL +H
Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95


>UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium
          RepID=C9XLM7_CLODC
          Length = 187

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT-LHVNGG 59
          MQ+ ++G  +++T+ ++ +V  K ++LE+Y D  ++V V +  +K     + T + +NG 
Sbjct: 1  MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A     D+YAAID + DKL+RQ+ K+K K+K 
Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKD 95


>UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia
           sp. EuI1c RepID=D1V7P2_9ACTO
          Length = 283

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + + G +  + E  R  V  K AKLE+Y  ++ +V V L  E            + T+
Sbjct: 1   MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A   D Y+A+DG   KLA +L +  ++   H
Sbjct: 61  YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDH 101


>UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis
          315-B RepID=D1VUS0_9FIRM
          Length = 176

 Score =  101 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L + G N+++ + L+     KF+KL++YF    Q   V   +K     + T+ + G  
Sbjct: 1  MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    QDM+ +ID  +DKL RQ+ K+K +LK+ 
Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKR 95


>UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli
          RepID=Q71WR7_LISMF
          Length = 187

 Score =  101 bits (254), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV----EKVTHTSDATLHVN 57
          + NI G N+E+TE +R++V  K  KLE+YF       V + +    +K     + T+ + 
Sbjct: 3  KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNA-KVEVTIPLP 61

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             + A     D+YA+ID ++DKL RQ+ KHK K+ +
Sbjct: 62 NLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNR 98


>UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida
          DSM 20544 RepID=C9KNJ3_9FIRM
          Length = 181

 Score =  101 bits (253), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE- 60
             + G N+EIT +LRE+V  +  K+ +YFD +  + V+L V K  H  + T+ + GG  
Sbjct: 3  TFTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGIL 62

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       DMY +ID +++KL RQ+ K K KL + 
Sbjct: 63 LRGEESTMDMYTSIDLVVEKLERQIHKQKTKLARR 97


>UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus
          fermentans DSM 20731 RepID=D2RIZ4_ACIFE
          Length = 181

 Score =  101 bits (252), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G N+E+T+AL+++V  +   + + F  + ++  V++VEK  HT + T+  +G  
Sbjct: 1  MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A     +MYA+ID  ++K+ RQ+ K+K +L + 
Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRLMKR 95


>UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21
          RepID=C0WCZ2_9FIRM
          Length = 180

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G N+E+T AL+++V  K   + + F  + ++  V+++E+  H  + T+  +G  
Sbjct: 1  MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    ++MYA+ID  ++K+ RQ+ K+K +L + 
Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRLMKR 95


>UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio
          yellowstonii DSM 11347 RepID=B5YI17_THEYD
          Length = 173

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 61/94 (64%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ I G N+++TEAL++++  +  K E++    ++  V +  EK TH  D  L V+G  
Sbjct: 1  MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          I A  + +D+Y+A+D +++KL +Q+ K+K+K++ 
Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQN 94


>UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms
           RepID=RP5M_RALEH
          Length = 116

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M   I+G++++IT  LRE+V  K  ++ ++FD++  V V+L V+          ++  LH
Sbjct: 1   MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + G +I   A  +D+YAAID L+DKL RQ+ ++KD+++ H
Sbjct: 61  LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGH 100


>UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular
          protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans
          RepID=B0VJD6_9BACT
          Length = 178

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ IT  + E+T+A+R++V    +KL +YFD+I  ++ VL +E   +  + +LH     
Sbjct: 1  MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + + AE  DMY AID  ++K+  Q+ K KD++  H
Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDH 95


>UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria
          RepID=B5JSL3_9GAMM
          Length = 117

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/97 (51%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-- 58
          M +N+TG+++++T+ALR++V  KF +LE++FD + Q++V+L  EK  H ++A +HV    
Sbjct: 1  MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          GE+ A AE +DMYAAIDGL+DKL RQL KHK+KL  H
Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDH 97


>UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2
          RepID=C0QJ65_DESAH
          Length = 179

 Score = 99.2 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 63/95 (66%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ ++T   ++ ++AL+ +V  K  + ++  +   +  VVL VEK+ H ++ TL  +  +
Sbjct: 1  MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHA  E ++MY++ID L+DK+A Q+ K+KDK+++H
Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRH 95


>UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD
          Length = 180

 Score = 99.2 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ--VYVVLKVEKVTHTSDATLHVNG 58
          M+  + G+N+ +T AL+++V  K A+L +YFDR     +YV + VE + H  + T+ VNG
Sbjct: 1  MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              A  +  DMYA+ID   DKL  Q+ ++K+KL + 
Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRR 97


>UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha
           proteobacterium BAL199 RepID=A8TSN7_9PROT
          Length = 202

 Score = 99.2 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
           M++++ G  +++ + LR+ + +    +  +YF    +  V L  +     +D  +H+  G
Sbjct: 10  MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + A     D YAA     +++ +QL ++K +L+ H
Sbjct: 70  ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDH 106


>UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338
           RepID=A4FNI8_SACEN
          Length = 231

 Score = 98.8 bits (246), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
           M + + G NVE+ +  R+ V  K  +LE+Y  +  +  V L  E+           + TL
Sbjct: 1   MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D YAA+D    KL  +L +  D+ K H
Sbjct: 61  KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH 101


>UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1
          Length = 207

 Score = 98.8 bits (246), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58
          MQ ++T    E TEAL+E+   +  ++++YF     V+VV+  E+   H  D T+ + NG
Sbjct: 1  MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +      + M+++ID +  K+ RQ+ ++KDKL+ H
Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTH 97


>UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia
           amoebophila UWE25 RepID=Q6MED7_PARUW
          Length = 211

 Score = 98.5 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 58/94 (61%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
            + ITG +VEIT++++ +   K +K+E++ DRI  V V++ ++K+ H  +  L     +I
Sbjct: 16  NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKI 75

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A   DMYA+ID  I +L  Q+ ++K K++ H
Sbjct: 76  QSQAATPDMYASIDKAIARLEAQIRRYKSKIQDH 109


>UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria
          RepID=RAIA_ECO57
          Length = 113

 Score = 98.5 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 56/91 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +NIT   +EIT A+R+ V  + AKLE++   +   +++L  E     +DAT++   G 
Sbjct: 1  MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + AS + +DMY AI+ LI+KL RQL K + K
Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91


>UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae
          RepID=Q5SIS0_THET8
          Length = 186

 Score = 96.9 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 1  MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATL 54
          M +  + G N+EIT+A+R++V  K A+L++Y D      VVL +    H      ++  +
Sbjct: 1  MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           + GG +    E  D+YAAID  +D+L  Q+ + +++ 
Sbjct: 61 DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERR 98


>UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8
           Tax=Proteobacteria RepID=Q122P6_POLSJ
          Length = 109

 Score = 96.5 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
           M L I+G+++E+T ALR +VT+K  ++ ++FD++  V V+L V+          ++  +H
Sbjct: 1   MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G ++ A +   D+YAA+D L DKL RQ+ ++K K K H
Sbjct: 61  VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDH 100


>UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria
          RepID=RAIA_HAEIN
          Length = 107

 Score = 96.5 bits (240), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M LNIT   ++IT A+RE +  + AKL ++  ++   + VL       + +A++    G 
Sbjct: 1  MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + ASA   DMY AI+ + +KL RQL K + K +  
Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESR 95


>UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6
          Tax=Thermotogaceae RepID=B1LBB6_THESQ
          Length = 178

 Score = 96.5 bits (240), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQ--YFDRINQVYVVLKVE-KVTHTSDATLHVN 57
          M+  ITG  VEI+EA++ ++  +  K+++  Y D +    V ++ + K  +     +++ 
Sbjct: 1  MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G  I+      D+Y AID   D L +Q+ + K++LK H
Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH 98


>UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus
           ATCC 17982 RepID=A7BEC8_9ACTO
          Length = 214

 Score = 96.2 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + +   N EI    RE+V  K +K+ Q++ R  +V V L  E+           + T+
Sbjct: 1   MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A+  D YAA+D    KL  +L + +D++K H
Sbjct: 61  YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDH 101


>UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5
           Tax=Fusobacteriaceae RepID=C7N909_LEPBD
          Length = 106

 Score = 96.2 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M++ I+G  ++IT+A++ +   K +++ +Y D I ++ VVL VE        H +D  + 
Sbjct: 1   MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +G +I   AE +D+YAAID L D+L RQ+ K+K++ K H
Sbjct: 61  ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDH 100


>UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium
          ATCC 15444 RepID=Q0BX30_HYPNA
          Length = 198

 Score = 95.8 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          MQ+ ITG ++E+ EALR  +       + +YF R     V +  +      D  +H+  G
Sbjct: 1  MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + +S +  D YAA++  ++K+ +++ ++K +LK H
Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH 97


>UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA
          Length = 212

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 57/94 (60%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
            + +TG +V +TEA++ +   K +K+++   RI  V + + ++K+ H  D  L V+  +I
Sbjct: 16  NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKI 75

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A   DMY +ID  +DKL RQL K+K +++ H
Sbjct: 76  KSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDH 109


>UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae
           RepID=B4RCJ5_PHEZH
          Length = 222

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
           M++ +TG +V++ EALR  V  + +  +E+YFDR     VV+  E      D  + +  G
Sbjct: 13  MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            ++     G D + A D  + K+ +++ ++K +LK H
Sbjct: 73  QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDH 109


>UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2
          Length = 193

 Score = 95.4 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI-NQVYVVLKVEKV-----THTSDATL 54
          M+L I GNN+ +TE++ ++V +K  K  ++F     +V V L V         H ++ T+
Sbjct: 1  MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + NG  I A    +++YA+ID + DK+ARQL K+K+K
Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK 97


>UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Methylophilales bacterium HTCC2181
          RepID=UPI0000E87FF9
          Length = 104

 Score = 95.4 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 62/95 (65%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG++++IT A+  ++T+KF K+E +F ++  V   L VEK  H +++TLH+   +
Sbjct: 1  MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHA A   DMY AI+ LI KL  Q+ K+K+K   H
Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNH 95


>UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae
          RepID=C6M3U2_NEISI
          Length = 104

 Score = 95.4 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 59/91 (64%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L ITG N ++TEA++ +V+ K  ++ ++      V + L VEK+   ++A +H+ G +
Sbjct: 1  MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +H  A  QDMYAAID L+DKL R + KHK+K
Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEK 91


>UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2
          Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV
          Length = 96

 Score = 95.4 bits (237), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          MQ NITG +++I+ ALRE +     +LEQ +  I    V L++ K    ++ TL +    
Sbjct: 1  MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +IHA    +DMYAAID L +KL +QL + K+KL++ 
Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96


>UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter
           proteolyticus DSM 5265 RepID=B5Y948_COPPD
          Length = 190

 Score = 95.0 bits (236), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57
           ++++ G N+E+T A+++++  K  ++ +YFD I  V VV++ E+         + TL  N
Sbjct: 8   KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDAN 67

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           G  I A  E  D+YAAID   DKL   + + K+KL
Sbjct: 68  GRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKL 102


>UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46
           Tax=Bacteria RepID=Q28VX1_JANSC
          Length = 235

 Score = 95.0 bits (236), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
           M+  I+G  +EI +AL+  V      + ++Y +R     VV          + T+H++ G
Sbjct: 45  MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
               A A   ++YAA +   DKL +QL ++K +LK H
Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDH 141


>UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM
          Length = 209

 Score = 94.6 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + +    ++++ ALRE +  +    + +YF+R  + YV +  E      + ++H+  G
Sbjct: 1  MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A  E  D Y A +  +++L ++L ++K KLK H
Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNH 97


>UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB
           RepID=Q2LSN2_SYNAS
          Length = 209

 Score = 94.6 bits (235), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 56/95 (58%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M++++T  N E      ++V  +  +L +Y D    V+VVL VEK  + ++ ++  NG  
Sbjct: 31  MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +    E +DM+ AID  ++K+ RQL KHK+K++ +
Sbjct: 91  LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGY 125


>UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium
          RepID=C9XIR4_CLODC
          Length = 183

 Score = 94.6 bits (235), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATL-HVNGG 59
          M + I+G  +E+T+A++  +  K +KL+ Y      V V +   K     + T+  VNG 
Sbjct: 1  MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A    +++Y AID + DKL++QL K+K +L+ 
Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQD 95


>UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus
           marinus RepID=A2C0K6_PROM1
          Length = 194

 Score = 94.6 bits (235), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLKVEKVT----HTSDATLH 55
           M+L I G N+E+T +LR++   K  K    F   + +  V L V +       T++ T+ 
Sbjct: 1   MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            NG  I A    +++YA+ID + +KLARQL K+K++   H
Sbjct: 61  ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH 100


>UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB
          Length = 209

 Score = 94.2 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-----HTSDATL 54
           M+L I G N++IT+ +R ++  K  +   +F  +  +V V L V +        T++ T+
Sbjct: 1   MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            VNG  I A    +++YA+ID + DK+AR+L K K+K + 
Sbjct: 61  FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEKRQD 100


>UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae
          RepID=C8P3U4_ERYRH
          Length = 180

 Score = 93.1 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M + I G NVEIT+A++E V  K   L +YF  D   +  VV+ V       + T+    
Sbjct: 1  MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          G + A    +D YAA+D ++DKL  Q+ +HK K+ +
Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISR 96


>UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21
          Tax=Betaproteobacteria RepID=A9BRS9_DELAS
          Length = 119

 Score = 93.1 bits (231), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
          M L I+G+++E+T +LR +V AK  ++ ++FD++  V V+L V           +  TL 
Sbjct: 1  MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          V G ++       D+YAA+D L DKL R + ++K + +
Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQ 98


>UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae
          RepID=B9Y7S1_9FIRM
          Length = 178

 Score = 92.7 bits (230), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M+  I G NV ITEA+R+ +  K + L++Y   D   +  VV++   +T   + T+    
Sbjct: 1  MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G +    E +D+YAAID  IDKL  Q+ + K +L + 
Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRR 97


>UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria
          RepID=A5CWW3_VESOH
          Length = 102

 Score = 92.3 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 68/95 (71%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQLNI+G++++ITEA+++    K  K++ +F+++  + ++L+V+K    ++A +HV+G +
Sbjct: 1  MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A AE  DMY +ID +++KL  Q+ KHK+KL  H
Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNH 95


>UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium
          RepID=C3WBJ3_FUSMR
          Length = 183

 Score = 92.3 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----VEKVTHTSDATLHV 56
          M++ I G  + IT+A++ +   K  ++E+Y D I ++ + L          HT++   ++
Sbjct: 1  MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  + AS    D+YAAIDG+ D L  QL KHKDK++ 
Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIRT 98


>UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3
           Tax=Psychrobacter RepID=A5WCB7_PSYWF
          Length = 132

 Score = 92.3 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 62/104 (59%), Gaps = 10/104 (9%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----------HTS 50
           M ++ITG+++ IT+A+++ V  K +K+E++FD+I  + V+L ++             H +
Sbjct: 1   MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +A + V G E+   +   DMY AI  + DKL RQ+ K+K ++ +
Sbjct: 61  EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRIDR 104


>UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus
          RepID=B5YF17_DICT6
          Length = 179

 Score = 92.3 bits (229), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
          MQ+N    NV IT+ L+++   K ++L ++FD I  + V+   E        H  + T+ 
Sbjct: 1  MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           NG  I AS   QD   +ID ++DKL  QL + K+KL  
Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVD 99


>UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Psychromonas RepID=A1SRN9_PSYIN
          Length = 136

 Score = 91.9 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ IT   + IT+ +R  V  +F KLE+    +   +V++  E      +AT++V   +
Sbjct: 1  MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I A A+  D+Y AI  L  KL RQLTK+  K
Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKYLHK 91


>UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ
          Length = 192

 Score = 91.9 bits (228), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58
          +  I G+N+ IT+A+R ++  K  KLE+YF+ +      +KV   +  T   + T+ +  
Sbjct: 3  RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKN 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + A     D+YA ID +  KL RQ+ K+K ++ +
Sbjct: 63 VTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNR 98


>UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Mannheimia haemolytica serotype A2 str. BOVINE
           RepID=UPI0001BCF930
          Length = 129

 Score = 91.5 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M LNI+   ++IT A+R  +  + AKLE+Y  ++   + +L  +  +   +AT+    G+
Sbjct: 36  MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           + A AE +D+Y AI  +  KL  +L K K+K
Sbjct: 96  LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEK 126


>UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5
           Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE
          Length = 191

 Score = 91.1 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTH-----TSDATL 54
           M + +TG  + +T+ALRE+   K     +  D       +VL VEK          + TL
Sbjct: 1   MSITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPANPRPAVCEVTL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I      +DMYAAID    K+ RQL K+K K+   
Sbjct: 61  RTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDR 101


>UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales
           RepID=RAFY_STRP6
          Length = 182

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 4/98 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTH-TSDATLHVNG 58
           + +I G N+E+TEA+R++V +K  K+E+YF  D+     V LKV +      + T+ ++ 
Sbjct: 3   KFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDS 62

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL-KQH 95
             + A    QDMY +ID ++DK+ RQ+ K+K K+ K+H
Sbjct: 63  VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH 100


>UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes
          RepID=D2BPB3_LACLK
          Length = 185

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTH-TSDATLHVNG 58
          + NI G NVE+T+A+R +V  K  KL++YF+       YV LKV        + TL    
Sbjct: 3  KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKN 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + A    QDMY++ID + +KL RQ+ K+K ++ +
Sbjct: 63 VTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNR 98


>UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18
           Tax=Corynebacterineae RepID=A1T5Y3_MYCVP
          Length = 250

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55
           ++ +TG NVE+ +  R +V  K ++LE++   +    V L  EK           + T  
Sbjct: 48  EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQHVEITAK 107

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  +   A     YAA++  + KL  +L K KD+ K H
Sbjct: 108 GRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH 147


>UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4
           Tax=Actinomycetaceae RepID=C2BSF1_9ACTO
          Length = 219

 Score = 90.4 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ +   N EI    RE++  K AK+EQ   R  +V V L  EK           + T+
Sbjct: 13  MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D YAA+D    KL  +L + +D+ K H
Sbjct: 73  LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH 113


>UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae
          RepID=B0U6N0_XYLFM
          Length = 105

 Score = 90.0 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 56/95 (58%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +   G  +E+T ALRE+V  K  +L+++F    ++   L + K+ H   AT+++ G  
Sbjct: 1  MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          ++A+A    MYAAID + DKL R + KHK+K   H
Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDH 95


>UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium
          KB13 RepID=B6BVF2_9PROT
          Length = 107

 Score = 89.6 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG N+EITEAL   +  KF K+ ++F+ I  V  +LK E   H ++  LH+   E
Sbjct: 1  MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I + A G DMY  ID LI K+ RQ+ K K+K K H
Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDH 95


>UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD
          Length = 189

 Score = 89.6 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDR---INQVYVVLKVEKVTHTS-----DA 52
           M++ + G N+ +T++L  +   K  ++ ++FD    + +  V L  E+    +     + 
Sbjct: 1   MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60

Query: 53  TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           TL +NG  + A    +DMYA+ID + DKL RQ+ +++ +    
Sbjct: 61  TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDR 103


>UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia
          RepID=C4K0H4_RICPU
          Length = 192

 Score = 89.2 bits (221), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56
          M ++++G ++ I   L+E+   +  ++ ++YF  I  + +    E +    D  +     
Sbjct: 1  MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + ++    D+Y A D  + KL +QL K+K K K H
Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNH 99


>UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation
          protein family n=1 Tax=Sorangium cellulosum 'So ce 56'
          RepID=A9G806_SORC5
          Length = 122

 Score = 89.2 bits (221), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  ++  T+A++ +   K AKL+++  +     V L VE +TH +D  L      
Sbjct: 1  MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           HA+  G+DMYA+ID + DKL RQ+   K 
Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIRDGKG 90


>UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Verrucomicrobia RepID=B4D5R5_9BACT
          Length = 191

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGGEI 61
           + +TG +V +T+ ++++ T++   L   + RI + +V+L VEK  H ++  LH  N   I
Sbjct: 10  VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHITI 69

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDK-LKQH 95
            AS E  DMYA+IDG+  K+A+Q+ K+K K L+ H
Sbjct: 70  EASHETDDMYASIDGVAAKIAQQMRKYKTKILRNH 104


>UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50
          RepID=A7VDW4_9CLOT
          Length = 170

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQD 69
          +++TE L+  V  K +KLE+YF       V   VEK     + T+ + G  I A     D
Sbjct: 5  IDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVSDD 64

Query: 70 MYAAIDGLIDKLARQLTKHKDKL 92
          MY +ID +++ + RQ+ +HK KL
Sbjct: 65 MYVSIDLVLEVIERQVNRHKKKL 87


>UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33
          Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN
          Length = 122

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 49/93 (52%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++NI+G++V++T++++E +  KFAK+  +F  +  + +++  E      + + +  G  
Sbjct: 1  MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          I A      MY AI     KL   L   K +LK
Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLK 93


>UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium
          RepID=A5TX76_FUSNP
          Length = 181

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----VEKVTHTSDATLHV 56
          M+L+I G  + +T+A+R++   K +K+E++ D I ++   L          H ++   ++
Sbjct: 1  MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          +G  + A+A   D+YA+ID  +D +   L KHK+K  +
Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSR 98


>UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21
          Tax=Shewanella RepID=A3QBU6_SHELP
          Length = 124

 Score = 88.4 bits (219), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62
          + IT  + E+T  +RE + ++  KL ++  ++   +V++  EK     +A++ +    + 
Sbjct: 2  IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61

Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          A A+ +D+YAAI+ +  KL +QL +   K
Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHK 90


>UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes
          RepID=Y1964_STAS1
          Length = 190

 Score = 88.4 bits (219), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58
          +  I G N+ IT+A+R ++  K  KLE+YF+ +      +KV   +      + T+ +  
Sbjct: 3  RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLKK 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
            + A     D+YA ID + +KL RQ+ K+K 
Sbjct: 63 VTLRAEERNDDLYAGIDLINNKLERQVRKYKT 94


>UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15
           Tax=Desulfovibrionales RepID=Q310S7_DESDG
          Length = 190

 Score = 88.1 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVNG 58
           M +  T  N E ++ L+++   +F KL ++ ++    ++ V+L V+K  H ++      G
Sbjct: 11  MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             + A  + +DMYA ID ++DKL  Q+ KH +K K
Sbjct: 71  LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105


>UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5
          Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5
          Length = 196

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + ++G ++ + +ALR  V  +  + L +YFD     ++ L  +     +D  LH++ G
Sbjct: 1  MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A +   D YA+ D  + ++ ++L ++K KLK  
Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDR 97


>UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna
          RepID=B0S0M8_FINM2
          Length = 179

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          M+LN    ++++T+ L++   +K  KL++YF    Q  VV K EK     + T+ +  G 
Sbjct: 1  MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + A    +D+  AID + D LARQ+ KHK KL++ 
Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKR 96


>UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae
           RepID=A9WMP6_RENSM
          Length = 267

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M+  I+G N+ +++  RE+ T K +KLE   +++ +V   +  +          T + T+
Sbjct: 26  MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I A A   D +AA D   +KL  +L + KDK K H
Sbjct: 86  QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLH 126


>UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP
          Length = 178

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58
          M++ IT  N+++T A+++F   +  K+E+Y D++    + L V+K     +   +HV N 
Sbjct: 1  MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A+A   D+Y AID    K   QL K K+K K  
Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSR 97


>UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Hyphomicrobium denitrificans ATCC 51888
          RepID=C6QEK7_9RHIZ
          Length = 198

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          M + ITG N++   A + + + K    L +Y DR+   +V L+ E+    +  ++ + +G
Sbjct: 1  MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A  EG D Y ++D    +L  ++ ++K ++K H
Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNH 97


>UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Brevundimonas subvibrioides ATCC 15264
           RepID=D0XRD3_9CAUL
          Length = 237

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQ-VYVVLKVEKVTHTSDATLHVN- 57
           MQ+ ++G +V++ EAL   ++ +  + + +YF+R  +   VV+  +      D  + +  
Sbjct: 19  MQVQVSGKHVDVGEALGSRISQELQEGVGKYFERGGENAEVVVSKDGYGFKVDCWVRLAS 78

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G  +  +  G D +AA    ++KL +++ ++K +LK H
Sbjct: 79  GQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDH 116


>UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Actinomycetales
           RepID=D1BCP0_SANKS
          Length = 220

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ + G + E+ +  R     K AK+EQ      +V V +  E            + T+
Sbjct: 1   MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRQSGIRERVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D + A+D  ++KL  +L +  D+ K  
Sbjct: 61  RDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKNR 101


>UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
          Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ
          Length = 207

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV---- 56
          M++ +TG N E+T+  R  V  K  KLE++  RI +V V +K E+    +D  + +    
Sbjct: 1  MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60

Query: 57 --NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
             G  I A A   D  AA+D  +DK+A Q+ +  D
Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRRASD 96


>UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group
          RepID=Q9ZD30_RICPR
          Length = 143

 Score = 86.5 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56
          M ++++G ++ I   L+E+   K  + +++Y   I  + +    E +    D  +     
Sbjct: 1  MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              I ++    D+Y A D  + KL +QL K K K K H
Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNH 99


>UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria
          RepID=A8RDK2_9FIRM
          Length = 177

 Score = 86.5 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M++NI G N+ +T AL E +  K   LE+YF  D      VV++V       + T+    
Sbjct: 1  MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +       D+YAAID  IDKL  Q+ + K +L +
Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTR 96


>UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma
          laidlawii PG-8A RepID=A9NEZ2_ACHLI
          Length = 185

 Score = 86.5 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNN-VEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57
          M+  I G N    T+A++ +V  K  K+   FD   I+ V VVL+V K     + T+   
Sbjct: 1  MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + +     DMYAAID  +DKL  Q+ +HK K++ H
Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHH 98


>UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales
          RepID=RP5M_BRAJA
          Length = 203

 Score = 86.5 bits (214), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M L I+G +V + EALR  V+ +  + L +YFD     ++ L  +     +D  LH++ G
Sbjct: 1  MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A +   D YA+ D  +  + ++L ++K +LK  
Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDR 97


>UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii
          RepID=A9KDT2_COXBN
          Length = 96

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 54/95 (56%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + +TG  V+I+ ALRE    K  +++   D I+ ++++  + K+    DA + + G  
Sbjct: 1  MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I+A AE  DMY  +D L+ KL  QL+K+K K   H
Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDH 95


>UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LMC5_PICSI
          Length = 321

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L I G N ++T+A++ ++  K    ++++ + + +V V L +              + T
Sbjct: 89  RLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVGKGPKIRRCEVT 148

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G + A  E + +YA+ID + D + R+L K K+K   H
Sbjct: 149 LFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKDGGH 191


>UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=Rhizobiales
          RepID=RP5M_RHIME
          Length = 190

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + ++G ++EI ++ R  +  +  + + +YFD      V ++      ++D  LH++ G
Sbjct: 1  MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A+ +  +  +A D   +++ ++L ++K KLK H
Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH 97


>UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0MPR7_9FIRM
          Length = 211

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
           M +NIT   +++T+A  ++ T K   KL+++F       V L  +K   T + T+   G 
Sbjct: 38  MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              +  +  D   A D  ID++ RQ+ K+K ++++
Sbjct: 98  IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEK 132


>UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT
          Length = 200

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEIHASAEGQ 68
          +E ++ALR +   + AK+++YF    +V     VEK+ H +   + + NG ++H+S + +
Sbjct: 1  MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLRNGLQLHSSEKTE 60

Query: 69 DMYAAIDGLIDKLARQLTKHKDKLKQH 95
           MY++ID  + K+ RQ+ ++KD++  H
Sbjct: 61 SMYSSIDMALAKMERQVRRYKDRITNH 87


>UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7
          Tax=Gammaproteobacteria RepID=A6W0C2_MARMS
          Length = 105

 Score = 85.4 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 4  NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHA 63
           I+G+++++T A+++ +  K +K+ +  D+I  V V L  +  +  ++A +H+ G EI A
Sbjct: 5  KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFA 64

Query: 64 SAEGQD-MYAAIDGLIDKLARQLTKHKDKLK 93
          SA  +D ++ AID ++DKLA+Q+ KHK K  
Sbjct: 65 SASSEDRLFHAIDDMVDKLAKQIDKHKTKQS 95


>UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2
          Tax=Alteromonadales RepID=Q21ND3_SACD2
          Length = 118

 Score = 85.4 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+N++G++VE+T+A+R     KF K+  ++  ++ V V L VEK     +AT    G  
Sbjct: 1  MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          +   +   D+YAAI   + KL   L+  K 
Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRKG 90


>UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus
          RepID=Q6MPK4_BDEBA
          Length = 116

 Score = 85.4 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 45/95 (47%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+LN T  +++ +E+L  +   + A++ ++  R     V     K     + +++     
Sbjct: 1  MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKY 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            A+A G D+Y A+D   +K+ +Q  K   + K H
Sbjct: 61 FKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDH 95


>UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO
          Length = 284

 Score = 85.4 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVT---------HTS 50
           ++ + G ++EIT+++RE+   K  K   +FD   + +V V                   +
Sbjct: 81  KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKT 140

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           + T++   G I +  E  D+YA+ID + DKL R+L K K+K
Sbjct: 141 EVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEK 181


>UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Synergistaceae RepID=D1B9M7_THEAS
          Length = 180

 Score = 85.4 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +     NVE+  ++++ +  K  KLE++FDRI    V +  ++  +  + T ++NG  
Sbjct: 1  MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       D+  A +  +  + RQ+ +HKD L   
Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDMLVDR 95


>UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens
           RepID=A9TA00_PHYPA
          Length = 297

 Score = 85.0 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-------HTSDAT 53
           +L I G ++E+T+A++++V  K          +  +V V + V              + T
Sbjct: 89  RLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGRGERLQRCEVT 148

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G + A  E + MYA+ID + D ++R+L K K+K   H
Sbjct: 149 LFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGH 191


>UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Victivallis vadensis ATCC BAA-548
          RepID=D1N462_9BACT
          Length = 114

 Score = 85.0 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++++TG   EIT ++RE+V ++   L E      +   VV+  +K +  +   ++    
Sbjct: 1  MKISVTGRQFEITPSIREYVESRIQALVEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYH 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + A  E  D+Y + D  + K+  QL   ++K++ H
Sbjct: 61 VVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSH 96


>UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Rhodomicrobium vannielii ATCC 17100
          RepID=D2LB60_RHOVA
          Length = 199

 Score = 85.0 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + +TG N+++ E+LRE+   +    L++Y  R     + ++       S   +H+  G
Sbjct: 1  MTIKVTGKNIDLGESLREYALNRVESALDKYSGRSVSGQISVEKNTDGFFSHCAIHLESG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ ++  G D YA++D  +++L ++L ++K ++  H
Sbjct: 61 LDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH 97


>UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae
           RepID=C9M512_9BACT
          Length = 197

 Score = 85.0 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHVNGG 59
           M +  T +N +I   ++E++  K  ++E++F RI  + V +K +K      + T   NG 
Sbjct: 16  MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       D+  A D  +  L R++ +HK+ L   
Sbjct: 76  VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYLIDR 111


>UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29
          Tax=Actinomycetales RepID=C7MXY7_SACVD
          Length = 226

 Score = 85.0 bits (210), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M + I G NVE+ E  R  V  K A+LE+Y  ++    V L  E            + T 
Sbjct: 1  MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLA 82
             G  + A A   D Y A+D  I KL 
Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88


>UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Catenulispora acidiphila DSM 44928
           RepID=C7QBC3_CATAD
          Length = 237

 Score = 84.2 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + +   + E+T+  R  V  K AK+E+   +   + VVL  EK           + TL
Sbjct: 1   MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60

Query: 55  HVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                  I A A   D Y+A+D    KL  QL + KD+ K H
Sbjct: 61  DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIH 102


>UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT
          Length = 110

 Score = 84.2 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT   +++T ++RE+V +KF KLE+    +   +V +  E   +  +A + +  G+
Sbjct: 1  MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A AE +D++AAI+ L  KL RQ+ +H  +    
Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRHIHRPDAR 95


>UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons
           RepID=RR30_SPIOL
          Length = 302

 Score = 84.2 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G N+E+++ +R  V  K  K + ++   + +V V L                + T
Sbjct: 76  KLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVT 135

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G I A  + + +Y++ID +   + R+L K KDK+  H
Sbjct: 136 LFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDH 178


>UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6
           Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS
          Length = 198

 Score = 83.8 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV-----VLKVEKVTHTSDATLH 55
           M L +   N ++++  R+ +  K ++L++Y DRI++V V     + + E   H    T+ 
Sbjct: 6   MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65

Query: 56  VNGGEI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            + G +  A     ++YAAID + D L RQ+ ++KDK 
Sbjct: 66  GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH 103


>UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Fibrobacter succinogenes subsp. succinogenes S85
          RepID=C9RQK5_FIBSS
          Length = 105

 Score = 83.8 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59
          M +  +  +   +  L++ +  +  KL +++  I    V+L  E +     + ++++ G 
Sbjct: 1  MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEVEHQRHCEISVNITGS 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           I ASA+ ++M  A+D  ++++  QL K  DK   H
Sbjct: 61 VIVASADEENMGKAVDVTLERIKVQLKKANDKQNDH 96


>UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH
          Length = 111

 Score = 83.8 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ +T  N+E +E L++FV+ K  K ++ FD   +  V+L VEK  + ++  L  +   
Sbjct: 1  MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLA 82
          I    E +DMYAAID ++DK+ 
Sbjct: 61 IIGKEETEDMYAAIDLVMDKIE 82


>UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Parvibaculum lavamentivorans DS-1
          RepID=A7HPI1_PARL1
          Length = 193

 Score = 83.8 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          MQ+ ++G+++++ +ALR   T +    + +YFDR     V L  +     +D + H+ +G
Sbjct: 1  MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLA 82
            ++A     ++YA+ +  +++L 
Sbjct: 61 LRVNAQGTANEVYASFEAALERLE 84


>UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus
          RepID=C7HV18_9FIRM
          Length = 177

 Score = 83.8 bits (207), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+LNI G N+ + E+L+E    KF +L++YF++  ++ +    E      ++T+ + GG 
Sbjct: 1  MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60

Query: 61 I-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          I  A     +    ID +ID L RQ+ K K KL++
Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQR 95


>UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class)
           RepID=Q6AGI3_LEIXX
          Length = 232

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV-------EKVTHTSDAT 53
           M +NI G N+ IT+  RE+   K  K+    +R     + +         +      + T
Sbjct: 1   MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60

Query: 54  LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L      + + A G D YAA D  + KL  ++ + KD+ K H
Sbjct: 61  LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVH 102


>UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4
          Tax=Acidithiobacillus RepID=RP5M_THIFE
          Length = 78

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK---VEKVTHTSDATLHVN 57
          MQ+ ITG ++++T++++ +   K  +L +YFD ++   VVLK    EK+++  D T++  
Sbjct: 1  MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60

Query: 58 GGEIHASAEGQDMYAAID 75
          G   HA     DMY  ID
Sbjct: 61 GHVFHAEVHDADMYTGID 78


>UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium
          capsulatum ATCC 51196 RepID=C1F1L9_ACIC5
          Length = 225

 Score = 83.1 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+  TG +V +  A R        ++ +   RI   +VVL  EK    ++ T+ +   +
Sbjct: 1  MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
          + ++AE   M  A+   ++K   Q  + K K+
Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKM 92


>UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae
          RepID=A1ZNT3_9SPHI
          Length = 100

 Score = 83.1 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLH 55
          M+L     +      L EF+  K  KLE ++DRI    V L++EK  H       +  L+
Sbjct: 1  MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + G  +          AA D  ++ L RQL KHK+K
Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96


>UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
          ATCC 29799 RepID=A6NQP5_9BACE
          Length = 181

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 45/95 (47%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+   T   V +   +  +   K  KL++YF    +  +V  VEK  +  + T+   G  
Sbjct: 1  MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I  +    DM+A ID  +  + RQL K+K +L++ 
Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKR 95


>UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation protein n=4
           Tax=Actinomycetales RepID=Q2JEZ4_FRASC
          Length = 267

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + + G +  + E  R  V AK AKLE+    I +V V L  E+           + T+
Sbjct: 1   MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRLSDVCDRVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A   D YAA+D    KLA +L +  D+  +H
Sbjct: 61  YSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRH 101


>UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF
          Length = 234

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD------ATLH 55
           Q++ITG NVE+ E   E V  K AK+E+    +   +V L+ E     +D       T  
Sbjct: 25  QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             G    A A+    YAA++  + K+ R L K K +  
Sbjct: 85  GKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRS 122


>UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS
          571 RepID=A8IJQ7_AZOC5
          Length = 198

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M L ++G N+++ EALR+  + + +++  +YFD     +  +  E   + S+  LH++ G
Sbjct: 1  MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A    Q+  A  D  ++K+ ++L ++K +LK  
Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKGR 97


>UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4
           Tax=Betaproteobacteria RepID=Q3SIX5_THIDA
          Length = 189

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
           L IT  ++E +EAL   +  K  KLE +F  I    VVL      K +         + V
Sbjct: 5   LQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRIDIGV 64

Query: 57  NGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            G EI  +    +D+Y A+    D   RQL  +  +L++
Sbjct: 65  PGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRRLRR 103


>UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8
          Length = 99

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M + I   + + T  L  F+  K +KLEQYFD I    V LKV K        +   L V
Sbjct: 1  MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            GE  A         AID  ++ L +QL K K+K++
Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIR 97


>UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12
          Tax=Flavobacteria RepID=A0M3Z9_GRAFK
          Length = 100

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++N+   N    + L +F   K  KL+ YFD+I    V  KV+    K    ++  L V
Sbjct: 1  MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           GG+I          A +D  +  L RQL K K+K+  H
Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99


>UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Epulopiscium sp. 'N.t. morphotype B'
          RepID=UPI00016C04A0
          Length = 177

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 54/94 (57%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+ ++   N E+T+ + + +    ++LE+YF+    + V + VEK   T +  ++ +G  
Sbjct: 1  MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          + A  EG++MY  +D ++  L RQ+ + ++KL+ 
Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLRT 94


>UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides
          RepID=D2EW39_9BACE
          Length = 99

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M++ I   + + +E L+ FV  K AKLE+++D I +V V LKV K        +   + V
Sbjct: 1  MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            GE +A+        A+D  ++ L +QL K+K+K + 
Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRS 98


>UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum
          ATCC 49989 RepID=C7H0Q0_9FIRM
          Length = 176

 Score = 82.7 bits (204), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 52/93 (55%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++NI+  N   ++ L+E +  KF+KL++YF       ++++  K  +  +A L   G  
Sbjct: 1  MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +    +D Y A+D  + KL+RQ++K K KLK
Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLK 93


>UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales
          RepID=A7VXE1_9CLOT
          Length = 183

 Score = 82.3 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGG 59
          M++ ITG  V + +  +E V  K  K  + F       V + VEK   T + T+   +G 
Sbjct: 1  MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             +     +M  A+D +++ L RQ+ K+K KL++
Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEK 95


>UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein n=1 Tax=Porphyromonas uenonis 60-3
           RepID=C2MBI5_9PORP
          Length = 403

 Score = 82.3 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57
            ++I     + +EAL++F   K  +L ++ D I++  + L+++K        +   L V 
Sbjct: 309 NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKIAAIRLFVP 368

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G + +A         AID  ID L RQ+ + K+
Sbjct: 369 GHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE 401


>UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=bacterium Ellin514 RepID=B9XGM0_9BACT
          Length = 117

 Score = 82.3 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M+L +T +N+ +T+A+   + ++  KLE +        V L  +              L 
Sbjct: 1   MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G ++ A     DMYAAID +  K+ +Q+ K + K K  
Sbjct: 61  VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKAR 100


>UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp.
          PE36 RepID=A6FEI0_9GAMM
          Length = 128

 Score = 82.3 bits (203), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVNGG 59
          M   IT   +++T  + E +  K+AKLE++   +   +V +  +K      +A++H+  G
Sbjct: 1  MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          ++ A +EG+D+YAAI  L  KL RQL K+ +K   H
Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH 96


>UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO
          Length = 199

 Score = 81.9 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK----LEQYFDRINQVYVVLKVEKVTHTSDATLHV 56
           M+  +    VE+TEAL  ++  + +K    L+++ D ++   V +  E+  +  + T H+
Sbjct: 1   MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60

Query: 57  N--GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           N     I       D+Y AID + D L R++ K K++L++
Sbjct: 61  NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQE 100


>UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC
           700755 RepID=Q1VZQ7_9FLAO
          Length = 100

 Score = 81.9 bits (202), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M +N    +V  +E L E VT K  KL+  +D I +  V  K E     K     +  L 
Sbjct: 1   MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMICEIKLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + AS+  +    AI   ID + RQL K K+K+  H
Sbjct: 61  APGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100


>UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S30EA n=7
          Tax=Actinobacteridae RepID=A6WEN5_KINRD
          Length = 256

 Score = 81.9 bits (202), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M++ +TG + ++ E  R  V  K  K+ Q+  R  ++ V L  E            + T+
Sbjct: 1  MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRQASSSERVEITV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
             G  + A A   D YAA+D    KL
Sbjct: 61 RDKGPVVRAEACADDPYAALDLATTKL 87


>UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Sphaerobacter thermophilus DSM 20745
          RepID=D1C3T1_SPHTD
          Length = 194

 Score = 81.5 bits (201), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M + I   N+ +T+AL+E++ ++  +L++   ++      ++ E+         +  T+ 
Sbjct: 1  MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTGGEQMVAQFTIA 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
               +    + +D++ AID  I+++ RQ+ + +DK 
Sbjct: 61 TKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKR 97


>UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM
          Length = 112

 Score = 81.5 bits (201), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  NV+ +++++E V       ++ ++ I   +V+L+       ++AT+HV G +
Sbjct: 1  MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I A A   ++YAA+D L DK+ RQL K   K
Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQK 91


>UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter
          RepID=RP5M_ACIGB
          Length = 113

 Score = 81.5 bits (201), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----------THTS 50
          MQ+ I G+++ IT A+ E +  +F ++ ++ D++N + V L  +             H +
Sbjct: 1  MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60

Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89
          +A + + G E+ A A   DMY AI  L DKL RQL KH+
Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99


>UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Sulfurihydrogenibium RepID=B2V794_SULSY
          Length = 187

 Score = 81.5 bits (201), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYF------DRINQVYVVLKVEKVTHT--SDA 52
           MQ+   G N+EIT+ ++ +   K  +L+ Y           +V VV   EK  H    D 
Sbjct: 1   MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60

Query: 53  TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            +++N   GG IHA  E  D+Y+AID +ID++ RQL + K + 
Sbjct: 61  DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRR 103


>UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT
          Length = 178

 Score = 81.1 bits (200), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVTHTSDATLHVNG 58
          M+ NI   ++ +T+ ++E +  K AK+ +  D      + V +  E+  +  + T H+ G
Sbjct: 1  MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +     G D Y  ++ + + L R++ ++K++ +  
Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMR 97


>UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5
          Tax=Alphaproteobacteria RepID=B0T677_CAUSK
          Length = 210

 Score = 81.1 bits (200), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          MQ+ I+G +V++ EALR  V+ +    + +YFDR     VV+  E      D ++ +  G
Sbjct: 1  MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ +   G D +AA D  + K+  ++ ++K +LK H
Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSH 97


>UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Akkermansia muciniphila ATCC BAA-835
           RepID=B2UQU2_AKKM8
          Length = 197

 Score = 81.1 bits (200), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEI 61
           + ITG +VE+T+A+REFVT K   +   F RI +V V+L V++    S   L   +   I
Sbjct: 10  ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHITI 69

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            AS EG DMYA ID  I K+ R++ KHK +L
Sbjct: 70  DASTEGTDMYACIDETITKIMRRMRKHKTRL 100


>UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
           RepID=C6YXL0_ORYSJ
          Length = 321

 Score = 81.1 bits (200), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++ E ++E +  K  + + ++   + +V V L                + T
Sbjct: 82  RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L     G I A  + +  YA+ID     + R+L K K+K   
Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183


>UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius
           DSM 20547 RepID=C7NFI2_KYTSD
          Length = 245

 Score = 80.4 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           MQ+ +TG   ++T+  R  V  K  +L      I++  V+   E            + T 
Sbjct: 1   MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRRSEDAERIEITC 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           H     + A A  +  Y A+D ++ K+  ++ +  D+ K H
Sbjct: 61  HDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVH 101


>UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
          stuttgartiensis RepID=Q1PXY8_9BACT
          Length = 119

 Score = 80.4 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NGG 59
           + I   +++ITEA+R +   K  K++++F+ I  V V L +    +H  +  ++V  G 
Sbjct: 3  NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGP 62

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A A   DMY +ID ++DK+  QL KHK K++ 
Sbjct: 63 TIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIES 97


>UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia
          RepID=C6V4K5_NEORI
          Length = 186

 Score = 80.4 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++ ++G+  ++  +L E++T +    ++++  +     V L  E      D  ++    
Sbjct: 1  MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           I AS E  D Y A D    K+  +L ++KD+LK+H
Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEH 96


>UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorobiaceae
           RepID=Q3B2F4_PELLD
          Length = 130

 Score = 80.0 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
            + +T  +     A+ E+  +    L + +  I   +V+L  +K        ++ TLHV 
Sbjct: 35  TIKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEKNKNAEITLHVP 94

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
             +  A   G      ID  +D L RQL K+K+K+
Sbjct: 95  QHDFIAKESGTAYELCIDACVDALGRQLQKYKEKM 129


>UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Nautiliaceae RepID=B9L9D3_NAUPA
          Length = 166

 Score = 80.0 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVN-G 58
          M + I G NVE+TEA+++ ++   +++E+Y   I    V ++ +K    T +  +++   
Sbjct: 1  MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G      + +DMYAA+D   DKL + L ++ DK+  +
Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDY 97


>UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae
          ATCC 51259 RepID=C9LEJ2_9BACT
          Length = 114

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M+L I      +TE L+ F+  KFAK+ ++ + I+   V+LKV K       ++   ++V
Sbjct: 1  MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
           G   H           +D  ++ + RQL+K+K+K +
Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQR 97


>UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA
          Length = 172

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52
           M   L IT   +E +EAL E +     KLEQ++D I   +VV+      K          
Sbjct: 62  MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRV 121

Query: 53  TLHVNGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + V G  I AS +       +D Y A+    D   RQL  + D L  H
Sbjct: 122 DVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTH 170


>UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula
          bermudensis HTCC2503 RepID=A3VRA6_9PROT
          Length = 197

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + ITG  +++  AL++ VT   +  +E+YFDR  +  V  + E   +  + TLH+  G
Sbjct: 1  MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60

Query: 60 EIHA-SAEGQDMYAAIDGLIDKLA 82
             A   +GQD Y A D  + KL 
Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLE 84


>UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes
          RepID=C6Y270_PEDHD
          Length = 115

 Score = 79.2 bits (195), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M++ +   +    + L +F+  K  KL+Q+FD+I    V LK+E         S+  L V
Sbjct: 1  MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
           GG + A  + +    A D  I+ L +Q+TKHKDK +
Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTR 97


>UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales
           RepID=C6II14_9BACE
          Length = 123

 Score = 79.2 bits (195), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
           M + I   + + +E L+ F+  K +KLE+Y++ I +V V LKV K        +   + +
Sbjct: 25  MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             GE +AS        A+D  ++ L +QL K+K+K + 
Sbjct: 85  PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRS 122


>UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=2
          Tax=Planctomyces RepID=C1Z9P6_PLALI
          Length = 114

 Score = 79.2 bits (195), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59
          MQ+ IT  +  I+   +E +  K  KL  YF R+  + V +  E    T +  +      
Sbjct: 1  MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHKH 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  A+  G ++       + K+ +Q+ K+K+K++ H
Sbjct: 61 DFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDH 96


>UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT
          Length = 177

 Score = 79.2 bits (195), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M    +    + + A+ E++  +F K+++    + I    +  + + + +   A ++  G
Sbjct: 1  MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            I    +  D+Y AID L D L +++ K K  +++ 
Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVRER 97


>UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Propionibacterium
          acnes RepID=D1YBK0_PROAC
          Length = 203

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M++ ++G +  +++ +R  V  + + +E+  DR+ +  VV   +          T + TL
Sbjct: 1  MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITL 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
             G  + A  + +D   A D   D+L  QL K  D
Sbjct: 61 RAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAAD 96


>UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum
           infernorum V4 RepID=B3DYI7_METI4
          Length = 115

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-------KVTHTSDAT 53
           MQ+ I+   V++T+AL   + +KF KL +  +RI    V +  E              A 
Sbjct: 1   MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60

Query: 54  LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L++ G +I A   G D+Y A+D ++D+LARQL K K  L  
Sbjct: 61  LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTD 101


>UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli
          RepID=A8PQ11_9COXI
          Length = 111

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 64/94 (68%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ IT + +++T+AL++++  KF +LE+   + + +++ L +E +   + A +H +G E
Sbjct: 1  MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +A A+ +++Y AID LIDK+ +Q+ KHK K K+
Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKE 94


>UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR
          Length = 209

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 3   LNITGNNVEITEALREFVTAKFA-KLEQYFDR--INQVYVVLKVEKVT-----HTSDATL 54
           + I G N+E+T AL E V  +   ++ +      I +  V+L V K       H  +   
Sbjct: 13  VIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSVSKNPKVKNGHRVEVVT 72

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           ++ G  I    E  DMYA+ID     L R+L K+KD
Sbjct: 73  NLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108


>UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD
          Length = 125

 Score = 78.8 bits (194), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATL 54
           M+L +   + +    L  F+  K  KL+ ++DRI    V LK+ K  +T       +  L
Sbjct: 1   MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +V GG +    +G     A D  ID L  Q+ K K+K   
Sbjct: 61  YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNN 100


>UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
          Tax=Candidatus Solibacter usitatus Ellin6076
          RepID=Q01PW5_SOLUE
          Length = 181

 Score = 78.4 bits (193), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD---RINQVYVVLKVEKVTHTSDATLHVN 57
          M++  TG  VE+  A  + + A+FAK+ +  D   R  +V+V+L +E+  H ++AT++  
Sbjct: 1  MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            ++       D++ AIDG  +KL +Q  K + K + 
Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFRD 97


>UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2
           Tax=Proteobacteria RepID=A4U0N1_9PROT
          Length = 120

 Score = 78.4 bits (193), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV----------VLKVEKVTHTSDA 52
           L IT + ++ +EA+   V  K AKLEQ+FDRI    V           L  +  ++    
Sbjct: 7   LQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESDHKNSSNLHHKGNSYLVRI 66

Query: 53  TLHVNGGEIHAS---AEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            L+V G E+       E +D+YAA+ G    + RQL ++  + +
Sbjct: 67  DLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEYVARSR 110


>UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales
           RepID=D0LFC2_GORB4
          Length = 270

 Score = 78.4 bits (193), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55
            +  +G NVEI +  R +V  K A+LE++   I +  V L  E+           + T  
Sbjct: 62  TVVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITAT 121

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQ 84
             G  + A A G++ YAA++G +DKL  +
Sbjct: 122 GKGPIVRAQACGENFYAALEGSLDKLESR 150


>UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD
          Length = 196

 Score = 78.4 bits (193), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55
            + I+G  V I+EALR  V  K     + FD       VVL+V+K        T++ T+ 
Sbjct: 3   DIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTVF 62

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V    +  +A   DMYAAID   DK++RQL K+K K+ + 
Sbjct: 63  VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVER 102


>UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium
           RepID=A9W5P1_METEP
          Length = 202

 Score = 78.0 bits (192), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 3   LNITGNNVEITEALREFVTAKFAK-LEQYFDRINQV----YVVLKVEKVTHTSDATLH-V 56
           L +TG+ +++  ALR  V  + A  L +Y D         +V L+ +   + +D  LH V
Sbjct: 4   LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G  + AS    D++A+ +   DKL ++L ++K KLK H
Sbjct: 64  TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDH 102


>UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR
          Length = 256

 Score = 78.0 bits (192), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M  NI G NV IT+ +RE +  K   ++ + DRI    ++       +T   T+      
Sbjct: 1  MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           H   + +D+Y AID +  K+ R++ K K++
Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKER 91


>UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
           bicolor RepID=C5WRX8_SORBI
          Length = 310

 Score = 78.0 bits (192), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++++ L+E +  K  + + ++   + +V V L                + T
Sbjct: 73  RLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELGRGPKTSRCEIT 132

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           L     G + A  + +  YA+ID     + R+L K K+K
Sbjct: 133 LFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK 171


>UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales
           RepID=A8J8B2_CHLRE
          Length = 286

 Score = 78.0 bits (192), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK--------VEKVTHTSDA 52
           ++ I G  + +T+A++ +V  K AK +  +   + +V V L           K     + 
Sbjct: 71  RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 130

Query: 53  TLH-VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           T++ +  G +       ++YAAID + DK+  +L K K+K    
Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 174


>UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8
           Tax=Chlorobiaceae RepID=B4S5H7_PROA2
          Length = 110

 Score = 78.0 bits (192), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
            + +T  +      + ++       L++ F  I   +V+L  +   +     ++ T+HV 
Sbjct: 12  NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVP 71

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + A   G     AID  +D + RQL K+K+KL+ H
Sbjct: 72  QQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAH 109


>UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae
          MZO-3 RepID=A2PYC3_VIBCH
          Length = 78

 Score = 77.7 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 55/70 (78%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NI G+++++T++++++V +KF KLE++FD IN V V+L+VEK+   ++ATLHVN  E
Sbjct: 1  MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60

Query: 61 IHASAEGQDM 70
          IHA A+ +  
Sbjct: 61 IHAHADDETC 70


>UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3
          Tax=Anaerococcus RepID=C7RDL1_ANAPD
          Length = 179

 Score = 77.7 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          M+LN+   N  +T+ +R     KF +L++YF    ++ V    E      + T  + NG 
Sbjct: 1  MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           + +    +    AID  ID L RQ+ K+K KL
Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKL 93


>UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4
           Tax=Bacteroidetes RepID=A2U255_9FLAO
          Length = 100

 Score = 77.3 bits (190), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M +N   ++VE +E L  + T K  KL   F  I +  V  K E           +  L 
Sbjct: 1   MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTSSDNTGMICNIRLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G  + A A   +  ++I+  +  L  QLTK KDK+  +
Sbjct: 61  VPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMSTY 100


>UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1
          RepID=C0QU53_PERMH
          Length = 188

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI------NQVYVVLKVEKVTHT--SDA 52
          M++   G N+++TE ++ +   K  +L+ Y   I       +V V    EK  H    D 
Sbjct: 1  MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60

Query: 53 TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88
           ++     GG IHA  E  D+Y+AID +ID++ RQL + 
Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRL 99


>UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT
          Length = 119

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ++G N+++TEAL++ V +  + +   + ++N+  VVL         +  LH N   
Sbjct: 1  MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTK 87
          + A AE  DMY +I   +D+L RQL K
Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEK 87


>UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN
          Length = 195

 Score = 76.5 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55
            + I+G  V +++ALR  V  K     + FD +     VVL+V+K        + + T+ 
Sbjct: 3   DIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTVF 62

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           V    +   + G DMY AID   +K+ RQL K+K ++  
Sbjct: 63  VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVD 101


>UniRef50_A3U9H3 Site-specific recombinase, phage integrase family/ribosomal
           subunitinterface protein n=3 Tax=Flavobacteria
           RepID=A3U9H3_9FLAO
          Length = 100

 Score = 76.1 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
           M++N    +V  +E L  F T K  KL   +D I +  V  K E          ++  L 
Sbjct: 1   MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENTSEPDTGMIAEIRLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + A +   +   A+  + ++L  QL K K  +K +
Sbjct: 61  APGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRKASMKTY 100


>UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae
          RepID=C6X055_FLAB3
          Length = 96

 Score = 76.1 bits (187), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++++    +     L E +  K +KLE Y+D+I +  V LKVE    K   T++  L V
Sbjct: 1  MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVENKSDKENKTAEIILAV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G +I           ++D   +   R L K K+
Sbjct: 61 PGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE 94


>UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associated protein n=1
          Tax=Gramella forsetii KT0803 RepID=A0M1S9_GRAFK
          Length = 99

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M+      N++ +E L  F   K  KLE  +D I +  +  K +       + ++  L  
Sbjct: 1  METIFEFVNIDKSENLEAFTQKKLNKLETKYDWIVRANIFFKRDENKKPNGYITEVRLSA 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G EI A ++     A+I      L RQ  K K K+  H
Sbjct: 61 PGPEIFAQSDENSFEASIAETTRDLDRQCEKRKAKMSTH 99


>UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
          17216 RepID=B0MSP2_9BACT
          Length = 98

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M + I     +    L EFV  K  KL+++ +R     V+LK++K        +   LH+
Sbjct: 1  MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G ++ A + G+    A+D  I+ L RQ+ K+K +L++
Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK 98


>UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S30EA n=7
           Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC
          Length = 180

 Score = 75.7 bits (186), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
           M L+ITG   E+T++++ +V + F  L +Y   I     V+  +    K     D  +++
Sbjct: 1   MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADERNGKKGFIVDFLINL 60

Query: 57  -NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                I    + +D+YAAID + ++ ++ L +  DK   H
Sbjct: 61  AKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTH 100


>UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia
          psychrerythraea 34H RepID=Q487B8_COLP3
          Length = 111

 Score = 75.4 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ I+G++VEITE +++ +  KFAK+ +++  I  +   + VE      + T    G +
Sbjct: 1  MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          +  +A  + +Y AI  +  KL   L   K 
Sbjct: 61 VTVNASDKQLYVAIAKVAKKLQSALAHRKG 90


>UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6
          Tax=Leptospira RepID=B0SB82_LEPBA
          Length = 95

 Score = 75.4 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++N T  +++ +EA   +   K  ++ ++  +I    V  +       ++  L+ +G  
Sbjct: 1  MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +A  + +D+Y  IDGL DK+  Q +KH DK  QH
Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95


>UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2S0T2_SALRD
          Length = 132

 Score = 75.4 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVNG 58
           Q  +T  +V++++ + E+   + AKLEQ++D I   +V+L  +       T+   + V  
Sbjct: 30  QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQ 89

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             + A         AI+  +D L RQL K+K KL+ 
Sbjct: 90  KRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRS 125


>UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP
          Length = 127

 Score = 75.4 bits (185), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           ++ + G +  +T+A++E +  KF+ L ++ D I ++ V +  ++       +T+ A + +
Sbjct: 12  KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEI 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            G ++ ASAEG+D Y  ID L++KL RQL   + + K 
Sbjct: 72  GGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKD 109


>UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae
           bacterium DG1235 RepID=B5JG17_9BACT
          Length = 123

 Score = 75.4 bits (185), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDATLH 55
            L ITG ++++TEA+++ V  K  +L ++ +RI +V V L+        +    +   + 
Sbjct: 8   DLIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIE 67

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88
           +NG  ++ S    D Y A+D L+DKL R L + 
Sbjct: 68  INGPTMNVSVSDPDCYKAVDLLVDKLDRMLRRR 100


>UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp.
           GAI101 RepID=B7RH54_9RHOB
          Length = 192

 Score = 75.4 bits (185), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLHVNG 58
            +T  +++ ++A+   V  +  KLE     I +  V ++     H       D +L + G
Sbjct: 6   EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKGTEYIIDISLQMPG 65

Query: 59  GEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             +H            D+Y AI    + + RQL + +D+ K  
Sbjct: 66  STLHIDRHPGDDHAHTDIYVAIRDAFNAMERQLRRWQDQHKGR 108


>UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Campylobacterales
          RepID=D1B1B4_SULD5
          Length = 171

 Score = 75.0 bits (184), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M  +I G   ++TE ++ ++      L +Y   I  V  V+  +    K   + +  +++
Sbjct: 1  MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADEKNGKKGFSVEFAINM 60

Query: 57 NGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               +    + +D+YAA+D  +++  + L +H DKL  
Sbjct: 61 AHKNTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNS 99


>UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB
          Length = 190

 Score = 75.0 bits (184), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 14/107 (13%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52
           MQ  L +T  +++  +ALR  +  +  +L+  FD I   +V L+     H          
Sbjct: 1   MQTPLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRQGNLYEVTI 60

Query: 53  TLHVNGGEIHASAEGQDMYA------AIDGLIDKLARQLTKHKDKLK 93
            L V G E+       D+ A      AI      + RQL  HK ++ 
Sbjct: 61  ELRVPGTELVVHPTKGDVPAHEHPQVAIRDAFTAIERQLRAHKQRIS 107


>UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chitinophaga
          pinensis DSM 2588 RepID=C7PUF5_CHIPD
          Length = 99

 Score = 74.6 bits (183), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55
          M + I   + +    L + V+ K  KL  ++DRI  V V LK++ + H      ++  +H
Sbjct: 1  MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHQVKDKIAEIKVH 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +   ++    E +    + D   D +  Q+ K K+K
Sbjct: 61 IPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK 96


>UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria
           RepID=B8GU63_THISH
          Length = 192

 Score = 74.6 bits (183), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           + +T  N++ + A+ + V A+  KL Q+ D I    VV++       +   +     L V
Sbjct: 9   VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             GE+ A          +D+Y A+    D + RQL     K +  
Sbjct: 69  PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGR 113


>UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Actinomycetales RepID=A0LVS3_ACIC1
          Length = 322

 Score = 74.6 bits (183), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5  ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHVNG 58
          +T   VE+   +R +V  K AK+E+   ++ +V V +  E+           + T    G
Sbjct: 1  MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRLADSCERVELTCISAG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            I A A  + M AA D   +KL  +L K  D+ + H
Sbjct: 61 PPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVH 97


>UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magnetospirillum
           RepID=Q2VZ29_MAGSA
          Length = 158

 Score = 74.6 bits (183), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 18/111 (16%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----------LKVEKVTH 48
           MQ+   IT + V+ ++A+   +  K AKLE  FDRI    VV          L  +    
Sbjct: 39  MQIPLQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVIEQHHKNTSNLHHKGEPF 98

Query: 49  TSDATLHVNGGEIHAS------AEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                L V G E+            +D+Y A+      + RQL ++ D+ +
Sbjct: 99  HIRLALTVPGDELVVKRDPKDSHVNEDIYVALREAFAGMERQLKEYVDRSR 149


>UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
          Tax=Candidatus Koribacter versatilis Ellin345
          RepID=Q1IR29_ACIBL
          Length = 198

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 44/94 (46%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G    IT A+R+ V +   KL +      +  V+L VEK  + ++ T+     +
Sbjct: 1  MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          +    E  DM  AI   ++ + +Q  KH ++ + 
Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQALKHNNRRRN 94


>UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ
          Length = 309

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++ E ++E +  K  + + ++   + +V V L                + T
Sbjct: 82  RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L     G I A  + +  YA+ID     + R+L K K+K   
Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183


>UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1
          Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS
          Length = 211

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          MQ+ + G  +++ +ALR  VT   + L  +YF       VV+  +     +D  +HV  G
Sbjct: 1  MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKL 81
            + +  E  + Y A D   +K+
Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKV 83


>UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=3
           Tax=Campylobacterales RepID=Q30TJ3_SULDN
          Length = 180

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----LKVEKVTHTSDATLHV 56
           M +++TG +VE+T+A++  + A    L +Y   I  V V+     K  K     +  +++
Sbjct: 1   MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIASTQTKKGKDHSVVEFVINL 60

Query: 57  NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                I      QD+YAAID    +  + + +  D+   H
Sbjct: 61  AHKNSIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGH 100


>UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostridium
          methylpentosum DSM 5476 RepID=C0E9I9_9CLOT
          Length = 180

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62
          +NIT    E+ +  ++ +  +  ++++         V L      +  D T+   G  I 
Sbjct: 2  INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIR 61

Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            A  + +  +ID  +D L R+L K K  L  
Sbjct: 62 GEAAAEKIEPSIDFAVDDLKRKLRKLKTSLVD 93


>UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria
          RepID=B6EGD2_ALISL
          Length = 120

 Score = 73.8 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLE--QYFDRINQVYVVLKVEKVTHTSDATLHVNG 58
          M++ ITGNN++IT  +RE +  KF KLE  ++ D I +   V K     H  +A + + G
Sbjct: 1  MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G++ ASAE +D++  I  +  KL RQL K + K +  
Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEAR 97


>UniRef50_A2TTF7 Site-specific recombinase, phage integrase family/ribosomal
          subunit interface protein n=4 Tax=Bacteroidetes
          RepID=A2TTF7_9FLAO
          Length = 103

 Score = 73.8 bits (181), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M + I    ++ +EAL  ++  K  KL + +D + +  V++K E          +  L V
Sbjct: 1  MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKETAQTHHNAICEIELSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  I A ++ ++   A+   I  L  QL K K +   
Sbjct: 61 PGPRIFAQSQEKNFEVAVKETISDLDVQLKKRKAQFTN 98


>UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Thermotogaceae RepID=A6LJQ7_THEM4
          Length = 176

 Score = 73.8 bits (181), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 48/93 (51%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+  I+   VE TEAL+ ++  +  K+++  +   ++ V L+ +   +     +H  G +
Sbjct: 1  MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          +  S +  D+Y  ID L D   +++ + +D ++
Sbjct: 61 LVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVR 93


>UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment)
           n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL
          Length = 192

 Score = 73.4 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ + G + E++   R  + +K AK+EQ   R  +V V++  E            + T+
Sbjct: 1   MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRQSGSSEKVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I A A   D YAA+D  + +L  +L + +D+ K H
Sbjct: 61  VDKGPVIRAEACADDAYAALDVALGRLLERLRRARDRRKDH 101


>UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus
          TCF52B RepID=B7IG48_THEAB
          Length = 176

 Score = 73.4 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 46/95 (48%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M   ++    ++T A++ ++  +F K+++  +    + + L+ +  +    A +H  G +
Sbjct: 1  MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  +    D+Y  ID L D   ++L + ++ ++  
Sbjct: 61 LVVTETSDDIYNLIDILSDAFEKKLKREREYVRTR 95


>UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB
          Length = 180

 Score = 73.0 bits (179), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV-N 57
           L+I G N ++T+ ++ ++      L +    I  +   +  +    K   T +  +HV  
Sbjct: 4   LHIYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADERNGKKGFTFEFDIHVAK 63

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G +  + + +D+YAAID  + +  + L ++ DK+K H
Sbjct: 64  KGNVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNH 101


>UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella burnetii
           RepID=A9KBC8_COXBN
          Length = 183

 Score = 73.0 bits (179), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52
           MQ+   IT  N++ T A+ + +  K  KL QY D+I   ++V+++ K             
Sbjct: 6   MQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRI 65

Query: 53  TLHVNGGEIHASAEG-QDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            L + G E   +    +D+Y AI    D +AR++ +       H
Sbjct: 66  NLTLPGKEFAVNRNEVEDLYVAIRDAFDDMARKVEEEMRMRMGH 109


>UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bacteroides
           RepID=B5D3P6_9BACE
          Length = 113

 Score = 72.7 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHV 56
           M++ I   + + ++ L  F+  K  KLE++ D I +V V LKV K        +   +  
Sbjct: 15  MEVRIQSIHFDASDKLEAFIQKKAEKLEKFCDNIMKVEVSLKVVKPETAMNKEAGVRVLA 74

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              E +A         +ID  ++ L++QL K K+KL+
Sbjct: 75  LNSEFYAEKISDTFEESIDVCMEALSKQLLKAKEKLQ 111


>UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavobacteriales
          bacterium HTCC2170 RepID=A4AQL9_9FLAO
          Length = 99

 Score = 72.3 bits (177), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M ++I    +  +EA+ E ++AK  +L   +D I +  V  K E          +  L  
Sbjct: 1  MTIDIQYVQMPTSEAMNELLSAKLDRLATKYDWIIRAQVHFKQENDPTGKGKICEMELSA 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G  I A +   D   A    I  L +QL+K K  + + 
Sbjct: 61 PGPRIFAQSNEDDFEKAAAKTIKDLEKQLSKRKAIMNKR 99


>UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2
          Tax=Flavobacteriales RepID=A8UI75_9FLAO
          Length = 101

 Score = 72.3 bits (177), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++N    N      L +F+  +  KL+ ++D+I Q  V LKVE    K     +A + V
Sbjct: 1  MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVENTSDKENKIFEAKVSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G       + +      D  I  L RQ+ K K+KL+ 
Sbjct: 61 PGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLRS 98


>UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis
          Bt407 RepID=C3CTB3_BACTU
          Length = 181

 Score = 71.5 bits (175), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L +TG +V +TE ++  +  K   L ++      V V ++VEK   T   ++  NG  
Sbjct: 4  MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEKRL-TISVSVPFNGEL 62

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          I+A ++ +D Y A+D ++DK+ RQ+T  KD
Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKD 92


>UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Aquificaceae RepID=B4U9J0_HYDS0
          Length = 200

 Score = 71.5 bits (175), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYF----DRINQVYVVLKVEKVTH-------- 48
           MQ+   G + EITE LR FV +K +K ++      +   ++ V +   +  H        
Sbjct: 1   MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60

Query: 49  ---TSDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
                D  +++    GG +HA  E +D+Y AID ++D++ RQL K K++ 
Sbjct: 61  SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKERR 110


>UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lutiella nitroferrum
           2002 RepID=B9Z3V7_9NEIS
          Length = 181

 Score = 71.5 bits (175), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
           L I   N+  +EAL   +  K  KLEQ+F R+    V +        +   +     +  
Sbjct: 5   LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVGLPHRHSNQGEHYFVQIDMTA 64

Query: 57  NGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            G E+ ++    +D+Y A+    D   R L  H    +
Sbjct: 65  PGTEVVSNRQNHEDVYVALRDAFDAARRMLEDHVRIRR 102


>UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum 'So ce 56'
           RepID=A9G3G6_SORC5
          Length = 191

 Score = 71.1 bits (174), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATL 54
           MQ+ +T  ++  + +L E +  +  K+E++ D IN   VV++ +         +     L
Sbjct: 1   MQVELTFRHIGKSPSLEELIREQANKIERFNDHINSCAVVVERDHASMGTGGEYRVRVDL 60

Query: 55  HVNG-GEIHASAEGQD--MYAAIDGLIDKLARQLTKHKDKLKQ 94
           HV G  EI +        + AA+  +  +  RQL K  D+ + 
Sbjct: 61  HVAGKHEIVSEERAARNLLPAAVRDVFQRAGRQLKKLADEHRS 103


>UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacteraceae
           RepID=Q0BUA9_GRABC
          Length = 236

 Score = 71.1 bits (174), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQ-YFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
           M + ++G  +++++AL+E V ++   + + YFD+  +  V     +     D  LH   G
Sbjct: 35  MHITVSGKQIDLSDALQERVASQLDTISRKYFDQALEAQVTFSRLRSFFICDINLHAGRG 94

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             +    E  D   A D   + +A++L +++ ++  H
Sbjct: 95  LILRGEGEAADANGAFDDAAEHIAKRLRRYRRRMNAH 131


>UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms
           RepID=A1SY46_PSYIN
          Length = 189

 Score = 70.7 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           L IT  ++  ++A+   +  K AKL++++D I   +VV++       +         L +
Sbjct: 5   LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95
             GE+            +D Y AI      + RQ    + K + K+K H
Sbjct: 65  PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTH 113


>UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium
          spinosum DSM 4136 RepID=UPI000174494B
          Length = 115

 Score = 70.0 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
          MQ++I+  N+++T A+ ++   +   +E     I   +VVL  +     K      A L 
Sbjct: 1  MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          V G +IHA     D+YAA+D     LARQL K K  L  
Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTALVD 98


>UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=pseudomallei group
           RepID=Q2SWQ3_BURTA
          Length = 212

 Score = 69.6 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52
           M+L   ++   +  + AL + V    AKLE+Y   I +  V +      K +        
Sbjct: 104 MKLPLEVSIQGMPRSAALEDAVARHAAKLERYCADIIRCRVSVILDDKHKHQGKPFGVHI 163

Query: 53  TLHVNGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + + G EI ++    +D+Y A+        R L     K +  
Sbjct: 164 DVTIPGHEIVSNRESDEDVYVALRDAFSNAERMLDDAVGKRRDR 207


>UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis
           group RepID=Q3YS76_EHRCJ
          Length = 197

 Score = 69.2 bits (169), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYF--DRINQVYVVLKVEKVTHTSDATLH-V 56
           M + IT    ++T+ ++ +V       + ++F  D    V V L  +     S  ++  +
Sbjct: 1   MNIIITARGFDVTDNIKTYVERSVQDYITKFFADDSTVSVKVTLSKDANLFNSTISISDI 60

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK-DKLKQH 95
               I  S      Y AID  ID L  +L KHK +K+ ++
Sbjct: 61  KSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKTEKINKY 100


>UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
           tauri RepID=Q00W70_OSTTA
          Length = 184

 Score = 68.8 bits (168), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDA 52
           ++ + G ++EIT A+ E+V +K  +   + D   I +V V             V H ++ 
Sbjct: 51  KMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTEV 110

Query: 53  TL-HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           T+    G  +HA   G+++YA ID   D + R + KHK+K 
Sbjct: 111 TVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKH 151


>UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH
          Length = 122

 Score = 68.4 bits (167), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59
          M + IT    E+ + L + +   F K +++        V +K+E       +     + G
Sbjct: 1  MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +I +  E  ++  A +   D+L RQL KHK+K   H
Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAH 96


>UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Actinobacteridae
          RepID=D2RAS6_GARVA
          Length = 223

 Score = 68.4 bits (167), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M++ ITG + +I +  R+ V +K  ++        +V +VL  E            + T+
Sbjct: 1  MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPRQADTAKRVEITV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLID 79
                I A A   D ++A+D  +D
Sbjct: 61 VAGSTVIRAEASSTDQFSALDMALD 85


>UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Campylobacterales RepID=C3XP50_9HELI
          Length = 186

 Score = 68.4 bits (167), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------------KVTH 48
           MQ  IT  + E+T+A+++++ +    LE+Y   I    V++  +            K T 
Sbjct: 1   MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQEKKGSKKGEKKKKRTF 60

Query: 49  TSDATLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             D TL +     +  +   +D YAA+D  I ++ + L ++ DK  +
Sbjct: 61  GIDITLSLAHSNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNK 107


>UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella
           blandensis MED217 RepID=A3XP15_9FLAO
          Length = 120

 Score = 68.0 bits (166), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M  N   ++V  + AL +F   +  KL   +D I +  V  K E          +   L 
Sbjct: 20  MNYNFEYHDVAASAALEDFTKEQLDKLVNKYDFIVRADVFFKTENTSSDETGKIAGIRLS 79

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + A    +  + ++     +L  QL K KDK+K H
Sbjct: 80  APGPRLFADHSSKSFHESVKEATRELNIQLKKRKDKMKSH 119


>UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S30EA n=6
          Tax=Bifidobacterium RepID=B8DT99_BIFA0
          Length = 228

 Score = 67.6 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M + +TG +++I +  R+ V +K  ++        +V VVL  E            + T+
Sbjct: 1  MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRLHDTAVRVELTV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
                + A A   D  +A+D  +DKL
Sbjct: 61 VAGSTVVRAEASSLDEVSALDLALDKL 87


>UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Campylobacterales RepID=Q30TL0_SULDN
          Length = 109

 Score = 67.3 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + +   ++ ++   +  +    A  ++Y   I  V V LK EK     +  +H+   E
Sbjct: 1  MNVQVHAKDITLSANAKGHIETAIAAFKKYSLDITTVNVNLKKEKKGVLVEFDIHIAHSE 60

Query: 61 -IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  +   +D+  AID  ID+ ++ L +  D++  H
Sbjct: 61 PVVINQADEDLDTAIDLAIDRASKALRRLHDRVVSH 96


>UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula
          baltica RepID=Q7UMU4_RHOBA
          Length = 113

 Score = 67.3 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-TSDATLHVNG- 58
          MQ+N++  +  +    +  V  K  KL + +DR+N + V + +E +     +  + V   
Sbjct: 1  MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ A AE   + AA+D  I K  +QL K K+K  +H
Sbjct: 61 DDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEH 97


>UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa
          RepID=D2NS77_9MICC
          Length = 213

 Score = 67.3 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHVN 57
          ++NI G N+++TE L E+V  K  K  Q  D +  + V    +      +   + T+   
Sbjct: 4  EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHLGGESIRVEITVVGT 63

Query: 58 GGEIHASAEGQDMYAAIDGLIDK 80
          G  + + A+G D +A  D    K
Sbjct: 64 GPVLRSEAQGHDKFAVFDETYGK 86


>UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylobacterium
           chloromethanicum CM4 RepID=B7L313_METC4
          Length = 216

 Score = 67.3 bits (164), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
           + +  +++ +  ALRE   A   ++  +YF R+N   V    +   +     + +    I
Sbjct: 10  IVVRSSSIGLGAALRERARAGVERVAAKYFGRLNAATVYFSRDGWGYRCTVNIDMGALRI 69

Query: 62  H-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               + G   +A  D  + K A+QL + K  L+ 
Sbjct: 70  VTGESLGFCCHAVFDAAMRKAAKQLRRLKRALRD 103


>UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium
          MS024-2A RepID=C0BJ85_9BACT
          Length = 99

 Score = 67.3 bits (164), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
           ++    N      L+EF   +  KL  ++++I +++   KVE  +      ++  + + 
Sbjct: 3  NVHFRAVNYTADVTLKEFAQQRLGKLTTFYNQIIEMHCFTKVENTSDKINKWAELKIEIP 62

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          G  +      +    AID   D   R L + K+K+K
Sbjct: 63 GENVVVKKMCKTFEEAIDSAADSAERILKRRKEKIK 98


>UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=5
          Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1
          Length = 179

 Score = 67.3 bits (164), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M++ IT  N  +    R ++  K  ++ +   +I++  + L  E+           ATL+
Sbjct: 1  MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRSQADHFILKATLN 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
               ++A    +++  A D  ++ L +Q+   K K+
Sbjct: 61 TGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKM 97


>UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Marinomonas RepID=A6VX39_MARMS
          Length = 130

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT---SDATLHVNGG 59
           LNI+G++V+  E ++E V  K   L +  ++I  + V L  EK        +A++H+ G 
Sbjct: 4   LNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPGH 63

Query: 60  EIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ A  + +  +  A+D L+ KL +QL KHK K    
Sbjct: 64  DLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAKHAGR 100


>UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT
          Length = 155

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55
           +L ++G ++E+T +L+ FV  K  +L ++ +RI ++ + L+ +           +   + 
Sbjct: 38  ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95
           +NG   +AS    + + A++ L++KL R + +     K+++H
Sbjct: 98  INGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRFFKVQRH 139


>UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii
           DJ RepID=C1DL86_AZOVD
          Length = 189

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           + I  + +E + A+   +  +  +LE++++RI    V        H           L +
Sbjct: 5   VQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHQGRLYQVKVHLTL 64

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             G+IH+          +D Y AI      + RQL  +  K +
Sbjct: 65  PDGDIHSSQAHHDEHAHEDPYVAIRDSFRAVRRQLEDYARKRR 107


>UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus
           lucimarinus CCE9901 RepID=A4SAX9_OSTLU
          Length = 132

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 5   ITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDATL- 54
           + G ++EIT A+ E+  AK  K   + D   I +V V               H ++ T+ 
Sbjct: 3   VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              G  +HA   G+++YA ID   D + R + KHK+K  
Sbjct: 63  MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHS 101


>UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntrophobacterales
           RepID=A0LQL3_SYNFM
          Length = 176

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           L I+ +NV I++A  E +  K  KL++  D++    V +++   +            L V
Sbjct: 5   LEISAHNVHISDATEELIREKAEKLDRINDKLIGCRVRVEIPHRSQRSGILYSVRIELAV 64

Query: 57  NGGEIHASAE-GQDMYAAIDGLIDKLARQLTKHKDKLK 93
            G +I    E  +D++AAI G  +   R+L +  +K +
Sbjct: 65  PGRDIVIKREPDEDLHAAIVGSFETAQRRLKEVAEKQR 102


>UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP
          Length = 126

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLHV 56
           ++ ++G ++E+T +L+ FV  K  +L ++ +RI +V V L+ +          +   + +
Sbjct: 8   EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEI 67

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95
           +G +++A  +  + + AI  LIDKL R L+K     K+++H
Sbjct: 68  HGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRH 108


>UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Blastopirellula
          marina DSM 3645 RepID=A3ZLA7_9PLAN
          Length = 104

 Score = 66.5 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 17 REFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHV-NGGEIHASAEGQDMYAAI 74
          +E ++ K  KL + F+RI  V V + +E       +  +      +  A+     +  A+
Sbjct: 6  QETISEKVQKLTRLFERITSVDVTVDLEHNDKPGVELRVTAERTDDFVAADSCSSLLGAL 65

Query: 75 DGLIDKLARQLTKHKDKLKQH 95
          D  I K+ +QL KHK++LK H
Sbjct: 66 DNSIHKMEQQLRKHKERLKDH 86


>UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium
           ATCC 35110 RepID=B3QW75_CHLT3
          Length = 109

 Score = 66.5 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH----TSDATLHVN 57
            +  T  +      +  +         +Y+  I   +++L  +K        ++   HV 
Sbjct: 12  NVQFTLRHSSNHRDIEAYAKDAIKAFHKYYTDILDCHIILDHQKNDKEQNKIAEIKAHVP 71

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
                +  +G     AID  +  + +QL KH+DK
Sbjct: 72  SHTFVSKEQGPTYEVAIDTCVSNICKQLKKHRDK 105


>UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5
          RepID=B3RGS8_9CAUD
          Length = 105

 Score = 66.1 bits (161), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59
          MQ+ ITG NVEITE +  F++ K +KLE+     N   V +KVE       A +  N G 
Sbjct: 1  MQIEITG-NVEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNSGK 59

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK 87
          E+ A A+G D Y A D ++D  ARQL K
Sbjct: 60 EVIAKAKGSDAYEATDRMVDVAARQLAK 87


>UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT
          Length = 126

 Score = 66.1 bits (161), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           +L + G ++ +T+A++  +     +L ++  RI+++ + +++++         +   + +
Sbjct: 12  KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRVHSGPQMFNAKGIIEL 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G ++ AS   +D Y ++  LI+KL R + K    LK  
Sbjct: 72  RGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALKGR 110


>UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RTG4_9PROT
          Length = 128

 Score = 65.7 bits (160), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           MQ+ I     +++  LRE V  +    L+     ++++ V L                 +
Sbjct: 1   MQIVIQARGFDLSAGLREHVERRLHFALDWAQYHVSRIVVSLSDINGPRGGEDKRCQIRV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + G  E+       D+Y AID  +D++ R L++   + ++H
Sbjct: 61  AMAGAPEVAIDDIESDLYLAIDRAVDRVGRTLSRRLARQREH 102


>UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Acidimicrobium ferrooxidans DSM 10331
           RepID=C7M130_ACIFD
          Length = 182

 Score = 65.7 bits (160), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M +++      +TE  R  V  + A+LE+Y     +V V ++            ++ T  
Sbjct: 1   MAVDLRCRGCTLTEQQRAHVEDRIARLEKYLGAPERVEVHVERAGNPANPDRVVTEVTYV 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V+   + A   G+    + D   ++L R+L + K +L   
Sbjct: 61  VSKAVVRARGVGETELESFDRAEERLKRRLERLKGRLVAR 100


>UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae
           RepID=Q1D1Y2_MYXXD
          Length = 119

 Score = 65.7 bits (160), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRI-NQVYVVL-----KVEKVTHTSDAT 53
           M++ + G ++ +++AL+ +V     + +E++ D    ++ + L         +      T
Sbjct: 1   MKVLLRGVHLNLSDALKSYVDEHLVRHIERFADDEAAEIDISLVDTNGPKGGMDKECRVT 60

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           + + G   +H +     ++ AID   D+L   L +   K + 
Sbjct: 61  VRLPGLSSVHVTETADSLFPAIDASRDRLETSLKRMLGKRRD 102


>UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297
           RepID=A4BJM4_9GAMM
          Length = 115

 Score = 65.7 bits (160), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           MQ+ I   N+++T +LR++V  + +  L     +I +V V+L                 +
Sbjct: 1   MQIEIRSKNIDMTPSLRDYVRRRLSFALGARAGQIQRVQVMLSDINGPKGGNDKHCRILV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +V    ++       ++  AID    + +R LTK   KL++
Sbjct: 61  NVPYIKDVVIEDCQTELKGAIDRAAARTSRTLTKRLMKLQK 101


>UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE
          Length = 117

 Score = 65.0 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M++ + G N  +T+A RE +  +F K+ +    + Q+ V L  ++         ++ATL+
Sbjct: 1  MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPSIPEAQVAEATLY 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88
          + G  + A AE  DM  AI+   ++L +Q+ +H
Sbjct: 61 LKGVTLRARAEAGDMGHAINLCEEQLFKQVKRH 93


>UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplasma marginale
          RepID=B9KIL8_ANAMF
          Length = 104

 Score = 65.0 bits (158), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVN 57
          M + IT    + T +++ +V    +  L +Y        V VV+  E    T+  ++H +
Sbjct: 1  MNVIITCRGYKATASIKSYVEDSISSHLGKYLHDSPQINVRVVMAKEAHMFTACVSIHED 60

Query: 58 GGEIH-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            E   AS   + +Y A+D  +  +A  L K+K++   
Sbjct: 61 HHEFVNASKSAETVYKAVDAAVTHVANGLRKYKEEKTD 98


>UniRef50_A5IBA4 Sigma 54 modulation protein YhbH n=4 Tax=Legionella pneumophila
           RepID=A5IBA4_LEGPC
          Length = 190

 Score = 65.0 bits (158), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHV 56
           + +T  N++ ++A+         KL+  +D+I    VV++     H           L V
Sbjct: 5   IQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRIDLTV 64

Query: 57  NGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              E+  S E       +D+Y ++    + + RQL  + ++ + H
Sbjct: 65  PDAELVVSRESSNKHAHEDVYVSLRDAFNAIERQLKNYANQRRGH 109


>UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Acidiphilium cryptum
           JF-5 RepID=A5G2U9_ACICJ
          Length = 186

 Score = 65.0 bits (158), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           L IT  +++ + AL   +  K   L ++  RI + +V+++       +   + +   + V
Sbjct: 5   LQITFKDIDRSPALEARIREKAEALSRFEARILRCHVIIEAPHRHHHKGKLYRARIEIAV 64

Query: 57  NGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             G+I  + E       +D Y A+    D   R+L  H  +L  
Sbjct: 65  PRGDIVINRESPENHAHEDPYVAVRDAFDAAVRKLEDHARRLDD 108


>UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa
          HTCC2155 RepID=A6DIV0_9BACT
          Length = 115

 Score = 65.0 bits (158), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ +   + ++ + ++  +  +  K +    ++    V+L         +  +      
Sbjct: 1  MEIIVASRHFKVQKDVKTQIVEEMKKFDTCASKLTTAEVILNNIHHNIHVEIIIRGKHLN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + AE  D+  +      K+  QL K + K+K H
Sbjct: 61 CKSEAETDDLLKSFYLAFKKMRNQLDKRRTKVKNH 95


>UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri
           RepID=Q14ME0_SPICI
          Length = 125

 Score = 64.2 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQY----FDRINQVYVVLKVEKV-THTSDATLH 55
           M+  I   N+ IT+A+ + +   F KL +Y     + +  V +    E      +   + 
Sbjct: 1   MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTAIDIR 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                + A     D Y A+D  + K+  QL K K K +  
Sbjct: 61  GRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDR 100


>UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax=Anaplasma centrale
           str. Israel RepID=D1AUL6_ANACI
          Length = 197

 Score = 63.8 bits (155), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKF-AKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57
           M + I     + T +++ +V     + + +Y          VV+  E    T+  ++  +
Sbjct: 1   MNIIIACRGYKATASIKSYVENSIISHVGKYLRDSPEINARVVMAKEAHMLTACVSICED 60

Query: 58  GGEIH-ASAEGQDMYAAIDGLIDKLARQLTKHK-DKLKQH 95
             E   AS     +Y A+D  +  +A +L K+K +K+ +H
Sbjct: 61  HHEFVKASKSADTVYKAVDDAVAHIASKLRKYKGEKIDRH 100


>UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae
           bacterium DG1235 RepID=B5JNT4_9BACT
          Length = 126

 Score = 63.8 bits (155), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55
            + I G ++E+TE+L+  V     KL ++   I ++ V L++E      +    +   + 
Sbjct: 6   NVEIVGRHLELTESLKAKVNEVVEKLYEHDSGITRIRVELEMELHSKTHQNEFIAKGHVV 65

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                  ASA G D+Y AI  L +KL R L ++K + +
Sbjct: 66  DRHDHFDASALGDDLYQAIGSLAEKLDR-LIRNKSRRR 102


>UniRef50_Q11G12 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Chelativorans sp. BNC1 RepID=Q11G12_MESSB
          Length = 109

 Score = 63.4 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHVN 57
            +T  N+E ++A+   V  +  ++E+ FDR+    VV+      K+          L + 
Sbjct: 6   KVTFRNMERSDAIEGHVMRRVEEVEKCFDRVIGCDVVIEAAQKRKLSGRAFKVHVALQIP 65

Query: 58  GGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G ++        S   +++  AI        R+L   KD++  H
Sbjct: 66  GPDVVVTRLVARSKAAENVNLAIHEAFSAATRRLLARKDQMTGH 109


>UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S30EA n=10
          Tax=Sphingomonadales RepID=C8WD98_ZYMMN
          Length = 200

 Score = 62.6 bits (152), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHT-SDATLH-VN 57
          M + I+G+ ++   ALRE+V    +++  +YF +     V     +      D  +H + 
Sbjct: 1  MDIRISGHQIDTGAALREYVNDHLSQIVSKYFPKCLSASVTFGNRRHAIISCDIIIHAMR 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + AS   +D +AA D    K+ +QL +H  +L+  
Sbjct: 61 DIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQTR 98


>UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Methylobacterium RepID=B1Z8J5_METPB
          Length = 163

 Score = 62.3 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59
            + +  +NV++   L ++  A   ++  +Y   +N   V    E   +     L +    
Sbjct: 9   NILVQSSNVDLGSVLPDYARAGIMQVASKYIGNLNIAAVHFNREGGGYRCTVNLQMGALP 68

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +   A+ ++ YAA    ++K+A+QL + K +L++
Sbjct: 69  MMSGEADHRNAYAAFRRALEKVAKQLRRAKRELRE 103


>UniRef50_B4UF98 Cold-shock DNA-binding domain protein n=4 Tax=Anaeromyxobacter
           RepID=B4UF98_ANASK
          Length = 195

 Score = 62.3 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-------TSDATLH 55
           L +   +VE +E L E V     +LE++  RI    V L+     H            L 
Sbjct: 5   LQLAWIHVEPSEPLAERVREAVRRLERFHGRITGCTVALEAPSRHHRNTGAQYRVRIELR 64

Query: 56  VNGGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             GG          S +  D+Y A++     + RQL   + ++   
Sbjct: 65  FPGGRAVVGRAPPRSRDRADLYTAVNAAFRDVRRQLEDRQRRMDGR 110


>UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Orientia
           tsutsugamushi RepID=B3CQ21_ORITI
          Length = 116

 Score = 62.3 bits (151), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 1   MQLNITG--NNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVE-KVTHTSDATLHV 56
           M + I+G      +   L ++V  K   +  +YFD +    V    E          ++ 
Sbjct: 1   MNIIISGSPQYNSVKFNLNQYVNRKIINVANKYFDNLKAPNVHFSKEEHNQFKCHIVVNP 60

Query: 57  ---NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                  I+++    D++A+ D    KL +QL ++K KLK 
Sbjct: 61  ITKQHRIINSTGYSNDVFASFDLARVKLEQQLRRYKSKLKD 101


>UniRef50_B4WI97 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WI97_9SYNE
          Length = 142

 Score = 61.9 bits (150), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDA 52
           M++   I+   V  TEAL   V  K AKLE+++  I+  ++ ++           +    
Sbjct: 1   MRVPPEISYRGVNKTEALETLVAEKIAKLEKFYREISSCHLAIEKVHDHPNSGSPYRVRL 60

Query: 53  TLHVNGGEIHASAEGQD-------MYAAIDGLIDKLARQLTKHKDKLKQH 95
            + V         +  D       + A I    D   RQL +  ++   H
Sbjct: 61  DITVPEDREVVVDKSPDKGVQYQPLEAIIRDTFDIANRQLKELNEQQHNH 110


>UniRef50_A4CQ98 Sigma-54 modulation protein n=1 Tax=Robiginitalea biformata
          HTCC2501 RepID=A4CQ98_9FLAO
          Length = 89

 Score = 61.9 bits (150), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 18 EFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHVNGGEIHASAEGQDMYAA 73
          EF   +  KLEQ++DR+ +  V LKVE    K    ++  + V         + +    A
Sbjct: 2  EFTQRRLDKLEQFYDRVIRAEVFLKVENISEKENKVAEIKMQVPKDTFVVKKQCKSFEEA 61

Query: 74 IDGLIDKLARQLTKHKDKLKQH 95
          +D     L R+L K K K + +
Sbjct: 62 VDSACSSLERKLVKKKRKPRAY 83


>UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM
          74 RepID=D2QEF9_9SPHI
          Length = 121

 Score = 61.9 bits (150), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 5  ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK------VTHTSDATLHVNG 58
          +        ++L +F+ AK  KL+ + DRI    V L++E            +  L + G
Sbjct: 1  MHAVKFTADQSLLDFIQAKLDKLDTFHDRIISGEVFLRLEGADSNKVKEKIVEVRLLLPG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           E+      +   +A D ++D L  +L + K K   
Sbjct: 61 KELFVKEHDKSFESATDRVMDVLKDKLVRFKQKRND 96


>UniRef50_A0LCJ5 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Magnetococcus sp. MC-1 RepID=A0LCJ5_MAGSM
          Length = 103

 Score = 61.1 bits (148), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV--EKVTHTSDAT--LHV 56
          M+L + G  ++I   LR+ +T +   L+Q F  I    V ++         ++    ++V
Sbjct: 1  MELKLEGRQMDIGNELRDRITTRLQTLDQRFGPITHARVSIERKSHNNEQRAEVKTVINV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  I ++ E   +  A++  +D L  +L    +K K+
Sbjct: 61 PGNTISSTKEAATVIPAVNEALDTLTMELQTWAEKNKK 98


>UniRef50_B8HME4 Cold-shock DNA-binding domain protein n=8 Tax=Cyanobacteria
           RepID=B8HME4_CYAP4
          Length = 207

 Score = 60.7 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDA 52
           M++   IT  +V    A+   V  K  KLE+  D I+  ++ ++           +    
Sbjct: 1   MKVPPEITYRDVPKNAAIESLVQEKITKLERVCDHISSCHIAIEKIHDRPRRGSPYRVRL 60

Query: 53  TLHV-NGGEIHASAE--GQDMY----AAIDGLIDKLARQLTKHKDKLK 93
            + V    E+ A +    ++ Y      I     K  RQL +   + +
Sbjct: 61  DITVPPSHELVAESNPGEENQYVELDTVIRDAFQKAERQLRELSRQQR 108


>UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhizobiales
          RepID=A9CX73_9RHIZ
          Length = 181

 Score = 60.7 bits (147), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 10 VEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GGEIHASAEG 67
          +EI E+ R  +    +  + +YFD     +V ++       +D  +H++ G  +HA+ E 
Sbjct: 1  MEIGESFRTRIDDHVSGAVRKYFDGGFSSHVTVEKSGSRFQADCKIHLDTGVVLHATGEA 60

Query: 68 QDMYAAIDGLIDKLA 82
          QD   A D   +++ 
Sbjct: 61 QDPQPAFDAAAERIE 75


>UniRef50_UPI00016C56FB hypothetical protein GobsU_19047 n=1 Tax=Gemmata obscuriglobus
          UQM 2246 RepID=UPI00016C56FB
          Length = 112

 Score = 59.2 bits (143), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVN 57
          MQ+ ++  + ++ + +++ +  K  KL  +F R+  + + + + +      + +      
Sbjct: 1  MQVTVSVRHGQLGDDIQQQLKEKGEKLLHFFSRLTMIEITVDLHRTHDGNMSVEVRATAE 60

Query: 58 G-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             E   S   +D+ AA +     + +Q+T +K+K++ H
Sbjct: 61 HKHEFVGSDHAEDVLAAFNKAAAHVKQQVTHYKEKIQDH 99


>UniRef50_Q21KB8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Gammaproteobacteria RepID=Q21KB8_SACD2
          Length = 105

 Score = 58.8 bits (142), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 5   ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHVNG 58
           +   +++ + AL + +  K  KL +Y D I    VVL      K +   + +   + + G
Sbjct: 7   VVYRDLDTSPALNDVIYKKMEKLHRYSDSIIHSKVVLDSPHNQKHKGKLYRASIEIGLKG 66

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             +  S +  +++ A+        R++ +   K +
Sbjct: 67  HPLTVSQDAPNVHIAVRDAFAAAERKIKEDNSKRR 101


>UniRef50_D2MK58 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria
           sp. WGA-A3 RepID=D2MK58_9BACT
          Length = 110

 Score = 58.8 bits (142), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHV 56
           M L I   NV +T   ++ +  +   L+  +D I    + L            ++A + +
Sbjct: 1   MDLKIDSRNVGMTPRWKQEIQDRVTTLQTEYDNITHARITLTKNPHHKKGDNNAEALIVL 60

Query: 57  ---NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                  + A  E +    AI         ++ K ++K   +
Sbjct: 61  NLPPRHTVTARKEAKSFEEAIRSAFKAAMTEVKKFREKPNSY 102


>UniRef50_Q2IHD0 Putative sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Anaeromyxobacter RepID=Q2IHD0_ANADE
          Length = 167

 Score = 58.4 bits (141), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDR-INQVYVVL-----KVEKVTHTSDAT 53
           M+L I  +++ +   L  F+     + L +  D   +++ V L     K   V      +
Sbjct: 34  MKLVIHSHHLTLPPDLGAFLRKHVTRPLARLQDDSASELSVHLGDARRKKGGVDQECRLS 93

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + G   +H  +   D++ A+    ++L R + +  +K++  
Sbjct: 94  FRMPGARTLHVESVQDDLHTALLDAAERLKRLVKRELEKMRSR 136


>UniRef50_Q2RYB7 Ribosomal subunit interface protein, putative n=1
           Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB7_RHORT
          Length = 126

 Score = 58.0 bits (140), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----------VEKVTH 48
           MQ+   I    ++ ++A+ E +  K AKLEQ+   I    VV++                
Sbjct: 1   MQIPVQIVFRGIDHSDAVEERIREKAAKLEQFHKNITACRVVVEMHHKNTSHVHKRGEPF 60

Query: 49  TSDATLHVNGGEIHASAE---------GQDMYAAIDGLIDKLARQLTKHKDKLK 93
                + V G +++A +           +D+  A+    + + RQL    ++ +
Sbjct: 61  LISVQVSVPGEDLNAVSSHGKDADLKAHEDVGIALRDAFESMERQLRDIAERKR 114


>UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 Tax=Clostridium difficile
          QCD-32g58 RepID=UPI00006DCB56
          Length = 57

 Score = 57.6 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 30/49 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT 49
          MQ+ ++G  +++T+ ++ +V  K ++LE+Y D  ++V V +  +K    
Sbjct: 1  MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQK 49


>UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Opitutus terrae PB90-1 RepID=B1ZU16_OPITP
          Length = 131

 Score = 57.6 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57
          +L I G  + +T+ALR  +  K  +L ++  RI +V V L  E         +   + ++
Sbjct: 12 KLVIRGIRLWLTDALRSTIETKAERLFRHEPRIIRVRVDLDREHRNGVALFVAKGRIELH 71

Query: 58 GGEIHASAEGQDMYAAIDGLI 78
          G ++ AS    D Y +ID LI
Sbjct: 72 GPDLLASVVSNDAYKSIDWLI 92


>UniRef50_Q1IU45 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis
           Ellin345 RepID=Q1IU45_ACIBL
          Length = 348

 Score = 57.2 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQ----YFDRINQVY--VVLKVEKVTHTSDATL 54
           M ++I+   +E T  +   V     KLE+    +   +  ++  V+ K  +        L
Sbjct: 1   MNVHISYKGLEKTPDVESTVKLHLKKLERRLQVFRPELVSLHGSVLQKSPRAGFVVALNL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +   +I A     +   A+    D L  Q+++HK  L+ 
Sbjct: 61  KLPTTDIAAEQANPNSAVAVKAAFDSLIGQISRHKGALRN 100


>UniRef50_A6CY25 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
          RepID=A6CY25_9VIBR
          Length = 105

 Score = 57.2 bits (138), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRIN--QVYVVLKVEKVTHTSDATLHVNGGE 60
          + IT  +V+IT +++  +  KFA ++ +F  I+  + +++          + T+H++  +
Sbjct: 1  MQITSMHVDITPSMKTLIEEKFAHIQGHFHSIDQEKCHIIYHESYRLFEVEFTVHLDHEQ 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                      A+      +   L KHK KL 
Sbjct: 61 FFTKKSNATFAIALQEATQAVLHSLEKHKTKLS 93


>UniRef50_A1WVP9 Ribosomal subunit interface protein, putative n=2
           Tax=Ectothiorhodospiraceae RepID=A1WVP9_HALHL
          Length = 115

 Score = 56.5 bits (136), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 1   MQLNIT-GNNVEITEALREFVTAKFAKLEQYF-DRINQVYVVLK-----VEKVTHTSDAT 53
           MQ+ I  G  V I++AL E +      +++ F +++ ++ V  +        V       
Sbjct: 1   MQIQINPGAGVHISDALEESIREALGAVDRRFGEQLTRIEVHFQDINGPKGGVNKHCRIE 60

Query: 54  LHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               G + + A     D Y A  G   KL R L     KL  
Sbjct: 61  ARPRGLDPVLAENTADDAYDAARGAAKKLERVLDGRLGKLAD 102


>UniRef50_Q1D2Z7 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1D2Z7_MYXXD
          Length = 121

 Score = 56.1 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ I   N+ +TE LR +   +    L++  DR+ +V V L+        V       L
Sbjct: 1   MRVEIRARNIPLTETLRTYAERRVRFALDRLSDRVKEVVVRLEDANGPKGGVDQVCRVAL 60

Query: 55  HV-NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + +G E+   +   ++ AAID  +++ +  +T+   + ++
Sbjct: 61  RLEHGRELAIESSDTNLLAAIDRTLERASNAVTRAVGRAQR 101


>UniRef50_D0MIH4 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Rhodothermus marinus DSM 4252 RepID=D0MIH4_RHOM4
          Length = 109

 Score = 56.1 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL-----KVEKVTHTSDATLHVN 57
                 N E+T+AL+  V  +  KL +    I  V V +           + +   ++  
Sbjct: 8   FEYYSENHELTDALKAKVEQRIQKLAKKHHDITGVSVAIQRVEHTHTPHAYRARVVVYHK 67

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              + A+     +  ++   +D + RQ+ + + KL++
Sbjct: 68  PENVVATEVAPTVEESLLRALDSVERQVREQRRKLRE 104


>UniRef50_D2QHG3 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74
           RepID=D2QHG3_9SPHI
          Length = 113

 Score = 56.1 bits (135), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVE----KVTHTSDATLHV 56
           +L+I   N+ + +A R+ +     KL +Y+   +    V L+VE        +      V
Sbjct: 11  RLSINAVNITVDDAFRDRIAQALVKLRRYYSGDLITAEVFLRVEAHGGPNDKSLRIVYGV 70

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87
            G    A  EG +    +  +  KL  QL +
Sbjct: 71  PGTGAFAEEEGDNWDTMLHTVTGKLKHQLER 101


>UniRef50_Q11EM9 Cold-shock protein, DNA-binding n=1 Tax=Chelativorans sp. BNC1
           RepID=Q11EM9_MESSB
          Length = 194

 Score = 55.7 bits (134), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 18/113 (15%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDA 52
           MQ+   I  +  E ++   + + A+  KL+ Y DRI    V +                 
Sbjct: 1   MQVPLQIAFHKAEKSDWAEQEIRARVDKLQTYHDRIIGCRVTVDQRARNVEGTLPPVVRI 60

Query: 53  TLHVNG--GEIHASA--------EGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + + G    I A          +  D+  AI+   +   R+L + K+     
Sbjct: 61  EISLPGTAPVIVAYEPDRLQQKYQSPDLGNAINDAFNLAERRLAQIKEARDGR 113


>UniRef50_A6W1F5 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Marinomonas sp. MWYL1 RepID=A6W1F5_MARMS
          Length = 137

 Score = 55.7 bits (134), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ +    + +T++L+ +V  + +  L   +D I QV V L                 +
Sbjct: 1   MRIKVKARRLALTKSLKAYVKRRLSFALNSRYDNIQQVIVTLTDVNGPKGGEDKHCQVLV 60

Query: 55  HVNGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +NG  E+  S +  DMY+AID    + +R +T+  ++L+
Sbjct: 61  KINGQKEVVISEQQADMYSAIDSAAGRTSRTVTRRIERLQ 100


>UniRef50_Q1PZB4 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1PZB4_9BACT
          Length = 176

 Score = 55.3 bits (133), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLHV 56
           L I   + ++TEA +  +     KL+  +DRI +  VV++  +        +     + +
Sbjct: 5   LEIVARDFDLTEANKADIHKYAEKLDAAYDRIIRCRVVVEALRHREHKGLFYNVKVVVTI 64

Query: 57  NGGEIHASAE-GQDMYAAIDGLIDKLARQLT----KHKDKLKQH 95
            G E+    +  +D + A+    + + R+L     +   K+K H
Sbjct: 65  PGTELVIKRKPNEDFHLAVKDSFNAMRRKLEDFVVQRSGKVKHH 108


>UniRef50_C3XBE7 Predicted protein n=2 Tax=Oxalobacter formigenes RepID=C3XBE7_OXAFO
          Length = 119

 Score = 54.9 bits (132), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M   I    ++  EA++E++  +    L    + I+ + + L                 L
Sbjct: 1   MAPTIITKGIKAGEAIQEYIQERMDTMLSHTQNSIDYIMIRLSDTNRIKSGFKKRCLIQL 60

Query: 55  HVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + G   I  +    DM +A D    + +R L K   K K+
Sbjct: 61  SLPGMSPIVVTEFAADMKSAFDSATRRASRLLNKTLSKAKE 101


>UniRef50_C6QHD0 Cold-shock DNA-binding domain protein n=1 Tax=Hyphomicrobium
           denitrificans ATCC 51888 RepID=C6QHD0_9RHIZ
          Length = 121

 Score = 54.9 bits (132), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           + I+  ++E + A+   V  +  KLEQ+  R+    VV+  E+  H           L V
Sbjct: 5   VQISFEHLEHSGAIEHRVREQLEKLEQFCGRLTAARVVVAREQRRHHKGDNYSVRLLLSV 64

Query: 57  NGGEIHA-------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G E  A       +   +D++  I        R+L     K ++ 
Sbjct: 65  PGAEDIAITHNTTDTGRHEDIHVVISDAFAAARRRLQDFVGKRQRR 110


>UniRef50_B2IF06 Cold-shock DNA-binding domain protein n=1 Tax=Beijerinckia indica
           subsp. indica ATCC 9039 RepID=B2IF06_BEII9
          Length = 187

 Score = 54.9 bits (132), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 1   MQLN--ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS----DATL 54
           M++   I       TE  R  +  K A LE+++DRI    VV+K     H +    +  +
Sbjct: 1   MEVQAQIDFQGFHPTEQQRALIEQKIAGLEEFYDRITACRVVMKAPSHHHRTGGQYEVNI 60

Query: 55  HV---NGGEIHAS------AEGQDMYAAIDGLIDKLARQL----TKHKDKLKQH 95
           H+    G E+             D   AI+    +  R+L       + ++K H
Sbjct: 61  HLVLPEGREVVVERTPPEDERFSDPMFAINDAFSRARRRLQDEVRHIRGQVKVH 114


>UniRef50_C3RQU3 Predicted protein n=1 Tax=Mollicutes bacterium D7
           RepID=C3RQU3_9MOLU
          Length = 163

 Score = 54.6 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT--LHVNG 58
           M ++I    + +TEA+ E++  +F KL +Y   ++   V + V+           +    
Sbjct: 44  MDISIRCK-ITMTEAMNEYLMNRFKKLNRY-KVLDNSRVSILVKPHEAAVKIQTLISNKY 101

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G    +    D Y A+D  IDK+  +L K K+
Sbjct: 102 GNFKVTTMASDYYTAVDLHIDKVKNKLCKIKE 133


>UniRef50_A5ETX8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Bradyrhizobium sp. BTAi1 RepID=A5ETX8_BRASB
          Length = 307

 Score = 54.6 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLHVN 57
           NI   N+     LRE + +K   LEQ+  R     V L +E      K  H +  TL + 
Sbjct: 15  NIVTRNLHGHPFLREKLYSKIRALEQHLQRFPPDAVHLLIELDRHARKEEHRAVLTLRLP 74

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              +HA    +    A+   +  L ++L   K+K+++
Sbjct: 75  SHILHADKSAKSAITALTHAVKALLQELKALKEKMRE 111


>UniRef50_D2QBL1 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM
          74 RepID=D2QBL1_9SPHI
          Length = 98

 Score = 54.6 bits (131), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57
          ++++       T  L E V ++  ++ ++   I      L+ E             L + 
Sbjct: 9  KIDLQTVGFNETTELVEQVESELRRIMRFRSDIVAADFYLREEGSNPTENKLVRWRLGIP 68

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQ 84
          G ++ A   G    A +    DKL RQ
Sbjct: 69 GNDLFAEGTGPSWAAGLRAAGDKLRRQ 95


>UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp.
          128-5-R1-1 RepID=A8V5D5_9AQUI
          Length = 158

 Score = 54.6 bits (131), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 32 DRINQVYVVLKVEKVTHT--SDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLT 86
          +    V V    EK  H    D  ++ N   GG IHA  E  D+Y AID ++D++ RQL 
Sbjct: 8  EDSVNVRVTYDFEKHRHRNRVDIDIYFNTPGGGVIHAWEESNDLYTAIDFVVDEVERQLV 67

Query: 87 KHKDKL 92
          + K + 
Sbjct: 68 RLKARR 73


>UniRef50_A4VJU5 Ribosomal subunit interface protein, putative n=5 Tax=Pseudomonas
           RepID=A4VJU5_PSEU5
          Length = 104

 Score = 54.2 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 1   MQLNITGNN-VEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           MQ+ +  N+ + +T  L E + A    +L+++ D + +V V L  E              
Sbjct: 1   MQVLVNSNHSISVTADLEERIKATVETELDRFDDHLTRVEVHLNDENSNKSGPHDKRCQM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              V G + I A+ + + +  AI+G  +KL   L+   DKL +H
Sbjct: 61  EARVKGHDPISATHKAETLDLAINGAAEKLNHALSHALDKLNRH 104


>UniRef50_A4VGA6 Ribosomal subunit interface protein, putative n=2 Tax=Pseudomonas
           RepID=A4VGA6_PSEU5
          Length = 140

 Score = 54.2 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDAT 53
           M + +  N++  +  L E+V      +LE++ D + +V V +  E               
Sbjct: 1   MHVQVNSNHIPGSVELHEWVGTTVEDRLERFDDFLTRVEVHISDENAQKAGADDKRCQIE 60

Query: 54  LHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
               G + +  + + + +  A+DG  DK+   L     KL   
Sbjct: 61  ARPKGHQAVSVTHKAESLQLAVDGAADKMQHALENLMGKLDTR 103


>UniRef50_B4D6Y7 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y7_9BACT
          Length = 372

 Score = 54.2 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 4   NITGNNVEITEALREFVTAKFAKLE----QYFDRINQVYVVLKV--EKVTHTSDATLHVN 57
           +I   ++     +RE +  K A L      +      + VVL    +K  +    TL + 
Sbjct: 13  HIVNRHLHPGVTVREKLAEKIAALSQLLVHFPPDSIHLQVVLDKMAKKGLYEVRLTLRLP 72

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              +HA   G D+   I+  ++ L R++   K  L+
Sbjct: 73  SNILHAEKTGTDLLVTINTAVNALKREVMSLKADLR 108


>UniRef50_A4XWR8 Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina ymp
           RepID=A4XWR8_PSEMY
          Length = 133

 Score = 53.8 bits (129), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 1   MQLNITG-NNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVE------KVTHTSDA 52
           MQ+ +   N++  + AL + V  +   KL+++ D + ++ V    E              
Sbjct: 30  MQVMVNSDNHIHGSAALEDRVRGRVTDKLKRFEDHLTRIEVHFNDENSHKSGGQDKRCQL 89

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              + G + +  S     +  A++G IDKL   L ++  K +
Sbjct: 90  EARLKGRDPVSVSHNADQLEQALEGAIDKLGTVLERNIGKQR 131


>UniRef50_C5CAR2 Ribosomal subunit interface protein n=1 Tax=Micrococcus luteus
          NCTC 2665 RepID=C5CAR2_MICLC
          Length = 225

 Score = 53.4 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M ++    N+ ++E+ R+ V  +  +L++  +  + + V +               + T+
Sbjct: 3  MDVSYIARNISLSESFRDHVVERTERLQRLAEGADTLEVRVTKVSHRKHSDEAVRVELTV 62

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
                + A A   D  AA D    +L
Sbjct: 63 RGPRDVVRAEAAADDELAAFDKAAARL 89


>UniRef50_UPI00016A5540 putative RNA polymerase, sigma 28 subunit, FliA/WhiG family protein
           n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A5540
          Length = 379

 Score = 52.6 bits (126), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 1   MQLNITGNNVE--ITEALREFVTAKFAK-----LEQYFDRINQVYVVLKVEKVT--HTSD 51
           M+  I+  N+       L+  +     +     L  +   + ++   L+       + + 
Sbjct: 1   MKTAISYRNISELARPDLKGLIGNLLDRHLQPHLSHFPAELVRLRATLERSGHRSLYRAR 60

Query: 52  ATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             L +    +  S E  ++  A++    +L RQL +H   L+
Sbjct: 61  LRLGLPSTTLTCSDESPELGKALERSFAELERQLERHIAHLR 102


>UniRef50_A6CVQ4 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CVQ4_9VIBR
          Length = 109

 Score = 52.2 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK--VTHTSDATLHVNG 58
           M ++    ++ ++E++R     K   L     +  +++V +   +    +  +  +H   
Sbjct: 1   MNIHFNTQSIVLSESMRSHCVTKADHLFAVHPQATEIFVSIIHHRSYGQYDVELKVHAEH 60

Query: 59  GEIHASAEGQDMY----AAIDGLIDKLARQLTKHKDKLKQH 95
                   G + Y     A   +  KL +Q TK K +L+ H
Sbjct: 61  QWCFVKHSGDEFYHVAAEAFSAMTHKLQKQKTKVKRELRDH 101


>UniRef50_C5B5J5 Putative uncharacterized protein n=4 Tax=Alphaproteobacteria
           RepID=C5B5J5_METEA
          Length = 390

 Score = 52.2 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 1   MQLNITGNNVE------ITEALREFVTAKFAKLEQYFDRINQVYVVLK--VEKVTHTSDA 52
           M +  +  N++        E + E V      L ++ + + ++ VV      K       
Sbjct: 1   MNVIRSFRNLDRHGQQRAPEVIEEEVRQLEPHLARFREDLVRLEVVASQTRGKTRIKVSL 60

Query: 53  TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            L +  G I A  +G ++   +      L  Q+ +H  +LK
Sbjct: 61  RLQLPSGVIAAREDGFEIEPVLRKAFADLRHQVDRHVARLK 101


>UniRef50_A5FK95 Putative uncharacterized protein n=2 Tax=Flavobacteriales
           RepID=A5FK95_FLAJ1
          Length = 104

 Score = 51.9 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEK------VTHTSDA 52
           M++ I T  N+E  + L ++ + +  K L ++ D+I ++ V    E              
Sbjct: 1   MKIQINTDKNIEGHQRLEKYFSEELEKGLARFEDKITRIEVHFGDENGEKFSLNDKKCVL 60

Query: 53  TLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       I  +   + +  A +G + K+ + LT   +KLK H
Sbjct: 61  EVRTAKLQPITVTEHAETLEKAFNGALSKIKKSLTTTFEKLKAH 104


>UniRef50_Q73N60 Ribosomal subunit interface protein, putative n=2 Tax=Treponema
          RepID=Q73N60_TREDE
          Length = 96

 Score = 51.9 bits (124), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59
          M +NI      + E  ++++  KF ++E   + I  +   +K++K     D T++   GG
Sbjct: 1  MNINIQAVKFTMDEDQKKYLDQKFKRIEYADNLITDIQCFIKLDK-KFIYDTTINFRWGG 59

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            H S E  +  A ++ ++D   +++ K KDK+++
Sbjct: 60 TAHVSTENYEFEAGVNKMMDIADQKVKKEKDKVQE 94


>UniRef50_A7HIK3 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HIK3_ANADF
          Length = 134

 Score = 51.5 bits (123), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQ-YFDRINQVYVVL-----KVEKVTHTSDAT 53
           M+L+I  N++ +   +  F+     + L + Y D   ++ V       K   V      +
Sbjct: 1   MKLSIHANHLSLPNDVMRFIEKHVTRPLARVYDDSAAELAVHFDDSRRKKGGVDQACRLS 60

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             + G   +H  +   D+Y A+    ++L R + K  DK++
Sbjct: 61  FRMPGARTVHVESVEDDLYKALLDASERLKRHVRKQVDKMR 101


>UniRef50_B4CWD9 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus
          Ellin428 RepID=B4CWD9_9BACT
          Length = 116

 Score = 51.5 bits (123), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHVNGGEIHA 63
          +  +EA+ E V  +  KL +YFDRI    VV++                 L V G E+  
Sbjct: 1  MAPSEAVTERVQKETEKLGKYFDRITSCSVVIEAPQKHHHHGEPFHVRIELGVPGKELVV 60

Query: 64 SAE 66
          + +
Sbjct: 61 TQK 63


>UniRef50_Q5P2J4 Putative uncharacterized protein n=4 Tax=Rhodocyclaceae
           RepID=Q5P2J4_AZOSE
          Length = 117

 Score = 51.1 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++++  + +E    LR++V  +    + ++ D+I    + +                 L
Sbjct: 1   MRIDLQCSGLEAPSGLRDYVARRMRFAIGRFRDQIQWARIKVADVNGPRGGADKRCVVQL 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +    ++  S  G D    +D   +++++ L +   +L+
Sbjct: 61  RLRNCPDVIFSVTGTDARPLVDLAAERVSQVLVRRLARLR 100


>UniRef50_C6WEC1 Putative uncharacterized protein n=1 Tax=Actinosynnema mirum DSM
          43827 RepID=C6WEC1_ACTMD
          Length = 98

 Score = 50.7 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVLKVEKVTH-TSDATLHVNG 58
          MQL++      + EA RE+   K   L +Y         V L  +      +  TLHV+G
Sbjct: 10 MQLSLARR---VPEAAREYAGVKIGCLGKYAPGEVPFAMVRLSYDGPRRLVAHGTLHVDG 66

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
            ++A A  +     +D L D+L  QL K   
Sbjct: 67 HAVNADAGAETFIEVVDLLQDRLKAQLVKMHG 98


>UniRef50_C5CTR1 Ribosomal subunit interface protein, putative n=1 Tax=Variovorax
           paradoxus S110 RepID=C5CTR1_VARPS
          Length = 119

 Score = 50.7 bits (121), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTH--------TS 50
           MQ+ + T N +   +AL  +  A+   +L ++ D + +V V L  E              
Sbjct: 1   MQIQVNTSNGINNKDALERWADAEIKQQLGRFVDDVTRVEVHLSDENHDKAGGGDKCCVM 60

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +A L  +   +  +     +  A  G  DKL R L     +L  H
Sbjct: 61  EARL-AHHQPLAVTQHATTLDEAFRGAADKLKRLLDNTLGRLNNH 104


>UniRef50_Q1NMP5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=delta
          proteobacterium MLMS-1 RepID=Q1NMP5_9DELT
          Length = 118

 Score = 50.3 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVL----KVEKVTHTSDATLH 55
          M+L + G N++I ++ ++ + ++ A+L ++   +   + V +      +   +       
Sbjct: 1  MELQVEGRNLDIRQSWQDKIESEKARLLRHHAGLVHHLRVSIEETASHKSGGYEVRLVAA 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          V G  +  + +G+ +   +    D L  QL + + K +
Sbjct: 61 VPGETVVVNRKGESVRTLLGEAFDNLGLQLKELQRKRR 98


>UniRef50_B2UIV4 Ribosomal subunit interface protein n=2 Tax=Ralstonia pickettii
           RepID=B2UIV4_RALPJ
          Length = 105

 Score = 49.9 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
           ++I+   +  ++A+ E V     +L++    + +  V L      + +      +  +  
Sbjct: 5   VDISFQGIPHSKAVEEAVIKHADRLKRIRADLMRCRVSLAVGAKHQHQGKPFDVNVHVFT 64

Query: 57  NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                I ++   +D Y A+      + R L +   K   
Sbjct: 65  PHQTHISSNTSNEDPYVALHEAFSHVERMLLEAGSKRSS 103


>UniRef50_Q1N2T1 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
           RepID=Q1N2T1_9GAMM
          Length = 136

 Score = 49.9 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ +    ++I+  L++++  +    L    D+I +V VVL                 L
Sbjct: 1   MKIIVNVRRLKISAELKKYIKRRLQFALGSRSDQIQRVEVVLSDLNGPKGGEDKHCRMLL 60

Query: 55  HVNGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            + G  ++       +M A +D   ++ +  +TK  D+L+
Sbjct: 61  KLEGHQDVVIEDVDSEMQAVVDKAANRASLTVTKRLDRLR 100


>UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia RepID=B2S0F3_BORHD
          Length = 103

 Score = 49.9 bits (119), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVLKVEKVTHTSDATLHVN-G 58
          M+  I   N  ++ + ++F+  K  KL  +  + ++ + + +K E      DA LH N G
Sbjct: 6  MEPKIQAINYHLSNSTKDFIIKKLEKLGTHIKQNSESLKITIKKENDIFDIDAHLHFNWG 65

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
            IH   EG+++Y +I+ LI++L     K K+K
Sbjct: 66 KIIHIKEEGKELYHSIENLIERLQNTANKEKNK 98


>UniRef50_C1ZHK6 Putative uncharacterized protein n=1 Tax=Planctomyces limnophilus
           DSM 3776 RepID=C1ZHK6_PLALI
          Length = 117

 Score = 47.6 bits (113), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M  N+    + + + LREFV  K    L+++      V + L+                +
Sbjct: 1   MHTNLITRGLVLPQGLREFVDRKLEFALDRFQLSPADVEITLEDINGPRGGQDKRCRLRV 60

Query: 55  -HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +     +     G D+   +   +D++ + L K   K    
Sbjct: 61  GNTKRTRVLIEETGSDLQRVLSRTVDRMEQALAKLHRKHHSR 102


>UniRef50_B1ZS48 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1
          RepID=B1ZS48_OPITP
          Length = 120

 Score = 46.5 bits (110), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE---KVTHTSDATLHVN 57
          M+L++   +V  T++L  +V    + L      I++ +V L+ +      +     L V 
Sbjct: 1  MKLSLKHVHVRPTDSLDSWVEEGLSTLRPLL-AIDEAHVRLEHDAAASPAYRVTVHLVVP 59

Query: 58 GGEIHASAEGQDMYAAIDGLIDKL 81
          G ++ A A    +  A   ++ +L
Sbjct: 60 GPDLRADAVDHTLRTAFAKVLGEL 83


>UniRef50_D0SNV4 Ribosomal subunit interface protein n=4 Tax=Acinetobacter
           RepID=D0SNV4_ACIJU
          Length = 124

 Score = 46.5 bits (110), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           M + I T  N++ +E L  +V A+   + ++Y +RI    V +  E              
Sbjct: 1   MNIEIRTDKNIQGSERLISYVRAELTQEFQRYSERITHFSVHISDENGEKTGDHDKRCMI 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                G + +  + +  ++ A+I G IDKL R L    +K + H
Sbjct: 61  EARPAGMKPLAVTHKAANIDASIHGAIDKLKRSLEHLYEKKEHH 104


>UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus communis
          RepID=B9TBM2_RICCO
          Length = 58

 Score = 46.5 bits (110), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G  ++  +  QD+YAAID LIDKL RQ+ K+K K++ H
Sbjct: 3  GKTVYVESLSQDLYAAIDTLIDKLDRQVMKYKAKVQGH 40


>UniRef50_Q48ML3 Ribosomal subunit interface protein, putative n=6
           Tax=Pseudomonadaceae RepID=Q48ML3_PSE14
          Length = 142

 Score = 46.1 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 1   MQLNITG-NNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           MQ+ +   N++E +  L E+V       LE Y + + +V V ++ E              
Sbjct: 1   MQIQVNSDNHIESSIRLEEWVRTTVESTLEHYDENLTRVEVHIRDENGDKPGPHDIKCQM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                G + I  S +   +  A+DG   KL   L     KL+
Sbjct: 61  EARPKGHQPISVSHKADTVDQAVDGAAVKLDHALEHLFGKLR 102


>UniRef50_Q6APA9 Similar to cold-shock protein n=2 Tax=Desulfobulbaceae
          RepID=Q6APA9_DESPS
          Length = 176

 Score = 45.3 bits (107), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLK----VEKVTHTSDATLH 55
          M+L +   NV++ ++ +E +  +  KL +++   I  + V ++     ++  +       
Sbjct: 1  MELKVETRNVDLRKSWQEKIDTESEKLIRHYANFILHLRVAIEANTHHKEGGYEVRLVAS 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          V    +  +  G+ + A +    D LA QL + + K ++
Sbjct: 61 VPQDTVVVTRSGEVVRAVLTEAFDVLALQLKEIQRKKRK 99


>UniRef50_Q21YM4 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens
          T118 RepID=Q21YM4_RHOFD
          Length = 114

 Score = 43.8 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 1  MQLNI-TGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKV------THTSDA 52
          MQ+ I T +++E  EAL  + T +    L ++   + +V V L  E              
Sbjct: 1  MQIQINTDHHIEGHEALAAWATGEVKSGLSRFSASVTRVEVHLSDENGHKSGPDDKRCVM 60

Query: 53 TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQL 85
             V G + +  +     +Y  + G  +KL+R +
Sbjct: 61 EARVQGRQPLAVTHNAPSLYLTVTGATEKLSRLI 94


>UniRef50_B1C667 Putative uncharacterized protein n=1 Tax=Anaerofustis
          stercorihominis DSM 17244 RepID=B1C667_9FIRM
          Length = 173

 Score = 43.8 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 27 LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQL 85
          L++YF +  +  +++   +   T++ T+ V+   +      +D+  A D  I+KL  Q+
Sbjct: 28 LDKYFPKDPKANIMISEIRGLVTTEITVTVDSTFLRVEVSDRDVRNAADKAIEKLEAQI 86


>UniRef50_Q11UA1 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11UA1_CYTH3
          Length = 104

 Score = 43.4 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVE------KVTHTSDA 52
           M +   T  NV   E    ++++     L+++ + I ++ V L  E              
Sbjct: 1   MTIQFNTDKNVASNERTANYLSSMISDSLDRFSEHITRIEVHLSDENSSKEGGDDKRCVL 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + G +    +     +  A+ G IDKL   L K+ ++ + +
Sbjct: 61  EARMEGKKPFAVTNNADTIEKAVSGAIDKLTTTLEKNLERQRSY 104


>UniRef50_Q4KI21 Ribosomal subunit interface protein, putative n=2 Tax=Pseudomonas
          fluorescens RepID=Q4KI21_PSEF5
          Length = 119

 Score = 43.0 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 16 LREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTH------TSDATLHVNGGE-IHASAEG 67
          + E+V +     LE+Y + + +V V L+ E                   G + +  + + 
Sbjct: 1  MEEWVRSTVESTLERYEEDLTRVVVHLRDENGGKSGPDDMRCQLEARPKGHQPVSVTHKA 60

Query: 68 QDMYAAIDGLIDKLARQLTKHKDKLK 93
            +  A+DG   KL   L     KL+
Sbjct: 61 DTLEQALDGATVKLESALEHMFGKLR 86


>UniRef50_B4RFH3 Cold-shock DNA-binding domain protein n=1 Tax=Phenylobacterium
          zucineum HLK1 RepID=B4RFH3_PHEZH
          Length = 189

 Score = 43.0 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 1  MQL--NITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSD 51
          MQL   IT    +E +EAL+  +  +  KLE++ DRI    V +      +     +   
Sbjct: 1  MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVR 60

Query: 52 ATLHVNG 58
            +   G
Sbjct: 61 LQITAPG 67


>UniRef50_B8EK85 Cold-shock protein DNA-binding n=2 Tax=Beijerinckiaceae
           RepID=B8EK85_METSB
          Length = 209

 Score = 42.6 bits (100), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT---------SDAT 53
           L I   +++ ++AL + +  +  +LE  F RI    VV                   +  
Sbjct: 5   LQIVFRDIQHSDALAKLIEDRARRLESAFSRITGCRVVAGAAHGATKNTIPPLSLCVEVE 64

Query: 54  LHVNGGEIHASAEGQ---DMYAAIDGLIDKLARQLTKH----KDKLKQH 95
           +      I A AE +   +  A ++ + D   R+L +     KD +++H
Sbjct: 65  VPGR-PMIVAKAEAKRKGEQAALVNRVFDVAERRLEQLSELAKDNVRRH 112


>UniRef50_D0LQZ0 Putative uncharacterized protein n=1 Tax=Haliangium ochraceum DSM
           14365 RepID=D0LQZ0_HALO1
          Length = 128

 Score = 42.2 bits (99), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M + I    +E+++ LRE V  +    ++++ DR+ +V V L         V      ++
Sbjct: 1   MHIQIRTQKLEVSDGLRELVRRRLRFAMDRFGDRVQRVTVRLADLNGPRGGVDKHCRISV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                G +      + + A +   I++  R L +   +LK
Sbjct: 61  VTRSQGVVVVEGTDESLPAVVTRAIERAVRALKRANARLK 100


>UniRef50_B2UIT9 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii
          RepID=B2UIT9_RALPJ
          Length = 113

 Score = 41.8 bits (98), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHV 56
          L+I+  +   ++A+ + V  +   L ++   I +  V L                  +  
Sbjct: 5  LDISFRDFPYSKAIEDAVIEQANSLARFQAEIARCRVKLIQLPRQQTPIQSVRVHIDVMT 64

Query: 57 NGGE-IHASAEGQDMYAAIDGLIDKLARQLTK 87
               +   A G+D  AA+     ++   L +
Sbjct: 65 RHDSHLSGHASGEDARAALREAFREVEFALRR 96


>UniRef50_A9BQF4 Ribosomal subunit interface protein, putative n=9
           Tax=Comamonadaceae RepID=A9BQF4_DELAS
          Length = 126

 Score = 41.8 bits (98), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 1   MQLNITGNN-VEITEALREFVTAKF-AKLEQYFDRINQVYVVLK-------VEKVTHTSD 51
           MQ+ +  ++ ++  E+L ++   +  AKL ++ D + +V V L                 
Sbjct: 1   MQVQVHADDSIQGGESLAQWAQEEINAKLARFKDYVVRVEVFLTGVDALKTSGAPGKRCV 60

Query: 52  ATLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                NG   I  +AE + +  A +  I+KL R +     KLK 
Sbjct: 61  LETRANGRPPIAVNAEAEKVKDAFNAAIEKLKRAVETDLGKLKD 104


>UniRef50_Q12CA7 Ribosomal subunit interface protein, putative n=2 Tax=Polaromonas
           RepID=Q12CA7_POLSJ
          Length = 120

 Score = 41.8 bits (98), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 1   MQLNITGNN-VEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVT------HTSDA 52
           MQ+ +  N+ +   EA   + + +    L ++   I +V V +  +              
Sbjct: 1   MQVQVNSNHTIHTGEAFERWASTELNDSLSRFKGDITRVEVHMSDDTGDGAGAGSRRCVM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              ++  E +  +        A  G  DKL R +     KL+ 
Sbjct: 61  EARLSHHEPLSVNHHAPSQDEAFRGASDKLKRLIEHTLGKLRD 103


>UniRef50_B1ZSU6 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1
           RepID=B1ZSU6_OPITP
          Length = 119

 Score = 41.5 bits (97), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           ++ +   N E+ E +R     K   L +    I ++ + L+ +        + +   +  
Sbjct: 12  RVLVRAINFELDEPVRRATADKAVLLVRRHPLIEEICIELENDPTREAPHEYVAKGRIDF 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
            G  + +S  G D    ++ L+++L  QL K + +
Sbjct: 72  GGPALLSSVTGGDATGTLNYLLEQLEHQLRKQRLR 106


>UniRef50_UPI00016C6947 putative sigma 54 modulation protein n=1 Tax=Clostridium
          difficile QCD-76w55 RepID=UPI00016C6947
          Length = 173

 Score = 41.1 bits (96), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 1  MQLNITGNNV-EITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + I   +  EI++ +   +  K   LE +    + + + ++  K+++  +  L  N  
Sbjct: 1  MDIKIIKKHNKEISKDIELAIHQKLNFLEVFLKENDYIKITVEQNKLSYKIELLLEYNKK 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKH 88
           I  +    D +++++ + ++L R+L K 
Sbjct: 61 IIKMNEVSGDFFSSLEKITNRLKRKLYKI 89


>UniRef50_Q0C2I5 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium
          ATCC 15444 RepID=Q0C2I5_HYPNA
          Length = 107

 Score = 40.7 bits (95), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 1  MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHT-----SDAT 53
          M     TGN V+    + E    +F  +LE++  R++++ V ++    T        +A 
Sbjct: 1  MDFQFNTGNKVDGDARMDEHFETRFRERLERFEPRLSRIEVHVRDTDGTRRDGPDGIEAV 60

Query: 54 L---HVNGGEIHASAEGQDMYAAIDGLIDKLARQL 85
          +     NG  + AS +     AA++  + KL  +L
Sbjct: 61 IEARPYNGEPLTASDKAGTPEAAVNAALQKLVTRL 95


>UniRef50_D0CFJ2 Ribosomal subunit interface protein n=13 Tax=Acinetobacter
           RepID=D0CFJ2_ACIBA
          Length = 116

 Score = 40.7 bits (95), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTH------TSDA 52
           M + I T  N+  +E L  +V A+   + +++ +RI    V    E              
Sbjct: 1   MNIEIRTDKNIHNSERLITYVRAELTQEFQRHSERITHFSVHFSDENGDKGGDKDIHCMI 60

Query: 53  TLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
               +G   +    +  ++ A+I G I+KL R L    +K
Sbjct: 61  EARPSGLKPVAVHHKAGNIDASIHGAIEKLKRSLEHTFEK 100


>UniRef50_D2R4D6 Putative uncharacterized protein n=1 Tax=Pirellula staleyi DSM 6068
           RepID=D2R4D6_9PLAN
          Length = 117

 Score = 39.9 bits (93), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKV-----THTSDATL 54
           M++ I+     I++ L +F   +    L ++  RI QV V+L  E         T    +
Sbjct: 1   MRIVISNRRAAISKELYDFAERRVLFALSRFAPRIEQVLVLLTDENGPRGGIDQTCQLVI 60

Query: 55  HV-NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +  G +         +  A+    D  +R + +   K + 
Sbjct: 61  QLDRGEQFTIRQCEATVEEAVSRAADAASRMVGRSMAKRRD 101


>UniRef50_C4RPJ2 Putative uncharacterized protein n=2 Tax=Micromonospora
           RepID=C4RPJ2_9ACTO
          Length = 146

 Score = 39.9 bits (93), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 17  REFVTAKFA----KLEQYFDRINQVYVVLK-VEKVTHTSDATLHVNG-GEIHASAEGQDM 70
           R ++  +FA    +L  +     ++ V +K  E           + G  +I  ++  +D+
Sbjct: 25  RNWIAEQFATLDARLAGFHADATELEVSVKDREARGQKVTLECWIAGRQKIVTTSAEEDL 84

Query: 71  YAAIDGLIDKLARQLTKHKDKLKQH 95
           +AA++ + D L R+L   K + +  
Sbjct: 85  HAALNDVRDDLRRRLNDAKTRQEPR 109


>UniRef50_Q9Z7W7 Ribosomal protein S30AE n=5 Tax=Chlamydophila RepID=Q9Z7W7_CHLPN
          Length = 228

 Score = 39.5 bits (92), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG-- 59
            + IT     ++  L++ +  K   L      +  + VVL   K    ++  +  + G  
Sbjct: 22  HVEITTKAFRLSMPLKQLILEKSDHL----PPMETIRVVLTSHKDKLGTEVHVVASHGKE 77

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       + Y A+     K+     KH +K K  
Sbjct: 78  ILQTKVHNANPYTAVINAFKKIRTMANKHSNKRKDR 113


>UniRef50_B2UJI3 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii
           RepID=B2UJI3_RALPJ
          Length = 142

 Score = 39.5 bits (92), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLHV 56
           + I  +N+  ++A++  +T   ++L+ +   I +  + L  +      +        + +
Sbjct: 17  VEILFSNLPQSDAIKAAITRFASRLDGFPCDIRRFRICLASDNPERSARGPFLVHIEVDI 76

Query: 57  NGGEIHASAEGQ-DMYAAIDGLIDKLARQLT 86
            G  + A      D++ A+     ++  ++ 
Sbjct: 77  PGRALTADEASDVDVHVALLNAFREMRARVR 107


>UniRef50_A8M8Q2 CBS domain containing protein n=1 Tax=Caldivirga maquilingensis
           IC-167 RepID=A8M8Q2_CALMQ
          Length = 386

 Score = 39.1 bits (91), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 9   NVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVTHTSDATLHVNGGEIHASAEG 67
           N +    + + +     K+ +  + ++ +V +  +     +     L  +     A+AE 
Sbjct: 291 NNDAKPLIEKVINNHLEKISKLVNVVDFKVDIRARDSGKRYEVTVRLKDDKELHTATAED 350

Query: 68  QDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +D  +AI   +DK+ + + K+  K + 
Sbjct: 351 RDPVSAIREAMDKIMQSIIKNVSKARD 377


>UniRef50_A8M1R1 Putative uncharacterized protein n=2 Tax=Salinispora
           RepID=A8M1R1_SALAI
          Length = 129

 Score = 39.1 bits (91), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 25  AKLEQYFDRINQVYVVLK-VEKVTHTSDATLHVNG-GEIHASAEGQDMYAAIDGLIDKLA 82
           A+L  +     ++ V +K  E           + G  +I  ++  +D++AA++ + D L 
Sbjct: 37  ARLAGFHADATELEVSVKNRETRGQKVTLECWIAGRQKIVTTSAEEDLHAALNDVRDDLR 96

Query: 83  RQLTKHKDKLKQH 95
           R+L   K + +  
Sbjct: 97  RRLNDAKTRQEPR 109


>UniRef50_D2RTT7 CBS domain containing membrane protein n=12 Tax=Halobacteriaceae
           RepID=D2RTT7_9EURY
          Length = 385

 Score = 38.4 bits (89), Expect = 0.066,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 1   MQLNITGNNVEITEAL-REFVTAKFAKL-EQYFD-RINQVYVVLKVEKVTH-------TS 50
           M + IT  N+ + + + RE +      + ++Y D ++   +V    E             
Sbjct: 271 MDVQIT--NISMLDTITREGIVENIEDVVDKYQDMQVQHAHVRF-KEHQEKLRGTPLVHC 327

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
              L  N G+I  + EG     A    IDKL R + + K 
Sbjct: 328 QIRLRTNKGQIAGTGEGYGSENAFRVAIDKLERNVLEVKG 367


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=C...   113   2e-24
UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mari...   113   2e-24
UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=P...   111   5e-24
UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=...   111   5e-24
UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S3...   110   2e-23
UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal prot...   108   7e-23
UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_D...   108   8e-23
UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal prot...   107   9e-23
UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S3...   107   1e-22
UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cyst...   107   1e-22
UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella ...   107   1e-22
UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal prot...   107   1e-22
UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S3...   106   2e-22
UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio...   106   2e-22
UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clost...   106   2e-22
UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal prot...   106   2e-22
UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal prot...   106   3e-22
UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S3...   105   3e-22
UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S3...   105   4e-22
UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Be...   104   1e-21
UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation...   103   2e-21
UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S3...   102   3e-21
UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clo...   102   4e-21
UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphil...   101   5e-21
UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acid...   101   7e-21
UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bac...   101   8e-21
UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mits...   101   8e-21
UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococ...   100   1e-20
UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfo...   100   1e-20
UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=c...   100   2e-20
UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein...   100   2e-20
UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S3...   100   2e-20
UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gamm...   100   2e-20
UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S3...   100   2e-20
UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2...    99   3e-20
UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S3...    99   5e-20
UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammap...    99   5e-20
UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora e...    98   6e-20
UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candida...    98   6e-20
UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Ther...    97   2e-19
UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal prot...    97   2e-19
UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S3...    97   2e-19
UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammapr...    97   2e-19
UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomo...    96   3e-19
UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caul...    96   3e-19
UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neis...    96   4e-19
UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachl...    96   4e-19
UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal prot...    96   4e-19
UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinom...    96   4e-19
UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S3...    96   4e-19
UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria...    95   4e-19
UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribo...    95   5e-19
UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Copr...    95   6e-19
UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal prot...    95   6e-19
UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal fami...    95   7e-19
UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus ...    95   7e-19
UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_...    95   8e-19
UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium...    95   9e-19
UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=P...    95   1e-18
UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S3...    93   2e-18
UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erys...    93   3e-18
UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacteri...    93   3e-18
UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dict...    92   4e-18
UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal prot...    92   4e-18
UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteob...    92   4e-18
UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal prot...    92   5e-18
UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipe...    92   5e-18
UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli ...    92   8e-18
UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal pro...    91   9e-18
UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S3...    91   1e-17
UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacil...    91   1e-17
UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S3...    91   1e-17
UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes...    91   1e-17
UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonad...    90   2e-17
UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta...    90   2e-17
UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y...    90   2e-17
UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) ...    90   3e-17
UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal prot...    90   3e-17
UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacter...    89   3e-17
UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia...    89   4e-17
UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S3...    89   5e-17
UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation...    89   5e-17
UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostri...    89   5e-17
UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal prot...    89   5e-17
UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal prot...    88   7e-17
UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation...    88   8e-17
UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Fineg...    88   8e-17
UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S3...    88   8e-17
UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmic...    88   8e-17
UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S3...    88   1e-16
UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcin...    88   1e-16
UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S3...    87   2e-16
UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea s...    87   2e-16
UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal prot...    87   2e-16
UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2...    87   2e-16
UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Acti...    87   2e-16
UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax...    87   3e-16
UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella bu...    87   3e-16
UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=R...    86   3e-16
UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=R...    86   3e-16
UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostri...    86   3e-16
UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteri...    86   3e-16
UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation...    86   4e-16
UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S3...    86   4e-16
UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens ...    86   4e-16
UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S3...    86   4e-16
UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG...    86   4e-16
UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S3...    86   4e-16
UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibr...    86   4e-16
UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S3...    86   5e-16
UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Syne...    85   5e-16
UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S3...    85   7e-16
UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation p...    85   7e-16
UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S3...    85   1e-15
UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S3...    85   1e-15
UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=...    84   1e-15
UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S3...    84   1e-15
UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S3...    84   2e-15
UniRef50_P24694 Probable sigma(54) modulation protein (Fragment)...    84   2e-15
UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anae...    83   2e-15
UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal p...    83   2e-15
UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacter...    83   2e-15
UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium Re...    83   2e-15
UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associ...    83   2e-15
UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium...    83   2e-15
UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bact...    83   2e-15
UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bactero...    83   2e-15
UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flex...    83   2e-15
UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acid...    83   3e-15
UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S3...    83   3e-15
UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria Re...    83   3e-15
UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation...    83   3e-15
UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal pro...    83   3e-15
UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Euba...    83   3e-15
UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil...    83   3e-15
UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychro...    83   4e-15
UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax...    83   4e-15
UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostri...    83   4e-15
UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S3...    82   4e-15
UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S3...    82   5e-15
UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S3...    82   6e-15
UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S3...    82   6e-15
UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S3...    82   6e-15
UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=A...    82   6e-15
UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S3...    82   7e-15
UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S3...    82   8e-15
UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Gro...    82   8e-15
UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prev...    81   1e-14
UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S3...    81   1e-14
UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorob...    81   1e-14
UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candida...    80   2e-14
UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S3...    80   2e-14
UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neor...    80   2e-14
UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kyto...    80   2e-14
UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA     80   2e-14
UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidal...    80   3e-14
UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal prote...    80   3e-14
UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Pa...    80   3e-14
UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S3...    80   3e-14
UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bact...    79   3e-14
UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=...    79   4e-14
UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=M...    79   4e-14
UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal p...    79   5e-14
UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=...    79   5e-14
UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation...    79   5e-14
UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rick...    79   5e-14
UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Prop...    79   5e-14
UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Act...    79   5e-14
UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Meth...    78   7e-14
UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chl...    78   7e-14
UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S3...    78   8e-14
UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1...    78   8e-14
UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S3...    78   8e-14
UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S3...    78   9e-14
UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vi...    78   9e-14
UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira R...    78   1e-13
UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal pr...    78   1e-13
UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S3...    77   2e-13
UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonell...    77   2e-13
UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavob...    77   2e-13
UniRef50_A3U9H3 Site-specific recombinase, phage integrase famil...    77   3e-13
UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobac...    76   3e-13
UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=...    76   3e-13
UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistip...    76   3e-13
UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associ...    76   3e-13
UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colw...    76   4e-13
UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Sali...    76   4e-13
UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal pr...    76   4e-13
UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S3...    76   4e-13
UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S3...    76   4e-13
UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Camp...    76   5e-13
UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magneto...    75   5e-13
UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Ro...    75   5e-13
UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verr...    75   6e-13
UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chi...    75   7e-13
UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S3...    75   7e-13
UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S3...    75   9e-13
UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammapr...    75   9e-13
UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M6...    75   1e-12
UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=...    75   1e-12
UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation...    74   1e-12
UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella bu...    74   1e-12
UniRef50_A2TTF7 Site-specific recombinase, phage integrase famil...    74   1e-12
UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostri...    74   1e-12
UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation...    74   1e-12
UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S3...    74   1e-12
UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Ther...    73   2e-12
UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation ...    73   2e-12
UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavoba...    73   2e-12
UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bactero...    73   3e-12
UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S3...    73   3e-12
UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Ta...    73   4e-12
UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lu...    72   4e-12
UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S3...    72   6e-12
UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacte...    71   9e-12
UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum ...    71   1e-11
UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus t...    71   1e-11
UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=p...    70   2e-11
UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=ce...    70   2e-11
UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=...    70   3e-11
UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S3...    70   3e-11
UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1...    69   4e-11
UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S3...    69   5e-11
UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S3...    69   5e-11
UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwen...    68   7e-11
UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Act...    68   7e-11
UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rho...    68   1e-10
UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=...    68   1e-10
UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia muc...    68   1e-10
UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S3...    68   1e-10
UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylo...    68   1e-10
UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal prot...    68   1e-10
UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntroph...    68   1e-10
UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S3...    68   1e-10
UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azo...    67   1e-10
UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ost...    67   1e-10
UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavoba...    67   2e-10
UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Bla...    67   2e-10
UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S3...    67   2e-10
UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S3...    67   2e-10
UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroh...    67   2e-10
UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia p...    66   3e-10
UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal p...    66   3e-10
UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cyst...    66   3e-10
UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reineke...    66   3e-10
UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Ac...    66   3e-10
UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S3...    66   3e-10
UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal p...    66   4e-10
UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplas...    65   5e-10
UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal pro...    65   7e-10
UniRef50_A5IBA4 Sigma 54 modulation protein YhbH n=4 Tax=Legione...    65   7e-10
UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisp...    65   7e-10
UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax...    65   1e-09
UniRef50_B4UF98 Cold-shock DNA-binding domain protein n=4 Tax=An...    65   1e-09
UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiropl...    64   1e-09
UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verr...    64   1e-09
UniRef50_Q11G12 Sigma 54 modulation protein/ribosomal protein S3...    64   2e-09
UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S3...    63   3e-09
UniRef50_B4WI97 Putative uncharacterized protein n=1 Tax=Synecho...    63   3e-09
UniRef50_A4CQ98 Sigma-54 modulation protein n=1 Tax=Robiginitale...    63   4e-09
UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Or...    63   4e-09
UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S3...    62   5e-09
UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spiroso...    62   5e-09
UniRef50_A0LCJ5 Putative sigma 54 modulation protein/ribosomal p...    61   7e-09
UniRef50_B8HME4 Cold-shock DNA-binding domain protein n=8 Tax=Cy...    61   9e-09
UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhiz...    61   1e-08
UniRef50_Q21KB8 Putative sigma 54 modulation protein/ribosomal p...    60   3e-08
UniRef50_UPI00016C56FB hypothetical protein GobsU_19047 n=1 Tax=...    60   3e-08
UniRef50_D2MK58 Putative uncharacterized protein n=1 Tax=Candida...    60   3e-08
UniRef50_Q2IHD0 Putative sigma 54 modulation protein/ribosomal p...    59   4e-08
UniRef50_Q2RYB7 Ribosomal subunit interface protein, putative n=...    59   5e-08
UniRef50_A1WVP9 Ribosomal subunit interface protein, putative n=...    58   7e-08
UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 T...    58   1e-07
UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S3...    58   1e-07
UniRef50_A6CY25 Putative uncharacterized protein n=1 Tax=Vibrio ...    58   1e-07
UniRef50_A4VGA6 Ribosomal subunit interface protein, putative n=...    57   2e-07
UniRef50_Q11EM9 Cold-shock protein, DNA-binding n=1 Tax=Chelativ...    57   2e-07
UniRef50_Q1IU45 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib...    57   2e-07
UniRef50_Q1D2Z7 Putative uncharacterized protein n=1 Tax=Myxococ...    57   2e-07
UniRef50_D0MIH4 Putative sigma 54 modulation protein/ribosomal p...    57   2e-07
UniRef50_D2QHG3 Putative uncharacterized protein n=1 Tax=Spiroso...    57   2e-07
UniRef50_A4VJU5 Ribosomal subunit interface protein, putative n=...    56   3e-07
UniRef50_A6W1F5 Putative sigma 54 modulation protein/ribosomal p...    56   4e-07
UniRef50_C3XBE7 Predicted protein n=2 Tax=Oxalobacter formigenes...    56   4e-07
UniRef50_A4XWR8 Putative uncharacterized protein n=1 Tax=Pseudom...    56   5e-07
UniRef50_A5ETX8 Putative sigma 54 modulation protein/ribosomal p...    55   5e-07
UniRef50_C6QHD0 Cold-shock DNA-binding domain protein n=1 Tax=Hy...    55   5e-07
UniRef50_Q1PZB4 Putative uncharacterized protein n=1 Tax=Candida...    55   6e-07
UniRef50_B4D6Y7 Putative sigma 54 modulation protein/ribosomal p...    55   6e-07
UniRef50_D2QBL1 Putative uncharacterized protein n=1 Tax=Spiroso...    55   6e-07
UniRef50_C3RQU3 Predicted protein n=1 Tax=Mollicutes bacterium D...    55   7e-07
UniRef50_B2IF06 Cold-shock DNA-binding domain protein n=1 Tax=Be...    55   1e-06
UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydroge...    54   1e-06
UniRef50_A5FK95 Putative uncharacterized protein n=2 Tax=Flavoba...    54   2e-06
UniRef50_C5CAR2 Ribosomal subunit interface protein n=1 Tax=Micr...    54   2e-06
UniRef50_Q1NMP5 Sigma 54 modulation protein/ribosomal protein S3...    53   2e-06
UniRef50_A6CVQ4 Putative uncharacterized protein n=1 Tax=Vibrio ...    53   3e-06
UniRef50_UPI00016A5540 putative RNA polymerase, sigma 28 subunit...    53   4e-06
UniRef50_C5B5J5 Putative uncharacterized protein n=4 Tax=Alphapr...    53   4e-06
UniRef50_B4CWD9 Putative uncharacterized protein n=1 Tax=Chthoni...    52   5e-06
UniRef50_Q73N60 Ribosomal subunit interface protein, putative n=...    52   5e-06
UniRef50_C5CTR1 Ribosomal subunit interface protein, putative n=...    52   5e-06
UniRef50_A7HIK3 Putative sigma 54 modulation protein/ribosomal p...    52   6e-06
UniRef50_Q5P2J4 Putative uncharacterized protein n=4 Tax=Rhodocy...    52   7e-06
UniRef50_D0SNV4 Ribosomal subunit interface protein n=4 Tax=Acin...    51   1e-05
UniRef50_Q1N2T1 Putative uncharacterized protein n=1 Tax=Bermane...    51   1e-05
UniRef50_Q48ML3 Ribosomal subunit interface protein, putative n=...    51   1e-05
UniRef50_C6WEC1 Putative uncharacterized protein n=1 Tax=Actinos...    51   1e-05
UniRef50_C1ZHK6 Putative uncharacterized protein n=1 Tax=Plancto...    51   1e-05
UniRef50_Q6APA9 Similar to cold-shock protein n=2 Tax=Desulfobul...    50   2e-05
UniRef50_B2UIV4 Ribosomal subunit interface protein n=2 Tax=Rals...    50   2e-05
UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia R...    50   2e-05
UniRef50_Q21YM4 Putative uncharacterized protein n=1 Tax=Rhodofe...    48   1e-04
UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus...    47   2e-04
UniRef50_B1ZS48 Putative uncharacterized protein n=1 Tax=Opitutu...    46   2e-04
UniRef50_B1C667 Putative uncharacterized protein n=1 Tax=Anaerof...    44   0.002

Sequences not found previously or not previously below threshold:

UniRef50_Q4KI21 Ribosomal subunit interface protein, putative n=...    46   3e-04
UniRef50_Q11UA1 Putative uncharacterized protein n=1 Tax=Cytopha...    46   4e-04
UniRef50_D0CFJ2 Ribosomal subunit interface protein n=13 Tax=Aci...    45   0.001
UniRef50_Q12CA7 Ribosomal subunit interface protein, putative n=...    44   0.001
UniRef50_B4RFH3 Cold-shock DNA-binding domain protein n=1 Tax=Ph...    43   0.002
UniRef50_A9BQF4 Ribosomal subunit interface protein, putative n=...    43   0.002
UniRef50_D0LQZ0 Putative uncharacterized protein n=1 Tax=Haliang...    43   0.003
UniRef50_B8EK85 Cold-shock protein DNA-binding n=2 Tax=Beijerinc...    43   0.004
UniRef50_B2UIT9 Putative uncharacterized protein n=2 Tax=Ralston...    42   0.005
UniRef50_Q0C2I5 Putative uncharacterized protein n=1 Tax=Hyphomo...    41   0.008
UniRef50_UPI00016C6947 putative sigma 54 modulation protein n=1 ...    41   0.010
UniRef50_C4RPJ2 Putative uncharacterized protein n=2 Tax=Micromo...    41   0.010
UniRef50_B1ZSU6 Putative uncharacterized protein n=1 Tax=Opitutu...    41   0.012
UniRef50_D2R4D6 Putative uncharacterized protein n=1 Tax=Pirellu...    41   0.016
UniRef50_A4WZ74 Putative uncharacterized protein n=2 Tax=Bacteri...    40   0.017
UniRef50_A8M1R1 Putative uncharacterized protein n=2 Tax=Salinis...    40   0.020
UniRef50_B2UJI3 Putative uncharacterized protein n=2 Tax=Ralston...    40   0.029
UniRef50_A8M8Q2 CBS domain containing protein n=1 Tax=Caldivirga...    40   0.031
UniRef50_Q9Z7W7 Ribosomal protein S30AE n=5 Tax=Chlamydophila Re...    40   0.033
UniRef50_A8FWF6 Putative uncharacterized protein n=4 Tax=Bacteri...    39   0.047
UniRef50_D2RTT7 CBS domain containing membrane protein n=12 Tax=...    39   0.053

>UniRef50_Q97F93 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Clostridiales
          RepID=Q97F93_CLOAB
          Length = 174

 Score =  113 bits (284), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+L ++G N+E+TE LRE V  + +KLE+YF    + +V L VEK     + T+  NG  
Sbjct: 1  MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEVEAHVTLSVEKNRQIVEVTIPFNGVI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       DMYA+ID + DKL RQ+ K K KL++ 
Sbjct: 61 LRGEETNNDMYASIDIVGDKLERQVRKQKTKLERR 95


>UniRef50_Q0EWV9 Ribosomal subunit interface protein n=1 Tax=Mariprofundus
           ferrooxydans PV-1 RepID=Q0EWV9_9PROT
          Length = 212

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 65/95 (68%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           MQ++ITG +VE+TE ++ +VT K   L+  FD +  V+VVL VEK     + ++  NG  
Sbjct: 26  MQVSITGRHVELTEPMKAYVTDKLQHLKHSFDHVLDVHVVLSVEKFRQRCEVSMQANGIN 85

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           IH S E +DMYA+IDG+IDK+ RQL +++ KL +H
Sbjct: 86  IHGSDETEDMYASIDGVIDKINRQLKRYRSKLHRH 120


>UniRef50_P0A147 Probable sigma(54) modulation protein n=32 Tax=Proteobacteria
          RepID=RP5M_PSEPK
          Length = 102

 Score =  111 bits (280), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 71/94 (75%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NI+G +VE+T+ LR++V  K A++E +FD+I  V V++KVEK+    +ATL + GGE
Sbjct: 1  MQVNISGQHVEVTQPLRDYVLEKLARVESHFDKITNVQVIMKVEKLQQKVEATLQIPGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          + A+AE +DMYAAID L DKL RQL KHK+K + 
Sbjct: 61 VVANAEHEDMYAAIDALADKLDRQLKKHKEKQQS 94


>UniRef50_P26983 Probable sigma(54) modulation protein n=165 Tax=cellular
          organisms RepID=RP5M_SALTY
          Length = 95

 Score =  111 bits (280), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 90/95 (94%), Positives = 93/95 (97%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQLNITG+NVEITEALREFVT KFAKLEQYF+RINQVYVVLKVEKVTH SDATLHVNGGE
Sbjct: 1  MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHASAEGQDMYAAIDGLIDKLARQLT+HKDKLKQH
Sbjct: 61 IHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH 95


>UniRef50_A3EWH8 Sigma 54 modulation protein/ribosomal protein S30EA n=3
          Tax=Leptospirillum RepID=A3EWH8_9BACT
          Length = 176

 Score =  110 bits (276), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 57/93 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ +TG ++EITEA+R  V  K   L++      +  V+L VEK     + TLH NG  
Sbjct: 1  MQITLTGRHMEITEAIRAKVQEKMELLDRVAPENCRADVILGVEKFRQKVEVTLHANGRL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          IHA +   D+YA++D  +DKL RQL + K+K++
Sbjct: 61 IHAESVTNDLYASLDLAVDKLERQLVRFKEKIR 93


>UniRef50_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=10
          Tax=Clostridiales RepID=Q0B0B5_SYNWW
          Length = 181

 Score =  108 bits (270), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 57/92 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+  I G N+EIT+AL+++ T + +KLE+Y D + +  V L +E   H  + T+ +NG  
Sbjct: 1  MKFIIRGRNIEITDALKDYTTKRLSKLEKYIDDVKEAQVALSIEGEDHKVEVTIPLNGII 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
          +       DMY++ID + +KL +Q+ K+K +L
Sbjct: 61 LRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRL 92


>UniRef50_Q9RVE7 Protein DR_1082 n=3 Tax=Deinococcus RepID=UA82_DEIRA
          Length = 191

 Score =  108 bits (270), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 1  MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATL 54
          MQ+  ++G NVE+TE +RE+V  K ++L++Y D+I    V L V      +  +  +  L
Sbjct: 1  MQIYQLSGRNVEVTEPMREYVEEKLSRLDRYTDQITDARVTLTVRDVRNNERRNRVEVQL 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +V GG I A     DMYAAID   D L RQL K K +
Sbjct: 61 NVPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTR 97


>UniRef50_Q0ADR1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6
          Tax=Proteobacteria RepID=Q0ADR1_NITEC
          Length = 111

 Score =  107 bits (269), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/91 (49%), Positives = 65/91 (71%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M LN+TGN+V IT A+R++VT+K  +  ++FD I  + V L V+K+   ++AT+H+ G E
Sbjct: 1  MNLNLTGNHVAITPAMRDYVTSKIERSTRHFDNIMAINVTLSVDKLKQKAEATVHLPGRE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I   A+  DMYA+ID L DKLARQ+ KHK+K
Sbjct: 61 IFVEADSTDMYASIDSLADKLARQILKHKEK 91


>UniRef50_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=11
          Tax=Desulfuromonadales RepID=B5EEZ7_GEOBB
          Length = 182

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ  +T  ++E ++AL+ +   K  ++++Y D    V V L VEK+ H ++ T+   G  
Sbjct: 1  MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I A+ E  DMYA+ID + DK+ RQL + K+++K H
Sbjct: 61 IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH 95


>UniRef50_Q1DDE8 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae
          RepID=Q1DDE8_MYXXD
          Length = 221

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 56/95 (58%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ NIT      +++L+E+   K  ++ +  DR  + +VVL +E+  H +D T+H     
Sbjct: 1  MQFNITFRQFGASDSLKEYAREKVERVNRLLDRAGEAHVVLSLERHLHHADITIHSGAWV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +    +  DMYA+ID  +DK+ RQL +++DKLK H
Sbjct: 61 LRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKSH 95


>UniRef50_B0TYD3 Sigma54 modulation protein n=17 Tax=Francisella
          RepID=B0TYD3_FRAP2
          Length = 102

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG +VE+T+A++ +V  K  K+  YFD I    V+L VEK    ++A + V G E
Sbjct: 1  MNIQITGRHVEVTDAIKNYVNEKIGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            A AE +D+YAAID L DKLARQ+ KHK+KL+ 
Sbjct: 61 FVAKAEDKDLYAAIDMLEDKLARQIKKHKNKLRD 94


>UniRef50_A0LJZ9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Deltaproteobacteria RepID=A0LJZ9_SYNFM
          Length = 180

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 60/95 (63%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+N+T  ++E ++ LR +   K +++++Y D     +VVLKVEK  H ++ T+  NG  
Sbjct: 1  MQINVTFRHIEPSDPLRAYAEEKISRVKKYLDEPVDAHVVLKVEKFRHIAEVTIDANGLR 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I+ + E  DMY+AID L D L  Q+ K K+K+++ 
Sbjct: 61 INGAEETDDMYSAIDKLADTLEGQVKKGKEKVRRR 95


>UniRef50_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=12
          Tax=Clostridia RepID=B0K3A9_THEPX
          Length = 181

 Score =  106 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + ++G N + +T+ LR+ V    +KL +YF    +V  VL V+K  H ++ T+   G 
Sbjct: 1  MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFPEDTEVRTVLSVQKNNHIAEITIPFKGI 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             A     DMY +ID ++DK+ +Q+ KHK KLK  
Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNR 96


>UniRef50_C1SGY6 SSU ribosomal protein S30P n=1 Tax=Denitrovibrio acetiphilus DSM
          12809 RepID=C1SGY6_9BACT
          Length = 177

 Score =  106 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 53/85 (62%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  N+E+T+A+R++   K +KLE+YFD I    V+L+V+K  H  +  +   G  
Sbjct: 1  MNIQITARNIELTDAIRDYAEKKVSKLEKYFDYITDANVLLEVQKNVHIVEVLVSAKGVF 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQL 85
          +    + +D+YA+ID  +DK+ +QL
Sbjct: 61 MKGLEKSEDLYASIDLAVDKIEKQL 85


>UniRef50_C1I442 30S ribosomal protein S30AE family n=1 Tax=Clostridium sp.
          7_2_43FAA RepID=C1I442_9CLOT
          Length = 178

 Score =  106 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++++   N   T AL+E +  K +K+++YFD   +    L V+K     + T+  NG  
Sbjct: 1  MRVSVIAKNTTATPALKEMIEKKLSKVKRYFDPEVEAKTTLSVQKNKQKVEITIPFNGII 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    +DMY +ID ++ KL RQ+ K + KL + 
Sbjct: 61 LRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRR 95


>UniRef50_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=12
           Tax=Firmicutes RepID=Q2RLX7_MOOTA
          Length = 190

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 59/94 (62%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M+L I G N+ +T+ALR+++  +  K+E+Y D ++++ V L V +  H  + T+ +NG  
Sbjct: 16  MELIIRGKNLPVTDALRQYIAKRLGKIERYLDGVDEIQVNLAVTRDKHVVEVTIPLNGYI 75

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +       DMY ++D +++KL +Q+ K+K +L +
Sbjct: 76  LRGEEATGDMYGSVDLVVEKLEKQIAKYKTRLNK 109


>UniRef50_Q0A6G4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8
          Tax=Gammaproteobacteria RepID=Q0A6G4_ALHEH
          Length = 113

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/95 (48%), Positives = 70/95 (73%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ ITG++V++T+AL+ +V  KF +LE++FD +   +V+L VEK+   ++A L ++G  
Sbjct: 1  MQIQITGHHVDVTDALKAYVREKFQRLERHFDNVVDSHVILSVEKLRQKAEANLLISGNR 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +HA    +DMYAAIDG+IDKL RQL KHK+K+  H
Sbjct: 61 LHAETTDEDMYAAIDGMIDKLDRQLVKHKEKVTDH 95


>UniRef50_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=134
          Tax=Bacteria RepID=B8CYM6_HALOH
          Length = 184

 Score =  105 bits (264), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++   G N+++T AL+E+   K +KL +YFD    + ++ ++VEK  H  + T ++NG 
Sbjct: 1  MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKGRHIVEVTAYLNGL 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +    E QDMYA+IDG+++KL RQ+ K+K K+ +
Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTKINR 95


>UniRef50_A7HIE3 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Anaeromyxobacter RepID=A7HIE3_ANADF
          Length = 185

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NIT  ++E TEAL+  V  +   +++Y DR ++ + VL VE + H ++ T+      
Sbjct: 1  MQVNITFRHLEPTEALKSHVKGRVEHVQRYIDRPSEAHAVLHVENLDHHAEITVKAGRFL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  +A   DMYA+ID   DK+ RQL KHK+KL  H
Sbjct: 61 LRGTARSADMYASIDQAADKIERQLKKHKEKLTNH 95


>UniRef50_Q7W3J9 Probable sigma(54) modulation protein n=4 Tax=Betaproteobacteria
          RepID=Q7W3J9_BORPA
          Length = 112

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 66/95 (69%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L+I G ++++T A+RE+V  K A++ ++FD +    V+L VE + H ++ T+ + G +
Sbjct: 1  MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEPLRHKAEITMRLRGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IH  A  +++YAAID L+DK+ RQ+ KHKDK++ H
Sbjct: 61 IHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSH 95


>UniRef50_A1RNM6 SSU ribosomal protein S30P / sigma 54 modulation protein n=98
          Tax=Gammaproteobacteria RepID=A1RNM6_SHESW
          Length = 95

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 76/95 (80%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ + G+++EITE+LR +V  KF+KLE++F++I+ V+VVL VEK+   ++A +++ GGE
Sbjct: 1  MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A++E  DMYAAID LIDKL RQ+ KHK+KL +H
Sbjct: 61 VFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH 95


>UniRef50_D1V7P2 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Frankia
           sp. EuI1c RepID=D1V7P2_9ACTO
          Length = 283

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + + G +  + E  R  V  K AKLE+Y  ++ +V V L  E            + T+
Sbjct: 1   MDIVVKGRHTAVPERFRSHVETKLAKLERYDGKVIRVDVELSREPNKRMADVRERVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A   D Y+A+DG   KLA +L +  ++   H
Sbjct: 61  YTRGPVIRAEAAAADPYSALDGAAGKLAERLRRASERRTDH 101


>UniRef50_C9XLM7 Putative sigma 54 modulation protein n=8 Tax=Clostridium
          RepID=C9XLM7_CLODC
          Length = 187

 Score =  102 bits (255), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT-LHVNGG 59
          MQ+ ++G  +++T+ ++ +V  K ++LE+Y D  ++V V +  +K     + T + +NG 
Sbjct: 1  MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQ 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A     D+YAAID + DKL+RQ+ K+K K+K 
Sbjct: 61 IIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKD 95


>UniRef50_D1VUS0 Ribosome-associated factor Y n=1 Tax=Peptoniphilus lacrimalis
          315-B RepID=D1VUS0_9FIRM
          Length = 176

 Score =  101 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L + G N+++ + L+     KF+KL++YF    Q   V   +K     + T+ + G  
Sbjct: 1  MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    QDM+ +ID  +DKL RQ+ K+K +LK+ 
Sbjct: 61 LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKR 95


>UniRef50_D2RIZ4 Ribosomal subunit interface protein n=1 Tax=Acidaminococcus
          fermentans DSM 20731 RepID=D2RIZ4_ACIFE
          Length = 181

 Score =  101 bits (253), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G N+E+T+AL+++V  +   + + F  + ++  V++VEK  HT + T+  +G  
Sbjct: 1  MAVKVRGKNIEVTQALKDYVEKRVQTITKQFKTVGEITAVMRVEKGNHTVEITVPASGIV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A     +MYA+ID  ++K+ RQ+ K+K +L + 
Sbjct: 61 LRAQETSDNMYASIDQCVEKIERQIHKYKTRLMKR 95


>UniRef50_Q71WR7 Ribosomal subunit interface protein n=44 Tax=Bacilli
          RepID=Q71WR7_LISMF
          Length = 187

 Score =  101 bits (252), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV----EKVTHTSDATLHVN 57
          + NI G N+E+TE +R++V  K  KLE+YF       V + +    +K     + T+ + 
Sbjct: 3  KYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNA-KVEVTIPLP 61

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             + A     D+YA+ID ++DKL RQ+ KHK K+ +
Sbjct: 62 NLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNR 98


>UniRef50_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida
          DSM 20544 RepID=C9KNJ3_9FIRM
          Length = 181

 Score =  101 bits (252), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE-I 61
            + G N+EIT +LRE+V  +  K+ +YFD +  + V+L V K  H  + T+ + GG  +
Sbjct: 4  FTVRGKNIEITPSLREYVEKRVGKVTKYFDSVGDIKVLLTVSKGRHIVEVTVPIPGGILL 63

Query: 62 HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                 DMY +ID +++KL RQ+ K K KL + 
Sbjct: 64 RGEESTMDMYTSIDLVVEKLERQIHKQKTKLARR 97


>UniRef50_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21
          RepID=C0WCZ2_9FIRM
          Length = 180

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G N+E+T AL+++V  K   + + F  + ++  V+++E+  H  + T+  +G  
Sbjct: 1  MTVRVRGKNLEVTPALKDYVEKKVETITKQFKTVGEITAVMRIERNKHIVEITVPASGIV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A    ++MYA+ID  ++K+ RQ+ K+K +L + 
Sbjct: 61 LRAQEGSENMYASIDNCVEKIERQIHKYKTRLMKR 95


>UniRef50_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio
          yellowstonii DSM 11347 RepID=B5YI17_THEYD
          Length = 173

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 61/94 (64%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ I G N+++TEAL++++  +  K E++    ++  V +  EK TH  D  L V+G  
Sbjct: 1  MKITIRGKNIDVTEALKQYIEKRVTKFERFLTDTSEAIVTISTEKFTHKIDVLLKVDGHL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          I A  + +D+Y+A+D +++KL +Q+ K+K+K++ 
Sbjct: 61 IQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQN 94


>UniRef50_P28613 Probable sigma(54) modulation protein n=84 Tax=cellular organisms
           RepID=RP5M_RALEH
          Length = 116

 Score =  100 bits (250), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M   I+G++++IT  LRE+V  K  ++ ++FD++  V V+L V+          ++  LH
Sbjct: 1   MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLH 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + G +I   A  +D+YAAID L+DKL RQ+ ++KD+++ H
Sbjct: 61  LKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGH 100


>UniRef50_B0VJD6 Ribosome-associated, sigma 54 modulation protein (Modular
          protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans
          RepID=B0VJD6_9BACT
          Length = 178

 Score =  100 bits (250), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 58/95 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ IT  + E+T+A+R++V    +KL +YFD+I  ++ VL +E   +  + +LH     
Sbjct: 1  MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFS 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + + AE  DMY AID  ++K+  Q+ K KD++  H
Sbjct: 61 LQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDH 95


>UniRef50_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Alicyclobacillus acidocaldarius RepID=C8WT44_ALIAD
          Length = 180

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ--VYVVLKVEKVTHTSDATLHVNG 58
          M+  + G+N+ +T AL+++V  K A+L +YFDR     +YV + VE + H  + T+ VNG
Sbjct: 1  MKAQVHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLDHRVEMTVFVNG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              A  +  DMYA+ID   DKL  Q+ ++K+KL + 
Sbjct: 61 VIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRR 97


>UniRef50_B5JSL3 Ribosomal subunit interface protein n=6 Tax=Gammaproteobacteria
          RepID=B5JSL3_9GAMM
          Length = 117

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/97 (51%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-- 58
          M +N+TG+++++T+ALR++V  KF +LE++FD + Q++V+L  EK  H ++A +HV    
Sbjct: 1  MHINLTGHHLDLTDALRDYVNDKFTRLERHFDHVTQIHVILGPEKHQHKAEAKMHVPHVK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          GE+ A AE +DMYAAIDGL+DKL RQL KHK+KL  H
Sbjct: 61 GELFAHAEHEDMYAAIDGLVDKLDRQLLKHKEKLTDH 97


>UniRef50_A8TSN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=alpha
           proteobacterium BAL199 RepID=A8TSN7_9PROT
          Length = 202

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
           M++++ G  +++ + LR+ + +    +  +YF    +  V L  +     +D  +H+  G
Sbjct: 10  MKISVQGKQLDVGDTLRQRIESTIESITAKYFANPIEATVTLSRQGSEFRADVGVHIGKG 69

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + A     D YAA     +++ +QL ++K +L+ H
Sbjct: 70  ISVQAEGRNDDAYAAFGSAAERIEKQLRRYKRRLRDH 106


>UniRef50_C0QJ65 SmpA n=1 Tax=Desulfobacterium autotrophicum HRM2
          RepID=C0QJ65_DESAH
          Length = 179

 Score = 99.2 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 63/95 (66%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ ++T   ++ ++AL+ +V  K  + ++  +   +  VVL VEK+ H ++ TL  +  +
Sbjct: 1  MQTSVTFKQIDPSDALKSYVQKKVDRFDKMLESPAEANVVLSVEKIRHIAEITLVCDRLK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHA  E ++MY++ID L+DK+A Q+ K+KDK+++H
Sbjct: 61 IHAKEESENMYSSIDTLMDKVAGQIKKNKDKMRRH 95


>UniRef50_D0LNA7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Haliangium ochraceum DSM 14365 RepID=D0LNA7_HALO1
          Length = 207

 Score = 98.9 bits (246), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58
          MQ ++T    E TEAL+E+   +  ++++YF     V+VV+  E+   H  D T+ + NG
Sbjct: 1  MQFSVTFRQTEATEALKEYARDRMERIKKYFPDPISVHVVMSTERGYKHRVDVTMQLHNG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +      + M+++ID +  K+ RQ+ ++KDKL+ H
Sbjct: 61 LTVAGRETSESMHSSIDLVTAKIERQVRRYKDKLRTH 97


>UniRef50_P0AD51 Ribosome-associated inhibitor A n=162 Tax=Gammaproteobacteria
          RepID=RAIA_ECO57
          Length = 113

 Score = 98.9 bits (246), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 56/91 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +NIT   +EIT A+R+ V  + AKLE++   +   +++L  E     +DAT++   G 
Sbjct: 1  MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + AS + +DMY AI+ LI+KL RQL K + K
Sbjct: 61 LVASGKHEDMYTAINELINKLERQLNKLQHK 91


>UniRef50_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338
           RepID=A4FNI8_SACEN
          Length = 231

 Score = 98.5 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
           M + + G NVE+ +  R+ V  K  +LE+Y  +  +  V L  E+           + TL
Sbjct: 1   MDIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D YAA+D    KL  +L +  D+ K H
Sbjct: 61  KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVH 101


>UniRef50_Q6MED7 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia
           amoebophila UWE25 RepID=Q6MED7_PARUW
          Length = 211

 Score = 98.5 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 58/94 (61%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
            + ITG +VEIT++++ +   K +K+E++ DRI  V V++ ++K+ H  +  L     +I
Sbjct: 16  NVKITGRHVEITDSMKSYAMEKISKIERFMDRIIDVNVIMDIQKIDHKVEIILKAGHTKI 75

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A   DMYA+ID  I +L  Q+ ++K K++ H
Sbjct: 76  QSQAATPDMYASIDKAIARLEAQIRRYKSKIQDH 109


>UniRef50_Q5SIS0 Ribosomal subunit interface protein n=5 Tax=Thermaceae
          RepID=Q5SIS0_THET8
          Length = 186

 Score = 96.9 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 1  MQL-NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATL 54
          M +  + G N+EIT+A+R++V  K A+L++Y D      VVL +    H      ++  +
Sbjct: 1  MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           + GG +    E  D+YAAID  +D+L  Q+ + +++ 
Sbjct: 61 DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERR 98


>UniRef50_Q122P6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=8
           Tax=Proteobacteria RepID=Q122P6_POLSJ
          Length = 109

 Score = 96.5 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
           M L I+G+++E+T ALR +VT+K  ++ ++FD++  V V+L V+          ++  +H
Sbjct: 1   MNLTISGHHLEVTPALRGYVTSKLDRITRHFDQVVDVKVLLTVDNMKEKERRQRAECNVH 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G ++ A +   D+YAA+D L DKL RQ+ ++K K K H
Sbjct: 61  VKGRDLFAESSHADLYAAVDELTDKLDRQVGRYKTKTKDH 100


>UniRef50_B1LBB6 Sigma 54 modulation protein/ribosomal protein S30EA n=6
          Tax=Thermotogaceae RepID=B1LBB6_THESQ
          Length = 178

 Score = 96.5 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQ--YFDRINQVYVVLKVE-KVTHTSDATLHVN 57
          M+  ITG  VEI+EA++ ++  +  K+++  Y D +    V ++ + K  +     +++ 
Sbjct: 1  MEYRITGKGVEISEAIKNYLEKRLDKIDRVIYDDDLVSFNVRIEKDGKNQYVVKFNMNLK 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G  I+      D+Y AID   D L +Q+ + K++LK H
Sbjct: 61 GNIINVEERHPDIYTAIDFASDALEKQVKRLKERLKNH 98


>UniRef50_P71346 Ribosome-associated inhibitor A n=31 Tax=Gammaproteobacteria
          RepID=RAIA_HAEIN
          Length = 107

 Score = 96.5 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M LNIT   ++IT A+RE +  + AKL ++  ++   + VL       + +A++    G 
Sbjct: 1  MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + ASA   DMY AI+ + +KL RQL K + K +  
Sbjct: 61 LLASATSDDMYKAINEVEEKLERQLNKLQHKSESR 95


>UniRef50_Q0BX30 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium
          ATCC 15444 RepID=Q0BX30_HYPNA
          Length = 198

 Score = 96.2 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          MQ+ ITG ++E+ EALR  +       + +YF R     V +  +      D  +H+  G
Sbjct: 1  MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQGPFVEVDCNVHLPSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + +S +  D YAA++  ++K+ +++ ++K +LK H
Sbjct: 61 IVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH 97


>UniRef50_B4RCJ5 Ribosomal subunit interface protein n=6 Tax=Caulobacteraceae
           RepID=B4RCJ5_PHEZH
          Length = 222

 Score = 96.2 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
           M++ +TG +V++ EALR  V  + +  +E+YFDR     VV+  E      D  + +  G
Sbjct: 13  MEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASG 72

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            ++     G D + A D  + K+ +++ ++K +LK H
Sbjct: 73  QQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDH 109


>UniRef50_C6M3U2 Ribosomal subunit interface protein n=6 Tax=Neisseriaceae
          RepID=C6M3U2_NEISI
          Length = 104

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 59/91 (64%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L ITG N ++TEA++ +V+ K  ++ ++      V + L VEK+   ++A +H+ G +
Sbjct: 1  MNLKITGLNFDVTEAIKNYVSEKLERINRHAANAISVTITLSVEKLNQQAEADIHLAGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +H  A  QDMYAAID L+DKL R + KHK+K
Sbjct: 61 LHVEAVEQDMYAAIDVLMDKLDRAVLKHKEK 91


>UniRef50_D1R7C2 Putative uncharacterized protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R7C2_9CHLA
          Length = 212

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 57/94 (60%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
            + +TG +V +TEA++ +   K +K+++   RI  V + + ++K+ H  D  L V+  +I
Sbjct: 16  NITVTGRHVLVTEAMKNYAIEKVSKIDRLSHRIIDVIITMDIQKLEHRVDIVLKVDHIKI 75

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A   DMY +ID  +DKL RQL K+K +++ H
Sbjct: 76  KSHAVCDDMYVSIDKAVDKLERQLLKYKSRIRDH 109


>UniRef50_Q0ATI7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Hyphomonadaceae RepID=Q0ATI7_MARMM
          Length = 209

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + +    ++++ ALRE +  +    + +YF+R  + YV +  E      + ++H+  G
Sbjct: 1  MHIQVVSKGIDVSGALREQILGRVEDGVAKYFNRPGEAYVSISREGTGFRVECSVHLPSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A  E  D Y A +  +++L ++L ++K KLK H
Sbjct: 61 VMLQAHGEADDAYKAAENTMERLEKRLRRYKRKLKNH 97


>UniRef50_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus
           ATCC 17982 RepID=A7BEC8_9ACTO
          Length = 214

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + +   N EI    RE+V  K +K+ Q++ R  +V V L  E+           + T+
Sbjct: 1   MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A+  D YAA+D    KL  +L + +D++K H
Sbjct: 61  YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDH 101


>UniRef50_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=5
           Tax=Fusobacteriaceae RepID=C7N909_LEPBD
          Length = 106

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M++ I+G  ++IT+A++ +   K +++ +Y D I ++ VVL VE        H +D  + 
Sbjct: 1   MKIIISGKQLKITDAIKNYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVF 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +G +I   AE +D+YAAID L D+L RQ+ K+K++ K H
Sbjct: 61  ASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKERQKDH 100


>UniRef50_P47908 Light repressed protein A n=48 Tax=Cyanobacteria RepID=LRTA_SYNP2
          Length = 193

 Score = 95.4 bits (237), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI-NQVYVVLKVEKV-----THTSDATL 54
          M+L I GNN+ +TE++ ++V +K  K  ++F     +V V L V         H ++ T+
Sbjct: 1  MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + NG  I A    +++YA+ID + DK+ARQL K+K+K
Sbjct: 61 YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK 97


>UniRef50_UPI0000E87FF9 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Methylophilales bacterium HTCC2181
          RepID=UPI0000E87FF9
          Length = 104

 Score = 95.4 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 62/95 (65%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG++++IT A+  ++T+KF K+E +F ++  V   L VEK  H +++TLH+   +
Sbjct: 1  MNIIITGHHIKITPAIENYITSKFHKIESHFSQLINVKFTLSVEKNMHVAESTLHLPQQD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          IHA A   DMY AI+ LI KL  Q+ K+K+K   H
Sbjct: 61 IHAQANDTDMYHAIEMLIKKLDIQVIKYKEKHTNH 95


>UniRef50_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter
           proteolyticus DSM 5265 RepID=B5Y948_COPPD
          Length = 190

 Score = 95.0 bits (236), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57
           ++++ G N+E+T A+++++  K  ++ +YFD I  V VV++ E+         + TL  N
Sbjct: 8   KIDMVGKNIELTAAIKQYIEEKIGRVYRYFDPILGVKVVVEKERQAREPVFDVEVTLDAN 67

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           G  I A  E  D+YAAID   DKL   + + K+KL
Sbjct: 68  GRLIRAEVEDPDLYAAIDKAADKLESNIKRFKEKL 102


>UniRef50_Q28VX1 Sigma 54 modulation protein / SSU ribosomal protein S30P n=46
           Tax=Bacteria RepID=Q28VX1_JANSC
          Length = 235

 Score = 95.0 bits (236), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
           M+  I+G  +EI +AL+  V      + ++Y +R     VV          + T+H++ G
Sbjct: 45  MRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTG 104

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
               A A   ++YAA +   DKL +QL ++K +LK H
Sbjct: 105 LTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDH 141


>UniRef50_A5EVC1 Sigma-54 modulation protein/S30EA ribosomal family protein n=2
          Tax=Cardiobacteriaceae RepID=A5EVC1_DICNV
          Length = 96

 Score = 95.0 bits (236), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          MQ NITG +++I+ ALRE +     +LEQ +  I    V L++ K    ++ TL +    
Sbjct: 1  MQFNITGRHLDISPALREHIEKMLNRLEQTYQNITSAQVTLRIVKHEKIAETTLSIAASN 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +IHA    +DMYAAID L +KL +QL + K+KL++ 
Sbjct: 61 DIHAEGRHEDMYAAIDLLAEKLEKQLQRQKEKLEER 96


>UniRef50_Q2LSN2 Ribosome-associated factor Y n=1 Tax=Syntrophus aciditrophicus SB
           RepID=Q2LSN2_SYNAS
          Length = 209

 Score = 95.0 bits (236), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 56/95 (58%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M++++T  N E      ++V  +  +L +Y D    V+VVL VEK  + ++ ++  NG  
Sbjct: 31  MKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVAEISVMTNGLN 90

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +    E +DM+ AID  ++K+ RQL KHK+K++ +
Sbjct: 91  LIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGY 125


>UniRef50_Q8DKM6 LrtA protein n=7 Tax=Cyanobacteria RepID=Q8DKM6_THEEB
          Length = 209

 Score = 94.6 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-----HTSDATL 54
           M+L I G N++IT+ +R ++  K  +   +F  +  +V V L V +        T++ T+
Sbjct: 1   MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAPKQTAEVTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            VNG  I A    +++YA+ID + DK+AR+L K K+K + 
Sbjct: 61  FVNGSVIRAEESSENLYASIDLVADKIARKLRKLKEKRQD 100


>UniRef50_C9XIR4 Putative RNA-binding protein n=7 Tax=Clostridium
          RepID=C9XIR4_CLODC
          Length = 183

 Score = 94.6 bits (235), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATL-HVNGG 59
          M + I+G  +E+T+A++  +  K +KL+ Y      V V +   K     + T+  VNG 
Sbjct: 1  MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A    +++Y AID + DKL++QL K+K +L+ 
Sbjct: 61 IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQD 95


>UniRef50_A2C0K6 Light repressed protein A-like protein n=5 Tax=Prochlorococcus
           marinus RepID=A2C0K6_PROM1
          Length = 194

 Score = 94.6 bits (235), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQ-YFDRINQVYVVLKVEKVT----HTSDATLH 55
           M+L I G N+E+T +LR++   K  K    + + + +  V L V +       T++ T+ 
Sbjct: 1   MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPRVPQQTAEVTVF 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            NG  I A    +++YA+ID + +KLARQL K+K++   H
Sbjct: 61  ANGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSH 100


>UniRef50_A9BRS9 Sigma 54 modulation protein/ribosomal protein S30EA n=21
          Tax=Betaproteobacteria RepID=A9BRS9_DELAS
          Length = 119

 Score = 93.5 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
          M L I+G+++E+T +LR +V AK  ++ ++FD++  V V+L V           +  TL 
Sbjct: 1  MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLR 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          V G ++       D+YAA+D L DKL R + ++K + + 
Sbjct: 61 VKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQG 99


>UniRef50_C8P3U4 Ribosomal subunit interface protein n=2 Tax=Erysipelotrichaceae
          RepID=C8P3U4_ERYRH
          Length = 180

 Score = 93.1 bits (231), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M + I G NVEIT+A++E V  K   L +YF  D   +  VV+ V       + T+    
Sbjct: 1  MLVYIHGKNVEITDAMQEKVEEKLEFLHKYFEVDDSWRANVVVNVYPQGSKVEVTITSKI 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          G + A    +D YAA+D ++DKL  Q+ +HK K+ +
Sbjct: 61 GPLRAEVLHEDFYAALDRVVDKLEDQIRRHKTKISR 96


>UniRef50_C3WBJ3 Sigma(54) modulation protein n=5 Tax=Fusobacterium
          RepID=C3WBJ3_FUSMR
          Length = 183

 Score = 92.7 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----VEKVTHTSDATLHV 56
          M++ I G  + IT+A++ +   K  ++E+Y D I ++ + L          HT++   ++
Sbjct: 1  MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGIIELAINLSAVKLKTGNYHTAEVLAYL 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  + AS    D+YAAIDG+ D L  QL KHKDK++ 
Sbjct: 61 GGSTVKASCTDADLYAAIDGVSDVLEGQLKKHKDKIRT 98


>UniRef50_B5YF17 Ribosomal subunit interface protein n=2 Tax=Dictyoglomus
          RepID=B5YF17_DICT6
          Length = 179

 Score = 92.3 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
          MQ+N    NV IT+ L+++   K ++L ++FD I  + V+   E        H  + T+ 
Sbjct: 1  MQINYVSKNVNITDNLQQYAEKKLSRLSRFFDNIENIEVLFSEEDWKDGSKRHRVEVTIK 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           NG  I AS   QD   +ID ++DKL  QL + K+KL  
Sbjct: 61 ANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVD 99


>UniRef50_A5WCB7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3
           Tax=Psychrobacter RepID=A5WCB7_PSYWF
          Length = 132

 Score = 92.3 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 10/104 (9%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----------KVTHTS 50
           M ++ITG+++ IT+A+++ V  K +K+E++FD+I  + V+L ++          K  H +
Sbjct: 1   MNISITGHHITITDAMKDMVMDKLSKVERHFDQIQSIKVILSLDNHRTDASHSGKNNHKA 60

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +A + V G E+   +   DMY AI  + DKL RQ+ K+K ++ +
Sbjct: 61  EALMRVAGQEMFVQSYDDDMYKAIHEMADKLDRQVRKYKTRIDR 104


>UniRef50_A5CWW3 Sigma-54 modulation protein n=3 Tax=Gammaproteobacteria
          RepID=A5CWW3_VESOH
          Length = 102

 Score = 92.3 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 68/95 (71%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQLNI+G++++ITEA+++    K  K++ +F+++  + ++L+V+K    ++A +HV+G +
Sbjct: 1  MQLNISGHHLDITEAIKQHSLTKLNKIKNHFNQVININMILEVKKDVQKAEAIIHVSGAD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A AE  DMY +ID +++KL  Q+ KHK+KL  H
Sbjct: 61 LFAKAESFDMYNSIDQMVNKLDVQIRKHKEKLNNH 95


>UniRef50_A1SRN9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Psychromonas RepID=A1SRN9_PSYIN
          Length = 136

 Score = 92.3 bits (229), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ IT   + IT+ +R  V  +F KLE+    +   +V++  E      +AT++V   +
Sbjct: 1  MRIEITSKQITITDTMRTKVEERFEKLEKLQIPLITPHVIITKEPKGVKIEATINVPNDK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I A A+  D+Y AI  L  KL RQLTK+  K
Sbjct: 61 IFAHAQNDDLYVAIGQLFQKLERQLTKYLHK 91


>UniRef50_B9Y7S1 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae
          RepID=B9Y7S1_9FIRM
          Length = 178

 Score = 92.3 bits (229), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M+  I G NV ITEA+R+ +  K + L++Y   D   +  VV++   +T   + T+    
Sbjct: 1  MKFEIVGKNVSITEAMRQKIERKLSFLDKYLLIDPETRARVVVRTYPLTQKIEVTIPTKV 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G +    E +D+YAAID  IDKL  Q+ + K +L + 
Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRR 97


>UniRef50_Q4L4H7 Uncharacterized protein SH2139 n=63 Tax=Bacilli RepID=Y2139_STAHJ
          Length = 192

 Score = 91.5 bits (227), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58
          +  I G+N+ IT+A+R ++  K  KLE+YF+ +      +KV   +  T   + T+ +  
Sbjct: 3  RFEIHGDNLTITDAIRNYIEDKIGKLERYFNDVPNAVAHVKVKTYQNSTTKIEVTIPLKN 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + A     D+YA ID +  KL RQ+ K+K ++ +
Sbjct: 63 VTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNR 98


>UniRef50_UPI0001BCF930 sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Mannheimia haemolytica serotype A2 str. BOVINE
           RepID=UPI0001BCF930
          Length = 129

 Score = 91.2 bits (226), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
           M LNI+   ++IT A+R  +  + AKLE+Y  ++   + +L  +  +   +AT+    G+
Sbjct: 36  MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQPNSFQVEATIGTPLGD 95

Query: 61  IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           + A AE +D+Y AI  +  KL  +L K K+K
Sbjct: 96  LVAKAEHEDLYTAIFDVKKKLEGRLIKLKEK 126


>UniRef50_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=5
           Tax=Coriobacteriaceae RepID=C8WMZ8_EGGLE
          Length = 191

 Score = 91.2 bits (226), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKVTH-----TSDATL 54
           M + +TG  + +T+ALRE+   K     +  D       +VL VEK          + TL
Sbjct: 1   MSITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPANPRPAVCEVTL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I      +DMYAAID    K+ RQL K+K K+   
Sbjct: 61  RTKGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDR 101


>UniRef50_Q5XAQ7 Ribosome-associated factor Y n=66 Tax=Lactobacillales
          RepID=RAFY_STRP6
          Length = 182

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 3/94 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTH-TSDATLHVNG 58
          + +I G N+E+TEA+R++V +K  K+E+YF  D+     V LKV +      + T+ ++ 
Sbjct: 3  KFSIRGENIEVTEAIRDYVESKLTKIEKYFAKDQEIDARVNLKVYRERSSKVEVTIPLDS 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            + A    QDMY +ID ++DK+ RQ+ K+K K+
Sbjct: 63 VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKI 96


>UniRef50_A1T5Y3 Sigma 54 modulation protein/ribosomal protein S30EA n=18
           Tax=Corynebacterineae RepID=A1T5Y3_MYCVP
          Length = 250

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLH 55
           ++ +TG NVE+ +  R +V  K ++LE++   +    V L  EK           + T  
Sbjct: 48  EVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQHVEITAK 107

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  +   A     YAA++  + KL  +L K KD+ K H
Sbjct: 108 GRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIH 147


>UniRef50_D2BPB3 Ribosome-associated factor Y n=15 Tax=Firmicutes
          RepID=D2BPB3_LACLK
          Length = 185

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTH-TSDATLHVNG 58
          + NI G NVE+T+A+R +V  K  KL++YF+       YV LKV        + TL    
Sbjct: 3  KFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKN 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + A    QDMY++ID + +KL RQ+ K+K ++ +
Sbjct: 63 VTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNR 98


>UniRef50_B0U6N0 Sigma-54 modulation protein n=19 Tax=Xanthomonadaceae
          RepID=B0U6N0_XYLFM
          Length = 105

 Score = 90.4 bits (224), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 56/95 (58%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +   G  +E+T ALRE+V  K  +L+++F    ++   L + K+ H   AT+++ G  
Sbjct: 1  MHIETYGQQIEVTPALREYVETKLKRLQRHFSHHCEIRTQLSMSKIDHHVTATINIPGRT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          ++A+A    MYAAID + DKL R + KHK+K   H
Sbjct: 61 LNANASASTMYAAIDLVADKLDRLILKHKEKKCDH 95


>UniRef50_B6BVF2 Ribosomal subunit interface protein n=1 Tax=beta proteobacterium
          KB13 RepID=B6BVF2_9PROT
          Length = 107

 Score = 90.0 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 57/95 (60%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ITG N+EITEAL   +  KF K+ ++F+ I  V  +LK E   H ++  LH+   E
Sbjct: 1  MDITITGQNIEITEALESLIHEKFNKITRHFENITDVKFILKTENHNHIAECKLHLMHSE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I + A G DMY  ID LI K+ RQ+ K K+K K H
Sbjct: 61 IFSDASGSDMYKVIDDLIHKIDRQVIKIKEKTKDH 95


>UniRef50_C2BSF1 Possible ribosome-associated inhibitor protein Y n=4
           Tax=Actinomycetaceae RepID=C2BSF1_9ACTO
          Length = 219

 Score = 90.0 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ +   N EI    RE++  K AK+EQ   R  +V V L  EK           + T+
Sbjct: 13  MEITVKARNAEIHPDFREYIEEKIAKVEQLAPRTQRVDVELTHEKNPRQADTAERIELTV 72

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D YAA+D    KL  +L + +D+ K H
Sbjct: 73  LGKGPVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDH 113


>UniRef50_A9G806 Probable sigma(54) modulation protein/sigma(54) modulation
          protein family n=1 Tax=Sorangium cellulosum 'So ce 56'
          RepID=A9G806_SORC5
          Length = 122

 Score = 89.6 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  ++  T+A++ +   K AKL+++  +     V L VE +TH +D  L      
Sbjct: 1  MNITITFRHMVGTDAVKNYAHEKVAKLQKFLRQAMTAQVTLSVEGLTHVADVRLSSGSLA 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           HA+  G+DMYA+ID + DKL RQ+   K 
Sbjct: 61 FHATERGEDMYASIDMVHDKLERQIRDGKG 90


>UniRef50_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD
          Length = 189

 Score = 89.6 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDR---INQVYVVLKVEKVTHTS-----DA 52
           M++ + G N+ +T++L  +   K  ++ ++FD    + +  V L  E+    +     + 
Sbjct: 1   MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELIHERNPSIAASEVAET 60

Query: 53  TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           TL +NG  + A    +DMYA+ID + DKL RQ+ +++ +    
Sbjct: 61  TLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDR 103


>UniRef50_A5TX76 Ribosome-associated protein Y n=9 Tax=Fusobacterium
          RepID=A5TX76_FUSNP
          Length = 181

 Score = 89.2 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----VEKVTHTSDATLHV 56
          M+L+I G  + +T+A+R++   K +K+E++ D I ++   L          H ++   ++
Sbjct: 1  MKLSIHGRKITLTDAIRKYAEEKISKVEKFNDSIIKIDATLAASKLKTGNAHVTEILAYL 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          +G  + A+A   D+YA+ID  +D +   L KHK+K  +
Sbjct: 61 SGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRSR 98


>UniRef50_C4K0H4 Ribosome-associated factor Y n=13 Tax=Rickettsia
          RepID=C4K0H4_RICPU
          Length = 192

 Score = 89.2 bits (221), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56
          M ++++G ++ I   L+E+   +  ++ ++YF  I  + +    E +    D  +     
Sbjct: 1  MIISVSGQHISIGNNLQEYSKERATQVVKKYFTDIINIDIHFSKEGINFKCDIIVKYGSG 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + ++    D+Y A D  + KL +QL K+K K K H
Sbjct: 61 KHNIVKSNDSCSDIYVAFDKAMSKLEKQLRKYKSKFKNH 99


>UniRef50_B4D5R5 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Verrucomicrobia RepID=B4D5R5_9BACT
          Length = 191

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGGEI 61
           + +TG +V +T+ ++++ T++   L   + RI + +V+L VEK  H ++  LH  N   I
Sbjct: 10  VKVTGRHVSVTDPIKDYATSRVEHLHLDYPRIIEAHVILDVEKHRHFAEIILHCTNHITI 69

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDK-LKQH 95
            AS E  DMYA+IDG+  K+A+Q+ K+K K L+ H
Sbjct: 70  EASHETDDMYASIDGVAAKIAQQMRKYKTKILRNH 104


>UniRef50_A1SVN1 SSU ribosomal protein S30P / sigma 54 modulation protein n=33
          Tax=Gammaproteobacteria RepID=A1SVN1_PSYIN
          Length = 122

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 49/93 (52%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++NI+G++V++T++++E +  KFAK+  +F  +  + +++  E      + + +  G  
Sbjct: 1  MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          I A      MY AI     KL   L   K +LK
Sbjct: 61 IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLK 93


>UniRef50_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50
          RepID=A7VDW4_9CLOT
          Length = 170

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (52%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQD 69
          +++TE L+  V  K +KLE+YF       V   VEK     + T+ + G  I A     D
Sbjct: 5  IDVTEGLKNAVYDKLSKLEKYFAEDAVAQVTFSVEKDRQKIEVTIPMKGHIIRAEQVSDD 64

Query: 70 MYAAIDGLIDKLARQLTKHKDKLKQ 94
          MY +ID +++ + RQ+ +HK KL  
Sbjct: 65 MYVSIDLVLEVIERQVNRHKKKLID 89


>UniRef50_A3QBU6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=21
          Tax=Shewanella RepID=A3QBU6_SHELP
          Length = 124

 Score = 88.8 bits (220), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62
          + IT  + E+T  +RE + ++  KL ++  ++   +V++  EK     +A++ +    + 
Sbjct: 2  IKITSKDFEVTTPIRERIESRLEKLSRHDVQLINPHVIIGQEKQGFKIEASVGIPSNTLF 61

Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          A A+ +D+YAAI+ +  KL +QL +   K
Sbjct: 62 AQAKDKDLYAAINAMGQKLEKQLNRLSHK 90


>UniRef50_Q07UJ4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=5
          Tax=Alphaproteobacteria RepID=Q07UJ4_RHOP5
          Length = 196

 Score = 88.1 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + ++G ++ + +ALR  V  +  + L +YFD     ++ L  +     +D  LH++ G
Sbjct: 1  MTIRVSGKSISVGDALRARVNERTDEVLRKYFDGQYSGHITLSKDGFGFRTDCALHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A +   D YA+ D  + ++ ++L ++K KLK  
Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSKLKDR 97


>UniRef50_Q310S7 SSU ribosomal protein S30P / sigma 54 modulation protein n=15
           Tax=Desulfovibrionales RepID=Q310S7_DESDG
          Length = 190

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVNG 58
           M +  T  N E ++ L+++   +F KL ++ ++    ++ V+L V+K  H ++      G
Sbjct: 11  MNIAFTFKNFEPSDHLKKYANRRFEKLGRFLNKSENLELQVLLSVDKFRHKAEVQCTGEG 70

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             + A  + +DMYA ID ++DKL  Q+ KH +K K
Sbjct: 71  LNLSAVEQSEDMYATIDLVLDKLEAQVKKHAEKTK 105


>UniRef50_B0S0M8 30S ribosomal protein S30AE family n=2 Tax=Finegoldia magna
          RepID=B0S0M8_FINM2
          Length = 179

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          M+LN    ++++T+ L++   +K  KL++YF    Q  VV K EK     + T+ +  G 
Sbjct: 1  MKLNYVTKDIKLTDDLKQMAESKLHKLDKYFHDEQQARVVFKKEKDKARVEVTMILDKGV 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + A    +D+  AID + D LARQ+ KHK KL++ 
Sbjct: 61 VLRAEESNEDIKTAIDKVEDALARQVRKHKTKLQKR 96


>UniRef50_B2KAZ3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Elusimicrobium minutum Pei191 RepID=B2KAZ3_ELUMP
          Length = 178

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NG 58
          M++ IT  N+++T A+++F   +  K+E+Y D++    + L V+K     +   +HV N 
Sbjct: 1  MEIQITAKNIKLTPAIKDFAQTRLDKMEKYVDQVVWAQIFLSVDKKINQKAQIIVHVGNK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A+A   D+Y AID    K   QL K K+K K  
Sbjct: 61 NTVDATAIESDLYKAIDAAAFKAEAQLKKIKEKTKSR 97


>UniRef50_Q49VV1 Uncharacterized protein SSP1964 n=127 Tax=Firmicutes
          RepID=Y1964_STAS1
          Length = 190

 Score = 88.1 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV---EKVTHTSDATLHVNG 58
          +  I G N+ IT+A+R ++  K  KLE+YF+ +      +KV   +      + T+ +  
Sbjct: 3  RFEIHGENLTITDAIRNYIEEKIGKLERYFNDVPNATAHVKVKTYQNSATKIEVTIPLKK 62

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
            + A     D+YA ID + +KL RQ+ K+K 
Sbjct: 63 VTLRAEERNDDLYAGIDLINNKLERQVRKYKT 94


>UniRef50_D0XRD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Brevundimonas subvibrioides ATCC 15264
           RepID=D0XRD3_9CAUL
          Length = 237

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQ-VYVVLKVEKVTHTSDATLHVN- 57
           MQ+ ++G +V++ EAL   ++ +  + + +YF+R  +   VV+  +      D  + +  
Sbjct: 19  MQVQVSGKHVDVGEALGSRISQELQEGVGKYFERGGENAEVVVSKDGYGFKVDCWVRLAS 78

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G  +  +  G D +AA    ++KL +++ ++K +LK H
Sbjct: 79  GQALVTTGLGGDAHAAFTDSLEKLEKRVRRYKRRLKDH 116


>UniRef50_A9WMP6 Ribosome-associated factor Y n=6 Tax=Micrococcineae
           RepID=A9WMP6_RENSM
          Length = 267

 Score = 87.7 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M+  I+G N+ +++  RE+ T K +KLE   +++ +V   +  +          T + T+
Sbjct: 26  MEFMISGRNLTVSDRFREYATEKISKLEHLTEKVQRVDAKVSKQPNARLADTKLTVELTV 85

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I A A   D +AA D   +KL  +L + KDK K H
Sbjct: 86  QGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLH 126


>UniRef50_C6QEK7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Hyphomicrobium denitrificans ATCC 51888
          RepID=C6QEK7_9RHIZ
          Length = 198

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          M + ITG N++   A + + + K    L +Y DR+   +V L+ E+    +  ++ + +G
Sbjct: 1  MTIQITGKNLDAGNAFQAYASDKIHTVLNKYLDRVPDGHVRLERERGFFKTSCSVRLTSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A  EG D Y ++D    +L  ++ ++K ++K H
Sbjct: 61 LLLEAHGEGDDAYTSVDSAAHRLESRVRRYKSRIKNH 97


>UniRef50_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LMC5_PICSI
          Length = 321

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L I G N ++T+A++ ++  K    ++++ + + +V V L +              + T
Sbjct: 89  RLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVGKGPKIRRCEVT 148

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G + A  E + +YA+ID + D + R+L K K+K   H
Sbjct: 149 LFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKDGGH 191


>UniRef50_A1SGL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
          Tax=Nocardioides sp. JS614 RepID=A1SGL6_NOCSJ
          Length = 207

 Score = 86.9 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV---- 56
          M++ +TG N E+T+  R  V  K  KLE++  RI +V V +K E+    +D  + +    
Sbjct: 1  MEVVVTGRNCELTDRFRSHVEEKLGKLEKHDHRIIRVNVEVKCERNPRQADRAVRLQLTA 60

Query: 57 --NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
             G  I A A   D  AA+D  +DK+A Q+ +  D
Sbjct: 61 LSKGPVIRAEAMAADKMAALDLALDKMAAQMRRASD 96


>UniRef50_Q9ZD30 PROBABLE SIGMA(54) MODULATION PROTEIN (YhbH) n=2 Tax=typhus group
          RepID=Q9ZD30_RICPR
          Length = 143

 Score = 86.5 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHV--- 56
          M ++++G ++ I   L+E+   K  + +++Y   I  + +    E +    D  +     
Sbjct: 1  MIISVSGQHISIGSNLQEYSKEKITQGIKKYLTDIINIDIHFSKEGINFKCDIIVKYGSG 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              I ++    D+Y A D  + KL +QL K K K K H
Sbjct: 61 KHNIIKSNDSCSDIYLAFDKAMSKLEKQLRKCKSKFKNH 99


>UniRef50_D1BCP0 Ribosomal subunit interface protein n=2 Tax=Actinomycetales
           RepID=D1BCP0_SANKS
          Length = 220

 Score = 86.5 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ + G + E+ +  R     K AK+EQ      +V V +  E            + T+
Sbjct: 1   MEIVVVGRHTEVADRFRRHAEDKLAKIEQLAPSAQRVDVEVTHENNPRQSGIRERVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  + A A   D + A+D  ++KL  +L +  D+ K  
Sbjct: 61  RDKGPVVRAEAAADDRFGALDLAMNKLTERLRRANDRRKNR 101


>UniRef50_A9NEZ2 Ribosome-associated protein, YfiA family n=1 Tax=Acholeplasma
          laidlawii PG-8A RepID=A9NEZ2_ACHLI
          Length = 185

 Score = 86.5 bits (214), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNN-VEITEALREFVTAKFAKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57
          M+  I G N    T+A++ +V  K  K+   FD   I+ V VVL+V K     + T+   
Sbjct: 1  MRYEIIGKNGFVATDAIKAYVVKKLDKIVNMFDVRVIDTVRVVLRVYKEYSKVEVTIPAP 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + +     DMYAAID  +DKL  Q+ +HK K++ H
Sbjct: 61 YIILRSEVRDPDMYAAIDKSVDKLTAQIRRHKSKIRHH 98


>UniRef50_A9KDT2 Ribosome-associated factor Y n=6 Tax=Coxiella burnetii
          RepID=A9KDT2_COXBN
          Length = 96

 Score = 86.5 bits (214), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 54/95 (56%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + +TG  V+I+ ALRE    K  +++   D I+ ++++  + K+    DA + + G  
Sbjct: 1  MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGST 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I+A AE  DMY  +D L+ KL  QL+K+K K   H
Sbjct: 61 INAQAESDDMYKTVDLLMHKLETQLSKYKAKKGDH 95


>UniRef50_P30334 Probable sigma(54) modulation protein n=14 Tax=Rhizobiales
          RepID=RP5M_BRAJA
          Length = 203

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M L I+G +V + EALR  V+ +  + L +YFD     ++ L  +     +D  LH++ G
Sbjct: 1  MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A +   D YA+ D  +  + ++L ++K +LK  
Sbjct: 61 ITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDR 97


>UniRef50_P17265 Probable sigma(54) modulation protein n=55 Tax=Rhizobiales
          RepID=RP5M_RHIME
          Length = 190

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + ++G ++EI ++ R  +  +  + + +YFD      V ++      ++D  LH++ G
Sbjct: 1  MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A+ +  +  +A D   +++ ++L ++K KLK H
Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH 97


>UniRef50_B0MPR7 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0MPR7_9FIRM
          Length = 211

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
           M +NIT   +++T+A  ++ T K   KL+++F       V L  +K   T + T+   G 
Sbjct: 38  MTVNITAKKIQVTQAFSDYATKKIEAKLDRFFSGDADCKVTLSEQKNMITCEVTVRTAGL 97

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              +  +  D   A D  ID++ RQ+ K+K ++++
Sbjct: 98  IFRSEQKAADKNDAFDACIDRIIRQIRKNKTRVEK 132


>UniRef50_A8RDK2 Putative uncharacterized protein n=5 Tax=Bacteria
          RepID=A8RDK2_9FIRM
          Length = 177

 Score = 86.1 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M++NI G N+ +T AL E +  K   LE+YF  D      VV++V       + T+    
Sbjct: 1  MKVNIYGKNITVTPALSEKIEKKLNHLEKYFMIDDSVVANVVVRVYPNKQKIEVTIPTKY 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +       D+YAAID  IDKL  Q+ + K +L +
Sbjct: 61 AVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTR 96


>UniRef50_Q21ND3 SSU ribosomal protein S30P / sigma 54 modulation protein n=2
          Tax=Alteromonadales RepID=Q21ND3_SACD2
          Length = 118

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+N++G++VE+T+A+R     KF K+  ++  ++ V V L VEK     +AT    G  
Sbjct: 1  MQINLSGHHVELTDAIRNIANEKFQKIASHYPHLDSVDVYLTVEKHEQKVEATTQYRGAT 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          +   +   D+YAAI   + KL   L+  K 
Sbjct: 61 LAVQSSKTDLYAAIGDSVRKLESALSHRKG 90


>UniRef50_D1B9M7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Synergistaceae RepID=D1B9M7_THEAS
          Length = 180

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M +     NVE+  ++++ +  K  KLE++FDRI    V +  ++  +  + T ++NG  
Sbjct: 1  MDVRFVARNVELQNSVKDLMEKKLGKLERFFDRILDTQVAVDFKRGMYVVEITSNINGMV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +       D+  A +  +  + RQ+ +HKD L   
Sbjct: 61 MRGEDYAPDLRKAFEKSLKNIERQVKRHKDMLVDR 95


>UniRef50_A9TA00 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens
           RepID=A9TA00_PHYPA
          Length = 297

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVT-------HTSDAT 53
           +L I G ++E+T+A++++V  K          +  +V V + V              + T
Sbjct: 89  RLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGRGERLQRCEVT 148

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G + A  E + MYA+ID + D ++R+L K K+K   H
Sbjct: 149 LFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGH 191


>UniRef50_D2LB60 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Rhodomicrobium vannielii ATCC 17100
          RepID=D2LB60_RHOVA
          Length = 199

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M + +TG N+++ E+LRE+   +    L++Y  R     + ++       S   +H+  G
Sbjct: 1  MTIKVTGKNIDLGESLREYALNRVESALDKYSGRSVSGQISVEKNTDGFFSHCAIHLESG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ ++  G D YA++D  +++L ++L ++K ++  H
Sbjct: 61 LDLQSTGTGVDGYASVDSAMERLEKRLRRYKRRIDDH 97


>UniRef50_C1EFG3 Predicted protein n=2 Tax=Micromonas RepID=C1EFG3_9CHLO
          Length = 284

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVT---------HTS 50
           ++ + G ++EIT+++RE+   K  K   +FD   + +V V                   +
Sbjct: 81  KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKT 140

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           + T++   G I +  E  D+YA+ID + DKL R+L K K+K
Sbjct: 141 EVTVYTRNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEK 181


>UniRef50_A6W0C2 Sigma 54 modulation protein/ribosomal protein S30EA n=7
          Tax=Gammaproteobacteria RepID=A6W0C2_MARMS
          Length = 105

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 4  NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHA 63
           I+G+++++T A+++ +  K +K+ +  D+I  V V L  +  +  ++A +H+ G EI A
Sbjct: 5  KISGHHIDVTPAIKDHINEKLSKVAKLTDQITSVNVTLLKDSKSQKAEARVHIPGKEIFA 64

Query: 64 SAEGQD-MYAAIDGLIDKLARQLTKHKDKLK 93
          SA  +D ++ AID ++DKLA+Q+ KHK K  
Sbjct: 65 SASSEDRLFHAIDDMVDKLAKQIDKHKTKQS 95


>UniRef50_Q6MPK4 Ribosome-associated protein Y n=1 Tax=Bdellovibrio bacteriovorus
          RepID=Q6MPK4_BDEBA
          Length = 116

 Score = 85.8 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 45/95 (47%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+LN T  +++ +E+L  +   + A++ ++  R     V     K     + +++     
Sbjct: 1  MKLNYTFKHLDHSESLETYTEERMAEVGRFLLREGYGNVYFSKVKNEFCVEISVNTREKY 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            A+A G D+Y A+D   +K+ +Q  K   + K H
Sbjct: 61 FKATAYGPDVYGAVDACAEKMEKQFLKTNKQYKDH 95


>UniRef50_A6G444 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Plesiocystis pacifica SIR-1 RepID=A6G444_9DELT
          Length = 200

 Score = 85.8 bits (212), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEIHASAEGQ 68
          +E ++ALR +   + AK+++YF    +V     VEK+ H +   + + NG ++H+S + +
Sbjct: 1  MESSDALRNYAEDRLAKIKRYFSDPLKVNCTFSVEKINHIAQFDVTLRNGLQLHSSEKTE 60

Query: 69 DMYAAIDGLIDKLARQLTKHKDKLKQH 95
           MY++ID  + K+ RQ+ ++KD++  H
Sbjct: 61 SMYSSIDMALAKMERQVRRYKDRITNH 87


>UniRef50_C9M512 Ribosomal subunit interface protein n=2 Tax=Synergistaceae
           RepID=C9M512_9BACT
          Length = 197

 Score = 85.4 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHVNGG 59
           M +  T +N +I   ++E++  K  ++E++F RI  + V +K +K      + T   NG 
Sbjct: 16  MDIRFTTHNAKIPAEMKEYMEGKLGRMEKFFSRILDMQVAVKTDKKDFVTVEITADANGV 75

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       D+  A D  +  L R++ +HK+ L   
Sbjct: 76  VLRGEQRDPDLRKAFDLALKVLERRIRRHKEYLIDR 111


>UniRef50_D1N462 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Victivallis vadensis ATCC BAA-548
          RepID=D1N462_9BACT
          Length = 114

 Score = 85.0 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++++TG   EIT ++RE+V ++   L E      +   VV+  +K +  +   ++    
Sbjct: 1  MKISVTGRQFEITPSIREYVESRIQALVEDKALDFSSAKVVMDYQKNSFKTTLVVNCKYH 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           + A  E  D+Y + D  + K+  QL   ++K++ H
Sbjct: 61 VVPAEVEDFDLYKSFDACVAKVDTQLKTIREKIRSH 96


>UniRef50_C7MXY7 SSU ribosomal protein S30P/sigma 54 modulation protein n=29
          Tax=Actinomycetales RepID=C7MXY7_SACVD
          Length = 226

 Score = 85.0 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M + I G NVE+ E  R  V  K A+LE+Y  ++    V L  E            + T 
Sbjct: 1  MDIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITG 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLA 82
             G  + A A   D Y A+D  I KL 
Sbjct: 61 KGKGPVVRAEARAGDFYTALDSAIRKLE 88


>UniRef50_A7HPI1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Parvibaculum lavamentivorans DS-1
          RepID=A7HPI1_PARL1
          Length = 193

 Score = 84.6 bits (209), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          MQ+ ++G+++++ +ALR   T +    + +YFDR     V L  +     +D + H+ +G
Sbjct: 1  MQVQVSGHHLDVGDALRTHATERLEAAVTKYFDRPVDGQVTLTKQGHEFRADCSAHLSSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLA 82
            ++A     ++YA+ +  +++L 
Sbjct: 61 LRVNAQGTANEVYASFEAALERLE 84


>UniRef50_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=6
           Tax=Chloroflexi (class) RepID=A7NNI5_ROSCS
          Length = 198

 Score = 84.6 bits (209), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV-----VLKVEKVTHTSDATLH 55
           M L +   N ++++  R+ +  K ++L++Y DRI++V V     + + E   H    T+ 
Sbjct: 6   MNLIVNSRNGKLSDRQRQHIEQKLSRLDRYLDRIDKVTVEHMEEMRRNEGNVHRVQVTVV 65

Query: 56  VNGGEI-HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            + G +  A     ++YAAID + D L RQ+ ++KDK 
Sbjct: 66  GDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH 103


>UniRef50_C4LBF7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Tolumonas auensis DSM 9187 RepID=C4LBF7_TOLAT
          Length = 110

 Score = 84.2 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT   +++T ++RE+V +KF KLE+    +   +V +  E   +  +A + +  G+
Sbjct: 1  MLIEITSKIIDVTPSIREYVVSKFEKLERMQVPMISPHVYVGKEGERYVIEAKIQIPFGK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          + A AE +D++AAI+ L  KL RQ+ +H  +    
Sbjct: 61 LFAEAEHEDLHAAINALEQKLERQIIRHIHRPDAR 95


>UniRef50_C9RQK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Fibrobacter succinogenes subsp. succinogenes S85
          RepID=C9RQK5_FIBSS
          Length = 105

 Score = 84.2 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59
          M +  +  +   +  L++ +  +  KL +++  I    V+L  E +     + ++++ G 
Sbjct: 1  MDIQFSARHFNASAGLQDRIQEEMDKLAKFYPNITSASVILDHEVEHQRHCEISVNITGS 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           I ASA+ ++M  A+D  ++++  QL K  DK   H
Sbjct: 61 VIVASADEENMGKAVDVTLERIKVQLKKANDKQNDH 96


>UniRef50_P19954 30S ribosomal protein 1, chloroplastic n=17 Tax=core eudicotyledons
           RepID=RR30_SPIOL
          Length = 302

 Score = 84.2 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G N+E+++ +R  V  K  K + ++   + +V V L                + T
Sbjct: 76  KLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVT 135

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L     G I A  + + +Y++ID +   + R+L K KDK+  H
Sbjct: 136 LFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDH 178


>UniRef50_C7QBC3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Catenulispora acidiphila DSM 44928
           RepID=C7QBC3_CATAD
          Length = 237

 Score = 83.8 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + +   + E+T+  R  V  K AK+E+   +   + VVL  EK           + TL
Sbjct: 1   MDIVVKSRHHEVTDRFRRHVVEKLAKVEEMDGKAISLTVVLGEEKNPRQSEQKDRIELTL 60

Query: 55  HVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                  I A A   D Y+A+D    KL  QL + KD+ K H
Sbjct: 61  DCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIH 102


>UniRef50_A8ZTQ1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTQ1_DESOH
          Length = 111

 Score = 83.8 bits (207), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ +T  N+E +E L++FV+ K  K ++ FD   +  V+L VEK  + ++  L  +   
Sbjct: 1  MQVTVTFKNLEASEHLKQFVSEKLNKFDRLFDSPAKAEVLLSVEKFRNIAEINLTGDKLN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLA 82
          I    E +DMYAAID ++DK+ 
Sbjct: 61 IIGKEETEDMYAAIDLVMDKIE 82


>UniRef50_P24694 Probable sigma(54) modulation protein (Fragment) n=4
          Tax=Acidithiobacillus RepID=RP5M_THIFE
          Length = 78

 Score = 83.8 bits (207), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK---VEKVTHTSDATLHVN 57
          MQ+ ITG ++++T++++ +   K  +L +YFD ++   VVLK    EK+++  D T++  
Sbjct: 1  MQITITGQHLDLTDSIKNYADEKIGRLGRYFDHVSNAQVVLKHLPHEKLSNVVDITVNAP 60

Query: 58 GGEIHASAEGQDMYAAID 75
          G   HA     DMY  ID
Sbjct: 61 GHVFHAEVHDADMYTGID 78


>UniRef50_C7HV18 Ribosomal subunit interface protein n=2 Tax=Anaerococcus
          RepID=C7HV18_9FIRM
          Length = 177

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+LNI G N+ + E+L+E    KF +L++YF++  ++ +    E      ++T+ + GG 
Sbjct: 1  MKLNIKGKNINVYESLKEEAKEKFDRLDKYFNKEEEMDLKFSTEGNLKKVESTIFLKGGT 60

Query: 61 I-HASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          I  A     +    ID +ID L RQ+ K K KL++
Sbjct: 61 ILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQR 95


>UniRef50_Q3SIX5 Possible Sigma 54 modulation protein/ribosomal protein S30EA n=4
           Tax=Betaproteobacteria RepID=Q3SIX5_THIDA
          Length = 189

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
           L IT  ++E +EAL   +  K  KLE +F  I    VVL      K +         + V
Sbjct: 5   LQITFRDIEPSEALEAHIREKADKLETFFQPIMSCRVVLEVPHQHKHQGKVFKLRIDIGV 64

Query: 57  NGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            G EI  +    +D+Y A+    D   RQL  +  +L++
Sbjct: 65  PGSEIVVNRDAHEDVYVALRDAFDAARRQLDDYSRRLRR 103


>UniRef50_Q6AGI3 Sigma-54 modulation protein n=4 Tax=Actinobacteria (class)
           RepID=Q6AGI3_LEIXX
          Length = 232

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV-------EKVTHTSDAT 53
           M +NI G N+ IT+  RE+   K  K+    +R     + +         +      + T
Sbjct: 1   MDINIVGRNLGITDRFREYAAEKSEKVAHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60

Query: 54  LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           L      + + A G D YAA D  + KL  ++ + KD+ K H
Sbjct: 61  LVGPRATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVH 102


>UniRef50_C8NLT0 S30AE family protein n=21 Tax=Corynebacterium RepID=C8NLT0_COREF
          Length = 234

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSD------ATLH 55
           Q++ITG NVE+ E   E V  K AK+E+    +   +V L+ E     +D       T  
Sbjct: 25  QVSITGRNVEVPEHFAERVHKKLAKIERLDPTLTFFHVELQHEPNPRRADESNRIQITAT 84

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             G    A A+    YAA++  + K+ R L K K +  
Sbjct: 85  GKGHIARAEAKEDSFYAALETALAKMERSLRKVKARRS 122


>UniRef50_A0M3Z9 Sigma-54 modulation protein-like ribosome-associated protein n=12
          Tax=Flavobacteria RepID=A0M3Z9_GRAFK
          Length = 100

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++N+   N    + L +F   K  KL+ YFD+I    V  KV+    K    ++  L V
Sbjct: 1  MKMNLQSVNFNADQKLIDFTQKKLDKLDTYFDKIIHADVYFKVQNTSGKENKITEILLSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           GG+I          A +D  +  L RQL K K+K+  H
Sbjct: 61 PGGDIMVKKTCNKFEACVDECVSSLQRQLIKRKEKMSAH 99


>UniRef50_A8IJQ7 Sigma 54 modulation protein n=1 Tax=Azorhizobium caulinodans ORS
          571 RepID=A8IJQ7_AZOC5
          Length = 198

 Score = 83.4 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          M L ++G N+++ EALR+  + + +++  +YFD     +  +  E   + S+  LH++ G
Sbjct: 1  MALRVSGKNMDVGEALRQRFSDRVSEVVGKYFDGGWSGHATVCREGSGYRSELLLHLDSG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + A    Q+  A  D  ++K+ ++L ++K +LK  
Sbjct: 61 TNLQAHGNAQEPNACADAAMEKIEKRLRRYKQRLKGR 97


>UniRef50_D2EW39 Ribosomal subunit interface protein n=4 Tax=Bacteroides
          RepID=D2EW39_9BACE
          Length = 99

 Score = 83.1 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M++ I   + + +E L+ FV  K AKLE+++D I +V V LKV K        +   + V
Sbjct: 1  MEVRIQSIHFDASEQLQSFVQKKVAKLEKFYDDIKKVEVSLKVVKPETAENKEAGVKVLV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            GE +A+        A+D  ++ L +QL K+K+K + 
Sbjct: 61 PNGEFYANKVCDTFEEAVDLCLEALEKQLVKYKEKQRS 98


>UniRef50_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
          ATCC 29799 RepID=A6NQP5_9BACE
          Length = 181

 Score = 83.1 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 45/95 (47%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+   T   V +   +  +   K  KL++YF    +  +V  VEK  +  + T+   G  
Sbjct: 1  MKFVFTDKKVNLPRKVHAYAEKKVGKLDRYFKADAEAAIVFSVEKDRNNVELTIRSAGTI 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          I  +    DM+A ID  +  + RQL K+K +L++ 
Sbjct: 61 IRVAESTSDMFATIDAAVASVERQLRKNKARLEKR 95


>UniRef50_A1ZNT3 Ribosomal subunit interface protein n=2 Tax=Flexibacteraceae
          RepID=A1ZNT3_9SPHI
          Length = 100

 Score = 83.1 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-----SDATLH 55
          M+L     +      L EF+  K  KLE ++DRI    V L++EK  H       +  L+
Sbjct: 1  MKLQFHSVHFNADPKLTEFIEQKANKLETFYDRIIDGEVFLRLEKNEHRYDNKVIEIKLN 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          + G  +          AA D  ++ L RQL KHK+K
Sbjct: 61 IPGTILFTKEHATSFEAATDQAVESLRRQLKKHKEK 96


>UniRef50_C1F1L9 Ribosomal subunit interface protein n=1 Tax=Acidobacterium
          capsulatum ATCC 51196 RepID=C1F1L9_ACIC5
          Length = 225

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+  TG +V +  A R        ++ +   RI   +VVL  EK    ++ T+ +   +
Sbjct: 1  MQIEYTGRHVHVNNACRALCEEGLERVSKLLGRIVSAHVVLSNEKHRCMAEITIEIRANK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
          + ++AE   M  A+   ++K   Q  + K K+
Sbjct: 61 LVSTAESTSMETAVRMALEKAETQAKRFKQKM 92


>UniRef50_B9XGM0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=bacterium Ellin514 RepID=B9XGM0_9BACT
          Length = 117

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M+L +T +N+ +T+A+   + ++  KLE +        V L  +              L 
Sbjct: 1   MKLILTTHNLTLTQAIENHILSRIDKLEHFDRFAINARVTLDHDSTKAVNRQFKCSMRLA 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G ++ A     DMYAAID +  K+ +Q+ K + K K  
Sbjct: 61  VPGPDLFAEDSEGDMYAAIDLVTKKIEQQIRKRQSKHKAR 100


>UniRef50_A6LE89 Sigma-54 modulation protein n=23 Tax=Bacteria RepID=A6LE89_PARD8
          Length = 99

 Score = 83.1 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M + I   + + T  L  F+  K +KLEQYFD I    V LKV K        +   L V
Sbjct: 1  MDVRIQAIHFDATAQLEAFIQKKVSKLEQYFDGIILAEVTLKVVKPETVKNKQASIMLSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            GE  A         AID  ++ L +QL K K+K++
Sbjct: 61 KNGECFADKINDTFEGAIDDCVEALEKQLVKFKEKIR 97


>UniRef50_Q2JEZ4 SSU ribosomal protein S30P / sigma 54 modulation protein n=4
           Tax=Actinomycetales RepID=Q2JEZ4_FRASC
          Length = 267

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M + + G +  + E  R  V AK AKLE+    I +V V L  E+           + T+
Sbjct: 1   MDIVVKGRHTAVPERFRNHVQAKLAKLERLNSNIIRVDVELSKERNPRLSDVCDRVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  G  I A A   D YAA+D    KLA +L +  D+  +H
Sbjct: 61  YSRGPVIRAEAAAADCYAALDLAAGKLAERLRRAADRRVRH 101


>UniRef50_UPI00016C04A0 sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Epulopiscium sp. 'N.t. morphotype B'
          RepID=UPI00016C04A0
          Length = 177

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 54/94 (57%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+ ++   N E+T+ + + +    ++LE+YF+    + V + VEK   T +  ++ +G  
Sbjct: 1  MKYDVVARNTEMTKGMEDAIQNSISRLEKYFNDEAVIQVTITVEKQRQTVEMAINFDGQV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          + A  EG++MY  +D ++  L RQ+ + ++KL+ 
Sbjct: 61 LRAELEGENMYKILDDVVAILERQVLRFRNKLRT 94


>UniRef50_C7H0Q0 Ribosomal subunit interface protein n=1 Tax=Eubacterium saphenum
          ATCC 49989 RepID=C7H0Q0_9FIRM
          Length = 176

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 52/93 (55%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++NI+  N   ++ L+E +  KF+KL++YF       ++++  K  +  +A L   G  
Sbjct: 1  MRVNISAKNYHPSDHLKEMIDKKFSKLDKYFPEEAVTEIMVEKGKAGYKFEAMLQEKGTL 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +    +D Y A+D  + KL+RQ++K K KLK
Sbjct: 61 FRSEVTAEDPYIALDIAVGKLSRQMSKFKSKLK 93


>UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein n=1 Tax=Porphyromonas uenonis 60-3
           RepID=C2MBI5_9PORP
          Length = 403

 Score = 82.7 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57
            ++I     + +EAL++F   K  +L ++ D I++  + L+++K        +   L V 
Sbjct: 309 NVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKIAAIRLFVP 368

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G + +A         AID  ID L RQ+ + K+
Sbjct: 369 GHDHYAEKGATTFEEAIDEAIDALKRQIDRAKE 401


>UniRef50_Q1VZQ7 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC
           700755 RepID=Q1VZQ7_9FLAO
          Length = 100

 Score = 82.7 bits (204), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
           M +N    +V  +E L E VT K  KL+  +D I +  V  K E     K     +  L 
Sbjct: 1   MDINFNYVHVTASERLEELVTKKLEKLQDRYDWIVRSEVFFKTENTSSPKTGMICEIKLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + AS+  +    AI   ID + RQL K K+K+  H
Sbjct: 61  APGQNLFASSNEKGFEVAITNTIDDVKRQLQKKKEKMSSH 100


>UniRef50_A6FEI0 Hypothetical sigma-54 modulation protein n=1 Tax=Moritella sp.
          PE36 RepID=A6FEI0_9GAMM
          Length = 128

 Score = 82.7 bits (204), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVNGG 59
          M   IT   +++T  + E +  K+AKLE++   +   +V +  +K      +A++H+  G
Sbjct: 1  MTFEITSKEIKVTAPMHEKLAMKYAKLERFNIPMINPHVTISKDKNNVKKLEASIHLPQG 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          ++ A +EG+D+YAAI  L  KL RQL K+ +K   H
Sbjct: 61 QLLAVSEGEDLYAAITILGQKLERQLNKYSEKHSAH 96


>UniRef50_A7VXE1 Putative uncharacterized protein n=2 Tax=Clostridiales
          RepID=A7VXE1_9CLOT
          Length = 183

 Score = 82.7 bits (204), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGG 59
          M++ ITG  V + +  +E V  K  K  + F       V + VEK   T + T+   +G 
Sbjct: 1  MKITITGRKVSLRDNFKERVGKKLKKFGRMFGEDASASVTVTVEKRRQTVEVTIRTADGM 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             +     +M  A+D +++ L RQ+ K+K KL++
Sbjct: 61 VYRSEQTAPEMNDALDEVVNALGRQIRKNKCKLEK 95


>UniRef50_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO
          Length = 199

 Score = 82.3 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK----LEQYFDRINQVYVVLKVEKVTHTSDATLHV 56
           M+  +    VE+TEAL  ++  + +K    L+++ D ++   V +  E+  +  + T H+
Sbjct: 1   MEYKVYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERGIYKVEITTHI 60

Query: 57  N--GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           N     I       D+Y AID + D L R++ K K++L++
Sbjct: 61  NPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQE 100


>UniRef50_Q2BGD6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Neptuniibacter caesariensis RepID=Q2BGD6_9GAMM
          Length = 112

 Score = 82.3 bits (203), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + IT  NV+ +++++E V       ++ ++ I   +V+L+       ++AT+HV G +
Sbjct: 1  MNVKITHRNVKASDSIKEKVEGWLDSSQERYEVITSAHVILEKNDREDIAEATVHVAGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          I A A   ++YAA+D L DK+ RQL K   K
Sbjct: 61 IFAKASADNLYAALDSLADKIDRQLDKIHQK 91


>UniRef50_B0T677 Sigma 54 modulation protein/ribosomal protein S30EA n=5
          Tax=Alphaproteobacteria RepID=B0T677_CAUSK
          Length = 210

 Score = 81.9 bits (202), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-G 58
          MQ+ I+G +V++ EALR  V+ +    + +YFDR     VV+  E      D ++ +  G
Sbjct: 1  MQVQISGKHVDVGEALRARVSDEITLSIGKYFDRGGDAEVVISKEGFAFRVDCSVKLASG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ +   G D +AA D  + K+  ++ ++K +LK H
Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIETRIRRYKRRLKSH 97


>UniRef50_A6WEN5 Sigma 54 modulation protein/ribosomal protein S30EA n=7
          Tax=Actinobacteridae RepID=A6WEN5_KINRD
          Length = 256

 Score = 81.9 bits (202), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M++ +TG + ++ E  R  V  K  K+ Q+  R  ++ V L  E            + T+
Sbjct: 1  MEVVVTGRHTDVKERFRRHVEDKLEKVVQFAPRAQRIDVELSHENNRRQASSSERVEITV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
             G  + A A   D YAA+D    KL
Sbjct: 61 RDKGPVVRAEACADDPYAALDLATTKL 87


>UniRef50_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT
          Length = 178

 Score = 81.9 bits (202), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLKVEKVTHTSDATLHVNG 58
          M+ NI   ++ +T+ ++E +  K AK+ +  D      + V +  E+  +  + T H+ G
Sbjct: 1  MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +     G D Y  ++ + + L R++ ++K++ +  
Sbjct: 61 FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMR 97


>UniRef50_P33987 Probable sigma(54) modulation protein n=18 Tax=Acinetobacter
          RepID=RP5M_ACIGB
          Length = 113

 Score = 81.9 bits (202), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----------THTS 50
          MQ+ I G+++ IT A+ E +  +F ++ ++ D++N + V L  +             H +
Sbjct: 1  MQITIRGHHLSITPAIEENIRDRFTQMTKHIDQVNSMQVKLSKDHQLDKRSKKGSANHIA 60

Query: 51 DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK 89
          +A + + G E+ A A   DMY AI  L DKL RQL KH+
Sbjct: 61 EAIVRLPGIELFAQASADDMYNAITKLTDKLKRQLDKHR 99


>UniRef50_D1C3T1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Sphaerobacter thermophilus DSM 20745
          RepID=D1C3T1_SPHTD
          Length = 194

 Score = 81.5 bits (201), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M + I   N+ +T+AL+E++ ++  +L++   ++      ++ E+         +  T+ 
Sbjct: 1  MDVQIKARNLRLTDALQEYIESRLQRLDKIDQKVTDAKFEIRSERNRTGGEQMVAQFTIA 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
               +    + +D++ AID  I+++ RQ+ + +DK 
Sbjct: 61 TKDAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKR 97


>UniRef50_B2V794 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Sulfurihydrogenibium RepID=B2V794_SULSY
          Length = 187

 Score = 81.5 bits (201), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYF------DRINQVYVVLKVEKVTHT--SDA 52
           MQ+   G N+EIT+ ++ +   K  +L+ Y           +V VV   EK  H    D 
Sbjct: 1   MQVEHVGKNIEITDFIKAYTEHKLERLKHYLKDLDVAPDSVRVRVVYDFEKHRHRNRVDI 60

Query: 53  TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            +++N   GG IHA  E  D+Y+AID +ID++ RQL + K + 
Sbjct: 61  DVYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRR 103


>UniRef50_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
           RepID=C6YXL0_ORYSJ
          Length = 321

 Score = 81.5 bits (201), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++ E ++E +  K  + + ++   + +V V L                + T
Sbjct: 82  RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L     G I A  + +  YA+ID     + R+L K K+K   
Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183


>UniRef50_C9LEJ2 Ribosomal subunit interface protein n=1 Tax=Prevotella tannerae
          ATCC 51259 RepID=C9LEJ2_9BACT
          Length = 114

 Score = 80.8 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M+L I      +TE L+ F+  KFAK+ ++ + I+   V+LKV K       ++   ++V
Sbjct: 1  MELKIQSIQFNVTEKLQAFIQKKFAKIAKFNENISAAEVILKVTKPETANNKSTVLNINV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G   H           +D  ++ + RQL+K+K+K + 
Sbjct: 61 PGENFHVEKVCDTFEEGVDLCMESMLRQLSKYKEKQRG 98


>UniRef50_B2UQU2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Akkermansia muciniphila ATCC BAA-835
           RepID=B2UQU2_AKKM8
          Length = 197

 Score = 80.8 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGGEI 61
           + ITG +VE+T+A+REFVT K   +   F RI +V V+L V++    S   L   +   I
Sbjct: 10  ITITGRHVEVTDAIREFVTKKIEGIRLDFPRIMEVKVLLDVQRDRKISQVILFCSDHITI 69

Query: 62  HASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            AS EG DMYA ID  I K+ R++ KHK +L
Sbjct: 70  DASTEGTDMYACIDETITKIMRRMRKHKTRL 100


>UniRef50_Q3B2F4 Putative uncharacterized protein n=3 Tax=Chlorobiaceae
           RepID=Q3B2F4_PELLD
          Length = 130

 Score = 80.8 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVNG 58
           + +T  +     A+ E+  +    L + +  I   +V+L  +K        ++ TLHV  
Sbjct: 36  IKVTLRHSNNHNAIEEYARSAVQSLTKLYPAILTCHVILDHQKNDFEKNKNAEITLHVPQ 95

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
            +  A   G      ID  +D L RQL K+K+K+
Sbjct: 96  HDFIAKESGTAYELCIDACVDALGRQLQKYKEKM 129


>UniRef50_Q1PXY8 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
          stuttgartiensis RepID=Q1PXY8_9BACT
          Length = 119

 Score = 80.4 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-THTSDATLHV-NGG 59
           + I   +++ITEA+R +   K  K++++F+ I  V V L +    +H  +  ++V  G 
Sbjct: 3  NITIVARHLDITEAIRNYALQKAEKIKKFFEWILHVQVTLDIGGDSSHLVEMVVNVSRGP 62

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           I A A   DMY +ID ++DK+  QL KHK K++ 
Sbjct: 63 TIVAEASNTDMYRSIDIVVDKVVAQLKKHKGKIES 97


>UniRef50_B9L9D3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Nautiliaceae RepID=B9L9D3_NAUPA
          Length = 166

 Score = 80.4 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-HTSDATLHVN-G 58
          M + I G NVE+TEA+++ ++   +++E+Y   I    V ++ +K    T +  +++   
Sbjct: 1  MNVTIVGRNVELTEAMKDHISKVVSEVEKYNLGILHSIVTVEKDKRDFFTVEIIMNIPDK 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G      + +DMYAA+D   DKL + L ++ DK+  +
Sbjct: 61 GTAVVHYKDKDMYAALDKAKDKLEKLLRRYHDKITDY 97


>UniRef50_C6V4K5 Ribosomal subunit interface protein n=2 Tax=Neorickettsia
          RepID=C6V4K5_NEORI
          Length = 186

 Score = 80.0 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M++ ++G+  ++  +L E++T +    ++++  +     V L  E      D  ++    
Sbjct: 1  MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLTQAAGARVSLSKEGRFFHVDVIVNSPIS 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           I AS E  D Y A D    K+  +L ++KD+LK+H
Sbjct: 61 LIKASGESHDPYLAFDNAFSKILLKLRRYKDRLKEH 96


>UniRef50_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius
           DSM 20547 RepID=C7NFI2_KYTSD
          Length = 245

 Score = 80.0 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           MQ+ +TG   ++T+  R  V  K  +L      I++  V+   E            + T 
Sbjct: 1   MQITVTGRRAQVTDRFRRHVDEKLERLADIAPDISRCEVLWTHEPNPRRSEDAERIEITC 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           H     + A A  +  Y A+D ++ K+  ++ +  D+ K H
Sbjct: 61  HDKRTVVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVH 101


>UniRef50_Q5U9F8 RedA n=2 Tax=Myxococcus xanthus RepID=Q5U9F8_MYXXA
          Length = 172

 Score = 80.0 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52
           M   L IT   +E +EAL E +     KLEQ++D I   +VV+      K          
Sbjct: 62  MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRV 121

Query: 53  TLHVNGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + V G  I AS +       +D Y A+    D   RQL  + D L  H
Sbjct: 122 DVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTH 170


>UniRef50_C6II14 Sigma-54 modulation protein n=16 Tax=Bacteroidales
           RepID=C6II14_9BACE
          Length = 123

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
           M + I   + + +E L+ F+  K +KLE+Y++ I +V V LKV K        +   + +
Sbjct: 25  MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 84

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             GE +AS        A+D  ++ L +QL K+K+K + 
Sbjct: 85  PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRS 122


>UniRef50_C1Z9P6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=2
          Tax=Planctomyces RepID=C1Z9P6_PLALI
          Length = 114

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59
          MQ+ IT  +  I+   +E +  K  KL  YF R+  + V +  E    T +  +      
Sbjct: 1  MQIAITSRHGSISPEAQELIREKSEKLLTYFARVTSINVTVSFEHHRATVEILVDAEHKH 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  A+  G ++       + K+ +Q+ K+K+K++ H
Sbjct: 61 DFVATDTGDEVIPVFYAALHKMEQQIHKYKEKVQDH 96


>UniRef50_A3VRA6 Ribosomal subunit interface protein Y n=1 Tax=Parvularcula
          bermudensis HTCC2503 RepID=A3VRA6_9PROT
          Length = 197

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + ITG  +++  AL++ VT   +  +E+YFDR  +  V  + E   +  + TLH+  G
Sbjct: 1  MDVQITGQGIDLGRALQDHVTETLSAGVEKYFDRSAEGQVTFQKEGSGNAVEITLHLASG 60

Query: 60 EIHA-SAEGQDMYAAIDGLIDKLA 82
             A   +GQD Y A D  + KL 
Sbjct: 61 VFLASHGKGQDAYGAFDTALQKLE 84


>UniRef50_A8F3K5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Thermotoga lettingae TMO RepID=A8F3K5_THELT
          Length = 177

 Score = 79.6 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYF--DRINQVYVVLKVEKVTHTSDATLHVNG 58
          M    +    + + A+ E++  +F K+++    + I    +  + + + +   A ++  G
Sbjct: 1  MNYIFSTKGFDSSPAIEEYLEKRFQKVDRVLKENDIVSAEIRAEKDAINYVLKANINFKG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            I    +  D+Y AID L D L +++ K K  +++ 
Sbjct: 61 NIIVVQEKDPDLYTAIDRLSDALEKRVKKIKSTVRER 97


>UniRef50_C6Y270 Ribosomal subunit interface protein n=7 Tax=Bacteroidetes
          RepID=C6Y270_PEDHD
          Length = 115

 Score = 79.2 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M++ +   +    + L +F+  K  KL+Q+FD+I    V LK+E         S+  L V
Sbjct: 1  MKITVQSIHFNADQKLLDFIQKKVDKLDQFFDQIISGEVYLKLENVEDEANKISEIKLIV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
           GG + A  + +    A D  I+ L +Q+TKHKDK +
Sbjct: 61 PGGTMFAKEQCKSFEEATDLAIESLRKQITKHKDKTR 97


>UniRef50_A4U0N1 Sigma 54 modulation protein/ribosomal protein n=2
           Tax=Proteobacteria RepID=A4U0N1_9PROT
          Length = 120

 Score = 79.2 bits (195), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 13/105 (12%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYV----------VLKVEKVTHTSDA 52
           L IT + ++ +EA+   V  K AKLEQ+FDRI    V           L  +  ++    
Sbjct: 7   LQITFHGIDHSEAVENRVREKVAKLEQFFDRITSCRVAIESDHKNSSNLHHKGNSYLVRI 66

Query: 53  TLHVNGGEIHAS---AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            L+V G E+       E +D+YAA+ G    + RQL ++  + + 
Sbjct: 67  DLNVPGSELVVKRESDEHEDVYAALKGAFQAMERQLKEYVARSRG 111


>UniRef50_B3DYI7 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Methylacidiphilum
           infernorum V4 RepID=B3DYI7_METI4
          Length = 115

 Score = 79.2 bits (195), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-------KVTHTSDAT 53
           MQ+ I+   V++T+AL   + +KF KL +  +RI    V +  E              A 
Sbjct: 1   MQIQISSPTVKLTDALYNHIESKFEKLTRINERILSAQVNIHHEPAKADISHQAFAIKAR 60

Query: 54  LHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L++ G +I A   G D+Y A+D ++D+LARQL K K  L  
Sbjct: 61  LYIPGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDLTD 101


>UniRef50_C6W7I9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7I9_DYAFD
          Length = 125

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATL 54
           M+L +   + +    L  F+  K  KL+ ++DRI    V LK+ K  +T       +  L
Sbjct: 1   MRLQMQAIHFDADPKLLTFIQQKLDKLDTFYDRITSGEVFLKLAKNENTKLHTKLLEVKL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +V GG +    +G     A D  ID L  Q+ K K+K   
Sbjct: 61  YVPGGTVFVKEQGSTFEEATDLAIDTLKMQVKKFKNKRNN 100


>UniRef50_B7GE66 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GE66_PHATR
          Length = 209

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 3   LNITGNNVEITEALREFVTAKFA-KLEQYFDR--INQVYVVLKVEKVT-----HTSDATL 54
           + I G N+E+T AL E V  +   ++ +      I +  V+L V K       H  +   
Sbjct: 13  VIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSVSKNPKVKNGHRVEVVT 72

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           ++ G  I    E  DMYA+ID     L R+L K+KD
Sbjct: 73  NLKGTSIICHNESPDMYASIDAASHALYRKLCKYKD 108


>UniRef50_Q01PW5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
          Tax=Candidatus Solibacter usitatus Ellin6076
          RepID=Q01PW5_SOLUE
          Length = 181

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFD---RINQVYVVLKVEKVTHTSDATLHVN 57
          M++  TG  VE+  A  + + A+FAK+ +  D   R  +V+V+L +E+  H ++AT++  
Sbjct: 1  MKITYTGRQVELKPAQAKKLEARFAKIGRLLDGGKRECEVHVILSLERHLHKAEATINYY 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            ++       D++ AIDG  +KL +Q  K + K + 
Sbjct: 61 NHQLVGIGSSSDLFEAIDGASEKLEKQCLKERTKFRD 97


>UniRef50_A8PQ11 Ribosomal subunit interface protein n=1 Tax=Rickettsiella grylli
          RepID=A8PQ11_9COXI
          Length = 111

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 64/94 (68%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+ IT + +++T+AL++++  KF +LE+   + + +++ L +E +   + A +H +G E
Sbjct: 1  MQITITDDGIKVTDALKQYILDKFKRLERITHKTSTLHITLSLEHLDQVAKALMHTHGNE 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +A A+ +++Y AID LIDK+ +Q+ KHK K K+
Sbjct: 61 FYARAKNENLYTAIDELIDKIEQQINKHKLKSKE 94


>UniRef50_D1YBK0 Ribosomal subunit interface protein n=3 Tax=Propionibacterium
          acnes RepID=D1YBK0_PROAC
          Length = 203

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M++ ++G +  +++ +R  V  + + +E+  DR+ +  VV   +          T + TL
Sbjct: 1  MEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITL 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
             G  + A  + +D   A D   D+L  QL K  D
Sbjct: 61 RAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAAD 96


>UniRef50_D0LFC2 Ribosomal subunit interface protein n=20 Tax=Actinomycetales
           RepID=D0LFC2_GORB4
          Length = 270

 Score = 78.8 bits (194), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLHV 56
           +  +G NVEI +  R +V  K A+LE++   I +  V L  E+           + T   
Sbjct: 63  VVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQRVEITATG 122

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQ 84
            G  + A A G++ YAA++G +DKL  +
Sbjct: 123 KGPIVRAQACGENFYAALEGSLDKLESR 150


>UniRef50_A9W5P1 Ribosomal subunit interface protein n=7 Tax=Methylobacterium
           RepID=A9W5P1_METEP
          Length = 202

 Score = 78.4 bits (193), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 3   LNITGNNVEITEALREFVTAKFAK-LEQYFDRINQV----YVVLKVEKVTHTSDATLH-V 56
           L +TG+ +++  ALR  V  + A  L +Y D         +V L+ +   + +D  LH V
Sbjct: 4   LRVTGHGLDLGTALRGRVEDRMAATLAKYLDPHMSGSCTGHVTLRRDGAAYRTDCVLHLV 63

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G  + AS    D++A+ +   DKL ++L ++K KLK H
Sbjct: 64  TGLTLEASGAAHDVHASFEQTADKLEKRLRRYKHKLKDH 102


>UniRef50_A8J8B2 Plastid-specific ribosomal protein 1 n=2 Tax=Chlamydomonadales
           RepID=A8J8B2_CHLRE
          Length = 286

 Score = 78.4 bits (193), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK--------VEKVTHTSDA 52
           ++ I G  + +T+A++ +V  K AK +  +   + +V V L           K     + 
Sbjct: 71  RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 130

Query: 53  TLH-VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           T++ +  G +       ++YAAID + DK+  +L K K+K    
Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 174


>UniRef50_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Coriobacteriaceae RepID=C8W7H2_ATOPD
          Length = 196

 Score = 78.1 bits (192), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55
            + I+G  V I+EALR  V  K     + FD       VVL+V+K        T++ T+ 
Sbjct: 3   DIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNPSNPDRKTTEVTVF 62

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V    +  +A   DMYAAID   DK++RQL K+K K+ + 
Sbjct: 63  VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVER 102


>UniRef50_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
           bicolor RepID=C5WRX8_SORBI
          Length = 310

 Score = 78.1 bits (192), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++++ L+E +  K  + + ++   + +V V L                + T
Sbjct: 73  RLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELGRGPKTSRCEIT 132

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           L     G + A  + +  YA+ID     + R+L K K+K
Sbjct: 133 LFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEK 171


>UniRef50_B4S5H7 Sigma 54 modulation protein/ribosomal protein S30EA n=8
           Tax=Chlorobiaceae RepID=B4S5H7_PROA2
          Length = 110

 Score = 78.1 bits (192), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
            + +T  +      + ++       L++ F  I   +V+L  +   +     ++ T+HV 
Sbjct: 12  NVQVTLRHTHNHHEIEQYARDAVQSLDKLFSGIINSHVILDHQNNDYENNKLAEVTVHVP 71

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + A   G     AID  +D + RQL K+K+KL+ H
Sbjct: 72  QQVLVAKEAGATYEQAIDSCVDIVGRQLKKYKEKLQAH 109


>UniRef50_C7RDL1 Sigma 54 modulation protein/ribosomal protein S30EA n=3
          Tax=Anaerococcus RepID=C7RDL1_ANAPD
          Length = 179

 Score = 78.1 bits (192), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHV-NGG 59
          M+LN+   N  +T+ +R     KF +L++YF    ++ V    E      + T  + NG 
Sbjct: 1  MKLNLIAKNFTLTDDIRNESIKKFDRLDKYFHDQQEMDVRFAKEGNDFVVETTAFLDNGR 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           + +    +    AID  ID L RQ+ K+K KL
Sbjct: 61 ILRSETSDETYPTAIDRNIDGLLRQVRKNKTKL 93


>UniRef50_A2PYC3 Probable sigma(54) modulation protein n=1 Tax=Vibrio cholerae
          MZO-3 RepID=A2PYC3_VIBCH
          Length = 78

 Score = 78.1 bits (192), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 55/70 (78%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          MQ+NI G+++++T++++++V +KF KLE++FD IN V V+L+VEK+   ++ATLHVN  E
Sbjct: 1  MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAE 60

Query: 61 IHASAEGQDM 70
          IHA A+ +  
Sbjct: 61 IHAHADDETC 70


>UniRef50_C1QAL2 SSU ribosomal protein S30P n=2 Tax=Brachyspira RepID=C1QAL2_9SPIR
          Length = 256

 Score = 77.7 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M  NI G NV IT+ +RE +  K   ++ + DRI    ++       +T   T+      
Sbjct: 1  MHQNIIGKNVRITKNVREHIANKMQNIKIHADRIIDANIICDYMHGEYTVQGTIAFGKKV 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
           H   + +D+Y AID +  K+ R++ K K++
Sbjct: 61 FHDKEKEKDLYVAIDAMFQKIEREIRKSKER 91


>UniRef50_A2U255 Sigma 54 modulation protein / S30EA ribosomal protein n=4
           Tax=Bacteroidetes RepID=A2U255_9FLAO
          Length = 100

 Score = 77.7 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M +N   ++VE +E L  + T K  KL   F  I +  V  K E           +  L 
Sbjct: 1   MTINFEYHDVEGSERLEAYTTEKLEKLYNKFQMIVRADVFFKTENTSSDNTGMICNIRLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V G  + A A   +  ++I+  +  L  QLTK KDK+  +
Sbjct: 61  VPGPRLFAEASHDNFISSINESVKDLDTQLTKKKDKMSTY 100


>UniRef50_A6DK82 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK82_9BACT
          Length = 119

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + ++G N+++TEAL++ V +  + +   + ++N+  VVL         +  LH N   
Sbjct: 1  MDIIVSGKNLQLTEALKDSVESHLSNMRVSYPKLNKAEVVLSHGHGKFKVEIVLHGNKIN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          + A AE  DMY +I   +D+L RQL K  +
Sbjct: 61 LDAHAETDDMYKSIADAVDRLDRQLEKKLE 90


>UniRef50_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1
          RepID=C0QU53_PERMH
          Length = 188

 Score = 76.9 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRI------NQVYVVLKVEKVTHT--SDA 52
          M++   G N+++TE ++ +   K  +L+ Y   I       +V V    EK  H    D 
Sbjct: 1  MKVEHVGKNIDVTEFIKSYTEHKLERLKPYIKDIDVADDSVEVRVTYAFEKHRHRNRVDI 60

Query: 53 TLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88
           ++     GG IHA  E  D+Y+AID +ID++ RQL + 
Sbjct: 61 DIYFKTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRL 99


>UniRef50_C6X055 Ribosome hibernation protein YhbH n=2 Tax=Flavobacteriaceae
          RepID=C6X055_FLAB3
          Length = 96

 Score = 76.5 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++++    +     L E +  K +KLE Y+D+I +  V LKVE    K   T++  L V
Sbjct: 1  MKISVQSIGLTPHAPLEEHIEKKLSKLETYYDKIVECTVFLKVENKSDKENKTAEIILAV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G +I           ++D   +   R L K K+
Sbjct: 61 PGDDIVVKKTTSSFEESLDQCAEVAKRLLIKKKE 94


>UniRef50_A3U9H3 Site-specific recombinase, phage integrase family/ribosomal
           subunitinterface protein n=3 Tax=Flavobacteria
           RepID=A3U9H3_9FLAO
          Length = 100

 Score = 76.5 bits (188), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLH 55
           M++N    +V  +E L  F T K  KL   +D I +  V  K E          ++  L 
Sbjct: 1   MEINFNYVHVSASERLEAFTTEKINKLANRYDFIVKADVFFKKENTSEPDTGMIAEIRLS 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + A +   +   A+  + ++L  QL K K  +K +
Sbjct: 61  APGPRLFAESSNSNFEHAVAEVAEQLKTQLEKRKASMKTY 100


>UniRef50_B8GU63 Cold-shock protein DNA-binding n=7 Tax=Proteobacteria
           RepID=B8GU63_THISH
          Length = 192

 Score = 76.1 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           + +T  N++ + A+ + V A+  KL Q+ D I    VV++       +   +     L V
Sbjct: 9   VEVTFRNMDPSPAVEDKVRAQIEKLGQFHDHIMACRVVVEAGHRHHHKGNLYHVRIDLTV 68

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             GE+ A          +D+Y A+    D + RQL     K +  
Sbjct: 69  PNGELVASREPSGHHAHEDVYVAVRDAFDAMRRQLQDRLRKQRGR 113


>UniRef50_B9CNR8 Light-repressed protein n=2 Tax=Atopobium RepID=B9CNR8_9ACTN
          Length = 195

 Score = 76.1 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVEKV-----THTSDATLH 55
            + I+G  V +++ALR  V  K     + FD +     VVL+V+K        + + T+ 
Sbjct: 3   DIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRVDKNPSNLERKSVEVTVF 62

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           V    +   + G DMY AID   +K+ RQL K+K ++  
Sbjct: 63  VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVD 101


>UniRef50_B0MSP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
          17216 RepID=B0MSP2_9BACT
          Length = 98

 Score = 76.1 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
          M + I     +    L EFV  K  KL+++ +R     V+LK++K        +   LH+
Sbjct: 1  MNVQIQSVKFDADRKLVEFVEHKMDKLDRFVERAIGADVILKLDKDHELGNKVATINLHI 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G ++ A + G+    A+D  I+ L RQ+ K+K +L++
Sbjct: 61 PGDDLVAESRGKSFEEAVDLSIEALKRQIDKYKGRLEK 98


>UniRef50_A0M1S9 Sigma-54 modulation protein-like ribosome-associated protein n=1
          Tax=Gramella forsetii KT0803 RepID=A0M1S9_GRAFK
          Length = 99

 Score = 76.1 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M+      N++ +E L  F   K  KLE  +D I +  +  K +       + ++  L  
Sbjct: 1  METIFEFVNIDKSENLEAFTQKKLNKLETKYDWIVRANIFFKRDENKKPNGYITEVRLSA 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G EI A ++     A+I      L RQ  K K K+  H
Sbjct: 61 PGPEIFAQSDENSFEASIAETTRDLDRQCEKRKAKMSTH 99


>UniRef50_Q487B8 Ribosomal subunit interface protein n=1 Tax=Colwellia
          psychrerythraea 34H RepID=Q487B8_COLP3
          Length = 111

 Score = 76.1 bits (187), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ I+G++VEITE +++ +  KFAK+ +++  I  +   + VE      + T    G +
Sbjct: 1  MKIKISGHHVEITEGIKQSIENKFAKISKHYPSIMTLNSTITVEPHLQKLEVTTLYEGEK 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          +  +A  + +Y AI  +  KL   L   K 
Sbjct: 61 VTVNASDKQLYVAIAKVAKKLQSALAHRKG 90


>UniRef50_Q2S0T2 Ribosomal subunit interface protein n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2S0T2_SALRD
          Length = 132

 Score = 76.1 bits (187), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVNG 58
           Q  +T  +V++++ + E+   + AKLEQ++D I   +V+L  +       T+   + V  
Sbjct: 30  QTQVTTRHVDVSDRVHEYARDRTAKLEQFYDGITGAHVILGKDNSPAENKTASINIDVYQ 89

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             + A         AI+  +D L RQL K+K KL+ 
Sbjct: 90  KRLSAEDAASSHEEAINLCVDHLRRQLEKYKAKLRS 125


>UniRef50_B0SB82 Sigma 54 modulation protein / S30EA ribosomal protein n=6
          Tax=Leptospira RepID=B0SB82_LEPBA
          Length = 95

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++N T  +++ +EA   +   K  ++ ++  +I    V  +       ++  L+ +G  
Sbjct: 1  MKINYTWKHLDRSEAAENYADEKLERVTKFVQKIVSCEVSFETIHGEIHANLKLNADGNN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +A  + +D+Y  IDGL DK+  Q +KH DK  QH
Sbjct: 61 FNAHNQDKDIYVCIDGLEDKIISQTSKHHDKKSQH 95


>UniRef50_A7I0V2 Sigma 54 modulation protein/ribosomal protein S30EA n=7
           Tax=Epsilonproteobacteria RepID=A7I0V2_CAMHC
          Length = 180

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
           M L+ITG   E+T++++ +V + F  L +Y   I     V+  +    K     D  +++
Sbjct: 1   MNLSITGKQFELTDSIKNYVESAFENLNKYGLDIISGRCVISADERNGKKGFIVDFLINL 60

Query: 57  -NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                I    + +D+YAAID + ++ ++ L +  DK   H
Sbjct: 61  AKKDTIVIRHKDKDLYAAIDSITNRASKILRRTHDKNTTH 100


>UniRef50_B1ZMG4 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutus terrae PB90-1 RepID=B1ZMG4_OPITP
          Length = 127

 Score = 75.7 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           ++ + G +  +T+A++E +  KF+ L ++ D I ++ V +  ++       +T+ A + +
Sbjct: 12  KIILQGIHFTLTDAMQEIMREKFSVLLRHNDYIVRINVRVHQDQTMGTEHHYTATAQIEI 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            G ++ ASAEG+D Y  ID L++KL RQL   + + K 
Sbjct: 72  GGPDLVASAEGKDAYDVIDVLVEKLDRQLKTRQGRRKD 109


>UniRef50_D1B1B4 Ribosomal subunit interface protein n=3 Tax=Campylobacterales
          RepID=D1B1B4_SULD5
          Length = 171

 Score = 75.7 bits (186), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M  +I G   ++TE ++ ++      L +Y   I  V  V+  +    K   + +  +++
Sbjct: 1  MNTSIVGKQFDLTEPIKAYIEGAVDALGKYNLDIISVRTVISADEKNGKKGFSVEFAINM 60

Query: 57 NGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               +    + +D+YAA+D  +++  + L +H DKL  
Sbjct: 61 AHKNTVVIQQKDKDVYAAVDLAVERAKKVLRRHHDKLNS 99


>UniRef50_Q2VZ29 Putative uncharacterized protein n=2 Tax=Magnetospirillum
           RepID=Q2VZ29_MAGSA
          Length = 158

 Score = 75.4 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 18/112 (16%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----------LKVEKVTH 48
           MQ+   IT + V+ ++A+   +  K AKLE  FDRI    VV          L  +    
Sbjct: 39  MQIPLQITFHGVDHSDAVETRIREKVAKLEHLFDRITSCRVVIEQHHKNTSNLHHKGEPF 98

Query: 49  TSDATLHVNGGEIHAS------AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                L V G E+            +D+Y A+      + RQL ++ D+ + 
Sbjct: 99  HIRLALTVPGDELVVKRDPKDSHVNEDIYVALREAFAGMERQLKEYVDRSRG 150


>UniRef50_B7RH54 Cold-shock DNA-binding domain protein n=1 Tax=Roseobacter sp.
           GAI101 RepID=B7RH54_9RHOB
          Length = 192

 Score = 75.4 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL-----KVEKVTHTSDATLHVNG 58
            +T  +++ ++A+   V  +  KLE     I +  V +     + +   +  D +L + G
Sbjct: 6   EVTFKDIDHSDAIEARVRERVDKLEAMSPEIIRCQVWVRAPHRRHKGTEYIIDISLQMPG 65

Query: 59  GEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             +H            D+Y AI    + + RQL + +D+ K  
Sbjct: 66  STLHIDRHPGDDHAHTDIYVAIRDAFNAMERQLRRWQDQHKGR 108


>UniRef50_B5JG17 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae
           bacterium DG1235 RepID=B5JG17_9BACT
          Length = 123

 Score = 75.0 bits (184), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDATLH 55
            L ITG ++++TEA+++ V  K  +L ++ +RI +V V L+        +    +   + 
Sbjct: 8   DLIITGIHMDLTEAIKQSVREKVERLFRHEERIIRVKVELECVYGKGGSEHEFIAKGHIE 67

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           +NG  ++ S    D Y A+D L+DKL R L +   
Sbjct: 68  INGPTMNVSVSDPDCYKAVDLLVDKLDRMLRRRSR 102


>UniRef50_C7PUF5 Putative sigma-54 modulation protein n=1 Tax=Chitinophaga
          pinensis DSM 2588 RepID=C7PUF5_CHIPD
          Length = 99

 Score = 75.0 bits (184), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-----TSDATLH 55
          M + I   + +    L + V+ K  KL  ++DRI  V V LK++ + H      ++  +H
Sbjct: 1  MNVQIQTVHFDADSKLIDHVSKKLQKLNTFYDRIISVEVFLKLDGIAHQVKDKIAEIKVH 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
          +   ++    E +    + D   D +  Q+ K K+K
Sbjct: 61 IPRQDLFVKHESKSFEESFDLAFDSVVNQIKKTKEK 96


>UniRef50_A6FSM7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Roseobacter sp. AzwK-3b RepID=A6FSM7_9RHOB
          Length = 190

 Score = 75.0 bits (184), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 1   MQ--LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDA 52
           MQ  L +T  +++  +ALR  +  +  +L+  FD I   +V L+     H          
Sbjct: 1   MQTPLELTFRHMDQDDALRALIETRVTQLDALFDGITSCHVTLQPGHNRHRQGNLYEVTI 60

Query: 53  TLHVNGGEIHASAEGQDMYA------AIDGLIDKLARQLTKHKDKLKQ 94
            L V G E+       D+ A      AI      + RQL  HK ++  
Sbjct: 61  ELRVPGTELVVHPTKGDVPAHEHPQVAIRDAFTAIERQLRAHKQRISG 108


>UniRef50_A0LVS3 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Actinomycetales RepID=A0LVS3_ACIC1
          Length = 322

 Score = 74.6 bits (183), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5  ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHVNG 58
          +T   VE+   +R +V  K AK+E+   ++ +V V +  E+           + T    G
Sbjct: 1  MTSRKVEVPARVRSYVQEKLAKVEKLCPKVIRVDVEISRERNPRLADSCERVELTCISAG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            I A A  + M AA D   +KL  +L K  D+ + H
Sbjct: 61 PPIRAEAAAETMTAAFDLAWEKLEARLRKAADRRRVH 97


>UniRef50_B6EGD2 Ribosome-associated inhibitor A n=61 Tax=Gammaproteobacteria
          RepID=B6EGD2_ALISL
          Length = 120

 Score = 74.6 bits (183), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLE--QYFDRINQVYVVLKVEKVTHTSDATLHVNG 58
          M++ ITGNN++IT  +RE +  KF KLE  ++ D I +   V K     H  +A + + G
Sbjct: 1  MKVEITGNNIDITPGIRERIEGKFKKLEEKRHLDIIGRHASVTKRSNGKHKVEAYVTIAG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G++ ASAE +D++  I  +  KL RQL K + K +  
Sbjct: 61 GKVAASAEQEDLFGTIREMYQKLERQLDKLQHKSEAR 97


>UniRef50_Q84M68 Os03g0856500 protein n=5 Tax=Poaceae RepID=Q84M68_ORYSJ
          Length = 309

 Score = 74.6 bits (183), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 2   QLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDAT 53
           +L + G NV++ E ++E +  K  + + ++   + +V V L                + T
Sbjct: 82  RLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGPKICRCEIT 141

Query: 54  LHVN-GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           L     G I A  + +  YA+ID     + R+L K K+K   
Sbjct: 142 LFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETD 183


>UniRef50_B6IW92 Ribosomal subunit interface protein, putative n=1
          Tax=Rhodospirillum centenum SW RepID=B6IW92_RHOCS
          Length = 211

 Score = 74.6 bits (183), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
          MQ+ + G  +++ +ALR  VT   + L  +YF       VV+  +     +D  +HV  G
Sbjct: 1  MQVTVKGKQLDVGDALRSHVTDTISALVAKYFGNPLDATVVISRDAHLFKADIQVHVGRG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKL 81
            + +  E  + Y A D   +K+
Sbjct: 61 ILLQSYGEATEPYPAFDDAAEKV 83


>UniRef50_Q30TJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=3
           Tax=Campylobacterales RepID=Q30TJ3_SULDN
          Length = 180

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVV----LKVEKVTHTSDATLHV 56
           M +++TG +VE+T+A++  + A    L +Y   I  V V+     K  K     +  +++
Sbjct: 1   MNISLTGRHVELTDAIKAHMNASIQTLSKYNLDIISVNVIASTQTKKGKDHSVVEFVINL 60

Query: 57  NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                I      QD+YAAID    +  + + +  D+   H
Sbjct: 61  AHKNSIVIEQNDQDLYAAIDLATTRAQKAMRRIHDRDSGH 100


>UniRef50_A9KBC8 Ribosome-associated factor Y n=7 Tax=Coxiella burnetii
           RepID=A9KBC8_COXBN
          Length = 183

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDA 52
           MQ+   IT  N++ T A+ + +  K  KL QY D+I   ++V++       +   +    
Sbjct: 6   MQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRI 65

Query: 53  TLHVNGGEIHASAEG-QDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            L + G E   +    +D+Y AI    D +AR++ +       H
Sbjct: 66  NLTLPGKEFAVNRNEVEDLYVAIRDAFDDMARKVEEEMRMRMGH 109


>UniRef50_A2TTF7 Site-specific recombinase, phage integrase family/ribosomal
          subunit interface protein n=4 Tax=Bacteroidetes
          RepID=A2TTF7_9FLAO
          Length = 103

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M + I    ++ +EAL  ++  K  KL + +D + +  V++K E          +  L V
Sbjct: 1  MDVQIAYVKIDRSEALTTYIEDKLVKLFKRYDWLIKANVIIKKETAQTHHNAICEIELSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  I A ++ ++   A+   I  L  QL K K +   
Sbjct: 61 PGPRIFAQSQEKNFEVAVKETISDLDVQLKKRKAQFTN 98


>UniRef50_C0E9I9 Putative uncharacterized protein n=1 Tax=Clostridium
          methylpentosum DSM 5476 RepID=C0E9I9_9CLOT
          Length = 180

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIH 62
          +NIT    E+ +  ++ +  +  ++++         V L      +  D T+   G  I 
Sbjct: 2  INITARGFELKQGAKDGIEKELKRVDKMLPESALFDVTLSKVTTGYKCDITVKYTGSFIR 61

Query: 63 ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            A  + +  +ID  +D L R+L K K  L  
Sbjct: 62 GEAAAEKIEPSIDFAVDDLKRKLRKLKTSLVD 93


>UniRef50_Q1IR29 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
          Tax=Candidatus Koribacter versatilis Ellin345
          RepID=Q1IR29_ACIBL
          Length = 198

 Score = 74.2 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 44/94 (46%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + + G    IT A+R+ V +   KL +      +  V+L VEK  + ++ T+     +
Sbjct: 1  MNVEVIGRQYNITPAVRKEVESGLEKLTKILGESFKSKVILSVEKHRNLAEITIKRRAQD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          +    E  DM  AI   ++ + +Q  KH ++ + 
Sbjct: 61 LVGLGESTDMRTAIGEALEHIEKQALKHNNRRRN 94


>UniRef50_A6LJQ7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
          Tax=Thermotogaceae RepID=A6LJQ7_THEM4
          Length = 176

 Score = 73.8 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 48/93 (51%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M+  I+   VE TEAL+ ++  +  K+++  +   ++ V L+ +   +     +H  G +
Sbjct: 1  MEYRISTKGVETTEALKNYLEKRLEKIDRVVEDNVRLDVKLEKDSSEYVGKIMVHYLGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          +  S +  D+Y  ID L D   +++ + +D ++
Sbjct: 61 LVVSEKSTDVYNLIDLLTDSFEKKIKRERDYVR 93


>UniRef50_B7IG48 Ribosomal subunit interface protein n=1 Tax=Thermosipho africanus
          TCF52B RepID=B7IG48_THEAB
          Length = 176

 Score = 73.4 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 46/95 (48%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M   ++    ++T A++ ++  +F K+++  +    + + L+ +  +    A +H  G +
Sbjct: 1  MDYRVSAKGFDLTNAVKNYIEKRFQKVDRVLEDEVHLDIKLEKDATSFIGKAMIHYLGKD 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +  +    D+Y  ID L D   ++L + ++ ++  
Sbjct: 61 LVVTETSDDIYNLIDILSDAFEKKLKREREYVRTR 95


>UniRef50_C1RNF7 SSU ribosomal protein S30P; sigma 54 modulation protein (Fragment)
           n=2 Tax=Micrococcineae RepID=C1RNF7_9CELL
          Length = 192

 Score = 73.4 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
           M++ + G + E++   R  + +K AK+EQ   R  +V V++  E            + T+
Sbjct: 1   MEIVVAGRHTEVSPRYRAHLESKLAKIEQLAPRAQRVDVLVSHEPNPRQSGSSEKVELTV 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              G  I A A   D YAA+D  + +L  +L + +D+ K H
Sbjct: 61  VDKGPVIRAEACADDAYAALDVALGRLLERLRRARDRRKDH 101


>UniRef50_A4AQL9 Putative uncharacterized protein n=1 Tax=Flavobacteriales
          bacterium HTCC2170 RepID=A4AQL9_9FLAO
          Length = 99

 Score = 73.4 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M ++I    +  +EA+ E ++AK  +L   +D I +  V  K E          +  L  
Sbjct: 1  MTIDIQYVQMPTSEAMNELLSAKLDRLATKYDWIIRAQVHFKQENDPTGKGKICEMELSA 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G  I A +   D   A    I  L +QL+K K  + + 
Sbjct: 61 PGPRIFAQSNEDDFEKAAAKTIKDLEKQLSKRKAIMNKR 99


>UniRef50_B5D3P6 Putative uncharacterized protein n=3 Tax=Bacteroides
           RepID=B5D3P6_9BACE
          Length = 113

 Score = 73.0 bits (179), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHV 56
           M++ I   + + ++ L  F+  K  KLE++ D I +V V LKV K    +   +   +  
Sbjct: 15  MEVRIQSIHFDASDKLEAFIQKKAEKLEKFCDNIMKVEVSLKVVKPETAMNKEAGVRVLA 74

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              E +A         +ID  ++ L++QL K K+KL+ 
Sbjct: 75  LNSEFYAEKISDTFEESIDVCMEALSKQLLKAKEKLQG 112


>UniRef50_A6Q4Q4 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Epsilonproteobacteria RepID=A6Q4Q4_NITSB
          Length = 180

 Score = 72.7 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV-N 57
           L+I G N ++T+ ++ ++      L +    I  +   +  +    K   T +  +HV  
Sbjct: 4   LHIYGKNFDLTDPIKTYIQDAADSLMKLNLDITGINATVSADERNGKKGFTFEFDIHVAK 63

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G +  + + +D+YAAID  + +  + L ++ DK+K H
Sbjct: 64  KGNVVITQKDKDVYAAIDLALARAKKVLRRYADKIKNH 101


>UniRef50_A8UI75 2-dehydro-3-deoxyphosphooctonate aldolase n=2
          Tax=Flavobacteriales RepID=A8UI75_9FLAO
          Length = 101

 Score = 72.7 bits (178), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHV 56
          M++N    N      L +F+  +  KL+ ++D+I Q  V LKVE    K     +A + V
Sbjct: 1  MKVNTQSVNFNADSKLIDFIQKRMDKLDMFYDKIIQSDVYLKVENTSDKENKIFEAKVSV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G       + +      D  I  L RQ+ K K+KL+ 
Sbjct: 61 PGDSFIVKKQCKTFEEGTDSAIASLERQIKKRKEKLRS 98


>UniRef50_B9Z3V7 Cold-shock DNA-binding domain protein n=1 Tax=Lutiella nitroferrum
           2002 RepID=B9Z3V7_9NEIS
          Length = 181

 Score = 72.3 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
           L I   N+  +EAL   +  K  KLEQ+F R+    V +        +   +     +  
Sbjct: 5   LQINYENLPESEALSTHIQQKLEKLEQFFPRLIGCNVTVGLPHRHSNQGEHYFVQIDMTA 64

Query: 57  NGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            G E+ ++    +D+Y A+    D   R L  H    + 
Sbjct: 65  PGTEVVSNRQNHEDVYVALRDAFDAARRMLEDHVRIRRG 103


>UniRef50_B4U9J0 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Aquificaceae RepID=B4U9J0_HYDS0
          Length = 200

 Score = 71.9 bits (176), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYF----DRINQVYVVLKVEKVTH-------- 48
           MQ+   G + EITE LR FV +K +K ++      +   ++ V +   +  H        
Sbjct: 1   MQIEFIGKHFEITEHLRAFVESKLSKFKRLLRETGEDQTEIVVTISSARAKHTDDNINKT 60

Query: 49  ---TSDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
                D  +++    GG +HA  E +D+Y AID ++D++ RQL K K++ 
Sbjct: 61  SIYRVDIDIYIKSNGGGAVHAWEEDKDVYTAIDKVLDEVERQLLKLKERR 110


>UniRef50_Q0BUA9 Ribosome-associated factor Y n=11 Tax=Acetobacteraceae
           RepID=Q0BUA9_GRABC
          Length = 236

 Score = 71.1 bits (174), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQ-YFDRINQVYVVLKVEKVTHTSDATLHV-NG 58
           M + ++G  +++++AL+E V ++   + + YFD+  +  V     +     D  LH   G
Sbjct: 35  MHITVSGKQIDLSDALQERVASQLDTISRKYFDQALEAQVTFSRLRSFFICDINLHAGRG 94

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             +    E  D   A D   + +A++L +++ ++  H
Sbjct: 95  LILRGEGEAADANGAFDDAAEHIAKRLRRYRRRMNAH 131


>UniRef50_A9G3G6 Cold shock protein n=1 Tax=Sorangium cellulosum 'So ce 56'
           RepID=A9G3G6_SORC5
          Length = 191

 Score = 71.1 bits (174), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATL 54
           MQ+ +T  ++  + +L E +  +  K+E++ D IN   VV++ +         +     L
Sbjct: 1   MQVELTFRHIGKSPSLEELIREQANKIERFNDHINSCAVVVERDHASMGTGGEYRVRVDL 60

Query: 55  HVNG-GEIHASAEGQD--MYAAIDGLIDKLARQLTKHKDKLKQ 94
           HV G  EI +        + AA+  +  +  RQL K  D+ + 
Sbjct: 61  HVAGKHEIVSEERAARNLLPAAVRDVFQRAGRQLKKLADEHRS 103


>UniRef50_C3CTB3 Ribosome-associated protein Y n=1 Tax=Bacillus thuringiensis
          Bt407 RepID=C3CTB3_BACTU
          Length = 181

 Score = 70.7 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M L +TG +V +TE ++  +  K   L ++      V V ++VEK   T   ++  NG  
Sbjct: 4  MNLTMTGKHVSLTEGMKFTMNKKLDFLNKFLKEDTVVSVTVQVEKRL-TISVSVPFNGEL 62

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
          I+A ++ +D Y A+D ++DK+ RQ+T  KD
Sbjct: 63 IYAKSKDEDFYVALDSVVDKVKRQITTAKD 92


>UniRef50_Q2SWQ3 Sigma 54 modulation protein, putative n=24 Tax=pseudomallei group
           RepID=Q2SWQ3_BURTA
          Length = 212

 Score = 70.4 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDA 52
           M+L   ++   +  + AL + V    AKLE+Y   I +  V +      K +        
Sbjct: 104 MKLPLEVSIQGMPRSAALEDAVARHAAKLERYCADIIRCRVSVILDDKHKHQGKPFGVHI 163

Query: 53  TLHVNGGEIHAS-AEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + + G EI ++    +D+Y A+        R L     K +  
Sbjct: 164 DVTIPGHEIVSNRESDEDVYVALRDAFSNAERMLDDAVGKRRDR 207


>UniRef50_A1SY46 Cold-shock DNA-binding domain protein n=5 Tax=cellular organisms
           RepID=A1SY46_PSYIN
          Length = 189

 Score = 70.0 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           L IT  ++  ++A+   +  K AKL++++D I   +VV++       +         L +
Sbjct: 5   LQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTL 64

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQ----LTKHKDKLKQH 95
             GE+            +D Y AI      + RQ    + K + K+K H
Sbjct: 65  PDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTH 113


>UniRef50_UPI000174494B hypothetical protein VspiD_16290 n=1 Tax=Verrucomicrobium
          spinosum DSM 4136 RepID=UPI000174494B
          Length = 115

 Score = 70.0 bits (171), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-----KVTHTSDATLH 55
          MQ++I+  N+++T A+ ++   +   +E     I   +VVL  +     K      A L 
Sbjct: 1  MQIHISPRNLKLTAAIHQYTAERIEAIEN-LGEIIATHVVLIHDETTKPKERFRVKAHLA 59

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          V G +IHA     D+YAA+D     LARQL K K  L  
Sbjct: 60 VAGPDIHADVADADLYAALDKASSVLARQLRKRKTALVD 98


>UniRef50_Q3YS76 Sigma 54 modulation protein/ribosomal protein S30EA n=4 Tax=canis
           group RepID=Q3YS76_EHRCJ
          Length = 197

 Score = 69.6 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYF--DRINQVYVVLKVEKVTHTSDATLH-V 56
           M + IT    ++T+ ++ +V       + ++F  D    V V L  +     S  ++  +
Sbjct: 1   MNIIITARGFDVTDNIKTYVERSVQDYITKFFADDSTVSVKVTLSKDANLFNSTISISDI 60

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHK-DKLKQH 95
               I  S      Y AID  ID L  +L KHK +K+ ++
Sbjct: 61  KSEFIRISKTSDTAYHAIDNSIDYLRDKLQKHKTEKINKY 100


>UniRef50_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
           tauri RepID=Q00W70_OSTTA
          Length = 184

 Score = 69.2 bits (169), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDA 52
           ++ + G ++EIT A+ E+V +K  +   + D   I +V V             V H ++ 
Sbjct: 51  KMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGEGSKGGVEHKTEV 110

Query: 53  TL-HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
           T+    G  +HA   G+++YA ID   D + R + KHK+K 
Sbjct: 111 TVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKH 151


>UniRef50_B0TQE4 Sigma 54 modulation protein/ribosomal protein S30EA n=4
          Tax=Gammaproteobacteria RepID=B0TQE4_SHEHH
          Length = 122

 Score = 68.8 bits (168), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE-KVTHTSDATLHVNGG 59
          M + IT    E+ + L + +   F K +++        V +K+E       +     + G
Sbjct: 1  MSIKITARGFELPDYLEQTIKEAFVKFDKFKISFYSKDVFMKLEPGHLFIVEIATKSDLG 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          +I +  E  ++  A +   D+L RQL KHK+K   H
Sbjct: 61 KIDSKGEANELMDAFNEAFDRLDRQLIKHKEKPYAH 96


>UniRef50_C3XP50 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Campylobacterales RepID=C3XP50_9HELI
          Length = 186

 Score = 68.8 bits (168), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------------KVTH 48
           MQ  IT  + E+T+A+++++ +    LE+Y   I    V++  +            K T 
Sbjct: 1   MQTIITSRHFELTQAMKDYIFSLTQSLEKYQLDILSTRVIVTYQEKKGSKKGEKKKKRTF 60

Query: 49  TSDATLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             D TL +     +  +   +D YAA+D  I ++ + L ++ DK  +
Sbjct: 61  GIDITLSLAHSNTLVINQIDKDFYAAVDLAIGRMHKILRRYHDKHNK 107


>UniRef50_A3XP15 Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella
           blandensis MED217 RepID=A3XP15_9FLAO
          Length = 120

 Score = 68.4 bits (167), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M  N   ++V  + AL +F   +  KL   +D I +  V  K E          +   L 
Sbjct: 20  MNYNFEYHDVAASAALEDFTKEQLDKLVNKYDFIVRADVFFKTENTSSDETGKIAGIRLS 79

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             G  + A    +  + ++     +L  QL K KDK+K H
Sbjct: 80  APGPRLFADHSSKSFHESVKEATRELNIQLKKRKDKMKSH 119


>UniRef50_D2RAS6 Ribosomal subunit interface protein n=15 Tax=Actinobacteridae
          RepID=D2RAS6_GARVA
          Length = 223

 Score = 68.4 bits (167), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATL 54
          M++ ITG + +I +  R+ V +K  ++        +V +VL  E            + T+
Sbjct: 1  MEIVITGRHTQINQRFRDVVESKMNRVTAIAPDAQRVQIVLTHEGNPRQADTAKRVEITV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLID 79
                I A A   D ++A+D  +D
Sbjct: 61 VAGSTVIRAEASSTDQFSALDMALD 85


>UniRef50_Q7UMU4 Probable sigma-54 modulation protein n=1 Tax=Rhodopirellula
          baltica RepID=Q7UMU4_RHOBA
          Length = 113

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-TSDATLHVNG- 58
          MQ+N++  +  +    +  V  K  KL + +DR+N + V + +E +     +  + V   
Sbjct: 1  MQVNVSARHGALQPGDQALVEEKALKLRRLYDRVNAIDVTIDLENLDKPHVEFRISVEHS 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ A AE   + AA+D  I K  +QL K K+K  +H
Sbjct: 61 DDLIAHAEATTVIAALDSAIPKAEQQLRKLKEKKTEH 97


>UniRef50_Q3Z6I7 Ribosomal subunit interface protein, putative n=5
          Tax=Dehalococcoides RepID=Q3Z6I7_DEHE1
          Length = 179

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M++ IT  N  +    R ++  K  ++ +   +I++  + L  E+           ATL+
Sbjct: 1  MEIQITTKNCRLDNRTRSYIQRKMGRITRILPQISEFRIELDEEQTRSQADHFILKATLN 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKL 92
               ++A    +++  A D  ++ L +Q+   K K+
Sbjct: 61 TGTDVLYAEERAENLLTAADRAVEVLNQQIDHAKGKM 97


>UniRef50_D2NS77 Ribosome-associated protein Y n=2 Tax=Rothia mucilaginosa
          RepID=D2NS77_9MICC
          Length = 213

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV----THTSDATLHVN 57
          ++NI G N+++TE L E+V  K  K  Q  D +  + V    +      +   + T+   
Sbjct: 4  EVNIYGRNIKVTERLEEYVNDKVQKFAQLGDNVKDIDVKFSKDGHLGGESIRVEITVVGT 63

Query: 58 GGEIHASAEGQDMYAAIDGLIDK 80
          G  + + A+G D +A  D    K
Sbjct: 64 GPVLRSEAQGHDKFAVFDETYGK 86


>UniRef50_B8DT99 Sigma 54 modulation protein/ribosomal protein S30EA n=6
          Tax=Bifidobacterium RepID=B8DT99_BIFA0
          Length = 228

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M + +TG +++I +  R+ V +K  ++        +V VVL  E            + T+
Sbjct: 1  MDIVLTGRHIQIKQKFRDVVESKMNRVTTIAPDAQRVQVVLSHEGNPRLHDTAVRVELTV 60

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
                + A A   D  +A+D  +DKL
Sbjct: 61 VAGSTVVRAEASSLDEVSALDLALDKL 87


>UniRef50_B7L313 Putative uncharacterized protein n=1 Tax=Methylobacterium
           chloromethanicum CM4 RepID=B7L313_METC4
          Length = 216

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHVNGGEI 61
           + +  +++ +  ALRE   A   ++  +YF R+N   V    +   +     + +    I
Sbjct: 10  IVVRSSSIGLGAALRERARAGVERVAAKYFGRLNAATVYFSRDGWGYRCTVNIDMGALRI 69

Query: 62  H-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               + G   +A  D  + K A+QL + K  L+ 
Sbjct: 70  VTGESLGFCCHAVFDAAMRKAAKQLRRLKRALRD 103


>UniRef50_Q30TL0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
          Tax=Campylobacterales RepID=Q30TL0_SULDN
          Length = 109

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M + +   ++ ++   +  +    A  ++Y   I  V V LK EK     +  +H+   E
Sbjct: 1  MNVQVHAKDITLSANAKGHIETAIAAFKKYSLDITTVNVNLKKEKKGVLVEFDIHIAHSE 60

Query: 61 -IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +  +   +D+  AID  ID+ ++ L +  D++  H
Sbjct: 61 PVVINQADEDLDTAIDLAIDRASKALRRLHDRVVSH 96


>UniRef50_A0LQL3 Cold-shock protein, DNA-binding n=2 Tax=Syntrophobacterales
           RepID=A0LQL3_SYNFM
          Length = 176

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           L I+ +NV I++A  E +  K  KL++  D++    V +++   +            L V
Sbjct: 5   LEISAHNVHISDATEELIREKAEKLDRINDKLIGCRVRVEIPHRSQRSGILYSVRIELAV 64

Query: 57  NGGEIHASAE-GQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            G +I    E  +D++AAI G  +   R+L +  +K + 
Sbjct: 65  PGRDIVIKREPDEDLHAAIVGSFETAQRRLKEVAEKQRG 103


>UniRef50_A6VX39 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Marinomonas RepID=A6VX39_MARMS
          Length = 130

 Score = 67.7 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT---SDATLHVNGG 59
           LNI+G++V+  E ++E V  K   L +  ++I  + V L  EK        +A++H+ G 
Sbjct: 4   LNISGHHVQSGEEVQEVVKDKMDHLARINNQITTINVTLNTEKHGTHELIVEASVHIPGH 63

Query: 60  EIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKLKQH 95
           ++ A  + +  +  A+D L+ KL +QL KHK K    
Sbjct: 64  DLFAMVQTEKQLKPALDMLVGKLEKQLIKHKAKHAGR 100


>UniRef50_C1DL86 Cold-shock domain-containing protein n=1 Tax=Azotobacter vinelandii
           DJ RepID=C1DL86_AZOVD
          Length = 189

 Score = 67.3 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           + I  + +E + A+   +  +  +LE++++RI    V        H           L +
Sbjct: 5   VQIHFHQIEPSPAIEAHIREQCDELEEFYERIIGCSVTFDAPHRRHHQGRLYQVKVHLTL 64

Query: 57  NGGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             G+IH+          +D Y AI      + RQL  +  K +
Sbjct: 65  PDGDIHSSQAHHDEHAHEDPYVAIRDSFRAVRRQLEDYARKRR 107


>UniRef50_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus
           lucimarinus CCE9901 RepID=A4SAX9_OSTLU
          Length = 132

 Score = 67.3 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 5   ITGNNVEITEALREFVTAKFAKLEQYFD--RINQVYVVLK-------VEKVTHTSDATL- 54
           + G ++EIT A+ E+  AK  K   + D   I +V V               H ++ T+ 
Sbjct: 3   VQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGEDSRGGHEHKTEVTVL 62

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              G  +HA   G+++YA ID   D + R + KHK+K   
Sbjct: 63  MTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHSG 102


>UniRef50_C0BJ85 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium
          MS024-2A RepID=C0BJ85_9BACT
          Length = 99

 Score = 67.3 bits (164), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHVN 57
           ++    N      L+EF   +  KL  ++++I +++   KVE  +      ++  + + 
Sbjct: 3  NVHFRAVNYTADVTLKEFAQQRLGKLTTFYNQIIEMHCFTKVENTSDKINKWAELKIEIP 62

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          G  +      +    AID   D   R L + K+K+K
Sbjct: 63 GENVVVKKMCKTFEEAIDSAADSAERILKRRKEKIK 98


>UniRef50_A3ZLA7 Probable sigma-54 modulation protein n=1 Tax=Blastopirellula
          marina DSM 3645 RepID=A3ZLA7_9PLAN
          Length = 104

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 17 REFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT-SDATLHV-NGGEIHASAEGQDMYAAI 74
          +E ++ K  KL + F+RI  V V + +E       +  +      +  A+     +  A+
Sbjct: 6  QETISEKVQKLTRLFERITSVDVTVDLEHNDKPGVELRVTAERTDDFVAADSCSSLLGAL 65

Query: 75 DGLIDKLARQLTKHKDKLKQH 95
          D  I K+ +QL KHK++LK H
Sbjct: 66 DNSIHKMEQQLRKHKERLKDH 86


>UniRef50_B1ZUV3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Opitutus terrae PB90-1 RepID=B1ZUV3_OPITP
          Length = 126

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLHV 56
           ++ ++G ++E+T +L+ FV  K  +L ++ +RI +V V L+ +          +   + +
Sbjct: 8   EVIVSGIHLELTPSLKYFVREKAERLFRHEERIIRVRVELECDSKEAVATRFKAKGHVEI 67

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95
           +G +++A  +  + + AI  LIDKL R L+K     K+++H
Sbjct: 68  HGPDLNAVVQADECHKAISLLIDKLDRMLSKRHHMYKVRRH 108


>UniRef50_C0ADT6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutaceae bacterium TAV2 RepID=C0ADT6_9BACT
          Length = 155

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55
           +L ++G ++E+T +L+ FV  K  +L ++ +RI ++ + L+ +           +   + 
Sbjct: 38  ELIVSGIHLELTPSLKTFVQEKADRLFRHEERILRIRIELECDQQTRDPSQRFIAKGHMQ 97

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD--KLKQH 95
           +NG   +AS    + + A++ L++KL R + +     K+++H
Sbjct: 98  INGPAFNASVVSGECHNAVNLLVEKLDRMIRRRSRFFKVQRH 139


>UniRef50_B3QW75 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium
           ATCC 35110 RepID=B3QW75_CHLT3
          Length = 109

 Score = 66.9 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH----TSDATLHVN 57
            +  T  +      +  +         +Y+  I   +++L  +K        ++   HV 
Sbjct: 12  NVQFTLRHSSNHRDIEAYAKDAIKAFHKYYTDILDCHIILDHQKNDKEQNKIAEIKAHVP 71

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
                +  +G     AID  +  + +QL KH+DK
Sbjct: 72  SHTFVSKEQGPTYEVAIDTCVSNICKQLKKHRDK 105


>UniRef50_B3RGS8 Sigma 54 modulation factor n=1 Tax=Escherichia phage rv5
          RepID=B3RGS8_9CAUD
          Length = 105

 Score = 66.5 bits (162), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59
          MQ+ ITG NVEITE +  F++ K +KLE+     N   V +KVE       A +  N G 
Sbjct: 1  MQIEITG-NVEITEGMVSFISHKMSKLERLHPSANYARVSVKVENDHQEVMAFIFDNSGK 59

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTK 87
          E+ A A+G D Y A D ++D  ARQL K
Sbjct: 60 EVIAKAKGSDAYEATDRMVDVAARQLAK 87


>UniRef50_C7RTG4 Putative sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RTG4_9PROT
          Length = 128

 Score = 66.5 bits (162), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           MQ+ I     +++  LRE V  +    L+     ++++ V L                 +
Sbjct: 1   MQIVIQARGFDLSAGLREHVERRLHFALDWAQYHVSRIVVSLSDINGPRGGEDKRCQIRV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + G  E+       D+Y AID  +D++ R L++   + ++H
Sbjct: 61  AMAGAPEVAIDDIESDLYLAIDRAVDRVGRTLSRRLARQREH 102


>UniRef50_Q1D1Y2 Ribosomal subunit interface protein n=2 Tax=Cystobacterineae
           RepID=Q1D1Y2_MYXXD
          Length = 119

 Score = 66.5 bits (162), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRIN-QVYVVL-----KVEKVTHTSDAT 53
           M++ + G ++ +++AL+ +V     + +E++ D    ++ + L         +      T
Sbjct: 1   MKVLLRGVHLNLSDALKSYVDEHLVRHIERFADDEAAEIDISLVDTNGPKGGMDKECRVT 60

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           + + G   +H +     ++ AID   D+L   L +   K + 
Sbjct: 61  VRLPGLSSVHVTETADSLFPAIDASRDRLETSLKRMLGKRRD 102


>UniRef50_A4BJM4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297
           RepID=A4BJM4_9GAMM
          Length = 115

 Score = 66.5 bits (162), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           MQ+ I   N+++T +LR++V  + +  L     +I +V V+L                 +
Sbjct: 1   MQIEIRSKNIDMTPSLRDYVRRRLSFALGARAGQIQRVQVMLSDINGPKGGNDKHCRILV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +V    ++       ++  AID    + +R LTK   KL++
Sbjct: 61  NVPYIKDVVIEDCQTELKGAIDRAAARTSRTLTKRLMKLQK 101


>UniRef50_A5G2U9 Cold-shock DNA-binding protein family n=1 Tax=Acidiphilium cryptum
           JF-5 RepID=A5G2U9_ACICJ
          Length = 186

 Score = 66.1 bits (161), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHV 56
           L IT  +++ + AL   +  K   L ++  RI + +V+++       +   + +   + V
Sbjct: 5   LQITFKDIDRSPALEARIREKAEALSRFEARILRCHVIIEAPHRHHHKGKLYRARIEIAV 64

Query: 57  NGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
             G+I  + E       +D Y A+    D   R+L  H  +L  
Sbjct: 65  PRGDIVINRESPENHAHEDPYVAVRDAFDAAVRKLEDHARRLDD 108


>UniRef50_C0A867 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Opitutaceae bacterium TAV2 RepID=C0A867_9BACT
          Length = 126

 Score = 66.1 bits (161), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           +L + G ++ +T+A++  +     +L ++  RI+++ + +++++         +   + +
Sbjct: 12  KLLLRGVHLNLTDAMKASIEGMVERLVRHEPRIDRIRIDVELDRVHSGPQMFNAKGIIEL 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G ++ AS   +D Y ++  LI+KL R + K    LK  
Sbjct: 72  RGPDMIASVSSEDAYKSVHLLIEKLDRMIRKRDSALKGR 110


>UniRef50_C7M130 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Acidimicrobium ferrooxidans DSM 10331
           RepID=C7M130_ACIFD
          Length = 182

 Score = 66.1 bits (161), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKV-----THTSDATLH 55
           M +++      +TE  R  V  + A+LE+Y     +V V ++            ++ T  
Sbjct: 1   MAVDLRCRGCTLTEQQRAHVEDRIARLEKYLGAPERVEVHVERAGNPANPDRVVTEVTYV 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           V+   + A   G+    + D   ++L R+L + K +L   
Sbjct: 61  VSKAVVRARGVGETELESFDRAEERLKRRLERLKGRLVAR 100


>UniRef50_B9KIL8 Putative uncharacterized protein n=2 Tax=Anaplasma marginale
          RepID=B9KIL8_ANAMF
          Length = 104

 Score = 65.3 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRI--NQVYVVLKVEKVTHTSDATLHVN 57
          M + IT    + T +++ +V    +  L +Y        V VV+  E    T+  ++H +
Sbjct: 1  MNVIITCRGYKATASIKSYVEDSISSHLGKYLHDSPQINVRVVMAKEAHMFTACVSIHED 60

Query: 58 GGEIH-ASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            E   AS   + +Y A+D  +  +A  L K+K++   
Sbjct: 61 HHEFVNASKSAETVYKAVDAAVTHVANGLRKYKEEKTD 98


>UniRef50_UPI0001C315AE sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C315AE
          Length = 117

 Score = 65.0 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT-----HTSDATLH 55
          M++ + G N  +T+A RE +  +F K+ +    + Q+ V L  ++         ++ATL+
Sbjct: 1  MRIEVKGRNTSVTQAQREQIERRFRKIARQVSELAQLEVELSEQRNPSIPEAQVAEATLY 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKH 88
          + G  + A AE  DM  AI+   ++L +Q+ +H
Sbjct: 61 LKGVTLRARAEAGDMGHAINLCEEQLFKQVKRH 93


>UniRef50_A5IBA4 Sigma 54 modulation protein YhbH n=4 Tax=Legionella pneumophila
           RepID=A5IBA4_LEGPC
          Length = 190

 Score = 65.0 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHV 56
           + +T  N++ ++A+         KL+  +D+I    VV++     H           L V
Sbjct: 5   IQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRIDLTV 64

Query: 57  NGGEIHASAE------GQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              E+  S E       +D+Y ++    + + RQL  + ++ + H
Sbjct: 65  PDAELVVSRESSNKHAHEDVYVSLRDAFNAIERQLKNYANQRRGH 109


>UniRef50_A6DIV0 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa
          HTCC2155 RepID=A6DIV0_9BACT
          Length = 115

 Score = 65.0 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE 60
          M++ +   + ++ + ++  +  +  K +    ++    V+L         +  +      
Sbjct: 1  MEIIVASRHFKVQKDVKTQIVEEMKKFDTCASKLTTAEVILNNIHHNIHVEIIIRGKHLN 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + AE  D+  +      K+  QL K + K+K H
Sbjct: 61 CKSEAETDDLLKSFYLAFKKMRNQLDKRRTKVKNH 95


>UniRef50_D1AUL6 Putative ribosome-associated inhibitor A n=1 Tax=Anaplasma centrale
           str. Israel RepID=D1AUL6_ANACI
          Length = 197

 Score = 64.6 bits (157), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKF-AKLEQYFDR--INQVYVVLKVEKVTHTSDATLHVN 57
           M + I     + T +++ +V     + + +Y          VV+  E    T+  ++  +
Sbjct: 1   MNIIIACRGYKATASIKSYVENSIISHVGKYLRDSPEINARVVMAKEAHMLTACVSICED 60

Query: 58  GGEIH-ASAEGQDMYAAIDGLIDKLARQLTKHK-DKLKQH 95
             E   AS     +Y A+D  +  +A +L K+K +K+ +H
Sbjct: 61  HHEFVKASKSADTVYKAVDDAVAHIASKLRKYKGEKIDRH 100


>UniRef50_B4UF98 Cold-shock DNA-binding domain protein n=4 Tax=Anaeromyxobacter
           RepID=B4UF98_ANASK
          Length = 195

 Score = 64.6 bits (157), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH-------TSDATLH 55
           L +   +VE +E L E V     +LE++  RI    V L+     H            L 
Sbjct: 5   LQLAWIHVEPSEPLAERVREAVRRLERFHGRITGCTVALEAPSRHHRNTGAQYRVRIELR 64

Query: 56  VNGGEIHA------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             GG          S +  D+Y A++     + RQL   + ++   
Sbjct: 65  FPGGRAVVGRAPPRSRDRADLYTAVNAAFRDVRRQLEDRQRRMDGR 110


>UniRef50_Q14ME0 Putative uncharacterized protein n=1 Tax=Spiroplasma citri
           RepID=Q14ME0_SPICI
          Length = 125

 Score = 64.2 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQY----FDRINQVYVVLKVEKV-THTSDATLH 55
           M+  I   N+ IT+A+ + +   F KL +Y     + +  V +    E      +   + 
Sbjct: 1   MEYKIRSKNIIITDAMDQHLVDTFNKLLKYKQVNENDLVHVDIEFTKENNIVIHTAIDIR 60

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                + A     D Y A+D  + K+  QL K K K +  
Sbjct: 61  GRNNFLKAEVRNSDFYKAVDQSLYKVEEQLRKIKGKQEDR 100


>UniRef50_B5JNT4 Ribosomal subunit interface protein n=1 Tax=Verrucomicrobiae
           bacterium DG1235 RepID=B5JNT4_9BACT
          Length = 126

 Score = 63.8 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLH 55
            + I G ++E+TE+L+  V     KL ++   I ++ V L++E      +    +   + 
Sbjct: 6   NVEIVGRHLELTESLKAKVNEVVEKLYEHDSGITRIRVELEMELHSKTHQNEFIAKGHVV 65

Query: 56  VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                  ASA G D+Y AI  L +KL R L ++K + +
Sbjct: 66  DRHDHFDASALGDDLYQAIGSLAEKLDR-LIRNKSRRR 102


>UniRef50_Q11G12 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Chelativorans sp. BNC1 RepID=Q11G12_MESSB
          Length = 109

 Score = 63.8 bits (155), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHVN 57
            +T  N+E ++A+   V  +  ++E+ FDR+    VV+      K+          L + 
Sbjct: 6   KVTFRNMERSDAIEGHVMRRVEEVEKCFDRVIGCDVVIEAAQKRKLSGRAFKVHVALQIP 65

Query: 58  GGEIHAS------AEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           G ++  +         +++  AI        R+L   KD++  H
Sbjct: 66  GPDVVVTRLVARSKAAENVNLAIHEAFSAATRRLLARKDQMTGH 109


>UniRef50_C8WD98 Sigma 54 modulation protein/ribosomal protein S30EA n=10
          Tax=Sphingomonadales RepID=C8WD98_ZYMMN
          Length = 200

 Score = 63.0 bits (153), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKL-EQYFDRINQVYVVLKVEKVTHT-SDATLH-VN 57
          M + I+G+ ++   ALRE+V    +++  +YF +     V     +      D  +H + 
Sbjct: 1  MDIRISGHQIDTGAALREYVNDHLSQIVSKYFPKCLSASVTFGNRRHAIISCDIIIHAMR 60

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + AS   +D +AA D    K+ +QL +H  +L+  
Sbjct: 61 DIILKASGIDKDAHAAFDQAAAKIEKQLRRHHRRLQTR 98


>UniRef50_B4WI97 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WI97_9SYNE
          Length = 142

 Score = 63.0 bits (153), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDA 52
           M++   I+   V  TEAL   V  K AKLE+++  I+  ++ ++           +    
Sbjct: 1   MRVPPEISYRGVNKTEALETLVAEKIAKLEKFYREISSCHLAIEKVHDHPNSGSPYRVRL 60

Query: 53  TLHVNGGEIHASAEGQD-------MYAAIDGLIDKLARQLTKHKDKLKQH 95
            + V         +  D       + A I    D   RQL +  ++   H
Sbjct: 61  DITVPEDREVVVDKSPDKGVQYQPLEAIIRDTFDIANRQLKELNEQQHNH 110


>UniRef50_A4CQ98 Sigma-54 modulation protein n=1 Tax=Robiginitalea biformata
          HTCC2501 RepID=A4CQ98_9FLAO
          Length = 89

 Score = 62.6 bits (152), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 18 EFVTAKFAKLEQYFDRINQVYVVLKVE----KVTHTSDATLHVNGGEIHASAEGQDMYAA 73
          EF   +  KLEQ++DR+ +  V LKVE    K    ++  + V         + +    A
Sbjct: 2  EFTQRRLDKLEQFYDRVIRAEVFLKVENISEKENKVAEIKMQVPKDTFVVKKQCKSFEEA 61

Query: 74 IDGLIDKLARQLTKHKDKLKQH 95
          +D     L R+L K K K + +
Sbjct: 62 VDSACSSLERKLVKKKRKPRAY 83


>UniRef50_B3CQ21 Probable sigma(54) modulation protein n=2 Tax=Orientia
           tsutsugamushi RepID=B3CQ21_ORITI
          Length = 116

 Score = 62.6 bits (152), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 1   MQLNITG--NNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVE-KVTHTSDATLHV 56
           M + I+G      +   L ++V  K   +  +YFD +    V    E          ++ 
Sbjct: 1   MNIIISGSPQYNSVKFNLNQYVNRKIINVANKYFDNLKAPNVHFSKEEHNQFKCHIVVNP 60

Query: 57  ---NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                  I+++    D++A+ D    KL +QL ++K KLK 
Sbjct: 61  ITKQHRIINSTGYSNDVFASFDLARVKLEQQLRRYKSKLKD 101


>UniRef50_B1Z8J5 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Methylobacterium RepID=B1Z8J5_METPB
          Length = 163

 Score = 62.3 bits (151), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLE-QYFDRINQVYVVLKVEKVTHTSDATLHVNG-G 59
            + +  +NV++   L ++  A   ++  +Y   +N   V    E   +     L +    
Sbjct: 9   NILVQSSNVDLGSVLPDYARAGIMQVASKYIGNLNIAAVHFNREGGGYRCTVNLQMGALP 68

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +   A+ ++ YAA    ++K+A+QL + K +L++
Sbjct: 69  MMSGEADHRNAYAAFRRALEKVAKQLRRAKRELRE 103


>UniRef50_D2QEF9 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM
          74 RepID=D2QEF9_9SPHI
          Length = 121

 Score = 62.3 bits (151), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 5  ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK------VTHTSDATLHVNG 58
          +        ++L +F+ AK  KL+ + DRI    V L++E            +  L + G
Sbjct: 1  MHAVKFTADQSLLDFIQAKLDKLDTFHDRIISGEVFLRLEGADSNKVKEKIVEVRLLLPG 60

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           E+      +   +A D ++D L  +L + K K   
Sbjct: 61 KELFVKEHDKSFESATDRVMDVLKDKLVRFKQKRND 96


>UniRef50_A0LCJ5 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Magnetococcus sp. MC-1 RepID=A0LCJ5_MAGSM
          Length = 103

 Score = 61.5 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV--EKVTHTSDAT--LHV 56
          M+L + G  ++I   LR+ +T +   L+Q F  I    V ++         ++    ++V
Sbjct: 1  MELKLEGRQMDIGNELRDRITTRLQTLDQRFGPITHARVSIERKSHNNEQRAEVKTVINV 60

Query: 57 NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           G  I ++ E   +  A++  +D L  +L    +K K+
Sbjct: 61 PGNTISSTKEAATVIPAVNEALDTLTMELQTWAEKNKK 98


>UniRef50_B8HME4 Cold-shock DNA-binding domain protein n=8 Tax=Cyanobacteria
           RepID=B8HME4_CYAP4
          Length = 207

 Score = 61.5 bits (149), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKV------EKVTHTSDA 52
           M++   IT  +V    A+   V  K  KLE+  D I+  ++ ++           +    
Sbjct: 1   MKVPPEITYRDVPKNAAIESLVQEKITKLERVCDHISSCHIAIEKIHDRPRRGSPYRVRL 60

Query: 53  TLHV-NGGEIHASAE--GQDMY----AAIDGLIDKLARQLTKHKDKLK 93
            + V    E+ A +    ++ Y      I     K  RQL +   + +
Sbjct: 61  DITVPPSHELVAESNPGEENQYVELDTVIRDAFQKAERQLRELSRQQR 108


>UniRef50_A9CX73 Probable sigma54 modulation protein n=2 Tax=Rhizobiales
          RepID=A9CX73_9RHIZ
          Length = 181

 Score = 60.7 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 10 VEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GGEIHASAEG 67
          +EI E+ R  +    +  + +YFD     +V ++       +D  +H++ G  +HA+ E 
Sbjct: 1  MEIGESFRTRIDDHVSGAVRKYFDGGFSSHVTVEKSGSRFQADCKIHLDTGVVLHATGEA 60

Query: 68 QDMYAAIDGLIDKLA 82
          QD   A D   +++ 
Sbjct: 61 QDPQPAFDAAAERIE 75


>UniRef50_Q21KB8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Gammaproteobacteria RepID=Q21KB8_SACD2
          Length = 105

 Score = 60.0 bits (145), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 5   ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHVNG 58
           +   +++ + AL + +  K  KL +Y D I    VVL      K +   + +   + + G
Sbjct: 7   VVYRDLDTSPALNDVIYKKMEKLHRYSDSIIHSKVVLDSPHNQKHKGKLYRASIEIGLKG 66

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             +  S +  +++ A+        R++ +   K +
Sbjct: 67  HPLTVSQDAPNVHIAVRDAFAAAERKIKEDNSKRR 101


>UniRef50_UPI00016C56FB hypothetical protein GobsU_19047 n=1 Tax=Gemmata obscuriglobus
          UQM 2246 RepID=UPI00016C56FB
          Length = 112

 Score = 59.6 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK---VTHTSDATLHVN 57
          MQ+ ++  + ++ + +++ +  K  KL  +F R+  + + + + +      + +      
Sbjct: 1  MQVTVSVRHGQLGDDIQQQLKEKGEKLLHFFSRLTMIEITVDLHRTHDGNMSVEVRATAE 60

Query: 58 G-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             E   S   +D+ AA +     + +Q+T +K+K++ H
Sbjct: 61 HKHEFVGSDHAEDVLAAFNKAAAHVKQQVTHYKEKIQDH 99


>UniRef50_D2MK58 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria
           sp. WGA-A3 RepID=D2MK58_9BACT
          Length = 110

 Score = 59.6 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT----SDATLHV 56
           M L I   NV +T   ++ +  +   L+  +D I    + L            ++A + +
Sbjct: 1   MDLKIDSRNVGMTPRWKQEIQDRVTTLQTEYDNITHARITLTKNPHHKKGDNNAEALIVL 60

Query: 57  ---NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                  + A  E +    AI         ++ K ++K   +
Sbjct: 61  NLPPRHTVTARKEAKSFEEAIRSAFKAAMTEVKKFREKPNSY 102


>UniRef50_Q2IHD0 Putative sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Anaeromyxobacter RepID=Q2IHD0_ANADE
          Length = 167

 Score = 59.2 bits (143), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDR-INQVYVVL-----KVEKVTHTSDAT 53
           M+L I  +++ +   L  F+     + L +  D   +++ V L     K   V      +
Sbjct: 34  MKLVIHSHHLTLPPDLGAFLRKHVTRPLARLQDDSASELSVHLGDARRKKGGVDQECRLS 93

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
             + G   +H  +   D++ A+    ++L R + +  +K++  
Sbjct: 94  FRMPGARTLHVESVQDDLHTALLDAAERLKRLVKRELEKMRSR 136


>UniRef50_Q2RYB7 Ribosomal subunit interface protein, putative n=1
           Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB7_RHORT
          Length = 126

 Score = 58.8 bits (142), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLK----------VEKVTH 48
           MQ+   I    ++ ++A+ E +  K AKLEQ+   I    VV++                
Sbjct: 1   MQIPVQIVFRGIDHSDAVEERIREKAAKLEQFHKNITACRVVVEMHHKNTSHVHKRGEPF 60

Query: 49  TSDATLHVNGGEIHASAE---------GQDMYAAIDGLIDKLARQLTKHKDKLK 93
                + V G +++A +           +D+  A+    + + RQL    ++ +
Sbjct: 61  LISVQVSVPGEDLNAVSSHGKDADLKAHEDVGIALRDAFESMERQLRDIAERKR 114


>UniRef50_A1WVP9 Ribosomal subunit interface protein, putative n=2
           Tax=Ectothiorhodospiraceae RepID=A1WVP9_HALHL
          Length = 115

 Score = 58.4 bits (141), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 1   MQLNIT-GNNVEITEALREFVTAKFAKLEQYF-DRINQVYVVLK-----VEKVTHTSDAT 53
           MQ+ I  G  V I++AL E +      +++ F +++ ++ V  +        V       
Sbjct: 1   MQIQINPGAGVHISDALEESIREALGAVDRRFGEQLTRIEVHFQDINGPKGGVNKHCRIE 60

Query: 54  LHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
               G + + A     D Y A  G   KL R L     KL  
Sbjct: 61  ARPRGLDPVLAENTADDAYDAARGAAKKLERVLDGRLGKLAD 102


>UniRef50_UPI00006DCB56 hypothetical protein CdifQ_04002840 n=1 Tax=Clostridium difficile
          QCD-32g58 RepID=UPI00006DCB56
          Length = 57

 Score = 58.0 bits (140), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 30/49 (61%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT 49
          MQ+ ++G  +++T+ ++ +V  K ++LE+Y D  ++V V +  +K    
Sbjct: 1  MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQK 49


>UniRef50_B1ZU16 Sigma 54 modulation protein/ribosomal protein S30EA n=1
          Tax=Opitutus terrae PB90-1 RepID=B1ZU16_OPITP
          Length = 131

 Score = 57.6 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT----HTSDATLHVN 57
          +L I G  + +T+ALR  +  K  +L ++  RI +V V L  E         +   + ++
Sbjct: 12 KLVIRGIRLWLTDALRSTIETKAERLFRHEPRIIRVRVDLDREHRNGVALFVAKGRIELH 71

Query: 58 GGEIHASAEGQDMYAAIDGLI 78
          G ++ AS    D Y +ID LI
Sbjct: 72 GPDLLASVVSNDAYKSIDWLI 92


>UniRef50_A6CY25 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
          RepID=A6CY25_9VIBR
          Length = 105

 Score = 57.6 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRIN--QVYVVLKVEKVTHTSDATLHVNGGE 60
          + IT  +V+IT +++  +  KFA ++ +F  I+  + +++          + T+H++  +
Sbjct: 1  MQITSMHVDITPSMKTLIEEKFAHIQGHFHSIDQEKCHIIYHESYRLFEVEFTVHLDHEQ 60

Query: 61 IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                      A+      +   L KHK KL 
Sbjct: 61 FFTKKSNATFAIALQEATQAVLHSLEKHKTKLS 93


>UniRef50_A4VGA6 Ribosomal subunit interface protein, putative n=2 Tax=Pseudomonas
           RepID=A4VGA6_PSEU5
          Length = 140

 Score = 57.3 bits (138), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDAT 53
           M + +  N++  +  L E+V      +LE++ D + +V V +  E               
Sbjct: 1   MHVQVNSNHIPGSVELHEWVGTTVEDRLERFDDFLTRVEVHISDENAQKAGADDKRCQIE 60

Query: 54  LHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
               G + +  + + + +  A+DG  DK+   L     KL   
Sbjct: 61  ARPKGHQAVSVTHKAESLQLAVDGAADKMQHALENLMGKLDTR 103


>UniRef50_Q11EM9 Cold-shock protein, DNA-binding n=1 Tax=Chelativorans sp. BNC1
           RepID=Q11EM9_MESSB
          Length = 194

 Score = 57.3 bits (138), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 18/113 (15%)

Query: 1   MQL--NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDA 52
           MQ+   I  +  E ++   + + A+  KL+ Y DRI    V +                 
Sbjct: 1   MQVPLQIAFHKAEKSDWAEQEIRARVDKLQTYHDRIIGCRVTVDQRARNVEGTLPPVVRI 60

Query: 53  TLHVNG--GEIHASA--------EGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            + + G    I A          +  D+  AI+   +   R+L + K+     
Sbjct: 61  EISLPGTAPVIVAYEPDRLQQKYQSPDLGNAINDAFNLAERRLAQIKEARDGR 113


>UniRef50_Q1IU45 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis
           Ellin345 RepID=Q1IU45_ACIBL
          Length = 348

 Score = 56.9 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQ----YFDRINQVY--VVLKVEKVTHTSDATL 54
           M ++I+   +E T  +   V     KLE+    +   +  ++  V+ K  +        L
Sbjct: 1   MNVHISYKGLEKTPDVESTVKLHLKKLERRLQVFRPELVSLHGSVLQKSPRAGFVVALNL 60

Query: 55  HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +   +I A     +   A+    D L  Q+++HK  L+ 
Sbjct: 61  KLPTTDIAAEQANPNSAVAVKAAFDSLIGQISRHKGALRN 100


>UniRef50_Q1D2Z7 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1D2Z7_MYXXD
          Length = 121

 Score = 56.9 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ I   N+ +TE LR +   +    L++  DR+ +V V L+        V       L
Sbjct: 1   MRVEIRARNIPLTETLRTYAERRVRFALDRLSDRVKEVVVRLEDANGPKGGVDQVCRVAL 60

Query: 55  HV-NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + +G E+   +   ++ AAID  +++ +  +T+   + ++
Sbjct: 61  RLEHGRELAIESSDTNLLAAIDRTLERASNAVTRAVGRAQR 101


>UniRef50_D0MIH4 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Rhodothermus marinus DSM 4252 RepID=D0MIH4_RHOM4
          Length = 109

 Score = 56.9 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL-----KVEKVTHTSDATLHVN 57
                 N E+T+AL+  V  +  KL +    I  V V +           + +   ++  
Sbjct: 8   FEYYSENHELTDALKAKVEQRIQKLAKKHHDITGVSVAIQRVEHTHTPHAYRARVVVYHK 67

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              + A+     +  ++   +D + RQ+ + + KL++
Sbjct: 68  PENVVATEVAPTVEESLLRALDSVERQVREQRRKLRE 104


>UniRef50_D2QHG3 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74
           RepID=D2QHG3_9SPHI
          Length = 113

 Score = 56.9 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFD-RINQVYVVLKVE----KVTHTSDATLHV 56
           +L+I   N+ + +A R+ +     KL +Y+   +    V L+VE        +      V
Sbjct: 11  RLSINAVNITVDDAFRDRIAQALVKLRRYYSGDLITAEVFLRVEAHGGPNDKSLRIVYGV 70

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTK 87
            G    A  EG +    +  +  KL  QL +
Sbjct: 71  PGTGAFAEEEGDNWDTMLHTVTGKLKHQLER 101


>UniRef50_A4VJU5 Ribosomal subunit interface protein, putative n=5 Tax=Pseudomonas
           RepID=A4VJU5_PSEU5
          Length = 104

 Score = 56.5 bits (136), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 1   MQLNITGNN-VEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           MQ+ +  N+ + +T  L E + A    +L+++ D + +V V L  E              
Sbjct: 1   MQVLVNSNHSISVTADLEERIKATVETELDRFDDHLTRVEVHLNDENSNKSGPHDKRCQM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              V G + I A+ + + +  AI+G  +KL   L+   DKL +H
Sbjct: 61  EARVKGHDPISATHKAETLDLAINGAAEKLNHALSHALDKLNRH 104


>UniRef50_A6W1F5 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Marinomonas sp. MWYL1 RepID=A6W1F5_MARMS
          Length = 137

 Score = 56.1 bits (135), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ +    + +T++L+ +V  + +  L   +D I QV V L                 +
Sbjct: 1   MRIKVKARRLALTKSLKAYVKRRLSFALNSRYDNIQQVIVTLTDVNGPKGGEDKHCQVLV 60

Query: 55  HVNGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +NG  E+  S +  DMY+AID    + +R +T+  ++L+
Sbjct: 61  KINGQKEVVISEQQADMYSAIDSAAGRTSRTVTRRIERLQ 100


>UniRef50_C3XBE7 Predicted protein n=2 Tax=Oxalobacter formigenes RepID=C3XBE7_OXAFO
          Length = 119

 Score = 55.7 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M   I    ++  EA++E++  +    L    + I+ + + L                 L
Sbjct: 1   MAPTIITKGIKAGEAIQEYIQERMDTMLSHTQNSIDYIMIRLSDTNRIKSGFKKRCLIQL 60

Query: 55  HVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            + G   I  +    DM +A D    + +R L K   K K+
Sbjct: 61  SLPGMSPIVVTEFAADMKSAFDSATRRASRLLNKTLSKAKE 101


>UniRef50_A4XWR8 Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina ymp
           RepID=A4XWR8_PSEMY
          Length = 133

 Score = 55.7 bits (134), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 1   MQLNITG-NNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVE------KVTHTSDA 52
           MQ+ +   N++  + AL + V  +   KL+++ D + ++ V    E              
Sbjct: 30  MQVMVNSDNHIHGSAALEDRVRGRVTDKLKRFEDHLTRIEVHFNDENSHKSGGQDKRCQL 89

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
              + G + +  S     +  A++G IDKL   L ++  K +
Sbjct: 90  EARLKGRDPVSVSHNADQLEQALEGAIDKLGTVLERNIGKQR 131


>UniRef50_A5ETX8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Bradyrhizobium sp. BTAi1 RepID=A5ETX8_BRASB
          Length = 307

 Score = 55.3 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 4   NITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE------KVTHTSDATLHVN 57
           NI   N+     LRE + +K   LEQ+  R     V L +E      K  H +  TL + 
Sbjct: 15  NIVTRNLHGHPFLREKLYSKIRALEQHLQRFPPDAVHLLIELDRHARKEEHRAVLTLRLP 74

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              +HA    +    A+   +  L ++L   K+K+++
Sbjct: 75  SHILHADKSAKSAITALTHAVKALLQELKALKEKMRE 111


>UniRef50_C6QHD0 Cold-shock DNA-binding domain protein n=1 Tax=Hyphomicrobium
           denitrificans ATCC 51888 RepID=C6QHD0_9RHIZ
          Length = 121

 Score = 55.3 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT------SDATLHV 56
           + I+  ++E + A+   V  +  KLEQ+  R+    VV+  E+  H           L V
Sbjct: 5   VQISFEHLEHSGAIEHRVREQLEKLEQFCGRLTAARVVVAREQRRHHKGDNYSVRLLLSV 64

Query: 57  NGGEIHA-------SAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            G E  A       +   +D++  I        R+L     K ++ 
Sbjct: 65  PGAEDIAITHNTTDTGRHEDIHVVISDAFAAARRRLQDFVGKRQRR 110


>UniRef50_Q1PZB4 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1PZB4_9BACT
          Length = 176

 Score = 55.3 bits (133), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVT------HTSDATLHV 56
           L I   + ++TEA +  +     KL+  +DRI +  VV++  +        +     + +
Sbjct: 5   LEIVARDFDLTEANKADIHKYAEKLDAAYDRIIRCRVVVEALRHREHKGLFYNVKVVVTI 64

Query: 57  NGGEIHASAE-GQDMYAAIDGLIDKLARQLTK----HKDKLKQH 95
            G E+    +  +D + A+    + + R+L         K+K H
Sbjct: 65  PGTELVIKRKPNEDFHLAVKDSFNAMRRKLEDFVVQRSGKVKHH 108


>UniRef50_B4D6Y7 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y7_9BACT
          Length = 372

 Score = 55.3 bits (133), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 4   NITGNNVEITEALREFVTAKFAKLE----QYFDRINQVYVVLKV--EKVTHTSDATLHVN 57
           +I   ++     +RE +  K A L      +      + VVL    +K  +    TL + 
Sbjct: 13  HIVNRHLHPGVTVREKLAEKIAALSQLLVHFPPDSIHLQVVLDKMAKKGLYEVRLTLRLP 72

Query: 58  GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              +HA   G D+   I+  ++ L R++   K  L+ 
Sbjct: 73  SNILHAEKTGTDLLVTINTAVNALKREVMSLKADLRG 109


>UniRef50_D2QBL1 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM
          74 RepID=D2QBL1_9SPHI
          Length = 98

 Score = 55.3 bits (133), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 2  QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK----VTHTSDATLHVN 57
          ++++       T  L E V ++  ++ ++   I      L+ E             L + 
Sbjct: 9  KIDLQTVGFNETTELVEQVESELRRIMRFRSDIVAADFYLREEGSNPTENKLVRWRLGIP 68

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQ 84
          G ++ A   G    A +    DKL RQ
Sbjct: 69 GNDLFAEGTGPSWAAGLRAAGDKLRRQ 95


>UniRef50_C3RQU3 Predicted protein n=1 Tax=Mollicutes bacterium D7
           RepID=C3RQU3_9MOLU
          Length = 163

 Score = 54.9 bits (132), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDAT--LHVNG 58
           M ++I    + +TEA+ E++  +F KL +Y   ++   V + V+           +    
Sbjct: 44  MDISIRCK-ITMTEAMNEYLMNRFKKLNRY-KVLDNSRVSILVKPHEAAVKIQTLISNKY 101

Query: 59  GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
           G    +    D Y A+D  IDK+  +L K K+
Sbjct: 102 GNFKVTTMASDYYTAVDLHIDKVKNKLCKIKE 133


>UniRef50_B2IF06 Cold-shock DNA-binding domain protein n=1 Tax=Beijerinckia indica
           subsp. indica ATCC 9039 RepID=B2IF06_BEII9
          Length = 187

 Score = 54.6 bits (131), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 1   MQLN--ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTS----DATL 54
           M++   I       TE  R  +  K A LE+++DRI    VV+K     H +    +  +
Sbjct: 1   MEVQAQIDFQGFHPTEQQRALIEQKIAGLEEFYDRITACRVVMKAPSHHHRTGGQYEVNI 60

Query: 55  HV---NGGEIHAS------AEGQDMYAAIDGLIDKLARQL----TKHKDKLKQH 95
           H+    G E+             D   AI+    +  R+L       + ++K H
Sbjct: 61  HLVLPEGREVVVERTPPEDERFSDPMFAINDAFSRARRRLQDEVRHIRGQVKVH 114


>UniRef50_A8V5D5 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp.
          128-5-R1-1 RepID=A8V5D5_9AQUI
          Length = 158

 Score = 54.2 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 32 DRINQVYVVLKVEKVTHT--SDATLHVN---GGEIHASAEGQDMYAAIDGLIDKLARQLT 86
          +    V V    EK  H    D  ++ N   GG IHA  E  D+Y AID ++D++ RQL 
Sbjct: 8  EDSVNVRVTYDFEKHRHRNRVDIDIYFNTPGGGVIHAWEESNDLYTAIDFVVDEVERQLV 67

Query: 87 KHKDKL 92
          + K + 
Sbjct: 68 RLKARR 73


>UniRef50_A5FK95 Putative uncharacterized protein n=2 Tax=Flavobacteriales
           RepID=A5FK95_FLAJ1
          Length = 104

 Score = 53.8 bits (129), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEK------VTHTSDA 52
           M++ I T  N+E  + L ++ + +  K L ++ D+I ++ V    E              
Sbjct: 1   MKIQINTDKNIEGHQRLEKYFSEELEKGLARFEDKITRIEVHFGDENGEKFSLNDKKCVL 60

Query: 53  TLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       I  +   + +  A +G + K+ + LT   +KLK H
Sbjct: 61  EVRTAKLQPITVTEHAETLEKAFNGALSKIKKSLTTTFEKLKAH 104


>UniRef50_C5CAR2 Ribosomal subunit interface protein n=1 Tax=Micrococcus luteus
          NCTC 2665 RepID=C5CAR2_MICLC
          Length = 225

 Score = 53.8 bits (129), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATL 54
          M ++    N+ ++E+ R+ V  +  +L++  +  + + V +               + T+
Sbjct: 3  MDVSYIARNISLSESFRDHVVERTERLQRLAEGADTLEVRVTKVSHRKHSDEAVRVELTV 62

Query: 55 HVNGGEIHASAEGQDMYAAIDGLIDKL 81
                + A A   D  AA D    +L
Sbjct: 63 RGPRDVVRAEAAADDELAAFDKAAARL 89


>UniRef50_Q1NMP5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=delta
          proteobacterium MLMS-1 RepID=Q1NMP5_9DELT
          Length = 118

 Score = 53.4 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVL----KVEKVTHTSDATLH 55
          M+L + G N++I ++ ++ + ++ A+L ++   +   + V +      +   +       
Sbjct: 1  MELQVEGRNLDIRQSWQDKIESEKARLLRHHAGLVHHLRVSIEETASHKSGGYEVRLVAA 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
          V G  +  + +G+ +   +    D L  QL + + K +
Sbjct: 61 VPGETVVVNRKGESVRTLLGEAFDNLGLQLKELQRKRR 98


>UniRef50_A6CVQ4 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CVQ4_9VIBR
          Length = 109

 Score = 53.0 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK--VTHTSDATLHVNG 58
           M ++    ++ ++E++R     K   L     +  +++V +   +    +  +  +H   
Sbjct: 1   MNIHFNTQSIVLSESMRSHCVTKADHLFAVHPQATEIFVSIIHHRSYGQYDVELKVHAEH 60

Query: 59  GEIHASAEGQDMY----AAIDGLIDKLARQLTKHKDKLKQH 95
                   G + Y     A   +  KL +Q TK K +L+ H
Sbjct: 61  QWCFVKHSGDEFYHVAAEAFSAMTHKLQKQKTKVKRELRDH 101


>UniRef50_UPI00016A5540 putative RNA polymerase, sigma 28 subunit, FliA/WhiG family protein
           n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A5540
          Length = 379

 Score = 52.6 bits (126), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 1   MQLNITGNNVE--ITEALREFVTAKFAK-----LEQYFDRINQVYVVLKVEKVT--HTSD 51
           M+  I+  N+       L+  +     +     L  +   + ++   L+       + + 
Sbjct: 1   MKTAISYRNISELARPDLKGLIGNLLDRHLQPHLSHFPAELVRLRATLERSGHRSLYRAR 60

Query: 52  ATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             L +    +  S E  ++  A++    +L RQL +H   L+
Sbjct: 61  LRLGLPSTTLTCSDESPELGKALERSFAELERQLERHIAHLR 102


>UniRef50_C5B5J5 Putative uncharacterized protein n=4 Tax=Alphaproteobacteria
           RepID=C5B5J5_METEA
          Length = 390

 Score = 52.6 bits (126), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 1   MQLNITGNNVE------ITEALREFVTAKFAKLEQYFDRINQVYVVLK--VEKVTHTSDA 52
           M +  +  N++        E + E V      L ++ + + ++ VV      K       
Sbjct: 1   MNVIRSFRNLDRHGQQRAPEVIEEEVRQLEPHLARFREDLVRLEVVASQTRGKTRIKVSL 60

Query: 53  TLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            L +  G I A  +G ++   +      L  Q+ +H  +LK
Sbjct: 61  RLQLPSGVIAAREDGFEIEPVLRKAFADLRHQVDRHVARLK 101


>UniRef50_B4CWD9 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus
          Ellin428 RepID=B4CWD9_9BACT
          Length = 116

 Score = 52.2 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 10 VEITEALREFVTAKFAKLEQYFDRINQVYVVLK------VEKVTHTSDATLHVNGGEIHA 63
          +  +EA+ E V  +  KL +YFDRI    VV++                 L V G E+  
Sbjct: 1  MAPSEAVTERVQKETEKLGKYFDRITSCSVVIEAPQKHHHHGEPFHVRIELGVPGKELVV 60

Query: 64 SAE 66
          + +
Sbjct: 61 TQK 63


>UniRef50_Q73N60 Ribosomal subunit interface protein, putative n=2 Tax=Treponema
          RepID=Q73N60_TREDE
          Length = 96

 Score = 52.2 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVN-GG 59
          M +NI      + E  ++++  KF ++E   + I  +   +K++K     D T++   GG
Sbjct: 1  MNINIQAVKFTMDEDQKKYLDQKFKRIEYADNLITDIQCFIKLDK-KFIYDTTINFRWGG 59

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            H S E  +  A ++ ++D   +++ K KDK+++
Sbjct: 60 TAHVSTENYEFEAGVNKMMDIADQKVKKEKDKVQE 94


>UniRef50_C5CTR1 Ribosomal subunit interface protein, putative n=1 Tax=Variovorax
           paradoxus S110 RepID=C5CTR1_VARPS
          Length = 119

 Score = 52.2 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTH--------TS 50
           MQ+ + T N +   +AL  +  A+   +L ++ D + +V V L  E              
Sbjct: 1   MQIQVNTSNGINNKDALERWADAEIKQQLGRFVDDVTRVEVHLSDENHDKAGGGDKCCVM 60

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
           +A L  +   +  +     +  A  G  DKL R L     +L  H
Sbjct: 61  EARL-AHHQPLAVTQHATTLDEAFRGAADKLKRLLDNTLGRLNNH 104


>UniRef50_A7HIK3 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HIK3_ANADF
          Length = 134

 Score = 51.9 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFAK-LEQ-YFDRINQVYVVL-----KVEKVTHTSDAT 53
           M+L+I  N++ +   +  F+     + L + Y D   ++ V       K   V      +
Sbjct: 1   MKLSIHANHLSLPNDVMRFIEKHVTRPLARVYDDSAAELAVHFDDSRRKKGGVDQACRLS 60

Query: 54  LHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
             + G   +H  +   D+Y A+    ++L R + K  DK++
Sbjct: 61  FRMPGARTVHVESVEDDLYKALLDASERLKRHVRKQVDKMR 101


>UniRef50_Q5P2J4 Putative uncharacterized protein n=4 Tax=Rhodocyclaceae
           RepID=Q5P2J4_AZOSE
          Length = 117

 Score = 51.9 bits (124), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++++  + +E    LR++V  +    + ++ D+I    + +                 L
Sbjct: 1   MRIDLQCSGLEAPSGLRDYVARRMRFAIGRFRDQIQWARIKVADVNGPRGGADKRCVVQL 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            +    ++  S  G D    +D   +++++ L +   +L+
Sbjct: 61  RLRNCPDVIFSVTGTDARPLVDLAAERVSQVLVRRLARLR 100


>UniRef50_D0SNV4 Ribosomal subunit interface protein n=4 Tax=Acinetobacter
           RepID=D0SNV4_ACIJU
          Length = 124

 Score = 51.1 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           M + I T  N++ +E L  +V A+   + ++Y +RI    V +  E              
Sbjct: 1   MNIEIRTDKNIQGSERLISYVRAELTQEFQRYSERITHFSVHISDENGEKTGDHDKRCMI 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
                G + +  + +  ++ A+I G IDKL R L    +K + H
Sbjct: 61  EARPAGMKPLAVTHKAANIDASIHGAIDKLKRSLEHLYEKKEHH 104


>UniRef50_Q1N2T1 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
           RepID=Q1N2T1_9GAMM
          Length = 136

 Score = 51.1 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M++ +    ++I+  L++++  +    L    D+I +V VVL                 L
Sbjct: 1   MKIIVNVRRLKISAELKKYIKRRLQFALGSRSDQIQRVEVVLSDLNGPKGGEDKHCRMLL 60

Query: 55  HVNGG-EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
            + G  ++       +M A +D   ++ +  +TK  D+L+
Sbjct: 61  KLEGHQDVVIEDVDSEMQAVVDKAANRASLTVTKRLDRLR 100


>UniRef50_Q48ML3 Ribosomal subunit interface protein, putative n=6
           Tax=Pseudomonadaceae RepID=Q48ML3_PSE14
          Length = 142

 Score = 51.1 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 1   MQLNITG-NNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLKVEK------VTHTSDA 52
           MQ+ +   N++E +  L E+V       LE Y + + +V V ++ E              
Sbjct: 1   MQIQVNSDNHIESSIRLEEWVRTTVESTLEHYDENLTRVEVHIRDENGDKPGPHDIKCQM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                G + I  S +   +  A+DG   KL   L     KL+ 
Sbjct: 61  EARPKGHQPISVSHKADTVDQAVDGAAVKLDHALEHLFGKLRG 103


>UniRef50_C6WEC1 Putative uncharacterized protein n=1 Tax=Actinosynnema mirum DSM
          43827 RepID=C6WEC1_ACTMD
          Length = 98

 Score = 50.7 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVLKVEKVTH-TSDATLHVNG 58
          MQL++      + EA RE+   K   L +Y         V L  +      +  TLHV+G
Sbjct: 10 MQLSLARR---VPEAAREYAGVKIGCLGKYAPGEVPFAMVRLSYDGPRRLVAHGTLHVDG 66

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
            ++A A  +     +D L D+L  QL K   
Sbjct: 67 HAVNADAGAETFIEVVDLLQDRLKAQLVKMHG 98


>UniRef50_C1ZHK6 Putative uncharacterized protein n=1 Tax=Planctomyces limnophilus
           DSM 3776 RepID=C1ZHK6_PLALI
          Length = 117

 Score = 50.7 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M  N+    + + + LREFV  K    L+++      V + L+                +
Sbjct: 1   MHTNLITRGLVLPQGLREFVDRKLEFALDRFQLSPADVEITLEDINGPRGGQDKRCRLRV 60

Query: 55  -HVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +     +     G D+   +   +D++ + L K   K    
Sbjct: 61  GNTKRTRVLIEETGSDLQRVLSRTVDRMEQALAKLHRKHHSR 102


>UniRef50_Q6APA9 Similar to cold-shock protein n=2 Tax=Desulfobulbaceae
          RepID=Q6APA9_DESPS
          Length = 176

 Score = 50.3 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDR-INQVYVVLK----VEKVTHTSDATLH 55
          M+L +   NV++ ++ +E +  +  KL +++   I  + V ++     ++  +       
Sbjct: 1  MELKVETRNVDLRKSWQEKIDTESEKLIRHYANFILHLRVAIEANTHHKEGGYEVRLVAS 60

Query: 56 VNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
          V    +  +  G+ + A +    D LA QL + + K ++
Sbjct: 61 VPQDTVVVTRSGEVVRAVLTEAFDVLALQLKEIQRKKRK 99


>UniRef50_B2UIV4 Ribosomal subunit interface protein n=2 Tax=Ralstonia pickettii
           RepID=B2UIV4_RALPJ
          Length = 105

 Score = 50.3 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSDATLHV 56
           ++I+   +  ++A+ E V     +L++    + +  V L      + +      +  +  
Sbjct: 5   VDISFQGIPHSKAVEEAVIKHADRLKRIRADLMRCRVSLAVGAKHQHQGKPFDVNVHVFT 64

Query: 57  NGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                I ++   +D Y A+      + R L +   K   
Sbjct: 65  PHQTHISSNTSNEDPYVALHEAFSHVERMLLEAGSKRSS 103


>UniRef50_B2S0F3 Ribosome-associated factor Y n=20 Tax=Borrelia RepID=B2S0F3_BORHD
          Length = 103

 Score = 49.9 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQ-VYVVLKVEKVTHTSDATLHVN-G 58
          M+  I   N  ++ + ++F+  K  KL  +  + ++ + + +K E      DA LH N G
Sbjct: 6  MEPKIQAINYHLSNSTKDFIIKKLEKLGTHIKQNSESLKITIKKENDIFDIDAHLHFNWG 65

Query: 59 GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
            IH   EG+++Y +I+ LI++L     K K+K
Sbjct: 66 KIIHIKEEGKELYHSIENLIERLQNTANKEKNK 98


>UniRef50_Q21YM4 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens
          T118 RepID=Q21YM4_RHOFD
          Length = 114

 Score = 48.0 bits (114), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 1  MQLNI-TGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKV------THTSDA 52
          MQ+ I T +++E  EAL  + T +    L ++   + +V V L  E              
Sbjct: 1  MQIQINTDHHIEGHEALAAWATGEVKSGLSRFSASVTRVEVHLSDENGHKSGPDDKRCVM 60

Query: 53 TLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQL 85
             V G   +  +     +Y  + G  +KL+R +
Sbjct: 61 EARVQGRQPLAVTHNAPSLYLTVTGATEKLSRLI 94


>UniRef50_B9TBM2 Putative uncharacterized protein n=1 Tax=Ricinus communis
          RepID=B9TBM2_RICCO
          Length = 58

 Score = 46.9 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 58 GGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
          G  ++  +  QD+YAAID LIDKL RQ+ K+K K++ H
Sbjct: 3  GKTVYVESLSQDLYAAIDTLIDKLDRQVMKYKAKVQGH 40


>UniRef50_B1ZS48 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1
          RepID=B1ZS48_OPITP
          Length = 120

 Score = 46.5 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 1  MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE---KVTHTSDATLHVN 57
          M+L++   +V  T++L  +V    + L      I++ +V L+ +      +     L V 
Sbjct: 1  MKLSLKHVHVRPTDSLDSWVEEGLSTLRPLLA-IDEAHVRLEHDAAASPAYRVTVHLVVP 59

Query: 58 GGEIHASAEGQDMYAAIDGLIDKL 81
          G ++ A A    +  A   ++ +L
Sbjct: 60 GPDLRADAVDHTLRTAFAKVLGEL 83


>UniRef50_Q4KI21 Ribosomal subunit interface protein, putative n=2 Tax=Pseudomonas
          fluorescens RepID=Q4KI21_PSEF5
          Length = 119

 Score = 46.1 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 16 LREFVTAKFA-KLEQYFDRINQVYVVLKVEKVTH------TSDATLHVNGGE-IHASAEG 67
          + E+V +     LE+Y + + +V V L+ E                   G + +  + + 
Sbjct: 1  MEEWVRSTVESTLERYEEDLTRVVVHLRDENGGKSGPDDMRCQLEARPKGHQPVSVTHKA 60

Query: 68 QDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +  A+DG   KL   L     KL+ 
Sbjct: 61 DTLEQALDGATVKLESALEHMFGKLRG 87


>UniRef50_Q11UA1 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11UA1_CYTH3
          Length = 104

 Score = 45.7 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVE------KVTHTSDA 52
           M +   T  NV   E    ++++     L+++ + I ++ V L  E              
Sbjct: 1   MTIQFNTDKNVASNERTANYLSSMISDSLDRFSEHITRIEVHLSDENSSKEGGDDKRCVL 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
              + G +    +     +  A+ G IDKL   L K+ ++ + +
Sbjct: 61  EARMEGKKPFAVTNNADTIEKAVSGAIDKLTTTLEKNLERQRSY 104


>UniRef50_D0CFJ2 Ribosomal subunit interface protein n=13 Tax=Acinetobacter
           RepID=D0CFJ2_ACIBA
          Length = 116

 Score = 44.5 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTH------TSDA 52
           M + I T  N+  +E L  +V A+   + +++ +RI    V    E              
Sbjct: 1   MNIEIRTDKNIHNSERLITYVRAELTQEFQRHSERITHFSVHFSDENGDKGGDKDIHCMI 60

Query: 53  TLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
               +G   +    +  ++ A+I G I+KL R L    +K
Sbjct: 61  EARPSGLKPVAVHHKAGNIDASIHGAIEKLKRSLEHTFEK 100


>UniRef50_Q12CA7 Ribosomal subunit interface protein, putative n=2 Tax=Polaromonas
           RepID=Q12CA7_POLSJ
          Length = 120

 Score = 44.2 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 1   MQLNITGNN-VEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVT------HTSDA 52
           MQ+ +  N+ +   EA   + + +    L ++   I +V V +  +              
Sbjct: 1   MQVQVNSNHTIHTGEAFERWASTELNDSLSRFKGDITRVEVHMSDDTGDGAGAGSRRCVM 60

Query: 53  TLHVNGGE-IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
              ++  E +  +        A  G  DKL R +     KL+ 
Sbjct: 61  EARLSHHEPLSVNHHAPSQDEAFRGASDKLKRLIEHTLGKLRD 103


>UniRef50_B1C667 Putative uncharacterized protein n=1 Tax=Anaerofustis
          stercorihominis DSM 17244 RepID=B1C667_9FIRM
          Length = 173

 Score = 43.8 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 27 LEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQL 85
          L++YF +  +  +++   +   T++ T+ V+   +      +D+  A D  I+KL  Q+
Sbjct: 28 LDKYFPKDPKANIMISEIRGLVTTEITVTVDSTFLRVEVSDRDVRNAADKAIEKLEAQI 86


>UniRef50_B4RFH3 Cold-shock DNA-binding domain protein n=1 Tax=Phenylobacterium
          zucineum HLK1 RepID=B4RFH3_PHEZH
          Length = 189

 Score = 43.4 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 1  MQL--NITGNN-VEITEALREFVTAKFAKLEQYFDRINQVYVVL------KVEKVTHTSD 51
          MQL   IT    +E +EAL+  +  +  KLE++ DRI    V +      +     +   
Sbjct: 1  MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVR 60

Query: 52 ATLHVNG 58
            +   G
Sbjct: 61 LQITAPG 67


>UniRef50_A9BQF4 Ribosomal subunit interface protein, putative n=9
           Tax=Comamonadaceae RepID=A9BQF4_DELAS
          Length = 126

 Score = 43.4 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 1   MQLNITGNN-VEITEALREFVTAKF-AKLEQYFDRINQVYVVLK-------VEKVTHTSD 51
           MQ+ +  ++ ++  E+L ++   +  AKL ++ D + +V V L                 
Sbjct: 1   MQVQVHADDSIQGGESLAQWAQEEINAKLARFKDYVVRVEVFLTGVDALKTSGAPGKRCV 60

Query: 52  ATLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                NG   I  +AE + +  A +  I+KL R +     KLK 
Sbjct: 61  LETRANGRPPIAVNAEAEKVKDAFNAAIEKLKRAVETDLGKLKD 104


>UniRef50_D0LQZ0 Putative uncharacterized protein n=1 Tax=Haliangium ochraceum DSM
           14365 RepID=D0LQZ0_HALO1
          Length = 128

 Score = 43.0 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 1   MQLNITGNNVEITEALREFVTAKFA-KLEQYFDRINQVYVVLK-----VEKVTHTSDATL 54
           M + I    +E+++ LRE V  +    ++++ DR+ +V V L         V      ++
Sbjct: 1   MHIQIRTQKLEVSDGLRELVRRRLRFAMDRFGDRVQRVTVRLADLNGPRGGVDKHCRISV 60

Query: 55  HVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLK 93
                G +      + + A +   I++  R L +   +LK
Sbjct: 61  VTRSQGVVVVEGTDESLPAVVTRAIERAVRALKRANARLK 100


>UniRef50_B8EK85 Cold-shock protein DNA-binding n=2 Tax=Beijerinckiaceae
           RepID=B8EK85_METSB
          Length = 209

 Score = 42.6 bits (100), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHT---------SDAT 53
           L I   +++ ++AL + +  +  +LE  F RI    VV                   +  
Sbjct: 5   LQIVFRDIQHSDALAKLIEDRARRLESAFSRITGCRVVAGAAHGATKNTIPPLSLCVEVE 64

Query: 54  LHVNGGEIHASAEGQ---DMYAAIDGLIDKLARQLTKH----KDKLKQH 95
           +      I A AE +   +  A ++ + D   R+L +     KD +++H
Sbjct: 65  VPGR-PMIVAKAEAKRKGEQAALVNRVFDVAERRLEQLSELAKDNVRRH 112


>UniRef50_B2UIT9 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii
          RepID=B2UIT9_RALPJ
          Length = 113

 Score = 42.2 bits (99), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 3  LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTH------TSDATLHV 56
          L+I+  +   ++A+ + V  +   L ++   I +  V L                  +  
Sbjct: 5  LDISFRDFPYSKAIEDAVIEQANSLARFQAEIARCRVKLIQLPRQQTPIQSVRVHIDVMT 64

Query: 57 NGGE-IHASAEGQDMYAAIDGLIDKLARQLTK 87
               +   A G+D  AA+     ++   L +
Sbjct: 65 RHDSHLSGHASGEDARAALREAFREVEFALRR 96


>UniRef50_Q0C2I5 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium
          ATCC 15444 RepID=Q0C2I5_HYPNA
          Length = 107

 Score = 41.5 bits (97), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 1  MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKVTHT-----SDAT 53
          M     TGN V+    + E    +F  +LE++  R++++ V ++    T        +A 
Sbjct: 1  MDFQFNTGNKVDGDARMDEHFETRFRERLERFEPRLSRIEVHVRDTDGTRRDGPDGIEAV 60

Query: 54 L---HVNGGEIHASAEGQDMYAAIDGLIDKLARQL 85
          +     NG  + AS +     AA++  + KL  +L
Sbjct: 61 IEARPYNGEPLTASDKAGTPEAAVNAALQKLVTRL 95


>UniRef50_UPI00016C6947 putative sigma 54 modulation protein n=1 Tax=Clostridium
          difficile QCD-76w55 RepID=UPI00016C6947
          Length = 173

 Score = 41.1 bits (96), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 1  MQLNITGNNV-EITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG 59
          M + I   +  EI++ +   +  K   LE +    + + + ++  K+++  +  L  N  
Sbjct: 1  MDIKIIKKHNKEISKDIELAIHQKLNFLEVFLKENDYIKITVEQNKLSYKIELLLEYNKK 60

Query: 60 EIHASAEGQDMYAAIDGLIDKLARQLTKH 88
           I  +    D +++++ + ++L R+L K 
Sbjct: 61 IIKMNEVSGDFFSSLEKITNRLKRKLYKI 89


>UniRef50_C4RPJ2 Putative uncharacterized protein n=2 Tax=Micromonospora
           RepID=C4RPJ2_9ACTO
          Length = 146

 Score = 41.1 bits (96), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 17  REFVTAKFA----KLEQYFDRINQVYVVLK-VEKVTHTSDATLHVNG-GEIHASAEGQDM 70
           R ++  +FA    +L  +     ++ V +K  E           + G  +I  ++  +D+
Sbjct: 25  RNWIAEQFATLDARLAGFHADATELEVSVKDREARGQKVTLECWIAGRQKIVTTSAEEDL 84

Query: 71  YAAIDGLIDKLARQLTKHKDKLKQH 95
           +AA++ + D L R+L   K + +  
Sbjct: 85  HAALNDVRDDLRRRLNDAKTRQEPR 109


>UniRef50_B1ZSU6 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1
           RepID=B1ZSU6_OPITP
          Length = 119

 Score = 41.1 bits (96), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK-----VTHTSDATLHV 56
           ++ +   N E+ E +R     K   L +    I ++ + L+ +        + +   +  
Sbjct: 12  RVLVRAINFELDEPVRRATADKAVLLVRRHPLIEEICIELENDPTREAPHEYVAKGRIDF 71

Query: 57  NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDK 91
            G  + +S  G D    ++ L+++L  QL K + +
Sbjct: 72  GGPALLSSVTGGDATGTLNYLLEQLEHQLRKQRLR 106


>UniRef50_D2R4D6 Putative uncharacterized protein n=1 Tax=Pirellula staleyi DSM 6068
           RepID=D2R4D6_9PLAN
          Length = 117

 Score = 40.7 bits (95), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 1   MQLNITGNNVEITEALREFVTAK-FAKLEQYFDRINQVYVVLKVEKV-----THTSDATL 54
           M++ I+     I++ L +F   +    L ++  RI QV V+L  E         T    +
Sbjct: 1   MRIVISNRRAAISKELYDFAERRVLFALSRFAPRIEQVLVLLTDENGPRGGIDQTCQLVI 60

Query: 55  HV-NGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
            +  G +         +  A+    D  +R + +   K + 
Sbjct: 61  QLDRGEQFTIRQCEATVEEAVSRAADAASRMVGRSMAKRRD 101


>UniRef50_A4WZ74 Putative uncharacterized protein n=2 Tax=Bacteria
           RepID=A4WZ74_RHOS5
          Length = 116

 Score = 40.3 bits (94), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEK------VTHTSDA 52
           M++ I T +N++  ++L     A+ A+ L ++ D+I  V V L  E              
Sbjct: 1   MRIQINTDDNIDGVDSLTSRFEAEIAEGLSRFSDQITAVEVHLSDENAGKGGSDDKRCLL 60

Query: 53  TLHVNG-GEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94
                G   +    +      A+ G + K+ R+L     +   
Sbjct: 61  EARPTGAAPVAVRHQAATSDEALKGAVQKMQRKLQSELGRRNN 103


>UniRef50_A8M1R1 Putative uncharacterized protein n=2 Tax=Salinispora
           RepID=A8M1R1_SALAI
          Length = 129

 Score = 40.3 bits (94), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 17  REFVTAKF----AKLEQYFDRINQVYVVLK-VEKVTHTSDATLHVNG-GEIHASAEGQDM 70
           R ++  +F    A+L  +     ++ V +K  E           + G  +I  ++  +D+
Sbjct: 25  RAWIADQFGTLDARLAGFHADATELEVSVKNRETRGQKVTLECWIAGRQKIVTTSAEEDL 84

Query: 71  YAAIDGLIDKLARQLTKHKDKLKQH 95
           +AA++ + D L R+L   K + +  
Sbjct: 85  HAALNDVRDDLRRRLNDAKTRQEPR 109


>UniRef50_B2UJI3 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii
           RepID=B2UJI3_RALPJ
          Length = 142

 Score = 39.9 bits (93), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 3   LNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEK------VTHTSDATLHV 56
           + I  +N+  ++A++  +T   ++L+ +   I +  + L  +               + +
Sbjct: 17  VEILFSNLPQSDAIKAAITRFASRLDGFPCDIRRFRICLASDNPERSARGPFLVHIEVDI 76

Query: 57  NGGEIHASAEGQ-DMYAAIDGLIDKLARQLT 86
            G  + A      D++ A+     ++  ++ 
Sbjct: 77  PGRALTADEASDVDVHVALLNAFREMRARVR 107


>UniRef50_A8M8Q2 CBS domain containing protein n=1 Tax=Caldivirga maquilingensis
           IC-167 RepID=A8M8Q2_CALMQ
          Length = 386

 Score = 39.5 bits (92), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 9   NVEITEALREFVTAKFAKLEQYFDRIN-QVYVVLKVEKVTHTSDATLHVNGGEIHASAEG 67
           N +    + + +     K+ +  + ++ +V +  +     +     L  +     A+AE 
Sbjct: 291 NNDAKPLIEKVINNHLEKISKLVNVVDFKVDIRARDSGKRYEVTVRLKDDKELHTATAED 350

Query: 68  QDMYAAIDGLIDKLARQLTKHKDKLKQ 94
           +D  +AI   +DK+ + + K+  K + 
Sbjct: 351 RDPVSAIREAMDKIMQSIIKNVSKARD 377


>UniRef50_Q9Z7W7 Ribosomal protein S30AE n=5 Tax=Chlamydophila RepID=Q9Z7W7_CHLPN
          Length = 228

 Score = 39.5 bits (92), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2   QLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGG-- 59
            + IT     ++  L++ +  K   L      +  + VVL   K    ++  +  + G  
Sbjct: 22  HVEITTKAFRLSMPLKQLILEKSDHL----PPMETIRVVLTSHKDKLGTEVHVVASHGKE 77

Query: 60  EIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH 95
            +       + Y A+     K+     KH +K K  
Sbjct: 78  ILQTKVHNANPYTAVINAFKKIRTMANKHSNKRKDR 113


>UniRef50_A8FWF6 Putative uncharacterized protein n=4 Tax=Bacteria
           RepID=A8FWF6_SHESH
          Length = 105

 Score = 39.2 bits (91), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 1   MQLNI-TGNNVEITEALREFVTAKF-AKLEQYFDRINQVYVVLKVEKV-------THTSD 51
           MQ+ + T  N+   EAL + V     + L  + D I ++ V L  E              
Sbjct: 1   MQIQVNTDKNISGREALAQSVEDVLRSDLSSFSDHITRIEVHLSDEDSSAKSGMTDKRCL 60

Query: 52  ATLHVNG-GEIHASAEGQDMYAAIDGL----IDKLARQLTKH 88
             + + G   I  S + + +  A+       ++ L  +L KH
Sbjct: 61  LEVRLAGEHPIAISEQAETIEEAVADASQQMVNMLETELVKH 102


>UniRef50_D2RTT7 CBS domain containing membrane protein n=12 Tax=Halobacteriaceae
           RepID=D2RTT7_9EURY
          Length = 385

 Score = 38.8 bits (90), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 1   MQLNITGNNVEITEAL-REFVTAKFAKL-EQYFD-RINQVYVVLKVEKVTH-------TS 50
           M + IT  N+ + + + RE +      + ++Y D ++   +V    E             
Sbjct: 271 MDVQIT--NISMLDTITREGIVENIEDVVDKYQDMQVQHAHVRF-KEHQEKLRGTPLVHC 327

Query: 51  DATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
              L  N G+I  + EG     A    IDKL R + + K 
Sbjct: 328 QIRLRTNKGQIAGTGEGYGSENAFRVAIDKLERNVLEVKG 367


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.317    0.191    0.547 

Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 955,186,424
Number of Sequences: 3077464
Number of extensions: 54199207
Number of successful extensions: 195721
Number of sequences better than 1.0e-01: 369
Number of HSP's better than  0.1 without gapping: 876
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 193798
Number of HSP's gapped (non-prelim): 1159
length of query: 95
length of database: 1,040,396,356
effective HSP length: 64
effective length of query: 31
effective length of database: 843,438,660
effective search space: 26146598460
effective search space used: 26146598460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 88 (38.0 bits)
