Phyre 2 alignment of P04079 with c3lqkA_

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Job Description | P04079
Confidence | 23.62% | Date | Thu Jan 5 10:58:10 GMT 2012
Rank | 433 | Aligned Residues | 39
% Identity | 18% | Template | c3lqkA_
PDB info | PDB header:oxidoreductase | Chain: A: PDB Molecule:dipicolinate synthase subunit b; | PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c
Resolution | 2.10 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 226 | . | . | . | 230 | . | . | . | . | . | . | . | . |  |  |  |  | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | D | D | K | V | I | L | G | L | S | G | G | V | . | . | . | . | D | S | S | V | T | A | M | L | L | H | R | A | I | G | K | N | L | T | C | V | F | V | D | N | G | L | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | G | K | H | V | G | F | G | L | T | G | S | H | C | T | Y | H | E | V | L | P | Q | X | E | R | L | V | E | L | . | G | A | K | V | T | P | F | V | T | H | T | V | Q | T
Template Known Secondary structure |  | T | T |  |  |  |  |  |  |  |  | S |  | G | G | G | G | G | G | T |  |  |  |  |  |  |  |  |  | T | . | T |  |  |  |  |  |  |  | S | S |  | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . |  | . | . | . | . | . | . | . | 40 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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