Phyre 2 alignment of P04079 with c1s1hB_

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Job Description | P04079
Confidence | 30.34% | Date | Thu Jan 5 10:58:10 GMT 2012
Rank | 340 | Aligned Residues | 75
% Identity | 11% | Template | c1s1hB_
PDB info | PDB header:ribosome | Chain: B: PDB Molecule:40s ribosomal protein s0-a; | PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
Resolution | 11.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . |  |  |  |  | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | H | K | H | R | I | L | I | L | D | F | G | S | Q | Y | T | Q | L | V | A | R | R | V | R | E | L | G | V | Y | C | E | L | W | A | W | D | V | T | . | . | . | . | E | A | Q | I | R | D | F | N | P | S | G | I | I | L | S | G | G | P | E | S | T | T | E | E | N | S | P | R | A | P | Q | Y | V | F | E | A | G | V | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | P | E | D | V | V | A | I | S | S | R | T | F | G | Q | R | A | V | L | K | F | A | A | H | T | G | A | T | P | I | A | G | R | F | T | P | G | S | F | T | N | Y | I | T | R | S | F | K | E | P | R | L | V | I | V | T | D | . | . | . | . | . | . | P | R | S | D | A | Q | A | I | K | E | A | S | Y | V | N | I | P
Template Known Secondary structure |  | T | T |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S |  |  |  |  |  | S |  |  |  | T | T | T | T | T | T | T | T | T | S |  | S |  |  |  | S |  |  |  |  | S |  | . | . | . | . | . | . | T | T | T | T |  |  |  |  |  |  |  |  |  |  | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |  |  |  |  |  |  | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | .
|  | 82 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |
Query Sequence |  | V | F | G | V | C
Query Conservation |  |  |  |  |  |
Alig confidence |  |  |  |  |  |
Template Conservation |  |  |  |  |  |
Template Sequence |  | V | I | A | L | T
Template Known Secondary structure |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |
|  | 142 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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