BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (296 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 422 e-117 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 420 e-116 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 373 e-102 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 299 7e-80 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 292 8e-78 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 286 4e-76 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 286 8e-76 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 283 4e-75 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 282 9e-75 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 250 3e-65 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 228 3e-58 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 216 1e-54 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 215 1e-54 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 215 1e-54 UniRef50_C8NCI4 Ribose ABC superfamily ATP binding cassette tran... 201 2e-50 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 198 2e-49 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 192 9e-48 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 185 2e-45 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 181 2e-44 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 172 2e-41 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 167 3e-40 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 167 3e-40 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 167 3e-40 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 167 6e-40 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 166 7e-40 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 162 1e-38 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 157 4e-37 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 157 5e-37 UniRef50_Q67RD5 Ribose ABC transporter ATP-binding protein n=7 T... 157 5e-37 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 157 6e-37 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 154 5e-36 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 152 1e-35 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 151 3e-35 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 150 5e-35 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 150 6e-35 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 150 7e-35 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 149 2e-34 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 147 3e-34 UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesor... 147 5e-34 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 147 5e-34 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 146 8e-34 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 145 1e-33 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 145 1e-33 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 145 2e-33 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 143 6e-33 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 143 7e-33 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 143 8e-33 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 143 8e-33 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 141 2e-32 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 141 3e-32 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 140 4e-32 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 140 6e-32 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 139 1e-31 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 137 3e-31 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 137 4e-31 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 137 6e-31 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 136 7e-31 UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional... 136 7e-31 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 136 8e-31 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 135 2e-30 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 134 3e-30 UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri... 134 4e-30 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 134 5e-30 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 133 7e-30 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 132 1e-29 UniRef50_Q3DJE8 Ribose ABC transporter, periplasmic D-ribose-bin... 132 2e-29 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 132 2e-29 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 132 2e-29 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 132 2e-29 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 132 2e-29 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 130 4e-29 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 130 6e-29 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 130 7e-29 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 130 8e-29 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 129 8e-29 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 129 1e-28 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 129 1e-28 UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerot... 128 2e-28 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 128 3e-28 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 128 3e-28 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 126 8e-28 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 126 8e-28 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 126 1e-27 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 126 1e-27 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 126 1e-27 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 125 2e-27 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 125 2e-27 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 125 2e-27 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 124 3e-27 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 124 3e-27 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 124 6e-27 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 123 7e-27 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 123 8e-27 UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 123 9e-27 UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional... 122 1e-26 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 122 1e-26 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 122 1e-26 UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional... 122 1e-26 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 122 2e-26 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 122 2e-26 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 122 2e-26 UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional... 122 2e-26 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 122 2e-26 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 121 2e-26 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 121 2e-26 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 121 3e-26 UniRef50_Q4A8D1 Periplasmic sugar-binding protein n=3 Tax=Mycopl... 121 4e-26 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 120 4e-26 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 119 1e-25 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 119 2e-25 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 118 2e-25 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 118 3e-25 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 117 4e-25 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 117 4e-25 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 117 4e-25 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 117 5e-25 UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia... 117 6e-25 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 117 7e-25 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 116 9e-25 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 116 1e-24 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 115 1e-24 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 115 1e-24 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 115 2e-24 UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotro... 115 2e-24 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 115 2e-24 UniRef50_A8L4W4 Periplasmic binding protein/LacI transcriptional... 115 2e-24 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 115 2e-24 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 115 2e-24 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 115 3e-24 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 114 3e-24 UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostri... 114 3e-24 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 114 4e-24 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 114 4e-24 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 114 5e-24 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 113 7e-24 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 113 8e-24 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 113 1e-23 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 112 1e-23 UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic com... 112 1e-23 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 112 1e-23 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 112 2e-23 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 112 2e-23 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 112 2e-23 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 111 2e-23 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 111 3e-23 UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostri... 111 3e-23 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 111 4e-23 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 111 4e-23 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 110 4e-23 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 110 5e-23 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 110 6e-23 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 109 1e-22 UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroi... 109 1e-22 UniRef50_A7B2I9 Putative uncharacterized protein n=5 Tax=Clostri... 109 1e-22 UniRef50_A1TUU8 Periplasmic binding protein/LacI transcriptional... 109 1e-22 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 108 2e-22 UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Ta... 108 3e-22 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 108 3e-22 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 108 3e-22 UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostri... 108 3e-22 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 108 3e-22 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 107 3e-22 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 107 4e-22 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 107 5e-22 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 106 8e-22 UniRef50_C4L3Z3 Periplasmic binding protein/LacI transcriptional... 106 8e-22 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 106 9e-22 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 106 1e-21 UniRef50_A4FMX8 Ribose ABC transporter binding protein n=2 Tax=P... 106 1e-21 UniRef50_D2PTU2 Periplasmic binding protein/LacI transcriptional... 105 2e-21 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 105 2e-21 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 105 2e-21 UniRef50_B9KPX1 Periplasmic binding protein/LacI transcriptional... 105 2e-21 UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc... 105 2e-21 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 105 3e-21 UniRef50_C2AKV1 Monosaccharide ABC transporter substrate-binding... 104 3e-21 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 104 3e-21 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 104 3e-21 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 103 5e-21 UniRef50_UPI0001B55A58 periplasmic binding protein/LacI transcri... 103 6e-21 UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional... 103 7e-21 UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional... 103 7e-21 UniRef50_C1B1U9 Putative ABC transporter substrate-binding prote... 103 8e-21 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 103 8e-21 UniRef50_D1XHS5 D-ribose transporter subunit RbsB n=1 Tax=Strept... 103 8e-21 UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional... 103 1e-20 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 103 1e-20 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 103 1e-20 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 103 1e-20 UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional... 102 2e-20 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 101 2e-20 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 101 3e-20 UniRef50_A5ZT86 Putative uncharacterized protein n=1 Tax=Ruminoc... 101 3e-20 UniRef50_C5ENT7 Predicted protein n=3 Tax=Clostridiales RepID=C5... 101 3e-20 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 101 3e-20 UniRef50_C2BT70 Ribose ABC superfamily ATP binding cassette tran... 101 3e-20 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 100 4e-20 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 100 5e-20 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 100 5e-20 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 100 5e-20 UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacteriu... 100 6e-20 UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding... 100 6e-20 UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coproco... 100 7e-20 UniRef50_Q7NV24 Probable ribose ABC transporter, substrate bindi... 100 8e-20 UniRef50_Q0SII4 ABC ribose transporter, substrate-binding compon... 100 9e-20 UniRef50_C0BVF8 Putative uncharacterized protein n=1 Tax=Bifidob... 100 9e-20 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 100 1e-19 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 100 1e-19 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 100 1e-19 UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ... 99 1e-19 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 99 2e-19 UniRef50_Q9K6K2 Ribose operon repressor n=82 Tax=Bacillaceae Rep... 99 2e-19 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 99 2e-19 UniRef50_Q21X74 Periplasmic binding protein/LacI transcriptional... 99 2e-19 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 99 2e-19 UniRef50_Q2RXU3 Periplasmic binding protein/LacI transcriptional... 99 2e-19 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 99 2e-19 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 98 3e-19 UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding prot... 98 3e-19 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 98 3e-19 UniRef50_C0C5R0 Putative uncharacterized protein n=1 Tax=Clostri... 98 3e-19 UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional... 98 3e-19 UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostri... 98 3e-19 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 98 3e-19 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 98 4e-19 UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional... 98 4e-19 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 98 4e-19 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 97 4e-19 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 97 6e-19 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 97 6e-19 UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteob... 97 8e-19 UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostri... 97 8e-19 UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon... 97 9e-19 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 97 1e-18 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 96 1e-18 UniRef50_B5J7Y9 Putative uncharacterized protein n=1 Tax=Octadec... 96 1e-18 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 96 1e-18 UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr... 96 1e-18 UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional... 96 1e-18 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 96 1e-18 UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional... 96 2e-18 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 96 2e-18 UniRef50_Q7P137 Probable ribose ABC transporter, substrate bindi... 96 2e-18 UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus... 96 2e-18 UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1... 96 2e-18 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 96 2e-18 UniRef50_A8VYJ0 Transcriptional regulators-like protein n=2 Tax=... 95 2e-18 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 95 2e-18 UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribos... 95 3e-18 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 95 3e-18 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/293 (70%), Positives = 253/293 (86%), Gaps = 1/293 (0%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKKLATL+SA L++TVS A A+DT+A+VVSTLNNPFFV++KDGA+ A +LGYNL+VL Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVL 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 DSQN+P+KEL+NV+DLT+RG K +LINPTDSDAV NA+++AN++ IPV+TLDR A++G+V Sbjct: 61 DSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGDV 120 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL 182 VSHIASDNV+GG++AG++I +K GE AKVI+L+GIAGTSAARERGEGF AV +L Sbjct: 121 VSHIASDNVVGGEMAGNFIVEKVGEKAKVIQLEGIAGTSAARERGEGFMNAVKGSHMELL 180 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 ASQPADFDR KGLNVM+NLL A+PDVQAVFAQNDEMALGALRA+Q +GK +VM+VGFDGT Sbjct: 181 ASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK-EVMIVGFDGT 239 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DG AVN GKLAATIAQ PD IGA G+ETADKVLKGE+V+ PV LK+V K Sbjct: 240 DDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLKVVTK 292 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/295 (70%), Positives = 251/295 (85%), Gaps = 1/295 (0%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M MKKL TL+SA LS +VS A A+DT+A+V+STLNNPFFV++KDGA+ +A +LGYNL+ Sbjct: 1 MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 VLDSQN+P+KEL+NV+DLTVRG K +LINPTDSDAV NA+++AN++ IPV+TLDR A++G Sbjct: 61 VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 EVVSHIASDNV+GG++AG +I K G AKVI+L+GIAGTSAARERGEGF AV K Sbjct: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQ 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD 240 +LASQPADFDR KGLNVM+NLL A+PDVQAVFAQNDEMALGALRA+Q +GKS VM+VGFD Sbjct: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS-VMIVGFD 239 Query: 241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GT DG AV G+LAAT+AQ PD IGA G+ETADK+LKGEKV+A PV LK++ K Sbjct: 240 GTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/291 (61%), Positives = 241/291 (82%), Gaps = 1/291 (0%) Query: 5 KLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64 K++ L+SA LS + S +A A+D IA+V+ST+NNPFFV++KDGA+ +A +LGY L+ LDS Sbjct: 8 KVSVLLSAALLSVSTSFSASAQDAIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIALDS 67 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS 124 QN+P+KELANV+DLT+RG K +LINPTD+ AV NA++ AN+ANIPV+TLDR A G++VS Sbjct: 68 QNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHGDIVS 127 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS 184 HIASDN+ GG++AG++IA++ G+ AKVI+L+GIAGTSAARERGEGF AV A+ F +L+S Sbjct: 128 HIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIAGTSAARERGEGFSNAVTANNFELLSS 187 Query: 185 QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPD 244 QPADFDR KGLNVM+N+L A+ DVQAVFAQNDEMALGALRA++ AGK D++V+GFDGT + Sbjct: 188 QPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGK-DILVIGFDGTDE 246 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G AV +L+AT+AQ P+ +GA + TAD++LKG+ V+ PV LK++ + Sbjct: 247 GIAAVRRQQLSATVAQQPELLGATAIMTADRILKGQVVEKSIPVALKIITQ 297 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 299 bits (766), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 153/291 (52%), Positives = 212/291 (72%), Gaps = 5/291 (1%) Query: 9 LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP 68 L+ + +++ + K I +V+STLNNPFFV++KDGA+KEA+KLGY+LVVLDSQN+P Sbjct: 12 LMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVLDSQNDP 71 Query: 69 AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIAS 128 AKE ANV+DL G LLINPTDSDAV V++AN++NIPVITLDRQA G++ SHIAS Sbjct: 72 AKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANGGKITSHIAS 131 Query: 129 DNVLGGKIAGDYIAKKAGEGA---KVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLAS 184 DN+ GG++A +Y+ K + V+E+QGI G SA R+RGEGF + + KFN ++ Sbjct: 132 DNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFHNIMDKNDKFNFISI 191 Query: 185 QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPD 244 Q ADFDR KGL VM+N++ A+P++Q VFA NDEMALGA++A++ +G + +V+GFDG D Sbjct: 192 QAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKASG-INALVIGFDGNDD 250 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + +++ ++ A IAQ PD IGA GVE A+K+ KGE ++ K DLK+ K Sbjct: 251 AKDSIDANEMTAIIAQQPDLIGALGVELANKIYKGESIKNKIAADLKVYTK 301 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 292 bits (748), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 146/270 (54%), Positives = 200/270 (74%), Gaps = 4/270 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I +VVSTLNNPFFVSLK+GA+K++ +LGY L+VLDSQN+PAKE +N++DL G +L++ Sbjct: 36 IGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQNDPAKERSNIEDLIQGGISVLIV 95 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK--KAG 146 NPTDSDAV N+V++AN+ANIPVIT+DRQA GEVVSHIASDN+ GG++A +I K Sbjct: 96 NPTDSDAVINSVQVANKANIPVITVDRQANGGEVVSHIASDNIKGGELASSFIIDELKNK 155 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAH 205 + KV+ELQGI G SA RERG+GF + +++SQ A+FDR +GL+VM+N++ A Sbjct: 156 KDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKLISSQAANFDRAQGLSVMENIIQAQ 215 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 D AVFA NDEMALGA +AL+TA K ++VVGFDG D + A+ +++AT+AQ P + Sbjct: 216 SDFDAVFAHNDEMALGAAKALKTANKK-IIVVGFDGDEDAKTAIEKSEISATVAQQPALM 274 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G+ +ETA K+ G+ + PV L+L+ K Sbjct: 275 GSTSIETAVKISNGQNISKNIPVKLRLITK 304 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 286 bits (733), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 144/265 (54%), Positives = 189/265 (71%), Gaps = 2/265 (0%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TI L VSTLNNPFFVSLK G +KEA K G ++++D+QN+ +K+ ++V+DL +G LL Sbjct: 39 TIGLSVSTLNNPFFVSLKKGIEKEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALL 98 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 INPTDS A+ AV+ AN +PV+T+DR A +G+V + +ASDNV GG++A +IA K G+ Sbjct: 99 INPTDSSAISTAVESANAVGVPVVTIDRSAEQGKVETLVASDNVKGGEMAAAFIADKLGK 158 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 GAKV EL+G+ G SA RERG GF +A K V+ Q ADFDR KGL VM+NLL HPD Sbjct: 159 GAKVAELEGVPGASATRERGSGFHN-IADQKLQVVTKQSADFDRTKGLTVMENLLQGHPD 217 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGA 267 +QAVFA NDEMALGAL A+ ++GK D++V+GFDG D ++ D KL+AT+AQ P+ IG Sbjct: 218 IQAVFAHNDEMALGALEAINSSGK-DILVIGFDGNKDALASIKDRKLSATVAQQPELIGK 276 Query: 268 KGVETADKVLKGEKVQAKYPVDLKL 292 E AD +L G+KVQ LKL Sbjct: 277 LATEAADDILHGKKVQKTISAPLKL 301 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 286 bits (731), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 146/269 (54%), Positives = 191/269 (71%), Gaps = 1/269 (0%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K I L VST +NPFFV+LK GA++EA K G L+ +D+Q++PAK++A+++DL + K+ Sbjct: 39 KPAIGLAVSTQSNPFFVTLKKGAEEEAQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKV 98 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +L+NPTDSDAV AVK AN A IPV+TLDR GEV SH+ASDNV GGK+A +Y+ +K Sbjct: 99 ILVNPTDSDAVVGAVKAANAAGIPVVTLDRSVNGGEVASHVASDNVAGGKMAAEYLLEKI 158 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTA 204 G V+EL+GI G SAARERG+GF + A V+ QPADFDR KGL+VM+N+L A Sbjct: 159 GNQGDVVELEGIPGASAARERGQGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQA 218 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 + +V+ VFA NDEMALGA++AL+ AG DV VVGFD T D AV GK++AT+AQ P Sbjct: 219 NKNVKGVFAHNDEMALGAVQALEAAGMKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKL 278 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLV 293 IG V+ A K++ G+ V PV L LV Sbjct: 279 IGKTAVDAAKKIIDGQPVDKSLPVPLDLV 307 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 283 bits (725), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 141/267 (52%), Positives = 196/267 (73%), Gaps = 2/267 (0%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + +STLNNPFFVS+++G ++ A K V+ D+QN+ + + V+DL +G +++I Sbjct: 52 IGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVEDLITQGVDLIVI 111 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NP DS A+ +V+ AN+ANIPVI +DR + +GE+VS IAS+NV GGK+AG+YI +K GE Sbjct: 112 NPVDSTAIATSVEKANEANIPVICVDRGSDQGELVSFIASNNVEGGKLAGEYILEKVGEN 171 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDV 208 A+VI+L+GI G S+ RERGEGF++A K N+LASQ A+FDR +G+ VM+NLL AHPDV Sbjct: 172 AEVIQLEGIPGASSTRERGEGFEEATNG-KINLLASQTANFDRAEGMTVMENLLQAHPDV 230 Query: 209 QAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAK 268 +AVF QNDEMALGA A++ +GK DV +VGFDG D KAV +G L+AT+AQ P ++G Sbjct: 231 KAVFCQNDEMALGASEAIKASGK-DVTIVGFDGNEDAIKAVEEGNLSATVAQKPKEMGKL 289 Query: 269 GVETADKVLKGEKVQAKYPVDLKLVVK 295 +ETA K LKGE+V+ L+L+ K Sbjct: 290 AIETAIKYLKGEEVEETVDSPLELIKK 316 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 282 bits (722), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 155/306 (50%), Positives = 207/306 (67%), Gaps = 14/306 (4%) Query: 3 MKKLATLVSAVAL----SATVSANAMAKDT--------IALVVSTLNNPFFVSLKDGAQK 50 MKK T+ +A+AL + ++ AK I L VSTL NPFFVSLK+G K Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 EA K G ++V+D+Q++ AK+ +V+DL +G LLINP DS A+ AV+ AN IPV Sbjct: 61 EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 111 ITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGF 170 +TLDR A G+V + +ASDNV GG++A D+I ++ G+GAKV EL+G+ G SA RERG GF Sbjct: 121 VTLDRSAENGKVETLVASDNVKGGQMAADFIVEQLGKGAKVAELEGVPGASATRERGSGF 180 Query: 171 QQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 + A K NV+A Q ADFDR KGLNVM+NLL +PD+QAVFA NDEMALGA+ A++++G Sbjct: 181 HK-TADDKLNVIAKQTADFDRTKGLNVMENLLQGNPDIQAVFAHNDEMALGAIEAIRSSG 239 Query: 231 KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 K +++VVGFDG D KAV G ++ATIAQ P+ IG V+ A +L G+KV+ P L Sbjct: 240 K-EILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDILNGKKVEKTIPAPL 298 Query: 291 KLVVKQ 296 KL K+ Sbjct: 299 KLETKK 304 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 133/268 (49%), Positives = 181/268 (67%), Gaps = 1/268 (0%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 + VSTLNNPFFV++ +G Q+EA KLG + +L+ N+PA +L V+DL + +++ Sbjct: 47 LGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDLIQQHVNAIIL 106 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NPTDS ++ AV+ AN+A+IPVITLDR TKG V IAS++V GK+A D + K G Sbjct: 107 NPTDSQSLSTAVEQANRAHIPVITLDRSVTKGNVACFIASNSVEAGKMAADELIKALGGK 166 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 +V+ELQG+ GTSA +R +GF + + A V+A Q A+FDR + LNVMQN+L AHP+ Sbjct: 167 GQVVELQGVIGTSAEADREKGFDEEIGKAPGIRVVARQTANFDRSQALNVMQNILQAHPN 226 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGA 267 +Q VFAQNDEMALGAL+A+Q AGK ++ +VG DG + V+ G L A IAQ P Q G Sbjct: 227 IQGVFAQNDEMALGALKAIQEAGKHNIKIVGIDGEKEAVNDVHKGLLYADIAQQPVQEGI 286 Query: 268 KGVETADKVLKGEKVQAKYPVDLKLVVK 295 GVE A K+++GEKV + L LV K Sbjct: 287 LGVEYAVKLVEGEKVPKQVNSPLHLVEK 314 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 122/268 (45%), Positives = 181/268 (67%), Gaps = 2/268 (0%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 + + +STL+NPFFVS+++G Q A K N+ V D+QN+ AK+ +N++DL + +L+I Sbjct: 50 VGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKKVDVLII 109 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NP DS A+ AVK AN A IPVIT+DR + G+V++ +AS++ GG++A Y+ +K G+ Sbjct: 110 NPVDSSAITPAVKDANDAGIPVITVDRSSDGGKVLTLVASNSTKGGQMAAKYMIEKLGKD 169 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDV 208 AK+ ELQGI G SA RERG+GF A A K ++++ Q A FDR KGL V +N+L + D+ Sbjct: 170 AKIAELQGIPGASATRERGKGFDGA-AKGKLDIVSKQTAGFDRAKGLTVTENILQGNGDI 228 Query: 209 QAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAK 268 +F+QNDEMALGA++A++ AGK + +VGFDG DG KAV G +AAT+AQ P+++G Sbjct: 229 VGIFSQNDEMALGAVQAVKAAGKK-ITIVGFDGEADGIKAVKAGDMAATVAQKPEEMGRL 287 Query: 269 GVETADKVLKGEKVQAKYPVDLKLVVKQ 296 ++ A G+ V+ L LV + Sbjct: 288 ALQAAYDHFNGKTVKKNVESPLSLVTTE 315 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/281 (43%), Positives = 178/281 (63%), Gaps = 4/281 (1%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 T + +A AK TI +ST NPFFV +++ AQK+AD+LG + D+ ++ A + + + Sbjct: 40 TTTGSASAK-TITFALSTQANPFFVQMRESAQKKADELGLAINFQDAADDSATQSNQLAN 98 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 GT +++INPTDSDA+ AV+ IPV+ +DR V S+IASDN GGK A Sbjct: 99 AAASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDRAVNNANVASYIASDNETGGKQA 158 Query: 138 GDYIAKKA-GEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGL 195 ++ GEG +++ LQG G+SA+RERG+GF + + + V+A Q A+F+R KGL Sbjct: 159 AKVLSDAINGEG-EILVLQGKTGSSASRERGKGFDEGLKDNPNIKVVAKQTAEFERAKGL 217 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 +V NLL AHP+V+A+FA+NDEMALGA+ AL + DV V+GFDG D KA+ DG++ Sbjct: 218 DVTTNLLQAHPNVKAIFAENDEMALGAIEALGSKAGKDVKVIGFDGAEDALKAIKDGRMY 277 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 A+IAQ P ++ + V A K+LKGE K V++ K+ Sbjct: 278 ASIAQQPVKMAEQAVIEASKLLKGETATKKMQVEVVAATKE 318 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 111/254 (43%), Positives = 158/254 (62%), Gaps = 1/254 (0%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + +ST NNP+FVS+ + + A + L V D+QN+ A +L NVQ+ + +LI Sbjct: 51 IGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVDAILI 110 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NP DSDA+ A+K AN A+IPVI +DR + G V++ +ASDNV GK+A + K G+ Sbjct: 111 NPVDSDAIVPAIKAANNAHIPVIAMDRGSNGGTVLTTVASDNVAAGKMAAQAVEKLVGKN 170 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDV 208 KV+EL G G SA +RG+GF N+L+SQ A+FDR GLN QN+L +H DV Sbjct: 171 VKVLELSGTPGASATIDRGKGFNSEAKTLGLNILSSQSANFDRTTGLNTTQNMLQSHKDV 230 Query: 209 QAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAK 268 QA+FAQNDEMALGA +A+Q G+ + + G DG + A+ G + ATIAQ P +IG Sbjct: 231 QAIFAQNDEMALGAAKAVQATGQK-IAIFGIDGESETHDAIKAGTMTATIAQQPAKIGEM 289 Query: 269 GVETADKVLKGEKV 282 ++ +G+K+ Sbjct: 290 ALQATYDYYQGKKI 303 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/287 (39%), Positives = 183/287 (63%), Gaps = 2/287 (0%) Query: 11 SAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK 70 SA A +A + K I L ++T NPFFV +KDG QK AD+ G L + D+Q++P Sbjct: 50 SAEAENAGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTI 109 Query: 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDN 130 ++ +V++L + ++I+ DSDA+ ++++ N+A IPV T+DR+A GEV+SHI D Sbjct: 110 QMKDVENLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEVISHIGYDA 169 Query: 131 VLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADF 189 + G++AG Y+ G K++E+QGI GT+ A+ R +GF + + + ++A Q ADF Sbjct: 170 IKSGRMAGQYLVDTLGGKGKIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVACQVADF 229 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKA 248 DR KG++VM+N+L A+P++ ++A NDEM LGAL A++ AG++D +V +G D D A Sbjct: 230 DRAKGMSVMENILQANPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCDAIDDTLDA 289 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + GK+ ATIA+ P +G + TA L+G++V+ +D +LV + Sbjct: 290 MKAGKVDATIAEPPFFLGKAILNTAYDYLEGKQVEPYVILDNQLVTQ 336 >UniRef50_C8NCI4 Ribose ABC superfamily ATP binding cassette transporter, periplasmic ribose-binding protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI4_9GAMM Length = 184 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/134 (73%), Positives = 114/134 (85%) Query: 160 TSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMA 219 TSAARERG GF +A AH F +LASQPADFDR KGLNVM+NLLTA P+VQ VFAQNDEMA Sbjct: 49 TSAARERGAGFAKAAQAHDFKILASQPADFDRSKGLNVMENLLTAQPEVQGVFAQNDEMA 108 Query: 220 LGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG 279 LGALRA+Q AGK D+++VGFDGT DG KAV GK+AATIAQ P++IG GV+TADKVLKG Sbjct: 109 LGALRAIQAAGKKDLVLVGFDGTDDGVKAVKGGKMAATIAQQPEKIGEIGVQTADKVLKG 168 Query: 280 EKVQAKYPVDLKLV 293 EKV+A PV+LKL+ Sbjct: 169 EKVEASIPVELKLI 182 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 111/281 (39%), Positives = 165/281 (58%), Gaps = 10/281 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K +A+V+STLNNP+FV L + A++ A++LGY + DSQN+ AKE A+ + G Sbjct: 33 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDA 92 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIAGDYIAKK 144 ++ NPTD+D VK A +A IPV +DR +G V+ I SDN GG + G+Y K Sbjct: 93 IIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDNYYGGVLMGEYFVKF 152 Query: 145 AGE---GAKVI---ELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNV 197 E AK I EL GI +R GF V + +F ++A Q A+FDR V Sbjct: 153 LKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKV 212 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK-LAA 256 + +L AHP+++A++ ND MALGA++A + AG++D+ + GFDG D A+ +GK + A Sbjct: 213 TEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVA 272 Query: 257 TIAQLPDQIGAKGVETADKVLKGEKVQAKY-PVDLKLVVKQ 296 TI Q P + VE AD+ L+GE+ + PV ++LV ++ Sbjct: 273 TIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRE 313 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 112/262 (42%), Positives = 168/262 (64%), Gaps = 5/262 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 + L +ST NPFF+ ++ GAQ +A++LG +L VLD+ ++ + A + D++ + + ++ Sbjct: 34 VTLALSTEKNPFFLQVRYGAQAKANELGIDLTVLDAGDDAEVQAAQLDDVS---SGVAVV 90 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NP DS+A+ AV N+ IP IT+DR T +V + I S+N GG A +AK Sbjct: 91 NPADSEALAPAVSQLNEKGIPAITVDRTITGADVAALIDSNNTEGGAAAASVLAKAIRAQ 150 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 +VI L+GI G+S++ ER EGF QA+A H + ++A++ ADFDR +++ +LL HPD Sbjct: 151 GEVIVLRGIEGSSSSAERYEGFTQAMAEHPRVRIVAAEAADFDRDTARDLVTDLLADHPD 210 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGA 267 V +FA+NDEMALGA+ AL DV VVGFDGT +G +AV + KL ATIAQ ++GA Sbjct: 211 VAGIFAENDEMALGAVDALGERAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGA 270 Query: 268 KGVETADKVLKGEKVQAKY-PV 288 +E A K+L GE ++ + PV Sbjct: 271 TAIEQAGKLLDGEAAESVHTPV 292 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 165/270 (61%), Gaps = 2/270 (0%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKIL 86 +A+V+ LN+ ++ +++ GA A +LG + VL +++ + + + ++D V+G L Sbjct: 41 VAVVLKALNSDYWKTVQAGANDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDAL 100 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 ++ P +A A + IPV+ +D A + S + + N+ GK+ G+YI+KK Sbjct: 101 VVAPLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKKSFVGTGNIAAGKLGGEYISKKLK 160 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHP 206 +G + I ++G+ G ER +G Q+A+ A V+ QPA+ +R K ++VM+NLL HP Sbjct: 161 KGDEAIIIRGVPGDRTQDERTQGAQKALEAAGIKVVEIQPANSEREKAISVMENLLQTHP 220 Query: 207 DVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIG 266 +++ VF NDEMALGA++ALQ AGK +++ +G DG+PD K++ +G L T+AQ IG Sbjct: 221 NIKGVFCTNDEMALGAVKALQQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIG 280 Query: 267 AKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 KGVETA KVL+GEKV+ + LV KQ Sbjct: 281 KKGVETAVKVLRGEKVETRIDTGTTLVDKQ 310 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/268 (37%), Positives = 165/268 (61%), Gaps = 12/268 (4%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 T+ L +S+L+N FF+ ++ G + + ++G L+ ++ + AK+L++++DL + IL+ Sbjct: 43 TVGLSLSSLSNAFFIGMEKGVKDKTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILI 102 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK---- 143 +N D+DA+ AVK A +ANIP+I LDR A ++ + + +DNV G+ A + I K Sbjct: 103 VNALDADAIVPAVKKAKEANIPIIFLDRGANSEDMTTFLETDNVKMGEQAAELILKALKD 162 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLL 202 K G V+E++G+ GTSAAR+RG+GF + HK ++A Q DF++ K +NVMQN+L Sbjct: 163 KGLNGGNVVEIEGLQGTSAARDRGKGFHNVMDKHKEVKIVAKQAGDFNQEKSMNVMQNIL 222 Query: 203 TAHPDVQAVFAQNDEMALGALRA------LQTAG-KSDVMVVGFDGTPDGEKAVNDGKLA 255 A+P + AVF ND+ +GA +A ++ AG K + VVG DG ++V G + Sbjct: 223 QANPKIDAVFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNID 282 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQ 283 +I+Q P +G + VE K +KGE+V+ Sbjct: 283 VSISQDPIGMGVQAVEVGLKAIKGEQVE 310 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/258 (39%), Positives = 153/258 (59%), Gaps = 6/258 (2%) Query: 40 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 99 F+V L+ G Q+ AD G L+ D + A + V+D +G +++ P DS+A Sbjct: 73 FYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGVDGIVLCPIDSNAAVTE 132 Query: 100 VKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAG 159 + NQA IP++T D G+V SHIASDN LGG++A +I ++ G KV + Sbjct: 133 AETINQAGIPLVTTDIAVAGGDVASHIASDNTLGGQLAAQFIGEQLGGTGKVALINNPTI 192 Query: 160 TSAARERGEGFQQAVAAHKF---NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQND 216 TS ER GF + A K+ ++A Q + R KGL+VM+N+L ++PDVQ VFA ND Sbjct: 193 TSLI-ERETGFTDTM-AQKYPDIEIVAVQSGESKREKGLSVMENILQSNPDVQGVFAVND 250 Query: 217 EMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK-LAATIAQLPDQIGAKGVETADK 275 M LGAL+A+Q A + D+++VGFD T + K + +G L A++AQ P ++G +ET K Sbjct: 251 MMGLGALQAVQAAQRDDIVIVGFDATEEAVKYIKEGSALKASVAQNPVELGKTTMETMLK 310 Query: 276 VLKGEKVQAKYPVDLKLV 293 V+ GE+V+ PV ++LV Sbjct: 311 VIAGEQVEKNIPVPVELV 328 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 159/286 (55%), Gaps = 13/286 (4%) Query: 23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRG 82 A K I VSTLNN FFV LK G +K A + G++LV ++ + +++ + +L +G Sbjct: 64 AGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLLSQG 123 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIA 142 L++NP DS A+ AV+ AN NIPV TLDR + G+V S +ASDNV G+ A +IA Sbjct: 124 VTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGKVTSFVASDNVALGQTAAKWIA 183 Query: 143 ----KKAGEG-AKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLN 196 K+ G V++L G+ GT+AA +R +GF +A + V+A Q FD+ K LN Sbjct: 184 DQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFDQEKSLN 243 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-------KSDVMVVGFDGTPDGEKAV 249 M N+L +P + AVF ND+ +GA +A+ AG K ++V+G DGT A+ Sbjct: 244 AMTNILQKYPQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGTAQALSAI 303 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GK ATI+Q P Q+ AK ++ + V A Y L+ K Sbjct: 304 RAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPTLLIDK 349 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 171/286 (59%), Gaps = 11/286 (3%) Query: 5 KLATLVSAVALSATVSANAMAKDTIALVVS--TLNNPFFVSLKDGAQKEADKL--GYNLV 60 + L + + L A + +A+D I + S T+N+P+ V++ +G +K A + +L+ Sbjct: 9 RTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLI 68 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 V D N+ +K++A+V+ L +G K+L+I+P A+ VK A A I V+TLDR+ Sbjct: 69 VTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNT- 127 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 V H+ +N+ G AG+++AKK +IELQG AG SA +R +GF +A+A H Sbjct: 128 PVTVHVGGENLPLGVGAGEFLAKKLNGKGNIIELQGTAGASATIDRNKGFAEAIAKHPDM 187 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAH-P-DVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 V+ASQ D+ R K + M++++ P +QAV+A NDEMALGA++ L+ AG+ ++V V Sbjct: 188 KVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGRLNEVAV 247 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 VG DG +AV GKLAAT + +G+ETA KV KGE+V Sbjct: 248 VGIDGQETAFEAVKQGKLAATFVY--PFVAPEGIETAYKVAKGEEV 291 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 170/299 (56%), Gaps = 11/299 (3%) Query: 5 KLATLVSAVALSATVSANAMAKDTIALVVST--LNNPFFVSLKDGAQKEADKLGYNLVVL 62 KL L A +L+ + A A DT+ L + NPF+ S++ GA+++A +LG +VVL Sbjct: 2 KLVKLFLASSLAIIIGTLAFA-DTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVL 60 Query: 63 D--SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 +++ ++ V+D +G + I TD +A+ ++ A A IPV+ +D TKG Sbjct: 61 SPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFID---TKG 117 Query: 121 --EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + V+ I +DN G K+A D+I + G+ V LQGI S + R +G + Sbjct: 118 INKGVTFIGTDNKAGAKMAADFICDRVSRGSDVAILQGIITQSTGKARADGAHAGLKGCG 177 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVV 237 N++A QPA++DR +G VM+N+LT + ++AVFA ND MALGA+ AL+ A +DV+VV Sbjct: 178 LNIVAEQPANWDRAQGRTVMENILTRNQKLKAVFASNDNMALGAVEALKDADMLNDVIVV 237 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 GFD PD K++ G++ ATIAQ +GA GVE A ++ KG + LV K+ Sbjct: 238 GFDANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSLPPVVDTGTLLVTKK 296 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 164/281 (58%), Gaps = 6/281 (2%) Query: 20 SANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL 78 S A+A D TI + T +PF+V LK +K AD G L+V + + K++++V+D Sbjct: 21 SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 VRG ++++P DS V A+ A +A IPVIT+D A EV +H+A+DN GG+IAG Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAG 140 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNV 197 + +AK G + + + R+R GF++AV+ + ++A QP R + LN Sbjct: 141 ETMAKVL-NGKGQVAIIDYPVVQSVRDRVAGFKEAVSKYPGIEIVAIQPG-ITRPEALNT 198 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAV-NDGKLA 255 QN+L AHP+V +F D+ AL ++ A+++AG + DV V+GFDG + AV + Sbjct: 199 AQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAVKKEESFV 258 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 A + Q P ++G G+ETA +V+KGEKV+ + PV L K+ Sbjct: 259 AVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKE 299 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 160/249 (64%), Gaps = 15/249 (6%) Query: 43 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM 102 S+KD EA+K G+ L+V D+Q+N AK++++V+DL + +L+++P + + + A++ Sbjct: 109 SMKD----EAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNIDLLILSPREFEGLETALQT 164 Query: 103 ANQANIPVITLDRQATKGE----VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIA 158 A + ++PVI +DR A KGE V++IA+D V G+ AG+++ K G +IEL G Sbjct: 165 AKENSVPVILVDRLA-KGEAGVDYVTYIATDFVWEGQAAGEWLKDKTGGTCNIIELTGTV 223 Query: 159 GTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAH-PDVQAVFAQND 216 G+S+A++R GF V ++ ++ASQ +F+R +G VM+NLL AH +V AVF ND Sbjct: 224 GSSSAQDRATGFAGVVDQNEGMKIIASQTGNFERSEGQKVMENLLQAHGGEVDAVFCHND 283 Query: 217 EMALGALRALQTAG---KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETA 273 +MALGA++A++ AG D++V+G DG D K+V G+++AT+ P G +T Sbjct: 284 QMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKSVIAGEMSATVVSSP-MYGPITFDTV 342 Query: 274 DKVLKGEKV 282 +K+L G++V Sbjct: 343 EKILAGQEV 351 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/266 (39%), Positives = 148/266 (55%), Gaps = 5/266 (1%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 TL +PF+V LK+GA+ A G L+ LD+ + K+ ++QDL R +L+INP + D Sbjct: 42 TLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQDLLTRKVDVLIINPVNPD 101 Query: 95 AVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI----AKKAGEGAK 150 AV A+ A + +PVIT+DR G V +H+ DNV GK GD + KK K Sbjct: 102 AVKPAIAAAQKNGVPVITVDRSINGGGVTAHLGRDNVKMGKAVGDAVLAELKKKGTTRGK 161 Query: 151 VIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQA 210 VIE+QG AG + R +GF A+ F ++A A++ R + MQ+LL AHPDV+ Sbjct: 162 VIEIQGDAGGTVMAARRDGFHDALKGSGFKIVAGPYAEYTRANAVTAMQDLLQAHPDVKV 221 Query: 211 VFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDG-KLAATIAQLPDQIGAKG 269 V+A ND+MA+GAL+ L AGK DV V G DG + ++ G + AT P +G Sbjct: 222 VYAHNDDMAMGALKVLAEAGKKDVFVAGVDGLSEALASMAGGDQYVATALNDPRYLGDMT 281 Query: 270 VETADKVLKGEKVQAKYPVDLKLVVK 295 V+TA + G+KV A K V K Sbjct: 282 VQTARAIKAGKKVPAFVDAGTKAVTK 307 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/265 (34%), Positives = 150/265 (56%), Gaps = 5/265 (1%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKK+ L +A+A + + + I L PF V ++ A K A +LG NL VL Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 DSQ + K++A++++ RG + +++P D +AV AV A +PV+TLDR + Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDKK 120 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFN 180 V H ++N GG+ GD++ + GA ++ L G G+S+ ER +G + ++ A K+ Sbjct: 121 VPHFGANNYKGGQAIGDFVKARFPNGADIVLLTGQPGSSSNIERTQGIRDSLKAGGSKYR 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG--KSDVMVV 237 ++A Q ++ R +G+ +++++L + P Q + + ND+MALGA+ ALQ+ G +VMV Sbjct: 181 LVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQSQGLKPGEVMVT 240 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLP 262 GFD P+ V DG LAAT Q P Sbjct: 241 GFDAVPEALARVRDGWLAATADQRP 265 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 149/260 (57%), Gaps = 2/260 (0%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TI L V+ L FF +K EA K G ++V D++ + A ++ +QD R ++ Sbjct: 42 TIGLAVANLQADFFNQIKQSVTAEAKKKGIKVIVSDARGDAATQVNQIQDFISRQVSAII 101 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 P + A G VK AN+A IPV+T+DR S IASD+V + G+Y+ K++G Sbjct: 102 YIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGKSFIASDSVAAARTLGNYVVKESGG 161 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHP 206 ++ LQG GT+ +R +GF QA+ A V++ QPAD+ + K +V Q++L AHP Sbjct: 162 KGQLAILQGQIGTTPQVDRQKGFGQALKNAPGIKVVSQQPADWAQDKAYSVSQDMLQAHP 221 Query: 207 DVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 + ++ Q D MALGA +A++ +G K ++VGFDG G KAV G + AT+ Q ++ Sbjct: 222 GIDILWGQADAMALGAAQAVKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKM 281 Query: 266 GAKGVETADKVLKGEKVQAK 285 G V TA ++KG+KV A+ Sbjct: 282 GRMSVNTAVDIIKGKKVPAQ 301 >UniRef50_Q67RD5 Ribose ABC transporter ATP-binding protein n=7 Tax=Bacteria RepID=Q67RD5_SYMTH Length = 429 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/147 (58%), Positives = 105/147 (71%), Gaps = 4/147 (2%) Query: 153 ELQGIAGTSAA--RERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQ 209 E+ GIAG A RG+GF +AV +V+ASQPADFDR KGL VM+N+L AHPD+ Sbjct: 283 EILGIAGLMGAGRTHRGQGFHEAVDGVQGIDVVASQPADFDRAKGLTVMENILQAHPDIV 342 Query: 210 AVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAK 268 AVFA NDEMALGAL A++ AGK+D + VVGFD T D KAV +G++AAT+AQ P ++G Sbjct: 343 AVFAHNDEMALGALEAIEAAGKADQIKVVGFDATDDAVKAVQEGRMAATVAQKPKEMGRL 402 Query: 269 GVETADKVLKGEKVQAKYPVDLKLVVK 295 GVETA K L GEKV PV L+LV K Sbjct: 403 GVETALKHLNGEKVDEYIPVPLELVTK 429 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 169/284 (59%), Gaps = 17/284 (5%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKIL 86 IA+V+ TL+NPF+V +K+G +KEA G +++ S+ + ++L +++L +G K + Sbjct: 47 IAIVLKTLSNPFWVEMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAI 106 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQA-------TKGEVVSHIASDNVLGGKIAGD 139 I P A+ AN+ I V+ +D + + G V++ + +DNV G + Sbjct: 107 GIAPLSPVNTIPAIVEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAE 166 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVM 198 YI K EG +V ++G +G ++ R +G +A A KF ++ASQPAD+DR K L+V Sbjct: 167 YIIGKLPEGGEVAIIEGKSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDVA 226 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAAT 257 NL+ +P+++A++A ND MALGA++A+ AGK+ ++VVG DG P+ ++++GKL AT Sbjct: 227 ANLIQKYPNLKAIYACNDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGKLNAT 286 Query: 258 IAQLPDQIGAKGVETADKVLKGEK-----VQAK-YPVDLKLVVK 295 +AQ P IGA ++ + +K + ++AK PV+ L+ K Sbjct: 287 VAQDPAMIGATSLKILIEAIKDKPQISPDIEAKEVPVESNLISK 330 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 163/303 (53%), Gaps = 27/303 (8%) Query: 6 LATLV-SAVALSA-------TVSANA-------MAKDTIALVVSTLNNPFFVSLKDGAQK 50 LA LV S VALS VS+++ ++K T+ + + T NPFF + D + Sbjct: 15 LAWLVLSCVALSCGGPSSPTPVSSDSGESTKGSVSKGTVGVSLLTTTNPFFNVIADNIKS 74 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 E K GY++ V+ + + A++ V+D V G +++ P DS +G A++ A A IPV Sbjct: 75 ELVKEGYDVEVVSGEFDVARQKNQVKDFIVAGHAAIVLCPCDSRGIGPAIQEATAAGIPV 134 Query: 111 ITLD--RQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE-GAKVIELQGIAGTSAARERG 167 T D A EVVSHIA+DN+ GGK A + + + G G KV+ L A S R Sbjct: 135 FTADIACLAPGAEVVSHIATDNLGGGKQAAEAMIEAVGSAGGKVVILDFKAAESCIL-RV 193 Query: 168 EGFQQAVAAHK-------FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMAL 220 +GF++ + H +++ P D + K ++ L AHPD+ +FA ND AL Sbjct: 194 QGFKEVIDKHNSENPSSAITIVSELPGDGQKDKSYKAAEDALQAHPDLAGIFAINDPSAL 253 Query: 221 GALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG 279 GA AL+ A K+D V +VGFDG PDG +A+++GK+ A Q PDQIG + + +G Sbjct: 254 GARAALEKANKADQVKIVGFDGQPDGMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRG 313 Query: 280 EKV 282 E+V Sbjct: 314 EEV 316 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 151/258 (58%), Gaps = 7/258 (2%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKELANVQDLTVRGT 83 +K TI + + L P+ V + + +K A+K+ +++ D+ + +K++++V++ + Sbjct: 47 SKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVENFMTKKV 106 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 +L+I+P ++ + + VK A IPV+ LDR+ ++I +DNV G+ AG+Y Sbjct: 107 DLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGEAFTTYIGADNVQIGRQAGEYFKN 166 Query: 144 KA-GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLL 202 +G K+++L+G++G++ A ER +GF + +A K V+ + +++R G M LL Sbjct: 167 TLLPQGGKIVQLKGLSGSTPAAEREKGFMEGIAGSKIEVVDTADGEWERSVGQQKMDALL 226 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP---DGEKAVNDGKLAATIA 259 AHPD+QAV+AQND MA GA A Q AG+ D+ VG DG P G KAV G+L+AT Sbjct: 227 KAHPDIQAVYAQNDPMAEGAWLAAQAAGRKDLKFVGIDGLPIESGGIKAVEQGRLSAT-- 284 Query: 260 QLPDQIGAKGVETADKVL 277 L G + VE A K+L Sbjct: 285 NLYPTGGEEAVEAARKLL 302 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 169/302 (55%), Gaps = 17/302 (5%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK+ TL S +A+ V + ++ A+++ TL+NPF+V++K+G + EA LG ++ + Sbjct: 1 MKRFKTLKSCLAILGLVCSVSVYSAEYAVILKTLSNPFWVAMKEGIENEAKALGVDVDIF 60 Query: 63 --DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR----- 115 S+ + +L +DL + K + P + A + I ++ LD Sbjct: 61 ASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIK 120 Query: 116 --QATKGEVVSHIASDNV-LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 Q KG V + I +DNV +GGK A + K EG +V ++G AG ++ R G ++ Sbjct: 121 NLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGGEVAIIEGKAGNASGEARRRGARE 180 Query: 173 A-VAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 V + ++ASQPAD+DRIK L+V N+L+ +P+++A + ND MA+G +A+ AGK Sbjct: 181 VFVKSSSIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYVANDTMAMGVAQAVINAGK 240 Query: 232 S-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE-TADKVLKGEKVQAKYPVD 289 ++VVG DG P+ K V++ KL ATIAQ P IGAKG++ D G+++ PVD Sbjct: 241 QGKILVVGTDGVPEARKMVSERKLTATIAQDPAMIGAKGLKLLVDAARAGKQI----PVD 296 Query: 290 LK 291 ++ Sbjct: 297 VE 298 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 96/276 (34%), Positives = 155/276 (56%), Gaps = 18/276 (6%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTVRGTKI 85 TIA ++ T NPF+ +++ G + A K NL++ + S+ + +L +L R + Sbjct: 26 TIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQAVASETDVEPQLNACLNLLQRKPQA 85 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLD---------RQATKGEVVSHIASDNVLGGKI 136 L++ +S + +K ANQ NIP++ LD R+ K + I+SDN G Sbjct: 86 LVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAVLQREGVK--IAFSISSDNRRAGAS 143 Query: 137 AGDYIAKKAGEG--AKVIELQGIAGTSAARERGEGFQQAVA--AHKFNVLASQPADFDRI 192 A +Y+ K G+G KV+ ++G+AG R +GF + + A ++A+ P D+DR+ Sbjct: 144 AAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGFTERLKQIAPNAQIVATLPGDWDRL 203 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDG 252 K N+ + L HPD+ A++ ND MALGA+ A+ AGK V+VVG DG D K++ G Sbjct: 204 KAANITNDTLQRHPDLAAIYCANDTMALGAVEAVFAAGKK-VLVVGTDGNSDAVKSIRAG 262 Query: 253 KLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 +L A++AQLP +G++ +E KV+KGE+V K V Sbjct: 263 RLNASVAQLPFLVGSRAIENVLKVIKGEQVDPKIIV 298 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 100/290 (34%), Positives = 164/290 (56%), Gaps = 9/290 (3%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTL--NNPFFVSLKDGAQKEADKLGYNL 59 N+K+ + AVAL A+ S N AKD + S L ++PF+++L +G ++ A NL Sbjct: 3 NLKRFTAI--AVAL-ASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINL 59 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 V + + AK++ +++D + ++I+P DS + +K A +ANIPVIT+D A Sbjct: 60 KVSVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAEN 119 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 ++VSHIA+DN GG +AG K+ G +V+ L G S+ R +GF+ AVA Sbjct: 120 SKIVSHIATDNYGGGVVAGKLAVKQLGGKGQVVMLS-YPGISSVEARLQGFRDAVADTDI 178 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239 ++A QP R + + N+L A+PD +FA D+M +GA A+ T KS +V+GF Sbjct: 179 KIVAVQPGK-TREESMTSTINMLQANPDTDLIFAFGDDMMIGAGLAV-TKQKSKAVVIGF 236 Query: 240 DGTPDGEKAVNDG-KLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 DG P+G KAV++ + + Q D +G ++ L G++V+++YP+ Sbjct: 237 DGMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPI 286 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 148/256 (57%), Gaps = 3/256 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 +T+NNPFF ++++ ++ D+ G L+V+D+QN+ K+++ V+DL +G +L + Sbjct: 70 FGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQGIDLLFL 129 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHI-ASDNVLGGKIAGDYIAKKAGE 147 P DS ++ ++++ +A +PV+ D ++V+ I SDN G++ + + KK E Sbjct: 130 CPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVNTIIVSDNYYAGELVAEDMMKKLPE 189 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 G+KV L A +R GF+ + F +++ D L + +++L +PD Sbjct: 190 GSKVCILTS-PSAEACIKRQNGFKDKADGY-FKIVSEIDGKGDTATSLGIAEDVLQGNPD 247 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGA 267 + A +A ND A+G ++AL++ K+DV+V G DG P G++A+++G + AT AQ P IG Sbjct: 248 LGAFYAINDPSAIGCVQALESQKKTDVLVYGVDGQPMGKQAISEGTMEATAAQSPINIGK 307 Query: 268 KGVETADKVLKGEKVQ 283 + V A K+L GE V+ Sbjct: 308 ESVAAAYKILSGESVE 323 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 142/272 (52%), Gaps = 3/272 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K T+NNPFF L+ + E +K G L+ +D + +K++ + D+ +G + Sbjct: 40 KHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQGVEA 99 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKK 144 + +NP D + V ++ +ANIP+I D + V +++ SDN GK+ GD + K+ Sbjct: 100 VFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDMNYVTAYVGSDNKNAGKVCGDDLVKR 159 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTA 204 G K+ L ++ +R GF+ A+ F ++A Q D + + ++L + Sbjct: 160 YPNGGKIAILN-CPTMNSINDRIAGFKSAIEGKNFTIVAEQDGKGDLQTSMKLADDILQS 218 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV-NDGKLAATIAQLPD 263 H D+ A+ ND ALGAL A ++A +S +++ G DG+PD +K + + G+ T AQ P Sbjct: 219 HSDIVAIMGGNDPTALGALAACKSAKQSKILIYGVDGSPDAKKEIASGGQFVGTGAQSPK 278 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 QIG K E KVL + V+ K PV L+ K Sbjct: 279 QIGVKSAELGYKVLNKQNVEKKTPVQTFLINK 310 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 162/287 (56%), Gaps = 15/287 (5%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 T A A+ + + + L+ PFFV+++ + EA KLG + VLD+QNN +K+++++Q Sbjct: 29 TGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQISDLQA 88 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGGKI 136 V+G K++++ PTDS A+ A + + VI++DR G+ V H+ +DNV GG+ Sbjct: 89 AAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKTAVPHVGADNVAGGRA 148 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKG 194 D++ K GA+V+ + G+S++ ER +G +AA F ++ Q A+ R + Sbjct: 149 MADWVVKTYPAGARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQTANSKRDQA 208 Query: 195 LNVMQNLLTAH----PDVQAVFAQNDEMALGALRALQTAG--KSDVMVVGFDGTPDGEKA 248 L V QN+LT+ PDV + ND+MA+GAL A++ AG + V V+GFD P+ Sbjct: 209 LTVTQNILTSMRDTPPDV--ILCLNDDMAMGALEAVRAAGLDSAKVKVIGFDAIPEALAR 266 Query: 249 VNDGKLAATIAQLPD-QIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + G++ AT+ Q P QI + DK+ G +++ V LK V+ Sbjct: 267 IKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKS---VSLKPVL 310 >UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STD2_9RHIZ Length = 329 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 160/299 (53%), Gaps = 11/299 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 LA +A A VSA+A +A +V L+NPFF +++ G +++A G N+ V + Sbjct: 7 LALSAGLLATIAPVSAHAEDAAKVAAIVKGLDNPFFQTMQKGIEEQAKASGVNVSVQAAA 66 Query: 66 N--NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR-------Q 116 N + + + + ++ L+NP + A+ Q P++ +D + Sbjct: 67 NMGDATGQADRLTAMAMQDFDCYLVNPISVSNLVQALVPVAQKKKPIVNIDSTIDAEQAK 126 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 A V ++I +DNV G +AG+ + K +G+KV + GI G + R +GF+QAV Sbjct: 127 AAGFAVSTYIGTDNVAAGALAGEEMLKLVPKGSKVALIAGIVGDVGSNARIKGFKQAVEG 186 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV 236 K V+ AD+DR K L ++L AHPD+ FA ND MALG RA+QT+GK DV V Sbjct: 187 -KLEVVVMVSADWDREKALTAATDILAAHPDLAGFFAANDIMALGVERAVQTSGK-DVKV 244 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 +G DG D K++ G+L+AT+AQ P +GA G+E KG+++ A P + L+ K Sbjct: 245 IGLDGIVDALKSIAAGELSATVAQYPYVVGAMGLEACAVAAKGKELPANVPAPVLLINK 303 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 154/270 (57%), Gaps = 4/270 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + ++ N F V++ D + +A ++G L+ +D++ + K++ V+ +G +++ Sbjct: 34 IGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQGVDAIIM 93 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NP + +A A+K+A A IP+I ++ + T + + + SD+ +IA YIA+K G Sbjct: 94 NPAEVEASSPAIKLAMDAKIPIINVNSE-TSAKPTAFVGSDDTESARIAMKYIAEKLGGK 152 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPD 207 ++ + G G +A +R G + + A+ +LA Q ++DR KG+++ +N + ++ D Sbjct: 153 GNILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWDRAKGMSLTENWIQSYGD 212 Query: 208 -VQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 + A+FAQNDEM +GA++AL+ AG K V+VV D PD +AV G L AT+ Q + Sbjct: 213 KINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDALQAVKKGTLDATVFQNAKEQ 272 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G K +ETA K K E + + + +LV K Sbjct: 273 GGKAIETAVKAAKKEAFEKEVLIPFQLVDK 302 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 150/265 (56%), Gaps = 9/265 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 +K TI + + TL+NPFF + D E K GY+ VV+ + AK+ ++D V+ Sbjct: 39 SKGTIGVSLLTLDNPFFKVIGDNIVSEGKKRGYDAVVVSGDKDVAKQSNQIKDFIVKKVS 98 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG--EVVSHIASDNVLGGKIAGDYIA 142 ++++P DS ++ ++ AN A IPV T+D + ++ + IA+DN GGK A + Sbjct: 99 AIVLSPCDSKSIVPVIQEANAAGIPVFTVDIPCHEPGVKIATQIATDNYGGGKEAAKAMI 158 Query: 143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH------KFNVLASQPADFDRIKGLN 196 + GE I + + + R +GF++ + AH K +++A + + +G Sbjct: 159 EALGEAGGKIAILHFKQAESCQLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYK 218 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLA 255 ++ L A+PD+ +FA ND ALGA AL+ AGK+D V++VGFDG P+G++A+ +GK+ Sbjct: 219 AAEDTLQANPDLHGIFAINDPAALGARAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIY 278 Query: 256 ATIAQLPDQIGAKGVETADKVLKGE 280 A Q PD++GA+ V+ + KGE Sbjct: 279 ADPIQFPDKMGAQIVDAIIQQSKGE 303 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 147/267 (55%), Gaps = 9/267 (3%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKE--LANVQD 77 A A + T+ L++ +L N FF ++ GA+ A++ G Y L+ + QN E + V++ Sbjct: 58 AAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAVEN 117 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV------VSHIASDNV 131 +G +++ P DS A+ ++ A +A I VI D G + ++ + DN Sbjct: 118 FITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGPDNR 177 Query: 132 LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDR 191 +G ++AG+ + + GEG +V+ ++G G A +R GF+ A+A H +L S+ A ++ Sbjct: 178 MGAEMAGNALGEALGEGGRVVIIEGNPGADNATQRRLGFEDAIATHGLELLESRTAHWET 237 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 + V +LTAHPD+Q V A ND MA+G + AL AG+ D++VVGFD P + D Sbjct: 238 EEANQVFAAMLTAHPDLQGVMAANDSMAIGVIEALDAAGRDDILVVGFDAVPAVLPMIED 297 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLK 278 G++ AT+ Q + A ++ A +VL+ Sbjct: 298 GRMLATVDQFGQAMAANAIDLALEVLE 324 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 147/257 (57%), Gaps = 13/257 (5%) Query: 37 NNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAV 96 NNP+ ++ + A K G+ LV+ D+ ++ +K+++++Q++ + +L+ P + + Sbjct: 61 NNPWRLAETKSFKDIAAKCGWQLVMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPL 120 Query: 97 GNAVKMANQANIPVITLDRQATKG------EVVSHIASDNVLGGKIAGDYIAKKAGEGAK 150 V A +A IPVI +DR + + ++ I SD + G A D++ K G AK Sbjct: 121 APVVLQAKKAGIPVILVDRDVDQSVAKAGRDYITFIGSDFIDQGHRAADWLVKATGGKAK 180 Query: 151 VIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQ 209 +IEL+G G SAA +R +GF + +A + ++ASQ DF R KG VM+ LL AHPDV Sbjct: 181 IIELEGTTGASAANDRKKGFDEIIAKNPGMTIIASQSGDFARDKGRQVMETLLQAHPDVT 240 Query: 210 AVFAQNDEMALGALRALQTA----GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 AV+A NDEMALGA+ A++ A GK D+ +V DGT G A+ G+L A++ P Sbjct: 241 AVYAHNDEMALGAIAAIKAAGKQPGK-DIQIVTIDGTKGGMDAIAAGELGASVQSSP-FF 298 Query: 266 GAKGVETADKVLKGEKV 282 G + A + KGEK+ Sbjct: 299 GPLACDVAQRYAKGEKI 315 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 7/290 (2%) Query: 9 LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP 68 L S VAL+ + A A + + I + T +PF+++L D +KEA L V + + Sbjct: 10 LFSGVALA--MMAGAASAEGIGASLLTQQHPFYIALADAMKKEAQAENVPLEVSIANQDL 67 Query: 69 AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIAS 128 +K+LA+V+D +G +++I+P DS V +A+ A +A I VIT+D A +V S + + Sbjct: 68 SKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANNVDVTSFVGT 127 Query: 129 DNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPA 187 DN GG+ A + +AK GE V + + +R EGF++ +A + ++A QP Sbjct: 128 DNFAGGEKAAELMAKTIGEKGNVAVID-YPTVQSVVDRIEGFKKGIAKYPDIKIVAIQPG 186 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGE 246 R + L+ QN+L A+PD+ +F D+ AL A A+++A ++ V V+GFDG + Sbjct: 187 -ITRPEALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAKLENQVKVIGFDGMEEAR 245 Query: 247 KAV-NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 AV ND + IAQ PDQ+G VETA KV+KGE+V AK P+ +V K Sbjct: 246 NAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPIVPGVVTK 295 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 152/276 (55%), Gaps = 10/276 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 T+ S NP+ V+L + Q+ AD+ G N + D+ ++ A +AN++D+ + IL+ Sbjct: 51 TVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIEDMLAKDLDILV 110 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 I P + + + A + +PVI L + T+GE V+ + SD G+ + I +K + Sbjct: 111 IAPMEDTGLEAVLDEAAEKGVPVI-LSARTTQGEYVTTVYSDQAWEGERCAELIGEKIPD 169 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLLTAH 205 AKV+EL+GI GTS+ R +GF+ +A ++ Q A+F R + ++ M N+L A Sbjct: 170 -AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFSRQEAMDAMANILQAK 228 Query: 206 -PD-VQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 PD + AV+ NDEMALGA++A++ AG + D+ VVG DG + + V G++ T+ Sbjct: 229 GPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELVKSGEMLGTVQC 288 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 P G E K+L GE VQ + V +++ K+ Sbjct: 289 SPKH-GPTVFEVIQKILDGETVQKETIVPDQVITKE 323 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 160/290 (55%), Gaps = 13/290 (4%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEA--DKLGYNLVVLD 63 +A +SA +LS + K + + P+ ++ + ++EA K Y+ ++ D Sbjct: 11 VAIAISAFSLSGCIREKT--KKIVGFSQTENIGPWRIAETNSIKEEAAKHKKTYDFLITD 68 Query: 64 SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT--KGE 121 +Q +K+ A+++DL R ++ + P + + + A++ A A IP+ +DR+A GE Sbjct: 69 AQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDREAAGRPGE 128 Query: 122 -VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KF 179 VS + SD + G+ G+++AK A ++EL G AG+S A +R +GF+ A+A + Sbjct: 129 HFVSFLGSDFIAQGRRVGEWLAKATDGKASIVELTGTAGSSVAIDRAKGFRNAIATYPNM 188 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAH-PDVQAVFAQNDEMALGALRALQTAGK---SDVM 235 ++A+Q ADF R + VM+N++ A D+ AV+A NDEMALGA++AL++AG DVM Sbjct: 189 KIIATQTADFSRAAAVRVMENIIQAKGSDITAVYAHNDEMALGAIQALKSAGMKPGKDVM 248 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 V DG +A+ G+L ++ P + G T ++ G+K+ + Sbjct: 249 VGSIDGQKAALEAIIRGELGVSVESNP-RFGPLVFATMEEYFAGKKIPPR 297 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 90/253 (35%), Positives = 143/253 (56%), Gaps = 8/253 (3%) Query: 38 NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 97 NPF ++ + EA K G L+ +++Q+ +K++++VQDL +G +L+I P +SD Sbjct: 93 NPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKGADLLVIAPLNSDGWE 152 Query: 98 NAVKMANQANIPVITLDRQATKG---EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 ++ A+ IP++T+DR+ G + VS I SD V G+ A D + + G +V L Sbjct: 153 PVLRAASAKKIPIVTIDRKINAGPCKDYVSFIGSDFVEQGRRAADKMIEATGGKGEVAIL 212 Query: 155 QGIAGTSAARERGEGFQQAVA--AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 G AG + ER +GF+ VA A V+ Q DF R KG +V + L+ + P ++ ++ Sbjct: 213 LGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKGQSVTEQLIQSKPGIKGIY 272 Query: 213 AQNDEMALGALRALQTAGKSD--VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGV 270 A+NDEM LGA+ AL++AGK V +V DGT + K + DG ++ I P + G Sbjct: 273 AENDEMGLGAVNALKSAGKKPGAVKIVTVDGTRNAVKQIVDGWISGVIESNP-RFGPLAF 331 Query: 271 ETADKVLKGEKVQ 283 +T D KGE+VQ Sbjct: 332 QTLDTFTKGEEVQ 344 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 146/271 (53%), Gaps = 2/271 (0%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K + + + +L N F V L + A+K+A +LG L + D +P ++ V+ + G Sbjct: 53 KIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETMISDGVDA 112 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++NP D+ A AV A ANIPVI ++ + ++ S++ S +V G++ IA K Sbjct: 113 IILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKLTSYVGSKDVYAGELEMQAIADKI 172 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTA 204 G ++ L G G SA ER EG Q + + VLA + A++ R + + VM+N L A Sbjct: 173 GGKGNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSEAMTVMENWLQA 232 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 + AV A+NDEMALGA +A++ A K D+ +G DG D AV G L ATI Q Sbjct: 233 FDKIDAVVAENDEMALGARKAIE-AKKLDIPTIGVDGITDALDAVEKGTLIATIFQDGAG 291 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G+K +E A KGE V +Y +D + V K Sbjct: 292 QGSKALEIAVAKAKGENVDKEYWIDFEPVTK 322 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 152/281 (54%), Gaps = 12/281 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M K S + +S +A A A+V+ TL+NPF+V +K G + EA LG ++ + Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF 60 Query: 63 --DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ---- 116 S+ + +L +DL+ + K + P S + V A + I ++ LD + Sbjct: 61 ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMD 120 Query: 117 ---ATKGEVVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQ 172 G V + + +DNV G +I K G EG +V ++G AG ++ R G + Sbjct: 121 NLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATE 180 Query: 173 AVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 A A + ++ASQPAD+DRIK L+V N+L +P+++A++ ND MA+G +A+ AGK Sbjct: 181 AFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK 240 Query: 232 S-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 + V+VVG DG P+ K V G++ AT+AQ P IGA G++ Sbjct: 241 TGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLK 281 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 159/272 (58%), Gaps = 6/272 (2%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGT 83 ++ +A+V+ TL++P++ ++ GA+ +LG ++ V+ ++++ +++ ++D + Sbjct: 36 EERVAVVLKTLSSPYWKYVEAGAKAAGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSP 95 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 L+++P+ D V V + A +PV+ +D A S I ++N G G ++ Sbjct: 96 GALVVSPSQPDTV---VPVLETATVPVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSS 152 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLT 203 +G KV + G G +A ER +G + A+ ++A QPAD D+ K ++VM+N+L Sbjct: 153 LLQKGDKVAIISGALGNTATDERVKGAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQ 212 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 + DV+ VFA ND+MALG LRA++ G DV V+G DGT + +++ DGKLA TIAQ P Sbjct: 213 KNNDVKGVFAANDDMALGVLRAVEAKG-LDVKVIGTDGTLEAVESILDGKLAGTIAQNPY 271 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 ++G +GV+ A + GEKV + ++++ K Sbjct: 272 KMGYEGVKNALAAINGEKVDKRINSGVEVITK 303 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 149/278 (53%), Gaps = 7/278 (2%) Query: 3 MKKLATLVSAVALSATVSA--NAMAKDTIALV--VSTLNNPFFVSLKDGAQKEADKLGYN 58 M + L+++VA A V A + A+D + ++ V L PFFV + + + EA G N Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVN 80 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L D QN+ K+ A+++ V+ ++I+P D +A+ A++ A +A +PV+T+DR+ Sbjct: 81 LTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVD 140 Query: 119 KGE-VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV--A 175 + +++H+ +DNV GG+ + GAK+ LQG G A +R +G + Sbjct: 141 GVQGILAHVGADNVKGGEAEASAMVAAFPNGAKLFHLQGQPGAGPAIDRNKGVHNVLDPL 200 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 K+ ++ Q A+F R + L+V + L A+ A+ ND+MALGAL A +DV Sbjct: 201 KDKYQIIFEQTANFARAEALSVTEAGLAANGKPDAIICANDDMALGALEACAARNFTDVK 260 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETA 273 + GFD P+ AV DGKLA T+ Q P Q V+ A Sbjct: 261 IYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIA 298 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 153/289 (52%), Gaps = 10/289 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELA 73 SA ++ TI V TLNN + ++L +GA+ EA+ G + V D + +L Sbjct: 61 SAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLG 120 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK------GEVVSHIA 127 ++++ +L+ P+ SD + +A+ +A IP+I LD + T G + Sbjct: 121 IIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYG 180 Query: 128 SDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPA 187 ++N G K+AG+Y+AK +G K L+GI G + A +R GF + A V+A Q A Sbjct: 181 TNNYEGAKLAGEYVAKNFEKGTKTAILKGIEGQTNAADRYNGFIEG-AGDTVTVVAEQTA 239 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGE 246 +++ +G QN+++A+PDV+ F ND M +GALRA++ A + + ++GFD + Sbjct: 240 NWEVDQGYTAAQNIISANPDVELFFCCNDNMGIGALRAIKEANMQEQIQIIGFDAVSEAL 299 Query: 247 KAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V +G+ AT+AQ P ++G GV+ K+ G + ++ +++ K Sbjct: 300 NLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEAESYIDTGTEVITK 348 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/274 (35%), Positives = 156/274 (56%), Gaps = 9/274 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TI + + T +PF++SLKD +KEA L V + + K++++++D + ++ Sbjct: 40 TIGVSLLTQQHPFYLSLKDAIEKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAII 99 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK---K 144 I+P DS V AVK A ANIPVIT+D A +V +H+A+DN GGKIAG+ +A+ Sbjct: 100 ISPVDSKGVLAAVKKAEAANIPVITVDVPAIGVDVAAHVATDNYTGGKIAGEEMARLLNG 159 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTA 204 GE A VIE + + +R EGF++ +A + + + A R + L QN++ A Sbjct: 160 KGEVA-VIEYPTV---DSVVQRIEGFKEVIAKYPDIKIVAIQAGITRPEALTAAQNMIQA 215 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGK-LAATIAQLP 262 + ++ +F D+ AL A+ A+++AGK D + V+GFDG + AV K AA I Q P Sbjct: 216 NKNLGGIFGFGDDAALAAVAAVKSAGKEDQIKVIGFDGMQEARDAVTKEKSFAAVITQYP 275 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + +G V+T K+LKGE+V+ PV + K+ Sbjct: 276 EDMGKIAVDTTLKILKGEQVEKNIPVTPGIFTKE 309 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 155/269 (57%), Gaps = 4/269 (1%) Query: 15 LSATVSANA--MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKEL 72 SA +ANA K TI + + ++ F+V+ DG +K A GY LVVL++ N ++++ Sbjct: 14 CSADNAANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQV 73 Query: 73 ANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVL 132 VQ+L + ++ D+ A V A ANIPVI +D Q +G+V + I SD+V Sbjct: 74 NQVQNLVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAID-QRPQGDVTTFIGSDSVK 132 Query: 133 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 DY+AK+ G + ++G+ G+S ER +G + + V+++ AD+D Sbjct: 133 ASTELCDYLAKQMGGKGNLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADWDE 192 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 K NV Q++LTA+P++QA+FAQND MALGA +A AG+S++ +V DG P A+ Sbjct: 193 NKAYNVAQDVLTANPELQAIFAQNDGMALGAAKAAAQAGRSNLKIVSVDGFPQVYDAIES 252 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGE 280 G++ AT++Q P Q+G V TA K + GE Sbjct: 253 GQVLATMSQEPYQMGELAVRTAIKAMSGE 281 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 157/274 (57%), Gaps = 8/274 (2%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TI V + F + +G +K+A++LG +LV+LD+Q + ++ +++L + +++ Sbjct: 46 TIGCTVYYMT-EFVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLIAQKVDVII 104 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA-GDYIAKKAG 146 + DSDA+ A++M + A IP++ ++ E ++ D+VL G++ + I + G Sbjct: 105 VAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYHYVGPDDVLAGELEMQNAIDEIGG 164 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLL-T 203 EG VI L+G G SA +R EG Q + + K NVLA Q A++ R + L +++N L T Sbjct: 165 EGNVVI-LEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTANWSREEALTLVENWLET 223 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 + A+ A NDEMALGA++AL+ AG +D ++V G D DG AV DG L T+ Q Sbjct: 224 FSGKIDAIVAHNDEMALGAIQALEAAGLTDKIVVTGVDAILDGCNAVKDGTLLGTVYQDA 283 Query: 263 DQIGAKGVETADKVLKGEKVQAKYP-VDLKLVVK 295 G++ V+ A VL+G+ + + +D+K + K Sbjct: 284 GLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITK 317 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 163/284 (57%), Gaps = 16/284 (5%) Query: 3 MKKLATLVS--AVALSA-TVSANAMAKD---TIALVVSTLNN--PFFVSLKDGAQKEADK 54 M+K+ L++ A+ALS SANA K + ++VS L+ P FV L++ + EA Sbjct: 1 MRKVTYLMTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKT 60 Query: 55 LG-YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 LG ++ D Q + K++A+++ V+G ++I P D+ A+ ++ A + I V+T+ Sbjct: 61 LGNVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTI 120 Query: 114 DRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 DR EV++++A+DN++G + G+ + K +GA +I LQGI G A +R +G Sbjct: 121 DRPVNGVPEVIANVAADNLIGAQRQGEAVEKLFPQGATIINLQGIPGDKTANDRSKGVHD 180 Query: 173 AVAAHK--FNVLASQPADFDRIKGLNVMQNLLT--AHPDVQAVFAQNDEMALGALRALQT 228 + H + +A Q A F+R +GL+V +NLLT A+P + A ND+ ALGA +A++ Sbjct: 181 TLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPPT-VIVAGNDDSALGAAQAVEA 239 Query: 229 AG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 G K + + G+DG+ D KAV DG L T+ Q P + G + V+ Sbjct: 240 RGLKGKIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVK 283 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 161/294 (54%), Gaps = 9/294 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 A ++ A A + + N + + + + T + F+ L+ G ++EA K + + + Sbjct: 17 CALVLGACAQNGSEGGN---RPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAGE 73 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH 125 + A++ +++ TV+ +++ PTDS +G A+ ANQA+IPV T D +A +G VVSH Sbjct: 74 FDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKEGAVVSH 133 Query: 126 IASDNVLGGKIAGDYIAKKA-GEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLA 183 IASDNV GG++AG+Y AK+ G G I Q + ER GF++A+ + V+A Sbjct: 134 IASDNVAGGRLAGEYAAKRLNGRGQVAIIDQPY--IQSVIERVRGFEEALKPYPNIRVVA 191 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP 243 D R + L ++LL + + AVFA NDE A G + A++ AG+ + V+G+D + Sbjct: 192 RLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRKGIFVMGYDASE 251 Query: 244 DGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + K + GK L A IAQ P +IG + + L G+ V+ PV ++LV K Sbjct: 252 EARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVDK 305 >UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Proteobacteria RepID=A5FXE6_ACICJ Length = 328 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 138/256 (53%), Gaps = 2/256 (0%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TIA+ V +L+NPFFV+ + A +EA KLGY +V N +L ++ R ++ Sbjct: 42 TIAIFVPSLSNPFFVAEEKFAAEEATKLGYGTMVASHNGNAYTQLNLIKTAIARHVAAII 101 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIAGDYIAKKAG 146 ++ +D+ +AVK+A +A +PV +DR+ KG + I S+N G ++ G AK G Sbjct: 102 LDNAGADSSISAVKLATKAGVPVFLIDREINAKGIAKAQIVSNNFQGAQLEGTEFAKLMG 161 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAH 205 +EL G+ + A+ R +G + ++A Q AD+ + KG V Q LL AH Sbjct: 162 YKGTYVELTGLPSDTNAKVRSQGVASVLKHFSGMKMVAVQTADWSQSKGFQVTQTLLEAH 221 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 P ++ + A ND MA+GA AL A K +V+V GFDG+PD ++ G++ A + Q Sbjct: 222 PHIKGLIADNDTMAMGAEAALLAAHKPNVIVTGFDGSPDVINSIRKGQIKADVLQPIATF 281 Query: 266 GAKGVETADKVLKGEK 281 + V ADK ++ K Sbjct: 282 SREAVIEADKYIRTGK 297 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 149/267 (55%), Gaps = 7/267 (2%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 T+NNPFFV L +G +KE + G LV+LD+Q N K+ ++ DL ++ + +NP + + Sbjct: 48 TMNNPFFVDLGEGLKKELEANGDRLVILDAQFNSLKQKNDLSDLILQNVAGIFVNPVNWE 107 Query: 95 AVGNAVKMANQANIPVITLD---RQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKV 151 + ++ AN+ +P+I +D ++A + +V +ASDNV G++A +A K A++ Sbjct: 108 GLKGSLLEANRKKVPIIIVDAPVKKADEELIVCTVASDNVRAGELAAQALA-KVNPKARL 166 Query: 152 IELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQA 210 + L ++ A +R GF+ + H + +L Q A VM++L+ +PD+ A Sbjct: 167 VVLH-LSVNKACIDRVAGFKTELEKHPEMKILDVQEAQGTTEGARPVMRDLIGRYPDLDA 225 Query: 211 VFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKG 269 VFA ND ALG + AL +A K D V +V DG+ G KA+ GKL +T AQ P +IG Sbjct: 226 VFAINDPNALGVISALDSANKLDQVTIVTVDGSQAGIKAIQAGKLHSTSAQFPREIGKIA 285 Query: 270 VETADKVLKGEKVQAKYPVDLKLVVKQ 296 E LKGE V+ V ++L+ + Sbjct: 286 AEKMLAHLKGEPVEKDVKVRVELITAE 312 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/271 (31%), Positives = 145/271 (53%), Gaps = 9/271 (3%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP--AKELANVQDL 78 A + K + LV+ +L NPF++ ++ GA++ A++LG L+V N ++++ + + Sbjct: 30 ATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDEQ 89 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-------VSHIASDNV 131 G L+I P DS A+ + AN+ + ++ +D + + + ++ DN Sbjct: 90 LAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDNE 149 Query: 132 LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDR 191 GG AG +A+ AG AK + ++G ARER +G ++A+ + V+AS+ A + Sbjct: 150 FGGYEAGKILAELAGPDAKALIIEGPRSAINARERRDGARRALQENNIEVVASEVASWKL 209 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 + QN+ +P++ +FA ND MALGAL Q G +D ++ GFD PD AV + Sbjct: 210 ESAYALTQNVHARNPELNVIFAANDMMALGALLYAQEHGLNDWLIAGFDNIPDARAAVRE 269 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 G+LA TI Q D+ G +GV TA +L + V Sbjct: 270 GRLAVTIDQQADRQGYQGVATAVDLLNDKAV 300 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 11/286 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVLDSQNNPAKELA 73 S S N K +IA + +L+ PF+ +K G + +A G + V DS++N +LA Sbjct: 44 SGASSGNYKGK-SIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLA 102 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 NVQD ++I+PTDS + + A +A IPV+ D GE VS I++DN G Sbjct: 103 NVQDAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDIGTDSGEYVSFISTDNSGG 162 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG----EGFQQAVAAHKFNVLASQPADF 189 K G+Y+A K +G ++ ++ + AR+ G EGF++ + V Q Sbjct: 163 AKKLGEYVADKLNKGDEIAQI----ALNQARKNGVLRKEGFEEGIKEKLKEVDFRQMEKV 218 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV 249 +R +G+ Q+L+T++P+++ +F +++ ++GA+ AL+ +VGFD +P+ +A+ Sbjct: 219 NRDEGVRYTQDLITSYPNLKCIFCHSEDPSMGAVTALKEINNDKCKIVGFDCSPEVVEAI 278 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + AT AQ P +G V+ L G + + VD LV + Sbjct: 279 KSGDILATAAQQPVFMGRTAVDCLKTHLDGGTPEKEISVDTLLVTQ 324 >UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIT8_9CLOT Length = 338 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 4/261 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K T V T + FF L+ G +A +LG + D +N+ + + +L G Sbjct: 48 KLTFGWSVYTRDQTFFQQLEKGVVDKATELGIEIKTHDQKNDSNEMVTGCTNLINSGVDA 107 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK-- 143 L++ P +A+GN V +A+Q +IPVI D + + I SD GG++AG Y A+ Sbjct: 108 LIVCPCKPEAMGNIVTLAHQKDIPVIITDIGDGDSDKDAIIISDMKAGGQMAGVYTAELL 167 Query: 144 --KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNL 201 K+ +V ++ A+ R EG+++ + F V A+ + +G VM+++ Sbjct: 168 KEKSITSGEVAIIKCEESAVYAQRRNEGYKEEIEKAGFTVAKELVANSKQEEGYTVMKDI 227 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQL 261 L ++PD+ AVFA ND MA GA ALQ AGK+DV+V GF+G + + DGK+ T+AQ Sbjct: 228 LASNPDIVAVFAANDPMAAGAASALQEAGKTDVIVTGFNGDDIALEYIADGKMMGTVAQD 287 Query: 262 PDQIGAKGVETADKVLKGEKV 282 IGAKGVE A ++G+ + Sbjct: 288 VLGIGAKGVELAKLAVEGKDI 308 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 120/205 (58%), Gaps = 5/205 (2%) Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 +L+V +++ AK++++V+ L V+G K+L+I+ DS A+ +K A IPVITL+R + Sbjct: 63 DLIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLER-S 121 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 V H+ N G +AG YIA+ V+E++G + A ER EGF +A+A Sbjct: 122 LDIPVTLHVGPHNKPIGTLAGKYIAEALKGKGNVVEIKGDPAVAPAVERHEGFAEAIAGT 181 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAG--KSD 233 + V+A AD+D+ K L M++ L P +QAV+A ND MA GALRA+Q AG K Sbjct: 182 EIKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMAFGALRAIQAAGRDKEG 241 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATI 258 ++++G DG +AV G L AT Sbjct: 242 ILIIGIDGENAAIRAVAKGDLTATF 266 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 162/292 (55%), Gaps = 17/292 (5%) Query: 1 MNMKKLATLVSA-----VALSATVSANAMAKD---TIALVVSTLNNPFFVSLKDGAQKEA 52 MN K ++ L++A V + TV+ +A K I + L P+ V++ D A Sbjct: 1 MNKKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAA 60 Query: 53 DKLG-YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 +K + ++ D+ + +K++A++++ G +++ +P ++ + NAV A A IPVI Sbjct: 61 EKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVI 120 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK-AGEGAKVIELQGIAGTSAARERGEGF 170 LDR+ + I +DNV G+IAG+YIA +G KV E++G+ GTS +R GF Sbjct: 121 LLDRKIDGDKYTQFIGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGIDRDNGF 180 Query: 171 QQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 ++ + + K ++A AD+ R K + V + +L + ++ A ND MA GA A + A Sbjct: 181 REGIKKNDKIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFLALNDPMAEGAYIAAKNA 240 Query: 230 GKS-DVMVVGFDG--TPDGE-KAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 G+ D++ VGFDG TPDG ++V DG+L+ T Q+ G + +E+A ++L Sbjct: 241 GREGDILFVGFDGLPTPDGGIRSVMDGRLSMT--QVYPTGGTEAIESAYQLL 290 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 Q EA+K L+ D QN ++ V +G +++I P +S +K A +A I Sbjct: 68 QAEAEKRHVQLLFADGQNVHNNQVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGI 127 Query: 109 PVITLDRQATKGEVVSH--IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 PV+ R E + + +D V G+ AG+++AK+ A++IEL G A R Sbjct: 128 PVVLTSRGVDAEEDLYETVMVADFVWEGRRAGEWLAKQTNGKARIIELVGTPAADVAVMR 187 Query: 167 GEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALR 224 GF +A+A H ++ASQ DF R KG VM+ LL+AH ++ AV+A ND+MALGA++ Sbjct: 188 KTGFAEAIAKHPDMKIIASQSGDFTRTKGKTVMETLLSAHKGEINAVYAHNDDMALGAIQ 247 Query: 225 ALQTAG---KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK 281 A+Q AG D++V+ D +A+ +GKL AT+ P G +T DK+++GEK Sbjct: 248 AIQAAGLKPGQDILVISIDAVKPAFEAMMEGKLNATVECNPMH-GPLLFDTIDKIVRGEK 306 Query: 282 V 282 V Sbjct: 307 V 307 >UniRef50_Q3DJE8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=2 Tax=Streptococcus agalactiae RepID=Q3DJE8_STRAG Length = 213 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 + + +ST NNP+FV++KDG K A ++ V D+Q++ A++ +VQ+ + +LI Sbjct: 49 LGVSISTTNNPYFVAMKDGIDKYASNKKISIKVADAQDDAARQADDVQNFISQNVDAILI 108 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NP DS A+ A+K AN ANIPVI +DR + G+V++ +ASDNV GK+A DY KK G+ Sbjct: 109 NPVDSKAIVTAIKSANNANIPVILMDRGSEGGKVLTTVASDNVAAGKMAADYAVKKLGKK 168 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ 185 AK EL G+ G SA +RG+GF +VA K ++L++ Sbjct: 169 AKAFELSGVPGASATVDRGKGF-HSVAKSKLDILSAN 204 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/299 (31%), Positives = 155/299 (51%), Gaps = 7/299 (2%) Query: 3 MKKLATLVSAVALS-ATVS-ANAMAKDTIALVVSTL-NNPFFVSLKDGAQKEADKL--GY 57 MK ++ L A A+S AT+S +A A D + + + + FV + A EA K Sbjct: 1 MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAV 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + D+ N+ +K+L + + + +++ P D + V+ ANQA IPVI L Q+ Sbjct: 61 EVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQS 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 G+ + + S N+ G++ G+Y+ + +GAK++ L+G G S +ER +GF+ A+ Sbjct: 121 AGGKY-TFVGSKNIDAGRLQGEYMKEHLPKGAKILYLEGTPGLSHTQERKKGFEDALGRS 179 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 LAS A++DR +G+ V ++ + + P A+ A ND+MALGAL ALQ A + VM+ Sbjct: 180 DVTTLASLSANYDRAEGMKVTEDWIQSFPKFDAIVAANDQMALGALEALQGADRLKGVMI 239 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G DGT D A+ G ++ TI Q E + + KGE A+ V + K Sbjct: 240 SGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAEKLVPFASITK 298 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 2/258 (0%) Query: 23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRG 82 A + D IA++ +NPFF + GA+ +A +LGY +++ ++ K+ + RG Sbjct: 24 AFSADLIAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRG 83 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIAGDYI 141 K ++++ +DA AVK A A IP +DR+ G V+ I S+N G ++ Sbjct: 84 AKAIILDNAGADASVAAVKKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLGAQEF 143 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQN 200 K GE +EL G + A R +G+ + + +A Q A++ + + + M+ Sbjct: 144 VKLMGEKGNYVELVGKESDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYSKMET 203 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 +L A+PD++ V + ND MA+GA+ ALQ AG+ DV+VVGFDG+ D ++ G + AT+ Q Sbjct: 204 ILQANPDIKGVISGNDTMAMGAIAALQAAGRKDVIVVGFDGSNDVRDSIKSGGIKATVLQ 263 Query: 261 LPDQIGAKGVETADKVLK 278 VE AD +K Sbjct: 264 PAYAQAQLAVEQADAYIK 281 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 157/304 (51%), Gaps = 16/304 (5%) Query: 8 TLVSAVALSATVSANAMA-----KDTIALVVSTLNNPFFVSLKDGAQ----KEADKLGYN 58 T V +A T SA ++ K I LV+ +L+N FF ++ GA+ + A + + Sbjct: 29 TTVGLLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFT 88 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD---R 115 ++ + + A ++A+ + L ++++ P DS A+ V A +A I VI +D Sbjct: 89 ATGINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALD 148 Query: 116 QATK---GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 +ATK G ++ DN G K++G+ +AK G G KV L+G A +R GF Sbjct: 149 EATKKAAGIDLAFFGPDNRAGAKMSGEVLAKALGAGGKVAVLEGNPEADNAVQRRLGFDD 208 Query: 173 AVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 A+A N++ ++ ++ +G ++ L +PD+Q + ND MA GA++AL+ A Sbjct: 209 AIADGSLNLVVAESGHWETSEGQSITAAWLKKYPDLQGIMCANDSMAFGAVQALEAANLL 268 Query: 233 D-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 D + VVGFD P + + DGK+ AT+ Q Q+ A G++ + LKGEK +LK Sbjct: 269 DKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSGWIRTELK 328 Query: 292 LVVK 295 L+ K Sbjct: 329 LITK 332 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 147/264 (55%), Gaps = 4/264 (1%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 ++ N F V++ D KEA K G L+ +D++ + K++ V+ + +++NP + + Sbjct: 47 SMQNEFIVNVHDEMDKEAQKAGIELITVDAERSALKQVEQVESFIAQKVDAIIMNPCEVE 106 Query: 95 AVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 A AV A A IP+I ++ + T + + + SD+V +IA +IA K G V+ + Sbjct: 107 ASSPAVAKALAAKIPIINVNSE-TSSKPSAFVGSDDVESARIAMKFIADKLGGKGNVVMM 165 Query: 155 QGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAH-PDVQAVF 212 G G +A +R +G ++ + + +LA Q ++DR K +++M+N + ++ + AVF Sbjct: 166 HGYMGQAAQIKREQGAREILKQYPNLKLLAHQTGEWDRAKAMSLMENWIQSYGSQINAVF 225 Query: 213 AQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 A NDEM LGA++AL AG K V+VV D PD +AV G L AT+ Q +Q GAK + Sbjct: 226 AHNDEMGLGAVKALTDAGLKDKVIVVSIDAIPDALQAVKKGSLDATVFQNAEQQGAKAIA 285 Query: 272 TADKVLKGEKVQAKYPVDLKLVVK 295 TA K KG+ + V +LV K Sbjct: 286 TAIKAAKGQPFDKETLVPFQLVTK 309 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/295 (32%), Positives = 154/295 (52%), Gaps = 5/295 (1%) Query: 4 KKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD 63 + L L A+A + +SA AMA+ TIA + + N + + GA+K K G + L Sbjct: 5 RMLGRLTIAMATAGLMSA-AMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFIELA 63 Query: 64 SQNNP-AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 ++ +K+LA V+D+ R + I P DS + A+ A A I V+ +D + ++ Sbjct: 64 AEKGELSKQLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISGAKI 123 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL 182 S++A+DN+ + GD+ A++ +G VI + G G S +ER +GF + A + NV Sbjct: 124 TSYVATDNIKAAMVQGDWTAEQIKDGDTVIYVTGDQGQSTGQERKKGFLDGLNAKRKNVK 183 Query: 183 ASQPA-DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--SDVMVVGF 239 + A +D+ N ++ L A+P + + D ALGA AL AGK DV + GF Sbjct: 184 VVEVATTWDQTMAQNGVETALRANPTAKVIACAWDGGALGAKAALMAAGKKAGDVKIAGF 243 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 DG+P G + G +A AQ+ +IG GVETA +G+KV+A+ LV+ Sbjct: 244 DGSPGGLDMMKQGWQSANAAQMLAKIGQVGVETAIAAAEGKKVEARIDTGSFLVL 298 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 159/291 (54%), Gaps = 14/291 (4%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 N+ K + L+SA+ A A K IAL++ TL+N +F+S++ GA++ A + +L+V Sbjct: 8 NIFKFSALISAL----PALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIV 63 Query: 62 LDSQNNPAKE--LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ--- 116 ++ + E + V+++ + +++ P DS A A + A +A IP+I LD + Sbjct: 64 QVAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDA 123 Query: 117 ---ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 G +++ DN GG + +A+ G+ V L+GI G +R G +A Sbjct: 124 KAAEAAGLKFNYVGVDNFNGGYLEAKNLAEAIGKKGNVAILEGIPGVDNGEQRKGGALKA 183 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 A + ++ASQ A+++ + L V N+LTA+P++ +FA ND MA+GA+ A++ AG + Sbjct: 184 FAEYPDIKIVASQSANWETEQALTVTTNILTANPNINGIFAANDNMAIGAVTAVENAGLA 243 Query: 233 -DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 V+V G+DG P + V GK+ TI QLP + A +E A K + +++ Sbjct: 244 GKVLVSGYDGIPLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 143/275 (52%), Gaps = 11/275 (4%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD--SQNNPAKELANVQDLTVRGTKIL 86 IA+V NP++ +L+DGA E K G + V S+ + E A + L +G Sbjct: 22 IAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNCF 81 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQ----ATKGEVVSH---IASDNVLGGKIAGD 139 + P ++ V + Q IP++ LD Q A+K VS+ I SDN+ G+ AG+ Sbjct: 82 GVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAGE 141 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQ 199 + K G +V LQGIAG R +GF + VA K +++A+QPAD+D+ KG V + Sbjct: 142 GLLKLMGGKGEVAILQGIAGEQNGINRQKGFTEKVAG-KLDIVATQPADYDQAKGQTVTE 200 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATI 258 +L AHP + +FA ND M LGA +A++ AG V ++ DG +AV G L+ TI Sbjct: 201 AILKAHPKITGIFAANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAVKAGTLSGTI 260 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +Q P G V+ ++ +KV ++ + L+ Sbjct: 261 SQYPYAEGQLAVQACIDLVAKKKVPSRIVAPIALI 295 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 154/296 (52%), Gaps = 16/296 (5%) Query: 3 MKKLATLVSAVALSATVSA--NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG--YN 58 M +L T + A AT+ A AMA +++ TL NPF+ ++ G + A + G Y Sbjct: 1 MSRLKTTLKLGAAFATLLAVTPAMADGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYY 60 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + ++S +L + R ++ +S + +K A A I V+ LD Sbjct: 61 MQAVESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLD 120 Query: 119 KG-------EVVSHIASDNVLGGKIAGDYIAKKAGEGAK--VIELQGIAGTSAARERGEG 169 + E+ I SDNVL G +Y+ + G A V+ ++G++G ++R G Sbjct: 121 QAILDAEGIEITFRIGSDNVLAGAQGAEYVVSQLGADATGPVLVIEGLSGNITGQKRASG 180 Query: 170 FQQAVA--AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 F +A A ++AS P D+DR K N+ ++LT +P + A+FA ND MALGA+ ++ Sbjct: 181 FADKLAELAPGLEIVASLPGDWDRGKAANITNDILTRNPGLVAIFAANDGMALGAVESVF 240 Query: 228 TAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 AGK +V++VG DG D K++N+G+L A++AQLP +G + VE ++G +V Sbjct: 241 AAGKGGEVIIVGVDGNSDAVKSINEGRLTASVAQLPYLVGKQAVENVKIAVEGGEV 296 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 138/244 (56%), Gaps = 5/244 (2%) Query: 3 MKKLATLVSAVA--LSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 MKK L S +A L S + +A + IA++ + +NPFF + +GA +A +LGY+ Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDT 60 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 +V + K+ ++ R K ++++ D+DA +++ +A IP DR+ K Sbjct: 61 LVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREINK 120 Query: 120 -GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH- 177 G V+ I S+N G ++AG+ A+ G+G + +EL G + A+ R EGF + Sbjct: 121 TGIAVTQIVSNNFQGAQLAGEKFAELMGDGGEYVELLGPESDTNAQVRSEGFHDILDNFP 180 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 +F ++A Q A++ + + + M+++L A+P+++ V ND MALGA ALQ AG+ DV +V Sbjct: 181 EFKMVARQSANWSQTEAFSRMESILQANPNIKGVITGNDSMALGAEAALQAAGRKDVFIV 240 Query: 238 GFDG 241 GFDG Sbjct: 241 GFDG 244 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 153/287 (53%), Gaps = 7/287 (2%) Query: 1 MNMKKLATLVSAVALSATV---SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 M MK L++A+A+ + A+A K ++++V+ +NP++ + A++ A+KLGY Sbjct: 1 MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGY 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 V + + E + + ++++P ++D AV+ A +A IPV ++ + Sbjct: 61 EADVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEI 120 Query: 118 TK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 + G + + S+N G + K G+ A+ +EL+G + A R G++ ++ Sbjct: 121 NQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKGAPSDNNAATRSNGYETVLSQ 180 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDV 234 + + S A++DR +G N Q++L A+PD+ V + NDEMALGA+ AL+ AGK DV Sbjct: 181 YPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV 240 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADK-VLKGE 280 +V GFDG+PD +AV G++ T+ Q V ADK V GE Sbjct: 241 VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGE 287 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 151/283 (53%), Gaps = 6/283 (2%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT 79 S A A I + ++ +++ F ++ G ++ A K L D+Q + +++ VQ Sbjct: 16 SQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQGDVVRQINQVQGFL 75 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV---VSHIASDNVLGGKI 136 + +++ P D+ A N + A +A +P++ ++R + + V+ +AS+++ G++ Sbjct: 76 SQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPKGVTTVASNDIEAGQL 135 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGL 195 Y+A+K G + + G ++ +R EG +Q + + ++ Q A++ R KG+ Sbjct: 136 QMRYLAEKMGGKGTIALIMGDLAQNSTHDRSEGVKQVLKDYPGITIVEQQTAEWQRNKGM 195 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DVMVVGFDGTPDGEKAVNDGK 253 ++ N L A A+ A NDEMA+GA ALQ AGK+ +V +VG DG PDG A+ G Sbjct: 196 DLTSNWLLAGRTFDAIVANNDEMAIGAAMALQQAGKAKGEVAIVGIDGLPDGLAAIKRGM 255 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 LAA++ Q P +++A K++KGE V A+ V +L+ + Sbjct: 256 LAASVFQDPKAQATTALQSAIKMIKGEPVDAEVWVPFQLITPE 298 >UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGH9_9FIRM Length = 288 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 152/286 (53%), Gaps = 21/286 (7%) Query: 31 LVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKILL- 87 +V+ TL+NPF+V + DG Q EA+KLG ++ +D++ + +L +D G+ L Sbjct: 1 MVLKTLSNPFWVDMADGIQAEAEKLGVTADIFAVDAETDIDGQLKKCEDAINSGSYDGLG 60 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATK-------GEVVSHIASDNVLGGKIAGDY 140 + P + + +AV ANQ +PV+ +D + + G VV SDN G I Y Sbjct: 61 VAPITATNLISAVVAANQKGMPVVNIDAKIDEDALKEAGGYVVGFATSDNHKVGAIGAQY 120 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH---KFNVLASQPADFDRIKGLNV 197 I ++ +G KV ++G AG + R +G ++ + A K+ V+ QPAD+DR K L+V Sbjct: 121 IMEQLPDGGKVAIIEGRAGDLSGELRRDGCKETLEADGSGKYQVVDVQPADWDRQKALDV 180 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAA 256 N++T PD+ A F ND MALG ++A+ G + +++VG D + + ++A+ G + A Sbjct: 181 ATNIITKTPDLNAFFVANDTMALGVMQAIANTGNTGKILLVGTDASDETKEAIKAGNMVA 240 Query: 257 TIAQLPDQIGAKGVET-ADKVLKGEKVQAKYP-----VDLKLVVKQ 296 + Q P IGA ++ D + GE Y VD LV K+ Sbjct: 241 -VCQDPAAIGATCLDILVDAIKAGETGSPDYEAVSKLVDANLVTKE 285 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 139/256 (54%), Gaps = 4/256 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + + T + F+ ++ Q++A + +++D+ + K+LA VQD + +++ Sbjct: 56 IGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQKVDAIVL 115 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 PT S + AV +A +A IPV T+D +A +G+V SH+A+DN GGK+A Y A+K G Sbjct: 116 APTASAGIAPAVDLAKKAGIPVFTIDIKA-EGDVKSHVATDNYAGGKLAAKYAAEKVLNG 174 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 + + + + +R +GF+ A+A + V+ + K N+ Q++L PD Sbjct: 175 KGKVAIITYSEVQSCVDREKGFKDALAEYPNIKVVDVENCSGSAEKAANLTQDILLKFPD 234 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV-NDGKLAATIAQLPDQIG 266 + +FA D A+GA+ ++ AG+ +V V+GFDG P+ + + N G A + Q PDQIG Sbjct: 235 LDLIFAVGDPFAVGAVSTIKAAGR-NVKVIGFDGNPEAIQEIKNHGLWVADVVQHPDQIG 293 Query: 267 AKGVETADKVLKGEKV 282 K ++ G+ V Sbjct: 294 GKVIDLIADYFNGKSV 309 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 143/260 (55%), Gaps = 3/260 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGT 83 K T LVV + N+ ++++LKDGAQ+ D +G LV N+ +++ +++L Sbjct: 50 KLTFGLVVMSTNSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKV 109 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 +L+ P DSDA+ V+ A A IPVI +D + S IA+DNV GG++A + + + Sbjct: 110 DAILLTPLDSDALAAPVEKAMDAGIPVIVIDSAVNTDKYTSFIATDNVAGGRMAMERLIE 169 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLT 203 G +V+ + +AG + RG+G ++ A + Q D+ + + +N++ Sbjct: 170 SIGGSGEVVVVNALAGIPSNDARGQGAEEYAATVDGITVLPQQHCLDQAEAMTATENVII 229 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 +P+++ +FA + ALGA +A+ + GK+ ++ +V FD D K + DG + A + Q P Sbjct: 230 GNPNLKGIFATFNRGALGAAQAIVSKGKAGEIKMVAFDADADEIKLLEDGTIDALVVQQP 289 Query: 263 DQIGAKGVETADKVLKGEKV 282 ++G G+E A K L GE+V Sbjct: 290 YEMGKIGIEYAVKALNGEEV 309 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 153/289 (52%), Gaps = 14/289 (4%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQK-EADKLGYNLVVLDSQNNPAKELAN 74 +A S + K I + ++ + L+DG ++ E + ++ +D+ N+ +K+L+ Sbjct: 46 TAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQ 105 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR------QATKGEVVSHIAS 128 V++ + +++ P D+ + V ANQANIP++ ++R +AT +++ S Sbjct: 106 VENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDKAT-----AYVGS 160 Query: 129 DNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPA 187 +++ G + + +AK K+ + G G A +R EG +Q + + V+ A Sbjct: 161 ESIKAGIMQMEEVAKLLNGKGKIAIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLEGTA 220 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGE 246 ++DR KG+++M+N L + + AV NDEMA+GA+ AL+ GK DV+V G D TPD Sbjct: 221 EWDRAKGMSLMENWLQSGKKIDAVVCNNDEMAIGAIMALEDEGKLDDVIVAGVDATPDAL 280 Query: 247 KAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + V +GKL T+ Q G G+E A K KGEKV+ + +LV K Sbjct: 281 EYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEKFNWIPYELVTK 329 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 11/225 (4%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 + +NPF + D +A LG L+ ++ + + + ++D+ +G K+L++ P +SD Sbjct: 91 STSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLIVAPENSD 150 Query: 95 AVGNAVKMANQANIPVITLDRQAT---KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKV 151 +G A+ A IPV+T+DR T + ++ I S+ +IA D +A G AKV Sbjct: 151 GLGPALAEAKAKKIPVLTIDRTVTGTACSDFIAFIGSNFYGQAQIAADDLATATGSQAKV 210 Query: 152 IELQGIAGTSAARERGEGFQQAVAAHKFN--VLASQPADFDRIKGLNVMQNLLTAHPDVQ 209 L G G + +R GFQ V A N V+ASQ FD+ G +VM +L A+P + Sbjct: 211 AILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKFDQTDGQSVMAQMLQANPGIT 270 Query: 210 AVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVND 251 AV+A+NDEMALGA++A+ AGK D+ +V DGT ++AV D Sbjct: 271 AVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGT---QQAVQD 312 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 171/309 (55%), Gaps = 15/309 (4%) Query: 1 MNMKKLATLVSAVALSATV-------SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD 53 M K+LA + +V LSA V SA+ K IAL+V + ++ +++S+K GA+K A Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 54 KLGYNLVVLD--SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 + G N++ ++ + E+ V+D + +++ +D+ A+ V+ A A IP++ Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 T+D +V S IA+DN A D A+ G+ KV + + G S A +R +GF+ Sbjct: 121 TVDSGVDSDKVASFIATDNEKAASQAADVCAELIGKSGKVGVVNFVPGVSTAVQREKGFR 180 Query: 172 QAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ--- 227 ++ H +L +Q + D+ K + + +++LTA+PDV+A+FA N+ ALG +AL+ Sbjct: 181 DGMSKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVKAIFAANNRSALGVAQALKGKG 240 Query: 228 TAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 AGK V VV FD PD K + DG + A I Q P ++G +GV+ ++KGE V+ + Sbjct: 241 VAGK--VKVVAFDADPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGETVEKRID 298 Query: 288 VDLKLVVKQ 296 + +V K+ Sbjct: 299 TGVTIVTKE 307 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 9/297 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK L +V AL + S A +TI + ++ + F ++ KEA G ++ Sbjct: 1 MKYLKRIVLVAALGCSTSVLA---ETIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFE 57 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 D++ + ++ VQ+ G ++++P +S KM +A IP++ ++R ++ Sbjct: 58 DARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKL 117 Query: 123 ---VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-K 178 V + SD G + + +A+ A V + G + A +R + +Q VA + K Sbjct: 118 PAGVVFVGSDEKQSGTLQMEELARLANYQGNVAVMIGNLTDAGALQRTKDVEQVVAKYPK 177 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--SDVMV 236 V+ Q A++ R +G+++M N +T + V A NDEMA+GA+ ALQ AGK S V+V Sbjct: 178 MKVVQKQSANYSRSEGMDLMLNWITNGESIDIVAANNDEMAIGAIMALQQAGKQGSKVLV 237 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 G D TPDG KA++ GK+ T+ Q G V+ A +++KGEK+ Y + +LV Sbjct: 238 GGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLDPYYWIPFELV 294 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 143/265 (53%), Gaps = 6/265 (2%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TI + TL + FF+ + +G +++A +LG ++V D + AK+ + ++D + ++ Sbjct: 43 TIGVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNVDGMI 102 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 + TD+ A+ AV+ A + +PV+T+D + S++ + + GK G+Y K E Sbjct: 103 VLGTDNSAIVPAVEGAFE-KMPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKKYIDE 161 Query: 148 ---GAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLT 203 G I + + +R +GF+ A+ + +L SQP +DR + LN ++NL+ Sbjct: 162 KLGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSANVKILNSQPG-YDREESLNTVENLIQ 220 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 ++PDV ++A + LGA AL++A DV +VGFD T + + DG + A I Q P Sbjct: 221 SNPDVDIIYATAENSVLGAKAALESAKNKDVKIVGFDLTEEASSGITDGTILAMIQQQPK 280 Query: 264 QIGAKGVETADKVLKGEKVQAKYPV 288 ++G VE K +KGEKV+ PV Sbjct: 281 EMGRLAVEAVVKAIKGEKVEKNIPV 305 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 13/296 (4%) Query: 7 ATLVSAVALSATVSANAMAKDT-----IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 AT+V+ L + + KDT T+NNP+FV++ + ++ G L+ Sbjct: 4 ATIVACTTLFIAIGIHE-KKDTRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILIT 62 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 D + K+ ++D+ G +L + P D + V A+++ + +IPV +D + + E Sbjct: 63 RDPLQDQKKQNEQIKDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTE 122 Query: 122 -VVSHIASDNVLGG-KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-K 178 VVS I SDN G + A D + KK ++ + + ++ ER +GF+ + H + Sbjct: 123 AVVSTIVSDNYDAGVQCAKDMMKKKTSANIIIVNQKAL---NSINERVKGFRDTIKGHPQ 179 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVV 237 + ++ + + + + VM+ ++ + V ND +ALG + A+Q K+D VMV Sbjct: 180 YKIVEEKESAAEFEIAMKVMEKIIYEKKNYDVVMGGNDPIALGCIAAMQMTDKTDQVMVY 239 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 G DG+PDG+ + G L T AQ P +IG K V+TA L GE V+ + ++L+ Sbjct: 240 GVDGSPDGKAMIKAGFLEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVTIPVELI 295 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 142/257 (55%), Gaps = 10/257 (3%) Query: 36 LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDA 95 ++ + V+ D QKEA+ GY V+ +++ + AK++++V+DL + L I P D +A Sbjct: 80 IDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFLFIAPIDMEA 139 Query: 96 VGNAVKMANQANIPVITLDRQA--TKG-EVVSHIASDNVLGGKIAGDYIAKKAG-EGAKV 151 + A++ A +P I LDR+A T G + + I S+ + G+ D++++ G + K+ Sbjct: 140 IMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYIWQGEACADWLSENGGADSYKI 199 Query: 152 IELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLL-TAHPDVQ 209 +++ G G S R+R GF+ V ++ ++A+Q ++ R + VMQN++ + D Sbjct: 200 VQITGKVGGSDVRDRQAGFETGVKKYENMEIVATQSGEWSRTEAQKVMQNIIQSTGGDFN 259 Query: 210 AVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIG 266 V+ NDEMALG + AL+ AG +DV V+ DG + +A+ G++ IA + G Sbjct: 260 VVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAIIAGEMNC-IATCNPRFG 318 Query: 267 AKGVETADKVLKGEKVQ 283 +T +K L EK++ Sbjct: 319 PVAFDTMEKYLNEEKLE 335 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 149/281 (53%), Gaps = 10/281 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV-LDSQNNPAKE-LANVQDLTVRG 82 +K TI TLNN + + + + Q+ + LG + SQ+ +E L +++ +G Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQ------ATKGEVVSHIASDNVLGGKI 136 +++ P S+ + +A++ ANIPVI LD + T G+ + +DN +GG++ Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 196 G+ +A+ +G K L+G+ G + +R GF A +++A Q A+++ +G Sbjct: 199 VGEEVAQMYPDGCKTAILRGVQGQTNDDDRYNGFLDK-AGDVVDLVAEQHANWETDQGYT 257 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLA 255 +QN++ A+ D+Q ++ +ND M +GA +A+ AG +D + + +DG +G + V DGK Sbjct: 258 AIQNIIQANKDLQVIYCENDLMGIGAYQAVDEAGLTDQIKIFSYDGVTEGLQYVVDGKFV 317 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +T AQ P ++G GV K+ G+ ++ +L+ + Sbjct: 318 STCAQQPIKMGKLGVANMAKIFAGKDAESYIDTGCELITSE 358 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 154/293 (52%), Gaps = 5/293 (1%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 L + ++A +S A A + IA++ + +NPFF + +GA+ +A +LGY +V Sbjct: 6 LKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTLVASHD 65 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVS 124 ++ K+ ++ R K ++++ SDA +K A A IP +DR+ + G VS Sbjct: 66 DDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREINETGIAVS 125 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLA 183 I S+N G ++ + G K IEL G + A R +G+ + H ++A Sbjct: 126 QIVSNNYQGAQLGAEKFVTLMGGKGKYIELLGRESDTNAHVRSQGYHDVIDEHSDMKMVA 185 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP 243 Q A++ + + N M+++L A+PD+ V + ND MALGA AL+ AG++DV+VVGFDG+ Sbjct: 186 QQTANWSQTEAFNRMESILQANPDITGVISGNDTMALGAEAALKAAGRNDVVVVGFDGSD 245 Query: 244 D-GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK--VQAKYPVDLKLV 293 + +N+G + AT+ Q V AD+ LK K ++ K +D L+ Sbjct: 246 YVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKTGKTGLEEKQLMDCVLI 298 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/270 (34%), Positives = 142/270 (52%), Gaps = 2/270 (0%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TI L V+ L FF +K + E G ++ +D+Q N + +++ ++DL R L+ Sbjct: 30 TIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLITRQIDALI 89 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 P + A G VK A A IPVI +DR A + IASD+V G K +Y+ K Sbjct: 90 YIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTFIASDSVAGAKALAEYVGKVTDG 149 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP 206 ++ LQG GT+ +R +GFQ+ + V+A QPA++ + KG V Q+LL P Sbjct: 150 KGRIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKGFAVAQDLLQRDP 209 Query: 207 DVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 ++ F + D MALGA +A++ A S V+VVGFDG G KAV G L AT+ Q ++ Sbjct: 210 NITVFFGRADAMALGAAQAVKVANLSQPVVVVGFDGDVAGLKAVASGVLQATMTQQTQKM 269 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G V +A + G+ V + ++ L K Sbjct: 270 GRMAVASALDLKAGKAVPKEQLLETVLTTK 299 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 149/275 (54%), Gaps = 10/275 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGTKIL 86 IALV+ TL NPFF+ ++ GA++ +LG +L+V + + + +++ ++DL + Sbjct: 51 IALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLIRMKFDAI 110 Query: 87 LINPTDSDAVGNAVKMANQANIPVIT----LDRQATKGE---VVSHIASDNVLGGKIAGD 139 +I P DS + +K A +A I +I LD +A KG+ V I+ DN + Sbjct: 111 VIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEKAAYESAG 170 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF-NVLASQPADFDRIKGLNVM 198 +IA++ + A+ L+GI +R+R G ++A + ++A + A++ +G +V Sbjct: 171 FIAREIHKPAQAAILEGIRSADNSRQRRVGAERAFRENPLIRLVARESANWKIDEGRDVT 230 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 + L + HPD+ +F ND MALGA++ LQ +G+ V V +D + ++A+ G++ T+ Sbjct: 231 RRLFSDHPDITLLFCANDMMALGAIQFLQESGRYGVKVAAYDALEEAKRAILSGRMEVTV 290 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 Q + G +G+ A +VL GE V V+ LV Sbjct: 291 NQQAAEQGYQGIILASRVLNGEAVPEVVLVETSLV 325 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 92/269 (34%), Positives = 141/269 (52%), Gaps = 7/269 (2%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 + +A+A K TI ++V++L+NP++ S GA ++A LGY VL S K+ + D Sbjct: 17 SFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVL-SHGEDVKKQNELID 75 Query: 78 LTVRGTKI--LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGG 134 + G K+ ++++ DS A A++ A +A IPV+ ++R+ +V + I +N G Sbjct: 76 TAI-GKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDDVALEQITHNNFQAG 134 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV-LASQPADFDRIK 193 + +K E K EL + R + F Q + + V +A Q A I Sbjct: 135 SEVANVFVEKMAEKGKYAELTCNLADNNCVTRSKSFHQVIDQYPDMVSVAKQDAKGTLID 194 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK 253 G +M ++L AHPDV+ V N +ALGA+ AL+ A +SDV+VVG DG+ D AV G Sbjct: 195 GKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGIDGSNDERDAVKAGT 254 Query: 254 LAATIAQLPDQIGAKGVETADKVL-KGEK 281 L AT+ I A+GV D L KGEK Sbjct: 255 LQATVMLQAQAIAAQGVTDLDNYLQKGEK 283 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 150/284 (52%), Gaps = 8/284 (2%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQK----EADKLGYNLVVLDSQNNPAKELANV 75 +A+ K IA +V +L + FF+++ + A+K ADK+ ++ + N +++ V Sbjct: 47 TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNV-LGG 134 + ++I P DS+ + A+K AN A I V+T + +A G++VS++ + N +G Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDIVSYVGAQNFDVGY 166 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIK 193 +A K G+G KVI ++G AG S + ER EGF++A+ + +LASQPAD+DR Sbjct: 167 SLATALFEKLGGQG-KVILIEGKAGNSTSEERAEGFKEALKEYPGIELLASQPADWDRAS 225 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDG 252 + VM+N L + + V +M LG + A+++AG+ +++ + FD D A+ G Sbjct: 226 AMTVMENCLQTYDQIDGVLTLTKDMGLGTIEAIKSAGRDKEIVSMTFDVDDDVISALKAG 285 Query: 253 KLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 L A+ Q + TA L G KV + + + +V + Sbjct: 286 DLYASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIMPITVVTAE 329 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 11/230 (4%) Query: 48 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAN 107 A+ EA+K G L + D Q ++ V+ +G + I P + +K A A Sbjct: 45 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104 Query: 108 IPVITLDRQ---ATKGEVVSHIASDNVLGGKIAGDYIAKKA-GEGAKVIELQGIAGTSAA 163 IPV LDR K ++ + +DN+L GK+ GD++ K+ G+ V+ELQG G S A Sbjct: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164 Query: 164 RERGEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAH---PDVQAVFAQNDEMA 219 +R +GF +A+ A ++ SQ DF R KG VM++ + A ++ V+A ND+M Sbjct: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224 Query: 220 LGALRALQTAG---KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIG 266 +GA++A++ AG D++ DG PD KA+ DG+ A++ P+ G Sbjct: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274 >UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=C6C3I7_DICDC Length = 311 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 8/285 (2%) Query: 3 MKKLATLVSAVALSA-TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 MK + L++A SA +++A+A K TI ++V++L+NP++ S GA K+A +LGY V Sbjct: 1 MKLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTV 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKI--LLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 L S K+ + + D + G K+ ++++ DS A A+K A A IPV+ ++R+ Sbjct: 61 L-SHGEDVKKQSELIDAAI-GKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREIPV 118 Query: 120 GEV-VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 +V + I +N G + +K GE K EL + R + F Q + + Sbjct: 119 DDVALVQITHNNFQAGSDVANVFVEKMGEKGKYAELTCSLADNNCVTRSKSFHQVLDQYP 178 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 +A Q A I G +M ++L AHPDV+ V N +ALGA+ AL+ AG++DV+VV Sbjct: 179 GMASIARQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAAGRNDVVVV 238 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL-KGEK 281 G DG+ D AV +G L AT+ I A+GV D + KG K Sbjct: 239 GIDGSNDERDAVKEGSLKATVMLQAQAIAAQGVTDLDNFIQKGAK 283 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 141/272 (51%), Gaps = 16/272 (5%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 I + +S L+ F ++D ++EA + + D+QN+ +++A V++ R ++ Sbjct: 45 IGVSISNLD-EFLTYMQDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAII 103 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDR------QATKGEVVSHIASDNVLGGKIAGDYI 141 +NP D+ + + V M N A IP+I +R QAT + + S+++ G + + + Sbjct: 104 VNPVDTTSAVDIVNMVNDAGIPIIIANRTFDGVDQAT-----AFVGSESIQSGLLQMEEV 158 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQN 200 AK + + G G A R EG +Q + H V+ A FDR +G+ +M+N Sbjct: 159 AKLLNNEGNIAIMDGELGHEAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMEN 218 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIA 259 L + ++ AV A NDEMALGA+ AL+ GK DV+V G D TP +A+ +GKL T+ Sbjct: 219 WLNSGTEIDAVVANNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVF 278 Query: 260 QLPDQIGAKGVETADKVLKGEKVQ-AKYPVDL 290 Q GA V+ A + GE V+ A P +L Sbjct: 279 QDAKGQGATSVKVAVQAANGEDVEDAMIPYEL 310 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 8/287 (2%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 +AT S A I +VV L +P + D +K AD+ G L + DS+ + EL V Sbjct: 29 NATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKKDVGSELNQV 88 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV---SHIASDNVL 132 +DL R +++ P D DA NA K ANIP+ L + +G V S+I D+ + Sbjct: 89 EDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYKSYIGVDDTV 148 Query: 133 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRI 192 G++ +Y+ K G ++ G+ G S R GF + + F ++A A R Sbjct: 149 AGQMQAEYLNKLMPNGGNLVFAAGVYGASWTDRRKNGFDKTI-NENFKIVAEFQAKGSRD 207 Query: 193 KGLNVMQNLLTAHPD--VQAVFAQNDEMALGALRALQTAGKSDVM--VVGFDGTPDGEKA 248 M++ L P + AV A NDEMA+GA A+ AG++ VVG DGT + Sbjct: 208 DAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAGRTAEFKAVVGVDGTEPALQD 267 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + G ++AT+ Q G K VE L G V +Y + L+ K Sbjct: 268 IEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYTLPFTLITK 314 >UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83 Tax=Proteobacteria RepID=B2JDH5_BURP8 Length = 321 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 149/274 (54%), Gaps = 14/274 (5%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + LNNP+FV+++ A +G +VV D+ ++ +K++++V+D+ + ILL+ Sbjct: 47 IGMTFQELNNPYFVTMQKALNDAAASIGATVVVTDAHHDVSKQVSDVEDMLQKKIDILLV 106 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NPTDS + +AV + + V+ G V S + S N G+++ +Y+AK G Sbjct: 107 NPTDSTGIQSAV-TSAKKAGAVVVAVDANANGPVDSFVGSKNFDAGQMSCEYLAKAIGGS 165 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKF---NVLASQPADFDRIKGLNVMQNLLTAH 205 +V L GI ER G + A+A KF V+ +Q +R L+V +N++ AH Sbjct: 166 GEVAILDGIP-VVPILERVRGCKAALA--KFPNVKVVDTQNGKQERATALSVTENMIQAH 222 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN--DGKLAATIAQLP- 262 P+++ +F+ ND ++GAL A++++GK D+ + DG P+ A+ + K T AQ P Sbjct: 223 PNLKGIFSVNDGGSMGALSAIESSGK-DIKLTSVDGAPEAITAIQKPNSKFIETSAQFPR 281 Query: 263 DQIG-AKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DQI A GV A K G V PVD+KLV K Sbjct: 282 DQIRLAIGVALAKKW--GANVPKTIPVDVKLVDK 313 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 146/260 (56%), Gaps = 6/260 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M+ KL +V AL AT SA A A +TIA+ NP+F +++ GA+ A +G +V Sbjct: 1 MSKLKLFGVVLPAALLAT-SAFA-ADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVV 58 Query: 61 --VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + ++ ++L+ ++D+ V+ ++ P D A+ V+ N A IPV+ + ++ Sbjct: 59 HYIPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDRSA 118 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 G+ ++ + +D+ G G Y+ K+ G V+ L+G+ G+ +R GF A+ K Sbjct: 119 GGKFLAFVGADDYSLGLETGRYLLKEMGGKGNVVILEGVKGSLTNVDRVRGFNDALKEFK 178 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 +LASQPA++ R++GL VM+NL+ +HP + V A ND MA+GA+ AL A + VV Sbjct: 179 DVKLLASQPANYQRLQGLQVMENLMQSHPQIDGVLAANDAMAIGAIEALDGANRK-AKVV 237 Query: 238 GFDGTPDGEKAVNDGKLAAT 257 G +GT + A+ GKL A+ Sbjct: 238 GINGTKEAVDAIKSGKLLAS 257 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 10/280 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGT 83 K TIALV+ TL NPFF ++ GA++ LG NL+V + + + +++ V DL Sbjct: 53 KHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELKV 112 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDR---QATKGEV----VSHIASDNVLGGKI 136 L+I P DS + +K A I VI +D Q +V V I+ DN L Sbjct: 113 DALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAAYK 172 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL-ASQPADFDRIKGL 195 + + +K + +V ++GI G A R G +A + KF L A++ A++ + Sbjct: 173 STKVLTEKLTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAF 232 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 + L +P++ A+F ND MALG + LQ+ GK +V VV FD P AV G L Sbjct: 233 ELAAKLYNKNPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLL 292 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 AT+ Q + G +G+ +A+ +L G+K K ++ K++ K Sbjct: 293 ATVDQDAAEQGYQGILSANNILSGKKTPLKITIEAKIITK 332 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 156/296 (52%), Gaps = 5/296 (1%) Query: 5 KLATLVSAVALSATVSANAMAKDT-IALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVL 62 KL L+ L + A+ +AKD I + ++ ++ F L+ Q + + G + Sbjct: 2 KLKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQFE 61 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR--QATKG 120 D++ + A+++ +++ +G +++NP D+ V +K+A A IP++ ++R + T Sbjct: 62 DAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVTLP 121 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 ++++ SD+ L GK+ + +AK V+ L G A R+R G ++ A + Sbjct: 122 AGMAYVGSDSKLAGKLQMEELAKLMNGKGNVMILMGELSNEATRDRTRGVEEVAAKYPGI 181 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239 +L Q A + R + +++ + + A+ + NDEMA+GA+ AL+ A KS V+V G Sbjct: 182 KILDKQTAKWGRKEAVDITTDWALTGQQIDAIASNNDEMAIGAILALKQAKKSGVLVAGV 241 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DGTPD + + G LA ++ Q G V+TA +++KGEKV++ + +L+ K Sbjct: 242 DGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEKVESNVLIPYQLITK 297 >UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7 Tax=Burkholderia RepID=B2SY92_BURPP Length = 317 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 148/272 (54%), Gaps = 10/272 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + LNNP+FV+++ A +G +VV D+ ++ +K++++V+D+ + ILL+ Sbjct: 43 IGMTFQELNNPYFVTMQKALNDAAASIGATVVVTDAHHDVSKQVSDVEDMLQKKIDILLV 102 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NPTDS + +AV + + V+ G V S + S N G++A +Y+AK G Sbjct: 103 NPTDSTGIQSAV-TSAKKAGVVVVAVDANANGPVDSFVGSKNYDAGEMACEYLAKSIGGS 161 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 +V L GI ER G + A+A A ++ +Q +R L+V +N++ AHP+ Sbjct: 162 GEVAILDGIP-VVPILERVRGCKAALAKAPGVKLVDTQNGKQERATALSVTENMIQAHPN 220 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN--DGKLAATIAQLP-DQ 264 ++ VF+ ND ++GAL A++++GK D+ + DG P+ A+ + K T AQ P DQ Sbjct: 221 LKGVFSVNDGGSMGALSAIESSGK-DIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQ 279 Query: 265 IG-AKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + A G+ A K G V PVD+K++ K Sbjct: 280 VRIALGIALAKKW--GANVPKTIPVDVKMIDK 309 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 153/300 (51%), Gaps = 11/300 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKKLA V A A+ A A A K I + ++ ++ F +L++G + A ++ + Sbjct: 1 MKKLALSVLASAMFAGSVAAADLK--IGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIE 58 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 D +N +L +Q+ G +++NP D+DA + A A IP+I ++RQ Sbjct: 59 DGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQ 118 Query: 123 V----SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + + +AS+ + G + + + + G V+ + G AA +R + + + Sbjct: 119 LPDNQAFVASNEEVSGTLQTEEVCRLLGGKGNVVVMMGELSNQAAIQRTKDIHDVIKRKE 178 Query: 179 FN---VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--SD 233 + V+A Q A++ R+KG ++M N L+A + AV + NDEMA+GA++AL+ +G+ Sbjct: 179 CSGMKVVAEQTAEWSRLKGNDLMTNWLSAGLEFDAVISNNDEMAIGAIQALKASGRKMDS 238 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 V+V G D TPD A+ G L T+ Q GA V+ A ++ KGE V K V +LV Sbjct: 239 VVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKVWVPFELV 298 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 115/204 (56%), Gaps = 3/204 (1%) Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + + +NP+ ++ NV+DL +G +++ P +SDA+ +A IP++ +DR+ T Sbjct: 66 IFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDRELTND 125 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + DN G AG+Y ++ G KV+E+ G S ++R +GF++A+ Sbjct: 126 AATVVVKGDNYGAGVNAGEYFMEQLGGNGKVVEIAG-PSNSVTQQRSDGFREAIEGSDIE 184 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV-MVVGF 239 ++ASQ +F L VM+N+LT+ P++ AV+ Q+D MALG L+A+ A ++D+ + G Sbjct: 185 IVASQSGEFSTETSLQVMENILTSQPEIDAVYTQDDGMALGVLQAINEANRTDIQFITGV 244 Query: 240 DGTPD-GEKAVNDGKLAATIAQLP 262 G+ D E ++DG + AT P Sbjct: 245 AGSKDVYEIIMDDGLITATFLYSP 268 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/273 (30%), Positives = 146/273 (53%), Gaps = 9/273 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKI 85 TIA++ + F V + GA+K+A +LG N+ V+ D + KE+A ++DL +G Sbjct: 55 TIAVLAWSQAEEFGVDIISGAEKKAAELG-NVTVVKPDPAGDMQKEIAILEDLIQQGVDA 113 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 + + P D++A+ + +A I ++ D T+ + + + SDN GG +A DY+ ++ Sbjct: 114 ICVAPVDANAIVPYIDKVREAGIVLVDYDID-TEAQCDAKVLSDNAAGGAMAADYLVQEM 172 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV-LASQPADFDRIKGLNVMQNLLTA 204 G KV+ L + G + A ER GF+ +A NV + Q ++ R +N+L A Sbjct: 173 GTEGKVLILTEVPGVTTAEERIAGFKDRMAEIAPNVEMVEQLSNGTRDTHRATTENMLQA 232 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV-NDG---KLAATIAQ 260 HPD+ +F + +LGA A +T + DV++ G+D TP+ + NDG L ++A Sbjct: 233 HPDITGIFCFMGDNSLGAYTACKTNNRQDVLIAGYDATPEQLDIMKNDGPDCNLICSVAL 292 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 P +IG +ETA +L+GE++ +L L+ Sbjct: 293 YPKKIGYVALETAYNILEGEEINDVVWTELGLL 325 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 10/254 (3%) Query: 39 PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGN 98 P++V+L+D ++ + G D Q + AK++A ++DL +G ++L++NP D AV Sbjct: 64 PYYVALEDVVKRSVQRYGMQYYTADGQEDVAKQVAAIEDLLSKGIQVLVLNPLDPKAVVP 123 Query: 99 AVKMANQANIPVITLDRQA-TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGI 157 V A + V +D K S + ++N L G++ G ++A+ E K+ + G Sbjct: 124 VVNRAIAEGVVVFIVDSMIDEKAAYTSSVVANNTLNGELLGLWLAETKNEALKIAIISGN 183 Query: 158 AGTSAARERGEGFQQAV--------AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQ 209 G RE+ GF + + A F+++A ++ GL M+++L AHP V Sbjct: 184 QGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNNGGLKAMEDILAAHPYVN 243 Query: 210 AVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAK 268 + A+ND MALGA + ++ GK + + ++GFDG + + GK AT P +G Sbjct: 244 VLLAENDAMALGAYKIIKQMGKENQITILGFDGQKEAFDMLKTGKFEATAQNSPKILGET 303 Query: 269 GVETADKVLKGEKV 282 +E + L GEKV Sbjct: 304 IIELVARHLNGEKV 317 >UniRef50_Q4A8D1 Periplasmic sugar-binding protein n=3 Tax=Mycoplasma hyopneumoniae RepID=Q4A8D1_MYCH7 Length = 401 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 150/304 (49%), Gaps = 46/304 (15%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 +A+V ST NNPFF +++ G + A +LG + V DS+N+ KE N+ ++ + K+++ Sbjct: 42 VAVVFSTRNNPFFQNVEKGIETAAKELGVDYEVYDSENDSDKEARNISNIIAKQQKVVIF 101 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDR-------QATKGEVVSHIASDNVLGGKIAGDYI 141 N + D+ +AVK NQA IPVI D K +V ++IASDN G I ++ Sbjct: 102 NDVNEDSGISAVKKLNQAGIPVIATDHLLNSPKALEAKIKVEANIASDNKQAGVILAQFM 161 Query: 142 AKKAG--EGAKVIELQGIAGTSAARERGEGFQQAVA-----AHKFNVLA----------- 183 A+K G + + + GI GT + R +GF + V A K+N+ + Sbjct: 162 AQKIGLPQDSLTYSVYGIPGTESGESRAQGFIETVKNLNNQAIKYNLFSYGKYGKENANG 221 Query: 184 ----SQPADFDR-IKGLNVMQNLLTAHPDVQA----VFAQNDEMALGALRALQTA----- 229 + AD +R + V + D Q VF NDE ALG++ AL++A Sbjct: 222 KTYIGRQADDNRDLANQRVANDATQVFQDAQKRPLLVFGTNDEAALGSISALESAQIPLG 281 Query: 230 -------GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 G V + G D T D +KAV + KL+AT+ Q D +G + A+K+LK + Sbjct: 282 GGDKFLPGSGKVYITGVDYTNDAQKAVLNNKLSATVEQDTDLLGRLSLIIAEKILKDQWK 341 Query: 283 QAKY 286 +KY Sbjct: 342 TSKY 345 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 13/286 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK+ + + L+ TVS AK T+ + + + + + + EA+K G +L + Sbjct: 1 MKRSLLVAAFALLACTVS---QAKLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFV 57 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ--ATKG 120 D+Q+N ++ ++ +++ P ++ A A IPVI +DR+ A Sbjct: 58 DAQSNVDNQMKALRSFIADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKIVADPS 117 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-- 178 + I SD G++A ++I A + K++ELQG G+SAA ER F +A H Sbjct: 118 LYATFIGSDFFKEGQMAAEWILAHADQKRKIVELQGEPGSSAANERQRAFASTMATHTSD 177 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAH-PDVQAVFAQNDEMALGALRALQTAGKS---D 233 F ++A + A+F R +G M LLT H D++ VFA ND+MALGA+ A++ G+S D Sbjct: 178 GFRIVARKVANFRRDQGRQAMAELLTTHGSDIEIVFAHNDDMALGAIEAIEAVGRSPGRD 237 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG 279 +MVV D +AV GKL T+ P G K +E ++ G Sbjct: 238 IMVVSIDAIKTAVEAVASGKLNCTVECNP-LFGPKVIEAVVRLTSG 282 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 147/283 (51%), Gaps = 16/283 (5%) Query: 30 ALVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKILL 87 A+++ T F+V + G + E G +L S+++ +L ++ +G + Sbjct: 68 AVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQGYDGIA 127 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATK-------GEVVSHIASDNVLGGKIAGDY 140 I P V + A I ++ +D + + G V+ +A+DNV G Y Sbjct: 128 IAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGAKGAQY 187 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQN 200 I AGEGAKV ++G +G ++ +R +G +QA K ++++SQ AD+DR K +++ Sbjct: 188 IVDTAGEGAKVAIIEGKSGNQSSEDRTQGAKQAFTDGKMDIISSQAADWDRQKAMDIAST 247 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIA 259 L+ +PD++ ++ ND MALGA++A+ A K ++M+VG DG + ++ + +L+AT+A Sbjct: 248 LIQQNPDLKGIYCCNDGMALGAVQAVINANKLGEIMIVGTDGDAEAVSSIANNELSATVA 307 Query: 260 QLPDQIGAKG----VETADKVLKGE--KVQAKYPVDLKLVVKQ 296 Q P QIGA +E + KGE K PV+ LV + Sbjct: 308 QDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTAE 350 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 8/253 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN--NPAKELANVQDLTVRGTKI 85 ++ V TLNNP+++S+ D AQ+ AD LG +L + Q + K+++ ++ + Sbjct: 50 SVYWVGKTLNNPWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADA 109 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKK 144 ++++ SD V A+K A +A I ++ D + + V+ + + D+V G AG YI ++ Sbjct: 110 IVVSAASSDGVIPAIKKAREAGIKIVNFDTRISDTSVIDAFVGGDDVAGAYKAGKYICEQ 169 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLT 203 G +V + G+ S +R GF QA A + V+A Q A++ K +V N+LT Sbjct: 170 LGGEGEVAIITGLMEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTTNILT 229 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKS--DVMVVGFDGTPDGEKAVNDGKLAATIAQL 261 A+P+V+A+FA ND+MA+G + A + AGK D+++VG+DG D DG L A ++ L Sbjct: 230 ANPNVKAIFACNDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMTMDGDLDAFVS-L 288 Query: 262 PD-QIGAKGVETA 273 P+ GA GV+ A Sbjct: 289 PNLDEGAMGVKLA 301 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 145/279 (51%), Gaps = 7/279 (2%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVLDSQNNPAKELANVQDL 78 + A+A + + V +N + L Q+ A ++ G L V DS ++ ++L V+ Sbjct: 27 STALADLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVEDSGSDVVRQLGQVESF 85 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV---VSHIASDNVLGGK 135 + +++NP D+ A G + A +A IP++ L+ + E V + +D G+ Sbjct: 86 IAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREFPAGVVFVGTDERRLGQ 145 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKG 194 + +Y+A+K G + L G R+R G + +A + + V+ Q D+ R KG Sbjct: 146 MQMEYLAEKMGGKGDLAILLGRLAHDDTRKRTAGVKDVLARYPQIRVVEEQSGDWQRDKG 205 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKL 254 L++ N L++ + AV A NDEM +GA AL+ AG+ +V V G DGTPDG A+ G+L Sbjct: 206 LDLTNNWLSSGREFDAVVANNDEMGIGAAMALRQAGRREVSVGGIDGTPDGLAAIARGQL 265 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 A T+ + P +G + V+ A ++++ + VQ + + L+ Sbjct: 266 AVTLLRDPVAMGEEAVDVALRLVRKDVVQGDVWIPVHLI 304 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 14/267 (5%) Query: 25 AKDT--IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRG 82 AKD I V L NP++ S G + A++ G +V+ D +++ ++++ DL +G Sbjct: 36 AKDPLKIGYSVYDLQNPYWQSYAAGVRAGAEEAGIEVVIADQKSSQQEQVSGSLDLINQG 95 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIA 142 L+I P A+ + + A+ IPV+ D T+G+ +I S+N GG++A +++ Sbjct: 96 ISALIITPVQPSALPSTIDAAHGEKIPVVVADI-GTEGDYDGYILSNNYEGGRLAAEHVV 154 Query: 143 KKAG-----EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 +K G VIEL AG+ ER GF + + F +++S + G Sbjct: 155 EKLGGTPGPHQVGVIELH--AGSVVGEERVSGFVDRLGEEENFEIVSSLDGNDTVDGGFT 212 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGK 253 Q++L+A+P++ ++A ND+ A+GA RA++TAG S ++GFDG+ + G Sbjct: 213 AAQDMLSANPELDVIYAANDDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLIEQGV 272 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGE 280 ++ T+AQ P G K VETA +L GE Sbjct: 273 MSGTVAQDPFGQGQKAVETALALLNGE 299 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 147/252 (58%), Gaps = 4/252 (1%) Query: 36 LNNPFFVSLKDGAQKEADKLGYNLVVLD--SQNNPAKELANVQDLTVRGTKILLINPTDS 93 L+ +++++K GA+ A +LG +V + + AK++ + D + +++ TD+ Sbjct: 40 LSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVINDFVNKKIDAIVVAATDA 99 Query: 94 DAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIE 153 +A+ +K A++A IPVIT+D +SHIA++N K A + +A G+ +V Sbjct: 100 NALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAAEVLANIIGKKGEVAC 159 Query: 154 LQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 + +AG + + R GF++ ++ +K +++A Q + D + V +N+LTAHP+++ +F Sbjct: 160 IPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIF 219 Query: 213 AQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 A N+ A+GA RAL+ GK+ DV++VGFD A+ +G + A I Q P +G +GV+ Sbjct: 220 AANEAGAVGAARALKARGKTADVILVGFDAAQTEIDAMKEGIIDALIVQRPYMMGYEGVK 279 Query: 272 TADKVLKGEKVQ 283 A L+GE+V+ Sbjct: 280 NAVAALEGEEVE 291 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 18/303 (5%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 + L LV A +A A A+ TLNNPFFV L DG ++ D+ G LV L Sbjct: 25 LCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGDRLVTL 84 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE- 121 D+Q + K+ ++ D+ + + +NP + ++V + A A IPVI +D + Sbjct: 85 DAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPVPDADL 144 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF-- 179 V++ +ASDNV G++A + A AKV LQ + A +R GF V A F Sbjct: 145 VLAQVASDNVAAGRLAAQALG-DARPQAKVAILQ-YSVNKACVDRVAGFTD-VLAKSFPG 201 Query: 180 -NVLASQPADFDRIKGLN-----VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS- 232 ++A Q +KG + VM++LL PD+ AVF ND A+G + A+ AG+S Sbjct: 202 ATIIARQ-----DVKGTSEATRPVMRDLLGRFPDLDAVFPINDPGAIGCVSAIDAAGRSG 256 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 V+VV DG+ + + + +G + +T AQ P +IG+ A L G+ V + V + L Sbjct: 257 KVLVVTVDGSREAAQFILNGGIHSTSAQFPKKIGSLAAGAAYDHLAGKPVDKEIKVPVTL 316 Query: 293 VVK 295 V K Sbjct: 317 VTK 319 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 11/263 (4%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + + TL+ P+F + + A+ +LGY ++ D+Q K++++V+DL RG K+L+I Sbjct: 38 IGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVKLLII 97 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIAGDYIAKKAG- 146 NP DS+ + NAV A+ + V+ +D + V+ + S N + G + G ++ ++ G Sbjct: 98 NPADSEGLVNAVNNASANGVKVVVIDSTLNPRANFVTQVQSSNSINGALVGHWVIEEVGN 157 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAA---HKF-----NVLASQPADFDRIKGLNVM 198 + K+ L G G +ER G + KF V+ ++ GL M Sbjct: 158 KSLKIALLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGHWNDEGGLKAM 217 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV-GFDGTPDGEKAVNDGKLAAT 257 ++LL A+ D+ V +ND M LGA RA+++AG++ +++V D + + GK T Sbjct: 218 EDLLVANKDINMVLGENDSMVLGARRAIESAGRTGILLVAAADAQKEALALIKQGKYGVT 277 Query: 258 IAQLPDQIGAKGVETADKVLKGE 280 P + ++ KV+KGE Sbjct: 278 GLNDPALVARTAIDLGVKVVKGE 300 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 141/262 (53%), Gaps = 5/262 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN-NPAKELANVQDLTVRGTKILL 87 +AL+V + F+ +++ GA+ A KLG L V + +PA + + + +L Sbjct: 49 LALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEEFSPAAQTPILNAVVQSNPDAIL 108 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGGKIAGDYIAKKAG 146 I PTD A+ ++ A +IPV+ +D K E+ ++ I+SDNV GG++AG+ +A++ G Sbjct: 109 IAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIALARISSDNVEGGRMAGEALAEQIG 168 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAH 205 KV+ + G S +R +GF++A+ + L ++ + D + ++ + L AH Sbjct: 169 GKGKVLLISVKPGISTTDQRKQGFEEAIKQYPDIEYLGTEYCNDDPTQAASITTSTLQAH 228 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 PD+ +F N GA ++ AGK D V VV FD +P + + G L IAQ P+ Sbjct: 229 PDLAGIFGANVFSGQGAGTGVRQAGKRDQVSVVAFDASPTQVEDLRRGNLDVLIAQHPND 288 Query: 265 IGAKGVETADKVLK-GEKVQAK 285 IG +GV+ A + L+ GE+ + K Sbjct: 289 IGRRGVQIAVRYLESGEEPENK 310 >UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG6_9FIRM Length = 331 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 137/271 (50%), Gaps = 8/271 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 VV + + F+ +++DG + +A +LG +V D++ +P VQDLT +G + + + Sbjct: 54 CGFVVGSFEHVFYQTIRDGIESKAKELGMEAIVTDAELDPNIATNKVQDLTAQGCEAIAL 113 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 + D+ V A++ A+ + + T D + + +DN GG++ G + K + +G Sbjct: 114 SCNDAAGVKPAIENADAEGVAMFTFDCSTDSEAINCFVGTDNYKGGQLGGQELLKYSEDG 173 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDV 208 + + S+ +R G + V+ D K +M+N+LTA+PD+ Sbjct: 174 -DTVGIICYPTASSCLDRQNGALDVLKDEDRTVVYDNDYQGDANKAQEIMENMLTANPDM 232 Query: 209 QAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND----GKLAAT-IAQLPD 263 AVF D A GAL A++ AG SD ++GFDG P+ ++A++D GK + IAQ P Sbjct: 233 AAVFCVGDPAATGALAAIKAAG-SDCKIIGFDGNPEAKEAISDTEGNGKWWVSEIAQNPT 291 Query: 264 QIGAKGVETADKVLKGEKVQ-AKYPVDLKLV 293 IG VE K L KV A+ P+D ++ Sbjct: 292 LIGETIVEQMQKYLDEGKVDAAEIPIDPYVI 322 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 151/283 (53%), Gaps = 19/283 (6%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLG---YNLVV--LDSQNNPAKELANVQDLTV 80 K +ALV+ +L N FF+++++GA KE K ++LV + + + A ++ V+ + V Sbjct: 35 KPKVALVMKSLANEFFLTMENGA-KEYQKHNASQFDLVTNGIKDETDTASQIRIVEQMIV 93 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ------ATKGEVVSHIASDNVLGG 134 +++ P DS A+ VK A A I V+ +D + +KG V + DN G Sbjct: 94 SKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDNRKGA 153 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKG 194 ++ GDY+AK+ G V ++G+ T+ A++R GFQ A+ A V++ Q +++ KG Sbjct: 154 RMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAGAKVVSVQSGEWEIDKG 213 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGK 253 V +L +P+++A+ ND MA+GA+ A++ AG+ V VVG+D + + DG+ Sbjct: 214 NAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINAIKPMLKDGR 273 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKY------PVDL 290 + AT Q + G++TA K L + QA PVDL Sbjct: 274 VLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDL 316 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 134/266 (50%), Gaps = 10/266 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 +A + + + F+ + G +K+A + G+ +LD Q + +++ +Q +G + + Sbjct: 43 VAFSIPEMFSTFWEACWYGFEKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGV 102 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 P +++A+G A+ N+A +PV +DR+ +GEVVS + +DNV G+ + + K GE Sbjct: 103 APIENEAIGPALTTVNEAGVPVFCVDRRG-EGEVVSTLETDNVKAGEAMAEQLVKDYGED 161 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPA--DFDRIKGLNVMQNLLTAHP 206 V+ +QG+ + +R +G + + ++ + +P+ ++ L +N L +P Sbjct: 162 VDVLIIQGVLSDTPTLDRTQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLETNP 221 Query: 207 DVQAVFAQNDEMALGALRALQTAGKS-------DVMVVGFDGTPDGEKAVNDGKLAATIA 259 D+ +F D + G + AL+ AGK+ V + DG + K + DG + T + Sbjct: 222 DLDVIFTCTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFS 281 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAK 285 Q P Q G V++ L G KV+ K Sbjct: 282 QYPIQFGIDTVKSMKTYLDGGKVEEK 307 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 144/274 (52%), Gaps = 21/274 (7%) Query: 33 VSTLNNP--FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINP 90 VS LN+ F+ S++ +++A + G+ L V D+ + K+L VQD + ++I P Sbjct: 63 VSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKKVDAIVIAP 122 Query: 91 TDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI-----AKKA 145 T+S + +++A +A IPV T+D A+ G+ V+H+A+DN GG++A +Y+ +K Sbjct: 123 TNSAGSKSMIELAEKAGIPVFTMDI-ASDGKPVTHVATDNKKGGQLAAEYVVNNILTEKK 181 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVA--AHKFNVLASQPADFDRIKGLNVMQNLLT 203 G A VI I + +R GF + A V+ Q D+ K +VMQN+L Sbjct: 182 GNVA-VITYSEI---ESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAADVMQNMLL 237 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND-GKLAATIAQLP 262 + ++ VF D A+GAL ++ TA + ++G+DG P+G + G A +AQ P Sbjct: 238 KNDNIDVVFCVGDPAAIGALSSI-TAANAATKIIGYDGNPEGVAEIKKGGNWVADVAQDP 296 Query: 263 DQIGAKGVETADKVLKGEKVQ-----AKYPVDLK 291 IG +E K L+GEKV A Y +D K Sbjct: 297 AGIGKTTLEAIKKHLEGEKVDSEILIAPYIIDAK 330 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MK++ L + +A++ + SA A ++I + +S ++ F L++ L N+ + Sbjct: 1 MKRI-LLAAVMAINFSCSAGA---ESIGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQM 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-- 119 D+QN+ A++ + VQ+ G +++NP D+DA K+A A +P++ ++RQ Sbjct: 57 EDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVD 116 Query: 120 --GEVVSHIASDNVLGGKIAGDYI-----AKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 E + IASD + G + + A+ G+ A V+ + G A+R+R + Sbjct: 117 RLPETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHD 176 Query: 173 AVAAHK---FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 +A + V+ Q A++ R + +N+M N L+A AV A DEMA+GA++A+++A Sbjct: 177 VIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSAGIQFDAVIANADEMAIGAIQAMRSA 236 Query: 230 GK--SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 G D +V G DG DG + + G L T+ Q GA ++TA + +G+K Sbjct: 237 GLPVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALDTALMLARGKKTDRTIW 296 Query: 288 VDLKLV 293 V +L+ Sbjct: 297 VPFQLI 302 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 149/299 (49%), Gaps = 17/299 (5%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M + + L++ V +S +VSA K I TLN FF L + + A + GY L+ Sbjct: 1 MKKRLIGLLLAGVTISMSVSAAEPLK--IGFANRTLNGAFFNGLTEYMKIHAKEKGYTLI 58 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ-ATK 119 D++ + K++A+V+D+ +G L++NP D A ++A +A +P + LD A + Sbjct: 59 TTDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIALE 118 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGA-KVIELQGIAGTSAARERGEGFQQAVAAHK 178 V++ + ++N + G+Y + G+ I L G G + R + F VA + Sbjct: 119 APVITRVQANNAKNNNLIGEYAVGQFGDKPMNCIFLSGNQGNLVGQARRDNFLLGVAEAQ 178 Query: 179 F--------NVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTA 229 N L+ ++D+ GL M++++ A D + V+++ D+MALGA+RAL+ A Sbjct: 179 LRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGDKINCVYSEMDDMALGAIRALKAA 238 Query: 230 GKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 K D V V DG G +AV G+L AT + PD + + +E + G Q +P Sbjct: 239 NKLDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEVIGQYQAG---QTSFP 294 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 136/251 (54%), Gaps = 10/251 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKD--TIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 M + + L+++VAL+ +++ A A++ TI V+ ++P + + GA+K AD+ G Sbjct: 6 MGRRIVLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCK 65 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA- 117 ++ D +++P+ + +++ + +G +++ PT SD + AVK N A IP++ DR+ Sbjct: 66 VIFADGKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQ 125 Query: 118 TKGEVVSH---IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV 174 T G+ + ++ D V G I G+ K G ++ ++G G + +RG F + + Sbjct: 126 THGQPIKWEALVSWDMVKSGTIGGEQTVKAIGGKGNIVVVEGTPGAGSTIDRGNAFYEVI 185 Query: 175 AAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGK 231 + +LA PA+F+R KG V +N+L ++ A++ DEM G L+A++ AG+ Sbjct: 186 EKYPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAIKAAGR 245 Query: 232 -SDVMVVGFDG 241 + ++ DG Sbjct: 246 LGEFKIISVDG 256 >UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7J1_ABIDE Length = 360 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 146/258 (56%), Gaps = 11/258 (4%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQD 77 +A+ ++ A+V+ T ++ F+ +K G ++EA KLG + V +++++ ++ +++ Sbjct: 62 TASVAGEEKYAIVLKTQSSQFWQDMKAGIEEEAAKLGVKVDVQSGNTEDDVEGQVQVLEN 121 Query: 78 LTVRGT-KILLINPTDSDAVGNAVKMANQANIPVITLDRQ-------ATKGEVVSHIASD 129 G K + + P + NA+ I I +D + G + +++A+D Sbjct: 122 FVSTGEYKAIGVAPISDVNLNNAIAEGCSKGIVFIDIDEKIDAKALGELGGGLYAYVATD 181 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADF 189 N G+ + K+ G A+V ++G AG + +R +G + A A ++ SQPAD+ Sbjct: 182 NKEVGETGAGELLKQVGNNAEVAIIEGKAGALSGEQRRDGAKAAFEAAGAKLVDSQPADW 241 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV 249 DR K ++V N+++A+P+++A++ ND MA+GA+ A++ +GK D+ V G DG D KAV Sbjct: 242 DRTKAMDVATNMISANPNLKAIYCCNDTMAMGAVEAVKKSGK-DIKVCGTDGNDDAIKAV 300 Query: 250 NDGKLAATIAQLPDQIGA 267 DG+LAAT+AQ P +GA Sbjct: 301 ADGELAATVAQNPKLVGA 318 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 138/253 (54%), Gaps = 6/253 (2%) Query: 36 LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDA 95 + NP+F++L+ ++E D L+V D + +P + + +Q++ G ++++P D + Sbjct: 70 MENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEGINAIILSPVDWEK 129 Query: 96 VGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 + +++ +A++ ++ +D Q + + V ++I SDN G + G+ + K+ +G KV L Sbjct: 130 ITPSLEALKEADVKIVNVDTQVKEMDYVDAYIGSDNYNAGVLCGEDLIKRCPDGGKVAIL 189 Query: 155 QGIAGTSAARERGEGFQQ--AVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 + ++ ER GF++ A A + F ++A + + K L Q +L+ + D+ A+ Sbjct: 190 E-CPTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQKILSENSDIVAIM 248 Query: 213 AQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV--NDGKLAATIAQLPDQIGAKGV 270 ND+MA+GA A+ A + +++ G DG+PD +K + + ++A T+AQ P +G Sbjct: 249 CGNDQMAVGAKTAMNVAEQGQILIYGVDGSPDIKKELKKTENQIAGTVAQSPISMGKDAA 308 Query: 271 ETADKVLKGEKVQ 283 T +L G+ + Sbjct: 309 NTVLNILNGKDYE 321 >UniRef50_A8L4W4 Periplasmic binding protein/LacI transcriptional regulator n=15 Tax=Bacteria RepID=A8L4W4_FRASN Length = 363 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 23/275 (8%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPAKELANVQDLTVRGTKI 85 T+ L+ + NPFFV ++DGAQ+ A + L+ + + A +++ ++++ G + Sbjct: 59 TVGLITKSYTNPFFVKMRDGAQQAAREQKVELLTATGRFDGDYASQVSAIENMVAAGARG 118 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHI-ASDNVLGGKIAGDYIAKK 144 +LI P DS A+ A++ A + VI LD V + ++DN G + G+Y Sbjct: 119 ILITPNDSKAIVPAIEQARHRGVLVIALDVPTDPESAVDALFSTDNFKAGILIGEYARAA 178 Query: 145 AGEGAKVIELQGIAG--TSAARERGEGF--------------QQAVAAHKFNVLASQPAD 188 G+ I ++ T R GF QQA +V+ S+ + Sbjct: 179 MGDTPARIATMDVSSHITGGGLLRHNGFLVGFGALDVTVSETQQATPP---SVVCSRDSK 235 Query: 189 FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKA 248 D+ KG M + L PD+ V+A N+ A GA AL AGK+DVM+V DG G +A Sbjct: 236 GDQAKGRTAMADCLRTDPDINLVYAVNEPAAFGARTALDAAGKADVMIVSIDGGCTGVRA 295 Query: 249 VNDGKLAATIAQLPDQIGAKGV-ETADKVLKGEKV 282 V DGK+AAT Q P ++ +GV D V G KV Sbjct: 296 VRDGKIAATSQQYPLKMAEQGVAAVVDYVKDGTKV 330 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 10/285 (3%) Query: 9 LVSAVALSATVSANAMAKD---------TIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 LV A+ +S ++ K+ TI T ++ F ++ D A+ A + G +L Sbjct: 10 LVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAEDAAKEQGVDL 69 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 ++ D++ + K++ + + L + L++ P D + V MAN+A+IP+I + Sbjct: 70 IMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPIIICNGDIAD 129 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 + + + G+I G + G+++ ++G G S R GF++ F Sbjct: 130 KNYTAFVGCTDQESGEILGTWFNDNVEHGSQICIIEGPMGQSGQVGRYAGFEEVGMLDNF 189 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 VL+ Q A++ R + + + ++ LT + D ++A+ +ND+MA+GAL A + AG++DV++ G Sbjct: 190 EVLSCQTANWKRDEAMALAEDWLTTYGDKLKAIVCENDDMAMGALSACKAAGRTDVVIGG 249 Query: 239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ 283 DG D +AV DG+L ++ Q G VE A +++ GE Q Sbjct: 250 VDGLEDAIQAVKDGELGVSVLQDSAGQGEGAVEVALQIINGEDYQ 294 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 14/303 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MKK ++A L +T A +TI ++ ++ F L++G + A L G +L + Sbjct: 1 MKKFIIGIAAAVLVST----AAHAETIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQI 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA---- 117 D+ N+ AK+ + +Q+ G +++ P D+DA K+A A IP++ ++R+ Sbjct: 57 EDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNID 116 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 T E + +AS+ V G + I K K + + G AAR R + +A Sbjct: 117 TLPEKQAFVASNEVDSGTLQTREICKLLDGKGKAVVIMGELSNQAARMRTKDIHDVLATD 176 Query: 178 K---FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-- 232 + ++ Q A++ R +G ++M N L+A + AV A NDEMA+GA++AL+ AG+S Sbjct: 177 QCKGIEIVQEQTANWQRTQGADLMTNWLSAGIEFDAVIANNDEMAIGAIQALKAAGRSMD 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 V++ G D T D A+ G+L ++ Q G ++ A K+ KGE V+ K + +L Sbjct: 237 SVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEAVERKIYIPFEL 296 Query: 293 VVK 295 V K Sbjct: 297 VTK 299 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 139/265 (52%), Gaps = 17/265 (6%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGY---NLVVLDSQNNPAKELANVQDLTVRGTKI 85 +AL +S + N F +L QKEA++LGY + + D +N+ A +++ ++ G Sbjct: 1 MALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDG 60 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGG--KIAGDYIAK 143 ++I P +D + AVK A + + V+ L+++ + A+D +G + G + K Sbjct: 61 IIIEPVSTDGIVKAVKDAEKVGVKVVILNQR-----ISDQNAADTFVGADNESTGAALMK 115 Query: 144 KAGEG----AKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVM 198 K E ++EL G G+ R +GF +A + V+AS AD+D K L + Sbjct: 116 KVMEDLDGKGNIVELLGPMGSDGQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLT 175 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAAT 257 +N LT+ D+QAV AQND MA+GA +A++ AG +D + V G D T DG A+ +G + T Sbjct: 176 ENWLTS-SDIQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGGMTGT 234 Query: 258 IAQLPDQIGAKGVETADKVLKGEKV 282 ++Q + G + ++ G+ V Sbjct: 235 VSQGTENQGKISADLCSNLIYGQSV 259 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 148/288 (51%), Gaps = 7/288 (2%) Query: 5 KLATLVSAVALSATVSANAMAKDT--IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 KL+TL+ A ++ ++ A A + I L V L FF +K G +K A + G +VV+ Sbjct: 2 KLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVV 61 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 D++N+ +++ VQDL ++ + P + A ++A +A IPVI +DR Sbjct: 62 DAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAPG 121 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL 182 + IA ++V +I +KAG K+ + G GT+ +R G ++A+ +K L Sbjct: 122 DTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKRAIDENKGVEL 181 Query: 183 ASQPAD--FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGF 239 Q + +G ++ QN+L A+PD+ +F Q D +A+GA +A+ A SD V++ G+ Sbjct: 182 IDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGGY 241 Query: 240 DGTPDGEK--AVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 DG + A G AT Q ++G VE+A V GEKV+ + Sbjct: 242 DGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEER 289 >UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0C383_9CLOT Length = 336 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 138/254 (54%), Gaps = 10/254 (3%) Query: 33 VSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 V + NP+F++L+ ++ + GY ++ D ++ A + A +Q++ G + + P D Sbjct: 58 VIDMQNPYFITLEGATREAVESGGYRMITKDPASDAAAQAAQIQEMIAEGIDAVFLCPVD 117 Query: 93 SDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKV 151 + + +++K A + +I +D Q + E V ++I SDN G I G+ + +K +G K+ Sbjct: 118 WEEITDSLKALKDAGVRIINVDSQVKEMEYVDAYIGSDNHNAGFICGEDLIEKRPDGGKI 177 Query: 152 IELQGIAGTSAARERGEGFQQAVA-AHK-FNVLASQP--ADFDRIKGLNVMQNLLTAHPD 207 L+ ++ +R GF++A+A A K F V+A + +FDR L + +L +PD Sbjct: 178 AILE-CPTQNSINDRITGFEEAIADAEKGFEVVAREDTGGEFDR--ALEAAEKILKENPD 234 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDG--KLAATIAQLPDQI 265 + A+ ND++A+GA+ A+ A DV++ G DG+PD +K ++A T AQ P + Sbjct: 235 ITAIMCGNDQIAVGAMTAVNLAKMEDVIIYGVDGSPDIKKEFKKAGCQIAGTAAQSPINM 294 Query: 266 GAKGVETADKVLKG 279 G +T +LKG Sbjct: 295 GKTAAKTGISILKG 308 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 145/273 (53%), Gaps = 4/273 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTK 84 K I L + ++ F + + + EA L +LVV++++ +PA++ + + +L + Sbjct: 33 KYRIGLSIPASDDVFRNKIINAMENEAKNLPDTDLVVVNAKGDPARQKSQISNLVAQKCN 92 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDR-QATKGEVVSHIASDNVLGGKIAGDYIAK 143 +L+ P D+ + ++AN + IP+I+++ + + +++ SD++ G + +Y K Sbjct: 93 AILVLPVDTLLSSDYTQIANDSGIPIISVNNFLKNQDDAAAYVGSDSITSGIMEAEYAVK 152 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLL 202 + V+ L+G A +R EGF+Q + + + ++ Q D+ R G+ + +N + Sbjct: 153 QLNGKGNVVILKGEPNHETAIKRTEGFKQVLQNYPEIKIIDEQYGDWKRTLGMQITENWI 212 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQL 261 A+ A NDEMA+GA+ AL+ ++V V G D TPD K + +G L T+ Q Sbjct: 213 KNGTKFDAILANNDEMAIGAIMALKENNLINNVFVGGIDATPDALKLLKEGSLKVTVFQN 272 Query: 262 PDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G++ ++ A K++KGEK+ K V +LVV Sbjct: 273 AAGQGSEAIKAAYKLVKGEKINKKIFVPYELVV 305 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 12/226 (5%) Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 D++ N A+++A+V+ +G +L+I+P ++ + V A Q IPVI LDR+ + Sbjct: 79 DARQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQY 138 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAK----VIELQGIAGTSAARERGEGFQQAVAAHK 178 I +DN L G+ AG+Y A+ E + VIEL+G+ G++ +ERG+GF++ +AA+ Sbjct: 139 TMWIGADNRLIGRKAGEYTARWCREQQRSPCTVIELRGLEGSTPTQERGDGFREGIAANP 198 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD--VM 235 ++ASQ AD+ + + + L A+PDV V+A ND M + A + G+ ++ Sbjct: 199 DVRIIASQNADWLAERADALARVLFEANPDVDVVYAHNDPMGIAAFNVAKEQGRDTDAIL 258 Query: 236 VVGFD--GTPDGE-KAVNDGKLAATIAQLPDQIGAKGVETADKVLK 278 +G D T DG +AV GKL T P GA+ +E A ++L+ Sbjct: 259 FIGIDALATSDGGIQAVRQGKLNVTYV-YPTG-GAEAIEWALRILE 302 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 140/264 (53%), Gaps = 6/264 (2%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 T+NNPFF + + +K + G L+ LD + K+ + DL + + +NP D+ Sbjct: 49 TMNNPFFEVINNEIKKAVEANGDVLITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAK 108 Query: 95 AVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKI-AGDYIAKKAGEGAKVI 152 + +K A +A IPVI +D +V IAS+N G + A D ++K+ + AK+I Sbjct: 109 KIEIGLKAAKKAKIPVIVVDAPIYDESLVNCSIASNNYDAGVLCAKDMMSKR--DHAKII 166 Query: 153 ELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 L+ SA ER +GF +A++ + V+ D + M+ +L PDV V Sbjct: 167 LLEHATAKSAV-ERIQGFLDTIASNANYQVINRADCDGQIEIAMPTMKQMLKETPDVDVV 225 Query: 212 FAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 A ND ALGAL A+++ +V+V G DG+PD ++ +N G + AT AQ P ++G + Sbjct: 226 MALNDRSALGALAAIESMEIDNVLVYGVDGSPDVKELINTGLIQATAAQSPVKMGQLAYQ 285 Query: 272 TADKVLKGEKVQAKYPVDLKLVVK 295 A +L+ +K++ K V ++L+ + Sbjct: 286 KAKALLENKKIEKKIEVPVELISR 309 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 155/304 (50%), Gaps = 14/304 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MKK + A+S + A A +T+ + ++ ++ F L++G + +L G L V Sbjct: 1 MKKF---IIGAAMSVLLGTAAHA-ETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQV 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 D+QN+ AK+ + +Q+ +++NP D+DA K+A A IP++ ++RQ + Sbjct: 57 EDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVD 116 Query: 122 VV----SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + +ASD + G + + + G + + G AAR R + + + Sbjct: 117 SLPDGQAFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLKTD 176 Query: 178 K---FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--S 232 + +V+ Q A++ R +G +++ N L++ + AV A NDEMA+GA++AL+ AGK Sbjct: 177 ECKGISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKDMK 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 +V G D T D A+ G L T+ Q G ++ A K++KG+K++ K + +L Sbjct: 237 SYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPFQL 296 Query: 293 VVKQ 296 V + Sbjct: 297 VTPE 300 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 5/265 (1%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 T+NN F+ + + + + +K G ++ LD + K+ ++ L R + +NP D Sbjct: 53 TMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDAIFLNPVDWK 112 Query: 95 AVGNAVKMANQANIPVITLDRQATKGEVVSH-IASDNVLGGKIAGDYIAKKAGEGAKVIE 153 AV + A +A IPVI +D Q + ++V+ I SDN G + + K+ + A ++ Sbjct: 113 AVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIVSDNYKAGVLCAKEMMKQKDQ-ANIVL 171 Query: 154 LQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 L A SA +R GF + +K + +LAS + L + ++ + ++ V Sbjct: 172 LTHNAARSAV-DRINGFLDTIKNNKNYKILASADTQGQIERALPKVDKIIEEYQNIDVVM 230 Query: 213 AQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 ND A+GAL AL + G + V+V G DG+P+G+K + +G + T AQ P Q+ V Sbjct: 231 GLNDPAAMGALAALDSKGAREGVLVYGIDGSPEGKKLIKEGMMTGTAAQSPKQMADTAVN 290 Query: 272 TADKVLKGEKVQAKYPVDLKLVVKQ 296 A ++L+GEKV+ K + ++++ K+ Sbjct: 291 AAYQILQGEKVEKKKVISVQMITKK 315 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 5/270 (1%) Query: 31 LVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 +V ++ F +S+ DGA+ A + + ++ + +++ V+ G +L Sbjct: 60 FIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITDGADAIL 119 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 I P DS + A++ AN A IP+ T + +A G+V++ I DN G G + + Sbjct: 120 ITPADSTGIVPAIEKANAAGIPIATPNTKAYGGDVLTWIGVDNYTVGYELGTALCEALEG 179 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP 206 KV+ ++G AG S + ER +G+ A + +L SQPADF+R KG+ VM+N L +P Sbjct: 180 TGKVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNREKGMTVMENFLQRYP 239 Query: 207 DVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 ++ V + N +M +GA+ A + G+ MV V FD D A++ G + T AQ Sbjct: 240 EIDGVGSINKDMTMGAIEACKAVGRDKEMVQVTFDVDNDCLDAIDAGDILITGAQEEKSQ 299 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A + G KV + + + LV K Sbjct: 300 IANAIYACLLACNGYKVAPEQYIPMTLVTK 329 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 141/253 (55%), Gaps = 9/253 (3%) Query: 40 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 99 +FV++++G K A + + D+ + +K+L+ V+DL + ++ I DS+A A Sbjct: 52 YFVAVREGIDKAAAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTA 111 Query: 100 VKMANQANIPVITL-----DRQATKGE-VVSHIASDNVLGGKIAGDYIAKKAGE-GAKVI 152 V+MAN+ANIP++ D++ + E +++++ + V GK+ G+ GE G KV+ Sbjct: 112 VRMANEANIPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVV 171 Query: 153 ELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 ++G GTS R +G +A+ +K F V+ +Q +++++ + L ++++L+ + + + Sbjct: 172 LIEGRPGTSPQINRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQTIDVI 231 Query: 212 FAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGV 270 AQ+D A+GA AL+ A K ++V+G G+ +G AV G + T + G + Sbjct: 232 IAQDDNSAIGAGMALKEANLKDKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAI 291 Query: 271 ETADKVLKGEKVQ 283 A K L GEKV+ Sbjct: 292 TAAVKYLNGEKVE 304 >UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic component n=4 Tax=Proteobacteria RepID=Q7MCP2_VIBVY Length = 318 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 139/289 (48%), Gaps = 13/289 (4%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M+M+ LA V A+ S +SA+ I +VS L PF+ + G + EA +LGY V Sbjct: 1 MDMRHLAFCV-ALFFSPWLSAS----QQIVYMVSDLRIPFWQIMWGGIENEAKQLGYEAV 55 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 VL ++N+ EL N+ ++++PT+S A +KMA QANIPV+ D G Sbjct: 56 VLSAENDAKTELENIIKAIALKPDGIILSPTNSSAAVTILKMAEQANIPVVISDIGTEGG 115 Query: 121 EVVSHIASDNVLGG-KIAGDYIAKKAGEGAKVIELQGIAGTSAAR----ERGEGFQQAVA 175 VS+I SDN G ++A A +G + E+ G+ R ER EGF +A Sbjct: 116 TFVSYIESDNFSGAFQLAQILAAAMKAKGWQNGEV-GVVAIPQKRKNGIERTEGFVEAAK 174 Query: 176 AHKFNVLA-SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD- 233 + A Q DF + Q +L H ++A++ Q + AL A+ + G+ D Sbjct: 175 QQGMRIAAIKQQKDFSYQETFIFTQTMLREHRKIRAIWLQGSDRYQAALDAIDSLGQRDK 234 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 V+++ FD P+ + +L + Q P +G + + + + L G V Sbjct: 235 VLLICFDAEPEFIDMIRSQQLVGSGMQQPFLMGERAMNSLHQYLLGHTV 283 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 8/272 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQ---KEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 I + L+ F L+ + K D + L++ D+++ K+ + + +G Sbjct: 48 IGCTLQNLSEEFMTMLQGAMELQLKNYDNV--KLIINDAESQSDKQASQLDSFVAQGVDA 105 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 ++I+P D+DA+ +AVK A IPVIT T + + S N GG+I Y+A+K Sbjct: 106 VIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVWVGSSNENGGEIEMKYVAEKL 165 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTA 204 G K+ L+G G A + R G++ + + ++ Q ++ R + + +++NLLTA Sbjct: 166 GGKGKIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFDQTGNWQREEAMALIENLLTA 225 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 ++ A+ QND MALGAL A++ AGK D + + G D D ++ G+L AT Q Sbjct: 226 GTELDAIVCQNDGMALGALEAVKAAGKKDQITITGIDAIVDALDSIKAGELDATCFQDAI 285 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G ++ A K +GE V+ + + +LV K Sbjct: 286 GQGTNALDMAVKAARGETVE-RMDIPFELVTK 316 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 131/254 (51%), Gaps = 23/254 (9%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP------AKELANVQDLT--- 79 IA + T ++PF+ ++ G Q A +LG +V ++ P K+++ + +L Sbjct: 80 IAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNN 139 Query: 80 -VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 + G L+I P DS + ++ A Q I VI +D ++++ + DN GG+I G Sbjct: 140 DLDG---LVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQILTFVTFDNFEGGQILG 196 Query: 139 DYIAKKAGEGAK------VIELQGIAGTSAARERGEGF----QQAVAAHKFNVLASQPAD 188 +++ +K + ++ ++ L+G ER +GF ++A + +L + AD Sbjct: 197 EWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKSAD 256 Query: 189 FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKA 248 ++ K + Q L P + + A +D+MA+GA A+Q A KS +++ GFDGTP G A Sbjct: 257 WETKKAKMITQAWLEKFPTIDVIMAADDQMAVGASEAVQEANKSGIIITGFDGTPYGLNA 316 Query: 249 VNDGKLAATIAQLP 262 + G++ ATI QLP Sbjct: 317 IKTGQIDATINQLP 330 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 146/282 (51%), Gaps = 6/282 (2%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQD 77 SAN+ K I LV + F+ S++ GA+K ++LG N + + + K++ V++ Sbjct: 31 SANSGDKIKIELVSKGYQHEFWRSVEAGAKKAGEELGVEVNFIGPEKETEIGKQVGMVEN 90 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKI 136 + L I D DA+ K A A IPV+T D KG++ S IA+DN + G + Sbjct: 91 AINKKVSALGIAALDPDALAVVAKKAMDAKIPVVTFDSN-VKGDITSSFIATDNKVAGAM 149 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGL 195 AG+ +AK KV + GT+ A ER GF++A+A + +L +Q +D D+ K L Sbjct: 150 AGEQLAKLINGKGKVAIVSHNPGTTTAIEREAGFREALAKYPDIKILNTQFSDGDKSKAL 209 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKL 254 + +++ A+PD+ ++ N+ G + ++ G V++VG D + D K + G + Sbjct: 210 AITLDIINANPDIAGIYGTNEPSIFGIAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKGVI 269 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + + Q P +G + V+ K+ KGEKV+ + LV K+ Sbjct: 270 SGLVIQDPYNMGYQTVQQLYKLSKGEKVEKRIDTGAILVTKE 311 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 153/301 (50%), Gaps = 15/301 (4%) Query: 9 LVSAVALSATVSANA---MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 L S+ S + S+N K + + V TL NPFFV L + A+ EA+K GY +++L S Sbjct: 16 LFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKAEAEKHGYEVIIL-SG 74 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--GEVV 123 ++ K+ ++D + +++ P ++ A+G +K AN A IPV T D T +VV Sbjct: 75 DDAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEIPVFTADTGCTDPGAKVV 134 Query: 124 SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH------ 177 ++ +DN GGK+A + G KV+ L + R +GF++ +A H Sbjct: 135 CNVMTDNFGGGKLAAQAMIDVLPNGGKVLILD-FKKAQSCLLRVDGFKEVIAEHNEAHPD 193 Query: 178 -KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVM 235 K ++A ++ L A PD++ VFA ND ALGA+ AL+ A K DV Sbjct: 194 KKIVIVAELDGAAAEEPSKKATEDQLNATPDLKGVFAINDLSALGAVVALKKANKLQDVK 253 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 ++GFDG G++A+ G++ A Q P +IG V+ G++V+ + + KL + Sbjct: 254 IIGFDGLRIGKEAILRGEIHADPIQFPSEIGKLTVQQILAYKNGDEVKPEILIATKLYYQ 313 Query: 296 Q 296 + Sbjct: 314 E 314 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 153/300 (51%), Gaps = 9/300 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 ++ LA + +A + +SA + A T ALV FF + GAQ A G +LV+ Sbjct: 9 LRLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIF 68 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 +S +NP + +++ +G K +L+ D + + AVK A ANIPVI +D G Sbjct: 69 NSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGPQ 128 Query: 123 VSHIASDNVLGGKIAG----DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + + DN+ GG+I G DY+ K+ G A+ + + G ++ +R +GF++ + ++ Sbjct: 129 AAQVGVDNIEGGRIIGQYFVDYVQKEMGGQAR-LGIVGALNSAIQNQRQKGFEETLKSNP 187 Query: 179 FNVLASQPADFDRI--KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVM 235 + + D + K + +NL+T +PD+ A++A + LGA+ A++ G+ D+ Sbjct: 188 -KITIANVVDGQNVQDKAMTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIK 246 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V G+D T ++ G + A + Q P+++GA+ + + + G+ V V +V K Sbjct: 247 VFGWDLTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTILVPATVVTK 306 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 141/272 (51%), Gaps = 11/272 (4%) Query: 29 IALVVSTLNNPF--FV--SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 +++++ T +N F FV ++K ++ DK+ ++ LDS+ + +++ V++ + GT+ Sbjct: 69 VSVIIETFDNTFASFVMNAMKKYEEEHKDKI--HITYLDSKQDANTQISQVENQILNGTQ 126 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 ++ D+ V+ +A +P+I +R + S + +D + G + + +K Sbjct: 127 AIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFENCD--SFVGADGAVAGSLLARFTGEK 184 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLL 202 G V + GI G R + + + V+ D+ R K L +++ L Sbjct: 185 TGGKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGDWKRDKALQLVETWL 244 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQL 261 + D+ A+ ND+MA+G A++ AGKSD ++V G +G PDG AV DGK+AAT+ Q Sbjct: 245 QSGTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDGINAVRDGKIAATVFQN 304 Query: 262 PDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 PD+ + +E A + + GEK ++K + +LV Sbjct: 305 PDRQAEEALEAALQYIHGEKPESKIMIPFELV 336 >UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D949_9CLOT Length = 352 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 11/241 (4%) Query: 55 LGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD 114 +G+ +V ++ N+ A ++ANV+DL +G +L+I P + + + A++ A +PVI LD Sbjct: 92 VGFEVVWNEANNDTATQIANVEDLLAQGIDLLVIKPKEEEGLIPALEACRDAGVPVICLD 151 Query: 115 RQATKGEV-VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 R+ + + V+ I +DNV GG+ G ++ +G K++E+ G AG++ ER +G Sbjct: 152 RKVSDPSLYVTAIMTDNVAGGETVGQWLVDHYPDGCKIVEIVGTAGSTGQIERSKGLSNV 211 Query: 174 VAAH-KFNVLASQPADFDRIKGLNVMQNLLTAH--PDVQAVFAQNDEMALGALRALQTAG 230 + + + +++SQ D R + V +N++ A+ + + QNDEMA+G L+AL G Sbjct: 212 IDKYDQIQIISSQVGDNMRSEAQTVTENMIQAYGKEGIDVIVTQNDEMAMGCLQALWGLG 271 Query: 231 -----KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 + + +G DG + + V DG + P +G + +E A K+ ++ K Sbjct: 272 IEPGQEITICTIG-DGNSEVVEQVKDGTVGCVYESTP-YLGPQVLEVAHKIFVTKEDVEK 329 Query: 286 Y 286 Y Sbjct: 330 Y 330 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 11/256 (4%) Query: 32 VVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTVRGTKILLIN 89 V TL N ++ SL +G A KLG V S+ + +LA ++L +G LL + Sbjct: 62 VSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENLISQGFNALLFS 121 Query: 90 P-TDSDAVGNAVKMANQANIPVITLDRQA--TKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 P TD++ + AV+ A A +PV+ ++ + V ++ N G +A +IA + Sbjct: 122 PQTDANLI-PAVEAATAAGVPVLNVNDAVIPSAANYVGNVQKGN--GVNVANWFIANRP- 177 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAH 205 +G KV ++G G AA +R GF + + A KF V+AS PA++ R + N +L + Sbjct: 178 DGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSREEAFNAASTILQQY 237 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 PD+ +A ND MALG + A++ AGK++ V V G DG D AV G L T+ P Sbjct: 238 PDLIGFYANNDGMALGVVEAVKAAGKAEQVAVFGTDGISDAYAAVRAGDLTGTVDSFPVL 297 Query: 265 IGAKGVETADKVLKGE 280 G +E A +++ G+ Sbjct: 298 TGEIAMEVALRLMAGQ 313 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 142/295 (48%), Gaps = 35/295 (11%) Query: 6 LATLVSAVALSATVSANAMAKDT----IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 +A V+ L+AT A A K + +V+ T NPFFV +K+GA+ A +LG L Sbjct: 9 MAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAARLGLELRS 68 Query: 62 LDSQ--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA-T 118 + + ++ V+ L G K +LI P+DS A+ ++ A I VI LD Sbjct: 69 FAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVIALDTPLDP 128 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAK-----VIELQGIAGTSAARERGEGFQQA 173 G + A+DNVL GK+ G++ AK G AK +++L + S +R +GF + Sbjct: 129 PGAADATFATDNVLAGKLVGEWAAKTLGANAKSAKVALLDLN-VNQISVDVDRDQGFLKG 187 Query: 174 VAAHKFNVLASQPADF-----DRIKGLNV-----------MQNLLTAHPDVQAVFAQNDE 217 F V + PA RI G +V M+NLL P V V+A N+ Sbjct: 188 -----FGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPYVSVVYAINEP 242 Query: 218 MALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 A GA AL++ G+ DV+VV DG G + V DG +AAT Q P + GVE Sbjct: 243 AAAGAYEALRSIGRDKDVLVVAVDGGCPGVRNVKDGVIAATAMQFPLAMAQMGVE 297 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 22/245 (8%) Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L++ D ++ K++A+V++L + LL++P +S + V+ A A IPV LDR Sbjct: 68 LIITDGEDRTEKQVADVENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVE 127 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAK----VIELQGIAGTSAARERGEGFQQAV 174 + + DN L G+ AG+Y + G K ++E+ G GT A +R +GF Sbjct: 128 TDQYTQFVGGDNKLIGRAAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGF---- 183 Query: 175 AAHKF--------NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 226 H+F N+L Q D+ + + N+M L + + V+ ND MA GA A Sbjct: 184 --HEFTDKEPGIKNLLDKQSGDWKQDQAYNIMATALRNNEKIDLVYGHNDPMAYGAYLAA 241 Query: 227 QTAGKS-DVMVVGFDGTP-DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA 284 + AG+ ++ +G D P +G V++G+L AT L GA+G+ A K LKGEKV+ Sbjct: 242 KDAGREKEIKFIGIDALPNEGVTWVSNGELTATF--LYATPGAEGLRQAVKFLKGEKVEK 299 Query: 285 KYPVD 289 +D Sbjct: 300 TVTLD 304 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 147/296 (49%), Gaps = 20/296 (6%) Query: 8 TLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QN 66 TL +A++ A K TIAL+ + F++++ GA++ A +LG L+ + Sbjct: 13 TLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGGPEF 72 Query: 67 NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD--------RQAT 118 +P ++ + + R +LI PTD + + +K A++A I +IT+D Q Sbjct: 73 SPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQTG 132 Query: 119 KGEV---VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 KG ++++ASDNV GG+IA +AK GE KV G S +R +GF++ + Sbjct: 133 KGNADFPLAYVASDNVEGGRIAARALAKAIGEKGKVYVSNVKPGISTTDQREQGFKEEMK 192 Query: 176 AHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD- 233 + VLA+Q D D K + + L +PD+ VF N A+GA ++ AGK Sbjct: 193 KYPGITVLATQYNDNDANKAASQLAAALARNPDLAGVFGANLFSAIGAANGVKNAGKRGA 252 Query: 234 VMVVGFDGTPDGEKAVND---GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 V V FD P E +ND G + + Q P ++G VE A K L GEK+ +Y Sbjct: 253 VKVAAFD-CP--ESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEKIPNRY 305 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 125/238 (52%), Gaps = 8/238 (3%) Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE- 121 DS ++P ++ VQ+ + LL+ PTD V +A +A IP+I ++R+ Sbjct: 62 DSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEHM 121 Query: 122 --VVSHIASDNVLGGKIAGDYIAKK-AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 V S + SD + GG+I G++I AG+ A+ + L G G A +R +G ++ A HK Sbjct: 122 QYVTSFVGSDEIEGGRIQGNFIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQHK 181 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVM 235 V++ Q ++R +GL + +N+L + + + + NDEMA+GA+ A + G D+ Sbjct: 182 NIKVVSKQEGRWERDRGLAIAENVLAGNKGINVIVSNNDEMAIGAILATRKLGIKDEDIT 241 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +VG D TPD + + G L AT+ Q G G E A KGEKV + V +LV Sbjct: 242 IVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKGEKVPSVKWVPFELV 298 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 7/240 (2%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKELANVQDLTVRGTK 84 K I + + + P+ + D + A ++ + + D+ + AK++A+V++ + Sbjct: 46 KYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYITQQID 105 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 +L+I+P ++ + VK A IPV+ LDR+ I DNV G AG Y+A+K Sbjct: 106 LLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDAYTGFIGGDNVQIGTEAGKYVAEK 165 Query: 145 A-GEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLL 202 G V+E++G+AG + ER +GF + A+ K V+A+ D+ R KG M LL Sbjct: 166 VLPNGGNVVEIKGLAGATPQAERNQGFATGIKANPKVKVVATASGDWLREKGQAQMDALL 225 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVM-VVGFDGTP---DGEKAVNDGKLAATI 258 A+P + V+A ND MA GA A + G+ M +G D P G KAV G+L AT Sbjct: 226 KANPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIGIDALPIPSGGIKAVEQGRLTATF 285 >UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroides RepID=C3RC01_9BACE Length = 282 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 131/260 (50%), Gaps = 10/260 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGY-NLVVLDS--QNNPAKELANVQDLTVRGTKI 85 I LV+ +L FF +K+GA + A L + +LV + + Q +++ + L + Sbjct: 7 IGLVMKSLQADFFKVMKEGAIQYAAPLPFLDLVCVGTATQTEVKEQIDLMYSLIHQQVDA 66 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQ------ATKGEVVSHIASDNVLGGKIAGD 139 +++ P DS A+ A + IPVI +D Q G V+ + DN G Sbjct: 67 IVLVPIDSKALVQPAVEAVRKGIPVINIDIQLDAQLLEQAGVEVAFVGPDNFAAAYEVGK 126 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQ 199 + KK KV ++G+A A++R GF +A+ ++AS+PAD++ K V Q Sbjct: 127 LLGKKLRNEDKVAIIEGLAAADNAQQRKRGFIKAIEEKGLRLVASEPADWETEKAAEVFQ 186 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIA 259 + +PD++AV+ ND MALG L+ +Q K + VVGFD ++ ++ GKL AT Sbjct: 187 AMWMRYPDLKAVYCSNDAMALGVLQQMQEK-KCYLPVVGFDNDAVMKEFLSTGKLVATAD 245 Query: 260 QLPDQIGAKGVETADKVLKG 279 Q+ +G+E A VL+G Sbjct: 246 IFSSQMAVRGIEFALDVLEG 265 >UniRef50_A7B2I9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A7B2I9_RUMGN Length = 348 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 141/274 (51%), Gaps = 19/274 (6%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT-VRGTKILL 87 I ++V + NPFF + ++EA + GY +++ +S NNP KE N+Q L ++ I++ Sbjct: 79 IGMIVPNIENPFFSEIAKAVEEEAFQNGYKMLLCNSANNPKKERMNIQMLVQMQADGIVI 138 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 + T+SD G + + +PV+ +DR+ ++G ++ I SD+ GGK+A +++ + + Sbjct: 139 M--TNSDRTGKKIA---ECGLPVVVMDRKLSEGREIAFIESDHYKGGKLAAEHLIECGCQ 193 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 ++ L+G S+ ++R +G++ + + D+D GL + L+ +PD Sbjct: 194 --HIVCLRGPMKFSSGQQRYQGYEDVCRKYGRKAVWID-CDYDYDAGLAAAEELIRRYPD 250 Query: 208 VQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 + A ND A+ + L G+ DV +VGFD + + TI+Q ++ Sbjct: 251 TDGILASNDMAAMAVYKVLHQNGRRVPEDVQLVGFDNIEFSRRMTPE---LTTISQPIEE 307 Query: 265 IGAKGVETADKVLKGEKV--QAKYPVDLKLVVKQ 296 +G V+ + GE++ Q + D++L+ +Q Sbjct: 308 MGKLAVQMI--IHHGEEISYQKENIFDVELIRRQ 339 >UniRef50_A1TUU8 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TUU8_ACIAC Length = 318 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 11/282 (3%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQ--KEADKLGYNLVV--LDSQNNPAKELANVQ 76 A A K +ALV+ +L N FF +++DGA+ ++A Y LV + ++ + A ++ ++ Sbjct: 25 AFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHASEYTLVANGIKNETDTAAQIKMIE 84 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ------ATKGEVVSHIASDN 130 + +++ P DS A+ AVK A I V+ +D + K V + DN Sbjct: 85 QAVAQKVNAIVLAPADSKALVPAVKAAVDKGILVVNIDNRLDANALKEKSLNVPFVGPDN 144 Query: 131 VLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFD 190 G K+ GDY+AK+ G KV ++G++ T A++R GFQ A+ A NV+ Q ++ Sbjct: 145 RAGAKLVGDYLAKQLKAGDKVGIIEGVSTTFNAQQRTLGFQDAMKAANINVVGVQSGQWE 204 Query: 191 RIKGLNVMQNLLTAHPDVQAVFAQNDEM-ALGALRALQTAGKSDVMVVGFDGTPDGEKAV 249 KG V +L HPD+ A+ A ND M V VVG+D + + Sbjct: 205 IEKGNTVAAGMLREHPDLVALLAGNDSMALGAVAAVRAAGKAGKVQVVGYDNINAIKPML 264 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 DG++ AT Q + G+E A K L + QA+ P ++K Sbjct: 265 ADGRVLATADQYAAKQAVFGIEMALKALAAKTPQAQLPAEVK 306 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 9/268 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I ST + + V+ + K A+ GY L++ ++ +N K++ +V+DL + +++I Sbjct: 70 IGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDVEDLIAQKCDLIVI 129 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKG----EVVSHIASDNVLGGKIAGDYIAKK 144 P D++AV A + A IPVI +D Q G + ++ I SD G+ ++ Sbjct: 130 VPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIRSDQYQQGQGCAEWTVGH 189 Query: 145 AGE-GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLT 203 G+ V+E+ G G S A+ R GF + VA H + Q ++ R V+QN+ Sbjct: 190 VGDKDTTVLEITGNPGQSDAQNRSRGFNEYVADHSNIKVIQQNGEWSRATAQEVVQNVAQ 249 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAG---KSDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 + ++ +DEMALGAL L+ AG DV +V DG + A+ ++ A I Sbjct: 250 SGQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVDGQKEALDAIKADEIGAIITC 309 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPV 288 P + G + +K G++++ +Y V Sbjct: 310 TP-KGGDVLFDCINKYFAGDELEEEYFV 336 >UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZW4_MYCS2 Length = 372 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 5/271 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I V L++PF V K A++ +LG + V+ + ++ ++ ++Q +GT L++ Sbjct: 94 ITFSVEGLSHPFLVKQKQLAEETGKRLGAQVNVISANDDVNQQFNDIQTAIAQGTDALMM 153 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK--KAG 146 P + + +K A A IP + E S + + G+ G+++ + K Sbjct: 154 MPATTQGLDAVLKQAEAAQIPYFFSQKGMLGVEPASQVLAPYSNEGQQLGEWVVEHYKGQ 213 Query: 147 EGAKVIELQGIAGTSAARERGEGFQ-QAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAH 205 E KV + GI G ++ R F + + FNV+A+QP ++ R QN+L A+ Sbjct: 214 EDVKVAIISGIPGDQSSDARVNSFLLPLLRSCNFNVVANQPGNYRRGDSEKAAQNMLAAN 273 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 PD+ +F NDE ALG + AL+++G+ V VVG DG D A+ G+ AT+ P Sbjct: 274 PDIDLLFGANDEAALGGIAALKSSGRQGVDVVGLDGQTDMFAAIQSGQALATVIHKP--T 331 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 VE A L+G+ V +D LV K+ Sbjct: 332 AGIVVEEAVDYLRGKPVPEYRVLDEDLVTKE 362 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 + LV+ D Q N +++ V++ + IL ++ ++ + AV IPVI LDR+ Sbjct: 81 FKLVIADGQANDNTQVSQVENFLTQQVDILFVSAFEAAPLTPAVSAVYDKGIPVIELDRR 140 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 T + S ++ DN AG Y A +G V L+G+ +S A ER EGF+ ++ Sbjct: 141 TTGEKFTSFVSGDNRAIAHEAGLYAASLLPDGGDVAILEGLPSSSPAIERLEGFKAGIST 200 Query: 177 H-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDV 234 + K ++A QP D+ + K + V +L AHPD++ V+ ND A GA A++ AGK V Sbjct: 201 NPKVKIIAVQPVDWMQDKAVEVFSAMLQAHPDIKLVYTSNDLAAAGAYIAVKQAGKLGQV 260 Query: 235 MVVGFDGTP---DGEKAVNDGKLAAT 257 ++G DG P G +AV +G+ AT Sbjct: 261 KIIGTDGLPGPSGGIRAVAEGQWTAT 286 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 4/228 (1%) Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 L + P++++A VQ L +G L+INP +S + A + I I +DR E Sbjct: 58 LVTAKEPSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGINSEE 117 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FN 180 +IA DN + G +AG YIA+K G V+ ++GI T ER E F++A+ + Sbjct: 118 YNVYIAGDNYMYGYLAGKYIAEKLGGKGNVVVIEGIPST-INTERVEAFKKALEPYPNVK 176 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGF 239 ++A QP + R K +MQ LLT P++ AV+ +D+M G L AL+ AG+ ++++VG Sbjct: 177 IIAQQPGYWSREKAFEIMQTLLTKFPNIDAVWTGDDDMLHGVLLALKQAGRDKNIVLVGG 236 Query: 240 DGTPDGEKAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 + K + DG L P + + + A LKGE + Y Sbjct: 237 ACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGEHLNGFY 284 >UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG89_9CLOT Length = 349 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 129/252 (51%), Gaps = 8/252 (3%) Query: 40 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 99 FF + G ++ G +V ++ + + A +L ++D +G ++ NP+D+ A A Sbjct: 78 FFDACYSGVEEVVKANGDEIVHVEGKADSAYQLGVIEDFISQGCDLVFYNPSDAAASAAA 137 Query: 100 VKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIA 158 VK N A IP++ D + +V + SD+ G+IAG+ + K EG KV L Sbjct: 138 VKALNDAGIPIVNFDSAVSDLSKVNCFVVSDSYSCGQIAGEELIKNHPEGGKVAVLD-FP 196 Query: 159 GTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDE 217 ++AA +R +GF V A F V+A A KGL VMQ+LL AH D+ AVF NDE Sbjct: 197 ASAAAADRAKGFVDTVTADGLFEVVAQMDAGAKPEKGLTVMQDLLQAHSDLTAVFCINDE 256 Query: 218 MALGALRALQTAGKSDVMVVGFDGTPDGEKAVN----DGKLAATIAQLPDQIGAKGVETA 273 A GA A+ TAG + + + P+ + A+ DG T AQ P IG K E A Sbjct: 257 CAQGAYSAITTAGDK-IEIYSVNAGPEAKAAMTKDGVDGIWKCTAAQSPIGIGQKSAEVA 315 Query: 274 DKVLKGEKVQAK 285 K+L GE +++ Sbjct: 316 YKILNGESYESE 327 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 150/297 (50%), Gaps = 27/297 (9%) Query: 4 KKLATLVSAVALSATVSANAMAKDTIALV------VSTLNNPFFVSLKDGAQKEADKLGY 57 KKLA ++ +A S S + AKD + V V + + ++LKD K + G Sbjct: 3 KKLA--ITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEG- 59 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ- 116 +VLD+ N A+++A VQDL + +++ PT+ A+ V+ A Q IPVI + Sbjct: 60 --IVLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNI 117 Query: 117 ATKG-EVVSHIASDNVLGGKIAGDYIAKKAGEG----AKVIELQGIAGTSAARERGEGFQ 171 + KG E ++ + N + G Y A+ EG +V+++ G G A R +GF+ Sbjct: 118 SEKGQEFITAFSGPNTI---TQGQYAAELMCEGLNGKGQVVQITGQPGYQTAINRQKGFE 174 Query: 172 QAVAAHK--FNVLASQPADFDRIKGLNVMQNLLTAH-PDVQAVFAQNDEMALGALRALQT 228 ++AA +++ SQP D++R K VM+N +T + V+A +D M +GAL A++ Sbjct: 175 DSLAADCPGVSIIDSQPGDWNREKSQRVMENFITRFGTKIDGVYAADDNMGIGALNAIKE 234 Query: 229 AGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP--DQIGAKGVETADKVLKGEKVQ 283 A ++ +VG G A+ +G ++ Q P D I A + K+L G+KV+ Sbjct: 235 ADLKNIKIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITM--KILNGDKVE 289 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKIL 86 I + NP+ V+ G + +G+ + + ++ +++ ++++ + + Sbjct: 82 IGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQVQLMENMITQDVDAI 141 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 +++ DS+ + V+ A A + V+T+ A + + D G +A K G Sbjct: 142 IVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAE-DTFLRTGVDYYESGYTMAKAVADKLG 200 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAH 205 K I L+G AG S A ER G ++ ++ ++ASQ A+F R +G++V +NL+ + Sbjct: 201 GKGKFIILEGPAGASNAIERLNGINTGLSEYEGIEIVASQTANFKRTEGMSVTENLIQQY 260 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 D+ AV A NDE ALGA++AL A SDV+V GFDG+ D AV +G + AT P Sbjct: 261 TDIDAVIACNDESALGAVQALTAANMSDVLVCGFDGSVDATNAVKEGTMFATYNTDP 317 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 141/277 (50%), Gaps = 10/277 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLG---YNLVVLDSQNNPAKELANVQDLTVRGTK 84 ++ + + L+NPFFV + GA+KEA K+G + V+ S + ++ +++ T Sbjct: 61 SVGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTD 120 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 +++IN DS + AV A QA VI +D A + ++ + + ++NV G+I+ YIA + Sbjct: 121 LIIINAADSKGIRPAVDQARQAGKVVIAVD-TAIEADIDATVTTNNVQAGEISCQYIADR 179 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QPADFDRIKGLNVMQNLL 202 V+ + G TS +R +G + +A + L S Q A+ R GL VM +LL Sbjct: 180 LKGKGNVVIVNGPPVTSVI-QRVDGCLKVLAKYPDIKLLSKDQNAEGSRDGGLRVMSDLL 238 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV--NDGKLAATIAQ 260 P + AVFA ND +G A A + D +VG DG P+ +A+ D AAT Q Sbjct: 239 VTFPKIDAVFAINDPSGVGVDLAANQAKRQDFFIVGVDGAPEAIEAIASGDSLYAATATQ 298 Query: 261 LPDQIGAKGVETADKVLKGEKVQA-KYPVDLKLVVKQ 296 P + ++ + +L G+K ++ + KL+ K+ Sbjct: 299 NPRGMTQTAIQVGNDILHGKKPESPNILIPAKLITKE 335 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 136/272 (50%), Gaps = 4/272 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + + ++ ++ F + DG +K A+K G L +D++ + AK++ V++ +G +++ Sbjct: 41 VGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQGKDVII 100 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQ-ATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 + P D+ A A ++ ++R + ++ S+ G + +Y+A+K G Sbjct: 101 VVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLPDGAYYVGSEEKKAGIMQMEYLAEKMG 160 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAH 205 ++ L G +R EG ++ + +L Q + R G+ +N L + Sbjct: 161 GKGNIVILMGKLDNEGTIKRTEGVEEIAKKYPDIKILDKQTGLWQRTDGMAKTENWLNKY 220 Query: 206 P-DVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 ++ A+ + ND+MALGA++AL+ +GK+ + V+G D TPDG A+ G ++AT+ Q D Sbjct: 221 GNEINAIVSNNDDMALGAVQALKDSGKTGIFVIGVDATPDGLAALAAGDISATVFQDADG 280 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G VE A K GE V + V KLV + Sbjct: 281 QGGGAVEVAKKAANGETVVKETWVPFKLVTPE 312 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 120/237 (50%), Gaps = 18/237 (7%) Query: 43 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM 102 S+K+ KE GY L+ +++ ++ ++ + ++ +P D ++ Sbjct: 63 SVKETLTKEN---GYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLRE 119 Query: 103 ANQANIPVITLDRQAT-KGE--VVSHIASDNVLGGKIAGDYIA------KKAGEGAKVIE 153 A +A IPVI +DR+ K E + + SD V G+ AG ++ + + ++ Sbjct: 120 AREAEIPVILMDRKINVKDESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVV 179 Query: 154 LQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 LQG AGT+A R +GF++ A H+ +N+L ADF KG M+ LL +P++ + Sbjct: 180 LQGTAGTTAMFGRTQGFEEIAAKHENWNILEQTNADFTTAKGEEEMRRLLNTYPEIDVLV 239 Query: 213 AQNDEMALGALRALQTAGKS-----DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 +QND+M GAL A+Q+AG++ D+ V+ FDGT + V G + + P Q Sbjct: 240 SQNDDMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVECNPYQ 296 >UniRef50_C4L3Z3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Z3_EXISA Length = 312 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 5/248 (2%) Query: 44 LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 103 L D A++ G+ + S+++ E + L RG + + + D + +++ A Sbjct: 52 LLDSFVHTANQKGFIPIPTTSEDSRVLEKEKLDSLIDRGVEAIFLTTLDDTFIQPSLERA 111 Query: 104 NQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE---GAKVIELQGIAGT 160 + NIP+I +DR V++ + SDNV G++A + IA K E +V+E++G Sbjct: 112 KRKNIPIIAIDRMIDHPSVLTSVVSDNVDIGRMAAEQIAAKYNELDRPIRVVEVRGTPKV 171 Query: 161 SAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEM 218 + +R G ++ H F ++AS ++D + M L AVF+ ND+ Sbjct: 172 RSTMDRSLGIREYEKQHGDDFQIIASITGNYDTFQAEIEMSRWLEEEIPFDAVFSHNDDN 231 Query: 219 ALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 278 G +RAL++ G +D +V DG D + +GK+ AT+ Q P+++ G + ++ L Sbjct: 232 TFGVVRALESHGLTDKTIVSVDGISDIYPLIQNGKVNATVVQSPNEMMEVGFKALEQHLN 291 Query: 279 GEKVQAKY 286 G+K+ Y Sbjct: 292 GKKIAKHY 299 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 6/255 (2%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 T NNP+F L +G ++ + G L+ D + K+ +Q++ G ++L +NP D + Sbjct: 42 TRNNPYFDVLNEGIEEVVEANGDILLTRDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWE 101 Query: 95 AVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIE 153 V A+ +A + +I +D + V+S I +DN G++ + K+ E AK++ Sbjct: 102 KVQPALDACREAGVGIINVDTVVKDRDSVISIIETDNYQAGQLCALDMMKRKDE-AKIVI 160 Query: 154 LQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 L TS R +GF +A H + V+ + A + +VM +LL + Sbjct: 161 LDNPIQTSITN-REQGFLDTIADNHNYQVVYREAAAGEIEVSSHVMADLLRRDISFDVIL 219 Query: 213 AQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 ND ALGAL ALQ A + + V++ G DG+PD + ++ G + T AQ P IG K E Sbjct: 220 GGNDPTALGALAALQQARREEGVLIYGIDGSPDFKAILDVGYVTGTSAQSPRSIGRKAAE 279 Query: 272 TADKVLKGEKVQAKY 286 TA + L GE V+ KY Sbjct: 280 TAYRYLDGEPVE-KY 293 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 136/265 (51%), Gaps = 5/265 (1%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 T NN F+ + D + + G LV D+ + K++ + + K + INP D Sbjct: 52 TTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKVKAIFINPVDWK 111 Query: 95 AVGNAVKMANQANIPVITLDRQATKGEVVSH-IASDNVLGGKIAGDYIAKKAGEGAKVIE 153 + A+ A A IPVI +D ++V+ + SDN G Y+ K + A ++ Sbjct: 112 QIKPALIAAKNAGIPVIVVDTPVYDDKLVACTVISDNYDAGVQCAKYLMKSKSK-ANIML 170 Query: 154 LQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 ++ S +R +GF + A K + ++A+ ++ K ++++ +L+ H +V A+ Sbjct: 171 IEHSKAKSGI-DRIKGFVDTIGASKQYKIVAAGDSEGQLDKTMSLVDDLIKKHTNVDAIM 229 Query: 213 AQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 A ND ALGAL AL+ G VMV G DG+P+ + ++DG + AT AQ P++IG E Sbjct: 230 ALNDPSALGALAALKENGLLGKVMVFGVDGSPEAKTMIHDGFMTATSAQFPNKIGHIAAE 289 Query: 272 TADKVLKGEKVQAKYPVDLKLVVKQ 296 A +LKG++++ V + L+ K+ Sbjct: 290 KAYDILKGKRLKRDVIVPISLISKE 314 >UniRef50_A4FMX8 Ribose ABC transporter binding protein n=2 Tax=Pseudonocardineae RepID=A4FMX8_SACEN Length = 323 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 145/276 (52%), Gaps = 13/276 (4%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK--ELANVQDLT-VRGTK- 84 +AL+ PF+VS++ A+++A GYN+ + P K + Q LT + GT+ Sbjct: 37 LALLTGMRGEPFYVSMECAAKQQAAAAGYNI----NAQAPEKFEQAEQSQMLTGIIGTRP 92 Query: 85 -ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGGKIAGDYIA 142 ++I PTD A+ ++ A + V+ +D + V+ ++SDN GGK+A +A Sbjct: 93 GAVIIAPTDDKALAAPLQQAKNNGVQVVEVDTALEDRSIAVASLSSDNYAGGKLAAQTLA 152 Query: 143 K-KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQN 200 + G+ V+ L AGTS ER +GF++ +A H +L +Q + + ++ Sbjct: 153 QLTGGKPGAVLALNTKAGTSTTDERAKGFEEEIAKHPNLRLLPTQYTENEPATAAQIVSA 212 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIA 259 L A+PD+ VFA N GA AL AG+S V +VGFD +P + + +G++ A IA Sbjct: 213 TLAANPDLVGVFATNLNTGEGAGTALANAGRSGQVQLVGFDASPKQVEDLRNGRVQALIA 272 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 Q P IG +GV+ A +KG+ V+ + ++ + K Sbjct: 273 QDPAAIGREGVDRAIAAIKGQPVERETRTNMIAITK 308 >UniRef50_D2PTU2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PTU2_9ACTO Length = 361 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 132/256 (51%), Gaps = 15/256 (5%) Query: 18 TVSANAMAKDTIALV--VSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 T SA + A + LV V +NP+ S G A +G L + K+ + Sbjct: 34 TASAGSCAPTEVKLVGQVRNESNPYEASWLAGGDAFAKSVGLTQQRLTYDGDSTKQQEQI 93 Query: 76 QDLTVRGTKILLIN--PT-DSDAVGNAVKMANQANIPVITLDRQATK------GEVVSHI 126 + TK L++N P DSD VK A++A ++T + + G+ +SHI Sbjct: 94 SQVLAGDTKCLVMNVLPNGDSDTT-PIVKGADRAGAYLVTQWNKPAELKPTDYGKWLSHI 152 Query: 127 ASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQ 185 + V G+ GD +A+ G +I LQG+ T+AA++R G Q ++ + +L Q Sbjct: 153 TYNGVESGQQIGDALAQAIGGSGGIIALQGVLDTAAAKDRFAGLQASLKKNTGVKLLDQQ 212 Query: 186 PADFDRIKGLNVMQNLLTAH-PDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTP 243 A+F R + L V + LLT H +V+ ++A ND+MALGAL ALQ AG++ V VVG D P Sbjct: 213 AANFSRAEALAVTKTLLTKHGANVKGIWAANDDMALGALEALQQAGRAGKVAVVGIDAVP 272 Query: 244 DGEKAVNDGKLAATIA 259 D AV +G + AT++ Sbjct: 273 DAVTAVKNGTMTATVS 288 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 145/276 (52%), Gaps = 10/276 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 T+ + TL+ P+FV + + A K G +V D+ + AK +NV+DL + ++ Sbjct: 148 TVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNVEDLLSKNVDAVI 207 Query: 88 IN--PTDS-DAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 I+ P +S AV NA+K A + P I +DR+ G S I DN G+ G+++A K Sbjct: 208 ISGGPLESAPAVLNALKSAGK---PAILVDRKFRSGTYASWIGPDNEAIGRQDGEFLAAK 264 Query: 145 AGEGAKVIELQ-GIAGTSAARERGEGFQQAVAAHKFNVL-ASQPADFDRIKGLNVMQNLL 202 G+ A V ++ G A S R G ++A+ A ++ ++ GL VM++LL Sbjct: 265 LGKDATVALIKGGPADNSIGLARTTGVKKALDAAGIRMVEGPDYGNWASDGGLTVMESLL 324 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAV-NDGKLAATIAQ 260 +H D+ AVF +ND M LGA RA++ AG+ ++++ G DG + +A+ G T Sbjct: 325 ASHKDLDAVFCENDAMCLGAQRAVKDAGREKEIVLAGVDGQAEALQAIAAGGNYLVTGLN 384 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 DQIG+ G++ A +L G+K + VD V K+ Sbjct: 385 DADQIGSLGLDRAVDILDGKKPEKDTVVDSPQVTKE 420 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 22/292 (7%) Query: 3 MKKLATLVSAVALSATVSANAMAKDT-----------IALVVSTLNNPFFVSLKDGAQKE 51 +KK A +AV L+A A + DT I L+V ++NPFF ++ GA++ Sbjct: 5 VKKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEA 64 Query: 52 ADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 A +G D+Q + A + + +G +++I+ D + + A++ A QA I VI Sbjct: 65 AASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVI 124 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 +D A + V + +D V G+ + Y+ ++ G V+ + G R+R G Sbjct: 125 AVDTPAKSADAV--VMTDAVQAGEKSCQYLFEQMGGKGNVLLVDGTP-LQTIRDRITGCN 181 Query: 172 QAVAAHKF---NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT 228 V KF V+ Q + DR GL V ++LTA PDVQ +F ND ALGA+ A+Q Sbjct: 182 NVV--KKFPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQGIFGMNDPSALGAVLAVQQ 239 Query: 229 AGKS-DVMVVGFDGTPD--GEKAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 A K+ V V G DG+P+ E + T Q P ++ K VE A ++ Sbjct: 240 AHKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNII 291 >UniRef50_B9KPX1 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B9KPX1_RHOSK Length = 321 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 130/241 (53%), Gaps = 6/241 (2%) Query: 61 VLDSQNNPAKELANVQDLT-VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ-AT 118 VL + N K + +++D+ R L++ P +S+ + + V+ +A I V +DR + Sbjct: 70 VLATAGNAGKMVNDIEDMVATRNISALVVLPFESEPLTSPVQAVKEAGIWVTVVDRGLSV 129 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 +G ++A DN G++AG+Y A+ G K++ L+GI T+ ER E F A+ Sbjct: 130 EGIEDLYVAGDNPGFGRVAGEYFAQHLESGKKIVVLRGIP-TTLDNERVEAFTAAIDGSG 188 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM-VV 237 VL Q +++R NVMQ+ L+ +P + AV+A +D+MA+GA+ A+ AG+++ M V+ Sbjct: 189 IEVLDMQHGNWNRDDAFNVMQDFLSKYPQIDAVWAADDDMAIGAMEAIAQAGRTEEMWVM 248 Query: 238 GFDGTPDGEKAVNDG--KLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G G + + + DG +L A + P QI TA K++ V ++ + +LV Sbjct: 249 GGAGMKEIIRRIADGDPQLPANVTYPPAQISTAIELTALKLVSSTPVSGRFIIGSQLVTP 308 Query: 296 Q 296 + Sbjct: 309 E 309 >UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR03_9FIRM Length = 332 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 130/252 (51%), Gaps = 6/252 (2%) Query: 36 LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDA 95 ++NPF+ +LKD Q ++ G L++ D + ++ +Q+L + + P D Sbjct: 59 MSNPFYATLKDSVQSALEEQGDKLLIKDPAGDAERQNTQIQELIEEDVDAVFLCPVDWKK 118 Query: 96 VGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 + A+ +A+IPVI LD + + G+V + + SDN G + G+ + ++ +G +V+ + Sbjct: 119 IEPALDALEEADIPVINLDTKVYESGKVAAFVGSDNRNAGYVCGEDLVERKPDGGQVVIV 178 Query: 155 QGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL-NVMQNLLTAHPDVQAVFA 213 + + S ER GF++AV+ F V+ D + GL + +L +PD+ A+ Sbjct: 179 ENLNVNSVC-ERITGFEEAVSKGAFEVVKRIQTGND-VSGLKQQVAQVLAQNPDLDAIMC 236 Query: 214 QNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV--NDGKLAATIAQLPDQIGAKGVE 271 +D+MA A+ AG+ V V DG+P +KA+ + G + AQ P +G K V+ Sbjct: 237 GDDQMAEQVREAITEAGQEKVYVYSVDGSPASKKALVEHTGGMMGIGAQSPINLGKKAVK 296 Query: 272 TADKVLKGEKVQ 283 A+ VL GE + Sbjct: 297 IANAVLNGEDYE 308 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 136/261 (52%), Gaps = 13/261 (4%) Query: 32 VVSTLNNPFFVSLKDGAQKEADKL---GYNLVVLD-----SQNNPAKELANVQDLTVRGT 83 V N ++ +LK+G + K GYN + LD + + +L+ V+D+ + Sbjct: 76 VAKAFENEYWRTLKEGEELGTQKFKENGYN-ITLDMKSAQGEGDEQGQLSIVEDMINKKY 134 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 LL++P + V+ A + NIPVI ++ K + + ++ G++A ++I+K Sbjct: 135 TALLLSPISDGNLVPGVEKAKKNNIPVINVNDGIIKNADI-FVGPKAIMNGELAAEWISK 193 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPADFDRIKGLNVMQNL 201 K G +V + G+ AAR+R GF+ + ++ ++ Q AD+DR K ++ + Sbjct: 194 KIGGEGEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVKIVEKQNADWDRAKAKDLAEIW 253 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQL 261 + +P+++A+F ND MALG A+ A K D++VVG DG + +++ G++ AT+ Sbjct: 254 IKKYPNLKAIFCNNDVMALGVQEAV-NASKRDILVVGVDGIKEAYESIRKGEMDATVDSF 312 Query: 262 PDQIGAKGVETADKVLKGEKV 282 P G VE A + L G+++ Sbjct: 313 PLYKGQIAVEMALRSLGGQQL 333 >UniRef50_C2AKV1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Actinomycetales RepID=C2AKV1_TSUPA Length = 336 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 131/250 (52%), Gaps = 7/250 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKE--LANVQDLTVRGTKIL 86 + L+ T NPFFV +++ A+ +AD G NLV L + + E +A +++L +G K + Sbjct: 40 VGLITKTDTNPFFVKIREAAKAQADAKGANLVALAGKFDGDNEGQVAAIENLVSQGVKGI 99 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYI-AKK 144 LI P S + A+K A A + VI LD + V + A+DN G++ G ++ Sbjct: 100 LITPNSSTGILAAIKKARDAGVVVIALDTATEPADAVDATFATDNTEAGRLQGAWVKGAL 159 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVA--AHKFNVLASQPADFDRIKGLNVMQNLL 202 AG K++ L G AG++ + R +GF Q + + + ++ + D+ K M+NLL Sbjct: 160 AGAAPKLLMLDGTAGSTVSDFRHKGFLQGIGLTENAPEIAGTENTNGDQTKAQTAMENLL 219 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG-FDGTPDGEKAVNDGKLAATIAQL 261 PD A++ N+ A G +A + AGK+ + +G DG+ G V G + AT+ Q Sbjct: 220 QRVPDANALYTINEPAAAGGYQAAKKAGKAAQLTIGSIDGSCAGVDNVKKGMIGATVLQF 279 Query: 262 PDQIGAKGVE 271 P ++ +GV+ Sbjct: 280 PAKMAQQGVD 289 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 4/219 (1%) Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + V D + +P + + + +++ P D +A A+ A +A +PVI + + Sbjct: 63 ITVFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVIVSALKTS 122 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + I D+ GG+I + +AK+ G ++ ++G G SA ER G + AH Sbjct: 123 SKNYTASIIVDDREGGRIIAEEMAKRLPSGGNLVLMEGPIGQSAQIERRAGVDAGLEAHS 182 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG--KSDV 234 +LA + ++ R +G +M+N L+A+PD + V A+NDEMALGA+ A++ A S V Sbjct: 183 NLKLLADKSGNWSRAEGQALMENWLSAYPDQINGVLAENDEMALGAIEAMKAANVDLSKV 242 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETA 273 V+ DG PD ++AV +G++A T+ + G V+ A Sbjct: 243 PVIAIDGIPDAKRAVENGEMAVTLYKYARAEGQGAVDLA 281 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 13/253 (5%) Query: 52 ADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 ++K G+ L+ D+Q ++ V+D + ++ I P + A A+IPVI Sbjct: 76 SEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGWETVLGEAKDADIPVI 135 Query: 112 TLDRQATKGE---VVSHIASDNVLGGKIAGDYIAKKAGEGAK-----VIELQGIAGTSAA 163 +DR + + SD G A +++ E K V+ LQG G+SA Sbjct: 136 IVDRMIKVSDDSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKTDKQNVVVLQGTIGSSAE 195 Query: 164 RERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGA 222 R +GF + + FN+LA Q +F + KG VM++ L + D+ V AQND MA GA Sbjct: 196 IGRTKGFGDTIKKYDNFNILAQQTGEFTQAKGQEVMESFLKQYNDIDVVIAQNDNMAFGA 255 Query: 223 LRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG 279 + AL+ AGK+ DV +V FD K++ G + ++ P G + E A K++ Sbjct: 256 IDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDMNVSVECNPLH-GPRVAELAKKLMND 314 Query: 280 EKVQAKYPVDLKL 292 EKV+ VD K+ Sbjct: 315 EKVEKIQYVDEKV 327 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 125/241 (51%), Gaps = 12/241 (4%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKIL 86 I +++S+ +N F+ ++K ++ A+ LG + V D++++ +L + + G + Sbjct: 92 IGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDAI 151 Query: 87 LINPTDSDAVGNAVKMANQANIPVITL----DRQA---TKGEVVSHIASD-NVLGGKIAG 138 +++P D + + AN+A IPVI L D +A G + I + G +A Sbjct: 152 ILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEEQGSTVAN 211 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKGLNV 197 D I++ +G KV L G+ G + R G + ++A+Q D+D K Sbjct: 212 DMISRME-DGGKVAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQACDWDTEKAYEA 270 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAAT 257 +++LTAHPD++ +FA ND MAL A++ALQ G DVMV G D T D + A+ DG + + Sbjct: 271 TKDILTAHPDLKGIFACNDNMALAAVQALQEMGNKDVMVYGVDYTTDAKAAIEDGTMMGS 330 Query: 258 I 258 + Sbjct: 331 M 331 >UniRef50_UPI0001B55A58 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55A58 Length = 331 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 134/281 (47%), Gaps = 5/281 (1%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK-ELANVQDL 78 +AN+ +ALV PF++S++ GAQ+EA KLGY L V Q A + + V L Sbjct: 36 AANSANSKKLALVPGVQAEPFYISMQCGAQEEAKKLGYELTVQAPQKFDATMQTSIVNSL 95 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ-ATKGEVVSHIASDNVLGGKIA 137 LL+ PTD A+ ++ ++ +D K VS ++SDN GGK+A Sbjct: 96 GSNPPAALLVAPTDDQAMLAPIQQVKNRGAKIVEVDTSLKDKSVAVSSVSSDNAEGGKLA 155 Query: 138 GDYIAKKAGEG-AKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGL 195 +AK G+ V+ L IAGTS R +GF+ + H + Q + + Sbjct: 156 AQTMAKLVGDKPGSVLILDTIAGTSTTAARAKGFEDELKNHPNLKSVGIQFTQNEPEQAA 215 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKL 254 + + L + PD+ +FA N GA L+ AGK V +VGFD +P + G+ Sbjct: 216 SKVTAALVSTPDLVGIFATNLNTGEGAATGLRNAGKIGKVNLVGFDASPSEVDGLKKGEY 275 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A IAQ P QIG KGV+ A L+G+ + L + K Sbjct: 276 QALIAQDPAQIGTKGVDQAVAALEGKPTERDLTAQLHSITK 316 >UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional regulator, putative n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMJ9_9PROT Length = 307 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 144/298 (48%), Gaps = 18/298 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKD---TIALVVSTLNNPFFVSLKDGAQKEADKLGY-- 57 MKK+ + ++ L++ ++A + K TIA TLNN + LK + E L Y Sbjct: 1 MKKIFIFIVSILLASILNAGELDKSKTYTIAFAQDTLNNDY--RLKQVKEVEKALLKYPN 58 Query: 58 -NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 + D++ + + ++ ++D +G +L+ +P D D+ + A ++NIPV+ + R+ Sbjct: 59 IRFIYSDAKASASMQVKQIEDFISQGVDLLMTSPYDEDSTRQVISKAYKSNIPVVLVSRR 118 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 + S+I +N K A Y+ KK V+ L+G+A T+ R R EGF + V Sbjct: 119 VKGNDFTSYIHPENRQIAKDAAKYLVKKMNYKGTVLLLKGVAKTNVERMRTEGFFEVVNK 178 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDV 234 + + + A++ R + + LL+A AV +Q+D M +G + G S + Sbjct: 179 YPNIKVIERTANYLRRDAIIEVDKLLSAGQKFDAVMSQSDSMLVGVRMVFKKYGIKPSSL 238 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETAD---KVLKGEKVQAKYPVD 289 + VG D + A+ DG+ ++ + AK E+AD K+L GE V + +D Sbjct: 239 VTVGIDYIKPAQDAIRDGEQNSSFVY---SLCAK--ESADIAIKILSGESVAKEIKLD 291 >UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=B5WJX6_9BURK Length = 338 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 138/270 (51%), Gaps = 20/270 (7%) Query: 6 LATLVSAVALS----ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 L T+V AL+ A+ SA A AK T+A + +L+ ++ + G ++ A +LG N V Sbjct: 16 LTTMVVCSALACVAMASQSALAQAKQTVAYIAPSLDISYWQWVAYGVRERAKELGMNYVE 75 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT--LDRQATK 119 S+N+PAK++ NV+ RG +++ P S + +++ + ++P+ + QA + Sbjct: 76 FTSENSPAKQMDNVKTALTRGVSAIVMGPVSSTSTPPVLRLLKEKSVPIAFAGIGPQAGQ 135 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGE--GAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + S + ++N GK G Y+ K A E G K+ L A++ +G +++ AA Sbjct: 136 TDYTSAVTANNYDTGKAQGSYVCKLAKERGGNKIAMLSLPQDRVNAQKYMKGAKESFAAD 195 Query: 178 KFNVLASQPADFDRIKGLNVMQ------NLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 +++ GL V + ++LTAHPDV+A++ DE A G+ +ALQT G Sbjct: 196 GCDLV-----QVLETHGLTVNEAVSQANDILTAHPDVKAIYGMYDEAATGSAKALQTRGL 250 Query: 232 S-DVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 + V VV DG+P K + +G + Q Sbjct: 251 TGKVAVVTADGSPTTIKLLREGAIQGIFLQ 280 >UniRef50_C1B1U9 Putative ABC transporter substrate-binding protein n=1 Tax=Rhodococcus opacus B4 RepID=C1B1U9_RHOOB Length = 369 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 128/265 (48%), Gaps = 24/265 (9%) Query: 33 VSTLNNPFFVSLKDGAQKEADKLGYNLVVL----DSQNNPAKELANVQDLTVRGTKILL- 87 V +L NP+ + G++ A+ LG L V+ DSQN L+ +Q + G +LL Sbjct: 56 VRSLTNPYEAAWVQGSRAYAESLGIELKVIVYGGDSQN----ALSQLQSVLAAGKTVLLN 111 Query: 88 INPT---DSDAVGNAVKMANQANIPVITLDRQA------TKGEVVSHIASDNVLGGKIAG 138 INP D+ A+ AV+ N V + A S+++ D V G G Sbjct: 112 INPNTSADTPAIVRAVQ--NSGGCAVTQWSKPADLHPWDVGNGWASYVSYDGVQQGADTG 169 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNV 197 + G VI LQG+ ++ R +GFQQA+A +L QPADFDR K Sbjct: 170 KALVDSLGGTGGVIALQGLLANDISQTRFQGFQQAMAGQSGVTLLDDQPADFDRNKAYTT 229 Query: 198 MQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGKSDVMVVGF--DGTPDGEKAVNDGKL 254 Q LL + D V ++A D MALGAL+A++ AG++ + + D TP+G A+ DG+L Sbjct: 230 TQTLLNKYGDQVNGIWAATDSMALGALQAVREAGRAGEIKIASAADATPEGLGAIADGEL 289 Query: 255 AATIAQLPDQIGAKGVETADKVLKG 279 +T P GA G+ + + G Sbjct: 290 LSTYTTDPYFNGAMGLAICYQAMTG 314 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 129/253 (50%), Gaps = 13/253 (5%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV----LDSQNNPAKELANVQDLTVRGTK 84 + L+ T +NP+FV L++ AQ +ADK G L+ D N ++ ++++ +G K Sbjct: 38 VGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAFDGDNE--GQVTAIENMVGQGVK 95 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE--VVSHIASDNVLGGKIAGDYIA 142 +LI P S V +A+K A A + VI LD AT E V + A+DN G G ++ Sbjct: 96 GILITPNSSTGVLDAIKKARDAGVVVIALDT-ATDPEDAVDATFATDNKAAGVAQGKWVK 154 Query: 143 KKAGEGA-KVIELQGIAGTSAARERGEGFQQA--VAAHKFNVLASQPADFDRIKGLNVMQ 199 G +V+ L G G + R +GF + + + ++ + + D+ K M+ Sbjct: 155 AALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLTDNSPEIVGQENTNGDQTKAQTAME 214 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG-FDGTPDGEKAVNDGKLAATI 258 NLL P V A++ N+ A GA +A+Q G++D + +G DG+ G V GK+ AT+ Sbjct: 215 NLLQRAPGVNALYTINEPAAAGAYQAIQAVGRADQVTIGSIDGSCTGVADVKAGKIGATV 274 Query: 259 AQLPDQIGAKGVE 271 Q P ++ GV+ Sbjct: 275 MQFPAKMAELGVQ 287 >UniRef50_D1XHS5 D-ribose transporter subunit RbsB n=1 Tax=Streptomyces sp. ACTE RepID=D1XHS5_9ACTO Length = 319 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 17/260 (6%) Query: 40 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 99 F L+ + AD L +S NP EL+N++D+ R L++ + DA+ Sbjct: 48 FHTCLQASVKDTADARDAKLYTANSHQNPGTELSNIEDMIARDVDALIVQTVNVDALKGD 107 Query: 100 VKMANQANIP-----VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 + A ANIP V+T D G VV + G++ ++ K A G +E+ Sbjct: 108 IAKARSANIPIFLTSVVTDDPSDILGAVVVDLRQ----VGELDAGFVEKDAAGGR--VEV 161 Query: 155 QGIAGTSAARER--GEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 IAG A GF +A+ + V+A+QP F+ K +V +N++ AHP ++ F Sbjct: 162 GVIAGAPGAASDLLVNGFTEALPDNA-KVVANQPGMFNAAKAQDVAENMIQAHPKLRYAF 220 Query: 213 AQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVET 272 N+EMA GAL+A Q AG +DV +V +GT G AV DG+ AAT+A G V Sbjct: 221 VANEEMAFGALKAFQAAG-ADVRIVTVNGTDHGLAAVKDGRFAATVANSAMTTGKIAVTN 279 Query: 273 ADKVLKGEKVQ--AKYPVDL 290 +L +K A P+ L Sbjct: 280 TISLLDRKKTDKIAMTPISL 299 >UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FY95_ACICJ Length = 329 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 127/260 (48%), Gaps = 4/260 (1%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKIL 86 TIALV +PF+++++ GA EA KLG +L+ S +P ++ +Q L + L Sbjct: 37 TIALVPGIATDPFYITMQHGAAAEAKKLGLHLIWQGGSSFSPETQIPALQALLAKHPAAL 96 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKA 145 L+ PT+ A+ N ++ A IPVI++D + ++ S I S+NV GG A IA A Sbjct: 97 LVAPTNEKALINPIRQFIAAGIPVISVDTTISDTAILKSRITSNNVQGGASAARAIAGFA 156 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA 204 V + G S R +GF + +K V+A + D K Q LL Sbjct: 157 HGKGDVAVINVKPGISTTDARQKGFLAQMKHYKGMKVVAIEYDDDSPTKAFTEAQLLLLK 216 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 +P ++ +FA N G +A+ AGK V VVG+D P K + G ++ I Q P Sbjct: 217 YPHLKGIFATNVFSGEGVGKAVVAAGKKGKVDVVGYDAEPGEVKLLKQGVISTLIVQRPA 276 Query: 264 QIGAKGVETADKVLKGEKVQ 283 + G GV+ A +L G+ Q Sbjct: 277 EEGRLGVKYAYDILTGKSAQ 296 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 38 NPFFV----SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS 93 NPF S++D A+ + L+ ++ +N ++++A+V+++ +G + L+I P DS Sbjct: 68 NPFRAGETKSVRDAAKAFHVR---RLIYTNAHSNQSRQVADVENMINQGAQALIIAPLDS 124 Query: 94 DAVGNAVKMANQANIPVITLDRQ---ATKGEVVSHIASDNVLG-GKIAGDYIAKKAGEGA 149 + A A +IP++TLDR+ + + +S + S+ G+I +AK G A Sbjct: 125 TGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYLSFLGSNFYFKQGEIDARELAKATGGHA 184 Query: 150 KVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDV 208 V E+QG G S R +GF + A+ ++ Q ++ VM +L AHP+V Sbjct: 185 MVAEIQGAYGNSVEVARTKGFAAGLKAYPGMKIVTEQTGNWFTTDAQKVMSQILLAHPNV 244 Query: 209 QAVFAQNDEMALGALRALQTAGKS--DVMVVGFDGTPDGEKAVNDGKLAA 256 AV+AQ D MA GA+ AL+ AGK V +V DGT G + + DG + A Sbjct: 245 NAVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTRQGVQDIVDGWIYA 294 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 129/263 (49%), Gaps = 12/263 (4%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K +V+ + N FFV + +G K A+ G ++ + N +++ +++ +G Sbjct: 59 KIVCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFDNQISLIENFIEQGVDC 118 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +L++P DS+ + ++ A+ A IP IT+ Q + + +D +I + AK Sbjct: 119 ILVDPLDSEGLKPVIEKASAAGIPTITMAGQVDVETNYTTVYNDEE-NTRIIAEMTAKMI 177 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAH 205 GE K L G G + R +G+ + + + QP ++D G+ Q+L+ A+ Sbjct: 178 GEEGKTALLYGNKGNLVSDLRQKGYYAGMEKYPNITVVEQPTNWDPPTGMKAAQDLIAAN 237 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 PD++A+ +D + L A +A++TAGK +++V +DG D KAV G+ +T+ + Sbjct: 238 PDLKAIHCISDAVTLAAYQAVKTAGKEGEIIVTSYDGNDDALKAVESGQFTSTVLTGAKK 297 Query: 265 IG----------AKGVETADKVL 277 G A GV A+K+L Sbjct: 298 TGYWNIQVALQLASGVRPAEKIL 320 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 125/214 (58%), Gaps = 5/214 (2%) Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA-TKGEVVSHIASDNVLG 133 +Q+ +G L+ TD+ + + + A I V+ +D + E V A+DNV Sbjct: 95 LQNFITQGVDGLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPVFATDNVAA 154 Query: 134 GKIAGDYIAKKAGE-GAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDR 191 + A +Y+ ++ GE G KV + GT+ R EGF+ + + + ++A Q ++ + Sbjct: 155 AERATEYLVEQLGEDGGKVAFIPFQPGTATNDTRTEGFKNVLKENPQVKLVAEQSSESNY 214 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVN 250 + L V +++LTAHPD+ A++A N+ LGA A+++AGK+ ++++VG+D PD KAV Sbjct: 215 NRALQVTEDILTAHPDLDAIYAANEPGVLGAAEAVRSAGKAGEIIIVGWDTAPDELKAVR 274 Query: 251 DGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQ 283 +G ++A IAQ P ++G GV A K+++ GE+V+ Sbjct: 275 EGVVSALIAQNPFRMGYDGVNAAVKMIRTGEQVE 308 >UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Rhizobiales RepID=B5ZNU3_RHILW Length = 329 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 18/309 (5%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 ++ + L A ++ + + A D TI ++V + ++ + GA+K LG N+ Sbjct: 8 LSRRAFTALAGAAVIATAMPVTSFAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNV 67 Query: 60 VVLDSQ--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 L +Q ++ +++ +++ ++I+PT+ A+G + A + ++P+I +D A Sbjct: 68 PELGAQAESDINGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAK-SVPIIGIDSGA 126 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIA--------KKAGEGAKVIELQGIAGTSAARERGEG 169 S + +DNV GG+IA D +A K+ GE ++ L + G + +R EG Sbjct: 127 DSKAFKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGE---IVILTNLPGVGSLEQRREG 183 Query: 170 F-QQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 F Q H V+A + D GLN+M +L+TA+P + VFA N +A G +A+ Sbjct: 184 FLDQIKTKHPGLKVIADKYGDGQATTGLNMMTDLITANPKLVGVFASNLILAQGVGQAIA 243 Query: 228 TAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 D + V+GFD + DG +A + Q P ++G G++TA V KGEKV+A Sbjct: 244 ENKLGDKIKVIGFDSDDKTVGFLKDGAIAGLVVQDPYRMGYDGIKTALAVSKGEKVEANV 303 Query: 287 PVDLKLVVK 295 LV K Sbjct: 304 DTGANLVTK 312 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 12/290 (4%) Query: 2 NMKKLATLVSAVALSATVS-ANAMAKDT-IALVVSTLNNPFFVSLKDGAQKEADKL-GYN 58 NM++L L +A L A V+ A A D IA++V T N+ ++ +++ GA K+ Y Sbjct: 22 NMRRL--LCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYT 79 Query: 59 LVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 + S++ A ++ V D + +++ P+D DA+ +++ A +A+IPV+ +D Sbjct: 80 MTFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSM 139 Query: 117 ATKG---EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 + S +A+DN G+ G + G+ KV + + G + R GF++ Sbjct: 140 ISDSGAKYYQSFLATDNEAAGEALGKEMVDHVGQTGKVAIMSYVPGVGSEIGRVGGFRKY 199 Query: 174 VAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 +A H ++ + +N ++L ++PD++ +FA N+ A+G RA+Q AGKS Sbjct: 200 IAEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFAANEMTAVGVGRAIQQAGKS 259 Query: 233 -DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK 281 + + FDG D + V G Q +GAKGVETA VL G K Sbjct: 260 GKLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTGAK 309 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 10/275 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKE--LANVQDLTVRG-TKI 85 I LV+ + NP+F L +GA + + G +L + + + A E + + ++ + Sbjct: 48 IVLVMKSPTNPYFSELANGASRAQLETGIDLSIKVAHEDDALEQQIRLIDEVIAKHQADA 107 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQ------ATKG-EVVSHIASDNVLGGKIAG 138 ++I PTDS + + A +A I VI + + A G VV I+ DN Sbjct: 108 IVIAPTDSIRLVPVLARARKAGIHVINIGNRLEPRIVALYGMPVVPLISIDNASAAYQVA 167 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVM 198 +A+ G+KV ++G+ GT+ R+R EG QA + V+A Q A + + V Sbjct: 168 GKLAEGLPRGSKVAIIEGLLGTNNTRQRTEGALQAFSEAGLRVVAKQSARWKGDEAYQVT 227 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 LL +PD++A+F ND MALGA R L+ G + V + GFDG + A++ +L ATI Sbjct: 228 AQLLRDYPDLRAIFCSNDMMALGAARYLREKGITGVRLAGFDGITEARSALHQRQLVATI 287 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 Q + G V A + G + + VD +L+ Sbjct: 288 DQHASEQGYLAVRLAVDAIAGRPLAEETLVDTELL 322 >UniRef50_A5ZT86 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT86_9FIRM Length = 318 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 155/314 (49%), Gaps = 24/314 (7%) Query: 3 MKKLATLVSAVALSA-----TVSANAMAKDTIA------LVVSTLNN---PFFVSLKD-G 47 MKK+ + + + ++A T+S K+ I+ L+ +L N P+ + D Sbjct: 1 MKKIWKIWTVILVAAATVLLTISTQYSKKEEISTDSYQYLIGVSLPNVIEPWLNNFVDVF 60 Query: 48 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAN 107 +K + N++ D+ NP K++ +++ L G IL+++P SD++ + + A Q Sbjct: 61 TEKVSQDKKINVIFRDAAGNPEKQIQDIETLMEYGIDILIVSPDGSDSLSSVLSEAFQ-K 119 Query: 108 IPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE-GAKVIELQGIAGTSAARER 166 IPVI A + I SD+ G++AG+YI E K++ QG+ + +++R Sbjct: 120 IPVILTGVGAGTEDYTCLIKSDDQKIGRLAGEYILNNLYEKNKKIVVFQGVEESPVSKQR 179 Query: 167 GEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRA 225 +GFQ +V + D+ R + M++ L +H VFA ND+MA GA +A Sbjct: 180 LKGFQDSVQGTIPEEDITYYCGDWLRDRAELRMKDYLISHDSADIVFAFNDDMAYGAYQA 239 Query: 226 LQ---TAGKSDVM-VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK 281 Q GK ++ V GF+G G V+ G L ATI Q PD G E A K+L+G K Sbjct: 240 CQQYRIEGKVHLIGVDGFEGESAGLSLVDKGVLDATI-QTPD-FGGLSYEIARKLLEGNK 297 Query: 282 VQAKYPVDLKLVVK 295 V+ + +L+++ Sbjct: 298 VEKNIIIQPELILQ 311 >UniRef50_C5ENT7 Predicted protein n=3 Tax=Clostridiales RepID=C5ENT7_9FIRM Length = 627 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 145/278 (52%), Gaps = 10/278 (3%) Query: 11 SAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPA 69 +A A + +A A + IAL+ + +V+L +GAQKEA+ LG ++ + + + A Sbjct: 340 TASAAAGETTAKASKEYRIALITMDSIDQHWVTLNEGAQKEAEALGVSVTFMSPNTKDDA 399 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASD 129 +++ V + G + +++ DA+ +A+K A + + ++ +D A + + ++D Sbjct: 400 QQIECVNNAVAGGYEAIMVAANGPDAISSALKEAQSSGVKIVYVDSPANV-DAEATFSTD 458 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQ-GIAGTSAARE----RGEGFQQAVAAHKFNVLAS 184 N G+ AG+ + K A E A V GI +AA + R EGF+ A F +L + Sbjct: 459 NKAAGRTAGEEMLK-ALEAAGVTSGSIGIINVNAATDSCVMREEGFRSAFEGKGFTLLET 517 Query: 185 QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPD 244 Q + D K ++ +N +T V +F N+ GA A++ +GK ++ VGFD + Sbjct: 518 QYGEGDAAKSQSIAENYIT--QGVVGIFGCNEGSTTGAGNAIKASGKDGIIGVGFDKSDA 575 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 ++DG L T+AQ PD +G+KGVE K L+G+ + Sbjct: 576 ILGLIDDGYLLCTMAQNPDVMGSKGVEACVKALEGDSL 613 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 132/262 (50%), Gaps = 8/262 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL-DSQNNPAKELANVQDLTVRGTKILL 87 IAL+ + +V+L +GAQK A +LG + + + + A+++ V + G K ++ Sbjct: 67 IALITMDSIDQHWVTLNEGAQKAAGELGVTVQFMAPNTKDDAQQIECVNNAVSAGAKAII 126 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK--- 144 + DA+ +A+K A + + ++ +D A + + ++DN GK AG+ + K Sbjct: 127 VAANGPDAISSALKEAQSSGVKIVYVDSPANV-DAEATFSTDNKAAGKTAGEEMLKALSA 185 Query: 145 AGEGAKVIELQGI-AGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLT 203 AG + I + + A T + R EGF+ A F +L +Q + D K ++ +N +T Sbjct: 186 AGVTSGSIGIINVNAATDSCVMREEGFRSAFEGKGFTMLETQYGEGDAAKSQSIAENYIT 245 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 V +F N+ GA A++ +GK ++ VGFD + + DG L T+AQ PD Sbjct: 246 --QGVVGIFGCNEGSTTGAGNAIKASGKDGIIGVGFDKSDAIMGLIGDGYLLCTMAQNPD 303 Query: 264 QIGAKGVETADKVLKGEKVQAK 285 +G +GV+ A + GE + K Sbjct: 304 VMGYEGVKAAVAAVGGESLGGK 325 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 141/275 (51%), Gaps = 18/275 (6%) Query: 1 MNMKKLATLVSAVAL----SATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKE---A 52 MNM K A L + L +A A A AK IA +V +LN + V D A+ A Sbjct: 1 MNMTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALA 60 Query: 53 DKLGYNLVVLDSQNNPAKELANVQD--LTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 D L VLD + + + +N+ D +T + I+ I P D DA ++ A A IPV Sbjct: 61 DGTA-TLTVLDGRQDVLTQ-SNLFDTAITEKYDAIIFI-PVDIDAGNEPIERAKAAGIPV 117 Query: 111 ITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEG 169 + +K E+ ++I S++V G++ + KAG+ AKV+ L+G+ G SA +R EG Sbjct: 118 FGSNTVVSKTELYDAYINSNDVEAGEMLAKAVIDKAGKDAKVVVLEGMLGQSAQVQRLEG 177 Query: 170 FQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQ 227 + + +L A++ R + + +M+N LT+H D VQ V A+NDEMA+GA+ ++ Sbjct: 178 INNVLKQNSGVTILEQNTANWSRAEAITLMENFLTSHGDQVQGVLAENDEMAVGAIEGIR 237 Query: 228 TAG--KSDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 G + V G DG D +AV G+ +I Q Sbjct: 238 NHGLDPKKLPVAGVDGIKDALEAVKRGEQTMSILQ 272 >UniRef50_C2BT70 Ribose ABC superfamily ATP binding cassette transporter, ribose-binding protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BT70_9ACTO Length = 333 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 132/276 (47%), Gaps = 14/276 (5%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 +A+++ NP++V++K+G + E K G+ + V + ++ A +LA Q + + L + Sbjct: 53 LAVLLPNQTNPYYVAMKEGFEDEGSKNGFKVEVQIANDDDANQLAQAQAMLGKNPCALAL 112 Query: 89 NPTDSDAVGNAVKMANQANIPVITL----DRQATKGE---VVSHIASDNVLGGKIAGDYI 141 NP S+ VK AN +PV T+ D A K + VV ++ +DN GG + I Sbjct: 113 NPVKSEPAAAIVKAANDKGVPVFTVNISADPDALKAQGASVVQYLGADNAAGGAQMAEQI 172 Query: 142 AKKAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQ 199 K G + A I ER EGF++A+A + V+A + LNV Sbjct: 173 MKDLGADTAMEIGFVTEPDEVVVVERDEGFKKAIAKNPNAKVVAEVDGNVKLTDALNVTS 232 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIA 259 +L HP + +FA A GA+ A++ +GK D+ V GF + E ND A +A Sbjct: 233 EMLQGHPGISVIFASTGPAAQGAVEAVKASGK-DIKVYGFCAS---EMQTNDA-YPACVA 287 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 Q P+ G + V+ + G+KV+ LKL K Sbjct: 288 QEPEDYGRRTVQQIKTYIGGDKVEDNILRPLKLFTK 323 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 37 NNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAV 96 ++ F + LK+ ++A G ++ LD++ + ++ + + +++ D ++ Sbjct: 79 DDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIVLLAMDGTSI 138 Query: 97 GNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQG 156 V+ A +A IPV+ ++R +V+ + SD+ G++ G+++A AKV+ L G Sbjct: 139 VPTVEKAREAGIPVVIMNRDVNDPKVIGSL-SDDREAGRMQGEFMASHLPPNAKVVYLMG 197 Query: 157 IAGTSAARERGEGFQQAVAAHKFNV--LASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 214 + S A +R EGF++A + +V LAS + + +G+ M L+ P++ V A Sbjct: 198 ESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLWLSFFPEINGVVAA 257 Query: 215 NDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 NDEMALGA++AL+ A + + +V G D TP G AV G+L+ T+ Q Sbjct: 258 NDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAGELSQTVKQ 304 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 ++L D Q ++ ++ + ++ ++P +K A A IPV+ +DR+ Sbjct: 76 FDLKFSDGQQKQENQIKAIRSFIAQKVDLIALDPVVETGWDTVLKEAKDAKIPVVIVDRK 135 Query: 117 ATKGE---VVSHIASDNVLGGKIAGDYIAKKAGEGA--KVIELQGIAGTSAARERGEGFQ 171 T + + SD V GK A + + G+ A + ELQG G++A R +GF Sbjct: 136 VTVSDDSLYKCFLGSDMVAEGKKAAQILIDQFGKDATLNIAELQGTVGSTAMVGRQQGFN 195 Query: 172 QAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTA 229 A+ + ++ SQ DF R KG VM+ L + D + +++ ND+MA+GA++A++ Sbjct: 196 DAIKDCPNYKIIKSQTGDFTRAKGKEVMEAFLKSDGDKINVLWSHNDDMAMGAIQAIEEY 255 Query: 230 GK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ 283 GK D+ +V DG D +A+ DGK AT+ P +G + +E A +L G++V+ Sbjct: 256 GKKPGKDIFIVSVDGIKDIFQAMVDGKANATVECNP-LLGPQLLEVAKNILDGKEVE 311 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 145/295 (49%), Gaps = 10/295 (3%) Query: 11 SAVALSATVSANAMAK-DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPA 69 + A SA AN K IA+++ + + F V+L G + +A +LG + VLD++ + + Sbjct: 21 TGCAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKGDSS 80 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIAS 128 +++ +QD +G ++++P +S + V+M + A V T+D G++ + +A Sbjct: 81 TQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDS-VIPGDIADAAVAF 139 Query: 129 DNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPAD 188 DN GK+ + +AK GE V+E QG G A RG+GF + + + A Sbjct: 140 DNEKAGKLGAEALAKLMGEKGTVLEYQGAKGAYHAILRGKGFNDGIKQFPGIKVIGRDAQ 199 Query: 189 FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-------SDVMVVGFDG 241 + L++ + TA + +F+ NDEM G + L K + + +VG DG Sbjct: 200 WTADNALSLTVDNFTADSSINGLFSHNDEMVRGIVSGLSQINKDAPVGAANHIPLVGVDG 259 Query: 242 TPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 TP + +G AT+ Q P ++GA ++ +L G++V D KL+ K+ Sbjct: 260 TPLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPKMQLTDTKLITKE 314 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 4/274 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQ-KEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 K I N+ F L G Q EA++ +V +D++N+ ++A V+DL +G Sbjct: 45 KMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQGVD 104 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 ++ P D A V A QA +PV+ ++R + + E +++ SD++ G I + +A Sbjct: 105 AIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE-DAYVGSDSLQAGTIQMEEVAAV 163 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLT 203 K+ + G G +A R G +Q V + V+ + R KG +M++ + Sbjct: 164 LKGKGKIAIMNGQMGHTAQINRTLGNKQVVDQYPGMEVVIEGTGGWSREKGKELMESWIE 223 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV-GFDGTPDGEKAVNDGKLAATIAQLP 262 + AV A NDEMA+GA+ A + AG D +V G DGTPD ++ GKL ++ Q Sbjct: 224 SGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSKGKLTISVFQDA 283 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G G+E A K+ KGE + + + + K+ Sbjct: 284 KGQGQTGLEQAIKLAKGESAEKMTNIPYETITKR 317 >UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EI71_9FIRM Length = 357 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 40 FFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 97 F+ ++ GA+ A + GY N +S + A + V+D+ + G L+I+ D+ A+ Sbjct: 80 FYKMVRQGAEDAAAEHGYTINYQGTNSSTDTATQQNIVEDMMMSGIDALVISSIDAKAIN 139 Query: 98 NAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGI 157 + MA+ +IPVIT D + ++ ++ ++ YIA+K +G KV + Sbjct: 140 DT--MAS-LDIPVITFDDEMNPSVCLTTVSVNHEAAAAAGAAYIAEKLPDGGKVAVVSAE 196 Query: 158 AGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQND 216 AGT ++R GF+ + H F ++ + DR K N MQ+LL+ HPD+ AVF N+ Sbjct: 197 AGTDVIQQRDRGFENELKKHDGFELVGVYHTEGDREKAANTMQDLLSEHPDLVAVFCCNE 256 Query: 217 EMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKV 276 + G + L+ G++D++ VG+D + + + DG L A I+Q P +G V A + Sbjct: 257 GASAGVSKILKDEGRTDILAVGYDSSEELINNIYDGSLDALISQNPYGLGYNSVTAAIEA 316 Query: 277 LKG 279 + G Sbjct: 317 IDG 319 >UniRef50_C1RQG9 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RQG9_9CELL Length = 328 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 11/233 (4%) Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 G++L +D+Q ++ ++D + ++ +P ++ + IPV+ +DR Sbjct: 76 GFDLTFVDAQQKQENQIKALRDFIAQDVDVIAFSPVIETGWDEVLQEIKDSGIPVVLVDR 135 Query: 116 Q---ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 V+ I +D G AG+++ + A + AK+ ELQG G+ A +R EGF + Sbjct: 136 TVDTTVDDPYVTWIGADFKAEGTTAGEWVKENAPD-AKIFELQGTLGSGAQVDREEGFGE 194 Query: 173 AVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 V ++ +F R +G ++ L A+PD+ +F ND+M LGA+ A++ AGK Sbjct: 195 VVGDQ---IIGKASGNFTRAEGKTAVEAALQAYPDMTMIFTHNDDMGLGAIEAIEAAGKK 251 Query: 233 ---DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 D+ +V DG DG +A+ D K + P G + E +KV GE V Sbjct: 252 PGVDIQIVSVDGVRDGLQALVDKKFNYVVECNP-VFGDQLAELIEKVAAGEDV 303 >UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6Q1_9FIRM Length = 365 Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 133/267 (49%), Gaps = 21/267 (7%) Query: 43 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM 102 S+KD KE GY+L+ D+Q ++ +++ + +L+ P ++ Sbjct: 66 SMKDTFSKEN---GYDLIFDDAQQKQENQITAIRNFIQQEVDYILLAPVTETGWDTVLQE 122 Query: 103 ANQANIPVITLDRQATKGE---VVSHIASDNVLGGKIAGDYI---AKKAGEGAKVI---E 153 A A+IPVI +DR + + I +D + G+ A +++ A+ G A I + Sbjct: 123 AKDADIPVIIVDRMVDVSDDSLYTTWIGTDALCEGRKAAEWLNGFAEAKGIAASDIHIAD 182 Query: 154 LQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFA 213 +QG G++A R +G ++ V + ++++A Q +F + KG VM+++L + ++ V+ Sbjct: 183 IQGTIGSTAQIGRTKGLEEGVDKYGWDLVAQQTGEFTQAKGQEVMESMLKQYDNINVVYC 242 Query: 214 QNDEMALGALRALQTAGKS--------DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 +ND A GA+ A++ AGK+ ++MV+ FD T G + V DGK+ + P Sbjct: 243 ENDNEAFGAIDAIEAAGKTVGSDIANGEIMVISFDTTHAGLQDVLDGKIECDVECNPLH- 301 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKL 292 G + E K+ GE + VD ++ Sbjct: 302 GPRAEELIKKLEAGEDIDKLNYVDEEI 328 >UniRef50_Q7NV24 Probable ribose ABC transporter, substrate binding protein n=1 Tax=Chromobacterium violaceum RepID=Q7NV24_CHRVO Length = 330 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 15/263 (5%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 IA + + + PF+ ++ G + A+ GY LDS+ + +L NV+ R ++I Sbjct: 37 IAYITAKADLPFWDTVGKGVKAVAEANGYAFSELDSKLSAEMQLNNVRQAIDRRVAGIVI 96 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK----- 143 +PT+S + A+ +A +A IPV D A+ G+ VS + SDN G G +AK Sbjct: 97 SPTNSKSAEEALILARRAKIPVAIADIGASGGDYVSFVKSDNYRGAYDVGTELAKAMKAQ 156 Query: 144 ---KAGEGAKVIELQGIAGTSAARERGEGFQQAV--AAHKFNVLASQPADFDRIKGLNVM 198 G IEL G ++R GF+ A+ A ++ Q D+ + + Sbjct: 157 NWASGAYGMVTIELSRKNG----QDRTNGFRDAMKDAGFPREIVLRQMKDYSAEETYRYV 212 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAAT 257 + +L AHP ++ F + D+ GALRA++ AGK +++V FD PD + + G L A Sbjct: 213 KEMLAAHPGLRGFFIETDQPVAGALRAIREAGKEKQLLLVSFDAMPDVVRLLKSGALVAV 272 Query: 258 IAQLPDQIGAKGVETADKVLKGE 280 Q P +G+ L+G Sbjct: 273 GMQQPYLMGSSAAGALVSRLRGH 295 >UniRef50_Q0SII4 ABC ribose transporter, substrate-binding component n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SII4_RHOSR Length = 322 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 140/282 (49%), Gaps = 16/282 (5%) Query: 9 LVSAVALSATVSANAMAKD---TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 L++A ++A S D TI + ++ +NPFF++ + A + + V + Sbjct: 25 LIAAGTMTACTSGTGAGDDGTTTIGVTLNAASNPFFLAEGQAIETAAAEKRVEVSVQYAN 84 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH 125 + A + + + ++++ DSD +G A+ A QANIPV+ +D A + + Sbjct: 85 ADVAVQSDQIDTFIRQKVDSIIVDAVDSDGIGPALLRATQANIPVVAVDVTAIGAD--AT 142 Query: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLAS 184 + SDNV G+ A Y+ ++ G KV + G A SA +R +G ++A+ AH V+A+ Sbjct: 143 VTSDNVQAGREACTYLVEQLGGSGKVAIVDG-AAVSAISDRMQGCREALDAHPGIEVVAT 201 Query: 185 QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPD 244 Q AD R K +NV +LTA+PDV F ND A+G A Q G +V Sbjct: 202 QRADLTRDKAMNVASTILTANPDVDGFFGVNDPTAIGISLAAQQKGVDVKVVGVDGA--- 258 Query: 245 GEKAVND--GK--LAATIAQLPDQIGAKGVETADKVLKGEKV 282 K + D GK + AT Q P Q+G G++ A ++ GEKV Sbjct: 259 --KQLTDLLGKSSIIATSGQDPAQLGRSGLDIAVRLAGGEKV 298 >UniRef50_C0BVF8 Putative uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 RepID=C0BVF8_9BIFI Length = 330 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 134/277 (48%), Gaps = 18/277 (6%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPA-KELANVQDLTVRGTKIL 86 TI V F + ++ +K + G++LV +QNN K++ + Sbjct: 41 TIGFVAVGPEGGFRTANENDLKKAFEDAGFDLVYSPTQNNDQQKQIQAFNKFVNDEVDAI 100 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQ------ATKGEVVSHIASDNVLGGKIAGDY 140 +++ T+ + ++ A +A IPV T+DR A K VVSHI NV G+ A ++ Sbjct: 101 VLSATNDSGWDDCLENAAEAEIPVFTVDRNIDIKSDAAKKAVVSHIGPSNVWAGEQAAEF 160 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQN 200 + K +GA L+G AG S +RG G+ AA VL SQ A++ + V Sbjct: 161 VNKSFPDGANGFILEGPAGLSVVTDRGTGWDNK-AASNIKVLESQSANWSTDEAKTVTAG 219 Query: 201 LLTAHP--DVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAAT 257 LL + + Q +FAQNDEM LGA +A+ AG K V ++ DGT +++ DG L+ Sbjct: 220 LLDKYKSDNPQFIFAQNDEMGLGAAQAVDAAGLKGKVKIITIDGTKAALQSLVDGDLSYV 279 Query: 258 IAQLPDQIGAKGVETADKV---LKGEKVQAKYPVDLK 291 I P G ETA+ V L G+ V++ ++ K Sbjct: 280 IEYNP----IFGKETANAVKDYLDGKSVESDIEIESK 312 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 150/284 (52%), Gaps = 17/284 (5%) Query: 27 DTIALVVSTLNN--PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 D+ + V++ NN P+F L +G ++L L V D+Q++ ++ +Q G Sbjct: 53 DSFLIGVASPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFIAEGCD 112 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-------EVVSHIASDNVLGGKIA 137 ++++ P +++ N+A IP++T+DR+ + ++++H+ D+V GG+ Sbjct: 113 LIIMMPVQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQ 172 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA--AHKFNVLASQPADFDRIKGL 195 G+ + + G+ + +QG G S+ R +G ++ ++ A ++A+Q +D D+ + + Sbjct: 173 GELVHQLLGDEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAI 232 Query: 196 NVMQNLLT--AHPDVQAVFAQNDEMALGALRALQTAGKSDVM--VVGFDGTPDGEKAVND 251 V QN LT A ++ A+ AQ+ ALGA+ A+++A + +++ V+G+D + ++ Sbjct: 233 TVTQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKA 292 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLK--GEKVQAKYPVDLKLV 293 + + Q P +GA ++ A + L E+++A ++ +V Sbjct: 293 KDMYGSTLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVV 336 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--- 119 D Q K+L+ VQ ++++NP D+ N A +A +P+I L+R + Sbjct: 58 DGQGAVDKQLSQVQSFINGKVDVIIVNPVDTQGTKNMSDAARKAKVPLIYLNRMPSDSKM 117 Query: 120 GEVVSHIASDNVLGGKIAGDYIAK--KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 G+ +S+I SD + G++ Y+A K + + ++G+ A R R +G ++ +A H Sbjct: 118 GDGISYIGSDEIEAGRLQMGYLADMVKDRKNVNIAIMKGLLSNDATRFRTQGAKEVIAKH 177 Query: 178 -KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS---D 233 +V+ A + R G+N+M N + + + A DEMA+GA A+++ G + D Sbjct: 178 PNMHVVMEDTAKWMREDGMNLMNNWILTGQKIDILSANADEMAIGAAMAIKSNGLNIGKD 237 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 ++V G DG P+G +A+ G L T+ Q ++ A+K KGE ++ + +LV Sbjct: 238 ILVGGTDGGPNGLQAIKSGLLTVTVFQDAKSQAFGAIDMAEKAAKGETLKDINFIPFQLV 297 Query: 294 VKQ 296 Q Sbjct: 298 TPQ 300 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 145/300 (48%), Gaps = 11/300 (3%) Query: 6 LATLVSAVALSATVSANAM-------AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 L S + + +S+N + +K I T+NN +F + + + ++ G Sbjct: 16 LVFCTSIIGICIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGDT 75 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L+ D + K++ + D + INP D + NA+ A +A I +I +D Sbjct: 76 LITRDPALSLDKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAGIIIIAIDTDIY 135 Query: 119 KGEVVSH-IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 ++ + + SDN G + + + K A +I L+ + SA +R GF+ A+ + Sbjct: 136 DDDLTACTVVSDNYKAGVLCAEDLMNKRN-SANIILLEHKSAKSAI-DRINGFEDAIRNN 193 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV 236 K F V+A D + V++N+L DV + A ND ALG + AL+ + V Sbjct: 194 KNFKVVARSDCDGQLETAMPVVENILLKQKDVDTIMALNDPSALGGIMALEEKNIKGINV 253 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G DG+PDG+K V + K++AT++Q P +IG E+ + +G++V K V ++L+ K+ Sbjct: 254 YGIDGSPDGKKMVKEDKMSATVSQSPRKIGRISGESLYNIFQGKEVDKKIVVPVELITKE 313 >UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHP7_9FIRM Length = 365 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 10/219 (4%) Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 GY L ++D N+ AK+L V++ +G ++I P S ++ A A IPVI DR Sbjct: 96 GYELSLIDCDNDNAKQLEAVRNFITQGMDYIVIAPIQSAGWDTVLQEAQDAGIPVIIADR 155 Query: 116 --QATKGEVVSHIASDNVLGGKIAGDYIAKKA-GEGAKVIELQGIAGTSAARERGEGFQQ 172 +A + + + G AG+++A++ G AK+++++G G SAA R +GF + Sbjct: 156 EIEADASMYDAWVGTAPYDEGVTAGNWLAEQLDGAEAKILQIEGSVGASAAIGRTDGFAE 215 Query: 173 AVAAH-KFNVLASQPADFDRIKGLNVMQNLL-TAHPDVQAVFAQNDEMALGALRALQTAG 230 +A H ++ +L SQ DF + G VM++ + T V QND A GA+ A+ AG Sbjct: 216 VMAEHSEWELLDSQSGDFTQDGGQAVMESFIKTYEGQFNVVVCQNDNEAYGAMDAMDAAG 275 Query: 231 KS-----DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 + DV+++ +D T DG + DGK+ + P Q Sbjct: 276 ITYGVGGDVILISYDATHDGLQYTLDGKINLDVECNPIQ 314 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 127/236 (53%), Gaps = 5/236 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 I + + ++ F V++KD A K L+ +D++ + K+L +Q+ ++ ++ Sbjct: 75 IGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVDAKEDTVKQLGQIQNFIIQQVDGII 134 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAG 146 + P ++DA +A I ++ L+R+ T + V+++ S+ + G+ Y A + Sbjct: 135 LVPVNTDATQPMTDDILKAGIELVYLNRRPTYLPDGVAYVGSEELRFGEEQAKYAASHS- 193 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAH 205 +G + + G+ AA R +G + ++N++ Q A + R +G+ VM+N + + Sbjct: 194 DGGNIGIIMGMMTVEAAILRTQGVEDFFKEKPEYNIIRKQTALWQRSQGMVVMENWINSG 253 Query: 206 PDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 + + + ND+MALGA++AL+ AGK D +V+G D TPDG A+ +G L AT+ Q Sbjct: 254 DKLDIIISNNDDMALGAIQALRAAGKLDDTIVIGVDATPDGLMAIKNGALDATVFQ 309 >UniRef50_Q9K6K2 Ribose operon repressor n=82 Tax=Bacillaceae RepID=RBSR_BACHD Length = 331 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 25/300 (8%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 +K+L S+VA S + M I L++ ++NPFF L + A GY +V+ Sbjct: 40 IKELNYQPSSVARSLYHKTSGM----IGLLIPDISNPFFPELARAVEDVASTYGYTVVLC 95 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 ++ KE +Q L + +++ + K Q NIP++ LDR E Sbjct: 96 NTDEEIEKERKYLQALKQKYVDGVILTTS-----FLPYKEYEQLNIPMVALDRYV--NEN 148 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVI-ELQGIAGTSAARERGEGFQQAVAAHKF-N 180 + +AS N G ++A +++ + +G + I ++G G + A +R EGF++ V + N Sbjct: 149 IPLVASQNKAGARLATEHLLE---QGCQFIAHIRGPKGVTPAEDRYEGFKEVVEEQEVAN 205 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS---DVMVV 237 ++ S ADF + V + LL HP + +FA +D +A GA++A GK D+ +V Sbjct: 206 IVVS--ADFHIDEAQKVTRALLETHPTIDGIFASSDVVAAGAMKAAHMMGKRIPDDLQIV 263 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA-KYPVDLKLVVKQ 296 GFDG P G V T+ Q +GA K ++ + + +Y + KLVV++ Sbjct: 264 GFDGIPLGNMLVPS---LTTVEQPIYDLGAVSTRLLIKQIEKKPLDTYRYEIPTKLVVRE 320 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 132/263 (50%), Gaps = 17/263 (6%) Query: 32 VVSTLNNPFFVSLKDGAQKEADKL---GYNLVV-LDSQNNPAKELAN---VQDLTVRGTK 84 + + +N F+ + K+G ++ L G ++ + +D + + E+ +L +G Sbjct: 78 IAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTDNLVNQGYN 137 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS---HIASDNVLGGKIAGDYI 141 L+++P + +V A IP I ++ G + S + D G++A +++ Sbjct: 138 ALMLSPISDSNLTASVDNAKGKKIPTINVN----DGLIASADYFVGPDAYQNGELAAEWV 193 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPADFDRIKGLNVMQ 199 +K+ G+ V + G+A AARER GF+ + + NV+A Q AD+DR K + Sbjct: 194 SKQLGDKGDVAIVIGMAKAFAARERTAGFKGWIKDNNSGLNVVAEQNADWDRQKAKELAS 253 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIA 259 + +PD++A+F ND+MALG + A++ A K D++VVG DG + ++ GKL AT+ Sbjct: 254 TWIQQNPDLKAIFCNNDDMALGVVEAVEEA-KKDILVVGVDGIGEAYDSIRAGKLDATVD 312 Query: 260 QLPDQIGAKGVETADKVLKGEKV 282 + E +VL G+ + Sbjct: 313 SFGYYMSQVATEVTLRVLAGQDI 335 >UniRef50_Q21X74 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Bacteria RepID=Q21X74_RHOFD Length = 346 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 128/281 (45%), Gaps = 19/281 (6%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPAKELANVQDLTVRGTKIL 86 I L+ T NPFFV +K+GAQ EA K G L+ + + A ++ ++++ G K + Sbjct: 45 IGLITKTETNPFFVKMKEGAQAEAKKAGAKLMTATGKKDGDTASQITALENMAAAGAKTI 104 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 LI T DA+ VK + VI LD + + A+DN G + G Y G Sbjct: 105 LITST-GDAIIPTVKKVQAKGVQVIALDSPFDGADAL--FATDNYKAGVLIGQYAKAALG 161 Query: 147 EG-AKVIELQGIAGTSAARERGEGFQQAVAAH----KFNVLASQP-------ADFDRIKG 194 + AK+ L G +R GF K N L+S D ++ KG Sbjct: 162 DKPAKIAMLDLFPGHPVGAQRHNGFMSGFGLKANDAKSNELSSTAETVCAGDTDGNQAKG 221 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGK 253 M+N L +PD+ V+ N+ A GA AL+ AGK V++V DG G K GK Sbjct: 222 QTAMENCLQKNPDINVVYTINEPAAAGAYNALKKAGKEKGVIIVSVDGGCQGVKDTAAGK 281 Query: 254 LAATIAQLPDQIGAKGVETADKVLK-GEKVQAKYPVDLKLV 293 +AAT Q P ++ + GV + K G+KV + L+ Sbjct: 282 IAATSQQYPLKMASMGVAAGVEYAKTGKKVSGYVDTGVTLI 322 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 19/305 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK++ +A+ L+A+ +A A D + S N+ F + + EA K L V Sbjct: 1 MKRMIIGTTAMFLAAS---SAYAGDIGVTIAS--NDTFLAVMVQAMKDEAAKTNQPLQVE 55 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--- 119 + + K+L+ +Q+ +++N +S A KMA A IP++ ++ + Sbjct: 56 FADADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQ 115 Query: 120 -GEVVSHIASDNVLGGKIAGDYIA---KKAG--EGAKVIELQGIAGTSAARERGEGFQQA 173 G + I S + G + + K+ G E A ++ +QG+ AA +R + Sbjct: 116 LGPKAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDV 175 Query: 174 VAAHKFN---VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 VA + N ++ Q A +D +K ++M N +TA AV + ND+MALGA+ +L+ AG Sbjct: 176 VATPECNFMKIIDEQTAQWDPVKAQDLMTNWITAGHKPVAVLSNNDDMALGAVNSLKAAG 235 Query: 231 KS--DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 DV+V G D T + V G L AT+ Q GA V+ A K+ KGEKV++ + Sbjct: 236 WEMKDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESPVWI 295 Query: 289 DLKLV 293 +LV Sbjct: 296 PFELV 300 >UniRef50_Q2RXU3 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Proteobacteria RepID=Q2RXU3_RHORT Length = 334 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++NP D +A + A A IPV+ + + E+ + + SD+VLGG + + K Sbjct: 89 IVVNPMDYEANIDIATNAKMAGIPVVVTNARLNTDEMTAEVVSDDVLGGYLEAKDVLTKL 148 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVA---AHKFNVLASQPADFDRIKGLNVMQNLL 202 G V+ ++G G S +RG+G ++A+A A VL + A++ R + L++MQN L Sbjct: 149 GCKGNVVIIEGPKGGSGEIQRGQGNEKALAECPAGAVKVLERKTANWSRAEALDLMQNWL 208 Query: 203 TAHP-DVQAVFAQNDEMALGALRALQTA--GKSDVMVVGFDGTPDGEKAVNDGKLAATIA 259 + HP + V QNDEMALGA+ A++ A D + G DG D AV G++ + + Sbjct: 209 SKHPGKINGVIGQNDEMALGAIEAIKAADLNVKDFAIAGIDGVTDALHAVKAGEMTSILQ 268 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPV 288 QI ++ A + +KG + P+ Sbjct: 269 DARGQIQGS-IDVALRAVKGPDYKPMSPI 296 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 131/271 (48%), Gaps = 3/271 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 + + VS N F V + + ++ + GY + ++D+ + K+++ ++ + +L+ Sbjct: 48 VFMTVSNQQNEFMVGMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILV 107 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKAGE 147 P D + +K A+ A IPV + + ++V S I D GG++ + + K GE Sbjct: 108 EPCSVDGLTTGLKEAHDAGIPVFVIHNNVSATDLVTSLIHVDVRQGGELKMEQVIKDCGE 167 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHP 206 AK+ + G G + G+ + + V+ ++ + +N L + Sbjct: 168 DAKIAIMTGTLGQDTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLASGK 227 Query: 207 DVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 ++ A+ ND MALG + L++AGKS+ + V G D T +G KAV+ G++AATI Sbjct: 228 EIDAIVCNNDGMALGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGEMAATIYVDSKAE 287 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 K E + + G+KV A+Y V LV K+ Sbjct: 288 IEKAFEMLEDLKAGKKVDAEYKVPSVLVTKE 318 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 114/217 (52%), Gaps = 7/217 (3%) Query: 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDN 130 +L+ ++D +G +L++P ++ A++A+IPV ++ + ++ + ++ Sbjct: 143 QLSILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM--FVGPNS 200 Query: 131 VLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPAD 188 + G++A +++ +K G V + G+A T+ R R +GF++ A + V+A Q AD Sbjct: 201 LEQGQLAAEWVNEKLGGSGDVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQVVAKQNAD 260 Query: 189 FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG---KSDVMVVGFDGTPDG 245 +DR + +V L +PD++A+F ND MALG + A++ A D+ V+G DG + Sbjct: 261 WDRSQAKDVAATFLKTYPDLKAIFCNNDVMALGVIEAVKEADLTLNKDIYVIGCDGQSEA 320 Query: 246 EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 ++ ++AATI P G E + L G+ V Sbjct: 321 YDSIRANEMAATIDTFPYYEGYMAAEVCYRSLIGQTV 357 >UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QS72_MYCS2 Length = 348 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 127/255 (49%), Gaps = 4/255 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN-NPAKELANVQDLTVRGTKILL 87 IA + + + F+++++ GAQ+EA LG + Q +P + + + LL Sbjct: 62 IAFLQGVVGDQFYITMQCGAQEEAANLGVTVNTQGPQKFDPTLQKPILDSIVASKPDALL 121 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIAGDYIAKKAG 146 + PTD A+ ++ A A I V+ +D VS IASDN GG+ A + I + Sbjct: 122 VAPTDVQAMQMPLEQAAAAGIKVVLVDTTTNDPSYAVSAIASDNEGGGRAAFEAIKQLHP 181 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAH 205 EG KV+ + G S R +GF++AVA F + Q + D ++ L Sbjct: 182 EGGKVMVMGLDPGISTTDARTKGFEEAVAEDPGFTYVGVQYSHNDPATAAQLIGAQLQRD 241 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 PD+ VFA N A G+ ++ AGKS+ V VVGFD P+ +A+ +G + A +AQ P Sbjct: 242 PDLVGVFAANLFTAEGSATGIKQAGKSEQVAVVGFDAGPNQIQALREGTVQALVAQDPGT 301 Query: 265 IGAKGVETADKVLKG 279 IG GV+ A L+G Sbjct: 302 IGKFGVDEAVTALEG 316 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 9/260 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTVRGTKIL 86 I V L N ++ SL +G + D G L S+ + +L+ +++ ++G + L Sbjct: 58 IGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGL 117 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQA--TKGEVVSHIASDNVLGGKIAGDYIAKK 144 L++P + + A++ A I V+ ++ + + V ++ DN G ++A +I + Sbjct: 118 LVSPQTDNNLQPAMETAASRGIAVVNVNDAVIPSATQYVGNVQRDN--GVRVAQWFIDNR 175 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLT 203 G G KV ++G G AA +R +GF + A F V+AS PA++ R + + +L Sbjct: 176 PG-GGKVAAIEGQPGVFAAGQRTDGFTTTITEAGNFQVVASVPANWSREQAYDAASTILQ 234 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 HPD+ +A ND MALG + A++ A + V V G DG PD ++ G L T+ P Sbjct: 235 QHPDLIGFYANNDGMALGVVEAVKAANLQEQVSVFGTDGIPDAYASIRAGDLTGTVDSFP 294 Query: 263 DQIGAKGVETADKVLKGEKV 282 G +E ++L G+ + Sbjct: 295 VLTGEVAMEVVLRLLAGQGI 314 >UniRef50_C0C5R0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5R0_9CLOT Length = 382 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 15/279 (5%) Query: 30 ALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLIN 89 A+ V+ L++ + ++++ Q ++ G ++ V + + + + D +G +++LI Sbjct: 74 AITVAELDSEYIIAVQKYMQYILEEAGADVTVSSADGDAENQCNQIYDFIEKGVEVVLIQ 133 Query: 90 PTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH-IASDNVLGGKIAGDYIAKKAGE- 147 DS+AV A+K N A + VI ++R V + + D+ G++ YIA + E Sbjct: 134 AADSNAVAPAIKACNDAGVKVIAVNRTIYGDCKVDYSVLIDDKAMGEMCAKYIADNSKEK 193 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 KV +QG GT+ A +R EGF V + + + P ++ K + M ++LT D Sbjct: 194 DVKVTTMQGTLGTATADDRAEGFSAGVQSDGLDNIRDNPCEWSSEKAMAAMNDVLTTDSD 253 Query: 208 VQAVFAQNDEMALGALRALQTAGK-------SDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 V AVF +D M G + AL + K VM+V DG + L T+ Sbjct: 254 VGAVFLHSDCMLAGVVSALTQSDKLKNVGEDGHVMIVSIDGAASALDYIRQDVLDMTVDN 313 Query: 261 LP---DQIGAKGVETADKVLKGEKVQAK-YPVDLKLVVK 295 P I AK V T KV+KGE + K VD ++ K Sbjct: 314 SPLAMATIAAKAVLT--KVVKGEDLGGKVITVDATVITK 350 >UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWB0_HERA2 Length = 332 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 9/234 (3%) Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ-- 116 LV D+Q +++ V+ +G ++ + P D + A A IPVI +DR Sbjct: 79 LVFSDAQQKQENQISAVRACIQQGVDVIALPPVVEDGWDAVLTEAKNAGIPVIIVDRSVS 138 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 A K +HI S+ VL G+ A K G ++EL G G+ AA R +G + + + Sbjct: 139 ADKSLYSTHIGSNMVLEGERAAAEFNKMMPNGGAILELSGTTGSGAAVGRAKGLRNKLNS 198 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLL---TAHPDVQAVFAQNDEMALGALRALQTAG--K 231 + ++ SQ +F R + + VMQ LL T D Q +F ND+M +G + L+ AG Sbjct: 199 N-ITIIDSQTGNFTRAEAVPVMQALLKKYTPGTDFQGIFIHNDDMGIGVIEVLKAAGIKP 257 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 D+ +V DGT G +A+ DG A + P +G + E A K++ G+ V+ + Sbjct: 258 GDLKIVSVDGTRGGFQAMVDGWFQADVECNP-LLGPQVFELALKLMNGQPVEPE 310 >UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NFD0_EUBSP Length = 367 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 135/270 (50%), Gaps = 13/270 (4%) Query: 26 KDT---IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTV 80 KDT +A + STL N F+V++++G + A++ G ++ V DS + +L + ++ V Sbjct: 74 KDTGKKLAAIESTLTNSFWVTMQEGYEDTAEEYGVSIDVQATDSDTDTTGQLDILNNMLV 133 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-------GEVVSHIASDNVLG 133 + + + ++P D + + + ANQ ++ +IT + + G++ + I D Sbjct: 134 KDYEAIAVSPLTEDCLISGIVAANQNDVKIITTGNEVNEDSLKEAGGKIDAKITVDFYNQ 193 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIK 193 G + YI K KV + G G + + R +G ++ V+A + DFD K Sbjct: 194 GVLGAQYIIDKTDGKGKVAVIAGNEGATQSDARRDGAKETFEDAGMEVVAVEQCDFDAQK 253 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDG 252 + ++ ++PD+ + ND+MALG +RAL+ K V VVG D T + + A+ +G Sbjct: 254 AYDAAAAIIESNPDIVGIACGNDDMALGVVRALEEKDVKDQVAVVGVDFTEEAKAAIEEG 313 Query: 253 KLAATIAQLPDQIGAKGVETADKVLKGEKV 282 AT+A P +G + V K L+G+ V Sbjct: 314 TYDATVAMSPYLMGKEAVIIMLKALEGQDV 343 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 128/241 (53%), Gaps = 9/241 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGT 83 ++ I ++V TL+NP++V++K+ + A ++G ++ V+ ++ + +L ++ + + Sbjct: 49 QERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKKY 108 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATK------GEVV-SHIASDNVLGGKI 136 +++ P D + + A++ IPV+ + ++ G V+ I + G++ Sbjct: 109 DGIIVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGLKQAGAVMDGWITATFKDQGRL 168 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 196 + +A+K G++V ++GI G ++ R EG + ++A + ++DR + + Sbjct: 169 CAEDMAEKLPSGSEVAIIEGIPGAGQSKARREGASEGFEKAGLKLVAVEAGNWDRNRAYD 228 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAA 256 + NL+ AHP ++ ++ ND MAL A+ AL+ AG V V G D P+ +A+ G+LA Sbjct: 229 ITTNLVKAHPQLKGIYCANDVMALAAVDALEVAGIEGVTVYGTDFIPEAAEAIKSGRLAG 288 Query: 257 T 257 + Sbjct: 289 S 289 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 8/285 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL--V 60 M K + SA+ + A +A A ++ + V +L N +FV+L A+ +A ++ ++ + Sbjct: 23 MIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVI 82 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 +DS + K+ + + G ++L+ D A+ A+K A A I V+ D A Sbjct: 83 TVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGA 142 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KF 179 + + ++NV G+IA YI K G I +Q S+ +R G ++++A + K Sbjct: 143 DAT--VQTNNVQAGEIACQYIVDKLGAAGGQIIIQNGPQISSIIDRVSGCRKSLANNPKI 200 Query: 180 NVLAS-QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 +L+ Q R +G+ +MQ LT H + AVF D A G+ A Q G+++ + Sbjct: 201 TILSDDQNGKCSRDEGMKIMQGHLTRHRKIDAVFTVCDPQATGSDLAAQQFGRNEFFIAS 260 Query: 239 FDGTPDGEKAVNDG--KLAATIAQLPDQIGAKGVETADKVLKGEK 281 DG PD EKA G ++ A+ +Q P + + V+ +++ G+K Sbjct: 261 VDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKK 305 >UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LA89_MAGSM Length = 374 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 126/243 (51%), Gaps = 5/243 (2%) Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 + +++ D++ N ++ +++ + RG +L+ +P D + + + +PV+ L R+ Sbjct: 125 FQVILSDAKGNTTQQAIDLEHMVERGVHVLVTSPRDGAVLTPVISNIYRQGVPVVLLSRR 184 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 + IA D+ G+ A Y++K+ E K++ +QG+ S ++R GF Q ++ Sbjct: 185 TLDENFTTFIAPDDAEIGRQAARYLSKRLNEKGKILVIQGLGSASTTQQRTVGFIQELSL 244 Query: 177 HKFNVLASQP-ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSD 233 H + +QP A++ + + +M+++L A++ +D MALGA+ AL+ AG + Sbjct: 245 HPHMQIVAQPFANYKKEMAILIMESILAQKLPFDAIYVHSDAMALGAILALKRAGIDPTK 304 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 + +V D T G +++ G++ A I P+ + +G+ ++L G+ V V LV Sbjct: 305 LPIVSIDYTRAGRESLRKGEIDA-IFTYPNGV-KQGITAVKRILAGQPVNKFQTVPSTLV 362 Query: 294 VKQ 296 ++ Sbjct: 363 TQE 365 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 12/281 (4%) Query: 15 LSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-----GYNLVVLDSQNNPA 69 L A V + AK I + V + ++ + L A K A L V+ S + + Sbjct: 17 LFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDIEFFVVASSSG-S 75 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASD 129 K++ +V+DL ++G L+I P + + ++ A I + +DR+ IA D Sbjct: 76 KQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDRELAHPAQNVFIAGD 135 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPAD 188 N G++ ++AK+ V+ ++G+ ++R + F +A + +L SQP D Sbjct: 136 NAGLGRVGAQWLAKEMSGKGNVVVIEGLQ-IPINKQRVDAFNDVIAGYPNIKILDSQPGD 194 Query: 189 FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV-MVVGFDGTPDGEK 247 + K L+VM+N L HP + AV+ Q+D+M G L+A++ +G++D+ V+G G+ D + Sbjct: 195 WSTQKALSVMENFLQKHPKIDAVWCQDDDMLKGVLKAIEESGRTDIKTVLGGAGSKDIIE 254 Query: 248 AVNDGK--LAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 + G + AT+ P I A G+ A +K EK+ Y Sbjct: 255 MIQSGNKMVRATVTYSPSMI-ASGIALAVHGVKHEKLGYLY 294 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 15/225 (6%) Query: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINP---TDSDAVGNAVKMANQ 105 Q A++LG L + D+Q ++ ++ +G ++ ++P T D V VK Q Sbjct: 69 QDTANQLGVELALSDAQQQQENQIKAIRSFIAQGVDVIGVSPVVETGWDEVFAEVK---Q 125 Query: 106 ANIPVITLDRQA-TKGEVVS-HIASDNVLGGKIAGDYIAKKA-GEGAKVIELQGIAGTSA 162 A IP+I LDR A ++ S I SD V G+ A +A+ G+GA V+ L+G G++ Sbjct: 126 AGIPLILLDRNANVPDDLYSVRIGSDFVEEGRRACGEMARLLDGQGAIVV-LEGTQGSAP 184 Query: 163 ARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMAL 220 RG GFQ+ + ++ +++ SQ DF R +G M LL H + + VFAQND+MAL Sbjct: 185 MIGRGTGFQECLQSYPALHIIDSQSGDFIRARGKEEMAALLQKHGNSIDGVFAQNDDMAL 244 Query: 221 GALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 GA+ A++ G D+ +V D +A+ DGKL ATI P Sbjct: 245 GAIEAIEEYGLRPGVDIKIVSIDAVRAAFEAMIDGKLNATIECNP 289 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 12/230 (5%) Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 LV+ D+Q + +K++A V+ + +L++ P + A+ + A +A IPVI L+R Sbjct: 62 LVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDIL 121 Query: 119 KGEVVSHIASDNVLGGKIAGDYI----AKKAGEGA-KVIELQGIAGTSAARERGEGFQQA 173 + S+I SDNV G++AG +I KK G+ A V+ ++G+ G R G ++ Sbjct: 122 QPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRGAKEI 181 Query: 174 VAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 + + + ++A AD+ + K + M +L A P + V+ ND MA+GA + G+ Sbjct: 182 LDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYLGAKELGRE 241 Query: 233 DVMVV----GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 278 M+ G G G K V DG LAAT P + K VE ++L+ Sbjct: 242 KEMIFVGVDGLGGPAGGIKKVMDGVLAATFV-YPLWVD-KAVEIGTRILR 289 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 135/283 (47%), Gaps = 21/283 (7%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKE------LANVQDLTVRG 82 IA+V + F+ S+ GA K + +L ++V P +E + V +G Sbjct: 43 IAVVPKGTTHEFWKSVHAGAVKASRELDVDVV----WKGPLREDDLKAQVDVVSSFVAQG 98 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIA 142 +++ P D+ A+ V+ A QA IPV+ D + VS +A+DN G++AG+++ Sbjct: 99 VSGIVLAPLDATALRAPVRAARQAKIPVVVFDSDLASDDHVSFVATDNEAAGRLAGEHLG 158 Query: 143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ--------PADFDRIKG 194 K GE KV+ L+ G+++ + R +GF AV A +AS+ + F + + Sbjct: 159 KAIGEDGKVVVLRYQEGSASTQHREKGFLDAVRAMPGVTVASENQYGGATTESAFHKSES 218 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ-TAGKSDVMVVGFDGTPDGEKAVNDGK 253 L + Q A + VF N+ G L+AL+ T V VGFD + A+ +G Sbjct: 219 LLLAQR--AAEGAIAGVFTPNESTTFGMLQALRKTNVARKVKFVGFDASEKLLGALREGD 276 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + A + Q P +G V+T L GEKV A+ ++V +Q Sbjct: 277 IEALVVQNPFNMGYVAVKTMVAHLHGEKVAARIDTGSRVVTRQ 319 >UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=B5IYU4_9RHOB Length = 347 Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 8/238 (3%) Query: 55 LGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD 114 LG V+D Q +PA + +QD+ + +++ PT +A+ A++ A+++ IP+IT + Sbjct: 88 LGIMATVMDPQGDPAIQFDQIQDMASQNMDAIVVWPTSQNALIPAIRDASRSGIPIITSN 147 Query: 115 R---QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 +A + ++ H D+ + A + + G ++ ++G G S + RG F Sbjct: 148 SPIGEAGRRYILGHTGPDDCALAEQAAEMLGSAIGGEGNIVVVEGTPGYSVSILRGNCFL 207 Query: 172 QAVA--AHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQT 228 +A NVL SQ A+++R K VM+ LT D + V+A +D MALG + ALQ Sbjct: 208 DKLADDFPDVNVLDSQTAEWNREKAQTVMETFLTRFGDQIDGVYAFDDGMALGVVSALQA 267 Query: 229 AGKS--DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA 284 AG+S DV +V + +G A+ +G ++ + Q P ++TA +V G +V A Sbjct: 268 AGRSAGDVKIVSCNQFGEGWDAMKEGWISGSGKQSPIDDAILAIQTAVRVANGIEVPA 325 >UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Y2_9CLOT Length = 341 Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 18/257 (7%) Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 GY L+ +++ ++ ++ + ++ +P D ++ A A IPVI +DR Sbjct: 76 GYFLIFDNARQKQENQIKALRSFISQQVDYIVFSPIVEDGWDTVLQEAKDAGIPVILMDR 135 Query: 116 QA-TKGE--VVSHIASDNVLGGKIAGDYIAK------KAGEGAKVIELQGIAGTSAARER 166 + K E + + SD G+ AG ++A +AGE ++ LQG G+++ R Sbjct: 136 KVKVKDESLYTAWVGSDFAEEGQNAGRWLAGHLKEEGRAGEEINIVVLQGTNGSTSVIGR 195 Query: 167 GEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRA 225 EGF A H +N+L ADF KG M+ +L + D+ V +QND+M GAL A Sbjct: 196 TEGFDSVAAQHDNWNILEQADADFTTAKGREEMKKMLHKYEDIDVVVSQNDDMTFGALEA 255 Query: 226 LQTAGKSD-----VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-G 279 + AG+S ++++ FD T + V G + I P+Q GA +E +VL+ G Sbjct: 256 IGEAGQSTGTDGGIILISFDATKSALEKVEQGIINVDIECNPEQ-GAY-IEEVIRVLESG 313 Query: 280 EKVQAKYPVDLKLVVKQ 296 + + +Y V ++ K+ Sbjct: 314 GQAEKEYFVSERVFTKK 330 >UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PVL5_9BACT Length = 858 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 107/199 (53%), Gaps = 4/199 (2%) Query: 64 SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV 123 +++N ++A ++ +G +++++P ++ A+ + A + V+ +DR++ + Sbjct: 22 AKDNNRVQIAQIERFIDKGADLIIVSPNEAKALTPVINKAFDRGVRVVLVDRKSASDKYT 81 Query: 124 SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVL 182 + I +DNV G+ G ++ + G +V+ELQG+ G+S A ER GF++A+A + + V+ Sbjct: 82 AFIGADNVAIGRAVGRFVGEHLGGKGRVMELQGLRGSSPAIERDSGFREALAHYPQIKVV 141 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 A+ AD+ +K + + VFAQ D M +GA +A Q G V +VG D Sbjct: 142 ANAHADWFALKAETEATRMFKTVGEADLVFAQCDRMGIGAHQATQKLGIKGVKIVGVDAL 201 Query: 243 P---DGEKAVNDGKLAATI 258 P DG +AV +G AT Sbjct: 202 PTPGDGIEAVKNGTFLATF 220 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 G ++ + + ++ K+ +V +G +L+I+ ++ + V+ A Q IPVI +DR Sbjct: 59 GVSVEIRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDR 118 Query: 116 QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 + + ++I +DN G+ G+YIA V+EL G+ G++ A ER +GF A++ Sbjct: 119 KILSDKYTAYIGADNYEIGRAVGNYIASSLKGKGNVVELTGLGGSTPAMERHQGFMAAIS 178 Query: 176 AH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV 234 + ++ A ++R M ++L HP + AV+A ND +A GA +A + AG+ Sbjct: 179 NYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKKAGREKE 238 Query: 235 MV-VGFDGTP---DGEKAVNDGKLAAT 257 M+ VG D P +G + V D L AT Sbjct: 239 MIFVGIDALPGKGNGLELVLDNVLDAT 265 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 137/289 (47%), Gaps = 11/289 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG---Y 57 MN++ + +A A S A ++ + V L NPFFV++ GA+ A K+G Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + + S+ + ++ +++ ++L+N +D + +K A A I + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI--AVVAVDV 118 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + SDN + G + ++A++ G V+ + G +A R G ++ + + Sbjct: 119 GAVGADATVMSDNAMAGAESCKFMAQQLGGRGNVVIVNG-PPVTAVSARVAGCKKVLGNY 177 Query: 178 KFNVLAS--QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV- 234 L S Q A R G+ M NLLTAH + AVFA ND +GA A++ AG+SDV Sbjct: 178 PGIKLLSDNQDAHGSRDGGMETMANLLTAHKKIDAVFAINDPTGIGAELAVKQAGRSDVK 237 Query: 235 MVVGFDGTPDGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGEK 281 ++ DG PD EKA+ D K A + AQ P + V+ +L G++ Sbjct: 238 LIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKR 286 >UniRef50_B5J7Y9 Putative uncharacterized protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7Y9_9RHOB Length = 360 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 144/295 (48%), Gaps = 15/295 (5%) Query: 1 MNMKK-LATLVSAVALSATVSANAMA--KDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 MN+KK LAT + ++ L A + A+A + T+ +++ L+NP+ + GA+ ++LG Sbjct: 13 MNIKKTLATFIMSLGLGAVSLSPALADGETTLVVMIRGLDNPYHANYVTGAEALGERLGL 72 Query: 58 NLVVLDSQNNPAKELANVQDLTVR--GTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 + VL S+ N K+ A+++ R G ++ ++P + V K+ A I + Sbjct: 73 PVAVLSSEGNSQKQFADLRAQIARTGGNMVVNVDPNEGPDVVPIAKILEDAGIYWVNWWN 132 Query: 116 QATK------GEVVSHIASDNVLGGKIAGDYIAK--KAGEGAKVIELQGIAGTSAARERG 167 + + V+HIA D V G + + + + +I +QG+ +AA R Sbjct: 133 KPDQVSLEDYPHWVAHIAFDAVDQGYYSASELFETFETPNKGTIIAIQGMLSNNAAIGRF 192 Query: 168 EGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 226 G +A+ + +L + AD+D + + LL AHPDV V+A ND MA+GA+ AL Sbjct: 193 NGLLKALEENPGVELLQWEAADWDTNRAYESTKQLLAAHPDVDGVWAANDNMAVGAVAAL 252 Query: 227 QTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE 280 + VMV G DGT D A+++G ++T Q G+ A + GE Sbjct: 253 KELDLDGQVMVSGVDGTLDALDAISEGTQSSTEFQDSRYQSQLGLTMALAAMNGE 307 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 133/267 (49%), Gaps = 10/267 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL-VVLDSQNNPAKELANVQDLTVRGTK 84 K TIA+V L +PFF + G +++A +LG V Q +PA ++ ++DL + Sbjct: 75 KITIAMV-PKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDLIRKKVH 133 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 + I+P + +V + + I ++T D + + V +I +DN GK G+ +AK Sbjct: 134 AISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQRVMYIGTDNKAAGKTMGETMAKL 193 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTA 204 KV + G G +R EGF++ V + V+ Q D D KGL+V + +L A Sbjct: 194 LNGRGKVGIITGGLGALNLNQRIEGFKEGVGPN-IQVVDVQATDDDLQKGLSVSEAMLRA 252 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD----VMVVGFDGTPDGEKAVNDGKLAATIAQ 260 HPD+ + + + L++ D +++V FD + ++A+ +G +AAT+ Q Sbjct: 253 HPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQEGIIAATMVQ 312 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYP 287 P Q+G V+ A +L G +AK P Sbjct: 313 RPVQMGVLTVQWAYDILTG---KAKPP 336 >UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQE2_AGRRK Length = 334 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 10/239 (4%) Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L V D + A + + + + + + P DS A + A N+PV+ + A Sbjct: 66 LTVFDGNYDHATQASQFDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVGSNGPAK 125 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 E+VS I SD+V G+ + + K G+ ++ L G G R EG ++A+ A+K Sbjct: 126 SDELVSFIGSDDVAAGQYEAETLFKAIGDKGNIVVLIGPEGNLGQELRTEGNKKALDANK 185 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAG--KSDV 234 VL + A++ R + + +MQN LT+H + V AQNDEM LGA+ A++ AG + Sbjct: 186 DITVLERKTANWSRSEAMVLMQNWLTSHKGKINGVLAQNDEMGLGAIAAMKAAGIDPKTI 245 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA------KYP 287 VVG DG D +AV G + +I Q V+ A + + G+ Q KYP Sbjct: 246 PVVGIDGVTDAVRAVQSGDMILSIRQDAQTQAQGAVDIALRRVIGDSYQPLAECWKKYP 304 >UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XH32_NAKMY Length = 350 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 124/269 (46%), Gaps = 4/269 (1%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN-NPAKELANVQDLTVRGTKILL 87 +A + + F+++++ G + EA KLG + Q +P + + + +L Sbjct: 66 VAFIQGVAGDEFYITMQCGIEAEAAKLGVTVNTQGGQKFDPTLQTPILDSVVASKPDAIL 125 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGGKIAGDYIAKKAG 146 I PTD A+ ++ A A I V+ +D VS ++SDN GG A I K Sbjct: 126 IAPTDVTAMQRPLENAAAAGIKVVLVDTTTEDPSFAVSQVSSDNEGGGAAAFKAIKDKNP 185 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVMQNLLTAH 205 G KV+ + G S R +GF+ AV F+ L Q + D ++ L Sbjct: 186 NGGKVLVISTDPGISTVDARVKGFEDAVGKDSTFDYLGVQYSHNDPATAAQLVTAALQKD 245 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSDVM-VVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 PD+ +FA N A G+ ++ AGKSD M +VGFD P+ KA+ DG + A +AQ P Sbjct: 246 PDIVGIFATNIFSAEGSSTGVKQAGKSDQMTIVGFDAGPNQVKALKDGTVQALVAQQPAT 305 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLV 293 IG G++ A L G + K ++ Sbjct: 306 IGTDGLDQAIASLDGGTITPKIQTGFTII 334 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 125/250 (50%), Gaps = 16/250 (6%) Query: 15 LSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELAN 74 L A + + K TI + T N+PF+ + + + +LG + + ++ + K+L++ Sbjct: 25 LPACGFSESHHKLTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAVSAEEDEQKQLSD 84 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR-------QATKGEVVSHIA 127 V+ L +G L++ P + +++A QANIPV+ +DR Q + V+ + Sbjct: 85 VETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQNKNADYVAFLG 144 Query: 128 SDNVLGGKIAGDYIAKK--AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ 185 +N + AG IA+ AG G+K + L G+ G S A+ R G + A+ A ++ Q Sbjct: 145 PNN----EKAGSGIAEALMAGGGSKFLALGGMPGNSVAQGRKAGLESALTAVGHRLVQFQ 200 Query: 186 PADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGKSDVMVV-GFDGT 242 A KGL +N+L AHP D A++ ND++ GA++A+ A + + G D T Sbjct: 201 YAGDSEDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIKAVYNANREKEFIFGGMDLT 260 Query: 243 PDGEKAVNDG 252 P A+ +G Sbjct: 261 PQAIAAIENG 270 >UniRef50_C7QZ43 Periplasmic binding protein/LacI transcriptional regulator n=8 Tax=Actinobacteridae RepID=C7QZ43_JONDD Length = 328 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 9/211 (4%) Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV---VSHIASDNVLGGKIA 137 G ++L++ T+ +++ A +A IPVI +DR V+ IA DN+ Sbjct: 94 EGVDVILLSATEGSGWEDSLSRAQEAEIPVILIDRGIEPDNTDLYVTRIAPDNIAVSTSV 153 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 ++ EG L+G AG S ER EG+ + A F L +Q A++ + + Sbjct: 154 AEWAKTALPEGGNYFVLEGPAGVSVVNERNEGWDAVIGAESSFTKLGAQTANWSTEEAKS 213 Query: 197 VMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDG 252 V + +L ++ DVQ VFAQNDEM LGA +A++ AG + DV + DGT +A+ G Sbjct: 214 VFETVLKSNNNDVQLVFAQNDEMGLGAAQAIEEAGLTPGEDVKIATIDGTKGALEALAAG 273 Query: 253 KLAATIAQLPDQIGAKGVETADKVLKGEKVQ 283 +L + +A+ G V+ +KVL GE V+ Sbjct: 274 RL-SFVAEYNPLFGDVAVDVVNKVLDGESVE 303 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 11/218 (5%) Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 G L D+Q ++ ++ + ++ +P ++ A A IPV+ DR Sbjct: 61 GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 116 QATKGEV---VSHIASDNVLGGKIAGDYIAKKAGEG---AKVIELQGIAGTSAARERGEG 169 + V+ + SD V G+ AG ++ +K + ++ELQG G++ A +R +G Sbjct: 121 AVNTKDTSLYVTFMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQGTVGSAPAIDRKKG 180 Query: 170 FQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAH-PDVQAVFAQNDEMALGALRALQ 227 F++ V A KF ++ SQ DF R KG VM+ L A + ++A ND+MA+GA++A++ Sbjct: 181 FEEVVKADPKFKIIRSQTGDFTRAKGKEVMEAFLKAEGRKINVLYAHNDDMAIGAIQAIE 240 Query: 228 TAG---KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 AG D+ ++ D +A+ GKL T+ P Sbjct: 241 EAGLKPGKDITIISIDAVKGAFEAMMAGKLNVTVECSP 278 >UniRef50_Q7P137 Probable ribose ABC transporter, substrate binding protein n=1 Tax=Chromobacterium violaceum RepID=Q7P137_CHRVO Length = 313 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 8/272 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI--L 86 I + V L+NPF+ +L GA + A +L + + N Q + K+ + Sbjct: 26 IGISVGALDNPFYQALARGAVQAAHRLNPGVRITSQSANFTLGQQQQQLRQLIAQKVDLI 85 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 L+ DS+AV V+ A A I V+ +D A +V + SDN L G+I Y+A++ Sbjct: 86 LLGAVDSNAVAPLVRQARAAGITVVAVDVDAP--DVDGTVKSDNHLAGEIVCRYLAQRL- 142 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTA 204 G + +QG ++ +R G A+AA H V A + G MQ L Sbjct: 143 RGRGTLMIQGGPPVTSVSDRIAGCHAALAAFPHIRAVDDGLNAQGSSLGGQRAMQQALQR 202 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN-DGKLAATIAQLPD 263 PD+ AVF ND ALG +AL AG+ V++ DG+PD E+A+ G++ + +Q P Sbjct: 203 WPDMAAVFTINDRQALGVEKALLAAGRKQVLIGSVDGSPDIERALRLPGQIVVSASQSPY 262 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 +G + V+ K+ +G+ V + LV + Sbjct: 263 LLGREAVKLGVKLRRGDTSVRHVTVPVGLVTR 294 >UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus RepID=A7NNR8_ROSCS Length = 445 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 13/261 (4%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 T+ V++ F+ L+ G + A G ++ D++ A ++ V DL R L+ Sbjct: 6 TLGCVLNDARFTFWSILRHGVRARAADHGVTVIDQDARTVEA-QVEMVADLLRRRVHALI 64 Query: 88 INPT-DSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 + P ++ A +++A A +PVI +D +G V + + SD G + + + G Sbjct: 65 LGPARETRAFAQHLELARLARVPVIEVDGGILEGYVSATVRSDERQGLMRIAELLTARLG 124 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAH 205 E + + G R + A+ + ++A D+ R G N+ + L A Sbjct: 125 EQLCIALIAG-----PHNHRADILADALRQWPRIRIMAQAVGDWTRESGRNLTEEWLRAG 179 Query: 206 PDVQAVFAQNDEMALGALRALQT---AGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 + A+FA ND MALGA+ AL+ AGK V+VVGFDG P+ +A++ G + AT+ Q P Sbjct: 180 QPIDAIFAANDPMALGAVDALKAQNLAGK--VVVVGFDGLPEALRAIHSGHMLATVNQEP 237 Query: 263 DQIGAKGVETADKVLKGEKVQ 283 +IG + V+ A + L+G V+ Sbjct: 238 LRIGRQAVDVALQALRGVPVE 258 >UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1 Tax=Streptococcus uberis 0140J RepID=B9DT58_STRU0 Length = 322 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 35 TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 T+NNPF+ + +KE + G + DS N AK++ + G +++INP S Sbjct: 46 TMNNPFYQVINAEIEKEITEKGGIVYTRDSSLNSAKQVEQLHYFIKTGVDVIVINPVKSK 105 Query: 95 --AVGNAVKMANQANIPVITLDRQATKG-EVVSHIASDNVLGGK-IAGDYIAKKAGEGAK 150 + AV+ A Q I VI +D Q +K +V S I SDN G+ +A D ++KK A+ Sbjct: 106 DRNIKKAVEEAEQKGIKVIVIDSQLSKDVKVTSTIVSDNYHAGELLAKDLMSKKT--SAR 163 Query: 151 VIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQ 209 ++ L+ S +R +GF ++A +F V+ + + ++ ++ + D Sbjct: 164 ILLLEHKDAVS-GEQRIKGFLDTISAQSQFKVMTKLESLGQTEIAMPAVEKIIQSQKDFD 222 Query: 210 AVFAQNDEMALGALRALQTAGKSD--VMVVGFDGTPDGEKAV-NDGKLAATIAQLPDQIG 266 + A ND+ A+GA+ AL K D ++V G DG+PD + + + AT++Q P ++G Sbjct: 223 VIMALNDQAAIGAVAALDKQ-KVDHPILVYGVDGSPDMKNLLATTSDVTATVSQSPLKMG 281 Query: 267 AKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + A KV GE V +K V +K++ K+ Sbjct: 282 NQTARIAIKVANGESVPSKVTVPVKIITKK 311 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 Y L+ D++N+ ++++ +Q L +G +L+++P + ++ + IPVI LDR+ Sbjct: 81 YTLLYEDAENSTTRQISQIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRK 140 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 ++I DNV G++AG +I +++E+ G+ +S A+ER G + + Sbjct: 141 IETESYNAYIGGDNVEIGRLAGVFIGNHLKGKGRIVEIWGLPSSSPAQERHRGLLEELRK 200 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDV 234 + V+ ++R V+ L DV VFA ND MALGA + G + + Sbjct: 201 YPGIQVVKELNGQWERDTVGRVVAAELNTLKDVDLVFAHNDVMALGAYAVCKQKGIEKKL 260 Query: 235 MVVGFDGTPD---GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ 283 VG D P G +A+ DG L A+ L G + +ETA ++L G+ V+ Sbjct: 261 DFVGIDALPGPNAGMQAITDGILKASF--LYPTGGEEAIETATRILAGKSVK 310 >UniRef50_A8VYJ0 Transcriptional regulators-like protein n=2 Tax=Bacillales RepID=A8VYJ0_9BACI Length = 327 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 21/274 (7%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I L++ ++NPFF L + A GY +V+ ++ + KE + L + L++ Sbjct: 62 IGLLMPDISNPFFPELARAVEDVALTYGYTVVICNTDEDEQKERRYLDALMQKYIDGLIL 121 Query: 89 NPTDSDAVGNAVKMANQA-NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 + K ++ ++P++ LDR + E + + +DN G K A Y+A Sbjct: 122 T------TNHLTKEEYESLDLPLVALDRIIS--EDIPTVVADNFRGAKEATSYLADA--- 170 Query: 148 GAKVI-ELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHP 206 G K+I ++G G A R EGF++ V L + A F + V+ NLL +P Sbjct: 171 GCKLILHIRGPKGVHPADRRYEGFKETVEERGIANLVVE-AGFKINQAEEVVYNLLKDYP 229 Query: 207 DVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 + +FA +D MA GA++A AGKS D+ ++GFDG P GE V T+AQ Sbjct: 230 QIDGIFASSDVMAAGAMKAASRAGKSIPQDIQLIGFDGIPLGEMLVPS---LTTVAQPIY 286 Query: 264 QIGAKGVETADKVLKGEKV-QAKYPVDLKLVVKQ 296 ++GA K ++ + + Q Y +D LV++Q Sbjct: 287 EMGAVSARLLIKQIEKKPLDQLNYVLDPTLVIRQ 320 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 138/270 (51%), Gaps = 10/270 (3%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQD 77 A++ K I L+ + ++++K GA+ +A +LG + + + +P +++ ++D Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 + +LI PTD A+ V+ A A IPVI +D + VS +A+DN+ ++A Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAEMA 162 Query: 138 GDYIAKKAGEGAK--VIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL 195 D + + G K +I Q +GT+ RE G + ++ +Q + D+ + L Sbjct: 163 ADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRAL 222 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALG---ALRALQTAGKSDVMVVGFDGTPDGEKAVNDG 252 N ++LTAHPD+ + N+ +G A++ AGK V VVGFD + A+ + Sbjct: 223 NQALDILTAHPDLAGFYGTNEGSTIGIAMAIKQKDLAGK--VKVVGFDISQATINAIKEN 280 Query: 253 KLAATIAQLPDQIGAKGVETADKVLKGEKV 282 + A++ Q P +G KGVE A L+G++V Sbjct: 281 YIQASMVQNPYMMGYKGVEIAVDKLQGKEV 310 >UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribose) n=2 Tax=Agrobacterium RepID=B9K0T2_AGRVS Length = 329 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 19/304 (6%) Query: 1 MNMKKLATLVSAVALSA------TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADK 54 M ++ +A+ALSA T + K IAL+ + F++++ GA+ A Sbjct: 1 MERRRFLQSATALALSAPAVLAVTRAQAENKKFRIALIPGLTTDAFYITMHKGAEAAAAA 60 Query: 55 LGYNLVVLDSQN-NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 +G ++ + + NP ++ + + + +LI PTD+ + +K A A IP+IT+ Sbjct: 61 IGAQIIFQGAPDFNPVTQVPVLDAVIAKKPDAILIAPTDTTQLVQPLKKAADAGIPMITV 120 Query: 114 DRQATKGEV----------VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAA 163 D G+ +S+IASDNVLGG+IA +A G+ KV G S Sbjct: 121 DTFIGTGDYQTGAGDGDFPLSYIASDNVLGGEIAARSLALAIGDKGKVYVSNVKPGVSTT 180 Query: 164 RERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGA 222 +R +GF+ +A H VL +Q D D K + +Q + +PD+ VF N LG+ Sbjct: 181 DQREQGFKSEMAKHPGITVLETQFNDNDANKAASQLQAVYARNPDLAGVFGANLFSGLGS 240 Query: 223 LRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK 281 +Q AG+S + VV FD + G + IAQ P +IG GV +A L G+ Sbjct: 241 ANGVQQAGQSGTIKVVAFDAPGSVVDNLKSGLIDFAIAQHPAEIGYYGVISAYAHLTGQS 300 Query: 282 VQAK 285 + K Sbjct: 301 IPTK 304 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 20/299 (6%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 M L ++ + L S+ K I L L++ + ++ + + EA + Sbjct: 1 MKHPFLLVWLTLIVLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYDDVEI 60 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 ++ D+QNN ++ ++DL + +L+I+P S+ + + A +A IP I DR+ Sbjct: 61 IIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKVNT 120 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 + S + ++N G AG+Y A A ++E+ G+ TS A+ER +GF A+ Sbjct: 121 DQYTSFVGANNYEIGLAAGNYAANYLPPNAIILEIWGLTQTSPAQERHKGFVDALRER-- 178 Query: 180 NVLASQPADFDRIKGLNV-----MQNLLTAHPD-VQAVFAQNDEMALGA---LRALQTAG 230 + F +I+G + M+ HP+ + V+A ND MA+ A A + Sbjct: 179 -----EDLSFRKIEGQWLVDTARMELRKLEHPEQIDFVYAHNDMMAIAAREYFMAWDSIR 233 Query: 231 KSDVMVVGFDGTPD-GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 ++ ++G D G +AV DG++ A+ L G + + TA ++++GE V P+ Sbjct: 234 GRELRIIGVDAVAGAGLEAVEDGRINASF--LYPTGGEQVIRTAMRIIQGEPVDKFIPL 290 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 355 8e-97 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 348 1e-94 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 338 1e-91 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 330 4e-89 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 329 9e-89 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 328 2e-88 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 319 6e-86 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 318 2e-85 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 312 1e-83 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 310 5e-83 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 303 5e-81 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 301 1e-80 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 292 1e-77 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 291 2e-77 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 290 4e-77 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 281 3e-74 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 276 5e-73 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 274 2e-72 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 274 2e-72 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 271 2e-71 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 270 3e-71 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 269 6e-71 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 268 2e-70 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 267 4e-70 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 266 5e-70 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 266 5e-70 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 266 7e-70 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 264 2e-69 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 263 5e-69 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 263 6e-69 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 261 1e-68 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 261 1e-68 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 261 2e-68 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 261 3e-68 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 260 3e-68 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 260 4e-68 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 260 5e-68 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 259 9e-68 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 258 1e-67 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 258 2e-67 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 258 3e-67 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 257 3e-67 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 257 4e-67 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 256 7e-67 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 256 8e-67 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 256 9e-67 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 254 2e-66 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 253 5e-66 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 253 5e-66 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 253 7e-66 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 252 9e-66 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 252 9e-66 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 251 2e-65 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 251 2e-65 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 251 3e-65 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 250 4e-65 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 249 8e-65 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 249 1e-64 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 248 2e-64 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 248 2e-64 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 248 2e-64 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 248 2e-64 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 248 2e-64 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 247 3e-64 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 247 3e-64 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 246 6e-64 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 246 6e-64 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 246 6e-64 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 246 8e-64 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 246 9e-64 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 246 9e-64 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 246 1e-63 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 245 1e-63 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 245 2e-63 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 244 2e-63 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 244 3e-63 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 244 3e-63 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 243 4e-63 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 243 5e-63 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 243 6e-63 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 242 1e-62 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 242 1e-62 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 242 1e-62 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 242 1e-62 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 242 1e-62 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 241 2e-62 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 241 2e-62 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 241 2e-62 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 241 2e-62 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 241 3e-62 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 241 3e-62 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 240 4e-62 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 240 4e-62 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 240 5e-62 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 240 5e-62 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 239 8e-62 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 239 8e-62 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 239 8e-62 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 239 9e-62 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 239 9e-62 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 239 1e-61 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 239 1e-61 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 239 1e-61 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 239 1e-61 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 238 1e-61 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 238 2e-61 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 238 2e-61 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 238 3e-61 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 237 4e-61 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 237 4e-61 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 237 4e-61 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 236 1e-60 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 235 1e-60 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 235 1e-60 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 234 2e-60 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 234 2e-60 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 234 3e-60 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 234 3e-60 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 234 3e-60 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 234 3e-60 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 234 3e-60 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 234 3e-60 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 234 4e-60 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 233 5e-60 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 233 6e-60 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 233 7e-60 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 232 1e-59 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 232 1e-59 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 232 1e-59 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 232 1e-59 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 231 3e-59 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 230 4e-59 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 229 6e-59 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 229 6e-59 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 229 7e-59 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 229 8e-59 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 228 2e-58 UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesor... 228 2e-58 UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc... 228 2e-58 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 228 2e-58 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 228 2e-58 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 228 3e-58 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 227 4e-58 UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional... 227 5e-58 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 226 5e-58 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 226 5e-58 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 226 5e-58 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 226 5e-58 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 226 6e-58 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 226 6e-58 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 226 7e-58 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 226 8e-58 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 226 9e-58 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 225 1e-57 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 225 1e-57 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 225 1e-57 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 225 1e-57 UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Ba... 225 2e-57 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 224 2e-57 UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional... 224 2e-57 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 224 3e-57 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 224 3e-57 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 224 3e-57 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 224 4e-57 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 224 4e-57 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 224 4e-57 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 223 4e-57 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 223 5e-57 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 223 6e-57 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 223 6e-57 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 222 7e-57 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 222 9e-57 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 222 1e-56 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 222 1e-56 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 222 1e-56 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 221 2e-56 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 221 2e-56 UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_... 221 3e-56 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 221 3e-56 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 220 4e-56 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 220 6e-56 UniRef50_C1D5Z3 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 219 6e-56 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 219 6e-56 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 219 7e-56 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 219 7e-56 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 219 7e-56 UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri... 219 7e-56 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 219 8e-56 UniRef50_A7B2I9 Putative uncharacterized protein n=5 Tax=Clostri... 219 8e-56 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 219 9e-56 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 219 9e-56 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 219 1e-55 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 218 1e-55 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding prot... 218 2e-55 UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 218 2e-55 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 218 2e-55 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 218 2e-55 UniRef50_C2DYY0 Periplasmic sugar-binding protein n=8 Tax=Lactob... 217 3e-55 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 217 3e-55 UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon... 217 3e-55 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 217 4e-55 UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerot... 216 6e-55 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 216 7e-55 UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional... 216 9e-55 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 216 1e-54 UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_Q89VC4 ABC transporter sugar-binding protein n=3 Tax=Br... 215 1e-54 UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibac... 215 1e-54 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 215 1e-54 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 215 1e-54 UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional... 215 1e-54 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 215 2e-54 UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia... 214 2e-54 UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding... 214 3e-54 UniRef50_A8L4W4 Periplasmic binding protein/LacI transcriptional... 214 3e-54 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 213 5e-54 UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional... 213 5e-54 UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette tran... 213 5e-54 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 213 6e-54 UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic com... 213 6e-54 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 212 8e-54 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coproco... 212 1e-53 UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus... 212 1e-53 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 211 2e-53 UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional... 211 2e-53 UniRef50_B0K1M1 Periplasmic binding protein/LacI transcriptional... 211 2e-53 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 211 2e-53 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 211 2e-53 UniRef50_C6P8L1 Transcriptional regulator, LacI family n=1 Tax=T... 211 2e-53 UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional... 211 2e-53 UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 211 3e-53 Sequences not found previously or not previously below threshold: >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 355 bits (913), Expect = 8e-97, Method: Composition-based stats. Identities = 208/293 (70%), Positives = 253/293 (86%), Gaps = 1/293 (0%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKKLATL+SA L++TVS A A+DT+A+VVSTLNNPFFV++KDGA+ A +LGYNL+VL Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVL 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 DSQN+P+KEL+NV+DLT+RG K +LINPTDSDAV NA+++AN++ IPV+TLDR A++G+V Sbjct: 61 DSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGDV 120 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL 182 VSHIASDNV+GG++AG++I +K GE AKVI+L+GIAGTSAARERGEGF AV +L Sbjct: 121 VSHIASDNVVGGEMAGNFIVEKVGEKAKVIQLEGIAGTSAARERGEGFMNAVKGSHMELL 180 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 ASQPADFDR KGLNVM+NLL A+PDVQAVFAQNDEMALGALRA+Q +GK +VM+VGFDGT Sbjct: 181 ASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK-EVMIVGFDGT 239 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DG AVN GKLAATIAQ PD IGA G+ETADKVLKGE+V+ PV LK+V K Sbjct: 240 DDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLKVVTK 292 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 207/295 (70%), Positives = 251/295 (85%), Gaps = 1/295 (0%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M MKKL TL+SA LS +VS A A+DT+A+V+STLNNPFFV++KDGA+ +A +LGYNL+ Sbjct: 1 MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 VLDSQN+P+KEL+NV+DLTVRG K +LINPTDSDAV NA+++AN++ IPV+TLDR A++G Sbjct: 61 VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 EVVSHIASDNV+GG++AG +I K G AKVI+L+GIAGTSAARERGEGF AV K Sbjct: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQ 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD 240 +LASQPADFDR KGLNVM+NLL A+PDVQAVFAQNDEMALGALRA+Q +GKS VM+VGFD Sbjct: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS-VMIVGFD 239 Query: 241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GT DG AV G+LAAT+AQ PD IGA G+ETADK+LKGEKV+A PV LK++ K Sbjct: 240 GTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 141/268 (52%), Positives = 196/268 (73%), Gaps = 2/268 (0%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 I + +STLNNPFFVS+++G ++ A K V+ D+QN+ + + V+DL +G +++ Sbjct: 51 KIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVEDLITQGVDLIV 110 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 INP DS A+ +V+ AN+ANIPVI +DR + +GE+VS IAS+NV GGK+AG+YI +K GE Sbjct: 111 INPVDSTAIATSVEKANEANIPVICVDRGSDQGELVSFIASNNVEGGKLAGEYILEKVGE 170 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 A+VI+L+GI G S+ RERGEGF++A K N+LASQ A+FDR +G+ VM+NLL AHPD Sbjct: 171 NAEVIQLEGIPGASSTRERGEGFEEA-TNGKINLLASQTANFDRAEGMTVMENLLQAHPD 229 Query: 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGA 267 V+AVF QNDEMALGA A++ +GK DV +VGFDG D KAV +G L+AT+AQ P ++G Sbjct: 230 VKAVFCQNDEMALGASEAIKASGK-DVTIVGFDGNEDAIKAVEEGNLSATVAQKPKEMGK 288 Query: 268 KGVETADKVLKGEKVQAKYPVDLKLVVK 295 +ETA K LKGE+V+ L+L+ K Sbjct: 289 LAIETAIKYLKGEEVEETVDSPLELIKK 316 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 330 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 155/306 (50%), Positives = 207/306 (67%), Gaps = 14/306 (4%) Query: 3 MKKLATLVSAVAL----SATVSANAMAKD--------TIALVVSTLNNPFFVSLKDGAQK 50 MKK T+ +A+AL + ++ AK I L VSTL NPFFVSLK+G K Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 EA K G ++V+D+Q++ AK+ +V+DL +G LLINP DS A+ AV+ AN IPV Sbjct: 61 EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 111 ITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGF 170 +TLDR A G+V + +ASDNV GG++A D+I ++ G+GAKV EL+G+ G SA RERG GF Sbjct: 121 VTLDRSAENGKVETLVASDNVKGGQMAADFIVEQLGKGAKVAELEGVPGASATRERGSGF 180 Query: 171 QQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 + A K NV+A Q ADFDR KGLNVM+NLL +PD+QAVFA NDEMALGA+ A++++G Sbjct: 181 HKT-ADDKLNVIAKQTADFDRTKGLNVMENLLQGNPDIQAVFAHNDEMALGAIEAIRSSG 239 Query: 231 KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 K +++VVGFDG D KAV G ++ATIAQ P+ IG V+ A +L G+KV+ P L Sbjct: 240 K-EILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDILNGKKVEKTIPAPL 298 Query: 291 KLVVKQ 296 KL K+ Sbjct: 299 KLETKK 304 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 182/298 (61%), Positives = 243/298 (81%), Gaps = 6/298 (2%) Query: 3 MKKLA-----TLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 MK+LA L+SA LS + S +A A+D IA+V+ST+NNPFFV++KDGA+ +A +LGY Sbjct: 1 MKRLAHHKVSVLLSAALLSVSTSFSASAQDAIAIVLSTMNNPFFVTMKDGAEAKAAELGY 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 L+ LDSQN+P+KELANV+DLT+RG K +LINPTD+ AV NA++ AN+ANIPV+TLDR A Sbjct: 61 KLIALDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTA 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 G++VSHIASDN+ GG++AG++IA++ G+ AKVI+L+GIAGTSAARERGEGF AV A+ Sbjct: 121 AHGDIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIAGTSAARERGEGFSNAVTAN 180 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 F +L+SQPADFDR KGLNVM+N+L A+ DVQAVFAQNDEMALGALRA++ AGK D++V+ Sbjct: 181 NFELLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGK-DILVI 239 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GFDGT +G AV +L+AT+AQ P+ +GA + TAD++LKG+ V+ PV LK++ + Sbjct: 240 GFDGTDEGIAAVRRQQLSATVAQQPELLGATAIMTADRILKGQVVEKSIPVALKIITQ 297 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 150/307 (48%), Positives = 205/307 (66%), Gaps = 15/307 (4%) Query: 3 MKKLATLVSAVALSATVS-----------ANAMAKD--TIALVVSTLNNPFFVSLKDGAQ 49 MKK +++ ++L + +N+ K TI L VSTLNNPFFVSLK G + Sbjct: 1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60 Query: 50 KEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 109 KEA K G ++++D+QN+ +K+ ++V+DL +G LLINPTDS A+ AV+ AN +P Sbjct: 61 KEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVP 120 Query: 110 VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEG 169 V+T+DR A +G+V + +ASDNV GG++A +IA K G+GAKV EL+G+ G SA RERG G Sbjct: 121 VVTIDRSAEQGKVETLVASDNVKGGEMAAAFIADKLGKGAKVAELEGVPGASATRERGSG 180 Query: 170 FQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 F +A K V+ Q ADFDR KGL VM+NLL HPD+QAVFA NDEMALGAL A+ ++ Sbjct: 181 FHN-IADQKLQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVFAHNDEMALGALEAINSS 239 Query: 230 GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 GK D++V+GFDG D ++ D KL+AT+AQ P+ IG E AD +L G+KVQ Sbjct: 240 GK-DILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLATEAADDILHGKKVQKTISAP 298 Query: 290 LKLVVKQ 296 LKL ++ Sbjct: 299 LKLETQK 305 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 154/307 (50%), Positives = 202/307 (65%), Gaps = 16/307 (5%) Query: 3 MKKLATLVSAVALSATVSANA---------------MAKDTIALVVSTLNNPFFVSLKDG 47 M KL + A AL V+A + K I L VST +NPFFV+LK G Sbjct: 1 MSKLMKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKG 60 Query: 48 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAN 107 A++EA K G L+ +D+Q++PAK++A+++DL + K++L+NPTDSDAV AVK AN A Sbjct: 61 AEEEAQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAAG 120 Query: 108 IPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG 167 IPV+TLDR GEV SH+ASDNV GGK+A +Y+ +K G V+EL+GI G SAARERG Sbjct: 121 IPVVTLDRSVNGGEVASHVASDNVAGGKMAAEYLLEKIGNQGDVVELEGIPGASAARERG 180 Query: 168 EGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 226 +GF + K V+ QPADFDR KGL+VM+N+L A+ +V+ VFA NDEMALGA++AL Sbjct: 181 QGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQANKNVKGVFAHNDEMALGAVQAL 240 Query: 227 QTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 + AG DV VVGFD T D AV GK++AT+AQ P IG V+ A K++ G+ V Sbjct: 241 EAAGMKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGKTAVDAAKKIIDGQPVDKSL 300 Query: 287 PVDLKLV 293 PV L LV Sbjct: 301 PVPLDLV 307 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 137/308 (44%), Positives = 191/308 (62%), Gaps = 15/308 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDT--------------IALVVSTLNNPFFVSLKDGA 48 M + + + V S + ++ T + VSTLNNPFFV++ +G Sbjct: 7 MLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFVAMSNGV 66 Query: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 Q+EA KLG + +L+ N+PA +L V+DL + +++NPTDS ++ AV+ AN+A+I Sbjct: 67 QEEAKKLGVQVTILNGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAVEQANRAHI 126 Query: 109 PVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 168 PVITLDR TKG V IAS++V GK+A D + K G +V+ELQG+ GTSA +R + Sbjct: 127 PVITLDRSVTKGNVACFIASNSVEAGKMAADELIKALGGKGQVVELQGVIGTSAEADREK 186 Query: 169 GFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 GF + + A V+A Q A+FDR + LNVMQN+L AHP++Q VFAQNDEMALGAL+A+Q Sbjct: 187 GFDEEIGKAPGIRVVARQTANFDRSQALNVMQNILQAHPNIQGVFAQNDEMALGALKAIQ 246 Query: 228 TAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 AGK ++ +VG DG + V+ G L A IAQ P Q G GVE A K+++GEKV + Sbjct: 247 EAGKHNIKIVGIDGEKEAVNDVHKGLLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQVN 306 Query: 288 VDLKLVVK 295 L LV K Sbjct: 307 SPLHLVEK 314 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 147/293 (50%), Positives = 209/293 (71%), Gaps = 5/293 (1%) Query: 7 ATLVSAVALSATVSANAMAKDT-IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 A+++ + + + A++ I +VVSTLNNPFFVSLK+GA+K++ +LGY L+VLDSQ Sbjct: 13 ASILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQ 72 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH 125 N+PAKE +N++DL G +L++NPTDSDAV N+V++AN+ANIPVIT+DRQA GEVVSH Sbjct: 73 NDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGEVVSH 132 Query: 126 IASDNVLGGKIAGDYIAKKAGEG--AKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVL 182 IASDN+ GG++A +I + KV+ELQGI G SA RERG+GF + ++ Sbjct: 133 IASDNIKGGELASSFIIDELKNKKDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKLI 192 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 +SQ A+FDR +GL+VM+N++ A D AVFA NDEMALGA +AL+TA K ++VVGFDG Sbjct: 193 SSQAANFDRAQGLSVMENIIQAQSDFDAVFAHNDEMALGAAKALKTANK-KIIVVGFDGD 251 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 D + A+ +++AT+AQ P +G+ +ETA K+ G+ + PV L+L+ K Sbjct: 252 EDAKTAIEKSEISATVAQQPALMGSTSIETAVKISNGQNISKNIPVKLRLITK 304 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 123/278 (44%), Positives = 183/278 (65%), Gaps = 2/278 (0%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL 78 V+ A + + +STL+NPFFVS+++G Q A K N+ V D+QN+ AK+ +N++DL Sbjct: 40 VTKKAPKDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDL 99 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 + +L+INP DS A+ AVK AN A IPVIT+DR + G+V++ +AS++ GG++A Sbjct: 100 IQKKVDVLIINPVDSSAITPAVKDANDAGIPVITVDRSSDGGKVLTLVASNSTKGGQMAA 159 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVM 198 Y+ +K G+ AK+ ELQGI G SA RERG+GF A K ++++ Q A FDR KGL V Sbjct: 160 KYMIEKLGKDAKIAELQGIPGASATRERGKGF-DGAAKGKLDIVSKQTAGFDRAKGLTVT 218 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 +N+L + D+ +F+QNDEMALGA++A++ AGK + +VGFDG DG KAV G +AAT+ Sbjct: 219 ENILQGNGDIVGIFSQNDEMALGAVQAVKAAGK-KITIVGFDGEADGIKAVKAGDMAATV 277 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 AQ P+++G ++ A G+ V+ L LV + Sbjct: 278 AQKPEEMGRLALQAAYDHFNGKTVKKNVESPLSLVTTE 315 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 113/287 (39%), Positives = 183/287 (63%), Gaps = 2/287 (0%) Query: 11 SAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK 70 SA A +A + K I L ++T NPFFV +KDG QK AD+ G L + D+Q++P Sbjct: 50 SAEAENAGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTI 109 Query: 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDN 130 ++ +V++L + ++I+ DSDA+ ++++ N+A IPV T+DR+A GEV+SHI D Sbjct: 110 QMKDVENLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEVISHIGYDA 169 Query: 131 VLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADF 189 + G++AG Y+ G K++E+QGI GT+ A+ R +GF + + + ++A Q ADF Sbjct: 170 IKSGRMAGQYLVDTLGGKGKIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVACQVADF 229 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKA 248 DR KG++VM+N+L A+P++ ++A NDEM LGAL A++ AG++D +V +G D D A Sbjct: 230 DRAKGMSVMENILQANPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCDAIDDTLDA 289 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + GK+ ATIA+ P +G + TA L+G++V+ +D +LV + Sbjct: 290 MKAGKVDATIAEPPFFLGKAILNTAYDYLEGKQVEPYVILDNQLVTQ 336 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 156/302 (51%), Positives = 216/302 (71%), Gaps = 8/302 (2%) Query: 1 MNMKKLAT---LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 MN+ K L+ + +++ + K I +V+STLNNPFFV++KDGA+KEA+KLGY Sbjct: 1 MNINKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGY 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 +LVVLDSQN+PAKE ANV+DL G LLINPTDSDAV V++AN++NIPVITLDRQA Sbjct: 61 DLVVLDSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQA 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEG---AKVIELQGIAGTSAARERGEGFQQAV 174 G++ SHIASDN+ GG++A +Y+ K + V+E+QGI G SA R+RGEGF + Sbjct: 121 NGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFHNIM 180 Query: 175 AAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD 233 + KFN ++ Q ADFDR KGL VM+N++ A+P++Q VFA NDEMALGA++A++ +G + Sbjct: 181 DKNDKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKASGINA 240 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +V+GFDG D + +++ ++ A IAQ PD IGA GVE A+K+ KGE ++ K DLK+ Sbjct: 241 -LVIGFDGNDDAKDSIDANEMTAIIAQQPDLIGALGVELANKIYKGESIKNKIAADLKVY 299 Query: 294 VK 295 K Sbjct: 300 TK 301 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 114/267 (42%), Positives = 161/267 (60%), Gaps = 1/267 (0%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLI 88 I + +ST NNP+FVS+ + + A + L V D+QN+ A +L NVQ+ + +LI Sbjct: 51 IGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVDAILI 110 Query: 89 NPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 148 NP DSDA+ A+K AN A+IPVI +DR + G V++ +ASDNV GK+A + K G+ Sbjct: 111 NPVDSDAIVPAIKAANNAHIPVIAMDRGSNGGTVLTTVASDNVAAGKMAAQAVEKLVGKN 170 Query: 149 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDV 208 KV+EL G G SA +RG+GF N+L+SQ A+FDR GLN QN+L +H DV Sbjct: 171 VKVLELSGTPGASATIDRGKGFNSEAKTLGLNILSSQSANFDRTTGLNTTQNMLQSHKDV 230 Query: 209 QAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAK 268 QA+FAQNDEMALGA +A+Q G + + G DG + A+ G + ATIAQ P +IG Sbjct: 231 QAIFAQNDEMALGAAKAVQATG-QKIAIFGIDGESETHDAIKAGTMTATIAQQPAKIGEM 289 Query: 269 GVETADKVLKGEKVQAKYPVDLKLVVK 295 ++ +G+K+ + LV K Sbjct: 290 ALQATYDYYQGKKIAHMINSPIYLVDK 316 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 175/310 (56%), Gaps = 14/310 (4%) Query: 1 MNMKKLATLVSAVALSATVSANAMAK------------DTIALVVSTLNNPFFVSLKDGA 48 M K+L ++ + + + V +A+V+ LN+ ++ +++ GA Sbjct: 1 MKGKRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGA 60 Query: 49 QKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 A +LG + VL +++ + + + ++D V+G L++ P +A A + Sbjct: 61 NDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKE 120 Query: 107 NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 IPV+ +D A + S + + N+ GK+ G+YI+KK +G + I ++G+ G ER Sbjct: 121 KIPVVLIDTDANWDKKKSFVGTGNIAAGKLGGEYISKKLKKGDEAIIIRGVPGDRTQDER 180 Query: 167 GEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 226 +G Q+A+ A V+ QPA+ +R K ++VM+NLL HP+++ VF NDEMALGA++AL Sbjct: 181 TQGAQKALEAAGIKVVEIQPANSEREKAISVMENLLQTHPNIKGVFCTNDEMALGAVKAL 240 Query: 227 QTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 Q AGK +++ +G DG+PD K++ +G L T+AQ IG KGVETA KVL+GEKV+ + Sbjct: 241 QQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIGKKGVETAVKVLRGEKVETRI 300 Query: 287 PVDLKLVVKQ 296 LV KQ Sbjct: 301 DTGTTLVDKQ 310 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 178/318 (55%), Gaps = 25/318 (7%) Query: 3 MKKLATLVSAVALSATVSANAMAKD-------------TIALVVSTLNNPFFVSLKDGAQ 49 K LA L+S + + + + +K+ T+ L +S+L+N FF+ ++ G + Sbjct: 5 KKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGMEKGVK 64 Query: 50 KEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 109 + ++G L+ ++ + AK+L++++DL + IL++N D+DA+ AVK A +ANIP Sbjct: 65 DKTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAKEANIP 124 Query: 110 VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE----GAKVIELQGIAGTSAARE 165 +I LDR A ++ + + +DNV G+ A + I K + G V+E++G+ GTSAAR+ Sbjct: 125 IIFLDRGANSEDMTTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEIEGLQGTSAARD 184 Query: 166 RGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 224 RG+GF + HK ++A Q DF++ K +NVMQN+L A+P + AVF ND+ +GA + Sbjct: 185 RGKGFHNVMDKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPKIDAVFGHNDDCTVGAEK 244 Query: 225 ALQTAG-------KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 A+ + K + VVG DG ++V G + +I+Q P +G + VE K + Sbjct: 245 AIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSISQDPIGMGVQAVEVGLKAI 304 Query: 278 KGEKVQAKYPVDLKLVVK 295 KGE+V+ + K Sbjct: 305 KGEQVEKHIYTKFFPITK 322 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 110/293 (37%), Positives = 162/293 (55%), Gaps = 10/293 (3%) Query: 14 ALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELA 73 + + K +A+V+STLNNP+FV L + A++ A++LGY + DSQN+ AKE A Sbjct: 21 SFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESA 80 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVL 132 + + G ++ NPTD+D VK A +A IPV +DR G V+ I SDN Sbjct: 81 HFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDNYY 140 Query: 133 GGKIAGDYIAKKAGEG---AK---VIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQ 185 GG + G+Y K E AK EL GI +R GF V + F ++A Q Sbjct: 141 GGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ 200 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDG 245 A+FDR V + +L AHP+++A++ ND MALGA++A + AG++D+ + GFDG D Sbjct: 201 SAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDV 260 Query: 246 EKAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGE-KVQAKYPVDLKLVVKQ 296 A+ +GK + ATI Q P + VE AD+ L+GE PV ++LV ++ Sbjct: 261 INAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRE 313 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 276 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 18/311 (5%) Query: 4 KKLATLVSAVALSATVSA-----------------NAMAKDTIALVVSTLNNPFFVSLKD 46 K LA + SA L A ++A + + TI +ST NPFFV +++ Sbjct: 8 KTLAVVASATLLCAGLAACNRDSGGNNATGDHTTTGSASAKTITFALSTQANPFFVQMRE 67 Query: 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 AQK+AD+LG + D+ ++ A + + + GT +++INPTDSDA+ AV+ Sbjct: 68 SAQKKADELGLAINFQDAADDSATQSNQLANAAASGTGVVIINPTDSDAMAPAVQQLVDE 127 Query: 107 NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 IPV+ +DR V S+IASDN GGK A ++ +++ LQG G+SA+RER Sbjct: 128 KIPVVAVDRAVNNANVASYIASDNETGGKQAAKVLSDAINGEGEILVLQGKTGSSASRER 187 Query: 167 GEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRA 225 G+GF + + + V+A Q A+F+R KGL+V NLL AHP+V+A+FA+NDEMALGA+ A Sbjct: 188 GKGFDEGLKDNPNIKVVAKQTAEFERAKGLDVTTNLLQAHPNVKAIFAENDEMALGAIEA 247 Query: 226 LQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 L + DV V+GFDG D KA+ DG++ A+IAQ P ++ + V A K+LKGE K Sbjct: 248 LGSKAGKDVKVIGFDGAEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATKK 307 Query: 286 YPVDLKLVVKQ 296 V++ K+ Sbjct: 308 MQVEVVAATKE 318 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 274 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 99/272 (36%), Positives = 155/272 (56%), Gaps = 4/272 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 + + + + F+V L+ G Q+ AD G L+ D + A + V+D +G Sbjct: 59 QIVVGFSNWSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGVDG 118 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++ P DS+A + NQA IP++T D G+V SHIASDN LGG++A +I ++ Sbjct: 119 IVLCPIDSNAAVTEAETINQAGIPLVTTDIAVAGGDVASHIASDNTLGGQLAAQFIGEQL 178 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLT 203 G KV + ++ ER GF +A ++A Q + R KGL+VM+N+L Sbjct: 179 GGTGKVALIN-NPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQ 237 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK-LAATIAQLP 262 ++PDVQ VFA ND M LGAL+A+Q A + D+++VGFD T + K + +G L A++AQ P Sbjct: 238 SNPDVQGVFAVNDMMGLGALQAVQAAQRDDIVIVGFDATEEAVKYIKEGSALKASVAQNP 297 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++G +ET KV+ GE+V+ PV ++LV Sbjct: 298 VELGKTTMETMLKVIAGEQVEKNIPVPVELVT 329 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 150/284 (52%), Gaps = 4/284 (1%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD-KLGYNLVVLDSQNNPAKELAN 74 +A S + K I + ++ + L+DG ++ + ++ +D+ N+ +K+L+ Sbjct: 46 TAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQ 105 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLG 133 V++ + +++ P D+ + V ANQANIP++ ++R + +++ S+++ Sbjct: 106 VENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDKATAYVGSESIKA 165 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G + + +AK K+ + G G A +R EG +Q + + V+ A++DR Sbjct: 166 GIMQMEEVAKLLNGKGKIAIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLEGTAEWDRA 225 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVND 251 KG+++M+N L + + AV NDEMA+GA+ AL+ GK DV+V G D TPD + V + Sbjct: 226 KGMSLMENWLQSGKKIDAVVCNNDEMAIGAIMALEDEGKLDDVIVAGVDATPDALEYVKE 285 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GKL T+ Q G G+E A K KGEKV+ + +LV K Sbjct: 286 GKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEKFNWIPYELVTK 329 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 159/278 (57%), Gaps = 8/278 (2%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGT 83 +K TI + + L P+ V + + +K A+K+ +++ D+ + +K++++V++ + Sbjct: 47 SKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVENFMTKKV 106 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 +L+I+P ++ + + VK A IPV+ LDR+ ++I +DNV G+ AG+Y Sbjct: 107 DLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGEAFTTYIGADNVQIGRQAGEYFKN 166 Query: 144 -KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLL 202 +G K+++L+G++G++ A ER +GF + +A K V+ + +++R G M LL Sbjct: 167 TLLPQGGKIVQLKGLSGSTPAAEREKGFMEGIAGSKIEVVDTADGEWERSVGQQKMDALL 226 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP---DGEKAVNDGKLAATIA 259 AHPD+QAV+AQND MA GA A Q AG+ D+ VG DG P G KAV G+L+AT Sbjct: 227 KAHPDIQAVYAQNDPMAEGAWLAAQAAGRKDLKFVGIDGLPIESGGIKAVEQGRLSATNL 286 Query: 260 QLPDQIGAKGVETADKVL-KGEKVQAKYPVDLKLVVKQ 296 G + VE A K+L + V + + +LV ++ Sbjct: 287 YP--TGGEEAVEAARKLLIDCQPVPKEQTLPTELVTRE 322 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 159/304 (52%), Gaps = 10/304 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 M + K + A A + T+ L++ +L N FF ++ GA+ A++ G Y L Sbjct: 38 MKLLKNTAAAVTALALSVGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYEL 97 Query: 60 VVLDSQN--NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + + QN + ++ V++ +G +++ P DS A+ ++ A +A I VI D Sbjct: 98 LAVGMQNETDFESQINAVENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVAL 157 Query: 118 TKGEV------VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 G + ++ + DN +G ++AG+ + + GEG +V+ ++G G A +R GF+ Sbjct: 158 DTGAMEQQGIELAFVGPDNRMGAEMAGNALGEALGEGGRVVIIEGNPGADNATQRRLGFE 217 Query: 172 QAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 A+A H +L S+ A ++ + V +LTAHPD+Q V A ND MA+G + AL AG+ Sbjct: 218 DAIATHGLELLESRTAHWETEEANQVFAAMLTAHPDLQGVMAANDSMAIGVIEALDAAGR 277 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQAKYPVDL 290 D++VVGFD P + DG++ AT+ Q + A ++ A +VL+ G ++ + Sbjct: 278 DDILVVGFDAVPAVLPMIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVRTPI 337 Query: 291 KLVV 294 +LV Sbjct: 338 ELVT 341 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 269 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 86/271 (31%), Positives = 154/271 (56%), Gaps = 4/271 (1%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 I + ++ N F V++ D + +A ++G L+ +D++ + K++ V+ +G ++ Sbjct: 33 VIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQGVDAII 92 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 +NP + +A A+K+A A IP+I ++ + T + + + SD+ +IA YIA+K G Sbjct: 93 MNPAEVEASSPAIKLAMDAKIPIINVNSE-TSAKPTAFVGSDDTESARIAMKYIAEKLGG 151 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP 206 ++ + G G +A +R G + + A+ +LA Q ++DR KG+++ +N + ++ Sbjct: 152 KGNILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWDRAKGMSLTENWIQSYG 211 Query: 207 D-VQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 D + A+FAQNDEM +GA++AL+ AG K V+VV D PD +AV G L AT+ Q + Sbjct: 212 DKINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDALQAVKKGTLDATVFQNAKE 271 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G K +ETA K K E + + + +LV K Sbjct: 272 QGGKAIETAVKAAKKEAFEKEVLIPFQLVDK 302 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 155/300 (51%), Gaps = 8/300 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M ++ + L S A A I + ++ +++ F ++ G ++ A K L Sbjct: 1 MPFCKLFIAVLLL--VSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFE 58 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--- 119 D+Q + +++ VQ + +++ P D+ A N + A +A +P++ ++R + Sbjct: 59 DAQGDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVL 118 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178 + V+ +AS+++ G++ Y+A+K G + + G ++ +R EG +Q + + Sbjct: 119 PKGVTTVASNDIEAGQLQMRYLAEKMGGKGTIALIMGDLAQNSTHDRSEGVKQVLKDYPG 178 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMV 236 ++ Q A++ R KG+++ N L A A+ A NDEMA+GA ALQ AG K +V + Sbjct: 179 ITIVEQQTAEWQRNKGMDLTSNWLLAGRTFDAIVANNDEMAIGAAMALQQAGKAKGEVAI 238 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 VG DG PDG A+ G LAA++ Q P +++A K++KGE V A+ V +L+ + Sbjct: 239 VGIDGLPDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGEPVDAEVWVPFQLITPE 298 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 107/297 (36%), Positives = 168/297 (56%), Gaps = 7/297 (2%) Query: 5 KLATLVSAVALSATVSANAMAKDTIALVV--STLNNPFFVSLKDGAQKEADKLGYNLVVL 62 KL L A +L+ + A A DT+ L + NPF+ S++ GA+++A +LG +VVL Sbjct: 2 KLVKLFLASSLAIIIGTLAFA-DTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVL 60 Query: 63 DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 +++ ++ V+D +G + I TD +A+ ++ A A IPV+ +D + Sbjct: 61 SPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGIN- 119 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + V+ I +DN G K+A D+I + G+ V LQGI S + R +G + N Sbjct: 120 KGVTFIGTDNKAGAKMAADFICDRVSRGSDVAILQGIITQSTGKARADGAHAGLKGCGLN 179 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGF 239 ++A QPA++DR +G VM+N+LT + ++AVFA ND MALGA+ AL+ A +DV+VVGF Sbjct: 180 IVAEQPANWDRAQGRTVMENILTRNQKLKAVFASNDNMALGAVEALKDADMLNDVIVVGF 239 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 D PD K++ G++ ATIAQ +GA GVE A ++ KG + LV K+ Sbjct: 240 DANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSLPPVVDTGTLLVTKK 296 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 93/296 (31%), Positives = 158/296 (53%), Gaps = 7/296 (2%) Query: 6 LATLVSAVALSATVSAN---AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 + L+++ S T + K + + ++ N F V++ D KEA K G L+ + Sbjct: 15 IFLLLASCNQSGTSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITV 74 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 D++ + K++ V+ + +++NP + +A AV A A IP+I ++ + T + Sbjct: 75 DAERSALKQVEQVESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSE-TSSKP 133 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNV 181 + + SD+V +IA +IA K G V+ + G G +A +R +G ++ + + + Sbjct: 134 SAFVGSDDVESARIAMKFIADKLGGKGNVVMMHGYMGQAAQIKREQGAREILKQYPNLKL 193 Query: 182 LASQPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAG-KSDVMVVGF 239 LA Q ++DR K +++M+N + ++ + AVFA NDEM LGA++AL AG K V+VV Sbjct: 194 LAHQTGEWDRAKAMSLMENWIQSYGSQINAVFAHNDEMGLGAVKALTDAGLKDKVIVVSI 253 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 D PD +AV G L AT+ Q +Q GAK + TA K KG+ + V +LV K Sbjct: 254 DAIPDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQPFDKETLVPFQLVTK 309 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 101/272 (37%), Positives = 158/272 (58%), Gaps = 5/272 (1%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 TI + T +PF+V LK +K AD G L+V + + K++++V+D VRG ++ Sbjct: 30 TIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDFIVRGVDAIV 89 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 ++P DS V A+ A +A IPVIT+D A EV +H+A+DN GG+IAG+ +AK Sbjct: 90 LSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETMAKVLNG 149 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP 206 +V + + R+R GF++AV+ + ++A QP R + LN QN+L AHP Sbjct: 150 KGQVAIID-YPVVQSVRDRVAGFKEAVSKYPGIEIVAIQPG-ITRPEALNTAQNILQAHP 207 Query: 207 DVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAV-NDGKLAATIAQLPDQ 264 +V +F D+ AL ++ A+++AG DV V+GFDG + AV + A + Q P + Sbjct: 208 EVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAVKKEESFVAVVCQYPGE 267 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +G G+ETA +V+KGEKV+ + PV L K+ Sbjct: 268 MGRLGLETALRVIKGEKVEKEIPVLPGLFTKE 299 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 108/291 (37%), Positives = 160/291 (54%), Gaps = 13/291 (4%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 V+ A K I VSTLNN FFV LK G +K A + G++LV ++ + +++ + + Sbjct: 59 PVANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAIN 118 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 L +G L++NP DS A+ AV+ AN NIPV TLDR + G+V S +ASDNV G+ A Sbjct: 119 LLSQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGKVTSFVASDNVALGQTA 178 Query: 138 GDYIAKKAGE-----GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 +IA + + V++L G+ GT+AA +R +GF +A + V+A Q FD+ Sbjct: 179 AKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFDQ 238 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-------KSDVMVVGFDGTPD 244 K LN M N+L +P + AVF ND+ +GA +A+ AG K ++V+G DGT Sbjct: 239 EKSLNAMTNILQKYPQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGTAQ 298 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A+ GK ATI+Q P Q+ AK ++ + V A Y L+ K Sbjct: 299 ALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPTLLIDK 349 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 2/278 (0%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL 78 S A K + + + +L N F V L + A+K+A +LG L + D +P ++ V+ + Sbjct: 46 TSKPADKKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETM 105 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 G +++NP D+ A AV A ANIPVI ++ + ++ S++ S +V G++ Sbjct: 106 ISDGVDAIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKLTSYVGSKDVYAGELEM 165 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNV 197 IA K G ++ L G G SA ER EG Q + + VLA + A++ R + + V Sbjct: 166 QAIADKIGGKGNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSEAMTV 225 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAAT 257 M+N L A + AV A+NDEMALGA +A+ A K D+ +G DG D AV G L AT Sbjct: 226 MENWLQAFDKIDAVVAENDEMALGARKAI-EAKKLDIPTIGVDGITDALDAVEKGTLIAT 284 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 I Q G+K +E A KGE V +Y +D + V K Sbjct: 285 IFQDGAGQGSKALEIAVAKAKGENVDKEYWIDFEPVTK 322 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 11/299 (3%) Query: 5 KLATLVSAVALSATVSAN--AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLV 60 + L + + L A + A K I T+N+P+ V++ +G +K A + +L+ Sbjct: 9 RTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLI 68 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 V D N+ +K++A+V+ L +G K+L+I+P A+ VK A A I V+TLDR+ Sbjct: 69 VTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP 128 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 V H+ +N+ G AG+++AKK +IELQG AG SA +R +GF +A+A H Sbjct: 129 -VTVHVGGENLPLGVGAGEFLAKKLNGKGNIIELQGTAGASATIDRNKGFAEAIAKHPDM 187 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAH--PDVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 V+ASQ D+ R K + M++++ +QAV+A NDEMALGA++ L+ AG+ ++V V Sbjct: 188 KVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGRLNEVAV 247 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 VG DG +AV GKLAAT + +G+ETA KV KGE+V + V Sbjct: 248 VGIDGQETAFEAVKQGKLAATFVYP--FVAPEGIETAYKVAKGEEVPETITLPTVSVTP 304 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 152/270 (56%), Gaps = 3/270 (1%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKIL 86 +T+NNPFF ++++ ++ D+ G L+V+D+QN+ K+++ V+DL +G +L Sbjct: 68 YKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQGIDLL 127 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHI-ASDNVLGGKIAGDYIAKKA 145 + P DS ++ ++++ +A +PV+ D ++V+ I SDN G++ + + KK Sbjct: 128 FLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVNTIIVSDNYYAGELVAEDMMKKL 187 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAH 205 EG+KV L A +R GF+ + F +++ D L + +++L + Sbjct: 188 PEGSKVCILT-SPSAEACIKRQNGFKDKADGY-FKIVSEIDGKGDTATSLGIAEDVLQGN 245 Query: 206 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 PD+ A +A ND A+G ++AL++ K+DV+V G DG P G++A+++G + AT AQ P I Sbjct: 246 PDLGAFYAINDPSAIGCVQALESQKKTDVLVYGVDGQPMGKQAISEGTMEATAAQSPINI 305 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + V A K+L GE V+ V L+ K Sbjct: 306 GKESVAAAYKILSGESVEKNILVPTFLIDK 335 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 156/296 (52%), Gaps = 5/296 (1%) Query: 5 KLATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVL 62 KL L+ L + A+ +AKD I + ++ ++ F L+ Q + + G + Sbjct: 2 KLKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQFE 61 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR--QATKG 120 D++ + A+++ +++ +G +++NP D+ V +K+A A IP++ ++R + T Sbjct: 62 DAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVTLP 121 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 ++++ SD+ L GK+ + +AK V+ L G A R+R G ++ A + Sbjct: 122 AGMAYVGSDSKLAGKLQMEELAKLMNGKGNVMILMGELSNEATRDRTRGVEEVAAKYPGI 181 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239 +L Q A + R + +++ + + A+ + NDEMA+GA+ AL+ A KS V+V G Sbjct: 182 KILDKQTAKWGRKEAVDITTDWALTGQQIDAIASNNDEMAIGAILALKQAKKSGVLVAGV 241 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DGTPD + + G LA ++ Q G V+TA +++KGEKV++ + +L+ K Sbjct: 242 DGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEKVESNVLIPYQLITK 297 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 137/281 (48%), Gaps = 6/281 (2%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDS--QNNPAKELANVQD 77 A++ K I L+ + ++++K GA+ +A +LG L + +P +++ ++D Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 + +LI PTD A+ V+ A A IPVI +D + VS +A+DN+ ++A Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAEMA 162 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGL 195 D + + G K+ + G+ R GF+ + ++ +Q + D+ + L Sbjct: 163 ADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRAL 222 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKL 254 N ++LTAHPD+ + N+ +G A++ V VVGFD + A+ + + Sbjct: 223 NQALDILTAHPDLAGFYGTNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYI 282 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A++ Q P +G KGVE A L+G++V + + ++ K Sbjct: 283 QASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVDTGVTVMTK 323 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 169/307 (55%), Gaps = 16/307 (5%) Query: 1 MNMKKLATLVSAVALSATV----------SANAMAKDTIALVVSTLNNPFFVSLKDGAQK 50 M KK +AV L+ ++ ++ +A+V+ TL++P++ ++ GA+ Sbjct: 1 MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKA 60 Query: 51 EADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 +LG ++ V+ ++++ +++ ++D + L+++P+ D V ++ A + Sbjct: 61 AGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---V 117 Query: 109 PVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 168 PV+ +D A S I ++N G G ++ +G KV + G G +A ER + Sbjct: 118 PVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKVAIISGALGNTATDERVK 177 Query: 169 GFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT 228 G + A+ ++A QPAD D+ K ++VM+N+L + DV+ VFA ND+MALG LRA++ Sbjct: 178 GAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGVLRAVEA 237 Query: 229 AGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 G DV V+G DGT + +++ DGKLA TIAQ P ++G +GV+ A + GEKV + Sbjct: 238 KGL-DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINS 296 Query: 289 DLKLVVK 295 ++++ K Sbjct: 297 GVEVITK 303 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 3/275 (1%) Query: 23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRG 82 K T+NNPFF L+ + E +K G L+ +D + +K++ + D+ +G Sbjct: 37 TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQG 96 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYI 141 + + +NP D + V ++ +ANIP+I D + V +++ SDN GK+ GD + Sbjct: 97 VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDMNYVTAYVGSDNKNAGKVCGDDL 156 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNL 201 K+ G K+ L ++ +R GF+ A+ F ++A Q D + + ++ Sbjct: 157 VKRYPNGGKIAILN-CPTMNSINDRIAGFKSAIEGKNFTIVAEQDGKGDLQTSMKLADDI 215 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND-GKLAATIAQ 260 L +H D+ A+ ND ALGAL A ++A +S +++ G DG+PD +K + G+ T AQ Sbjct: 216 LQSHSDIVAIMGGNDPTALGALAACKSAKQSKILIYGVDGSPDAKKEIASGGQFVGTGAQ 275 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P QIG K E KVL + V+ K PV L+ K Sbjct: 276 SPKQIGVKSAELGYKVLNKQNVEKKTPVQTFLINK 310 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 84/299 (28%), Positives = 150/299 (50%), Gaps = 8/299 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLV 60 + + ++ A L S A+A + + V +N + L Q+ A ++ G L Sbjct: 10 LSRTRAVLFATVLCLAGST-ALADLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQ 67 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 V DS ++ ++L V+ + +++NP D+ A G + A +A IP++ L+ + Sbjct: 68 VEDSGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVR 127 Query: 121 EV---VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 E V + +D G++ +Y+A+K G + L G R+R G + +A + Sbjct: 128 EFPAGVVFVGTDERRLGQMQMEYLAEKMGGKGDLAILLGRLAHDDTRKRTAGVKDVLARY 187 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV 236 V+ Q D+ R KGL++ N L++ + AV A NDEM +GA AL+ AG+ +V V Sbjct: 188 PQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFDAVVANNDEMGIGAAMALRQAGRREVSV 247 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G DGTPDG A+ G+LA T+ + P +G + V+ A ++++ + VQ + + L+ Sbjct: 248 GGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQGDVWIPVHLITP 306 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 11/302 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKKLA V A A+ A A A K I + ++ ++ F +L++G + A ++ + Sbjct: 1 MKKLALSVLASAMFAGSVAAADLK--IGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIE 58 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--- 119 D +N +L +Q+ G +++NP D+DA + A A IP+I ++RQ Sbjct: 59 DGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQ 118 Query: 120 -GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH- 177 + + +AS+ + G + + + + G V+ + G AA +R + + Sbjct: 119 LPDNQAFVASNEEVSGTLQTEEVCRLLGGKGNVVVMMGELSNQAAIQRTKDIHDVIKRKE 178 Query: 178 --KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--D 233 V+A Q A++ R+KG ++M N L+A + AV + NDEMA+GA++AL+ +G+ Sbjct: 179 CSGMKVVAEQTAEWSRLKGNDLMTNWLSAGLEFDAVISNNDEMAIGAIQALKASGRKMDS 238 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 V+V G D TPD A+ G L T+ Q GA V+ A ++ KGE V K V +LV Sbjct: 239 VVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKVWVPFELV 298 Query: 294 VK 295 Sbjct: 299 TP 300 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 152/289 (52%), Gaps = 10/289 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELA 73 SA ++ TI V TLNN + ++L +GA+ EA+ G + V D + +L Sbjct: 61 SAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLG 120 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV------VSHIA 127 ++++ +L+ P+ SD + +A+ +A IP+I LD + T + + Sbjct: 121 IIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYG 180 Query: 128 SDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPA 187 ++N G K+AG+Y+AK +G K L+GI G + A +R GF + A V+A Q A Sbjct: 181 TNNYEGAKLAGEYVAKNFEKGTKTAILKGIEGQTNAADRYNGFIEG-AGDTVTVVAEQTA 239 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGE 246 +++ +G QN+++A+PDV+ F ND M +GALRA++ A + ++GFD + Sbjct: 240 NWEVDQGYTAAQNIISANPDVELFFCCNDNMGIGALRAIKEANMQEQIQIIGFDAVSEAL 299 Query: 247 KAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V +G+ AT+AQ P ++G GV+ K+ G + ++ +++ K Sbjct: 300 NLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEAESYIDTGTEVITK 348 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 88/311 (28%), Positives = 149/311 (47%), Gaps = 17/311 (5%) Query: 3 MKKLATLVSAVAL-------------SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQ 49 MKKL + A A SAN+ K I LV + F+ S++ GA+ Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 50 KEADKLGYNLVVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAN 107 K ++LG + + + K++ V++ + L I D DA+ K A A Sbjct: 61 KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120 Query: 108 IPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG 167 IPV+T D S IA+DN + G +AG+ +AK KV + GT+ A ER Sbjct: 121 IPVVTFDSNVKGDITSSFIATDNKVAGAMAGEQLAKLINGKGKVAIVSHNPGTTTAIERE 180 Query: 168 EGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 226 GF++A+A + +L +Q +D D+ K L + +++ A+PD+ ++ N+ G + + Sbjct: 181 AGFREALAKYPDIKILNTQFSDGDKSKALAITLDIINANPDIAGIYGTNEPSIFGIAKGV 240 Query: 227 QTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 + G + V++VG D + D K + G ++ + Q P +G + V+ K+ KGEKV+ + Sbjct: 241 EEKGLTGKVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYKLSKGEKVEKR 300 Query: 286 YPVDLKLVVKQ 296 LV K+ Sbjct: 301 IDTGAILVTKE 311 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 146/286 (51%), Gaps = 2/286 (0%) Query: 12 AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVLDSQNNPA 69 A A + S+ +IA + +L+ PF+ +K G + +A G + V DS++N Sbjct: 39 ASAEKSGASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNAN 98 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASD 129 +LANVQD ++I+PTDS + + A +A IPV+ D GE VS I++D Sbjct: 99 TQLANVQDAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDIGTDSGEYVSFISTD 158 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADF 189 N G K G+Y+A K +G ++ ++ R EGF++ + V Q Sbjct: 159 NSGGAKKLGEYVADKLNKGDEIAQIALNQARKNGVLRKEGFEEGIKEKLKEVDFRQMEKV 218 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV 249 +R +G+ Q+L+T++P+++ +F +++ ++GA+ AL+ +VGFD +P+ +A+ Sbjct: 219 NRDEGVRYTQDLITSYPNLKCIFCHSEDPSMGAVTALKEINNDKCKIVGFDCSPEVVEAI 278 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + AT AQ P +G V+ L G + + VD LV + Sbjct: 279 KSGDILATAAQQPVFMGRTAVDCLKTHLDGGTPEKEISVDTLLVTQ 324 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 153/299 (51%), Gaps = 5/299 (1%) Query: 1 MNMKK--LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 MN ++ L ++ + + A S A K TI V L PFFV + + + EA G N Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVN 80 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L D QN+ K+ A+++ V+ ++I+P D +A+ A++ A +A +PV+T+DR+ Sbjct: 81 LTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVD 140 Query: 119 KGE-VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA-- 175 + +++H+ +DNV GG+ + GAK+ LQG G A +R +G + Sbjct: 141 GVQGILAHVGADNVKGGEAEASAMVAAFPNGAKLFHLQGQPGAGPAIDRNKGVHNVLDPL 200 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 K+ ++ Q A+F R + L+V + L A+ A+ ND+MALGAL A +DV Sbjct: 201 KDKYQIIFEQTANFARAEALSVTEAGLAANGKPDAIICANDDMALGALEACAARNFTDVK 260 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + GFD P+ AV DGKLA T+ Q P Q V+ A K + + V L +V Sbjct: 261 IYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTEPKEKLVLLTPIV 319 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 96/318 (30%), Positives = 162/318 (50%), Gaps = 25/318 (7%) Query: 3 MKKLATLVSAVALSATVSAN----------------AMAKDTIALVVSTLNNPFFVSLKD 46 MK + A L+ N + +K TI + + TL+NPFF + D Sbjct: 1 MKHRLFIALACLLTVFAGCNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGD 60 Query: 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 E K GY+ VV+ + AK+ ++D V+ ++++P DS ++ ++ AN A Sbjct: 61 NIVSEGKKRGYDAVVVSGDKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAA 120 Query: 107 NIPVITLDRQ--ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAAR 164 IPV T+D ++ + IA+DN GGK A + + GE I + + + Sbjct: 121 GIPVFTVDIPCHEPGVKIATQIATDNYGGGKEAAKAMIEALGEAGGKIAILHFKQAESCQ 180 Query: 165 ERGEGFQQAVAAH------KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEM 218 R +GF++ + AH K +++A + + +G ++ L A+PD+ +FA ND Sbjct: 181 LRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHGIFAINDPA 240 Query: 219 ALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 ALGA AL+ AGK+D V++VGFDG P+G++A+ +GK+ A Q PD++GA+ V+ + Sbjct: 241 ALGARAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIYADPIQFPDKMGAQIVDAIIQQS 300 Query: 278 KGEKVQAKYPVDLKLVVK 295 KGE + + + L K Sbjct: 301 KGETLPPQMLIPTSLYKK 318 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 152/274 (55%), Gaps = 6/274 (2%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKIL 86 TI V + F + +G +K+A++LG +LV+LD+Q + ++ +++L + ++ Sbjct: 45 YTIGCTVYYMT-EFVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLIAQKVDVI 103 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 ++ DSDA+ A++M + A IP++ ++ E ++ D+VL G++ + G Sbjct: 104 IVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYHYVGPDDVLAGELEMQNAIDEIG 163 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLLTA 204 V+ L+G G SA +R EG Q + + K NVLA Q A++ R + L +++N L Sbjct: 164 GEGNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTANWSREEALTLVENWLET 223 Query: 205 H-PDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 + A+ A NDEMALGA++AL+ AG +D ++V G D DG AV DG L T+ Q Sbjct: 224 FSGKIDAIVAHNDEMALGAIQALEAAGLTDKIVVTGVDAILDGCNAVKDGTLLGTVYQDA 283 Query: 263 DQIGAKGVETADKVLKGEKVQAKY-PVDLKLVVK 295 G++ V+ A VL+G+ + + +D+K + K Sbjct: 284 GLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITK 317 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 137/281 (48%), Gaps = 4/281 (1%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKELANVQDL 78 K + + ++ ++ F + DG +K A+K G L +D++ + AK++ V++ Sbjct: 32 GGQGGKKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEFVDAKEDIAKQMNQVENF 91 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIA 137 +G ++++ P D+ A A ++ ++R + ++ S+ G + Sbjct: 92 VTQGKDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLPDGAYYVGSEEKKAGIMQ 151 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 +Y+A+K G ++ L G +R EG ++ + +L Q + R G+ Sbjct: 152 MEYLAEKMGGKGNIVILMGKLDNEGTIKRTEGVEEIAKKYPDIKILDKQTGLWQRTDGMA 211 Query: 197 VMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 +N L + + + A+ + ND+MALGA++AL+ +GK+ + V+G D TPDG A+ G ++ Sbjct: 212 KTENWLNKYGNEINAIVSNNDDMALGAVQALKDSGKTGIFVIGVDATPDGLAALAAGDIS 271 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 AT+ Q D G VE A K GE V + V KLV + Sbjct: 272 ATVFQDADGQGGGAVEVAKKAANGETVVKETWVPFKLVTPE 312 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 16/310 (5%) Query: 1 MNMKKLATLVSAVALSATVSANAMA--------------KDTIALVVSTLNNPFFVSLKD 46 M + +V A ++AT+ A A + TI L V+ L FF +K Sbjct: 1 MKARATTRIVIATGVAATMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQ 60 Query: 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 EA K G ++V D++ + A ++ +QD R ++ P + A G VK AN+A Sbjct: 61 SVTAEAKKKGIKVIVSDARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRA 120 Query: 107 NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 IPV+T+DR S IASD+V + G+Y+ K++G ++ LQG GT+ +R Sbjct: 121 KIPVVTVDRNPPGEPGKSFIASDSVAAARTLGNYVVKESGGKGQLAILQGQIGTTPQVDR 180 Query: 167 GEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRA 225 +GF QA+ A V++ QPAD+ + K +V Q++L AHP + ++ Q D MALGA +A Sbjct: 181 QKGFGQALKNAPGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDILWGQADAMALGAAQA 240 Query: 226 LQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA 284 ++ +G K ++VGFDG G KAV G + AT+ Q ++G V TA ++KG+KV A Sbjct: 241 VKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVPA 300 Query: 285 KYPVDLKLVV 294 + L+ Sbjct: 301 QQLQPAFLLT 310 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 169/307 (55%), Gaps = 11/307 (3%) Query: 1 MNMKKLATLVSAVALSATV-------SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD 53 M K+LA + +V LSA V SA+ K IAL+V + ++ +++S+K GA+K A Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 54 KLGYNLVVLD--SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 + G N++ ++ + E+ V+D + +++ +D+ A+ V+ A A IP++ Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 T+D +V S IA+DN A D A+ G+ KV + + G S A +R +GF+ Sbjct: 121 TVDSGVDSDKVASFIATDNEKAASQAADVCAELIGKSGKVGVVNFVPGVSTAVQREKGFR 180 Query: 172 QAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 ++ H +L +Q + D+ K + + +++LTA+PDV+A+FA N+ ALG +AL+ G Sbjct: 181 DGMSKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVKAIFAANNRSALGVAQALKGKG 240 Query: 231 -KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 V VV FD PD K + DG + A I Q P ++G +GV+ ++KGE V+ + Sbjct: 241 VAGKVKVVAFDADPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGETVEKRIDTG 300 Query: 290 LKLVVKQ 296 + +V K+ Sbjct: 301 VTIVTKE 307 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 100/288 (34%), Positives = 155/288 (53%), Gaps = 12/288 (4%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 S + +++K T+ + + T NPFF + D + E K GY++ V+ + + A++ V Sbjct: 40 SGESTKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQV 99 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ--ATKGEVVSHIASDNVLG 133 +D V G +++ P DS +G A++ A A IPV T D A EVVSHIA+DN+ G Sbjct: 100 KDFIVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAPGAEVVSHIATDNLGG 159 Query: 134 GKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-------FNVLASQ 185 GK A + + + G G KV+ L A S R +GF++ + H +++ Sbjct: 160 GKQAAEAMIEAVGSAGGKVVILDFKAAES-CILRVQGFKEVIDKHNSENPSSAITIVSEL 218 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPD 244 P D + K ++ L AHPD+ +FA ND ALGA AL+ A K+D V +VGFDG PD Sbjct: 219 PGDGQKDKSYKAAEDALQAHPDLAGIFAINDPSALGARAALEKANKADQVKIVGFDGQPD 278 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 G +A+++GK+ A Q PDQIG + + +GE+V + + L Sbjct: 279 GMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKEQLIPTGL 326 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 147/291 (50%), Gaps = 11/291 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL----GYNLVVLDSQNNPAKE 71 + VS K I LV+ +L+N FF ++ GA++ A + + ++ + + A + Sbjct: 42 ATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTATGINDERDFATQ 101 Query: 72 LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK------GEVVSH 125 +A+ + L ++++ P DS A+ V A +A I VI +D + G ++ Sbjct: 102 IASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEATKKAAGIDLAF 161 Query: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ 185 DN G K++G+ +AK G G KV L+G A +R GF A+A N++ ++ Sbjct: 162 FGPDNRAGAKMSGEVLAKALGAGGKVAVLEGNPEADNAVQRRLGFDDAIADGSLNLVVAE 221 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPD 244 ++ +G ++ L +PD+Q + ND MA GA++AL+ A + VVGFD P Sbjct: 222 SGHWETSEGQSITAAWLKKYPDLQGIMCANDSMAFGAVQALEAANLLDKIKVVGFDNIPA 281 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + + DGK+ AT+ Q Q+ A G++ + LKGEK +LKL+ K Sbjct: 282 VQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSGWIRTELKLITK 332 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 98/311 (31%), Positives = 165/311 (53%), Gaps = 19/311 (6%) Query: 3 MKKLATLVSAVALSATVSANAMA--------------KDTIALVVSTLNNPFFVSLKDGA 48 MKK+ ++ + + + A TI + + T +PF++SLKD Sbjct: 1 MKKILLVLVTMLFIFSCGSKDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYLSLKDAI 60 Query: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 +KEA L V + + K++++++D + ++I+P DS V AVK A ANI Sbjct: 61 EKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVKKAEAANI 120 Query: 109 PVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 168 PVIT+D A +V +H+A+DN GGKIAG+ +A+ +V ++ + +R E Sbjct: 121 PVITVDVPAIGVDVAAHVATDNYTGGKIAGEEMARLLNGKGEVAVIE-YPTVDSVVQRIE 179 Query: 169 GFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 GF++ +A + ++A Q A R + L QN++ A+ ++ +F D+ AL A+ A++ Sbjct: 180 GFKEVIAKYPDIKIVAIQ-AGITRPEALTAAQNMIQANKNLGGIFGFGDDAALAAVAAVK 238 Query: 228 TAGKSD-VMVVGFDGTPDGEKAV-NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 +AGK D + V+GFDG + AV + AA I Q P+ +G V+T K+LKGE+V+ Sbjct: 239 SAGKEDQIKVIGFDGMQEARDAVTKEKSFAAVITQYPEDMGKIAVDTTLKILKGEQVEKN 298 Query: 286 YPVDLKLVVKQ 296 PV + K+ Sbjct: 299 IPVTPGIFTKE 309 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 153/306 (50%), Gaps = 13/306 (4%) Query: 3 MKKLATLVSAVALSATVSANAM---------AKDTIALVVSTLNNPFFVSLKDGAQKEAD 53 MKK + ++ A + + K I L + ++ F + + + EA Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 54 KL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 L +LVV++++ +PA++ + + +L + +L+ P D+ + ++AN + IP+I+ Sbjct: 61 NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120 Query: 113 LDRQA-TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 ++ + + +++ SD++ G + +Y K+ V+ L+G A +R EGF+ Sbjct: 121 VNNFLKNQDDAAAYVGSDSITSGIMEAEYAVKQLNGKGNVVILKGEPNHETAIKRTEGFK 180 Query: 172 QAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 Q + + ++ Q D+ R G+ + +N + A+ A NDEMA+GA+ AL+ Sbjct: 181 QVLQNYPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILANNDEMAIGAIMALKENN 240 Query: 231 K-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 ++V V G D TPD K + +G L T+ Q G++ ++ A K++KGEK+ K V Sbjct: 241 LINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYKLVKGEKINKKIFVP 300 Query: 290 LKLVVK 295 +LVV Sbjct: 301 YELVVP 306 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 152/299 (50%), Gaps = 9/299 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK L +V AL + S A +TI + ++ + F ++ KEA G ++ Sbjct: 1 MKYLKRIVLVAALGCSTSVLA---ETIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFE 57 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 D++ + ++ VQ+ G ++++P +S KM +A IP++ ++R ++ Sbjct: 58 DARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKL 117 Query: 123 ---VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-K 178 V + SD G + + +A+ A V + G + A +R + +Q VA + K Sbjct: 118 PAGVVFVGSDEKQSGTLQMEELARLANYQGNVAVMIGNLTDAGALQRTKDVEQVVAKYPK 177 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--SDVMV 236 V+ Q A++ R +G+++M N +T + V A NDEMA+GA+ ALQ AGK S V+V Sbjct: 178 MKVVQKQSANYSRSEGMDLMLNWITNGESIDIVAANNDEMAIGAIMALQQAGKQGSKVLV 237 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G D TPDG KA++ GK+ T+ Q G V+ A +++KGEK+ Y + +LV Sbjct: 238 GGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLDPYYWIPFELVTP 296 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 94/311 (30%), Positives = 169/311 (54%), Gaps = 18/311 (5%) Query: 1 MNMKKLATLVSA-----VALSATVSANAM---AKDTIALVVSTLNNPFFVSLKDGAQKEA 52 MN K ++ L++A V + TV+ +A K I + L P+ V++ D A Sbjct: 1 MNKKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAA 60 Query: 53 DKL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 +K + ++ D+ + +K++A++++ G +++ +P ++ + NAV A A IPVI Sbjct: 61 EKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVI 120 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAK-KAGEGAKVIELQGIAGTSAARERGEGF 170 LDR+ + I +DNV G+IAG+YIA +G KV E++G+ GTS +R GF Sbjct: 121 LLDRKIDGDKYTQFIGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGIDRDNGF 180 Query: 171 QQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 ++ + + K ++A AD+ R K + V + +L + ++ A ND MA GA A + A Sbjct: 181 REGIKKNDKIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFLALNDPMAEGAYIAAKNA 240 Query: 230 GKS-DVMVVGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL-KGEKVQA 284 G+ D++ VGFDG P G ++V DG+L+ T Q+ G + +E+A ++L +G+++ Sbjct: 241 GREGDILFVGFDGLPTPDGGIRSVMDGRLSMT--QVYPTGGTEAIESAYQLLVEGKELDK 298 Query: 285 KYPVDLKLVVK 295 + ++V Sbjct: 299 TLTLTSEIVTP 309 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 176/328 (53%), Gaps = 34/328 (10%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDT-----------------IALVVSTLNNPFFVSL 44 N+ K+ L++ L + A AK IA+V+ TL+NPF+V + Sbjct: 3 NIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWVEM 62 Query: 45 KDGAQKEADKLGYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM 102 K+G +KEA G + + S+ + ++L +++L +G K + I P A+ Sbjct: 63 KEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAIVE 122 Query: 103 ANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQ 155 AN+ I V+ +D + G V++ + +DNV G +YI K EG +V ++ Sbjct: 123 ANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKLPEGGEVAIIE 182 Query: 156 GIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 214 G +G ++ R +G +A A KF ++ASQPAD+DR K L+V NL+ +P+++A++A Sbjct: 183 GKSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDVAANLIQKYPNLKAIYAC 242 Query: 215 NDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETA 273 ND MALGA++A+ AGK+ ++VVG DG P+ ++++GKL AT+AQ P IGA ++ Sbjct: 243 NDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGKLNATVAQDPAMIGATSLKIL 302 Query: 274 DKVLKGEK------VQAKYPVDLKLVVK 295 + +K + + PV+ L+ K Sbjct: 303 IEAIKDKPQISPDIEAKEVPVESNLISK 330 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 2/269 (0%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL 78 + A + D IA++ +NPFF + GA+ +A +LGY +++ ++ K+ + Sbjct: 20 TALPAFSADLIAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTA 79 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIA 137 RG K ++++ +DA AVK A A IP +DR+ G V+ I S+N G ++ Sbjct: 80 IGRGAKAIILDNAGADASVAAVKKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLG 139 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 K GE +EL G + A R +G+ + + +A Q A++ + + + Sbjct: 140 AQEFVKLMGEKGNYVELVGKESDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYS 199 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAA 256 M+ +L A+PD++ V + ND MA+GA+ ALQ AG+ DV+VVGFDG+ D ++ G + A Sbjct: 200 KMETILQANPDIKGVISGNDTMAMGAIAALQAAGRKDVIVVGFDGSNDVRDSIKSGGIKA 259 Query: 257 TIAQLPDQIGAKGVETADKVLKGEKVQAK 285 T+ Q VE AD +K + + Sbjct: 260 TVLQPAYAQAQLAVEQADAYIKNKTTPKE 288 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 105/277 (37%), Positives = 150/277 (54%), Gaps = 5/277 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 A I TL +PF+V LK+GA+ A G L+ LD+ + K+ ++QDL R Sbjct: 31 AAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQDLLTRKV 90 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 +L+INP + DAV A+ A + +PVIT+DR G V +H+ DNV GK GD + Sbjct: 91 DVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGGVTAHLGRDNVKMGKAVGDAVLA 150 Query: 144 KAGEG----AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQ 199 + + KVIE+QG AG + R +GF A+ F ++A A++ R + MQ Sbjct: 151 ELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKGSGFKIVAGPYAEYTRANAVTAMQ 210 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDG-KLAATI 258 +LL AHPDV+ V+A ND+MA+GAL+ L AGK DV V G DG + ++ G + AT Sbjct: 211 DLLQAHPDVKVVYAHNDDMAMGALKVLAEAGKKDVFVAGVDGLSEALASMAGGDQYVATA 270 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P +G V+TA + G+KV A K V K Sbjct: 271 LNDPRYLGDMTVQTARAIKAGKKVPAFVDAGTKAVTK 307 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 139/279 (49%), Gaps = 4/279 (1%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDL 78 + A + I + L+ F L+ + + L++ D+++ K+ + + Sbjct: 39 TEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSF 98 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 +G ++I+P D+DA+ +AVK A IPVIT T + + S N GG+I Sbjct: 99 VAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVWVGSSNENGGEIEM 158 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNV 197 Y+A+K G K+ L+G G A + R G++ + + ++ Q ++ R + + + Sbjct: 159 KYVAEKLGGKGKIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFDQTGNWQREEAMAL 218 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAA 256 ++NLLTA ++ A+ QND MALGAL A++ AGK D + + G D D ++ G+L A Sbjct: 219 IENLLTAGTELDAIVCQNDGMALGALEAVKAAGKKDQITITGIDAIVDALDSIKAGELDA 278 Query: 257 TIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 T Q G ++ A K +GE V+ + + +LV K Sbjct: 279 TCFQDAIGQGTNALDMAVKAARGETVE-RMDIPFELVTK 316 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRG 82 +K TI TLNN + + + + Q+ + LG + + ++L +++ +G Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK------GEVVSHIASDNVLGGKI 136 +++ P S+ + +A++ ANIPVI LD + G+ + +DN +GG++ Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 196 G+ +A+ +G K L+G+ G + +R GF A +++A Q A+++ +G Sbjct: 199 VGEEVAQMYPDGCKTAILRGVQGQTNDDDRYNGFLDK-AGDVVDLVAEQHANWETDQGYT 257 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLA 255 +QN++ A+ D+Q ++ +ND M +GA +A+ AG +D + + +DG +G + V DGK Sbjct: 258 AIQNIIQANKDLQVIYCENDLMGIGAYQAVDEAGLTDQIKIFSYDGVTEGLQYVVDGKFV 317 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +T AQ P ++G GV K+ G+ ++ +L+ + Sbjct: 318 STCAQQPIKMGKLGVANMAKIFAGKDAESYIDTGCELITSE 358 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 155/300 (51%), Gaps = 8/300 (2%) Query: 3 MKKLATLVSAVALSATVSANA---MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 MKK L S +A + A+ + IA++ + +NPFF + +GA +A +LGY+ Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDT 60 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 +V + K+ ++ R K ++++ D+DA +++ +A IP DR+ K Sbjct: 61 LVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREINK 120 Query: 120 -GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 G V+ I S+N G ++AG+ A+ G+G + +EL G + A+ R EGF + Sbjct: 121 TGIAVTQIVSNNFQGAQLAGEKFAELMGDGGEYVELLGPESDTNAQVRSEGFHDILDNFP 180 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 F ++A Q A++ + + + M+++L A+P+++ V ND MALGA ALQ AG+ DV +V Sbjct: 181 EFKMVARQSANWSQTEAFSRMESILQANPNIKGVITGNDSMALGAEAALQAAGRKDVFIV 240 Query: 238 GFDGTPDGEKAVNDG-KLAATIAQLPDQIGAKGVETADKVLKGEK--VQAKYPVDLKLVV 294 GFDG ++ G + ATI Q + E AD ++ + K +D L+ Sbjct: 241 GFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTGLPEKQLMDCVLID 300 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 162/294 (55%), Gaps = 5/294 (1%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 N+K+ + A+A SA+ + A + + + T ++PF+++L +G ++ A NL V Sbjct: 3 NLKRFTAIAVALA-SASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKV 61 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 + + AK++ +++D + ++I+P DS + +K A +ANIPVIT+D A + Sbjct: 62 SVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENSK 121 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV 181 +VSHIA+DN GG +AG K+ G +V+ L G S+ R +GF+ AVA + Sbjct: 122 IVSHIATDNYGGGVVAGKLAVKQLGGKGQVVMLS-YPGISSVEARLQGFRDAVADTDIKI 180 Query: 182 LASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDG 241 +A QP R + + N+L A+PD +FA D+M +GA A+ KS +V+GFDG Sbjct: 181 VAVQPGK-TREESMTSTINMLQANPDTDLIFAFGDDMMIGAGLAVTKQ-KSKAVVIGFDG 238 Query: 242 TPDGEKAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P+G KAV++ + + Q D +G ++ L G++V+++YP+ L Sbjct: 239 MPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPIVPVLYT 292 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 11/305 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKD----------TIALVVSTLNNPFFVSLKDGAQK 50 M + L L+ + +TV K TI T ++ F ++ D A+ Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 A + G +L++ D++ + K++ + + L + L++ P D + V MAN+A+IP+ Sbjct: 61 AAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120 Query: 111 ITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGF 170 I + + + + G+I G + G+++ ++G G S R GF Sbjct: 121 IICNGDIADKNYTAFVGCTDQESGEILGTWFNDNVEHGSQICIIEGPMGQSGQVGRYAGF 180 Query: 171 QQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTA 229 ++ F VL+ Q A++ R + + + ++ LT + D ++A+ +ND+MA+GAL A + A Sbjct: 181 EEVGMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGDKLKAIVCENDDMAMGALSACKAA 240 Query: 230 GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 G++DV++ G DG D +AV DG+L ++ Q G VE A +++ GE Q + Sbjct: 241 GRTDVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAVEVALQIINGEDYQKDTRIP 300 Query: 290 LKLVV 294 + Sbjct: 301 FHAIT 305 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 144/274 (52%), Gaps = 6/274 (2%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 + I + + T + F+ ++ Q++A + +++D+ + K+LA VQD + Sbjct: 51 SGEKVIGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQKV 110 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 +++ PT S + AV +A +A IPV T+D +A +G+V SH+A+DN GGK+A Y A+ Sbjct: 111 DAIVLAPTASAGIAPAVDLAKKAGIPVFTIDIKA-EGDVKSHVATDNYAGGKLAAKYAAE 169 Query: 144 K-AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNL 201 K KV + + + +R +GF+ A+A + V+ + K N+ Q++ Sbjct: 170 KVLNGKGKVAIIT-YSEVQSCVDREKGFKDALAEYPNIKVVDVENCSGSAEKAANLTQDI 228 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND-GKLAATIAQ 260 L PD+ +FA D A+GA+ ++ AG+ +V V+GFDG P+ + + + G A + Q Sbjct: 229 LLKFPDLDLIFAVGDPFAVGAVSTIKAAGR-NVKVIGFDGNPEAIQEIKNHGLWVADVVQ 287 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 PDQIG K ++ G+ V + + +V Sbjct: 288 HPDQIGGKVIDLIADYFNGKSVPPQVLIPPTIVD 321 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 92/276 (33%), Positives = 164/276 (59%), Gaps = 9/276 (3%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKIL 86 I + ++ + + EA+K G+ L+V D+Q+N AK++++V+DL + +L Sbjct: 89 YLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNIDLL 148 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKG---EVVSHIASDNVLGGKIAGDYIAK 143 +++P + + + A++ A + ++PVI +DR A + V++IA+D V G+ AG+++ Sbjct: 149 ILSPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVTYIATDFVWEGQAAGEWLKD 208 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLL 202 K G +IEL G G+S+A++R GF V + ++ASQ +F+R +G VM+NLL Sbjct: 209 KTGGTCNIIELTGTVGSSSAQDRATGFAGVVDQNEGMKIIASQTGNFERSEGQKVMENLL 268 Query: 203 TAH-PDVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATI 258 AH +V AVF ND+MALGA++A++ AG D++V+G DG D K+V G+++AT+ Sbjct: 269 QAHGGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKSVIAGEMSATV 328 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P G +T +K+L G++V + ++ +V Sbjct: 329 VSSP-MYGPITFDTVEKILAGQEVPEQTIMEGVVVD 363 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 150/304 (49%), Gaps = 14/304 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MKK + L T A +T+ + ++ ++ F L++G + +L G L V Sbjct: 1 MKKFIIGAAMSVLLGT----AAHAETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQV 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-- 119 D+QN+ AK+ + +Q+ +++NP D+DA K+A A IP++ ++RQ Sbjct: 57 EDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVD 116 Query: 120 --GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + +ASD + G + + + G + + G AAR R + + + Sbjct: 117 SLPDGQAFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLKTD 176 Query: 178 ---KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--S 232 +V+ Q A++ R +G +++ N L++ + AV A NDEMA+GA++AL+ AGK Sbjct: 177 ECKGISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKDMK 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 +V G D T D A+ G L T+ Q G ++ A K++KG+K++ K + +L Sbjct: 237 SYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPFQL 296 Query: 293 VVKQ 296 V + Sbjct: 297 VTPE 300 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 145/299 (48%), Gaps = 11/299 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEA-DKLGYNLVV 61 MK + L + L+A + I + + ++ + + D +EA G ++ + Sbjct: 8 MKWITVLFCLLGLAACR--QDAPRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVSVEI 64 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 + ++ K+ +V +G +L+I+ ++ + V+ A Q IPVI +DR+ + Sbjct: 65 RSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSDK 124 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FN 180 ++I +DN G+ G+YIA V+EL G+ G++ A ER +GF A++ + Sbjct: 125 YTAYIGADNYEIGRAVGNYIASSLKGKGNVVELTGLGGSTPAMERHQGFMAAISNYPDIK 184 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGF 239 ++ A ++R M ++L HP + AV+A ND +A GA +A + AG+ M+ VG Sbjct: 185 LIDKADAAWEREPAEVEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKKAGREKEMIFVGI 244 Query: 240 DGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 D P +G + V D L AT + G K ++ A +L+ + + ++ +V + Sbjct: 245 DALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQLAMNILEKKSYPRETVMNTAVVDR 301 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 148/299 (49%), Gaps = 7/299 (2%) Query: 3 MKKLATLVSAVALSATV----SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GY 57 MK ++ L A A+S SA A K + + F ++ K+ + + Sbjct: 1 MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAV 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + D+ N+ +K+L + + + +++ P D + V+ ANQA IPVI L Q+ Sbjct: 61 EVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQS 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 G+ + S N+ G++ G+Y+ + +GAK++ L+G G S +ER +GF+ A+ Sbjct: 121 AGGKYT-FVGSKNIDAGRLQGEYMKEHLPKGAKILYLEGTPGLSHTQERKKGFEDALGRS 179 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 LAS A++DR +G+ V ++ + + P A+ A ND+MALGAL ALQ A + VM+ Sbjct: 180 DVTTLASLSANYDRAEGMKVTEDWIQSFPKFDAIVAANDQMALGALEALQGADRLKGVMI 239 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G DGT D A+ G ++ TI Q E + + KGE A+ V + K Sbjct: 240 SGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAEKLVPFASITK 298 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 8/294 (2%) Query: 11 SAVALSATVSANAMAK-DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPA 69 + A SA AN K IA+++ + + F V+L G + +A +LG + VLD++ + + Sbjct: 21 TGCAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKGDSS 80 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASD 129 +++ +QD +G ++++P +S + V+M + A V T+D + +A D Sbjct: 81 TQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAAVAFD 140 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADF 189 N GK+ + +AK GE V+E QG G A RG+GF + + + A + Sbjct: 141 NEKAGKLGAEALAKLMGEKGTVLEYQGAKGAYHAILRGKGFNDGIKQFPGIKVIGRDAQW 200 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-------DVMVVGFDGT 242 L++ + TA + +F+ NDEM G + L K + +VG DGT Sbjct: 201 TADNALSLTVDNFTADSSINGLFSHNDEMVRGIVSGLSQINKDAPVGAANHIPLVGVDGT 260 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 P + +G AT+ Q P ++GA ++ +L G++V D KL+ K+ Sbjct: 261 PLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPKMQLTDTKLITKE 314 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 152/316 (48%), Gaps = 22/316 (6%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDT----------------IALVVSTLNNPFFVSL 44 M K + ++ +S ++A +T I + +S L+ F + Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLD-EFLTYM 59 Query: 45 KDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 103 +D ++EA + + D+QN+ +++A V++ R +++NP D+ + + V M Sbjct: 60 QDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMV 119 Query: 104 NQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSA 162 N A IP+I +R + + + S+++ G + + +AK + + G G A Sbjct: 120 NDAGIPIIIANRTFDGVDQATAFVGSESIQSGLLQMEEVAKLLNNEGNIAIMDGELGHEA 179 Query: 163 ARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 R EG +Q + H V+ A FDR +G+ +M+N L + ++ AV A NDEMALG Sbjct: 180 QIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVANNDEMALG 239 Query: 222 ALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE 280 A+ AL+ GK DV+V G D TP +A+ +GKL T+ Q GA V+ A + GE Sbjct: 240 AILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQGATSVKVAVQAANGE 299 Query: 281 KVQAKYPVDLKLVVKQ 296 V+ + +LV + Sbjct: 300 DVEDA-MIPYELVTPE 314 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 147/285 (51%), Gaps = 10/285 (3%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLT 79 A IALV+ TL NPFF+ ++ GA++ +LG +L+V + + + +++ ++DL Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLI 103 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-------VVSHIASDNVL 132 ++I P DS + +K A +A I +I +D + V I+ DN Sbjct: 104 RMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEK 163 Query: 133 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 + +IA++ + A+ L+GI +R+R G ++A + ++A + A++ Sbjct: 164 AAYESAGFIAREIHKPAQAAILEGIRSADNSRQRRVGAERAFRENPLIRLVARESANWKI 223 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 +G +V + L + HPD+ +F ND MALGA++ LQ +G+ V V +D + ++A+ Sbjct: 224 DEGRDVTRRLFSDHPDITLLFCANDMMALGAIQFLQESGRYGVKVAAYDALEEAKRAILS 283 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G++ T+ Q + G +G+ A +VL GE V V+ LV + Sbjct: 284 GRMEVTVNQQAAEQGYQGIILASRVLNGEAVPEVVLVETSLVTLE 328 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 152/303 (50%), Gaps = 14/303 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MKK ++A L +T A +TI ++ ++ F L++G + A L G +L + Sbjct: 1 MKKFIIGIAAAVLVST----AAHAETIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQI 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-- 119 D+ N+ AK+ + +Q+ G +++ P D+DA K+A A IP++ ++R+ Sbjct: 57 EDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNID 116 Query: 120 --GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 E + +AS+ V G + I K K + + G AAR R + +A Sbjct: 117 TLPEKQAFVASNEVDSGTLQTREICKLLDGKGKAVVIMGELSNQAARMRTKDIHDVLATD 176 Query: 178 ---KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-- 232 ++ Q A++ R +G ++M N L+A + AV A NDEMA+GA++AL+ AG+S Sbjct: 177 QCKGIEIVQEQTANWQRTQGADLMTNWLSAGIEFDAVIANNDEMAIGAIQALKAAGRSMD 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 V++ G D T D A+ G+L ++ Q G ++ A K+ KGE V+ K + +L Sbjct: 237 SVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEAVERKIYIPFEL 296 Query: 293 VVK 295 V K Sbjct: 297 VTK 299 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 140/277 (50%), Gaps = 10/277 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLG---YNLVVLDSQNNPAKELANVQDLTVRGTK 84 ++ + + L+NPFFV + GA+KEA K+G + V+ S + ++ +++ T Sbjct: 61 SVGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTD 120 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 +++IN DS + AV A QA VI +D + ++ + + ++NV G+I+ YIA + Sbjct: 121 LIIINAADSKGIRPAVDQARQAGKVVIAVDTAI-EADIDATVTTNNVQAGEISCQYIADR 179 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLAS-QPADFDRIKGLNVMQNLL 202 V+ + G ++ +R +G + +A + +L+ Q A+ R GL VM +LL Sbjct: 180 LKGKGNVVIVNGPP-VTSVIQRVDGCLKVLAKYPDIKLLSKDQNAEGSRDGGLRVMSDLL 238 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK--LAATIAQ 260 P + AVFA ND +G A A + D +VG DG P+ +A+ G AAT Q Sbjct: 239 VTFPKIDAVFAINDPSGVGVDLAANQAKRQDFFIVGVDGAPEAIEAIASGDSLYAATATQ 298 Query: 261 LPDQIGAKGVETADKVLKGEKVQ-AKYPVDLKLVVKQ 296 P + ++ + +L G+K + + KL+ K+ Sbjct: 299 NPRGMTQTAIQVGNDILHGKKPESPNILIPAKLITKE 335 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 142/308 (46%), Gaps = 17/308 (5%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGA---QKEADKLG-- 56 N+ A +S++ LS A TIA++ + ++ + GA Q+E + G Sbjct: 7 NLLTCALFLSSICLSCA----ADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIK 62 Query: 57 YNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD 114 +L+ +++ +++ V++ R +++ P D+ A+ V A +A IPV+ D Sbjct: 63 VDLIWKGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFD 122 Query: 115 RQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV 174 + VS +A+DN GG++A + + + VI L+ G+++ ER GF + Sbjct: 123 SALKTDKYVSFVATDNYKGGQLAAERMGQLLEGKGNVILLRYAVGSASTEEREAGFMDTL 182 Query: 175 AA--HKFNVLAS-QPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAG 230 + V++S Q A R QNLL +V +F + + +AL+ G Sbjct: 183 KSKFPNIKVISSDQHAGATRETAYQASQNLLNRFGHEVNGIFCPCEPPTVAMAKALRDIG 242 Query: 231 K--SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 K V +VGFD + +G + + Q P ++G GV T + L+GEKV+ + Sbjct: 243 KAGGKVKMVGFDAGSQSVIDLKNGDVQGLVVQNPLRMGYLGVITMVQHLQGEKVEKRIDT 302 Query: 289 DLKLVVKQ 296 +++V + Sbjct: 303 GVQIVTPE 310 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 164/306 (53%), Gaps = 14/306 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M+ L + +A A + + TIA ++ T NPF+ +++ G + A K NL++ Sbjct: 1 MRLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQ 60 Query: 63 D--SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 S+ + +L +L R + L++ +S + +K ANQ NIP++ LD Sbjct: 61 AVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPA 120 Query: 121 -------EVVSHIASDNVLGGKIAGDYIAKKAGEG--AKVIELQGIAGTSAARERGEGFQ 171 ++ I+SDN G A +Y+ K G+G KV+ ++G+AG R +GF Sbjct: 121 VLQREGVKIAFSISSDNRRAGASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGFT 180 Query: 172 QAVA--AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 + + A ++A+ P D+DR+K N+ + L HPD+ A++ ND MALGA+ A+ A Sbjct: 181 ERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRHPDLAAIYCANDTMALGAVEAVFAA 240 Query: 230 GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 GK V+VVG DG D K++ G+L A++AQLP +G++ +E KV+KGE+V K V Sbjct: 241 GK-KVLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGEQVDPKIIVP 299 Query: 290 LKLVVK 295 ++ K Sbjct: 300 TLVIDK 305 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 157/291 (53%), Gaps = 14/291 (4%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 N+ K + L+SA+ A A K IAL++ TL+N +F+S++ GA++ A + +L+V Sbjct: 8 NIFKFSALISAL----PALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIV 63 Query: 62 LDSQNNPAKE--LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 ++ + E + V+++ + +++ P DS A A + A +A IP+I LD + Sbjct: 64 QVAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDA 123 Query: 120 GEVVS------HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 + ++ DN GG + +A+ G+ V L+GI G +R G +A Sbjct: 124 KAAEAAGLKFNYVGVDNFNGGYLEAKNLAEAIGKKGNVAILEGIPGVDNGEQRKGGALKA 183 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK- 231 A + ++ASQ A+++ + L V N+LTA+P++ +FA ND MA+GA+ A++ AG Sbjct: 184 FAEYPDIKIVASQSANWETEQALTVTTNILTANPNINGIFAANDNMAIGAVTAVENAGLA 243 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 V+V G+DG P + V GK+ TI QLP + A +E A K + +++ Sbjct: 244 GKVLVSGYDGIPLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 151/288 (52%), Gaps = 7/288 (2%) Query: 14 ALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELA 73 + S + A + T+NNPFFV L +G +KE + G LV+LD+Q N K+ Sbjct: 27 SHSPQSDSTADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGDRLVILDAQFNSLKQKN 86 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE---VVSHIASDN 130 ++ DL ++ + +NP + + + ++ AN+ +P+I +D K + +V +ASDN Sbjct: 87 DLSDLILQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPVKKADEELIVCTVASDN 146 Query: 131 VLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADF 189 V G++A +AK A+++ L ++ A +R GF+ + H +L Q A Sbjct: 147 VRAGELAAQALAK-VNPKARLVVL-HLSVNKACIDRVAGFKTELEKHPEMKILDVQEAQG 204 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKA 248 VM++L+ +PD+ AVFA ND ALG + AL +A K D V +V DG+ G KA Sbjct: 205 TTEGARPVMRDLIGRYPDLDAVFAINDPNALGVISALDSANKLDQVTIVTVDGSQAGIKA 264 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + GKL +T AQ P +IG E LKGE V+ V ++L+ + Sbjct: 265 IQAGKLHSTSAQFPREIGKIAAEKMLAHLKGEPVEKDVKVRVELITAE 312 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 165/299 (55%), Gaps = 8/299 (2%) Query: 1 MNMKKLA-TLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 M K L+ L S VAL+ A A + + I + T +PF+++L D +KEA L Sbjct: 1 MFRKSLSRILFSGVALAMM--AGAASAEGIGASLLTQQHPFYIALADAMKKEAQAENVPL 58 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 V + + +K+LA+V+D +G +++I+P DS V +A+ A +A I VIT+D A Sbjct: 59 EVSIANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANN 118 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178 +V S + +DN GG+ A + +AK GE V + + +R EGF++ +A + Sbjct: 119 VDVTSFVGTDNFAGGEKAAELMAKTIGEKGNVAVID-YPTVQSVVDRIEGFKKGIAKYPD 177 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVV 237 ++A QP R + L+ QN+L A+PD+ +F D+ AL A A+++A V V+ Sbjct: 178 IKIVAIQPG-ITRPEALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAKLENQVKVI 236 Query: 238 GFDGTPDGEKAVN-DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GFDG + AV D + IAQ PDQ+G VETA KV+KGE+V AK P+ +V K Sbjct: 237 GFDGMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPIVPGVVTK 295 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 159/282 (56%), Gaps = 4/282 (1%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 +A K TI + + ++ F+V+ DG +K A GY LVVL++ N ++++ VQ+ Sbjct: 19 AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQN 78 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 L + ++ D+ A V A ANIPVI +D++ +G+V + I SD+V Sbjct: 79 LVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRP-QGDVTTFIGSDSVKASTEL 137 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 DY+AK+ G + ++G+ G+S ER +G + + V+++ AD+D K N Sbjct: 138 CDYLAKQMGGKGNLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADWDENKAYN 197 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAA 256 V Q++LTA+P++QA+FAQND MALGA +A AG+S++ +V DG P A+ G++ A Sbjct: 198 VAQDVLTANPELQAIFAQNDGMALGAAKAAAQAGRSNLKIVSVDGFPQVYDAIESGQVLA 257 Query: 257 TIAQLPDQIGAKGVETADKVLKGE--KVQAKYPVDLKLVVKQ 296 T++Q P Q+G V TA K + GE +Q + LV K+ Sbjct: 258 TMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKE 299 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 137/302 (45%), Gaps = 10/302 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 M L ++ + L S+ K I L L++ + ++ + + EA + Sbjct: 1 MKHPFLLVWLTLIVLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYDDVEI 60 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 ++ D+QNN ++ ++DL + +L+I+P S+ + + A +A IP I DR+ Sbjct: 61 IIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKVNT 120 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 + S + ++N G AG+Y A A ++E+ G+ TS A+ER +GF A+ + Sbjct: 121 DQYTSFVGANNYEIGLAAGNYAANYLPPNAIILEIWGLTQTSPAQERHKGFVDALRERED 180 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALR---ALQTAGKSDVM 235 + ++ L HP+ + V+A ND MA+ A A + ++ Sbjct: 181 LSFRKIEGQWLVDTARMELRKL--EHPEQIDFVYAHNDMMAIAAREYFMAWDSIRGRELR 238 Query: 236 VVGFDGTP-DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++G D G +AV DG++ A+ G + + TA ++++GE V P+ V Sbjct: 239 IIGVDAVAGAGLEAVEDGRINASFLYP--TGGEQVIRTAMRIIQGEPVDKFIPLRTAPVD 296 Query: 295 KQ 296 Q Sbjct: 297 HQ 298 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 161/322 (50%), Gaps = 29/322 (9%) Query: 3 MKKLATLVSAVALSATVSANAMA--------------------------KDTIALVVSTL 36 MK++ + + + A++A++ A + K T LVV + Sbjct: 1 MKRILSAILSAAMAASLVACGSSQSHSSAPADTPAPSVPAESAADAPDDKLTFGLVVMST 60 Query: 37 NNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSD 94 N+ ++++LKDGAQ+ D +G LV N+ +++ +++L +L+ P DSD Sbjct: 61 NSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLDSD 120 Query: 95 AVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 A+ V+ A A IPVI +D + S IA+DNV GG++A + + + G +V+ + Sbjct: 121 ALAAPVEKAMDAGIPVIVIDSAVNTDKYTSFIATDNVAGGRMAMERLIESIGGSGEVVVV 180 Query: 155 QGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 214 +AG + RG+G ++ A + Q D+ + + +N++ +P+++ +FA Sbjct: 181 NALAGIPSNDARGQGAEEYAATVDGITVLPQQHCLDQAEAMTATENVIIGNPNLKGIFAT 240 Query: 215 NDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETA 273 + ALGA +A+ + GK ++ +V FD D K + DG + A + Q P ++G G+E A Sbjct: 241 FNRGALGAAQAIVSKGKAGEIKMVAFDADADEIKLLEDGTIDALVVQQPYEMGKIGIEYA 300 Query: 274 DKVLKGEKVQAKYPVDLKLVVK 295 K L GE+V ++ + K Sbjct: 301 VKALNGEEVPKTVAPEVVIATK 322 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 134/301 (44%), Gaps = 9/301 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMA--KDTIALVVSTLNNPFFVSLKDGAQKEAD--KLG 56 M ++ L AL A ++ + I + + + + ++ + ++E + Sbjct: 1 MTFRRYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQAD 59 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 +++ +++ K++A+++ + +L+++P +S+A ++ A Q IPVI +DR+ Sbjct: 60 AEVLIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRK 119 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA- 175 +++ ++N GK AG Y + E++G G+++ ER +GF A+ Sbjct: 120 IATESYTAYVGANNYQIGKEAGLYAIGVLKGKGNIAEVRGTKGSTSDAERHKGFVDALKN 179 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 A + ++A +F + MQ + HP + VFA ND MA G A Sbjct: 180 APEVQIVAETWGNFLQADAKTQMQQIFQEHPHIDLVFAMNDPMAAGTHEAAMQFNGKIPF 239 Query: 236 VVGFDGTPD-GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++G D G + + + A+ G K +E A K+L + Q + ++ +V Sbjct: 240 IIGVDALQQVGIQNIENSVQDASFIYP--TGGEKVIELAMKILHKQPFQRENILNTTVVD 297 Query: 295 K 295 K Sbjct: 298 K 298 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 158/298 (53%), Gaps = 5/298 (1%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKK+ L +A+A + + + I L PF V ++ A K A +LG NL VL Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 DSQ + K++A++++ RG + +++P D +AV AV A +PV+TLDR + Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDKK 120 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFN 180 V H ++N GG+ GD++ + GA ++ L G G+S+ ER +G + ++ A K+ Sbjct: 121 VPHFGANNYKGGQAIGDFVKARFPNGADIVLLTGQPGSSSNIERTQGIRDSLKAGGSKYR 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG--KSDVMVV 237 ++A Q ++ R +G+ +++++L + P Q + + ND+MALGA+ ALQ+ G +VMV Sbjct: 181 LVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQSQGLKPGEVMVT 240 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GFD P+ V DG LAAT Q P + + ++ + ++ K Sbjct: 241 GFDAVPEALARVRDGWLAATADQRPGYAVTQAMTQLTNNIRTKSAITGADYPPTMITK 298 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 163/316 (51%), Gaps = 23/316 (7%) Query: 1 MNMKKLATL----VSAVALSATVSANAMAKD-----------TIALVVSTLNNPFFVSLK 45 M ++K+ +L + A+ + S +K TI + TL + FF+ + Sbjct: 1 MRVRKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGSDKKDLTIGVSTITLQHQFFIDID 60 Query: 46 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ 105 +G +++A +LG ++V D + AK+ + ++D + +++ TD+ A+ AV+ A + Sbjct: 61 EGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNVDGMIVLGTDNSAIVPAVEGAFE 120 Query: 106 ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY----IAKKAGEGAKVIELQGIAGTS 161 +PV+T+D + S++ + + GK G+Y I +K G +++ + + + Sbjct: 121 K-MPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKKYIDEKLGGKSEIAIVTDLK-SQ 178 Query: 162 AARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMAL 220 +R +GF+ A+ +L SQP +DR + LN ++NL+ ++PDV ++A + L Sbjct: 179 IQMQRIDGFKDALKGSANVKILNSQPG-YDREESLNTVENLIQSNPDVDIIYATAENSVL 237 Query: 221 GALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE 280 GA AL++A DV +VGFD T + + DG + A I Q P ++G VE K +KGE Sbjct: 238 GAKAALESAKNKDVKIVGFDLTEEASSGITDGTILAMIQQQPKEMGRLAVEAVVKAIKGE 297 Query: 281 KVQAKYPVDLKLVVKQ 296 KV+ PV L K+ Sbjct: 298 KVEKNIPVPALLYDKE 313 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 152/276 (55%), Gaps = 10/276 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 T+ S NP+ V+L + Q+ AD+ G N + D+ ++ A +AN++D+ + IL+ Sbjct: 51 TVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIEDMLAKDLDILV 110 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 I P + + + A + +PVI L + T+GE V+ + SD G+ + I +K + Sbjct: 111 IAPMEDTGLEAVLDEAAEKGVPVI-LSARTTQGEYVTTVYSDQAWEGERCAELIGEKIPD 169 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTA- 204 AKV+EL+GI GTS+ R +GF+ +A ++ Q A+F R + ++ M N+L A Sbjct: 170 -AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFSRQEAMDAMANILQAK 228 Query: 205 HPD-VQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 PD + AV+ NDEMALGA++A++ AG + D+ VVG DG + + V G++ T+ Sbjct: 229 GPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELVKSGEMLGTVQC 288 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 P G E K+L GE VQ + V +++ K+ Sbjct: 289 SPKH-GPTVFEVIQKILDGETVQKETIVPDQVITKE 323 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 149/283 (52%), Gaps = 9/283 (3%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNN--PAKELANVQDL 78 A + K + LV+ +L NPF++ ++ GA++ A++LG L+V N ++++ + + Sbjct: 30 ATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDEQ 89 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-------VSHIASDNV 131 G L+I P DS A+ + AN+ + ++ +D + + + ++ DN Sbjct: 90 LAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDNE 149 Query: 132 LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDR 191 GG AG +A+ AG AK + ++G ARER +G ++A+ + V+AS+ A + Sbjct: 150 FGGYEAGKILAELAGPDAKALIIEGPRSAINARERRDGARRALQENNIEVVASEVASWKL 209 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 + QN+ +P++ +FA ND MALGAL Q G +D ++ GFD PD AV + Sbjct: 210 ESAYALTQNVHARNPELNVIFAANDMMALGALLYAQEHGLNDWLIAGFDNIPDARAAVRE 269 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G+LA TI Q D+ G +GV TA +L + V V +++ Sbjct: 270 GRLAVTIDQQADRQGYQGVATAVDLLNDKAVDDVVLVKTRVIT 312 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 155/299 (51%), Gaps = 5/299 (1%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M L + ++A +S A A + IA++ + +NPFF + +GA+ +A +LGY + Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK- 119 V ++ K+ ++ R K ++++ SDA +K A A IP +DR+ + Sbjct: 61 VASHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREINET 120 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-K 178 G VS I S+N G ++ + G K IEL G + A R +G+ + H Sbjct: 121 GIAVSQIVSNNYQGAQLGAEKFVTLMGGKGKYIELLGRESDTNAHVRSQGYHDVIDEHSD 180 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 ++A Q A++ + + N M+++L A+PD+ V + ND MALGA AL+ AG++DV+VVG Sbjct: 181 MKMVAQQTANWSQTEAFNRMESILQANPDITGVISGNDTMALGAEAALKAAGRNDVVVVG 240 Query: 239 FDGTPDGEKA-VNDGKLAATIAQLPDQIGAKGVETADKVLKGEK--VQAKYPVDLKLVV 294 FDG+ + +N+G + AT+ Q V AD+ LK K ++ K +D L+ Sbjct: 241 FDGSDYVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKTGKTGLEEKQLMDCVLID 299 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 160/326 (49%), Gaps = 31/326 (9%) Query: 1 MNMKKLATLVSAVALSATVSA-----------NAMAKD--------------TIALVVST 35 M K+ ++S + L A NA +KD I Sbjct: 10 MKKKRALRILSLILLCALTFTACKKNVGTPEDNAASKDENTEEKDKDEQESWKIGFSGID 69 Query: 36 LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDA 95 + NP+F++L+ ++E D L+V D + +P + + +Q++ G ++++P D + Sbjct: 70 MENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEGINAIILSPVDWEK 129 Query: 96 VGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 + +++ +A++ ++ +D Q + + V ++I SDN G + G+ + K+ +G KV L Sbjct: 130 ITPSLEALKEADVKIVNVDTQVKEMDYVDAYIGSDNYNAGVLCGEDLIKRCPDGGKVAIL 189 Query: 155 QGIAGTSAARERGEGFQQAV--AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 + ++ ER GF++ + A + F ++A + + K L Q +L+ + D+ A+ Sbjct: 190 E-CPTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQKILSENSDIVAIM 248 Query: 213 AQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN--DGKLAATIAQLPDQIGAKGV 270 ND+MA+GA A+ A + +++ G DG+PD +K + + ++A T+AQ P +G Sbjct: 249 CGNDQMAVGAKTAMNVAEQGQILIYGVDGSPDIKKELKKTENQIAGTVAQSPISMGKDAA 308 Query: 271 ETADKVLKGEKVQAKYPVDLKLVVKQ 296 T +L G+ + + ++ ++ ++ Sbjct: 309 NTVLNILNGKDYEKEIKENVFMINQE 334 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 83/278 (29%), Positives = 153/278 (55%), Gaps = 4/278 (1%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLT 79 A K I + L+ +++++K GA+ A +LG +V + + AK++ + D Sbjct: 26 QASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVINDFV 85 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGD 139 + +++ TD++A+ +K A++A IPVIT+D +SHIA++N K A + Sbjct: 86 NKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAAE 145 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVM 198 +A G+ +V + +AG + + R GF++ ++ +K +++A Q + D + V Sbjct: 146 VLANIIGKKGEVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMKVT 205 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAAT 257 +N+LTAHP+++ +FA N+ A+GA RAL+ GK+ DV++VGFD A+ +G + A Sbjct: 206 ENILTAHPNLKGIFAANEAGAVGAARALKARGKTADVILVGFDAAQTEIDAMKEGIIDAL 265 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 I Q P +G +GV+ A L+GE+V+ + + Sbjct: 266 IVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATP 303 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVR 81 K TIALV+ TL NPFF ++ GA++ LG NL+V + + + +++ V DL Sbjct: 51 QDKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIEL 110 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-------VVSHIASDNVLGG 134 L+I P DS + +K A I VI +D + V I+ DN L Sbjct: 111 KVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAA 170 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF-NVLASQPADFDRIK 193 + + +K + +V ++GI G A R G +A + KF ++A++ A++ + Sbjct: 171 YKSTKVLTEKLTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDE 230 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK 253 + L +P++ A+F ND MALG + LQ+ GK +V VV FD P AV G Sbjct: 231 AFELAAKLYNKNPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGV 290 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 L AT+ Q + G +G+ +A+ +L G+K K ++ K++ K Sbjct: 291 LLATVDQDAAEQGYQGILSANNILSGKKTPLKITIEAKIITK 332 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 17/270 (6%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL------DSQNNPAKELANVQDLTVRG 82 IA + T ++PF+ ++ G Q A +LG +V ++ + K+++ + +L Sbjct: 80 IAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNN 139 Query: 83 T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI 141 L+I P DS + ++ A Q I VI +D ++++ + DN GG+I G+++ Sbjct: 140 DLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQILTFVTFDNFEGGQILGEWV 199 Query: 142 AKKA------GEGAKVIELQGIAGTSAARERGEGFQQAVA----AHKFNVLASQPADFDR 191 +K ++ L+G ER +GF + + + +L + AD++ Sbjct: 200 IQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKSADWET 259 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 K + Q L P + + A +D+MA+GA A+Q A KS +++ GFDGTP G A+ Sbjct: 260 KKAKMITQAWLEKFPTIDVIMAADDQMAVGASEAVQEANKSGIIITGFDGTPYGLNAIKT 319 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEK 281 G++ ATI QLP + + L+ E+ Sbjct: 320 GQIDATINQLPRTQISLITQLMINSLEKEQ 349 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 146/287 (50%), Gaps = 6/287 (2%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQK----EADKLGYNLVVLDSQNNPAKE 71 +A+ K IA +V +L + FF+++ + A+K ADK+ ++ + N ++ Sbjct: 43 GGGQTASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQ 102 Query: 72 LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNV 131 + V+ ++I P DS+ + A+K AN A I V+T + +A G++VS++ + N Sbjct: 103 IQLVEQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDIVSYVGAQNF 162 Query: 132 LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFD 190 G + +K G KVI ++G AG S + ER EGF++A+ + +LASQPAD+D Sbjct: 163 DVGYSLATALFEKLGGQGKVILIEGKAGNSTSEERAEGFKEALKEYPGIELLASQPADWD 222 Query: 191 RIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKAV 249 R + VM+N L + + V +M LG + A+++AG+ +V + FD D A+ Sbjct: 223 RASAMTVMENCLQTYDQIDGVLTLTKDMGLGTIEAIKSAGRDKEIVSMTFDVDDDVISAL 282 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G L A+ Q + TA L G KV + + + +V + Sbjct: 283 KAGDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIMPITVVTAE 329 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 158/311 (50%), Gaps = 18/311 (5%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M K S + +S +A A A+V+ TL+NPF+V +K G + EA LG ++ + Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF 60 Query: 63 --DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-- 118 S+ + +L +DL+ + K + P S + V A + I ++ LD + Sbjct: 61 ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMD 120 Query: 119 -----KGEVVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQ 172 G V + + +DNV G +I K G EG +V ++G AG ++ R G + Sbjct: 121 NLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATE 180 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 A ++ASQPAD+DRIK L+V N+L +P+++A++ ND MA+G +A+ AGK Sbjct: 181 AFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK 240 Query: 232 S-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV------QA 284 + V+VVG DG P+ K V G++ AT+AQ P IGA G++ K KV Sbjct: 241 TGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPE 300 Query: 285 KYPVDLKLVVK 295 VD LV + Sbjct: 301 FKLVDSILVTQ 311 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 12/301 (3%) Query: 6 LATLVSAVAL--SATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 +ATL+ A SAN K+ A++ + F+ S+K GA++ +++G + Sbjct: 118 VATLLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFR 177 Query: 63 DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-- 118 +N+ +++ VQ +L+ P D+DA+ VK A++A +PV+ D Sbjct: 178 GPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNTD 237 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGE-GAKVIELQGIAGTSAARERGEGFQQAVAAH 177 G+ VS++A+DN GGK+AG+ +A GE G VI L+ G+ + +R EGF ++A + Sbjct: 238 PGDFVSYVATDNFEGGKLAGEAMANALGEKGGDVILLRYEQGSESTHQREEGFLYSIAEY 297 Query: 178 -KFNVLAS-QPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGK-SD 233 VL+S Q A ++ Q LL D + + A GALRAL+ Sbjct: 298 SNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTVCEPTAEGALRALRERKLAGK 357 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 V +V FD + ++++ G++ A + Q P +G + V+T L+GE + + + Sbjct: 358 VKLVTFDSSDSLRESLSAGEVNAIVLQDPVAMGYQAVKTMAAHLRGETPEQFIDTGVFVA 417 Query: 294 V 294 Sbjct: 418 T 418 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 165/301 (54%), Gaps = 15/301 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK+ TL S +A+ V + ++ A+++ TL+NPF+V++K+G + EA LG ++ + Sbjct: 1 MKRFKTLKSCLAILGLVCSVSVYSAEYAVILKTLSNPFWVAMKEGIENEAKALGVDVDIF 60 Query: 63 --DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-- 118 S+ + +L +DL + K + P + A + I ++ LD + Sbjct: 61 ASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIK 120 Query: 119 -----KGEVVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQ 172 KG V + I +DNV G A +I K G EG +V ++G AG ++ R G ++ Sbjct: 121 NLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGGEVAIIEGKAGNASGEARRRGARE 180 Query: 173 A-VAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 V + ++ASQPAD+DRIK L+V N+L+ +P+++A + ND MA+G +A+ AGK Sbjct: 181 VFVKSSSIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYVANDTMAMGVAQAVINAGK 240 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 ++VVG DG P+ K V++ KL ATIAQ P IGAKG++ + + PVD+ Sbjct: 241 QGKILVVGTDGVPEARKMVSERKLTATIAQDPAMIGAKGLKLLVDAAR---AGKQIPVDV 297 Query: 291 K 291 + Sbjct: 298 E 298 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 130/311 (41%), Gaps = 23/311 (7%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M+KL +S V ++ A TI ++ ++ +P++ ++ G + LG + Sbjct: 1 MRKLLVFLSVVLITGLSLA-----LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKFF 54 Query: 63 DSQ-NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 Q + +L ++ G + I P+D AV +K A + IPVITLD + Sbjct: 55 VPQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSG 114 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV 181 +I +DN G AG + + G KV+ G + +R +GF+ A+A + + Sbjct: 115 RYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIADSEIEI 174 Query: 182 LASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFD 240 + + D + +++ + L AHPD+ A F ++ AGK V +V FD Sbjct: 175 VDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFD 234 Query: 241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETAD---------------KVLKGEKVQAK 285 TPD + V +G + AT+ Q P +G V KV KV Sbjct: 235 TTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIGVQNTLMMLPKVTVDGKVDYV 294 Query: 286 YPVDLKLVVKQ 296 + +V + Sbjct: 295 IDTGVDVVTPE 305 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 135/301 (44%), Gaps = 9/301 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMA--KDTIALVVSTLNNPFFVSLKDGAQKEAD--KLG 56 M +K L AL A ++ + I + + + + ++ + ++E + Sbjct: 10 MTFRKYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQAN 68 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 L++ +++ K++A+++ + +L+++P +S+A ++ A Q IPVI +DR+ Sbjct: 69 TELLIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRK 128 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV-A 175 +++ ++N GK AG Y + E++G G+++ ER +GF A+ Sbjct: 129 IATESYTAYVGANNYQIGKEAGHYAIGILKGKGNIAEVRGTKGSTSDAERHKGFVDALNN 188 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 A + ++A +F + MQ L HP++ VFA ND MA G A Sbjct: 189 APEVRIVAETWGNFLKADAKVQMQQLFQQHPNIDLVFAMNDPMAAGTHEAAMQFNGKIPF 248 Query: 236 VVGFDGT-PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++G D +G + + A+ G K ++ A K+L + + + ++ +V Sbjct: 249 IIGVDALQQEGISNIENNVQDASFIYP--TGGEKVIDLAMKILHKQPFERENILNTAVVD 306 Query: 295 K 295 K Sbjct: 307 K 307 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 177/300 (59%), Gaps = 11/300 (3%) Query: 3 MKKLATLVSAVALSATVSA------NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG 56 ++K L++A L+ + + A + L +ST NPFF+ ++ GAQ +A++LG Sbjct: 2 LRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELG 61 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 +L VLD+ ++ + A + D G ++NP DS+A+ AV N+ IP IT+DR Sbjct: 62 IDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVDRT 118 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 T +V + I S+N GG A +AK +VI L+GI G+S++ ER EGF QA+A Sbjct: 119 ITGADVAALIDSNNTEGGAAAASVLAKAIRAQGEVIVLRGIEGSSSSAERYEGFTQAMAE 178 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 H ++A++ ADFDR +++ +LL HPDV +FA+NDEMALGA+ AL DV Sbjct: 179 HPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAGIFAENDEMALGAVDALGERAGKDVK 238 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 VVGFDGT +G +AV + KL ATIAQ ++GA +E A K+L GE ++ + +V + Sbjct: 239 VVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGKLLDGEAAES-VHTPVMVVTR 297 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 159/299 (53%), Gaps = 8/299 (2%) Query: 4 KKLATLVSAVALSATVSAN----AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 ++ L + AL A + + + + T + F+ L+ G ++EA K + Sbjct: 8 RRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTV 67 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + + + A++ +++ TV+ +++ PTDS +G A+ ANQA+IPV T D +A + Sbjct: 68 RLDAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKE 127 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178 G VVSHIASDNV GG++AG+Y AK+ +V + + ER GF++A+ + Sbjct: 128 GAVVSHIASDNVAGGRLAGEYAAKRLNGRGQVAIID-QPYIQSVIERVRGFEEALKPYPN 186 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 V+A D R + L ++LL + + AVFA NDE A G + A++ AG+ + V+G Sbjct: 187 IRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRKGIFVMG 246 Query: 239 FDGTPDGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 +D + + K + GK L A IAQ P +IG + + L G+ V+ PV ++LV K Sbjct: 247 YDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVDK 305 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 88/308 (28%), Positives = 144/308 (46%), Gaps = 19/308 (6%) Query: 4 KKLATLVSAVALSATVSANAMAKDT-----------IALVVSTLNNPFFVSLKDGAQKEA 52 KK A +AV L+A A + DT I L+V ++NPFF ++ GA++ A Sbjct: 6 KKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAA 65 Query: 53 DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 +G D+Q + A + + +G +++I+ D + + A++ A QA I VI Sbjct: 66 ASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIA 125 Query: 113 LDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 +D A + V + +D V G+ + Y+ ++ G V+ + G R+R G Sbjct: 126 VDTPAKSADAV--VMTDAVQAGEKSCQYLFEQMGGKGNVLLVDGTP-LQTIRDRITGCNN 182 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 V V+ Q + DR GL V ++LTA PDVQ +F ND ALGA+ A+Q A K Sbjct: 183 VVKKFPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQGIFGMNDPSALGAVLAVQQAHK 242 Query: 232 SD-VMVVGFDGTPDGEKAVND--GKLAATIAQLPDQIGAKGVETADKVLKGEKV-QAKYP 287 + V V G DG+P+ + T Q P ++ K VE A ++ + + Sbjct: 243 AGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNIIDNKPPAETTIL 302 Query: 288 VDLKLVVK 295 + +LV + Sbjct: 303 IPSELVTR 310 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 161/306 (52%), Gaps = 17/306 (5%) Query: 6 LATLVSAVALSATVSANAMAKD------TIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 L L ++ + +A+ K + + NNP+ ++ + A K G+ L Sbjct: 24 LLALAIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQL 83 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 V+ D+ ++ +K+++++Q++ + +L+ P + + V A +A IPVI +DR + Sbjct: 84 VMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQ 143 Query: 120 G------EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 + ++ I SD + G A D++ K G AK+IEL+G G SAA +R +GF + Sbjct: 144 SVAKAGRDYITFIGSDFIDQGHRAADWLVKATGGKAKIIELEGTTGASAANDRKKGFDEI 203 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK- 231 +A + ++ASQ DF R KG VM+ LL AHPDV AV+A NDEMALGA+ A++ AGK Sbjct: 204 IAKNPGMTIIASQSGDFARDKGRQVMETLLQAHPDVTAVYAHNDEMALGAIAAIKAAGKQ 263 Query: 232 --SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 D+ +V DGT G A+ G+L A++ P G + A + KGEK+ V Sbjct: 264 PGKDIQIVTIDGTKGGMDAIAAGELGASVQSSPF-FGPLACDVAQRYAKGEKIPTWVKVS 322 Query: 290 LKLVVK 295 K K Sbjct: 323 DKFYDK 328 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 28/317 (8%) Query: 7 ATLVSAVALSATVSANA------------MAKD--TIALVVSTLNNPFFVSLKDGAQKEA 52 A V A+A A+ + A AKD I V L NP++ S G + A Sbjct: 6 AACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRAGA 65 Query: 53 DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 ++ G +V+ D +++ ++++ DL +G L+I P A+ + + A+ IPV+ Sbjct: 66 EEAGIEVVIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGEKIPVVV 125 Query: 113 LDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG---AKVIELQGIAGTSAARERGEG 169 D T+G+ +I S+N GG++A +++ +K G +V ++ AG+ ER G Sbjct: 126 ADIG-TEGDYDGYILSNNYEGGRLAAEHVVEKLGGTPGPHQVGVIELHAGSVVGEERVSG 184 Query: 170 FQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT 228 F + F +++S + G Q++L+A+P++ ++A ND+ A+GA RA++T Sbjct: 185 FVDRLGEEENFEIVSSLDGNDTVDGGFTAAQDMLSANPELDVIYAANDDSAVGASRAMET 244 Query: 229 AGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE----- 280 AG S ++GFDG+ + G ++ T+AQ P G K VETA +L GE Sbjct: 245 AGVSVANGFTLIGFDGSDPALDLIEQGVMSGTVAQDPFGQGQKAVETALALLNGEDPGYS 304 Query: 281 -KVQAKYPVDLKLVVKQ 296 + +++V + Sbjct: 305 DEATKTIYFPVEMVTAE 321 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 9/277 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGTKIL 86 IA+V + F+ S+ GA K + +L ++V +++ ++ V +G + Sbjct: 43 IAVVPKGTTHEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVSGI 102 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 ++ P D+ A+ V+ A QA IPV+ D + VS +A+DN G++AG+++ K G Sbjct: 103 VLAPLDATALRAPVRAARQAKIPVVVFDSDLASDDHVSFVATDNEAAGRLAGEHLGKAIG 162 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QPADFDRIKGLNVMQNLL-- 202 E KV+ L+ G+++ + R +GF AV A +AS Q + ++LL Sbjct: 163 EDGKVVVLRYQEGSASTQHREKGFLDAVRAMPGVTVASENQYGGATTESAFHKSESLLLA 222 Query: 203 --TAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIA 259 A + VF N+ G L+AL+ V VGFD + A+ +G + A + Sbjct: 223 QRAAEGAIAGVFTPNESTTFGMLQALRKTNVARKVKFVGFDASEKLLGALREGDIEALVV 282 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q P +G V+T L GEKV A+ ++V +Q Sbjct: 283 QNPFNMGYVAVKTMVAHLHGEKVAARIDTGSRVVTRQ 319 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 14/304 (4%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS- 64 + TL +A++ A K TIAL+ + F++++ GA++ A +LG L+ Sbjct: 11 VLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGGP 70 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA------- 117 + +P ++ + + R +LI PTD + + +K A++A I +IT+D Sbjct: 71 EFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQ 130 Query: 118 ----TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 ++++ASDNV GG+IA +AK GE KV G S +R +GF++ Sbjct: 131 TGKGNADFPLAYVASDNVEGGRIAARALAKAIGEKGKVYVSNVKPGISTTDQREQGFKEE 190 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 + + VLA+Q D D K + + L +PD+ VF N A+GA ++ AGK Sbjct: 191 MKKYPGITVLATQYNDNDANKAASQLAAALARNPDLAGVFGANLFSAIGAANGVKNAGKR 250 Query: 233 D-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 V V FD + G + + Q P ++G VE A K L GEK+ +Y Sbjct: 251 GAVKVAAFDCPESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEKIPNRYGTGYT 310 Query: 292 LVVK 295 ++ + Sbjct: 311 VIDR 314 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 90/293 (30%), Positives = 152/293 (51%), Gaps = 8/293 (2%) Query: 11 SAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK 70 ++ A +A A+ + + + + + ++ Q EA+K L+ D QN Sbjct: 30 ASSAEAAGRKPKALTEIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNN 89 Query: 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE--VVSHIAS 128 ++ V +G +++I P +S +K A +A IPV+ R E + + + Sbjct: 90 QVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAEEDLYETVMVA 149 Query: 129 DNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPA 187 D V G+ AG+++AK+ A++IEL G A R GF +A+A H ++ASQ Sbjct: 150 DFVWEGRRAGEWLAKQTNGKARIIELVGTPAADVAVMRKTGFAEAIAKHPDMKIIASQSG 209 Query: 188 DFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTP 243 DF R KG VM+ LL+AH ++ AV+A ND+MALGA++A+Q AG D++V+ D Sbjct: 210 DFTRTKGKTVMETLLSAHKGEINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAVK 269 Query: 244 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +A+ +GKL AT+ P G +T DK+++GEKV + V ++ ++ Sbjct: 270 PAFEAMMEGKLNATVECNPMH-GPLLFDTIDKIVRGEKVPKRTIVPGQIFERE 321 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 151/285 (52%), Gaps = 7/285 (2%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 T A A+ + + + L+ PFFV+++ + EA KLG + VLD+QNN +K+++++Q Sbjct: 28 MTGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQISDLQ 87 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-VVSHIASDNVLGGK 135 V+G K++++ PTDS A+ A + + VI++DR G+ V H+ +DNV GG+ Sbjct: 88 AAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKTAVPHVGADNVAGGR 147 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPADFDRIK 193 D++ K GA+V+ + G+S++ ER +G +AA F ++ Q A+ R + Sbjct: 148 AMADWVVKTYPAGARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQTANSKRDQ 207 Query: 194 GLNVMQNLLTAHPD--VQAVFAQNDEMALGALRALQTAGKS--DVMVVGFDGTPDGEKAV 249 L V QN+LT+ D + ND+MA+GAL A++ AG V V+GFD P+ + Sbjct: 208 ALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKVIGFDAIPEALARI 267 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G++ AT+ Q P + A +K + L+ Sbjct: 268 KAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVSLKPVLIT 312 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 146/294 (49%), Gaps = 6/294 (2%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 L LV A +A A A+ TLNNPFFV L DG ++ D+ G LV LD+Q Sbjct: 28 LIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGDRLVTLDAQ 87 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-S 124 + K+ ++ D+ + + +NP + ++V + A A IPVI +D ++V + Sbjct: 88 FSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPVPDADLVLA 147 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVL 182 +ASDNV G++A + + AKV LQ + A +R GF +A ++ Sbjct: 148 QVASDNVAAGRLAAQALGDARPQ-AKVAILQ-YSVNKACVDRVAGFTDVLAKSFPGATII 205 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDG 241 A Q VM++LL PD+ AVF ND A+G + A+ AG+S V+VV DG Sbjct: 206 ARQDVKGTSEATRPVMRDLLGRFPDLDAVFPINDPGAIGCVSAIDAAGRSGKVLVVTVDG 265 Query: 242 TPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + + + + +G + +T AQ P +IG+ A L G+ V + V + LV K Sbjct: 266 SREAAQFILNGGIHSTSAQFPKKIGSLAAGAAYDHLAGKPVDKEIKVPVTLVTK 319 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 146/295 (49%), Gaps = 6/295 (2%) Query: 7 ATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN 66 A + + S +AL+V + F+ +++ GA+ A KLG L V + Sbjct: 27 AVFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEE 86 Query: 67 -NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-S 124 +PA + + + +LI PTD A+ ++ A +IPV+ +D K E+ + Sbjct: 87 FSPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIALA 146 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLA 183 I+SDNV GG++AG+ +A++ G KV+ + G S +R +GF++A+ + L Sbjct: 147 RISSDNVEGGRMAGEALAEQIGGKGKVLLISVKPGISTTDQRKQGFEEAIKQYPDIEYLG 206 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGT 242 ++ + D + ++ + L AHPD+ +F N GA ++ AGK D V VV FD + Sbjct: 207 TEYCNDDPTQAASITTSTLQAHPDLAGIFGANVFSGQGAGTGVRQAGKRDQVSVVAFDAS 266 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQ-AKYPVDLKLVVK 295 P + + G L IAQ P+ IG +GV+ A + L+ GE+ + + V + Sbjct: 267 PTQVEDLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGFTTVTR 321 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 148/273 (54%), Gaps = 9/273 (3%) Query: 24 MAKDTIALVVST-LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRG 82 +A T+ S NPF ++ + EA K G L+ +++Q+ +K++++VQDL +G Sbjct: 78 LASATVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKG 137 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG---EVVSHIASDNVLGGKIAGD 139 +L+I P +SD ++ A+ IP++T+DR+ G + VS I SD V G+ A D Sbjct: 138 ADLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYVSFIGSDFVEQGRRAAD 197 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ--AVAAHKFNVLASQPADFDRIKGLNV 197 + + G +V L G AG + ER +GF+ A A V+ Q DF R KG +V Sbjct: 198 KMIEATGGKGEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKGQSV 257 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD--VMVVGFDGTPDGEKAVNDGKLA 255 + L+ + P ++ ++A+NDEM LGA+ AL++AGK V +V DGT + K + DG ++ Sbjct: 258 TEQLIQSKPGIKGIYAENDEMGLGAVNALKSAGKKPGAVKIVTVDGTRNAVKQIVDGWIS 317 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 I P + G +T D KGE+VQ + Sbjct: 318 GVIESNP-RFGPLAFQTLDTFTKGEEVQQDIVI 349 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 144/323 (44%), Gaps = 29/323 (8%) Query: 1 MNMKKLATLVSAVALSATVSA---------------NAMAKDT----IALVVSTLNNPFF 41 M KK LV V + + ++T I LV+ + NP+F Sbjct: 1 MGWKKRGWLVIGVLCGLVACSESIPRVDNRSHSAFSQSAGQNTSPARIVLVMKSPTNPYF 60 Query: 42 VSLKDGAQKEADKLGYNLVVLDSQNNPA--KELANVQDLTVR-GTKILLINPTDSDAVGN 98 L +GA + + G +L + + + A +++ + ++ + ++I PTDS + Sbjct: 61 SELANGASRAQLETGIDLSIKVAHEDDALEQQIRLIDEVIAKHQADAIVIAPTDSIRLVP 120 Query: 99 AVKMANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKV 151 + A +A I VI + + VV I+ DN +A+ G+KV Sbjct: 121 VLARARKAGIHVINIGNRLEPRIVALYGMPVVPLISIDNASAAYQVAGKLAEGLPRGSKV 180 Query: 152 IELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 ++G+ GT+ R+R EG QA + V+A Q A + + V LL +PD++A+ Sbjct: 181 AIIEGLLGTNNTRQRTEGALQAFSEAGLRVVAKQSARWKGDEAYQVTAQLLRDYPDLRAI 240 Query: 212 FAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 F ND MALGA R L+ G + V + GFDG + A++ +L ATI Q + G V Sbjct: 241 FCSNDMMALGAARYLREKGITGVRLAGFDGITEARSALHQRQLVATIDQHASEQGYLAVR 300 Query: 272 TADKVLKGEKVQAKYPVDLKLVV 294 A + G + + VD +L+ Sbjct: 301 LAVDAIAGRPLAEETLVDTELLT 323 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 5/274 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K T+NN F+ + + + + +K G ++ LD + K+ ++ L R Sbjct: 44 KKLFGATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDA 103 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS-HIASDNVLGGKIAGDYIAKK 144 + +NP D AV + A +A IPVI +D Q + ++V+ I SDN G + + K+ Sbjct: 104 IFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIVSDNYKAGVLCAKEMMKQ 163 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLT 203 + A ++ L A S A +R GF + +K + +LAS + L + ++ Sbjct: 164 -KDQANIVLLTHNAARS-AVDRINGFLDTIKNNKNYKILASADTQGQIERALPKVDKIIE 221 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 + ++ V ND A+GAL AL + G + V+V G DG+P+G+K + +G + T AQ P Sbjct: 222 EYQNIDVVMGLNDPAAMGALAALDSKGAREGVLVYGIDGSPEGKKLIKEGMMTGTAAQSP 281 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q+ V A ++L+GEKV+ K + ++++ K+ Sbjct: 282 KQMADTAVNAAYQILQGEKVEKKKVISVQMITKK 315 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 158/301 (52%), Gaps = 16/301 (5%) Query: 3 MKKLATL-----VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG- 56 M KL ++ A S + K + + P+ ++ + ++EA K Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60 Query: 57 -YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 Y+ ++ D+Q +K+ A+++DL R ++ + P + + + A++ A A IP+ +DR Sbjct: 61 TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120 Query: 116 QA---TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 +A VS + SD + G+ G+++AK A ++EL G AG+S A +R +GF+ Sbjct: 121 EAAGRPGEHFVSFLGSDFIAQGRRVGEWLAKATDGKASIVELTGTAGSSVAIDRAKGFRN 180 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA-HPDVQAVFAQNDEMALGALRALQTAG 230 A+A + ++A+Q ADF R + VM+N++ A D+ AV+A NDEMALGA++AL++AG Sbjct: 181 AIATYPNMKIIATQTADFSRAAAVRVMENIIQAKGSDITAVYAHNDEMALGAIQALKSAG 240 Query: 231 K---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 DVMV DG +A+ G+L ++ P + G T ++ G+K+ + Sbjct: 241 MKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNP-RFGPLVFATMEEYFAGKKIPPRII 299 Query: 288 V 288 + Sbjct: 300 L 300 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 149/319 (46%), Gaps = 24/319 (7%) Query: 1 MNMKKLATLV---SAVALSATVSANAMAKD-----------TIALVVSTLNNPFFVSLKD 46 M + LA + ++L+A S K +A + + + F+ + Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 G +K+A + G+ +LD Q + +++ +Q +G + + P +++A+G A+ N+A Sbjct: 61 GFEKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEA 120 Query: 107 NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 +PV +DR+ +GEVVS + +DNV G+ + + K GE V+ +QG+ + +R Sbjct: 121 GVPVFCVDRR-GEGEVVSTLETDNVKAGEAMAEQLVKDYGEDVDVLIIQGVLSDTPTLDR 179 Query: 167 GEGFQQAVAAHKFNVLASQP--ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 224 +G + + ++ + +P ++ L +N L +PD+ +F D + G + Sbjct: 180 TQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLETNPDLDVIFTCTDALVPGIVA 239 Query: 225 ALQTAGKS-------DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 AL+ AGK+ V + DG + K + DG + T +Q P Q G V++ L Sbjct: 240 ALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQFGIDTVKSMKTYL 299 Query: 278 KGEKVQAKYPVDLKLVVKQ 296 G KV+ K + +V + Sbjct: 300 DGGKVEEKVYYNGDVVTDE 318 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 151/283 (53%), Gaps = 6/283 (2%) Query: 1 MNMKKLATLVSAVALSATV---SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 M MK L++A+A+ + A+A K ++++V+ +NP++ + A++ A+KLGY Sbjct: 1 MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGY 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 V + + E + + ++++P ++D AV+ A +A IPV ++ + Sbjct: 61 EADVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEI 120 Query: 118 T-KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 +G + + S+N G + K G+ A+ +EL+G + A R G++ ++ Sbjct: 121 NQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKGAPSDNNAATRSNGYETVLSQ 180 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDV 234 + + S A++DR +G N Q++L A+PD+ V + NDEMALGA+ AL+ AGK DV Sbjct: 181 YPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV 240 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 +V GFDG+PD +AV G++ T+ Q V ADK + Sbjct: 241 VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYV 283 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 133/286 (46%), Gaps = 8/286 (2%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 AT S A I +VV L +P + D +K AD+ G L + DS+ + EL V+ Sbjct: 30 ATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKKDVGSELNQVE 89 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE---VVSHIASDNVLG 133 DL R +++ P D DA NA K ANIP+ L + +G S+I D+ + Sbjct: 90 DLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYKSYIGVDDTVA 149 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIK 193 G++ +Y+ K G ++ G+ G S R GF + + F ++A A R Sbjct: 150 GQMQAEYLNKLMPNGGNLVFAAGVYGASWTDRRKNGFDKTINE-NFKIVAEFQAKGSRDD 208 Query: 194 GLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGKSDVM--VVGFDGTPDGEKAV 249 M++ L P + AV A NDEMA+GA A+ AG++ VVG DGT + + Sbjct: 209 AKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAGRTAEFKAVVGVDGTEPALQDI 268 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G ++AT+ Q G K VE L G V +Y + L+ K Sbjct: 269 EGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYTLPFTLITK 314 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 11/291 (3%) Query: 15 LSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELA 73 + A + K I +T P+ EA K L++ D ++ K++A Sbjct: 23 MPAGDAVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVA 82 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 +V++L + LL++P +S + V+ A A IPV LDR + + DN L Sbjct: 83 DVENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQYTQFVGGDNKLI 142 Query: 134 GKIAGDYIAKKAGEGAK----VIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPA 187 G+ AG+Y + G K ++E+ G GT A +R +GF + N+L Q Sbjct: 143 GRAAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKEPGIKNLLDKQSG 202 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTP-DG 245 D+ + + N+M L + + V+ ND MA GA A + AG+ ++ +G D P +G Sbjct: 203 DWKQDQAYNIMATALRNNEKIDLVYGHNDPMAYGAYLAAKDAGREKEIKFIGIDALPNEG 262 Query: 246 EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 V++G+L AT GA+G+ A K LKGEKV+ +D V ++ Sbjct: 263 VTWVSNGELTATFLY--ATPGAEGLRQAVKFLKGEKVEKTVTLDTLKVTEE 311 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 131/285 (45%), Gaps = 4/285 (1%) Query: 10 VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNN 67 V+ + S A I + NP+ V+ G + +G+ + + ++ Sbjct: 63 VTGIGAQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADS 122 Query: 68 PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIA 127 +++ ++++ + ++++ DS+ + V+ A A + V+T+ A + + Sbjct: 123 VEEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRT-G 181 Query: 128 SDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQP 186 D G +A K G K I L+G AG S A ER G ++ + ++ASQ Sbjct: 182 VDYYESGYTMAKAVADKLGGKGKFIILEGPAGASNAIERLNGINTGLSEYEGIEIVASQT 241 Query: 187 ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGE 246 A+F R +G++V +NL+ + D+ AV A NDE ALGA++AL A SDV+V GFDG+ D Sbjct: 242 ANFKRTEGMSVTENLIQQYTDIDAVIACNDESALGAVQALTAANMSDVLVCGFDGSVDAT 301 Query: 247 KAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 AV +G + AT P G A K L + + Sbjct: 302 NAVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFP 346 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 94/274 (34%), Positives = 143/274 (52%), Gaps = 2/274 (0%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 + TI L V+ L FF +K + E G ++ +D+Q N + +++ ++DL R Sbjct: 26 AKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLITRQI 85 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 L+ P + A G VK A A IPVI +DR A + IASD+V G K +Y+ K Sbjct: 86 DALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTFIASDSVAGAKALAEYVGK 145 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLL 202 ++ LQG GT+ +R +GFQ+ + V+A QPA++ + KG V Q+LL Sbjct: 146 VTDGKGRIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKGFAVAQDLL 205 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQL 261 P++ F + D MALGA +A++ A S V+VVGFDG G KAV G L AT+ Q Sbjct: 206 QRDPNITVFFGRADAMALGAAQAVKVANLSQPVVVVGFDGDVAGLKAVASGVLQATMTQQ 265 Query: 262 PDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 ++G V +A + G+ V + ++ L K Sbjct: 266 TQKMGRMAVASALDLKAGKAVPKEQLLETVLTTK 299 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 4/279 (1%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQK-EADKLGYNLVVLDSQNNPAKELANVQDLT 79 A K I N+ F L G Q EA++ +V +D++N+ ++A V+DL Sbjct: 40 AGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLI 99 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGD 139 +G ++ P D A V A QA +PV+ ++R + + E +++ SD++ G I + Sbjct: 100 AQGVDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE-DAYVGSDSLQAGTIQME 158 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVM 198 +A K+ + G G +A R G +Q V + V+ + R KG +M Sbjct: 159 EVAAVLKGKGKIAIMNGQMGHTAQINRTLGNKQVVDQYPGMEVVIEGTGGWSREKGKELM 218 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV-GFDGTPDGEKAVNDGKLAAT 257 ++ + + AV A NDEMA+GA+ A + AG D +V G DGTPD ++ GKL + Sbjct: 219 ESWIESGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSKGKLTIS 278 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + Q G G+E A K+ KGE + + + + K+ Sbjct: 279 VFQDAKGQGQTGLEQAIKLAKGESAEKMTNIPYETITKR 317 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 165/301 (54%), Gaps = 16/301 (5%) Query: 3 MKKLATLVSAVALSATV---SANAMAKD-----TIALVVSTLNNPFFVSLKDGAQKEADK 54 M+K+ L++ +A++ + SANA K TI + + + P FV L++ + EA Sbjct: 1 MRKVTYLMTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKT 60 Query: 55 LG-YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 LG ++ D Q + K++A+++ V+G ++I P D+ A+ ++ A + I V+T+ Sbjct: 61 LGNVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTI 120 Query: 114 DRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 DR EV++++A+DN++G + G+ + K +GA +I LQGI G A +R +G Sbjct: 121 DRPVNGVPEVIANVAADNLIGAQRQGEAVEKLFPQGATIINLQGIPGDKTANDRSKGVHD 180 Query: 173 AVAAHK--FNVLASQPADFDRIKGLNVMQNLLT--AHPDVQAVFAQNDEMALGALRALQT 228 + H + +A Q A F+R +GL+V +NLLT A+P + A ND+ ALGA +A++ Sbjct: 181 TLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANP-PTVIVAGNDDSALGAAQAVEA 239 Query: 229 AG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 G K + + G+DG+ D KAV DG L T+ Q P + G + V+ ++ A Sbjct: 240 RGLKGKIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIRTGARPATVD 299 Query: 288 V 288 V Sbjct: 300 V 300 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTV 80 A K I + + + P+ + D + A ++ + + D+ + AK++A+V++ Sbjct: 42 GADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYIT 101 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY 140 + +L+I+P ++ + VK A IPV+ LDR+ I DNV G AG Y Sbjct: 102 QQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDAYTGFIGGDNVQIGTEAGKY 161 Query: 141 IAKK-AGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVM 198 +A+K G V+E++G+AG + ER +GF + A+ K V+A+ D+ R KG M Sbjct: 162 VAEKVLPNGGNVVEIKGLAGATPQAERNQGFATGIKANPKVKVVATASGDWLREKGQAQM 221 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTP---DGEKAVNDGKL 254 LL A+P + V+A ND MA GA A + G+ ++ +G D P G KAV G+L Sbjct: 222 DALLKANPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIGIDALPIPSGGIKAVEQGRL 281 Query: 255 AATIAQLPDQIGAKGVETADKVLKG-EKVQAKYPVDLKLVVK 295 AT + G + + A K+L ++ + +L+ K Sbjct: 282 TATFTYPTN--GKEAIAAAKKLLVDCGTIEKTQTLPTRLIDK 321 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 131/281 (46%), Gaps = 8/281 (2%) Query: 15 LSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELA 73 ++ SA I T + + ++ ++E Y L+ D++N+ ++++ Sbjct: 38 MAGCQSATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQIS 97 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 +Q L +G +L+++P + ++ + IPVI LDR+ ++I DNV Sbjct: 98 QIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETESYNAYIGGDNVEI 157 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G++AG +I +++E+ G+ +S A+ER G + + + V+ ++R Sbjct: 158 GRLAGVFIGNHLKGKGRIVEIWGLPSSSPAQERHRGLLEELRKYPGIQVVKELNGQWERD 217 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTP---DGEKA 248 V+ L DV VFA ND MALGA + G + + VG D P G +A Sbjct: 218 TVGRVVAAELNTLKDVDLVFAHNDVMALGAYAVCKQKGIEKKLDFVGIDALPGPNAGMQA 277 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 + DG L A+ G + +ETA ++L G+ V+ + ++ Sbjct: 278 ITDGILKASFLYP--TGGEEAIETATRILAGKSVKREQVLN 316 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 148/290 (51%), Gaps = 15/290 (5%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD--KLGYNLVVLD--SQNNPAKELANVQ 76 A K +ALV+ +L N FF+++++GA++ ++LV + + A ++ V+ Sbjct: 30 AETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRIVE 89 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT------KGEVVSHIASDN 130 + V +++ P DS A+ VK A A I V+ +D + KG V + DN Sbjct: 90 QMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDN 149 Query: 131 VLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFD 190 G ++ GDY+AK+ G V ++G+ T+ A++R GFQ A+ A V++ Q +++ Sbjct: 150 RKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAGAKVVSVQSGEWE 209 Query: 191 RIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAV 249 KG V +L +P+++A+ ND MA+GA+ A++ AG+ V VVG+D + + Sbjct: 210 IDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINAIKPML 269 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVL----KGEKVQAKYPVDLKLVVK 295 DG++ AT Q + G++TA K L K + + LV K Sbjct: 270 KDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 319 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 5/284 (1%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD---KLGYNLVVLDSQNNPAKELA 73 A + ++ +V ++ F +S+ DGA+ A + + ++ + +++ Sbjct: 46 AQAADPSVKTYNFVFIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQ 105 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 V+ G +LI P DS + A++ AN A IP+ T + +A G+V++ I DN Sbjct: 106 LVEQAITDGADAILITPADSTGIVPAIEKANAAGIPIATPNTKAYGGDVLTWIGVDNYTV 165 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G G + + KV+ ++G AG S + ER +G+ A + +L SQPADF+R Sbjct: 166 GYELGTALCEALEGTGKVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNRE 225 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKAVND 251 KG+ VM+N L +P++ V + N +M +GA+ A + G+ MV V FD D A++ Sbjct: 226 KGMTVMENFLQRYPEIDGVGSINKDMTMGAIEACKAVGRDKEMVQVTFDVDNDCLDAIDA 285 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + T AQ A + G KV + + + LV K Sbjct: 286 GDILITGAQEEKSQIANAIYACLLACNGYKVAPEQYIPMTLVTK 329 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 156/308 (50%), Gaps = 19/308 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MK++ L + +A++ + SA A ++I + +S ++ F L++ L N+ + Sbjct: 1 MKRIL-LAAVMAINFSCSAGA---ESIGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQM 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 D+QN+ A++ + VQ+ G +++NP D+DA K+A A +P++ ++RQ + Sbjct: 57 EDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVD 116 Query: 122 VV----SHIASDNVLGGKIAGDYIAKKA-----GEGAKVIELQGIAGTSAARERGEGFQQ 172 + + IASD + G + + + G+ A V+ + G A+R+R + Sbjct: 117 RLPETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHD 176 Query: 173 AVAAHK---FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 +A + V+ Q A++ R + +N+M N L+A AV A DEMA+GA++A+++A Sbjct: 177 VIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSAGIQFDAVIANADEMAIGAIQAMRSA 236 Query: 230 GK--SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 G D +V G DG DG + + G L T+ Q GA ++TA + +G+K Sbjct: 237 GLPVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALDTALMLARGKKTDRTIW 296 Query: 288 VDLKLVVK 295 V +L+ Sbjct: 297 VPFQLITP 304 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 10/300 (3%) Query: 3 MKK-LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLV 60 MKK L L+ + T + + I + + ++ + + +EA G + Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + +++N ++ ++ R +L++ P ++ AV V+ A IPV+ +DR+ Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKILSD 119 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA-HKF 179 + + +DN GK G YI + G K++E+ G+ G++ A ER G A+ A Sbjct: 120 RYTAFVGADNCEIGKDVGQYIVNRLGGKGKILEITGLEGSTPAMERHRGLADALKAEPGI 179 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGA-LRALQTAGKSDVMVVG 238 + AS + + M ++L + + VFAQND MA+GA L A Q + +++ VG Sbjct: 180 EITASVDGAWLQSVAGEKMDSILQDNKGINLVFAQNDRMAVGAYLSARQRQLEKEMLFVG 239 Query: 239 FDGTPD---GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 D P G + V +G L AT G K ++ A +L+ + + LV K Sbjct: 240 IDALPGKGYGVEQVLEGVLDATFIYP--TGGDKVMQVAMDILEKRPYERDTKLSTALVDK 297 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 140/273 (51%), Gaps = 8/273 (2%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKIL 86 TI + + + F+ S++ +++A + G+ L V D+ + K+L VQD + + Sbjct: 59 KTIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKKVDAI 118 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA- 145 +I PT+S + +++A +A IPV T+D A+ G+ V+H+A+DN GG++A +Y+ Sbjct: 119 VIAPTNSAGSKSMIELAEKAGIPVFTMDI-ASDGKPVTHVATDNKKGGQLAAEYVVNNIL 177 Query: 146 -GEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLL 202 + V + + + +R GF + + V+ Q D+ K +VMQN+L Sbjct: 178 TEKKGNVAVIT-YSEIESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAADVMQNML 236 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND-GKLAATIAQL 261 + ++ VF D A+GAL ++ A + ++G+DG P+G + G A +AQ Sbjct: 237 LKNDNIDVVFCVGDPAAIGALSSITAANAAT-KIIGYDGNPEGVAEIKKGGNWVADVAQD 295 Query: 262 PDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P IG +E K L+GEKV ++ + ++ Sbjct: 296 PAGIGKTTLEAIKKHLEGEKVDSEILIAPYIID 328 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 81/295 (27%), Positives = 143/295 (48%), Gaps = 9/295 (3%) Query: 7 ATLVSAVALSATVSAN----AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 AT+V+ L + + + T+NNP+FV++ + ++ G L+ Sbjct: 4 ATIVACTTLFIAIGIHEKKDTRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITR 63 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE- 121 D + K+ ++D+ G +L + P D + V A+++ + +IPV +D + + E Sbjct: 64 DPLQDQKKQNEQIKDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEA 123 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FN 180 VVS I SDN G + KK A +I + ++ ER +GF+ + H + Sbjct: 124 VVSTIVSDNYDAGVQCAKDMMKK-KTSANIIIVN-QKALNSINERVKGFRDTIKGHPQYK 181 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGF 239 ++ + + + + VM+ ++ + V ND +ALG + A+Q K+D VMV G Sbjct: 182 IVEEKESAAEFEIAMKVMEKIIYEKKNYDVVMGGNDPIALGCIAAMQMTDKTDQVMVYGV 241 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 DG+PDG+ + G L T AQ P +IG K V+TA L GE V+ + ++L+ Sbjct: 242 DGSPDGKAMIKAGFLEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVTIPVELIT 296 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 4/266 (1%) Query: 34 STLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS 93 ++ F + LK+ ++A G ++ LD++ + ++ + + +++ D Sbjct: 76 HNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIVLLAMDG 135 Query: 94 DAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIE 153 ++ V+ A +A IPV+ ++R +V+ + SD+ G++ G+++A AKV+ Sbjct: 136 TSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL-SDDREAGRMQGEFMASHLPPNAKVVY 194 Query: 154 LQGIAGTSAARERGEGFQQAV--AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 L G + S A +R EGF++A +LAS + + +G+ M L+ P++ V Sbjct: 195 LMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLWLSFFPEINGV 254 Query: 212 FAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGV 270 A NDEMALGA++AL+ A + + +V G D TP G AV G+L+ T+ Q + A V Sbjct: 255 VAANDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAGELSQTVKQDAEGQAAGAV 314 Query: 271 ETADKVLKGEKVQAKYPVDLKLVVKQ 296 L G+ + + ++ Sbjct: 315 TLVQGFLSGKAPTESLDIPFTSITRE 340 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 6/293 (2%) Query: 7 ATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN 66 ++ + S + + +K TI + T+NNP+F + + + + G L DS Sbjct: 27 IVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSGM 86 Query: 67 NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS-H 125 + + V+ +LIN D +G++++ A +A IPVI +D V Sbjct: 87 DAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNRSFVDGT 146 Query: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV--LA 183 + S+N G+ + K+ + K++ L + +A +R +GF++ + + + Sbjct: 147 VVSNNYQAGEQCAKDLMKR-RKKGKILFLV-QSENKSAIDRIKGFKETLEKAGWKYENVG 204 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGT 242 +++ +L D+ V A ND A+GA+ AL SDV+V G DG+ Sbjct: 205 ELECQGQLELSQPLVEKVLNKTKDIDVVMALNDPSAMGAMAALDAEHMLSDVLVYGADGS 264 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P+ + + + K+AAT AQ P G K VE K+L G+K + + V + L+ K Sbjct: 265 PEAKTMIYENKMAATSAQSPRTTGKKTVEMLYKILDGKKTEKQCIVPVSLITK 317 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 139/277 (50%), Gaps = 11/277 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD--SQNNPAKELANVQDLTVRGTKI 85 IA+V NP++ +L+DGA E K G + V S+ + E A + L +G Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-------VVSHIASDNVLGGKIAG 138 + P ++ V + Q IP++ LD Q S I SDN+ G+ AG Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVM 198 + + K G +V LQGIAG R +GF + VA K +++A+QPAD+D+ KG V Sbjct: 141 EGLLKLMGGKGEVAILQGIAGEQNGINRQKGFTEKVAG-KLDIVATQPADYDQAKGQTVT 199 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAAT 257 + +L AHP + +FA ND M LGA +A++ AG + V ++ DG +AV G L+ T Sbjct: 200 EAILKAHPKITGIFAANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAVKAGTLSGT 259 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 I+Q P G V+ ++ +KV ++ + L+ Sbjct: 260 ISQYPYAEGQLAVQACIDLVAKKKVPSRIVAPIALID 296 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 8/300 (2%) Query: 2 NMKKLATLVSAVALSATVS----ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 M L + + S + + T+NNPFF + + +K + G Sbjct: 12 KMMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGD 71 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 L+ LD + K+ + DL + + +NP D+ + +K A +A IPVI +D Sbjct: 72 VLITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPI 131 Query: 118 TKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 +V IAS+N G + + K + AK+I L+ A +A ER +GF +A+ Sbjct: 132 YDESLVNCSIASNNYDAGVLCAKDMMSK-RDHAKIILLEH-ATAKSAVERIQGFLDTIAS 189 Query: 177 H-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 + + V+ D + M+ +L PDV V A ND ALGAL A+++ +V+ Sbjct: 190 NANYQVINRADCDGQIEIAMPTMKQMLKETPDVDVVMALNDRSALGALAAIESMEIDNVL 249 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V G DG+PD ++ +N G + AT AQ P ++G + A +L+ +K++ K V ++L+ + Sbjct: 250 VYGVDGSPDVKELINTGLIQATAAQSPVKMGQLAYQKAKALLENKKIEKKIEVPVELISR 309 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 153/306 (50%), Gaps = 25/306 (8%) Query: 3 MKKLATLVSAVAL---------------SATVSANAMAKDTIALVVSTLNNPFFVSLKDG 47 MKK+ L + + L + + AK I +++ +FV++++G Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPVG-YFVAVREG 59 Query: 48 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAN 107 K A + + D+ + +K+L+ V+DL + ++ I DS+A AV+MAN+AN Sbjct: 60 IDKAAAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEAN 119 Query: 108 IPVITLDRQATKGE------VVSHIASDNVLGGKIAGDYIAKKAGE-GAKVIELQGIAGT 160 IP++ E +++++ + V GK+ G+ GE G KV+ ++G GT Sbjct: 120 IPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVVLIEGRPGT 179 Query: 161 SAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMA 219 S R +G +A+ +K F V+ +Q +++++ + L ++++L+ + + + AQ+D A Sbjct: 180 SPQINRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQTIDVIIAQDDNSA 239 Query: 220 LGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 278 +GA AL+ A K ++V+G G+ +G AV G + T + G + A K L Sbjct: 240 IGAGMALKEANLKDKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAITAAVKYLN 299 Query: 279 GEKVQA 284 GEKV+ Sbjct: 300 GEKVEP 305 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 147/305 (48%), Gaps = 11/305 (3%) Query: 1 MNMKKLAT-----LVSAVALSATVSANAMAKDT-IALVVSTLNNPFFVSLKDGAQK-EAD 53 MN K A + +AL A A + T I + + ++ F V++KD A Sbjct: 41 MNKPKKAVQGVLFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAK 100 Query: 54 KLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 + L+ +D++ + K+L +Q+ ++ +++ P ++DA +A I ++ L Sbjct: 101 QDNLELIFVDAKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYL 160 Query: 114 DRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 +R+ T + V+++ S+ + G+ Y A + +G + + G+ AA R +G + Sbjct: 161 NRRPTYLPDGVAYVGSEELRFGEEQAKYAASHS-DGGNIGIIMGMMTVEAAILRTQGVED 219 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 +N++ Q A + R +G+ VM+N + + + + + ND+MALGA++AL+ AGK Sbjct: 220 FFKEKPEYNIIRKQTALWQRSQGMVVMENWINSGDKLDIIISNNDDMALGAIQALRAAGK 279 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 D +V+G D TPDG A+ +G L AT+ Q ++ A + + Sbjct: 280 LDDTIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAIDAALSGINKTPRDKITWIPA 339 Query: 291 KLVVK 295 +LV K Sbjct: 340 ELVTK 344 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 94/316 (29%), Positives = 154/316 (48%), Gaps = 24/316 (7%) Query: 3 MKKLATLVSAVALSATVSANAMA------------KDTIALVVSTLNNPFFVSLKDGAQK 50 MKKL + +A S+ + K + + V TL NPFFV L + A+ Sbjct: 1 MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 EA+K GY +++L S ++ K+ ++D + +++ P ++ A+G +K AN A IPV Sbjct: 61 EAEKHGYEVIIL-SGDDAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEIPV 119 Query: 111 ITLDRQ--ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 168 T D +VV ++ +DN GGK+A + G KV+ L S R + Sbjct: 120 FTADTGCTDPGAKVVCNVMTDNFGGGKLAAQAMIDVLPNGGKVLILDFKKAQS-CLLRVD 178 Query: 169 GFQQAVAAH-------KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 GF++ +A H K ++A ++ L A PD++ VFA ND ALG Sbjct: 179 GFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKGVFAINDLSALG 238 Query: 222 ALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE 280 A+ AL+ A K DV ++GFDG G++A+ G++ A Q P +IG V+ G+ Sbjct: 239 AVVALKKANKLQDVKIIGFDGLRIGKEAILRGEIHADPIQFPSEIGKLTVQQILAYKNGD 298 Query: 281 KVQAKYPVDLKLVVKQ 296 +V+ + + KL ++ Sbjct: 299 EVKPEILIATKLYYQE 314 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 151/303 (49%), Gaps = 12/303 (3%) Query: 3 MKKLATLVSAVAL---SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL---- 55 MKK+ L+ A L + + + + L + + + + +L A+ +A L Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 + + + +NP+ ++ NV+DL +G +++ P +SDA+ +A IP++ +DR Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 116 QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 + T + DN G AG+Y ++ G KV+E+ G S ++R +GF++A+ Sbjct: 121 ELTNDAATVVVKGDNYGAGVNAGEYFMEQLGGNGKVVEIAG-PSNSVTQQRSDGFREAIE 179 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV- 234 ++ASQ +F L VM+N+LT+ P++ AV+ Q+D MALG L+A+ A ++D+ Sbjct: 180 GSDIEIVASQSGEFSTETSLQVMENILTSQPEIDAVYTQDDGMALGVLQAINEANRTDIQ 239 Query: 235 MVVGFDGTPDGEKAVN-DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ-AKYPVDLKL 292 + G G+ D + + DG + AT P + +GV + GE A+ V Sbjct: 240 FITGVAGSKDVYEIIMDDGLITATFLYSP-LMVKEGVIIGADLANGEDPDSAEVVVPATP 298 Query: 293 VVK 295 V K Sbjct: 299 VTK 301 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 71/276 (25%), Positives = 140/276 (50%), Gaps = 11/276 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQ---KEADKLGYNLVV----LDSQNNPAKELANVQDLTV 80 + V N ++ +LK+G + ++ + GYN+ + + + +L+ V+D+ Sbjct: 72 KLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQGQLSIVEDMIN 131 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY 140 + LL++P + V+ A + NIPVI ++ K + + ++ G++A ++ Sbjct: 132 KKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGIIKNADI-FVGPKAIMNGELAAEW 190 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVM 198 I+KK G +V + G+ AAR+R GF+ + ++ ++ Q AD+DR K ++ Sbjct: 191 ISKKIGGEGEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVKIVEKQNADWDRAKAKDLA 250 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 + + +P+++A+F ND MALG A+ A K D++VVG DG + +++ G++ AT+ Sbjct: 251 EIWIKKYPNLKAIFCNNDVMALGVQEAV-NASKRDILVVGVDGIKEAYESIRKGEMDATV 309 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P G VE A + L G+++ L+ Sbjct: 310 DSFPLYKGQIAVEMALRSLGGQQLPRVIWTPQALID 345 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 72/293 (24%), Positives = 145/293 (49%), Gaps = 11/293 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKD--TIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 M + + L+++VAL+ +++ A A++ TI V+ ++P + + GA+K AD+ G Sbjct: 6 MGRRIVLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCK 65 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 ++ D +++P+ + +++ + +G +++ PT SD + AVK N A IP++ DR+ Sbjct: 66 VIFADGKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQ 125 Query: 119 KG----EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV 174 + + ++ D V G I G+ K G ++ ++G G + +RG F + + Sbjct: 126 THGQPIKWEALVSWDMVKSGTIGGEQTVKAIGGKGNIVVVEGTPGAGSTIDRGNAFYEVI 185 Query: 175 AAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGK 231 + +LA PA+F+R KG V +N+L ++ A++ DEM G L+A++ AG+ Sbjct: 186 EKYPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAIKAAGR 245 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ 283 + ++ DG + + ++ PD A V ++ G Sbjct: 246 LGEFKIISVDGQKEAMDLLRAREIDYEAIFHPDDQ-AVAVRILCDIVNGRTPD 297 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 134/298 (44%), Gaps = 8/298 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKE-ADKLGYNLVV 61 M+ + + L A + I T ++ + ++ DG Q+E A L+ Sbjct: 1 MRLALIALLLLTLFAGCAGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIF 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 D+ N A ++ +++L G +L+++P +SD + ++ A + +PV+ +DR+ + Sbjct: 61 RDAHANSAVQVKQIEELLRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSPY 120 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FN 180 +++ DN GK G+Y A G K+IE+ G+ +S A +R G A+A Sbjct: 121 YTAYVGGDNYQVGKTVGEYAAALLGGNGKMIEITGLPRSSPASDRHRGLVDALATRPSIR 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGF 239 +A+ + + + ++ +L PD+ +FAQN+ MA+GA + V+G Sbjct: 181 RVATLNGQWQKDIAKSELRKVLPRFPDLDLIFAQNEVMAMGAREVCNDIFPDRKIRVIGV 240 Query: 240 DGTPDG---EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 DG P + V DG + AT G + A +L+ + Q + + ++ Sbjct: 241 DGLPGQFGDIQMVYDGHITATALYP--TGGEEAARVAMNILQKQPYQKENLLQTAIID 296 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 137/302 (45%), Gaps = 9/302 (2%) Query: 3 MKKLATLVSA--VALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 MKK T + A V LS+ + A K I + + + F+ +++G ++ + G +L Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 60 VVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 ++ ++ +Q T G ++I PTD + V+ A + I V+ +D Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + +DN G++A +A+ G+ +V+ L+ +AG+++ +R GF ++A+ Sbjct: 121 DGSGHLQFVTTDNHASGQLAARQLAELMGQRGRVVLLRTVAGSASTDDRARGFIDYLSAN 180 Query: 178 --KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 +++A K + LL D A+FA N+ G LRAL+ AG + Sbjct: 181 APAISIVADVYGGGSAGKARHSASALLAKSADFDAIFAVNESATDGMLRALREAGLAGRK 240 Query: 236 -VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV-QAKYPVDLKLV 293 +GFD TP + + ++ I Q PD++G ++ L+ + ++ LV Sbjct: 241 RFIGFDSTPFLLEGLEKKEIDGLIVQDPDRMGYLAIKAVVAALRNRPIKESVIHTGTTLV 300 Query: 294 VK 295 + Sbjct: 301 TR 302 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 85/294 (28%), Positives = 152/294 (51%), Gaps = 4/294 (1%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV-- 60 M KL + + ++ A +TIA+ NP+F +++ GA+ A +G +V Sbjct: 1 MSKLKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHY 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + ++ ++L+ ++D+ V+ ++ P D A+ V+ N A IPV+ + ++ G Sbjct: 61 IPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDRSAGG 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 + ++ + +D+ G G Y+ K+ G V+ L+G+ G+ +R GF A+ K Sbjct: 121 KFLAFVGADDYSLGLETGRYLLKEMGGKGNVVILEGVKGSLTNVDRVRGFNDALKEFKDV 180 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239 +LASQPA++ R++GL VM+NL+ +HP + V A ND MA+GA+ AL A + VVG Sbjct: 181 KLLASQPANYQRLQGLQVMENLMQSHPQIDGVLAANDAMAIGAIEALDGANRKA-KVVGI 239 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +GT + A+ GKL A+ G G A + L+ E + + + +V Sbjct: 240 NGTKEAVDAIKSGKLLASGDYNGFLQGCIGTMVAIRALRKETIVNEVVLKPTVV 293 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 92/297 (30%), Positives = 152/297 (51%), Gaps = 4/297 (1%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M K++ ++ +A + + AMA+ TIA + + N + + GA+K K G + Sbjct: 1 MITKRMLGRLTIAMATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFI 60 Query: 61 VLDSQ-NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 L ++ +K+LA V+D+ R + I P DS + A+ A A I V+ +D + Sbjct: 61 ELAAEKGELSKQLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISG 120 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 ++ S++A+DN+ + GD+ A++ +G VI + G G S +ER +GF + A + Sbjct: 121 AKITSYVATDNIKAAMVQGDWTAEQIKDGDTVIYVTGDQGQSTGQERKKGFLDGLNAKRK 180 Query: 180 NV-LASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DVMV 236 NV + +D+ N ++ L A+P + + D ALGA AL AGK DV + Sbjct: 181 NVKVVEVATTWDQTMAQNGVETALRANPTAKVIACAWDGGALGAKAALMAAGKKAGDVKI 240 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 GFDG+P G + G +A AQ+ +IG GVETA +G+KV+A+ LV Sbjct: 241 AGFDGSPGGLDMMKQGWQSANAAQMLAKIGQVGVETAIAAAEGKKVEARIDTGSFLV 297 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 9/283 (3%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 K I ST + + V+ + K A+ GY L++ ++ +N K++ +V+DL + Sbjct: 63 GGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDVEDLIAQ 122 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG----EVVSHIASDNVLGGKIA 137 +++I P D++AV A + A IPVI +D Q G + ++ I SD G+ Sbjct: 123 KCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIRSDQYQQGQGC 182 Query: 138 GDYIAKKAGEG-AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 196 ++ G+ V+E+ G G S A+ R GF + VA H + Q ++ R Sbjct: 183 AEWTVGHVGDKDTTVLEITGNPGQSDAQNRSRGFNEYVADHSNIKVIQQNGEWSRATAQE 242 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGK 253 V+QN+ + ++ +DEMALGAL L+ AG DV +V DG + A+ + Sbjct: 243 VVQNVAQSGQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVDGQKEALDAIKADE 302 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + A I P G + +K G++++ +Y V + + Sbjct: 303 IGAIITCTPKG-GDVLFDCINKYFAGDELEEEYFVHQSTITTE 344 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNL 59 M MK+ ++ L + S N + K I + + + + L + + L Sbjct: 1 MQMKQWLYILIFTLLFSACSDNNVKKYVIGVSQCSEDI-WRDKLNNELVMSTYQHDNVTL 59 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + +N + ++ G +L+++P + + + A A IPVI DR+ Sbjct: 60 KFASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDS 119 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-K 178 + + I +DN G G++I ++ + E+ G+ +S A ER GF A+ + Sbjct: 120 KKYTAFIGADNYEAGYEIGNFIGQQLDGKGNIAEICGLQASSPAIERNRGFMDALKDYSG 179 Query: 179 FNVLASQPADFDRIKGLNVMQNLL-TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 V+A + D+ + G+ M ++L A +Q VFAQND MALGAL++++ + +V Sbjct: 180 IKVIARKHGDWVKESGVMAMDSVLSQAKEPIQYVFAQNDRMALGALQSIKKHKVKGIRIV 239 Query: 238 GFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G D P G + V DG L A+ G ++ A +L+ + + + LV Sbjct: 240 GIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQLALNILEKKPYKRDNYLKGALVT 297 Query: 295 K 295 K Sbjct: 298 K 298 >UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STD2_9RHIZ Length = 329 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 159/299 (53%), Gaps = 11/299 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 LA +A A VSA+A +A +V L+NPFF +++ G +++A G N+ V + Sbjct: 7 LALSAGLLATIAPVSAHAEDAAKVAAIVKGLDNPFFQTMQKGIEEQAKASGVNVSVQAAA 66 Query: 66 N--NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-- 121 N + + + + ++ L+NP + A+ Q P++ +D + Sbjct: 67 NMGDATGQADRLTAMAMQDFDCYLVNPISVSNLVQALVPVAQKKKPIVNIDSTIDAEQAK 126 Query: 122 -----VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 V ++I +DNV G +AG+ + K +G+KV + GI G + R +GF+QAV Sbjct: 127 AAGFAVSTYIGTDNVAAGALAGEEMLKLVPKGSKVALIAGIVGDVGSNARIKGFKQAVEG 186 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV 236 K V+ AD+DR K L ++L AHPD+ FA ND MALG RA+QT+GK DV V Sbjct: 187 -KLEVVVMVSADWDREKALTAATDILAAHPDLAGFFAANDIMALGVERAVQTSGK-DVKV 244 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 +G DG D K++ G+L+AT+AQ P +GA G+E KG+++ A P + L+ K Sbjct: 245 IGLDGIVDALKSIAAGELSATVAQYPYVVGAMGLEACAVAAKGKELPANVPAPVLLINK 303 >UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR03_9FIRM Length = 332 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 4/275 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 K ++NPF+ +LKD Q ++ G L++ D + ++ +Q+L Sbjct: 47 QEKKVFGFCGIDMSNPFYATLKDSVQSALEEQGDKLLIKDPAGDAERQNTQIQELIEEDV 106 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQA-TKGEVVSHIASDNVLGGKIAGDYIA 142 + + P D + A+ +A+IPVI LD + G+V + + SDN G + G+ + Sbjct: 107 DAVFLCPVDWKKIEPALDALEEADIPVINLDTKVYESGKVAAFVGSDNRNAGYVCGEDLV 166 Query: 143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLL 202 ++ +G +V+ ++ + S ER GF++AV+ F V+ D + +L Sbjct: 167 ERKPDGGQVVIVENLNVNSVC-ERITGFEEAVSKGAFEVVKRIQTGNDVSGLKQQVAQVL 225 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND--GKLAATIAQ 260 +PD+ A+ +D+MA A+ AG+ V V DG+P +KA+ + G + AQ Sbjct: 226 AQNPDLDAIMCGDDQMAEQVREAITEAGQEKVYVYSVDGSPASKKALVEHTGGMMGIGAQ 285 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P +G K V+ A+ VL GE + + + + + Sbjct: 286 SPINLGKKAVKIANAVLNGEDYEKETYEETFFINR 320 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 145/301 (48%), Gaps = 9/301 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVV 61 MKK + L T A I +++ + + L+D + +K + + Sbjct: 1 MKKTLLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKL 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 DS ++P ++ VQ+ + LL+ PTD V +A +A IP+I ++R+ Sbjct: 61 ADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEH 120 Query: 122 ---VVSHIASDNVLGGKIAGDYIAKKA-GEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 V S + SD + GG+I G++I G+ A+ + L G G A +R +G ++ A H Sbjct: 121 MQYVTSFVGSDEIEGGRIQGNFIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQH 180 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DV 234 K V++ Q ++R +GL + +N+L + + + + NDEMA+GA+ A + G D+ Sbjct: 181 KNIKVVSKQEGRWERDRGLAIAENVLAGNKGINVIVSNNDEMAIGAILATRKLGIKDEDI 240 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +VG D TPD + + G L AT+ Q G G E A KGEKV + V +LV Sbjct: 241 TIVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKGEKVPSVKWVPFELVT 299 Query: 295 K 295 Sbjct: 300 P 300 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 130/300 (43%), Gaps = 8/300 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVS-LKDGAQKEADKL-GYNLV 60 MK++ ++ ++ S + A + + + VS + + + ++ + +L+ Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCCGGVWREKVNNEMRQAQYQYKNVDLL 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 ++N+ + + + R ++++ P + + V A++ A +A+IPVI DR+ Sbjct: 61 FTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKTP 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + I DNV G+ ++A K V+E+ G+ S ER GF + + + Sbjct: 121 HYTASIGGDNVEAGREVARFLASKLDGKGTVVEITGLKDASPVIERHRGFHEVMKNYPGI 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGF 239 + + +++ + +M+ L VF +D A+GA + G +++VG Sbjct: 181 KVVTLESNWKLERAQELMKQYLDKGGHADGVFGHSDLGAIGAFLEAERRGIDKQMLIVGI 240 Query: 240 DGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 DG P +G V G+ AA+ G K +E A +L+G+ + + L + Sbjct: 241 DGLPGEWEGVDRVKRGQFAASYVYP--TQGEKIMELAMNILQGKPYKKDNVMKSFLATPE 298 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 145/292 (49%), Gaps = 13/292 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK+ + + L+ TVS AK T+ + + + + + + EA+K G +L + Sbjct: 1 MKRSLLVAAFALLACTVS---QAKLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFV 57 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA--TKG 120 D+Q+N ++ ++ +++ P ++ A A IPVI +DR+ Sbjct: 58 DAQSNVDNQMKALRSFIADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKIVADPS 117 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--- 177 + I SD G++A ++I A + K++ELQG G+SAA ER F +A H Sbjct: 118 LYATFIGSDFFKEGQMAAEWILAHADQKRKIVELQGEPGSSAANERQRAFASTMATHTSD 177 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGKS---D 233 F ++A + A+F R +G M LLT H D++ VFA ND+MALGA+ A++ G+S D Sbjct: 178 GFRIVARKVANFRRDQGRQAMAELLTTHGSDIEIVFAHNDDMALGAIEAIEAVGRSPGRD 237 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 +MVV D +AV GKL T+ P G K +E ++ G V + Sbjct: 238 IMVVSIDAIKTAVEAVASGKLNCTVECNP-LFGPKVIEAVVRLTSGGTVMKE 288 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 150/298 (50%), Gaps = 6/298 (2%) Query: 3 MKKLATLVSAVALSA-TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 MK LV+A S + A+A I L V L FF +K G +K A + G +VV Sbjct: 1 MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 +D++N+ +++ VQDL ++ + P + A ++A +A IPVI +DR Sbjct: 61 VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FN 180 + IA ++V +I +KAG K+ + G GT+ +R G ++A+ +K Sbjct: 121 GDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKRAIDENKGVE 180 Query: 181 VLASQPAD-FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVG 238 ++ Q ++ + +G ++ QN+L A+PD+ +F Q D +A+GA +A+ A SD V++ G Sbjct: 181 LIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGG 240 Query: 239 FDGTPDGEKAVN--DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +DG + + G AT Q ++G VE+A V GEKV+ + + L Sbjct: 241 YDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTT 298 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 80/300 (26%), Positives = 144/300 (48%), Gaps = 9/300 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG--YNLV 60 M K + SA+ + A +A A ++ + V +L N +FV+L A+ +A ++ ++ Sbjct: 23 MIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVI 82 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 +DS + K+ + + G ++L+ D A+ A+K A A I V+ D A Sbjct: 83 TVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGA 142 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KF 179 + + + ++NV G+IA YI K G I +Q S+ +R G ++++A + K Sbjct: 143 D--ATVQTNNVQAGEIACQYIVDKLGAAGGQIIIQNGPQISSIIDRVSGCRKSLANNPKI 200 Query: 180 NVL-ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 +L Q R +G+ +MQ LT H + AVF D A G+ A Q G+++ + Sbjct: 201 TILSDDQNGKCSRDEGMKIMQGHLTRHRKIDAVFTVCDPQATGSDLAAQQFGRNEFFIAS 260 Query: 239 FDGTPDGEKAVNDG--KLAATIAQLPDQIGAKGVETADKVLKGEKVQ-AKYPVDLKLVVK 295 DG PD EKA G ++ A+ +Q P + + V+ +++ G+K + L+ K Sbjct: 261 VDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKKPDNPMILMPSTLLTK 320 >UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU6_PAESJ Length = 330 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 127/274 (46%), Gaps = 6/274 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKILL 87 + L+ +NP++ ++ GA++ A + G L L ++ + + + ++ ++ Sbjct: 50 LVLISQEYDNPYWRLVQQGAREAAQQKGIELEYLGPARADVKEHIKILEMAIASKVDGII 109 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 + + + A + IP+IT+D A + V+++ +DN G +AG + K+ Sbjct: 110 TQGLEENEFTPIINEAARMGIPIITVDSDAPHSKRVAYVGTDNYAAGYMAGRELIAKSAG 169 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP 206 A+V + G S ++R GF+ AV + +++ ++ RI+ L +P Sbjct: 170 RAEVALITGSFTASNQKDRVRGFKDAVKTYPGIHIIDIAESNISRIQSAASAYTLAQKYP 229 Query: 207 DVQAVFAQNDEMALGALRALQTAG----KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 ++ + LG + L+ G K+ + ++ FD P+ +N G + +TI Q P Sbjct: 230 EIDTFVGTSALDGLGIAQMLKEMGSETLKTPIRIIAFDDLPETLTLINQGVIESTIVQQP 289 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +G + V LKGEK+ Y D+K++ ++ Sbjct: 290 FIMGRESVNLLMDYLKGEKIVTVYNTDVKVIHRE 323 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 125/272 (45%), Gaps = 2/272 (0%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QNNPAKELANVQDLTVRGTKI 85 + L+ +NP++ ++ GA++ N+ + + + +++ ++ Sbjct: 53 PHVILISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPLRTSVDEQVKLLEKAIASRVDG 112 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++ +A + A NIPVIT+D A K ++++ ++N G++ G + + Sbjct: 113 IIVQNLKDEAFIPLIDKAISRNIPVITIDADAPKSRRIAYVGTNNFEAGQLLGKAVVSRV 172 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA 204 ++ + G + R R +GF +A H V++ ++ RI+ + +L Sbjct: 173 EGERELGVMIGTDTSENQRLRLQGFLSVIAEHPRLKVVSVASSNISRIQASIQAEQMLRK 232 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 HP + + + A+G A + + D+ + GFD + +A+ G + AT+ Q P Sbjct: 233 HPHISVMVGTSALDAIGIRMATKNLHRQDIQIFGFDDVEETIEAIQQGDIVATVVQKPYD 292 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +G V+ + L G+++Q ++ ++++ +Q Sbjct: 293 MGYSAVKLMVEHLSGKQIQKEHFTAIEVIDRQ 324 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 77/275 (28%), Positives = 138/275 (50%), Gaps = 5/275 (1%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 ++ T NN F+ + D + + G LV D+ + K++ + + K Sbjct: 42 SRKKFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKVK 101 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS-HIASDNVLGGKIAGDYIAK 143 + INP D + A+ A A IPVI +D ++V+ + SDN G Y+ K Sbjct: 102 AIFINPVDWKQIKPALIAAKNAGIPVIVVDTPVYDDKLVACTVISDNYDAGVQCAKYLMK 161 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLL 202 + A ++ ++ + +R +GF + A K + ++A+ ++ K ++++ +L+ Sbjct: 162 -SKSKANIMLIEHSK-AKSGIDRIKGFVDTIGASKQYKIVAAGDSEGQLDKTMSLVDDLI 219 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQL 261 H +V A+ A ND ALGAL AL+ G VMV G DG+P+ + ++DG + AT AQ Sbjct: 220 KKHTNVDAIMALNDPSALGALAALKENGLLGKVMVFGVDGSPEAKTMIHDGFMTATSAQF 279 Query: 262 PDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 P++IG E A +LKG++++ V + L+ K+ Sbjct: 280 PNKIGHIAAEKAYDILKGKRLKRDVIVPISLISKE 314 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 132/279 (47%), Gaps = 6/279 (2%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 N+ I T NN F+ + + + + G L+ LDS + K+ + L + Sbjct: 39 NSTEPRKIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQ 98 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH-IASDNVLGGKIAGDY 140 ++I P D + + +++K A + IPVI +D + + +++ I SDN G Sbjct: 99 QVDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNKNITYSIVSDNYDAGVQCAKD 158 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQ 199 + +K + A ++ LQ + T + R +GF+ + ++ + V+ D + M+ Sbjct: 159 MMRKL-DHANIVLLQH-STTRSGYLRIKGFEDTIQSNENYKVVKRMECDGQLEVAMPKME 216 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATI 258 + + + V ND A+GA+ AL + D V G DGTP+ ++ V +GK+AAT+ Sbjct: 217 SFIEEGIEFDVVMCLNDPSAMGAMAALSSNNILKDKYVYGIDGTPEAKEMVVEGKMAATV 276 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPV-DLKLVVKQ 296 AQ P G K E K+ E ++ K + ++++ K+ Sbjct: 277 AQSPKTFGKKAGEVIYKLFSQETIKNKNEMSPVQIITKE 315 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 4/283 (1%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELA 73 +A A A+ IA++ +L ++ ++ GAQ GY + + + ++ Sbjct: 52 AAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVK 111 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 V+D RG ++I+P + D + ++ A A IPVI +D + S +++++ Sbjct: 112 LVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPRSTVSTNDEAA 171 Query: 134 GKIAGDYIAKKAGE-GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 GK A + + + AG+ G + + G R +GF + + + ++ + DR Sbjct: 172 GKFAAEKLKELAGDAGGTFAIVSAVPGAVQEGGREKGFSDELGTYPNYKIIGTYYGKGDR 231 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 + N+ Q++LT++PD+ + N+ + G ++ + + V FD + + A+ D Sbjct: 232 NQTYNITQDILTSNPDITGFYTVNEGSSAGVTLGVREGDLKEKIFVAFDPSTEVLDAIRD 291 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G + +AQ P IG V A KVL GE V+ K V + V Sbjct: 292 GYVDGAVAQNPYLIGRTAVLNAIKVLNGETVEKKIDVPVTWVT 334 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 29 IALVVS-TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + S + +NPF + D +A LG L+ ++ + + + ++D+ +G K+L+ Sbjct: 84 VGFSQSESTSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLI 143 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATK---GEVVSHIASDNVLGGKIAGDYIAKK 144 + P +SD +G A+ A IPV+T+DR T + ++ I S+ +IA D +A Sbjct: 144 VAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTACSDFIAFIGSNFYGQAQIAADDLATA 203 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLL 202 G AKV L G G + +R GFQ V A V+ASQ FD+ G +VM +L Sbjct: 204 TGSQAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKFDQTDGQSVMAQML 263 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIA 259 A+P + AV+A+NDEMALGA++A+ AGK D+ +V DGT + V G + A + Sbjct: 264 QANPGITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQQAVQDVAAGTIYADVE 323 Query: 260 QLP 262 P Sbjct: 324 TNP 326 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 145/299 (48%), Gaps = 10/299 (3%) Query: 7 ATLVSAVALSATVSANAMAKDTIALVV----STLNNPFFVSLKDGAQKEADKLGYNLVVL 62 +V AV +A+ + T+ ++V + F+ L G + A++ G N+ V+ Sbjct: 16 ILIVVAVVGIYKWAASQRTEKTVDIIVTVKAKSSAIDFWKVLITGVEDAANEFGANVTVI 75 Query: 63 D--SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 S+ + ++ + +++ TD + + + +A I +IT+D + Sbjct: 76 GPPSETEIDTQTEQLKQAIRQKPDAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRINSD 135 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGE--GAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + +S IA+DN+ G+ AG+ +AK E +KV + + GTS+ ER +G +Q + H Sbjct: 136 DALSFIATDNIAAGEKAGEEMAKLLPESSSSKVAIMSYVYGTSSQLEREKGVRQWLEGHS 195 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMV 236 V ++ ++ K + + LL+ P ++ + N+ +GA RA++ G S V + Sbjct: 196 HIEVASTLYSEGRLEKAYELTKELLSEDPGIKGIVGLNEPSTVGAGRAIRDLGLSGKVKL 255 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 VGFD + D K + G L ATI Q P +G V+TA + ++G+KV + ++ K Sbjct: 256 VGFDSSVDEVKLIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPKLIDTESVIINK 314 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 148/298 (49%), Gaps = 6/298 (2%) Query: 5 KLATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD 63 K + A++L A VS++A+AKD + +V + F+ ++K G + A +LG + Sbjct: 43 KTRHFIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSYVG 102 Query: 64 SQNN--PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 + A+++ V++ + LL+ D++A+ V+ AN I V+T D Sbjct: 103 PADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINSDI 162 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKF 179 VS +A++N G A D +A + KV + +AGTS+A ER EGF + + Sbjct: 163 PVSFVATNNRKAGAQAADALASQVNNKGKVGIIAHVAGTSSAIERSEGFMERMKEKYPDI 222 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVG 238 VL Q +D D K ++ +++ A+PD+ ++ N+ LG A+ + K V V+G Sbjct: 223 KVLPVQYSDGDPQKAMDKTIDMIQANPDLAGIYGTNEGSTLGVANAIDSQNLKGKVKVIG 282 Query: 239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 FD T + +G + + Q QIG +G++T + L G+ V+ + + +K V + Sbjct: 283 FDSTEAIINFLKNGVIQGFVVQDAYQIGYQGIKTLNAALSGQAVEKEIDIPVKFVNAE 340 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 132/305 (43%), Gaps = 19/305 (6%) Query: 3 MKKLATLVSAVALSATVSANA-------MAKDTIALVVSTLNNPFFVSLKDGAQKEADKL 55 M KL A AL+ A + + + + + + A Sbjct: 1 MTKLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDA 60 Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 G L D+Q ++ ++ + ++ +P ++ A A IPV+ DR Sbjct: 61 GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 116 QATKGE---VVSHIASDNVLGGKIAGDYIAKKA---GEGAKVIELQGIAGTSAARERGEG 169 + V+ + SD V G+ AG ++ +K ++ELQG G++ A +R +G Sbjct: 121 AVNTKDTSLYVTFMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQGTVGSAPAIDRKKG 180 Query: 170 FQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTA-HPDVQAVFAQNDEMALGALRALQ 227 F++ V A KF ++ SQ DF R KG VM+ L A + ++A ND+MA+GA++A++ Sbjct: 181 FEEVVKADPKFKIIRSQTGDFTRAKGKEVMEAFLKAEGRKINVLYAHNDDMAIGAIQAIE 240 Query: 228 TAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA 284 AG D+ ++ D +A+ GKL T+ P +G + + + G+ V Sbjct: 241 EAGLKPGKDITIISIDAVKGAFEAMMAGKLNVTVECSP-LLGPQLMAAVKDIKAGKTVPK 299 Query: 285 KYPVD 289 + + Sbjct: 300 RIVTE 304 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 8/301 (2%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKE-ADKLGYNLV 60 NM++L + + + V A IA++V T N+ ++ +++ GA A Y + Sbjct: 22 NMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMT 81 Query: 61 VL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 S++ A ++ V D + +++ P+D DA+ +++ A +A+IPV+ +D + Sbjct: 82 FQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMIS 141 Query: 119 KG---EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 S +A+DN G+ G + G+ KV + + G + R GF++ +A Sbjct: 142 DSGAKYYQSFLATDNEAAGEALGKEMVDHVGQTGKVAIMSYVPGVGSEIGRVGGFRKYIA 201 Query: 176 AHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-D 233 H ++ + +N ++L ++PD++ +FA N+ A+G RA+Q AGKS Sbjct: 202 EHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFAANEMTAVGVGRAIQQAGKSGK 261 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 + + FDG D + V G Q +GAKGVETA VL G K + V Sbjct: 262 LYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTGAKPTKYVNTGVVFV 321 Query: 294 V 294 Sbjct: 322 T 322 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 9/300 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV- 61 MK+ L+ VA+ ++ A + VS + + + K + L +L+V Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQCSEDIWRDKLNDELKMGEYLNDSLIVK 60 Query: 62 -LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 S ++ + V G +L+++P A+ +V+ A IPVI DR+ Sbjct: 61 LASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTNSD 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 + + I DN GK G +IA++ +++E+ G+ G+S A ER GF A+ + Sbjct: 121 KYTAFIGCDNYTIGKSMGTFIAQQLQGKGRIVEISGLEGSSPALERHRGFMDAIKPYPGL 180 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVG 238 V+AS+ ++ G+ M+ +L D VFA ND +A GA A + K + G Sbjct: 181 QVVASEEGNWKEEGGIQAMKRILKQTQDFDYVFAHNDCLAWGAYVAARQMRVKRNYKYTG 240 Query: 239 FDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DG G + V DG A+ G + + A K+LK + + + ++ + Sbjct: 241 VDGMATEGGGLELVRDGIFEASYLYPTK--GDEVIALAMKILKHQPYERDNYLSTSIITQ 298 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 7/300 (2%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 ++ LA + +A + +SA + A T ALV FF + GAQ A G +LV+ Sbjct: 8 KLRLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVI 67 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 +S +NP + +++ +G K +L+ D + + AVK A ANIPVI +D G Sbjct: 68 FNSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP 127 Query: 122 VVSHIASDNVLGGKIAGDYIA----KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + DN+ GG+I G Y K+ G A+ + + G ++ +R +GF++ + ++ Sbjct: 128 QAAQVGVDNIEGGRIIGQYFVDYVQKEMGGQAR-LGIVGALNSAIQNQRQKGFEETLKSN 186 Query: 178 -KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVM 235 K + + K + +NL+T +PD+ A++A + LGA+ A++ G+ D+ Sbjct: 187 PKITIANVVDGQNVQDKAMTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIK 246 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V G+D T ++ G + A + Q P+++GA+ + + + G+ V V +V K Sbjct: 247 VFGWDLTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTILVPATVVTK 306 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 126/278 (45%), Gaps = 14/278 (5%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEA-DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKIL 86 TI + + V+ + +K G+ L+ D+Q ++ V+D + ++ Sbjct: 51 TIGFSQVGAESDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVI 110 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQA---TKGEVVSHIASDNVLGGKIAGDYIAK 143 I P + A A+IPVI +DR + SD G A +++ Sbjct: 111 AIAPVTETGWETVLGEAKDADIPVIIVDRMIKVSDDSLFSCWVGSDFQKEGVNAAEWLVN 170 Query: 144 KAGEGAK-----VIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNV 197 E K V+ LQG G+SA R +GF + + FN+LA Q +F + KG V Sbjct: 171 YMKEKGKTDKQNVVVLQGTIGSSAEIGRTKGFGDTIKKYDNFNILAQQTGEFTQAKGQEV 230 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKL 254 M++ L + D+ V AQND MA GA+ AL+ AGK DV +V FD K++ G + Sbjct: 231 MESFLKQYNDIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDM 290 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 ++ P G + E A K++ EKV+ VD K+ Sbjct: 291 NVSVECNPLH-GPRVAELAKKLMNDEKVEKIQYVDEKV 327 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 12/304 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG---Y 57 MN++ + +A A S A ++ + V L NPFFV++ GA+ A K+G Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + + S+ + ++ +++ ++L+N +D + +K A A I + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGIA--VVAVDV 118 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + SDN + G + ++A++ G V+ + G +A R G ++ + + Sbjct: 119 GAVGADATVMSDNAMAGAESCKFMAQQLGGRGNVVIVNGPP-VTAVSARVAGCKKVLGNY 177 Query: 178 K-FNVLAS-QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 +L+ Q A R G+ M NLLTAH + AVFA ND +GA A++ AG+SDV Sbjct: 178 PGIKLLSDNQDAHGSRDGGMETMANLLTAHKKIDAVFAINDPTGIGAELAVKQAGRSDVK 237 Query: 236 -VVGFDGTPDGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGE-KVQAKYPVDLK 291 + DG PD EKA+ D K A + AQ P + V+ +L G+ +++ + Sbjct: 238 LIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKRPAKSQVLLPTP 297 Query: 292 LVVK 295 V K Sbjct: 298 AVTK 301 >UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Bacillaceae RepID=A4IT20_GEOTN Length = 337 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 3/281 (1%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QNNPAKELANVQD 77 A A LV L+N ++ ++ GA+ A +L +L + Q N + L ++ Sbjct: 42 TLAKAKDTYHFVLVPEELDNDYWRLVEKGAKAAARELDVDLEYIGPRQANIDEHLRILKK 101 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 ++ + NIPV+T+D A V +I +DN G IA Sbjct: 102 AAAAKVDGIITQGLTEAEFVPVINEIVDKNIPVLTIDTDAPTSWRVGYIGTDNYYAGFIA 161 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 G + + V + G ++R GF+ AV K ++A + + R++ Sbjct: 162 GRALVEDTQGMVNVAIITGSLTAVHQQQRVRGFRDAVKNEKRIRIVAVEESHITRVQAAE 221 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLA 255 +L HP+V A + + A+G R ++ + + ++GFD P+ + + G + Sbjct: 222 KTYTILKKHPEVNAFYGTSALDAIGIARVVEQFHREQETYIIGFDTLPETIEYLQKGTIE 281 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 AT+ Q P ++G + V+ ++ G V A + K++ K+ Sbjct: 282 ATVVQEPYEMGYRAVKMMADIVAGHDVPAITNTETKVIRKE 322 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 136/271 (50%), Gaps = 7/271 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLG--YNLVVLDSQNNPAKELANVQDLTVRGTKIL 86 +++++ T +N F + + +K ++ ++ LDS+ + +++ V++ + GT+ + Sbjct: 69 VSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILNGTQAI 128 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 + D+ V+ +A +P+I +R S + +D + G + + +K G Sbjct: 129 ICLAVDAKQSEPIVRACKEAGVPLIAFNRIFEN--CDSFVGADGAVAGSLLARFTGEKTG 186 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTA 204 V + GI G R + + + V+ D+ R K L +++ L + Sbjct: 187 GKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGDWKRDKALQLVETWLQS 246 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 D+ A+ ND+MA+G A++ AGKSD ++V G +G PDG AV DGK+AAT+ Q PD Sbjct: 247 GTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDGINAVRDGKIAATVFQNPD 306 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + + +E A + + GEK ++K + +LV Sbjct: 307 RQAEEALEAALQYIHGEKPESKIMIPFELVT 337 >UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Proteobacteria RepID=A5FXE6_ACICJ Length = 328 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 146/283 (51%), Gaps = 4/283 (1%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 A S TIA+ V +L+NPFFV+ + A +EA KLGY +V N +L ++ Sbjct: 31 AIHSQKGSNGKTIAIFVPSLSNPFFVAEEKFAAEEATKLGYGTMVASHNGNAYTQLNLIK 90 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGK 135 R ++++ +D+ +AVK+A +A +PV +DR+ KG + I S+N G + Sbjct: 91 TAIARHVAAIILDNAGADSSISAVKLATKAGVPVFLIDREINAKGIAKAQIVSNNFQGAQ 150 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKG 194 + G AK G +EL G+ + A+ R +G + ++A Q AD+ + KG Sbjct: 151 LEGTEFAKLMGYKGTYVELTGLPSDTNAKVRSQGVASVLKHFSGMKMVAVQTADWSQSKG 210 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKL 254 V Q LL AHP ++ + A ND MA+GA AL A K +V+V GFDG+PD ++ G++ Sbjct: 211 FQVTQTLLEAHPHIKGLIADNDTMAMGAEAALLAAHKPNVIVTGFDGSPDVINSIRKGQI 270 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKV--QAKYPVDLKLVVK 295 A + Q + V ADK ++ K K ++ L+ K Sbjct: 271 KADVLQPIATFSREAVIEADKYIRTGKTGKPEKQELNCTLITK 313 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 126/302 (41%), Gaps = 10/302 (3%) Query: 1 MNM--KKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GY 57 MN+ + L ++A+ + I ++ + ++ D + E G Sbjct: 1 MNLPSRYLLLFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELSLHPGA 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 LV D+ NN ++ V+++ +G +L+I+P ++ + V+ IPVI +DR+ Sbjct: 61 KLVYADADNNSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDRKT 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 T ++ +DN G +A Y+ A ++E+ G+ G+S ER +GF + Sbjct: 121 TSNLYTCYVGADNYQIGYMASQYLGNTISGPANILEVMGLPGSSPTIERNKGFNDGLKKF 180 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVM 235 + + D+ + + + D+ VFA ND MA A + G S Sbjct: 181 PNLKIKSQVYGDWMKPNAERQLSKISDQLNDIDVVFAHNDNMAFAAQSVFKKLGIASQAK 240 Query: 236 VVGFDGTPDG---EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 +G D TP + +++G + A++ G + + TA K++ + + + Sbjct: 241 FIGIDATPGAGGGLQMISNGLIDASMLYP--TGGKEAITTAIKIMDKIPFSKELILPSLV 298 Query: 293 VV 294 + Sbjct: 299 ID 300 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 146/277 (52%), Gaps = 10/277 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL----DSQNNPAKELANVQDLTVRGTK 84 +A+V + F+ +++ GA A + + V + + ++ +Q+ +G Sbjct: 45 LAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQGVD 104 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAK 143 L+ TD+ + + + A I V+ +D E V A+DNV + A +Y+ + Sbjct: 105 GLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPVFATDNVAAAERATEYLVE 164 Query: 144 KAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNL 201 + G +G KV + GT+ R EGF+ + + ++A Q ++ + + L V +++ Sbjct: 165 QLGEDGGKVAFIPFQPGTATNDTRTEGFKNVLKENPQVKLVAEQSSESNYNRALQVTEDI 224 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 LTAHPD+ A++A N+ LGA A+++AGK ++++VG+D PD KAV +G ++A IAQ Sbjct: 225 LTAHPDLDAIYAANEPGVLGAAEAVRSAGKAGEIIIVGWDTAPDELKAVREGVVSALIAQ 284 Query: 261 LPDQIGAKGVETADKVLK-GEKVQAKYPVDLKLVVKQ 296 P ++G GV A K+++ GE+V+ LV ++ Sbjct: 285 NPFRMGYDGVNAAVKMIRTGEQVEGG-DTGAILVTRE 320 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 7/285 (2%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKELAN 74 +A TIA++ + F V + GA+K+A +LG +V D + KE+A Sbjct: 43 AAAAQGEGKDGYTIAVLAWSQAEEFGVDIISGAEKKAAELGNVTVVKPDPAGDMQKEIAI 102 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGG 134 ++DL +G + + P D++A+ + +A I ++ D T+ + + + SDN GG Sbjct: 103 LEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDID-TEAQCDAKVLSDNAAGG 161 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV-LASQPADFDRIK 193 +A DY+ ++ G KV+ L + G + A ER GF+ +A NV + Q ++ R Sbjct: 162 AMAADYLVQEMGTEGKVLILTEVPGVTTAEERIAGFKDRMAEIAPNVEMVEQLSNGTRDT 221 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN-DG 252 +N+L AHPD+ +F + +LGA A +T + DV++ G+D TP+ + DG Sbjct: 222 HRATTENMLQAHPDITGIFCFMGDNSLGAYTACKTNNRQDVLIAGYDATPEQLDIMKNDG 281 Query: 253 K---LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 L ++A P +IG +ETA +L+GE++ +L L+ Sbjct: 282 PDCNLICSVALYPKKIGYVALETAYNILEGEEINDVVWTELGLLT 326 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 81/292 (27%), Positives = 134/292 (45%), Gaps = 5/292 (1%) Query: 7 ATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN 66 A L+ S T NNP+F L +G ++ + G L+ D Sbjct: 14 AMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDILLTRDPLQ 73 Query: 67 NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSH 125 + K+ +Q++ G ++L +NP D + V A+ +A + +I +D V+S Sbjct: 74 DQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGIINVDTVVKDRDSVISI 133 Query: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA-HKFNVLAS 184 I +DN G++ + K+ E AK++ L TS R +GF +A H + V+ Sbjct: 134 IETDNYQAGQLCALDMMKRKDE-AKIVILDNPIQTSITN-REQGFLDTIADNHNYQVVYR 191 Query: 185 QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTP 243 + A + +VM +LL + ND ALGAL ALQ A + + V++ G DG+P Sbjct: 192 EAAAGEIEVSSHVMADLLRRDISFDVILGGNDPTALGALAALQQARREEGVLIYGIDGSP 251 Query: 244 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 D + ++ G + T AQ P IG K ETA + L GE V+ + ++ + Sbjct: 252 DFKAILDVGYVTGTSAQSPRSIGRKAAETAYRYLDGEPVEKYISMPSTMITR 303 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 141/318 (44%), Gaps = 22/318 (6%) Query: 1 MNMKKLATLVSAVALSATVSANAMAK-------------------DTIALVVSTLNNPFF 41 M KK+ + V++ A ++ + + VS N F Sbjct: 1 MMKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFM 60 Query: 42 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 101 V + + ++ + GY + ++D+ + K+++ ++ + +L+ P D + +K Sbjct: 61 VGMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLK 120 Query: 102 MANQANIPVITL-DRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGT 160 A+ A IPV + + + V S I D GG++ + + K GE AK+ + G G Sbjct: 121 EAHDAGIPVFVIHNNVSATDLVTSLIHVDVRQGGELKMEQVIKDCGEDAKIAIMTGTLGQ 180 Query: 161 SAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMA 219 + G+ + + V+ ++ + +N L + ++ A+ ND MA Sbjct: 181 DTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLASGKEIDAIVCNNDGMA 240 Query: 220 LGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 278 LG + L++AGKS+ + V G D T +G KAV+ G++AATI K E + + Sbjct: 241 LGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGEMAATIYVDSKAEIEKAFEMLEDLKA 300 Query: 279 GEKVQAKYPVDLKLVVKQ 296 G+KV A+Y V LV K+ Sbjct: 301 GKKVDAEYKVPSVLVTKE 318 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 8/276 (2%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKL---GY--NLVVLDSQNNPAKELANVQDLTVR 81 +AL ++ N + ++ EA+KL G + +S ++ K+++++QDL + Sbjct: 49 YVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDINKQISDMQDLITK 108 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI 141 ++I A+ AV+ A +A I V++ D E V+ + D G++ D++ Sbjct: 109 KVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDEQVATVGIDQTEFGRVCADWL 168 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQN 200 KK K++ L GIAGT+ R G ++ + +L S A +D +G M++ Sbjct: 169 VKKLDGKGKIVVLNGIAGTANDTMRWNGAEEVFKQYPDIEILGSANASWDYAQGKAAMES 228 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV--NDGKLAATI 258 +L+A+P++ V++Q M GA+ A AG+ V + + D L+ Sbjct: 229 MLSAYPEIDGVWSQGGAMTQGAIDAFIAAGRKLVPMTSEGNNGALRAWIENRDNGLSCIA 288 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P GA+ + T K L GE+V + +D+ +V Sbjct: 289 PSDPTYSGAEALRTVIKSLDGEEVPKRVTLDIPVVT 324 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 10/297 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDS 64 + + + A K I + ++ + + S+ + EA LVV+D+ Sbjct: 8 ILLWLFLILCFACSPGKKEKKYVIGVSQCSMTDIWRQSMIRDMEVEALNHPEIELVVMDA 67 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS 124 + +++ ++ + +L+I+ +++ V A +A IP I LDR+ E + Sbjct: 68 SQDNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILDRKINSDEYTT 127 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS 184 +I +DN G+ G YI+ ++E+ G G+S+A ER +GF A++ + Sbjct: 128 YIGADNYEIGRSIGMYISSLIKGETTILEIWGRRGSSSATERHQGFVDAMSIDPNVKIRE 187 Query: 185 QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFD- 240 + + + L + DV VFA ND MALGA A++ S V +G D Sbjct: 188 LDGYWYKENAYEEVLK-LDSIEDVDIVFAHNDMMALGAREAIEERDSSLVGHVEFIGVDG 246 Query: 241 --GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G G +AV GKL A+ G ++ A ++L G+ KY + ++ K Sbjct: 247 LLGGGLGVEAVAQGKLDASFYYP--TGGGVAIKVAWQILSGQAYTKKYALSTAMIDK 301 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 158/326 (48%), Gaps = 32/326 (9%) Query: 3 MKK-----LATLVSAVALSATVS-----------------ANAMAKD--TIALVVSTLNN 38 MKK L T ++ ++L+A S A K+ ++ V TLNN Sbjct: 1 MKKRVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNN 60 Query: 39 PFFVSLKDGAQKEADKLGYNLVVLDSQN--NPAKELANVQDLTVRGTKILLINPTDSDAV 96 P+++S+ D AQ+ AD LG +L + Q + K+++ ++ + ++++ SD V Sbjct: 61 PWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGV 120 Query: 97 GNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQ 155 A+K A +A I ++ D + + V+ + + D+V G AG YI ++ G +V + Sbjct: 121 IPAIKKAREAGIKIVNFDTRISDTSVIDAFVGGDDVAGAYKAGKYICEQLGGEGEVAIIT 180 Query: 156 GIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 214 G+ S +R GF QA A + V+A Q A++ K +V N+LTA+P+V+A+FA Sbjct: 181 GLMEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTTNILTANPNVKAIFAC 240 Query: 215 NDEMALGALR--ALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVET 272 ND+MA+G + D+++VG+DG D DG L A ++ GA GV+ Sbjct: 241 NDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMTMDGDLDAFVSLPNLDEGAMGVKL 300 Query: 273 ADKVL--KGEKVQAKYPVDLKLVVKQ 296 A ++ + D LV + Sbjct: 301 ATALVMNSDYHYDREILYDCTLVTGE 326 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 138/271 (50%), Gaps = 3/271 (1%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 + +A+A K TI ++V++L+NP++ S GA ++A LGY VL + K+ + Sbjct: 17 SFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQNELIDT 76 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKI 136 + + ++++ DS A A++ A +A IPV+ ++R+ +V I +N G Sbjct: 77 AIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDDVALEQITHNNFQAGSE 136 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV-LASQPADFDRIKGL 195 + +K E K EL + R + F Q + + V +A Q A I G Sbjct: 137 VANVFVEKMAEKGKYAELTCNLADNNCVTRSKSFHQVIDQYPDMVSVAKQDAKGTLIDGK 196 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 +M ++L AHPDV+ V N +ALGA+ AL+ A +SDV+VVG DG+ D AV G L Sbjct: 197 RIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGIDGSNDERDAVKAGTLQ 256 Query: 256 ATIAQLPDQIGAKGVETADKVL-KGEKVQAK 285 AT+ I A+GV D L KGEK + Sbjct: 257 ATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQ 287 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 136/297 (45%), Gaps = 9/297 (3%) Query: 5 KLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD-KLGYNLVVLD 63 ++ + + A + A+ I + + + + + +EA + + Sbjct: 7 RILFFLLVLWGVAVACSRREARFRIGVSQCS-EDEWRRQMNSEILREAHFYEDVEVDIRT 65 Query: 64 SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV 123 + ++ ++ ++++L G +L++ P ++ + V+ A IPVI +DR+ + Sbjct: 66 AVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSDKYT 125 Query: 124 SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVL 182 +++ +DN GK G+Y+A V+E+ G+ G++ A +R +GF +A++A+ +L Sbjct: 126 AYVGADNYEIGKAVGEYVANVLHGQGDVVEISGLVGSTPAVDRHQGFVKAISAYPGIRLL 185 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDG 241 A + + ++K M LL+ P + V+AQND MA GA A G+ D+ +G D Sbjct: 186 AVEDGAWLQLKAGEKMDTLLSRFPHIDLVYAQNDRMAAGAYAAAAREGREKDMRFIGIDA 245 Query: 242 TPD---GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + V G+L AT G + ++ A +L + + +V + Sbjct: 246 LSGKDYGVEKVLAGELDATFIYP--TGGDRVMQIAMDILNKRDFPRETILGTSVVDR 300 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 222 bits (568), Expect = 7e-57, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 136/298 (45%), Gaps = 8/298 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 +K L + ++ + + K + + + + + + EA L + Sbjct: 4 LKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEASMHPDIILEI 63 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 D++N+ ++A++++ G +L+++P S + A++ A A IP I +DR+ Sbjct: 64 KDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKIEGQN 123 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA-HKFN 180 +++ ++N+ G+ A YI + A +IE+ G G+S A ER GF++ + + + Sbjct: 124 FTAYVGANNIEIGRNAAKYILSHSSGKADIIEITGQEGSSPAYERSMGFKKTLDSVPELK 183 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGF 239 V D+++ + + +LL + +FA ND MALGA ++ ++ ++G Sbjct: 184 VRHVIKGDWEKTSIQSKLSDLLDSVKAPDYIFAHNDRMALGAWEVARSKSLEEEINIIGV 243 Query: 240 DGT---PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 DG G + V D L ATI + + ++ A+ +L GE V + ++ Sbjct: 244 DGVFGPNGGIQLVKDNILNATILYPTGGM--ETIKLAEDILNGENVNKNNILRTVIID 299 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 222 bits (567), Expect = 9e-57, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 148/286 (51%), Gaps = 16/286 (5%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPAKELANVQDLTVRGTK 84 A+++ T F+V + G + E G + + +Q ++ +L ++ +G Sbjct: 65 KKYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQGYD 124 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGKIA 137 + I P V + A I ++ +D + G V+ +A+DNV G Sbjct: 125 GIAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGAKG 184 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNV 197 YI AGEGAKV ++G +G ++ +R +G +QA K ++++SQ AD+DR K +++ Sbjct: 185 AQYIVDTAGEGAKVAIIEGKSGNQSSEDRTQGAKQAFTDGKMDIISSQAADWDRQKAMDI 244 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAA 256 L+ +PD++ ++ ND MALGA++A+ A K ++M+VG DG + ++ + +L+A Sbjct: 245 ASTLIQQNPDLKGIYCCNDGMALGAVQAVINANKLGEIMIVGTDGDAEAVSSIANNELSA 304 Query: 257 TIAQLPDQIGAKGVETADKVLK-GEK-----VQAKYPVDLKLVVKQ 296 T+AQ P QIGA ++ + ++ G+K K PV+ LV + Sbjct: 305 TVAQDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTAE 350 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 7/273 (2%) Query: 30 ALVVSTLNNPFFVSLKDGAQKEADKLGYN---LVVLDSQNNPAKELANVQDLTVRGTKIL 86 AL +S + N F +L QKEA++LGY + D +N+ A +++ ++ G + Sbjct: 2 ALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGI 61 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKKA 145 +I P +D + AVK A + + V+ L+++ + + + +DN G + + Sbjct: 62 IIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNAADTFVGADNESTGAALMKKVMEDL 121 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA 204 ++EL G G+ R +GF +A + V+AS AD+D K L + +N LT+ Sbjct: 122 DGKGNIVELLGPMGSDGQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLTENWLTS 181 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 D+QAV AQND MA+GA +A++ AG +D + V G D T DG A+ +G + T++Q + Sbjct: 182 -SDIQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGGMTGTVSQGTE 240 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G + ++ G+ V + + K+ Sbjct: 241 NQGKISADLCSNLIYGQSVPKEVIATNVVYTKE 273 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 145/309 (46%), Gaps = 22/309 (7%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSL----KDGAQKEADKLGYN 58 MKK+ + + V+ + AK + + + ++ + + + ++ A+ Sbjct: 1 MKKVLIFLLLI-----VTILSFAKFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDVE 55 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 ++ ++ P++++A VQ L +G L+INP +S + A + I I +DR Sbjct: 56 FYLVTAK-EPSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGIN 114 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 E +IA DN + G +AG YIA+K G V+ ++GI T ER E F++A+ + Sbjct: 115 SEEYNVYIAGDNYMYGYLAGKYIAEKLGGKGNVVVIEGIPSTINT-ERVEAFKKALEPYP 173 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMV 236 ++A QP + R K +MQ LLT P++ AV+ +D+M G L AL+ AG+ +++ Sbjct: 174 NVKIIAQQPGYWSREKAFEIMQTLLTKFPNIDAVWTGDDDMLHGVLLALKQAGRDKNIVL 233 Query: 237 VGFDGTPDGEKAVNDG-KLAATIAQLPDQIGAKGVETADKVLKGEK--------VQAKYP 287 VG + K + DG L P + + + A LKGE + K Sbjct: 234 VGGACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGEHLNGFYQRGIPRKII 293 Query: 288 VDLKLVVKQ 296 + + V K+ Sbjct: 294 LSTETVTKE 302 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 132/275 (48%), Gaps = 3/275 (1%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV 80 A K +V+ + N FFV + +G K A+ G ++ + N +++ +++ Sbjct: 54 AGGADKIVCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFDNQISLIENFIE 113 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY 140 +G +L++P DS+ + ++ A+ A IP IT+ Q + + +D +I + Sbjct: 114 QGVDCILVDPLDSEGLKPVIEKASAAGIPTITMAGQVDVETNYTTVYNDEENT-RIIAEM 172 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQN 200 AK GE K L G G + R +G+ + + + QP ++D G+ Q+ Sbjct: 173 TAKMIGEEGKTALLYGNKGNLVSDLRQKGYYAGMEKYPNITVVEQPTNWDPPTGMKAAQD 232 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIA 259 L+ A+PD++A+ +D + L A +A++TAGK +++V +DG D KAV G+ +T+ Sbjct: 233 LIAANPDLKAIHCISDAVTLAAYQAVKTAGKEGEIIVTSYDGNDDALKAVESGQFTSTVL 292 Query: 260 QLPDQIGAKGVETADKVLKG-EKVQAKYPVDLKLV 293 + G ++ A ++ G + +D V Sbjct: 293 TGAKKTGYWNIQVALQLASGVRPAEKILNLDTHFV 327 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 27/319 (8%) Query: 4 KKLATLVSAVALSATVSANAMAKDT----------IALVVSTLNNPFFVSLKDGAQKEA- 52 K + L L+ A+DT + + + + + ++ Sbjct: 10 KVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKETLT 69 Query: 53 DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 + GY L+ +++ ++ ++ + ++ +P D ++ A +A IPVI Sbjct: 70 KENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIPVIL 129 Query: 113 LDRQAT---KGEVVSHIASDNVLGGKIAGDYIAKKAG------EGAKVIELQGIAGTSAA 163 +DR+ + + + SD V G+ AG ++ + ++ LQG AGT+A Sbjct: 130 MDRKINVKDESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGTTAM 189 Query: 164 RERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGA 222 R +GF++ A H +N+L ADF KG M+ LL +P++ + +QND+M GA Sbjct: 190 FGRTQGFEEIAAKHENWNILEQTNADFTTAKGEEEMRRLLNTYPEIDVLVSQNDDMTFGA 249 Query: 223 LRALQTAGKS-----DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 L A+Q+AG++ D+ V+ FDGT + V G + + P Q G E + Sbjct: 250 LEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVECNPYQ-GKYIEEIIQALE 308 Query: 278 KGEKVQAKYPVDLKLVVKQ 296 G+ ++ V+ K+ ++ Sbjct: 309 TGQSIEKDNYVEEKVFTQK 327 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 11/300 (3%) Query: 4 KKLATLVSAVALSATVSANAMAKD-TIALVVSTLN-NPFFVSLKDGAQKEADKL-GYNLV 60 KKLA ++ +A S S + AKD I + + + + + + + K + Sbjct: 3 KKLA--ITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEGI 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK- 119 VLD+ N A+++A VQDL + +++ PT+ A+ V+ A Q IPVI + ++ Sbjct: 61 VLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISEK 120 Query: 120 --GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + + + G+ A + + + +V+++ G G A R +GF+ ++AA Sbjct: 121 GQEFITAFSGPNTITQGQYAAELMCEGLNGKGQVVQITGQPGYQTAINRQKGFEDSLAAD 180 Query: 178 --KFNVLASQPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGKSDV 234 +++ SQP D++R K VM+N +T + V+A +D M +GAL A++ A ++ Sbjct: 181 CPGVSIIDSQPGDWNREKSQRVMENFITRFGTKIDGVYAADDNMGIGALNAIKEADLKNI 240 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +VG G A+ +G ++ Q P + K+L G+KV+ D V Sbjct: 241 KIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILNGDKVEKDNYFDTPKVT 300 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQ---KEADKLGYNLVVLDS----QNNPAKELA 73 + + + A V N + + +G + ++A G L V + +++ +L+ Sbjct: 86 TKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEGQLS 145 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 ++D +G +L++P ++ A++A+IPV ++ + + + +++ Sbjct: 146 ILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGAD--MFVGPNSLEQ 203 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPADFDR 191 G++A +++ +K G V + G+A T+ R R +GF++ A + V+A Q AD+DR Sbjct: 204 GQLAAEWVNEKLGGSGDVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQVVAKQNADWDR 263 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKA 248 + +V L +PD++A+F ND MALG + A++ A D+ V+G DG + + Sbjct: 264 SQAKDVAATFLKTYPDLKAIFCNNDVMALGVIEAVKEADLTLNKDIYVIGCDGQSEAYDS 323 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + ++AATI P G E + L G+ V K++ Sbjct: 324 IRANEMAATIDTFPYYEGYMAAEVCYRSLIGQTVPRVVFTPSKMLD 369 >UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_BACFN Length = 917 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 145/307 (47%), Gaps = 19/307 (6%) Query: 2 NMKKLATLVSAVALSATVSA-----NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL- 55 N+ +LA L+ A LS +S+ K I T ++ + ++ Q EA Sbjct: 5 NLFRLAFLLFA-GLSIFLSSCQPKEEGDKKYVIGFSQCT-SDSWREAVLLEMQIEASNYR 62 Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 LVV ++ +N +++++ ++ L + +L+I+P ++ + + A + IP I DR Sbjct: 63 NVELVVYNAMDNSSRQVSQIRKLISQNVDVLIISPNEAVPITDVAVEAYRKGIPTIIHDR 122 Query: 116 QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 + E I ++N G G+YI + +K++E+ G+ G+S A ER +GF + Sbjct: 123 KIQSDEYTVSIGANNYNIGSAIGEYINGQLPPNSKILEIWGLEGSSPAMERHDGFIDHLR 182 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT----AGK 231 + K + + + + N L D+ V+A ND MAL A + +GK Sbjct: 183 SDKNFQVTQVFGKWHYNSAYDAV-NRLATFADIDLVYAHNDVMALAARDVIMKRDSVSGK 241 Query: 232 SDVMVVGFD---GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 + +G D G G +AV D KL A+ Q P GA ++ A +++ GEKV+ Y + Sbjct: 242 R-IRFIGIDGVYGDGAGLQAVADEKLEASF-QYPTG-GAISIQVAMQIINGEKVKKNYVL 298 Query: 289 DLKLVVK 295 + ++ + Sbjct: 299 NTAIINR 305 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 80/300 (26%), Positives = 143/300 (47%), Gaps = 11/300 (3%) Query: 6 LATLVSAVALSATVSANA-------MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 L S + + +S+N +K I T+NN +F + + + ++ G Sbjct: 16 LVFCTSIIGICIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGDT 75 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L+ D + K++ + D + INP D + NA+ A +A I +I +D Sbjct: 76 LITRDPALSLDKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAGIIIIAIDTDIY 135 Query: 119 KGEVVS-HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 ++ + + SDN G + + + K A +I L+ +A +R GF+ A+ + Sbjct: 136 DDDLTACTVVSDNYKAGVLCAEDLMNK-RNSANIILLEH-KSAKSAIDRINGFEDAIRNN 193 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV 236 K F V+A D + V++N+L DV + A ND ALG + AL+ + V Sbjct: 194 KNFKVVARSDCDGQLETAMPVVENILLKQKDVDTIMALNDPSALGGIMALEEKNIKGINV 253 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G DG+PDG+K V + K++AT++Q P +IG E+ + +G++V K V ++L+ K+ Sbjct: 254 YGIDGSPDGKKMVKEDKMSATVSQSPRKIGRISGESLYNIFQGKEVDKKIVVPVELITKE 313 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 9/278 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN-NPAKELANVQDLTVRGTK 84 K TIA+V L +PFF + G +++A +LG + Q +PA ++ ++DL + Sbjct: 75 KITIAMVPK-LVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDLIRKKVH 133 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 + I+P + +V + + I ++T D + + V +I +DN GK G+ +AK Sbjct: 134 AISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQRVMYIGTDNKAAGKTMGETMAKL 193 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTA 204 KV + G G +R EGF++ V V+ Q D D KGL+V + +L A Sbjct: 194 LNGRGKVGIITGGLGALNLNQRIEGFKEGV-GPNIQVVDVQATDDDLQKGLSVSEAMLRA 252 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD----VMVVGFDGTPDGEKAVNDGKLAATIAQ 260 HPD+ + + + L++ D +++V FD + ++A+ +G +AAT+ Q Sbjct: 253 HPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQEGIIAATMVQ 312 Query: 261 LPDQIGAKGVETADKVLKGEKVQ--AKYPVDLKLVVKQ 296 P Q+G V+ A +L G+ + +V K+ Sbjct: 313 RPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKE 350 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 4/285 (1%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 A T+ + TL+ P+FV + + A K G +V D+ + AK +NV Sbjct: 136 GAASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNV 195 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGK 135 +DL + ++I+ ++ + A P I +DR+ G S I DN G+ Sbjct: 196 EDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFRSGTYASWIGPDNEAIGR 255 Query: 136 IAGDYIAKKAGEGAKVIELQ-GIAGTSAARERGEGFQQAVAAHKFNVL-ASQPADFDRIK 193 G+++A K G+ A V ++ G A S R G ++A+ A ++ ++ Sbjct: 256 QDGEFLAAKLGKDATVALIKGGPADNSIGLARTTGVKKALDAAGIRMVEGPDYGNWASDG 315 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVND- 251 GL VM++LL +H D+ AVF +ND M LGA RA++ AG+ ++++ G DG + +A+ Sbjct: 316 GLTVMESLLASHKDLDAVFCENDAMCLGAQRAVKDAGREKEIVLAGVDGQAEALQAIAAG 375 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G T DQIG+ G++ A +L G+K + VD V K+ Sbjct: 376 GNYLVTGLNDADQIGSLGLDRAVDILDGKKPEKDTVVDSPQVTKE 420 >UniRef50_C1D5Z3 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5Z3_LARHH Length = 332 Score = 219 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 140/304 (46%), Gaps = 11/304 (3%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 N K+ + +A A S IALV+ +L+NP+F+ ++ GA++ + L V Sbjct: 24 NRPKIEAVTTASAASPESGKATGNLPRIALVMKSLSNPYFIEMEKGARQAQTENRAELFV 83 Query: 62 --LDSQNNPAKELANVQDLTVRG-TKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + + + +++ + D+ ++I P DS + + A++A I +I LD + Sbjct: 84 KAVGLETSIDQQIQFIDDIINNKLADAIIIVPADSSRLAPVIARAHKAGIHIINLDTRLD 143 Query: 119 KGEVV-------SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 + I DN A ++A ++V ++G + A R EG + Sbjct: 144 ADALAQEGIGPLPFIGVDNHRAAYKAAAHLAASLPPKSEVAIIEGNSNAINALRRSEGAR 203 Query: 172 QAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 QA+ A ++ SQ + + + + NLL +P+++ ++ +D +ALG +R L G Sbjct: 204 QALEAAGMRLVPSQSS-WTIEQAYEITGNLLKQNPELRGIYCISDLIALGVIRYLADHGI 262 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 V V GFDG A+ ++ AT+ Q P + G V+ A + G+ V + V+ + Sbjct: 263 RQVKVAGFDGIAQARAALASNQMVATVDQRPAEQGYLSVKAALDAIAGKPVTGQIKVETE 322 Query: 292 LVVK 295 L+ + Sbjct: 323 LLTR 326 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 219 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 19/305 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK++ +A+ L+A+ +A A D I + +++ N+ F + + EA K L V Sbjct: 1 MKRMIIGTTAMFLAAS---SAYAGD-IGVTIAS-NDTFLAVMVQAMKDEAAKTNQPLQVE 55 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--- 119 + + K+L+ +Q+ +++N +S A KMA A IP++ ++ + Sbjct: 56 FADADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQ 115 Query: 120 -GEVVSHIASDNVLGGKIAGDYIAKKAGEGAK-----VIELQGIAGTSAARERGEGFQQA 173 G + I S + G + + + E K ++ +QG+ AA +R + Sbjct: 116 LGPKAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDV 175 Query: 174 VAAHK---FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 VA + ++ Q A +D +K ++M N +TA AV + ND+MALGA+ +L+ AG Sbjct: 176 VATPECNFMKIIDEQTAQWDPVKAQDLMTNWITAGHKPVAVLSNNDDMALGAVNSLKAAG 235 Query: 231 --KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 DV+V G D T + V G L AT+ Q GA V+ A K+ KGEKV++ + Sbjct: 236 WEMKDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESPVWI 295 Query: 289 DLKLV 293 +LV Sbjct: 296 PFELV 300 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 147/306 (48%), Gaps = 16/306 (5%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDS 64 + ++ +A L+A ++ A A +TI + + ++ F L+ G Q A ++G L + D+ Sbjct: 1 MKSIFTAAVLAALMAGTASA-ETIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIEDA 59 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK----G 120 Q + A++L V + ++I TD+ A A +A IP++ L+ + Sbjct: 60 QADIARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRLP 119 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAK-----VIELQGIAGTSAARERGEGFQQAVA 175 + +++ S G++ + + + K + L G A+R+R ++ +A Sbjct: 120 KNQAYVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETLA 179 Query: 176 A---HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-- 230 A + + A + R ++V N +T + A+FA +DEMA+GA++AL+ AG Sbjct: 180 AGECKGVTIADERSAAWMRTNAMDVTTNWITTGRPIDAIFANSDEMAIGAIQALKAAGVS 239 Query: 231 KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 K+DV+VVG + DG A+ DG L T+ Q A ++ A + +G+ V + V Sbjct: 240 KNDVIVVGVNAAQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSVDRQVMVPF 299 Query: 291 KLVVKQ 296 +LV + Sbjct: 300 ELVTPE 305 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 91/309 (29%), Positives = 155/309 (50%), Gaps = 14/309 (4%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M+ K + A + AMA +++ TL NPF+ ++ G + A + G Sbjct: 1 MSRLKTTLKLGAAFATLLAVTPAMADGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYY 60 Query: 61 VLDSQNNPAK--ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR--- 115 + +++ A +L + R ++ +S + +K A A I V+ LD Sbjct: 61 MQAVESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLD 120 Query: 116 ----QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAK--VIELQGIAGTSAARERGEG 169 A E+ I SDNVL G +Y+ + G A V+ ++G++G ++R G Sbjct: 121 QAILDAEGIEITFRIGSDNVLAGAQGAEYVVSQLGADATGPVLVIEGLSGNITGQKRASG 180 Query: 170 FQQAVA--AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 F +A A ++AS P D+DR K N+ ++LT +P + A+FA ND MALGA+ ++ Sbjct: 181 FADKLAELAPGLEIVASLPGDWDRGKAANITNDILTRNPGLVAIFAANDGMALGAVESVF 240 Query: 228 TAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 AGK +V++VG DG D K++N+G+L A++AQLP +G + VE ++G +V + Sbjct: 241 AAGKGGEVIIVGVDGNSDAVKSINEGRLTASVAQLPYLVGKQAVENVKIAVEGGEVAKEI 300 Query: 287 PVDLKLVVK 295 V ++ K Sbjct: 301 IVPTLVLTK 309 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 133/308 (43%), Gaps = 23/308 (7%) Query: 3 MKKLATLVS---AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD-KLGYN 58 M K+++ + + + ++ + I + + + + L Q + G Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCSEDI-WRDKLNQELQTATYMEDGVT 59 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + + +N +++ ++ G +L+I+P + A+ V A + IPVI DR+A Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKA- 118 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 G+ + I +DNV G+ GDY+A++ VIEL G+ G+S A ER GF + ++ + Sbjct: 119 DGKYTAFIGADNVEVGRQMGDYVARQLDYHGNVIELMGLKGSSPAIERHRGFIERISRYP 178 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHP-----DVQAVFAQNDEMALGALRALQTAG-- 230 ++ S D+ + G +Q H + VFAQND MA+GA + AG Sbjct: 179 GIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAMGA----REAGLL 234 Query: 231 KSDVMVVGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 + G D P G K V D L+A+ G ++ A +L Q + Sbjct: 235 PKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR--GDLVMKLAMNILNHRPYQKENL 292 Query: 288 VDLKLVVK 295 + LV Sbjct: 293 LQSALVTP 300 >UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIT8_9CLOT Length = 338 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 10/280 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K T V T + FF L+ G +A +LG + D +N+ + + +L G Sbjct: 48 KLTFGWSVYTRDQTFFQQLEKGVVDKATELGIEIKTHDQKNDSNEMVTGCTNLINSGVDA 107 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 L++ P +A+GN V +A+Q +IPVI D + + I SD GG++AG Y A+ Sbjct: 108 LIVCPCKPEAMGNIVTLAHQKDIPVIITDIGDGDSDKDAIIISDMKAGGQMAGVYTAELL 167 Query: 146 GEG----AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNL 201 E +V ++ A+ R EG+++ + F V A+ + +G VM+++ Sbjct: 168 KEKSITSGEVAIIKCEESAVYAQRRNEGYKEEIEKAGFTVAKELVANSKQEEGYTVMKDI 227 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQL 261 L ++PD+ AVFA ND MA GA ALQ AGK+DV+V GF+G + + DGK+ T+AQ Sbjct: 228 LASNPDIVAVFAANDPMAAGAASALQEAGKTDVIVTGFNGDDIALEYIADGKMMGTVAQD 287 Query: 262 PDQIGAKGVETADKVLKGEKVQ------AKYPVDLKLVVK 295 IGAKGVE A ++G+ + + V + + K Sbjct: 288 VLGIGAKGVELAKLAVEGKDIPYDNADKKEVYVPVSFIGK 327 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 160/336 (47%), Gaps = 45/336 (13%) Query: 3 MKKLATLVSAVALSATVSANAMAKDT------------------------------IALV 32 MKK +L+ A+ L+ ++ A + T I + Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 33 VSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 P+F L +G ++L L V D+Q++ ++ +Q G ++++ P Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFIAEGCDLIIMMPVQ 120 Query: 93 SDAVGNAVKMANQANIPVITLDRQATKG-------EVVSHIASDNVLGGKIAGDYIAKKA 145 +++ N+A IP++T+DR+ + ++++H+ D+V GG+ G+ + + Sbjct: 121 LESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQLL 180 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLLT 203 G+ + +QG G S+ R +G ++ ++ + ++A+Q +D D+ + + V QN LT Sbjct: 181 GDEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAITVTQNFLT 240 Query: 204 AH--PDVQAVFAQNDEMALGALRALQTAGKSDVM--VVGFDGTPDGEKAVNDGKLAATIA 259 ++ A+ AQ+ ALGA+ A+++A + +++ V+G+D + ++ + + Sbjct: 241 RFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKAKDMYGSTL 300 Query: 260 QLPDQIGAKGVETADKVL-KG-EKVQAKYPVDLKLV 293 Q P +GA ++ A + L +G E+++A ++ +V Sbjct: 301 QAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVV 336 >UniRef50_A7B2I9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A7B2I9_RUMGN Length = 348 Score = 219 bits (559), Expect = 8e-56, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 21 ANAMAKDT---IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 A A+ K + I ++V + NPFF + ++EA + GY +++ +S NNP KE N+Q Sbjct: 68 ARALFKKSSKIIGMIVPNIENPFFSEIAKAVEEEAFQNGYKMLLCNSANNPKKERMNIQM 127 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 L ++I T+SD G K + +PV+ +DR+ ++G ++ I SD+ GGK+A Sbjct: 128 LVQMQADGIVI-MTNSDRTG---KKIAECGLPVVVMDRKLSEGREIAFIESDHYKGGKLA 183 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNV 197 +++ + + ++ L+G S+ ++R +G++ + + D+D GL Sbjct: 184 AEHLIECGCQH--IVCLRGPMKFSSGQQRYQGYEDVCRKYGRKAVWI-DCDYDYDAGLAA 240 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKL 254 + L+ +PD + A ND A+ + L G+ DV +VGFD + + Sbjct: 241 AEELIRRYPDTDGILASNDMAAMAVYKVLHQNGRRVPEDVQLVGFDNIEFSRRMTPE--- 297 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKV--QAKYPVDLKLVVKQ 296 TI+Q +++G V+ GE++ Q + D++L+ +Q Sbjct: 298 LTTISQPIEEMGKLAVQMIIHH--GEEISYQKENIFDVELIRRQ 339 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 130/277 (46%), Gaps = 11/277 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQ---KEADKLGYNLVV----LDSQNNPAKELANVQDLTV 80 + + + +N F+ + K+G + K G ++ + +++ + +L Sbjct: 74 KMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTDNLVN 133 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY 140 +G L+++P + +V A IP I ++ + D G++A ++ Sbjct: 134 QGYNALMLSPISDSNLTASVDNAKGKKIPTINVNDGLIAS-ADYFVGPDAYQNGELAAEW 192 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVM 198 ++K+ G+ V + G+A AARER GF+ + + NV+A Q AD+DR K + Sbjct: 193 VSKQLGDKGDVAIVIGMAKAFAARERTAGFKGWIKDNNSGLNVVAEQNADWDRQKAKELA 252 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 + +PD++A+F ND+MALG + A++ A K D++VVG DG + ++ GKL AT+ Sbjct: 253 STWIQQNPDLKAIFCNNDDMALGVVEAVEEA-KKDILVVGVDGIGEAYDSIRAGKLDATV 311 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + E +VL G+ + L+ K Sbjct: 312 DSFGYYMSQVATEVTLRVLAGQDIPRVTHTPQALIDK 348 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 18/305 (5%) Query: 1 MNMKKLATLVSAVALS-ATVSA--------NAMAKDTIALVVSTLNNPFFVSLKDGAQKE 51 M K L + A + A +SA + IA+V + F+VS+ GA Sbjct: 1 MKKSKYIALAAVAAFTVAPLSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDA 60 Query: 52 ADKLGYNLVVLDSQNN--PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 109 A K G + N+ K+ VQ+ + + I P D A+ AV+ A A+IP Sbjct: 61 AAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIP 120 Query: 110 VITLDR--QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG 167 + D + + S + + N GK+A + + K + + + ER Sbjct: 121 LFAFDTAFETNADAITSTVKTSNREVGKVAAENLIALLNGKGKYAVIAHSQTDATSTERR 180 Query: 168 EGFQQAVAAH--KFNVLAS-QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 224 +GF + + ++ Q ++ D+ K ++ +L A+PD+ A+FA N+ +GA Sbjct: 181 DGFLDYMKKNAPDMEMVGEVQYSNADQAKAQDIASAILQANPDLDAIFATNEATVVGAAT 240 Query: 225 ALQTAGKS--DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 +++A KS V++VG D ++ + DG ++ +++Q P QIG K +E A K L GEK+ Sbjct: 241 PVESALKSGHKVLLVGVDSGKAQQQYIRDGVISGSVSQNPYQIGYKTIENAVKSLNGEKI 300 Query: 283 QAKYP 287 Sbjct: 301 DKVID 305 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 10/279 (3%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTK 84 + I +++S+ +N F+ ++K ++ A+ LG + V D++++ +L + + G Sbjct: 90 EKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFD 149 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGKIA 137 ++++P D + + AN+A IPVI L G + I + G Sbjct: 150 AIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEEQGSTV 209 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLN 196 + + + +G KV L G+ G + R G + ++A+Q D+D K Sbjct: 210 ANDMISRMEDGGKVAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQACDWDTEKAYE 269 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAA 256 +++LTAHPD++ +FA ND MAL A++ALQ G DVMV G D T D + A+ DG + Sbjct: 270 ATKDILTAHPDLKGIFACNDNMALAAVQALQEMGNKDVMVYGVDYTTDAKAAIEDGTMMG 329 Query: 257 TIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 ++ E A +++G+ + + L LV + Sbjct: 330 SMTYSSAIYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQ 368 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 141/297 (47%), Gaps = 9/297 (3%) Query: 7 ATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS- 64 A + ++ L T + + + L+ T +NP+FV L++ AQ +ADK G L+ + Sbjct: 15 ALMAGSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGA 74 Query: 65 -QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-V 122 + ++ ++++ +G K +LI P S V +A+K A A + VI LD + V Sbjct: 75 FDGDNEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDAV 134 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEG-AKVIELQGIAGTSAARERGEGFQQ--AVAAHKF 179 + A+DN G G ++ G +V+ L G G + R +GF + + + Sbjct: 135 DATFATDNKAAGVAQGKWVKAALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLTDNSP 194 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVG 238 ++ + + D+ K M+NLL P V A++ N+ A GA +A+Q G++D V + Sbjct: 195 EIVGQENTNGDQTKAQTAMENLLQRAPGVNALYTINEPAAAGAYQAIQAVGRADQVTIGS 254 Query: 239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQAKYPVDLKLVV 294 DG+ G V GK+ AT+ Q P ++ GV+ K + G K +L+ Sbjct: 255 IDGSCTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGFNDTGSELIT 311 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 159/318 (50%), Gaps = 25/318 (7%) Query: 1 MNMKKLATLVSAVALSATVSANAMA--KDTIALVVSTLNNPFFVSLKDGAQKEADKL--G 56 +N+ + ++SA + +A A + K I ++ N+ ++ Q A + Sbjct: 2 LNITRRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKD 61 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 +L+V +++ AK++++V+ L V+G K+L+I+ DS A+ +K A IPVITL+R Sbjct: 62 VDLIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERS 121 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 V H+ N G +AG YIA+ V+E++G + A ER EGF +A+A Sbjct: 122 L-DIPVTLHVGPHNKPIGTLAGKYIAEALKGKGNVVEIKGDPAVAPAVERHEGFAEAIAG 180 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGKSD- 233 + V+A AD+D+ K L M++ L P +QAV+A ND MA GALRA+Q AG+ Sbjct: 181 TEIKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMAFGALRAIQAAGRDKE 240 Query: 234 -VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK--VQA------ 284 ++++G DG +AV G L AT + +GV A + + ++ Sbjct: 241 GILIIGIDGENAAIRAVAKGDLTATFTYS--TVAPEGVIAAHALATNDTAALEKLGTLTK 298 Query: 285 ------KYPVDLKLVVKQ 296 + + K++ K+ Sbjct: 299 KDDGSMEIEIASKMITKE 316 >UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QS72_MYCS2 Length = 348 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 135/285 (47%), Gaps = 4/285 (1%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ-NNPAKELAN 74 + T A IA + + + F+++++ GAQ+EA LG + Q +P + Sbjct: 49 TVTAPPKASKNYNIAFLQGVVGDQFYITMQCGAQEEAANLGVTVNTQGPQKFDPTLQKPI 108 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLG 133 + + LL+ PTD A+ ++ A A I V+ +D VS IASDN G Sbjct: 109 LDSIVASKPDALLVAPTDVQAMQMPLEQAAAAGIKVVLVDTTTNDPSYAVSAIASDNEGG 168 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G+ A + I + EG KV+ + G S R +GF++AVA F + Q + D Sbjct: 169 GRAAFEAIKQLHPEGGKVMVMGLDPGISTTDARTKGFEEAVAEDPGFTYVGVQYSHNDPA 228 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVND 251 ++ L PD+ VFA N A G+ ++ AGKS+ V VVGFD P+ +A+ + Sbjct: 229 TAAQLIGAQLQRDPDLVGVFAANLFTAEGSATGIKQAGKSEQVAVVGFDAGPNQIQALRE 288 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G + A +AQ P IG GV+ A L+G + ++ ++ Sbjct: 289 GTVQALVAQDPGTIGKFGVDEAVTALEGGENSPNVQTGFTIITRE 333 >UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Marinomonas RepID=A6W303_MARMS Length = 325 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 80/300 (26%), Positives = 137/300 (45%), Gaps = 13/300 (4%) Query: 6 LATLVSAVALSATVSANAMAK--DTIALVVSTLNNPFFVSLKDGAQKEADKLG---YNLV 60 LA V AV+LS VS ++ + +I + V+ L NP+FV L + A +A++L ++ Sbjct: 28 LAVSVIAVSLSPLVSQSSEPQPLKSIGISVADLGNPYFVQLVETASVKAEELAGEPVKML 87 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + + +++ + D + ++++ D V V A +A I VI +D A Sbjct: 88 IRSDAYDWQRQIGQINDFIDQKVDLIVLTAADEYKVAAVVAKAQRAGIKVIAVDVNAQGA 147 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + + I +DNV G IA + +A+K + + G+ S+ ER G + A+ + Sbjct: 148 D--ATITTDNVQAGAIACEKLAEKINYQGNFVIINGVL-VSSVIERVAGCKSALNKYPDI 204 Query: 181 VL--ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 L G+ M L+ + + AVF ND A GALRA Q A + + ++ Sbjct: 205 TLLSDRMNGTGSVEGGMEAMTYLMEEYDHIDAVFTINDPTAFGALRAAQQANRKEFVLAS 264 Query: 239 FDGTPDGEKAVN--DGKLAATIAQLPDQIGAKGVETADKVLKGEKV-QAKYPVDLKLVVK 295 DG P + + D AT Q P + K +E +LKG++V Q + L+ K Sbjct: 265 IDGAPFATEIIKQQDNPWIATAVQRPIPMAEKAIEIGMDLLKGKEVAQRFILIPSTLIEK 324 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 5/292 (1%) Query: 7 ATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQ 65 ++ + L+ + A A IA T+ N F + + E + + V D+Q Sbjct: 4 IRMLRVLLLAFCLPAVAAENKVIAFAQDTMANDFRRAQVYEVRDEVARYPQLSFVYSDAQ 63 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH 125 + + ++ + +L++ D AV V A QA IPVI LDR + S Sbjct: 64 GQTSLLIRQIEQFIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGINGKQFTSF 123 Query: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ 185 I SDN+ G+I +YIA + V+ +G+ + R +GF + H + + Sbjct: 124 INSDNIRIGEIGAEYIASRLNGKGLVLLFEGLQKADVTQLRSKGFLTEIGKHSGIRVIRR 183 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMVVGFDGTP 243 ++ R + M+ L++ V A+F+++D M G L + V++VG D T Sbjct: 184 TGNYLRKDAVVEMEKLVSDGIRVDAIFSESDSMLSGVRMVLSKSNIDPRSVVMVGCDYTS 243 Query: 244 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + +A+ DG + ++ P G K VE A K+ GE V +KLV K Sbjct: 244 EARQAIRDGTQSGSVL-FPLG-GKKAVEIALKIFAGESVPKHIYNPVKLVTK 293 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 10/293 (3%) Query: 8 TLVSAVALSATVSANAMAKD---TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64 + ++ L+ +A+ A D I + V+ NPFF A+ +G ++ + Sbjct: 19 CVFGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVA 78 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS 124 + + + G K ++I+ D+D VG AVK A A IPVI +D Q+ V Sbjct: 79 NEDVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQSKNATV-- 136 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLA 183 +I +DN G+I+ +A K G K+ L G SA +R G + + + ++A Sbjct: 137 NITTDNKQAGEISCRSLADKLGGKGKIAILNGTP-VSAVDDRVTGCKGILGQYPDIKIVA 195 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP 243 Q + R L + ++LTA+PD+ FA ND A+G A + G S V++ DG Sbjct: 196 DQRGENSRDSALPIATDILTANPDLDGFFAINDPSAVGVQLAAEQKGAS-VVITSVDGAS 254 Query: 244 DGEKAVND-GKLAATIAQLPDQIGAKGVETADKVLKGEKV-QAKYPVDLKLVV 294 A+ G + AT AQ P + + ++ ++ G++ Q V +LV Sbjct: 255 SATDAIAAGGLITATAAQDPAALMRQAIDLGISIVNGKEPDQKVILVPTELVD 307 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 128/276 (46%), Gaps = 5/276 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPAKELANVQDLTVR 81 A + V TL N ++ SL +G A KLG V +Q + +LA ++L + Sbjct: 54 AAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENLISQ 113 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI 141 G LL +P + AV+ A A +PV+ ++ +++ + G ++ Sbjct: 114 GFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPS-AANYVGNVQKGNGVNVANWF 172 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQN 200 +G KV ++G G AA +R GF + + A KF V+AS PA++ R + N Sbjct: 173 IANRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSREEAFNAAST 232 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIA 259 +L +PD+ +A ND MALG + A++ AGK V V G DG D AV G L T+ Sbjct: 233 ILQQYPDLIGFYANNDGMALGVVEAVKAAGKAEQVAVFGTDGISDAYAAVRAGDLTGTVD 292 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P G +E A +++ G+ + L+ K Sbjct: 293 SFPVLTGEIAMEVALRLMAGQDLPRVVATPQALITK 328 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 138/307 (44%), Gaps = 12/307 (3%) Query: 2 NMKKLATLVSAVALSATVSAN-----AMAKDTIALV----VSTLNNPFFVSLKDGAQKEA 52 + K++ T+ +A + + A A +L+ + N F+ S+ G + A Sbjct: 4 HKKEIITVAILMAAAVVIFAGILKPEATQTKKCSLIYIPKIRDNTNDFWTSVISGCKMAA 63 Query: 53 DKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 ++ +L +L D + N ++ ++ + +L +P+ D+ +K A + I + Sbjct: 64 EEYESDLEILAPDKEENIEEQNKLLKKAIEQKPDAILFSPSSMDSSDELLKEAKEKGIRI 123 Query: 111 ITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGF 170 +D + +A+DNV G++ G+Y K + +K+ + + G S A ER +GF Sbjct: 124 TYIDSYTKEKLQDLTVATDNVNAGRMLGEYARKLIDKDSKIAIVSHVKGVSTAVEREQGF 183 Query: 171 QQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 ++ + + N++ + K + Q L+ +PD++ + N+ A+G RA+ AG Sbjct: 184 REGLGDYADNIVDIVYCNSLYEKSYELAQELMRKYPDLELIAGMNEYSAVGVGRAVSDAG 243 Query: 231 -KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 K + VVG D + + + G I Q ++G GVE +L G+ V+ Sbjct: 244 AKDKIAVVGVDCSQEAINLMEMGVYKGIIVQKAFRMGYIGVEETIHMLNGDAVEKNIDSG 303 Query: 290 LKLVVKQ 296 +LV + Sbjct: 304 CELVTPE 310 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 142/276 (51%), Gaps = 10/276 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + ++ + V+ D QKEA+ GY V+ +++ + AK++++V+DL + L Sbjct: 72 KVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFLF 131 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKG---EVVSHIASDNVLGGKIAGDYIAKK 144 I P D +A+ A++ A +P I LDR+A + + I S+ + G+ D++++ Sbjct: 132 IAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYIWQGEACADWLSEN 191 Query: 145 AG-EGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLL 202 G + K++++ G G S R+R GF+ V + ++A+Q ++ R + VMQN++ Sbjct: 192 GGADSYKIVQITGKVGGSDVRDRQAGFETGVKKYENMEIVATQSGEWSRTEAQKVMQNII 251 Query: 203 TA-HPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATI 258 + D V+ NDEMALG + AL+ AG +DV V+ DG + +A+ G++ Sbjct: 252 QSTGGDFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAIIAGEMNCIA 311 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P + G +T +K L EK++ + ++ Sbjct: 312 TCNP-RFGPVAFDTMEKYLNEEKLEHIINNEEYIID 346 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 126/282 (44%), Gaps = 5/282 (1%) Query: 20 SANAMAKDTIALVVSTLN--NPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANV 75 S+ I +V T++ N F+ L +GA+ A++ G + V+ DS+++ + + Sbjct: 38 SSQNKRTYKIIMVPKTIDESNDFWTGLIEGAKLGAEEFGCEIEVVGSDSEDDYEGQNRLI 97 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGK 135 ++ + LI P AV+ A A I VI +D K +A+DN GK Sbjct: 98 EESIKKNPDAFLIAPCSYTHTTEAVQEAINAGIKVILVDSVIDKEIANGVVATDNFKAGK 157 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL 195 G + +K+ + + G+S A ER +G ++ + + + + Sbjct: 158 ELGTFAKTILKPDSKIGVVAHVKGSSTATEREDGIREGLGEDQNRIQDIVYCNSSYDLAS 217 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKL 254 ++ + +L P++ V N+ A+GA R ++ G D V VVGFD + + + + G Sbjct: 218 DLTEKMLKERPEIDVVIGTNEYSAVGAARGVKKMGMEDQVKVVGFDNSVEQIQLLEAGVF 277 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + Q P IG GVE A K ++G ++ KL+ K+ Sbjct: 278 QGIVIQKPFNIGYLGVEQAVKAIEGYPMEYNLDSGCKLITKE 319 >UniRef50_C2DYY0 Periplasmic sugar-binding protein n=8 Tax=Lactobacillus jensenii RepID=C2DYY0_9LACO Length = 320 Score = 217 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 65/290 (22%), Positives = 128/290 (44%), Gaps = 6/290 (2%) Query: 10 VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPA 69 + A ++ + + I + T+NN F+ L + +K D L++ D + Sbjct: 21 IVLCFYFAVLTQSQKKQKIIGVSYMTMNNSFYQVLNEEVEKRVDARADKLIIRDPALDAQ 80 Query: 70 KELANVQDLTVRGTKILLINPTDSDA--VGNAVKMANQANIPVITLDRQ-ATKGEVVSHI 126 K++ + D +G ++INP D + + + A++ I ++ +D Q A K V + + Sbjct: 81 KQVNQINDFIKKGVSAIIINPVDGNNNKLIAILNKAHKKRIKIVVVDSQMADKAHVDATL 140 Query: 127 ASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQP 186 SDN G + + KK A ++ L+ + S A +R GF + ++V+ Sbjct: 141 LSDNYQAGVLCAKALMKKKKR-ANILLLEHYSAMS-ANDRIRGFTDTLFNKNYHVVGKLN 198 Query: 187 ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGE 246 + L D + A ND+ A+GA+ AL + V V DG+ + + Sbjct: 199 TLGQSEYAYPAVLKRLKTQADFDTIMALNDQAAVGAIAALDSQKVKQVGVYSVDGSANMK 258 Query: 247 KAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + + + + AT AQ P ++G + +L G+ V++K + + L+ K Sbjct: 259 QLLLNNQNATATAAQSPKEMGKLAFKLTYDLLAGKSVKSKIKLPVHLITK 308 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 81/303 (26%), Positives = 135/303 (44%), Gaps = 12/303 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 MN K L V+A+ SA A AK T+ V + ++ + A +LG ++ Sbjct: 1 MNKKTLFAGVAALIASAGF---AEAK-TVCYVTAADSHAYVTPANKAIDARAKELGVEVL 56 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 L + + + R +++ P D A + A A IPV ++ Sbjct: 57 SLSQNFDVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMNDA 116 Query: 121 E---VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA- 176 V S D G++A + + K ++ + G AG R +GF + A Sbjct: 117 AKPFVTSFTGPDVYSEGEMAAEALQKALDGKGSIVIIAGQAGNGTTIGRVDGFNAKLKAL 176 Query: 177 -HKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTA--GKS 232 K VL + ADFD+ K L ++L+T D + V+A +D MA G + A + A GK+ Sbjct: 177 GSKIEVLDTVNADFDQQKALVASRDLITRFGDKIAGVYANDDTMARGFIDAWKEAKSGKA 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 +VG +G D +++ +G++ ATI Q P + G + VL G+K+ A+ P+ L + Sbjct: 237 TPPIVGINGQKDAFESIRNGEMYATIVQSPIEDGLLAINAMADVLNGKKIDARLPIPLTV 296 Query: 293 VVK 295 V K Sbjct: 297 VTK 299 >UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PVL5_9BACT Length = 858 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 121/243 (49%), Gaps = 6/243 (2%) Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 + +++N ++A ++ +G +++++P ++ A+ + A + V+ +DR Sbjct: 14 NVRVEFASAKDNNRVQIAQIERFIDKGADLIIVSPNEAKALTPVINKAFDRGVRVVLVDR 73 Query: 116 QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 ++ + + I +DNV G+ G ++ + G +V+ELQG+ G+S A ER GF++A+A Sbjct: 74 KSASDKYTAFIGADNVAIGRAVGRFVGEHLGGKGRVMELQGLRGSSPAIERDSGFREALA 133 Query: 176 AHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV 234 + V+A+ AD+ +K + + VFAQ D M +GA +A Q G V Sbjct: 134 HYPQIKVVANAHADWFALKAETEATRMFKTVGEADLVFAQCDRMGIGAHQATQKLGIKGV 193 Query: 235 MVVGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 +VG D P DG +AV +G AT G + ++ A +L+G + + + Sbjct: 194 KIVGVDALPTPGDGIEAVKNGTFLATFVYPTH--GDEVLKLAMNILEGRPFRRETILQTG 251 Query: 292 LVV 294 ++ Sbjct: 252 VID 254 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 10/281 (3%) Query: 24 MAKDTIALVVSTLN-NPFFVSLKDGAQKEADKLGYN-LVVLDSQNNPAKELANVQDLTVR 81 ++K + S N NPF + A L+ ++ +N ++++A+V+++ + Sbjct: 53 LSKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQ 112 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK---GEVVSHIASDNV-LGGKIA 137 G + L+I P DS + A A +IP++TLDR+ + +S + S+ G+I Sbjct: 113 GAQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYLSFLGSNFYFKQGEID 172 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 +AK G A V E+QG G S R +GF + A+ ++ Q ++ Sbjct: 173 ARELAKATGGHAMVAEIQGAYGNSVEVARTKGFAAGLKAYPGMKIVTEQTGNWFTTDAQK 232 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DVMVVGFDGTPDGEKAVNDGKL 254 VM +L AHP+V AV+AQ D MA GA+ AL+ AGK V +V DGT G + + DG + Sbjct: 233 VMSQILLAHPNVNAVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTRQGVQDIVDGWI 292 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A P + G G+ V + + Sbjct: 293 YADDETNP-RFGPIAFHELQNWFDGKPVPRHIVLTDHIYTP 332 >UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGH9_9FIRM Length = 288 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 150/286 (52%), Gaps = 21/286 (7%) Query: 31 LVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRG-TKILL 87 +V+ TL+NPF+V + DG Q EA+KLG ++ +D++ + +L +D G L Sbjct: 1 MVLKTLSNPFWVDMADGIQAEAEKLGVTADIFAVDAETDIDGQLKKCEDAINSGSYDGLG 60 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGKIAGDY 140 + P + + +AV ANQ +PV+ +D + G VV SDN G I Y Sbjct: 61 VAPITATNLISAVVAANQKGMPVVNIDAKIDEDALKEAGGYVVGFATSDNHKVGAIGAQY 120 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH---KFNVLASQPADFDRIKGLNV 197 I ++ +G KV ++G AG + R +G ++ + A K+ V+ QPAD+DR K L+V Sbjct: 121 IMEQLPDGGKVAIIEGRAGDLSGELRRDGCKETLEADGSGKYQVVDVQPADWDRQKALDV 180 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAA 256 N++T PD+ A F ND MALG ++A+ G + +++VG D + + ++A+ G + A Sbjct: 181 ATNIITKTPDLNAFFVANDTMALGVMQAIANTGNTGKILLVGTDASDETKEAIKAGNMVA 240 Query: 257 TIAQLPDQIGAKGVETADKVLK-GEKVQAKYP-----VDLKLVVKQ 296 + Q P IGA ++ +K GE Y VD LV K+ Sbjct: 241 -VCQDPAAIGATCLDILVDAIKAGETGSPDYEAVSKLVDANLVTKE 285 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 30/315 (9%) Query: 1 MNMKKLATLVSAVALSA------------------TVSANAMAKDTIALVVSTLNNPFFV 42 M +KK+ L+++ L T +AN+ +K I + + Sbjct: 1 MKLKKMMALMASAVLCIGMLSGCGGSGAGGGDSAKTSAANSSSKKIIGFAQVGAESGWRT 60 Query: 43 SLKDGAQKEAD-KLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 101 + D + ++L D Q ++ ++ + ++ ++P +K Sbjct: 61 AETDSIKSIPTLDPNFDLKFSDGQQKQENQIKAIRSFIAQKVDLIALDPVVETGWDTVLK 120 Query: 102 MANQANIPVITLDRQA---TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGA--KVIELQG 156 A A IPV+ +DR+ + SD V GK A + + G+ A + ELQG Sbjct: 121 EAKDAKIPVVIVDRKVTVSDDSLYKCFLGSDMVAEGKKAAQILIDQFGKDATLNIAELQG 180 Query: 157 IAGTSAARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQ 214 G++A R +GF A+ + ++ SQ DF R KG VM+ L + D + +++ Sbjct: 181 TVGSTAMVGRQQGFNDAIKDCPNYKIIKSQTGDFTRAKGKEVMEAFLKSDGDKINVLWSH 240 Query: 215 NDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 ND+MA+GA++A++ GK D+ +V DG D +A+ DGK AT+ P +G + +E Sbjct: 241 NDDMAMGAIQAIEEYGKKPGKDIFIVSVDGIKDIFQAMVDGKANATVECNP-LLGPQLLE 299 Query: 272 TADKVLKGEKVQAKY 286 A +L G++V+ Sbjct: 300 VAKNILDGKEVERTI 314 >UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83 Tax=Proteobacteria RepID=B2JDH5_BURP8 Length = 321 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 153/300 (51%), Gaps = 10/300 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKD----TIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 ++ ATL A + T A D I + LNNP+FV+++ A +G Sbjct: 17 LRLRATLAFAAVMLGTPLLAPAAADAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGAT 76 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 +VV D+ ++ +K++++V+D+ + ILL+NPTDS + +AV A +A V+ + Sbjct: 77 VVVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKKAGAVVVAV-DANA 135 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 G V S + S N G+++ +Y+AK G +V L GI ER G + A+A Sbjct: 136 NGPVDSFVGSKNFDAGQMSCEYLAKAIGGSGEVAILDGIP-VVPILERVRGCKAALAKFP 194 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 V+ +Q +R L+V +N++ AHP+++ +F+ ND ++GAL A++++GK D+ + Sbjct: 195 NVKVVDTQNGKQERATALSVTENMIQAHPNLKGIFSVNDGGSMGALSAIESSGK-DIKLT 253 Query: 238 GFDGTPDGEKAVN--DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DG P+ A+ + K T AQ P + A G V PVD+KLV K Sbjct: 254 SVDGAPEAITAIQKPNSKFIETSAQFPRDQIRLAIGVALAKKWGANVPKTIPVDVKLVDK 313 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 129/278 (46%), Gaps = 10/278 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGT 83 I + P+ + Q+ + LV+ D Q N +++ V++ + Sbjct: 48 KSYVIGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFLTQQV 107 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 IL ++ ++ + AV IPVI LDR+ T + S ++ DN AG Y A Sbjct: 108 DILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEKFTSFVSGDNRAIAHEAGLYAAS 167 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLL 202 +G V L+G+ +S A ER EGF+ ++ + K ++A QP D+ + K + V +L Sbjct: 168 LLPDGGDVAILEGLPSSSPAIERLEGFKAGISTNPKVKIIAVQPVDWMQDKAVEVFSAML 227 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTP---DGEKAVNDGKLAATI 258 AHPD++ V+ ND A GA A++ AGK V ++G DG P G +AV +G+ AT Sbjct: 228 QAHPDIKLVYTSNDLAAAGAYIAVKQAGKLGQVKIIGTDGLPGPSGGIRAVAEGQWTATY 287 Query: 259 AQLPDQIGAKGVETADKVLKG--EKVQAKYPVDLKLVV 294 A+ ++ A K+L V V + + Sbjct: 288 VYP--TGAAEALDLAKKILIDCASSVPRLVTVPTQRID 323 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 141/300 (47%), Gaps = 12/300 (4%) Query: 1 MNMKKLATL----VSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKE-ADK 54 MNM K A L V + +A A A AK IA +V +LN + V D A+ A Sbjct: 1 MNMTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALA 60 Query: 55 LG-YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 G L VLD + + + ++ P D DA ++ A A IPV Sbjct: 61 DGTATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGS 120 Query: 114 DRQATKGE-VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 + +K E ++I S++V G++ + KAG+ AKV+ L+G+ G SA +R EG Sbjct: 121 NTVVSKTELYDAYINSNDVEAGEMLAKAVIDKAGKDAKVVVLEGMLGQSAQVQRLEGINN 180 Query: 173 AVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG 230 + + +L A++ R + + +M+N LT+H D VQ V A+NDEMA+GA+ ++ G Sbjct: 181 VLKQNSGVTILEQNTANWSRAEAITLMENFLTSHGDQVQGVLAENDEMAVGAIEGIRNHG 240 Query: 231 --KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 + V G DG D +AV G+ +I Q ++ A L G+ + + V Sbjct: 241 LDPKKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQGAIDLALSKLVGDTYKPRAKV 300 >UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FY95_ACICJ Length = 329 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 4/261 (1%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKI 85 TIALV +PF+++++ GA EA KLG +L+ S +P ++ +Q L + Sbjct: 36 KTIALVPGIATDPFYITMQHGAAAEAKKLGLHLIWQGGSSFSPETQIPALQALLAKHPAA 95 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKK 144 LL+ PT+ A+ N ++ A IPVI++D + ++ S I S+NV GG A IA Sbjct: 96 LLVAPTNEKALINPIRQFIAAGIPVISVDTTISDTAILKSRITSNNVQGGASAARAIAGF 155 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLT 203 A V + G S R +GF + +K V+A + D K Q LL Sbjct: 156 AHGKGDVAVINVKPGISTTDARQKGFLAQMKHYKGMKVVAIEYDDDSPTKAFTEAQLLLL 215 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 +P ++ +FA N G +A+ AGK V VVG+D P K + G ++ I Q P Sbjct: 216 KYPHLKGIFATNVFSGEGVGKAVVAAGKKGKVDVVGYDAEPGEVKLLKQGVISTLIVQRP 275 Query: 263 DQIGAKGVETADKVLKGEKVQ 283 + G GV+ A +L G+ Q Sbjct: 276 AEEGRLGVKYAYDILTGKSAQ 296 >UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=C6C3I7_DICDC Length = 311 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 149/289 (51%), Gaps = 3/289 (1%) Query: 3 MKKLATLVSAVALSA-TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 MK + L++A SA +++A+A K TI ++V++L+NP++ S GA K+A +LGY V Sbjct: 1 MKLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTV 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 L + K+ + + + ++++ DS A A+K A A IPV+ ++R+ + Sbjct: 61 LSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREIPVDD 120 Query: 122 VV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 V I +N G + +K GE K EL + R + F Q + + Sbjct: 121 VALVQITHNNFQAGSDVANVFVEKMGEKGKYAELTCSLADNNCVTRSKSFHQVLDQYPGM 180 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239 +A Q A I G +M ++L AHPDV+ V N +ALGA+ AL+ AG++DV+VVG Sbjct: 181 ASIARQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAAGRNDVVVVGI 240 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 DG+ D AV +G L AT+ I A+GV D ++ AK V Sbjct: 241 DGSNDERDAVKEGSLKATVMLQAQAIAAQGVTDLDNFIQKGAKPAKQRV 289 >UniRef50_Q89VC4 ABC transporter sugar-binding protein n=3 Tax=Bradyrhizobium RepID=Q89VC4_BRAJA Length = 314 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 13/304 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVV 61 M+KL L++ +A++ + A +V +NNPFF +DG K A +LG V Sbjct: 5 MRKL--LLAGIAVAMMATPAFAANYRFVIVPKAMNNPFFDFARDGCLKRAKELGNIECVY 62 Query: 62 LDS-QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 ++ PA + +QD + L I+ D A+ +++ A A IPVIT D A Sbjct: 63 KGPVEHEPATQAQIIQDFVTQKVDGLAISVADVAAMTKSIEAATAAGIPVITFDADAPGS 122 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + +++I ++N G G + K +G K + G G ER +G ++A+ K+ Sbjct: 123 KRIAYIGTNNKEFGVALGKQLVKMRPDGGKYAMVSGGPGAKNLAERVDGVREALKGSKWT 182 Query: 181 VLASQP--ADFDRIKGLNVMQNLLTAHPDVQAV--FAQNDEMALGALRALQTAGKSDV-- 234 +A P + D + M ++ TA PD+ A+ A +A + K D+ Sbjct: 183 EVAGSPTFCNDDPALAVQQMTDMRTATPDLAAIVPIGGWPMFAPEGFKAFASRNKKDIDS 242 Query: 235 ---MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 +V D + + DG A + Q P ++G K ++T + KGEKV L Sbjct: 243 GKFTLVVADTLKMQLELLRDGYANALVGQRPFEMGEKAMDTLLAIKKGEKVPEIVYTGLD 302 Query: 292 LVVK 295 LV K Sbjct: 303 LVTK 306 >UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J068_9BACL Length = 330 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 132/274 (48%), Gaps = 4/274 (1%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QNNPAKELANVQDLT 79 A+ + I L+ +P++ ++ GA + A+K G ++ +NN ++L ++ Sbjct: 47 ASGEPRYHIVLIEQERYHPYWEMVEKGAAEAAEKYGIDIEFTGPVRNNMEEQLNLLEKAI 106 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGD 139 +++ + + + A + IPV+T+D A + ++++ +DN+ G+ G Sbjct: 107 AARVDAIIVQGLNEERFTPVIDKAVRRGIPVVTIDTDAPNSQRLTYVGTDNLAAGERLGR 166 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVM 198 + + G K+ + G + +R +G ++ VA H ++ + ++ ++ + Sbjct: 167 LVVETTGGIGKIGVIIGSDQAANQLQRLDGLKKIVAEHEGLEIVDVRSSNISHMEAIQQA 226 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 N+L HP++ + + ALG L+A + + D+ ++GFD + +A+ G++ AT+ Sbjct: 227 ANMLRNHPEITIMVGTSATDALGVLQAAK--NRDDLTIIGFDNQKETLEAIRKGEIEATV 284 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 AQ P +G V + G+ ++ Y ++K+ Sbjct: 285 AQQPFLMGETAVRLLYEHFGGQALKKAYFTEVKV 318 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 149/308 (48%), Gaps = 18/308 (5%) Query: 4 KKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPF-----FVSLKDGAQKEADKLGYN 58 K + + L A V + AK I + V + ++ + + + K A +A + Sbjct: 6 KIMRLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDIE 65 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 V+ + ++ +K++ +V+DL ++G L+I P + + ++ A I + +DR+ Sbjct: 66 FFVV-ASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDRELA 124 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 IA DN G++ ++AK+ V+ ++G+ ++R + F +A + Sbjct: 125 HPAQNVFIAGDNAGLGRVGAQWLAKEMSGKGNVVVIEGLQ-IPINKQRVDAFNDVIAGYP 183 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 +L SQP D+ K L+VM+N L HP + AV+ Q+D+M G L+A++ +G++D+ V Sbjct: 184 NIKILDSQPGDWSTQKALSVMENFLQKHPKIDAVWCQDDDMLKGVLKAIEESGRTDIKTV 243 Query: 238 -GFDGTPDGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGEKV------QAKYPV 288 G G+ D + + G + AT+ P I + G+ A +K EK+ ++ + Sbjct: 244 LGGAGSKDIIEMIQSGNKMVRATVTYSPSMIAS-GIALAVHGVKHEKLGYLYHEPSRVIL 302 Query: 289 DLKLVVKQ 296 LV K+ Sbjct: 303 GADLVTKE 310 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 8/269 (2%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + + + + Q A++LG L + D+Q ++ ++ +G ++ Sbjct: 48 VVGFAQIGAESEWRTANTRSIQDTANQLGVELALSDAQQQQENQIKAIRSFIAQGVDVIG 107 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQAT--KGEVVSHIASDNVLGGKIAGDYIAKKA 145 ++P QA IP+I LDR A I SD V G+ A +A+ Sbjct: 108 VSPVVETGWDEVFAEVKQAGIPLILLDRNANVPDDLYSVRIGSDFVEEGRRACGEMARLL 167 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA 204 ++ L+G G++ RG GFQ+ + ++ +++ SQ DF R +G M LL Sbjct: 168 DGQGAIVVLEGTQGSAPMIGRGTGFQECLQSYPALHIIDSQSGDFIRARGKEEMAALLQK 227 Query: 205 HPD-VQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 H + + VFAQND+MALGA+ A++ G D+ +V D +A+ DGKL ATI Sbjct: 228 HGNSIDGVFAQNDDMALGAIEAIEEYGLRPGVDIKIVSIDAVRAAFEAMIDGKLNATIEC 287 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVD 289 P +G TA + G V+ D Sbjct: 288 NP-LLGPLFFATALNLANGIPVEKWIKPD 315 >UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional regulator, putative n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMJ9_9PROT Length = 307 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 141/300 (47%), Gaps = 8/300 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAK---DTIALVVSTLNNPFFVSLKDGAQKEADKL-GYN 58 MKK+ + ++ L++ ++A + K TIA TLNN + + +K K Sbjct: 1 MKKIFIFIVSILLASILNAGELDKSKTYTIAFAQDTLNNDYRLKQVKEVEKALLKYPNIR 60 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + D++ + + ++ ++D +G +L+ +P D D+ + A ++NIPV+ + R+ Sbjct: 61 FIYSDAKASASMQVKQIEDFISQGVDLLMTSPYDEDSTRQVISKAYKSNIPVVLVSRRVK 120 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + S+I +N K A Y+ KK V+ L+G+A T+ R R EGF + V + Sbjct: 121 GNDFTSYIHPENRQIAKDAAKYLVKKMNYKGTVLLLKGVAKTNVERMRTEGFFEVVNKYP 180 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMV 236 + + A++ R + + LL+A AV +Q+D M +G + G S ++ Sbjct: 181 NIKVIERTANYLRRDAIIEVDKLLSAGQKFDAVMSQSDSMLVGVRMVFKKYGIKPSSLVT 240 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 VG D + A+ DG+ ++ + + A K+L GE V + +D + ++ Sbjct: 241 VGIDYIKPAQDAIRDGEQNSSFVYS--LCAKESADIAIKILSGESVAKEIKLDTNQITRK 298 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 9/278 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKI 85 TI +V N F+ + DGAQK A+ G + S++ +++++ ++ Sbjct: 45 TIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETAISTNPDA 104 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++ PT +DA+ ++ A + IPVI +D A VS + SDN G+ + D +AK Sbjct: 105 IVLAPTVADALVPGIERAMDSGIPVIIIDSMANTDNYVSFLGSDNYTIGQRSADELAKAL 164 Query: 146 GEG-----AKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVM 198 E KV + ++G + R GF + V++ + A +N+ Sbjct: 165 EEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEAYPDIEVVSVRDAMGQVGNTINIT 224 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 +LLTA+PD+ ++A N +RAL G++D+ V D + + +G L + + Sbjct: 225 LDLLTAYPDLDGLYANNQMTGDDMVRALDMQGRNDLAAVAVDASAQEIWGLENGYLDSVL 284 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q P +G GV A G + + ++ + Sbjct: 285 VQQPWVMGYAGVAYAVMARNGVPLAKNVDTGILVITPE 322 >UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG6_9FIRM Length = 331 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 81/271 (29%), Positives = 137/271 (50%), Gaps = 8/271 (2%) Query: 30 ALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLIN 89 VV + + F+ +++DG + +A +LG +V D++ +P VQDLT +G + + ++ Sbjct: 55 GFVVGSFEHVFYQTIRDGIESKAKELGMEAIVTDAELDPNIATNKVQDLTAQGCEAIALS 114 Query: 90 PTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGA 149 D+ V A++ A+ + + T D + + +DN GG++ G + K + +G Sbjct: 115 CNDAAGVKPAIENADAEGVAMFTFDCSTDSEAINCFVGTDNYKGGQLGGQELLKYSEDGD 174 Query: 150 KVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQ 209 V + S+ +R G + V+ D K +M+N+LTA+PD+ Sbjct: 175 TVGII-CYPTASSCLDRQNGALDVLKDEDRTVVYDNDYQGDANKAQEIMENMLTANPDMA 233 Query: 210 AVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND----GKLAAT-IAQLPDQ 264 AVF D A GAL A++ AG SD ++GFDG P+ ++A++D GK + IAQ P Sbjct: 234 AVFCVGDPAATGALAAIKAAG-SDCKIIGFDGNPEAKEAISDTEGNGKWWVSEIAQNPTL 292 Query: 265 IGAKGVETADKVLKGEKVQ-AKYPVDLKLVV 294 IG VE K L KV A+ P+D ++ Sbjct: 293 IGETIVEQMQKYLDEGKVDAAEIPIDPYVID 323 >UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YA80_DICT6 Length = 338 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 138/304 (45%), Gaps = 17/304 (5%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M+K+ + + S + +A++ ++ +P++ ++ G ++ A LG Sbjct: 1 MRKILVAILIILFPLIFSIGYSKEIHVAVIGKSV-HPYWAEVELGVKQAAKDLGVKATFF 59 Query: 63 DSQ-NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 Q + +++ ++ G + I P+D A+ ++ A IPVITLD A + + Sbjct: 60 VPQKEDIPAQISQMESFIAMGVDGIAIAPSDPTAIAPTIEKAMAKGIPVITLDTDAPQSK 119 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + +I +DN GKIAG + G +G KV G + ER GF +A++K Sbjct: 120 RLVYIGTDNYSAGKIAGMVMNDLLGIKGGKVAIGTGSLTAMNSLERIRGFMDGIASNKRI 179 Query: 181 VLASQPADFDRI---KGLNVMQNLLTAHPDVQ---AVFAQNDEMALGALRALQTAGKSDV 234 V+ ++PA D + + + + L +PD++ V+A N A V Sbjct: 180 VVVTKPALCDFEDTGRAVTLAEQALLTYPDLRGFFGVYAFNGPAAA--KAVKAAGKVGQV 237 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG------EKVQAKYPV 288 ++V FD T + + + +G ++AT+ Q P +G K VE K+ + +++ A + Sbjct: 238 LIVCFDTTAEHMQLIKEGVISATVGQRPYMMGYKSVEVLTKMAQKGVDATLKELPANRII 297 Query: 289 DLKL 292 D + Sbjct: 298 DTGV 301 >UniRef50_A8L4W4 Periplasmic binding protein/LacI transcriptional regulator n=15 Tax=Bacteria RepID=A8L4W4_FRASN Length = 363 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 131/289 (45%), Gaps = 17/289 (5%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLT 79 + T+ L+ + NPFFV ++DGAQ+ A + L+ + A +++ ++++ Sbjct: 53 GSGGNPTVGLITKSYTNPFFVKMRDGAQQAAREQKVELLTATGRFDGDYASQVSAIENMV 112 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAG 138 G + +LI P DS A+ A++ A + VI LD V + ++DN G + G Sbjct: 113 AAGARGILITPNDSKAIVPAIEQARHRGVLVIALDVPTDPESAVDALFSTDNFKAGILIG 172 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAA--RERGEGFQQAVAAHKFNV-----------LASQ 185 +Y G+ I ++ R GF A V + S+ Sbjct: 173 EYARAAMGDTPARIATMDVSSHITGGGLLRHNGFLVGFGALDVTVSETQQATPPSVVCSR 232 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDG 245 + D+ KG M + L PD+ V+A N+ A GA AL AGK+DVM+V DG G Sbjct: 233 DSKGDQAKGRTAMADCLRTDPDINLVYAVNEPAAFGARTALDAAGKADVMIVSIDGGCTG 292 Query: 246 EKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQAKYPVDLKLV 293 +AV DGK+AAT Q P ++ +GV +K G KV L+ Sbjct: 293 VRAVRDGKIAATSQQYPLKMAEQGVAAVVDYVKDGTKVSGYVDTGTTLI 341 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + + ++ +++ F L+ + A + L D Q K+L+ VQ +++ Sbjct: 23 VGVSIAQMDDVFLSRLRGYLIEHAKQYPDMTLQFEDGQGAVDKQLSQVQSFINGKVDVII 82 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATK---GEVVSHIASDNVLGGKIAGDYIAKK 144 +NP D+ N A +A +P+I L+R + G+ +S+I SD + G++ Y+A Sbjct: 83 VNPVDTQGTKNMSDAARKAKVPLIYLNRMPSDSKMGDGISYIGSDEIEAGRLQMGYLADM 142 Query: 145 AGE--GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNL 201 + + ++G+ A R R +G ++ +A H +V+ A + R G+N+M N Sbjct: 143 VKDRKNVNIAIMKGLLSNDATRFRTQGAKEVIAKHPNMHVVMEDTAKWMREDGMNLMNNW 202 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATI 258 + + + A DEMA+GA A+++ G D++V G DG P+G +A+ G L T+ Sbjct: 203 ILTGQKIDILSANADEMAIGAAMAIKSNGLNIGKDILVGGTDGGPNGLQAIKSGLLTVTV 262 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q ++ A+K KGE ++ + +LV Q Sbjct: 263 FQDAKSQAFGAIDMAEKAAKGETLKDINFIPFQLVTPQ 300 >UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7 Tax=Burkholderia RepID=B2SY92_BURPP Length = 317 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 144/271 (53%), Gaps = 6/271 (2%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 I + LNNP+FV+++ A +G +VV D+ ++ +K++++V+D+ + ILL Sbjct: 42 KIGMTFQELNNPYFVTMQKALNDAAASIGATVVVTDAHHDVSKQVSDVEDMLQKKIDILL 101 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 +NPTDS + +AV A +A + V+ + G V S + S N G++A +Y+AK G Sbjct: 102 VNPTDSTGIQSAVTSAKKAGVVVVAV-DANANGPVDSFVGSKNYDAGEMACEYLAKSIGG 160 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAHP 206 +V L GI ER G + A+ A ++ +Q +R L+V +N++ AHP Sbjct: 161 SGEVAILDGIP-VVPILERVRGCKAALAKAPGVKLVDTQNGKQERATALSVTENMIQAHP 219 Query: 207 DVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN--DGKLAATIAQLPDQ 264 +++ VF+ ND ++GAL A++++GK D+ + DG P+ A+ + K T AQ P Sbjct: 220 NLKGVFSVNDGGSMGALSAIESSGK-DIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPAD 278 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + A G V PVD+K++ K Sbjct: 279 QVRIALGIALAKKWGANVPKTIPVDVKMIDK 309 >UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Actinomycetaceae RepID=C2KRR4_9ACTO Length = 326 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 16/301 (5%) Query: 10 VSAVALSATVSANAMA----------KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 ++ ++L+A S+ A + I LV + F+ S+K GA ++ +LGY + Sbjct: 13 IACLSLTACGSSPASSDGKSADAKSNSKKIILVSKGFQHTFWQSVKKGALEKGKELGYEV 72 Query: 60 VVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + +N A ++L +++ + + DS A ++ A IPVI D Sbjct: 73 EFIGPKNETAVTEQLDQLKNALNAKPAAIGLAALDSKAAEPILQQIKNAGIPVIAFDSGV 132 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 ++ + +DN G A + +A+ G V + T+ + R GFQ + H Sbjct: 133 DSDIPLTTVQTDNRTAGAKAAEKLAQLMGNKGTVGIVCHGQATTTGKGRCFGFQDWMKEH 192 Query: 178 --KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDV 234 +L Q AD +R K + + ++ ++ DV A++ N+ A G L+ ++ AGK + Sbjct: 193 APDIKLLQEQWAD-ERGKAADAAKAIVKSNTDVTAMYGSNEVTAAGVLQGVKEAGKMGQI 251 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +VGFD A+ G A I Q P ++GA+ V ADK +KGE ++ Sbjct: 252 TIVGFDSGKAQIDAIKSGDEAGAITQAPVKMGAETVAAADKAIKGESLEKIIDSGFAWYD 311 Query: 295 K 295 K Sbjct: 312 K 312 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 140/280 (50%), Gaps = 12/280 (4%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRG 82 ++ I ++V TL+NP++V++K+ + A ++G ++ V+ + + + +L ++ + + Sbjct: 48 GQERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKK 107 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-------VSHIASDNVLGGK 135 +++ P D + + A++ IPV+ + ++ + I + G+ Sbjct: 108 YDGIIVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGLKQAGAVMDGWITATFKDQGR 167 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL 195 + + +A+K G++V ++GI G ++ R EG + ++A + ++DR + Sbjct: 168 LCAEDMAEKLPSGSEVAIIEGIPGAGQSKARREGASEGFEKAGLKLVAVEAGNWDRNRAY 227 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 ++ NL+ AHP ++ ++ ND MAL A+ AL+ AG V V G D P+ +A+ G+LA Sbjct: 228 DITTNLVKAHPQLKGIYCANDVMALAAVDALEVAGIEGVTVYGTDFIPEAAEAIKSGRLA 287 Query: 256 A--TIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 T +Q G V T + K E + K V + LV Sbjct: 288 GSTTFSQAAWTRGTL-VYTLKLIKKDEDLPEKLSVPITLV 326 >UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic component n=4 Tax=Proteobacteria RepID=Q7MCP2_VIBVY Length = 318 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 138/302 (45%), Gaps = 11/302 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M+M+ LA V A+ S +SA+ I +VS L PF+ + G + EA +LGY V Sbjct: 1 MDMRHLAFCV-ALFFSPWLSASQQ----IVYMVSDLRIPFWQIMWGGIENEAKQLGYEAV 55 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 VL ++N+ EL N+ ++++PT+S A +KMA QANIPV+ D G Sbjct: 56 VLSAENDAKTELENIIKAIALKPDGIILSPTNSSAAVTILKMAEQANIPVVISDIGTEGG 115 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAG----EGAKVIELQGIAGTSAARERGEGFQQAVAA 176 VS+I SDN G +A + +V + ER EGF +A Sbjct: 116 TFVSYIESDNFSGAFQLAQILAAAMKAKGWQNGEVGVVAIPQKRKNGIERTEGFVEAAKQ 175 Query: 177 HKFNVLAS-QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDV 234 + A Q DF + Q +L H ++A++ Q + AL A+ + G + V Sbjct: 176 QGMRIAAIKQQKDFSYQETFIFTQTMLREHRKIRAIWLQGSDRYQAALDAIDSLGQRDKV 235 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +++ FD P+ + +L + Q P +G + + + + L G V + +++ V Sbjct: 236 LLICFDAEPEFIDMIRSQQLVGSGMQQPFLMGERAMNSLHQYLLGHTVAKEQQLEVLAVS 295 Query: 295 KQ 296 Q Sbjct: 296 SQ 297 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 212 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 126/301 (41%), Gaps = 18/301 (5%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL---GYNL 59 M K L + + L+ + + + TI + + + + K A+ L Sbjct: 1 MTKYYWLAALLTLTLSSCSQGGKRYTIGVSQCSEDI--WRE-KQNAELRMGAYFHDNVEL 57 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + ++ +++ + L G +L++ P + + A+ A IPVI +R+ Sbjct: 58 KFAAAYDSDERQVQQIDSLMNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGS 117 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA-AHK 178 + + I++DN G + G+YI + V+E++G+AG+S A ER GF A+ Sbjct: 118 QKYTAFISADNYEMGHVMGEYIVSRLHGKGNVLEIKGLAGSSPAIERHNGFMDAIKDEPG 177 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGKSDVMV 236 V+ S D+ + L A+ V VF ND A+GA AL + Sbjct: 178 IKVVGSLQGDWTEATACQKSKEWLAANEGVPVDLVFGANDRTAMGAREALGE----KPLY 233 Query: 237 VGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 G DG P G + V D L A+ G + ++ A ++L+G+ + + + LV Sbjct: 234 CGIDGLPGKNGGIQLVRDSLLDASFIYPTH--GDQLMDLAIRILEGQPYEKETMLMSALV 291 Query: 294 V 294 Sbjct: 292 T 292 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 15/303 (4%) Query: 4 KKLATLVSAVALSATVSANAMAKD---TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 + +A L+ AL+ S N+ A D T+ + + + + A G NL Sbjct: 6 RLIAGLLVGAALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLK 65 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA--- 117 D+Q ++ ++ + ++ +P + A A IPVI DR Sbjct: 66 FSDAQQKQENQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVK 125 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGA---KVIELQGIAGTSAARERGEGFQQAV 174 V+ I SD + G+ AG ++ ++ A + ELQG G++ A +R G + + Sbjct: 126 DTSLYVTMIGSDFLEEGRRAGRWLEERYKNEAGPINIAELQGTVGSAPANDRHAGLMEVI 185 Query: 175 A-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG-- 230 KF ++ASQ DF G VM+ + + V+A ND+MALGA++A++ AG Sbjct: 186 KNDPKFKIIASQSGDFTLAGGKQVMEAFAKTYGKQINVVYAHNDDMALGAIQAMEEAGIK 245 Query: 231 -KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 DV VV FD T G +A+ GK+ + P +G + + V+ G+++ + + Sbjct: 246 PGKDVSVVSFDATKGGFEAMIAGKINVDVECSP-LLGPQLMTAVKDVVAGKQLPKRIVTN 304 Query: 290 LKL 292 + Sbjct: 305 ETV 307 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 143/312 (45%), Gaps = 19/312 (6%) Query: 1 MNMKKLATLVSAVAL-----SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL 55 MN++K +++S +AL + + A+A + +AL++ T + ++ G QKEA Sbjct: 1 MNLRK--SILSCLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAAD 58 Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 G + V + + ++ V+ + ++++ P DS A+ +++ +QA IP++ + Sbjct: 59 GLKVDVKVTNYDANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNS 118 Query: 116 QAT---KGEVVSHIASDNVLGGKIAGDYIA-----KKAGEGAKVIELQGIAGTSAARERG 167 +++ G+ A + K G+ KVI + G GT +R Sbjct: 119 MPDQKYSRYWKVFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQRY 178 Query: 168 EGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRA 225 +GF + + V+ +QPAD+D +K L T DV+ V+ +ND G + A Sbjct: 179 QGFVDGLKKNAPGIEVVGAQPADWDAVKAEAAASALFTQFKDVKGVYTENDSQLRGVVTA 238 Query: 226 LQTAG--KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ 283 Q G S +++VG G +A++ GK AT+ Q P GA + A ++ G+ + Sbjct: 239 AQRLGLEPSKLVIVGHGCDAGGVEAISAGKAYATVEQSPFDDGAYAAKAALELATGKTPR 298 Query: 284 AKYPVDLKLVVK 295 A + + K Sbjct: 299 AVQYLPNPIATK 310 >UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6Q1_9FIRM Length = 365 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 146/329 (44%), Gaps = 38/329 (11%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKD-------------------TIALVVSTLNNPFF 41 M +K+ ++ A++A ++ T+ + + Sbjct: 1 MKKRKVLAVLLCAAMTAALAVGCGGSKGSDSSDKSSDSSSSSDDVITVGFSQVGAESDWR 60 Query: 42 VSLKDGAQKE-ADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAV 100 + + + + GY+L+ D+Q ++ +++ + +L+ P + Sbjct: 61 TANSQSMKDTFSKENGYDLIFDDAQQKQENQITAIRNFIQQEVDYILLAPVTETGWDTVL 120 Query: 101 KMANQANIPVITLDRQATKGE---VVSHIASDNVLGGKIAGDYI---AKKAG---EGAKV 151 + A A+IPVI +DR + + I +D + G+ A +++ A+ G + Sbjct: 121 QEAKDADIPVIIVDRMVDVSDDSLYTTWIGTDALCEGRKAAEWLNGFAEAKGIAASDIHI 180 Query: 152 IELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 ++QG G++A R +G ++ V + ++++A Q +F + KG VM+++L + ++ V Sbjct: 181 ADIQGTIGSTAQIGRTKGLEEGVDKYGWDLVAQQTGEFTQAKGQEVMESMLKQYDNINVV 240 Query: 212 FAQNDEMALGALRALQTAGKS--------DVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 + +ND A GA+ A++ AGK+ ++MV+ FD T G + V DGK+ + P Sbjct: 241 YCENDNEAFGAIDAIEAAGKTVGSDIANGEIMVISFDTTHAGLQDVLDGKIECDVECNPL 300 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKL 292 G + E K+ GE + VD ++ Sbjct: 301 H-GPRAEELIKKLEAGEDIDKLNYVDEEI 328 >UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus RepID=A7NNR8_ROSCS Length = 445 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 9/270 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 T+ V++ F+ L+ G + A G ++ D++ ++ V DL R L+ Sbjct: 6 TLGCVLNDARFTFWSILRHGVRARAADHGVTVIDQDART-VEAQVEMVADLLRRRVHALI 64 Query: 88 INPT-DSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 + P ++ A +++A A +PVI +D +G V + + SD G + + + G Sbjct: 65 LGPARETRAFAQHLELARLARVPVIEVDGGILEGYVSATVRSDERQGLMRIAELLTARLG 124 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAH 205 E + + G R + A+ ++A D+ R G N+ + L A Sbjct: 125 EQLCIALIAGPHNH-----RADILADALRQWPRIRIMAQAVGDWTRESGRNLTEEWLRAG 179 Query: 206 PDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 + A+FA ND MALGA+ AL+ V+VVGFDG P+ +A++ G + AT+ Q P + Sbjct: 180 QPIDAIFAANDPMALGAVDALKAQNLAGKVVVVGFDGLPEALRAIHSGHMLATVNQEPLR 239 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 IG + V+ A + L+G V+ + +L+ Sbjct: 240 IGRQAVDVALQALRGVPVERQIFTPGELIT 269 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 14/301 (4%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDS 64 LA + +A + I + + P+ ++ A + + D+ Sbjct: 21 LAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFTDA 80 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS 124 + N A+++A+V+ +G +L+I+P ++ + V A Q IPVI LDR+ + Sbjct: 81 RQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQYTM 140 Query: 125 HIASDNVLGGKIAGDYIAKKAGEG----AKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 I +DN L G+ AG+Y A+ E VIEL+G+ G++ +ERG+GF++ +AA+ Sbjct: 141 WIGADNRLIGRKAGEYTARWCREQQRSPCTVIELRGLEGSTPTQERGDGFREGIAANPDV 200 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD--VMVV 237 ++ASQ AD+ + + + L A+PDV V+A ND M + A + G+ ++ + Sbjct: 201 RIIASQNADWLAERADALARVLFEANPDVDVVYAHNDPMGIAAFNVAKEQGRDTDAILFI 260 Query: 238 GFDG---TPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG-EKVQAKYPVDLKLV 293 G D + G +AV GKL T GA+ +E A ++L+ E + +D + V Sbjct: 261 GIDALATSDGGIQAVRQGKLNVTYVYP--TGGAEAIEWALRILEQRETPPREIILDTEEV 318 Query: 294 V 294 Sbjct: 319 T 319 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 119/288 (41%), Gaps = 6/288 (2%) Query: 14 ALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD--SQNNPAKE 71 S V A L+ + +P+++++++GA A K G ++ S + A + Sbjct: 31 VHSLPVPAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQ 90 Query: 72 LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNV 131 + V + GT +++ + A+ VK A +IPV+T+D + +A+ NV Sbjct: 91 IGMVNNAVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGLSPNISDCFLATSNV 150 Query: 132 LGGKIAGDYIAK-KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF--NVLASQPAD 188 Y A G + + S R +GF + ++ + Q ++ Sbjct: 151 GAAAALAKYTADHLMGGKGQYAIVDFNHTASTGIARPKGFMLGMKSYPHIKKMGPIQYSN 210 Query: 189 FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKA 248 D GL + +LT +P ++ +F ND ALG A+Q A + V VVGFD Sbjct: 211 NDVSAGLRIATTMLTQYPHLKVIFGANDRAALGPAEAVQRAH-AKVKVVGFDADLGEIAL 269 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 V G + A+I Q P +G V L G+ + + L+ + Sbjct: 270 VKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRINTPYFLLTPK 317 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 130/314 (41%), Gaps = 26/314 (8%) Query: 3 MKKLATLV-----SAVALSATVSANA----------------MAKDTIALVVSTLNNPFF 41 MKK L+ + V LSA S N+ K I ++ + F+ Sbjct: 1 MKKFTALLVVALMTVVMLSACGSNNSDGSSKSGTDNGGTKASGDKIYIPIISKGFQHQFW 60 Query: 42 VSLKDGAQKEADKLGYNLVVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNA 99 ++K GA+K A + + + K++ +Q + + DS A Sbjct: 61 QAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASVPL 120 Query: 100 VKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAG 159 ++ A A IPVI D ++ +++NV +A D +A+ G ++ + Sbjct: 121 LQKAKAAGIPVIAFDSGVDSDIPITTASTNNVAAAALAADKMAELIGGEGEIGVIVHDQT 180 Query: 160 TSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDE 217 + +R +GF + ++ Q D +K ++ + ++ AHP+++ F N+ Sbjct: 181 SVTGVDRRDGFVNRIKEKYPNIKIVDIQYGGGDHLKSTDLAKAMIQAHPNIKGFFGSNEG 240 Query: 218 MALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKV 276 A+G + A+ K + V+GFD A+ G +A I Q P IG + V+ A + Sbjct: 241 SAVGVINAVTELKKEGQITVIGFDSGKAQIDAIKSGVMAGAITQNPVGIGYETVKAAVEA 300 Query: 277 LKGEKVQAKYPVDL 290 ++GEKV++ Sbjct: 301 IRGEKVESTIDTGF 314 >UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWB0_HERA2 Length = 332 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 15/304 (4%) Query: 6 LATLVSAVALSATVSANAMAKDT---IALVVSTLN--NPFFVSLKDGAQKEADKLGYN-L 59 LA ++ A + A A T + L L + + + ++ A LG L Sbjct: 20 LAGCGASSAPTTAPDAPATGAKTYSDMVLCYPQLGAESDWRTANTASIKETAATLGIKQL 79 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 V D+Q +++ V+ +G ++ + P D + A A IPVI +DR + Sbjct: 80 VFSDAQQKQENQISAVRACIQQGVDVIALPPVVEDGWDAVLTEAKNAGIPVIIVDRSVSA 139 Query: 120 GE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + +HI S+ VL G+ A K G ++EL G G+ AA R +G + + Sbjct: 140 DKSLYSTHIGSNMVLEGERAAAEFNKMMPNGGAILELSGTTGSGAAVGRAKGLRNKL-NS 198 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAH---PDVQAVFAQNDEMALGALRALQTAG--KS 232 ++ SQ +F R + + VMQ LL + D Q +F ND+M +G + L+ AG Sbjct: 199 NITIIDSQTGNFTRAEAVPVMQALLKKYTPGTDFQGIFIHNDDMGIGVIEVLKAAGIKPG 258 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 D+ +V DGT G +A+ DG A + P +G + E A K++ G+ V+ + + + Sbjct: 259 DLKIVSVDGTRGGFQAMVDGWFQADVECNP-LLGPQVFELALKLMNGQPVEPEVITNETV 317 Query: 293 VVKQ 296 + Sbjct: 318 YYPE 321 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 121/256 (47%), Gaps = 9/256 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTK 84 + I + + L P+ +S+ + EA K +V D+ + K+ ++ +L G Sbjct: 40 EYVIGMSQANLYEPWRISMNEEISNEAKKYKNIKIVYKDAGGDTNKQKKDIDELLNSGID 99 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 +L+++ DS+ + V A ++ +PV+ LDR +I DN G+ AG + Sbjct: 100 LLIVSINDSEKLTPVVSKAYKS-VPVVVLDRAVEGYNYSVYIGPDNEKIGREAGKMVVDL 158 Query: 145 AGEG-AKVIELQGIAGTSAARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVMQNLL 202 G +VIE+QG+ + +R +GF++A+ ++ + ++ + + + ++ LL Sbjct: 159 LGNSEGRVIEIQGLLNSHPDIDRSKGFREAIKQCDNIKIVRTVIGEWQKDEAEDKIEELL 218 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT---PDGEKAVNDGKLAATIA 259 ++ +FA ND MALGA +A G +++ ++G DG G V+ G L T Sbjct: 219 KEDRNIDIIFAHNDYMALGAYKAAYKLGINNIKIIGVDGLTGENGGLDLVSRGILQGTFT 278 Query: 260 QLPDQIGAKGVETADK 275 G + V++A Sbjct: 279 CS--TGGKEAVDSALN 292 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKIL 86 I V L N ++ SL +G + D G L S+ + +L+ +++ ++G + L Sbjct: 58 IGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGL 117 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKG--EVVSHIASDNVLGGKIAGDYIAKK 144 L++P + + A++ A I V+ ++ + V ++ DN G + Sbjct: 118 LVSPQTDNNLQPAMETAASRGIAVVNVNDAVIPSATQYVGNVQRDN---GVRVAQWFIDN 174 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLT 203 G KV ++G G AA +R +GF + A F V+AS PA++ R + + +L Sbjct: 175 RPGGGKVAAIEGQPGVFAAGQRTDGFTTTITEAGNFQVVASVPANWSREQAYDAASTILQ 234 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 HPD+ +A ND MALG + A++ A V V G DG PD ++ G L T+ P Sbjct: 235 QHPDLIGFYANNDGMALGVVEAVKAANLQEQVSVFGTDGIPDAYASIRAGDLTGTVDSFP 294 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G +E ++L G+ + L+ Sbjct: 295 VLTGEVAMEVVLRLLAGQGIPRVVATPQALIT 326 >UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LA89_MAGSM Length = 374 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 142/299 (47%), Gaps = 7/299 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEAD-KLGYNLV 60 M+ L +V + A+A + TL+ P+ + + + ++ Sbjct: 69 MRTLPAIVMMTLYALAGLAHAQQPPWRVGFCQDTLDIPWRAAQAMTFSQTLQTDKRFQVI 128 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + D++ N ++ +++ + RG +L+ +P D + + + +PV+ L R+ Sbjct: 129 LSDAKGNTTQQAIDLEHMVERGVHVLVTSPRDGAVLTPVISNIYRQGVPVVLLSRRTLDE 188 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 + IA D+ G+ A Y++K+ E K++ +QG+ S ++R GF Q ++ H Sbjct: 189 NFTTFIAPDDAEIGRQAARYLSKRLNEKGKILVIQGLGSASTTQQRTVGFIQELSLHPHM 248 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMVV 237 ++A A++ + + +M+++L A++ +D MALGA+ AL+ AG + + +V Sbjct: 249 QIVAQPFANYKKEMAILIMESILAQKLPFDAIYVHSDAMALGAILALKRAGIDPTKLPIV 308 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 D T G +++ G++ A I P+ + +G+ ++L G+ V V LV ++ Sbjct: 309 SIDYTRAGRESLRKGEIDA-IFTYPNGV-KQGITAVKRILAGQPVNKFQTVPSTLVTQE 365 >UniRef50_B0K1M1 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Clostridia RepID=B0K1M1_THEPX Length = 336 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 134/280 (47%), Gaps = 13/280 (4%) Query: 23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRG 82 TI L++ ++NPFF + G + A GYN+ + ++ +N KE + L + Sbjct: 58 TKKTKTIGLIIPDISNPFFPDIARGVEDSAHIYGYNVFLCNTDDNLEKESEYINALKEKY 117 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIA 142 ++ + + +++ + IP++ +DR+ ++ + DN GG IA ++ Sbjct: 118 VDGIIFTSSSIPKHEHIMELVK-SGIPIVIMDRRVDSEDIYG-VFLDNYEGGYIATKHLI 175 Query: 143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ--PADFDRIKGLNVMQN 200 + K+ + G T +A+ER EG+++A+ + +V D+ G+ + Sbjct: 176 DLGHK--KIACITGPLYTKSAKERLEGYKKALVENGMDVDERLIFEGDYKINSGIIGTEK 233 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAG---KSDVMVVGFDGTPDGEKAVNDGKLAAT 257 LL + +V A+FA ND MA GA + +++ G D+ +VGFD + + +L T Sbjct: 234 LLGNNENVTAIFACNDLMAYGAYKTIRSYGYKIPDDISIVGFDDIQ--LSQILEPQLT-T 290 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYP-VDLKLVVKQ 296 I Q +G K+++G+K++ K +L+++Q Sbjct: 291 IKQPAYDMGLAAARMLIKLVEGKKLKKKIINFRPQLIIRQ 330 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKK + ++ ++S +A I TLN FF L + + A + GY L+ Sbjct: 1 MKKRLIGLLLAGVTISMSVSAAEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLITT 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGE 121 D++ + K++A+V+D+ +G L++NP D A ++A +A +P + LD + Sbjct: 61 DARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIALEAP 120 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGA-KVIELQGIAGTSAARERGEGFQQAVAAH--- 177 V++ + ++N + G+Y + G+ I L G G + R + F VA Sbjct: 121 VITRVQANNAKNNNLIGEYAVGQFGDKPMNCIFLSGNQGNLVGQARRDNFLLGVAEAQLR 180 Query: 178 -----KFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGK 231 N L+ ++D+ GL M++++ A D + V+++ D+MALGA+RAL+ A K Sbjct: 181 KYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGDKINCVYSEMDDMALGAIRALKAANK 240 Query: 232 SD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK-VQAKYPVD 289 D V V DG G +AV G+L AT + PD + + +E + G+ + Sbjct: 241 LDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEVIGQYQAGQTSFPDYVYIP 300 Query: 290 LKLVVK 295 L+ K Sbjct: 301 SILITK 306 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 135/279 (48%), Gaps = 10/279 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + ++ P++V+L+D ++ + G D Q + AK++A ++DL +G ++L+ Sbjct: 53 KVGYSGPSMVAPYYVALEDVVKRSVQRYGMQYYTADGQEDVAKQVAAIEDLLSKGIQVLV 112 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIAGDYIAKKAG 146 +NP D AV V A + V +D K S + ++N L G++ G ++A+ Sbjct: 113 LNPLDPKAVVPVVNRAIAEGVVVFIVDSMIDEKAAYTSSVVANNTLNGELLGLWLAETKN 172 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAV--------AAHKFNVLASQPADFDRIKGLNVM 198 E K+ + G G RE+ GF + + A F+++A ++ GL M Sbjct: 173 EALKIAIISGNQGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNNGGLKAM 232 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAAT 257 +++L AHP V + A+ND MALGA + ++ GK + ++GFDG + + GK AT Sbjct: 233 EDILAAHPYVNVLLAENDAMALGAYKIIKQMGKENQITILGFDGQKEAFDMLKTGKFEAT 292 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 P +G +E + L GEKV L+ K+ Sbjct: 293 AQNSPKILGETIIELVARHLNGEKVNKLNYTPSVLISKK 331 >UniRef50_C6P8L1 Transcriptional regulator, LacI family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P8L1_CLOTS Length = 342 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 14/288 (4%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 + S TI L++ + NPFF + GA+ A+ GYN+ + ++ +N KE + Sbjct: 53 AIARSLVTKKTKTIGLIIPDITNPFFPEIARGAEDCANIYGYNIFLCNTDDNAEKENNYI 112 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-EVVSHIASDNVLGG 134 L + ++ + + + + + IPV+ +DR + + + DN GG Sbjct: 113 AVLREKCVDGIIFTSSSIPKYEHIIDLI-DSGIPVVMIDRSIEPKLKNIYGVFLDNYKGG 171 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ--PADFDRI 192 +A Y+ + + + G T +A ER G+++A++ + S DF Sbjct: 172 YLATKYLIELGHR--NIACITGPLYTKSAIERLNGYKKALSDFNIEINNSMIIEGDFKIN 229 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG---KSDVMVVGFDGTPDGEKAV 249 G+ + ++ + DV +FA ND MA G + L+ G D+ +VGFD + Sbjct: 230 SGMVAAEKII-ENKDVTGIFACNDLMAYGVYKTLKKKGYRIPDDISIVGFDDIQ--LSQI 286 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKV-QAKYPVDLKLVVKQ 296 + +L TI Q +G K+++GEKV + + L+ ++ Sbjct: 287 LEPQLT-TIKQPSYDMGLTATRVLIKLIEGEKVRKKVVKFEPSLIERK 333 >UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XH32_NAKMY Length = 350 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 125/281 (44%), Gaps = 4/281 (1%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ-NNPAKELANVQ 76 A +A + + F+++++ G + EA KLG + Q +P + + Sbjct: 55 AAPTKAGKDYNVAFIQGVAGDEFYITMQCGIEAEAAKLGVTVNTQGGQKFDPTLQTPILD 114 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGGK 135 + +LI PTD A+ ++ A A I V+ +D VS ++SDN GG Sbjct: 115 SVVASKPDAILIAPTDVTAMQRPLENAAAAGIKVVLVDTTTEDPSFAVSQVSSDNEGGGA 174 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKG 194 A I K G KV+ + G S R +GF+ AV F+ L Q + D Sbjct: 175 AAFKAIKDKNPNGGKVLVISTDPGISTVDARVKGFEDAVGKDSTFDYLGVQYSHNDPATA 234 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGK 253 ++ L PD+ +FA N A G+ ++ AGKSD + +VGFD P+ KA+ DG Sbjct: 235 AQLVTAALQKDPDIVGIFATNIFSAEGSSTGVKQAGKSDQMTIVGFDAGPNQVKALKDGT 294 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + A +AQ P IG G++ A L G + K ++ Sbjct: 295 VQALVAQQPATIGTDGLDQAIASLDGGTITPKIQTGFTIIT 335 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 13/297 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M K +VSAV+ +A S A T+ + + + + A+ EA+K G L + Sbjct: 1 MWKRLLIVSAVS-AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA---TK 119 D Q ++ V+ +G + I P + +K A A IPV LDR K Sbjct: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEG-AKVIELQGIAGTSAARERGEGFQQAVA-AH 177 ++ + +DN+L GK+ GD++ K+ V+ELQG G S A +R +GF +A+ A Sbjct: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTA---HPDVQAVFAQNDEMALGALRALQTAGK--- 231 ++ SQ DF R KG VM++ + A ++ V+A ND+M +GA++A++ AG Sbjct: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 D++ DG PD KA+ DG+ A++ P + + +K K + K + Sbjct: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTL 295 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 333 6e-90 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 326 5e-88 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 323 4e-87 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 323 4e-87 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 322 8e-87 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 317 2e-85 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 315 1e-84 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 312 9e-84 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 305 1e-81 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 304 2e-81 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 303 4e-81 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 301 2e-80 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 293 7e-78 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 291 2e-77 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 291 3e-77 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 289 1e-76 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 285 1e-75 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 283 7e-75 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 282 1e-74 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 282 1e-74 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 280 5e-74 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 280 5e-74 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 279 5e-74 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 279 8e-74 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 278 1e-73 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 278 2e-73 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 278 2e-73 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 277 4e-73 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 276 6e-73 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 275 1e-72 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 275 1e-72 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 275 1e-72 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 275 1e-72 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 273 4e-72 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 273 6e-72 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 272 1e-71 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 271 1e-71 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 270 3e-71 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 270 3e-71 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 270 5e-71 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 269 5e-71 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 269 7e-71 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 269 7e-71 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 268 1e-70 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 267 3e-70 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 267 4e-70 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 266 4e-70 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 266 5e-70 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 266 8e-70 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 266 8e-70 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 266 9e-70 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 265 1e-69 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 264 3e-69 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 264 3e-69 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 263 5e-69 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 263 6e-69 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 263 6e-69 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 263 6e-69 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 263 7e-69 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 263 7e-69 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 263 8e-69 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 262 1e-68 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 262 1e-68 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 262 1e-68 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 261 1e-68 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 260 4e-68 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 260 4e-68 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 260 5e-68 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 259 8e-68 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 258 1e-67 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 258 1e-67 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 258 1e-67 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 258 2e-67 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 258 2e-67 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 258 2e-67 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 258 2e-67 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 258 2e-67 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 258 2e-67 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 257 3e-67 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 257 4e-67 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 256 5e-67 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 256 6e-67 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 256 8e-67 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 256 1e-66 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 255 1e-66 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 255 2e-66 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 254 3e-66 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 254 4e-66 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 253 4e-66 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 253 5e-66 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 253 6e-66 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 253 6e-66 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 252 7e-66 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 252 7e-66 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 252 9e-66 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 252 1e-65 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 252 1e-65 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 252 1e-65 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 252 1e-65 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 252 1e-65 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 251 2e-65 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 251 2e-65 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 250 4e-65 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 250 5e-65 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 249 6e-65 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 249 7e-65 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 249 8e-65 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 249 8e-65 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 249 9e-65 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 249 1e-64 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 249 1e-64 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 249 1e-64 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 249 1e-64 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 248 1e-64 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 248 2e-64 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 248 2e-64 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 247 2e-64 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 247 2e-64 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 247 3e-64 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 247 3e-64 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 247 3e-64 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 246 5e-64 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 246 6e-64 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 246 6e-64 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 246 7e-64 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 246 8e-64 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 246 9e-64 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 245 1e-63 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 245 1e-63 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 245 1e-63 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 245 1e-63 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 245 2e-63 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 244 2e-63 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 244 3e-63 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 243 6e-63 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 243 7e-63 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 242 7e-63 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 242 8e-63 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 242 8e-63 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 242 1e-62 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 242 1e-62 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 242 1e-62 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 242 1e-62 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 242 1e-62 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 242 1e-62 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 241 2e-62 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 241 2e-62 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 241 2e-62 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 241 3e-62 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 241 3e-62 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 241 3e-62 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 240 3e-62 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 240 4e-62 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 240 4e-62 UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Ba... 240 5e-62 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 240 5e-62 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 239 7e-62 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 239 8e-62 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 239 8e-62 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 239 1e-61 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 239 1e-61 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 239 1e-61 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 238 1e-61 UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc... 238 1e-61 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 238 2e-61 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 237 3e-61 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 237 3e-61 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 237 3e-61 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 237 3e-61 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 237 4e-61 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 237 5e-61 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 236 5e-61 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 236 5e-61 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 236 6e-61 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 236 7e-61 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 236 8e-61 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 235 1e-60 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 235 1e-60 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 235 1e-60 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 235 1e-60 UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_... 235 1e-60 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 235 2e-60 UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional... 234 2e-60 UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesor... 234 2e-60 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 234 2e-60 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 234 2e-60 UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon... 234 2e-60 UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coproco... 234 3e-60 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 234 3e-60 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 234 3e-60 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 234 3e-60 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 234 3e-60 UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding prot... 234 4e-60 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 233 4e-60 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 233 6e-60 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 233 7e-60 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 233 7e-60 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 232 7e-60 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 232 7e-60 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 232 8e-60 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 232 1e-59 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 232 1e-59 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 232 1e-59 UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri... 231 2e-59 UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette tran... 231 2e-59 UniRef50_C1D5Z3 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 231 2e-59 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 231 2e-59 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 231 3e-59 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 231 3e-59 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 231 3e-59 UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional... 230 4e-59 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 230 4e-59 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 230 5e-59 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 230 5e-59 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 230 6e-59 UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di... 229 6e-59 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 229 7e-59 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 229 7e-59 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 229 7e-59 UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional... 229 8e-59 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 229 8e-59 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 229 1e-58 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 228 2e-58 UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_Q9K692 Sugar ABC transporter (Sugar-binding protein) n=... 227 2e-58 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 227 3e-58 UniRef50_C2DYY0 Periplasmic sugar-binding protein n=8 Tax=Lactob... 227 3e-58 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 227 4e-58 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 227 5e-58 UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional... 226 5e-58 UniRef50_Q89VC4 ABC transporter sugar-binding protein n=3 Tax=Br... 226 5e-58 UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 226 7e-58 UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional... 226 8e-58 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 226 8e-58 UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional... 226 9e-58 UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional... 226 1e-57 UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding... 225 1e-57 UniRef50_C0Z4C9 Putative ABC transporter substrate binding prote... 225 2e-57 UniRef50_A7NMH5 ABC-type sugar transport system periplasmic comp... 225 2e-57 UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verruco... 225 2e-57 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 224 2e-57 UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen... 224 2e-57 UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional... 224 2e-57 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 224 2e-57 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 224 3e-57 Sequences not found previously or not previously below threshold: >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 141/275 (51%), Positives = 196/275 (71%), Gaps = 2/275 (0%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV 80 I + +STLNNPFFVS+++G ++ A K V+ D+QN+ + + V+DL Sbjct: 44 TKTDGDMKIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVEDLIT 103 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY 140 +G +++INP DS A+ +V+ AN+ANIPVI +DR + +GE+VS IAS+NV GGK+AG+Y Sbjct: 104 QGVDLIVINPVDSTAIATSVEKANEANIPVICVDRGSDQGELVSFIASNNVEGGKLAGEY 163 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQN 200 I +K GE A+VI+L+GI G S+ RERGEGF++A K N+LASQ A+FDR +G+ VM+N Sbjct: 164 ILEKVGENAEVIQLEGIPGASSTRERGEGFEEA-TNGKINLLASQTANFDRAEGMTVMEN 222 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 LL AHPDV+AVF QNDEMALGA A++ +GK DV +VGFDG D KAV +G L+AT+AQ Sbjct: 223 LLQAHPDVKAVFCQNDEMALGASEAIKASGK-DVTIVGFDGNEDAIKAVEEGNLSATVAQ 281 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P ++G +ETA K LKGE+V+ L+L+ K Sbjct: 282 KPKEMGKLAIETAIKYLKGEEVEETVDSPLELIKK 316 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 208/293 (70%), Positives = 253/293 (86%), Gaps = 1/293 (0%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKKLATL+SA L++TVS A A+DT+A+VVSTLNNPFFV++KDGA+ A +LGYNL+VL Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVL 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 DSQN+P+KEL+NV+DLT+RG K +LINPTDSDAV NA+++AN++ IPV+TLDR A++G+V Sbjct: 61 DSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGDV 120 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL 182 VSHIASDNV+GG++AG++I +K GE AKVI+L+GIAGTSAARERGEGF AV +L Sbjct: 121 VSHIASDNVVGGEMAGNFIVEKVGEKAKVIQLEGIAGTSAARERGEGFMNAVKGSHMELL 180 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 ASQPADFDR KGLNVM+NLL A+PDVQAVFAQNDEMALGALRA+Q +GK +VM+VGFDGT Sbjct: 181 ASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK-EVMIVGFDGT 239 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DG AVN GKLAATIAQ PD IGA G+ETADKVLKGE+V+ PV LK+V K Sbjct: 240 DDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLKVVTK 292 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 153/306 (50%), Positives = 204/306 (66%), Gaps = 14/306 (4%) Query: 3 MKKLATLVSAVALSATVSAN------------AMAKDTIALVVSTLNNPFFVSLKDGAQK 50 MKK T+ +A+AL + + I L VSTL NPFFVSLK+G K Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 EA K G ++V+D+Q++ AK+ +V+DL +G LLINP DS A+ AV+ AN IPV Sbjct: 61 EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 111 ITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGF 170 +TLDR A G+V + +ASDNV GG++A D+I ++ G+GAKV EL+G+ G SA RERG GF Sbjct: 121 VTLDRSAENGKVETLVASDNVKGGQMAADFIVEQLGKGAKVAELEGVPGASATRERGSGF 180 Query: 171 QQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 + A K NV+A Q ADFDR KGLNVM+NLL +PD+QAVFA NDEMALGA+ A++++G Sbjct: 181 HKT-ADDKLNVIAKQTADFDRTKGLNVMENLLQGNPDIQAVFAHNDEMALGAIEAIRSSG 239 Query: 231 KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 K +++VVGFDG D KAV G ++ATIAQ P+ IG V+ A +L G+KV+ P L Sbjct: 240 K-EILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDILNGKKVEKTIPAPL 298 Query: 291 KLVVKQ 296 KL K+ Sbjct: 299 KLETKK 304 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 138/314 (43%), Positives = 192/314 (61%), Gaps = 21/314 (6%) Query: 3 MKKLATLVSAVALSATVSANAM--------------------AKDTIALVVSTLNNPFFV 42 MK+ +++ ++A V A + VSTLNNPFFV Sbjct: 1 MKRWTAMLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFV 60 Query: 43 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM 102 ++ +G Q+EA KLG + +L+ N+PA +L V+DL + +++NPTDS ++ AV+ Sbjct: 61 AMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAVEQ 120 Query: 103 ANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSA 162 AN+A+IPVITLDR TKG V IAS++V GK+A D + K G +V+ELQG+ GTSA Sbjct: 121 ANRAHIPVITLDRSVTKGNVACFIASNSVEAGKMAADELIKALGGKGQVVELQGVIGTSA 180 Query: 163 ARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 +R +GF + + A V+A Q A+FDR + LNVMQN+L AHP++Q VFAQNDEMALG Sbjct: 181 EADREKGFDEEIGKAPGIRVVARQTANFDRSQALNVMQNILQAHPNIQGVFAQNDEMALG 240 Query: 222 ALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK 281 AL+A+Q AGK ++ +VG DG + V+ G L A IAQ P Q G GVE A K+++GEK Sbjct: 241 ALKAIQEAGKHNIKIVGIDGEKEAVNDVHKGLLYADIAQQPVQEGILGVEYAVKLVEGEK 300 Query: 282 VQAKYPVDLKLVVK 295 V + L LV K Sbjct: 301 VPKQVNSPLHLVEK 314 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 148/307 (48%), Positives = 203/307 (66%), Gaps = 15/307 (4%) Query: 3 MKKLATLVSAVALSATVS-------------ANAMAKDTIALVVSTLNNPFFVSLKDGAQ 49 MKK +++ ++L + + + TI L VSTLNNPFFVSLK G + Sbjct: 1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60 Query: 50 KEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 109 KEA K G ++++D+QN+ +K+ ++V+DL +G LLINPTDS A+ AV+ AN +P Sbjct: 61 KEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVP 120 Query: 110 VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEG 169 V+T+DR A +G+V + +ASDNV GG++A +IA K G+GAKV EL+G+ G SA RERG G Sbjct: 121 VVTIDRSAEQGKVETLVASDNVKGGEMAAAFIADKLGKGAKVAELEGVPGASATRERGSG 180 Query: 170 FQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 F +A K V+ Q ADFDR KGL VM+NLL HPD+QAVFA NDEMALGAL A+ ++ Sbjct: 181 FHN-IADQKLQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVFAHNDEMALGALEAINSS 239 Query: 230 GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 GK D++V+GFDG D ++ D KL+AT+AQ P+ IG E AD +L G+KVQ Sbjct: 240 GK-DILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLATEAADDILHGKKVQKTISAP 298 Query: 290 LKLVVKQ 296 LKL ++ Sbjct: 299 LKLETQK 305 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 207/295 (70%), Positives = 251/295 (85%), Gaps = 1/295 (0%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M MKKL TL+SA LS +VS A A+DT+A+V+STLNNPFFV++KDGA+ +A +LGYNL+ Sbjct: 1 MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 VLDSQN+P+KEL+NV+DLTVRG K +LINPTDSDAV NA+++AN++ IPV+TLDR A++G Sbjct: 61 VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 EVVSHIASDNV+GG++AG +I K G AKVI+L+GIAGTSAARERGEGF AV K Sbjct: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQ 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD 240 +LASQPADFDR KGLNVM+NLL A+PDVQAVFAQNDEMALGALRA+Q +GKS VM+VGFD Sbjct: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS-VMIVGFD 239 Query: 241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GT DG AV G+LAAT+AQ PD IGA G+ETADK+LKGEKV+A PV LK++ K Sbjct: 240 GTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 151/303 (49%), Positives = 199/303 (65%), Gaps = 12/303 (3%) Query: 3 MKKLATLVSAVALSATV-----------SANAMAKDTIALVVSTLNNPFFVSLKDGAQKE 51 MK L A++A + K I L VST +NPFFV+LK GA++E Sbjct: 5 MKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKGAEEE 64 Query: 52 ADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 A K G L+ +D+Q++PAK++A+++DL + K++L+NPTDSDAV AVK AN A IPV+ Sbjct: 65 AQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAAGIPVV 124 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 TLDR GEV SH+ASDNV GGK+A +Y+ +K G V+EL+GI G SAARERG+GF Sbjct: 125 TLDRSVNGGEVASHVASDNVAGGKMAAEYLLEKIGNQGDVVELEGIPGASAARERGQGFH 184 Query: 172 QAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 + K V+ QPADFDR KGL+VM+N+L A+ +V+ VFA NDEMALGA++AL+ AG Sbjct: 185 DVIDQAKDVKVVGRQPADFDRAKGLSVMENILQANKNVKGVFAHNDEMALGAVQALEAAG 244 Query: 231 KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 DV VVGFD T D AV GK++AT+AQ P IG V+ A K++ G+ V PV L Sbjct: 245 MKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGKTAVDAAKKIIDGQPVDKSLPVPL 304 Query: 291 KLV 293 LV Sbjct: 305 DLV 307 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 123/278 (44%), Positives = 183/278 (65%), Gaps = 2/278 (0%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL 78 V+ A + + +STL+NPFFVS+++G Q A K N+ V D+QN+ AK+ +N++DL Sbjct: 40 VTKKAPKDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDL 99 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 + +L+INP DS A+ AVK AN A IPVIT+DR + G+V++ +AS++ GG++A Sbjct: 100 IQKKVDVLIINPVDSSAITPAVKDANDAGIPVITVDRSSDGGKVLTLVASNSTKGGQMAA 159 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVM 198 Y+ +K G+ AK+ ELQGI G SA RERG+GF A K ++++ Q A FDR KGL V Sbjct: 160 KYMIEKLGKDAKIAELQGIPGASATRERGKGF-DGAAKGKLDIVSKQTAGFDRAKGLTVT 218 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 +N+L + D+ +F+QNDEMALGA++A++ AGK + +VGFDG DG KAV G +AAT+ Sbjct: 219 ENILQGNGDIVGIFSQNDEMALGAVQAVKAAGK-KITIVGFDGEADGIKAVKAGDMAATV 277 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 AQ P+++G ++ A G+ V+ L LV + Sbjct: 278 AQKPEEMGRLALQAAYDHFNGKTVKKNVESPLSLVTTE 315 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 182/298 (61%), Positives = 243/298 (81%), Gaps = 6/298 (2%) Query: 3 MKKLA-----TLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 MK+LA L+SA LS + S +A A+D IA+V+ST+NNPFFV++KDGA+ +A +LGY Sbjct: 1 MKRLAHHKVSVLLSAALLSVSTSFSASAQDAIAIVLSTMNNPFFVTMKDGAEAKAAELGY 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 L+ LDSQN+P+KELANV+DLT+RG K +LINPTD+ AV NA++ AN+ANIPV+TLDR A Sbjct: 61 KLIALDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTA 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 G++VSHIASDN+ GG++AG++IA++ G+ AKVI+L+GIAGTSAARERGEGF AV A+ Sbjct: 121 AHGDIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIAGTSAARERGEGFSNAVTAN 180 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 F +L+SQPADFDR KGLNVM+N+L A+ DVQAVFAQNDEMALGALRA++ AGK D++V+ Sbjct: 181 NFELLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGK-DILVI 239 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GFDGT +G AV +L+AT+AQ P+ +GA + TAD++LKG+ V+ PV LK++ + Sbjct: 240 GFDGTDEGIAAVRRQQLSATVAQQPELLGATAIMTADRILKGQVVEKSIPVALKIITQ 297 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 110/281 (39%), Positives = 179/281 (63%), Gaps = 2/281 (0%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 A + K I L ++T NPFFV +KDG QK AD+ G L + D+Q++P ++ +V+ Sbjct: 56 AGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVE 115 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKI 136 +L + ++I+ DSDA+ ++++ N+A IPV T+DR+A GEV+SHI D + G++ Sbjct: 116 NLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEVISHIGYDAIKSGRM 175 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGL 195 AG Y+ G K++E+QGI GT+ A+ R +GF + + + ++A Q ADFDR KG+ Sbjct: 176 AGQYLVDTLGGKGKIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVACQVADFDRAKGM 235 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKAVNDGKL 254 +VM+N+L A+P++ ++A NDEM LGAL A++ AG++D +V +G D D A+ GK+ Sbjct: 236 SVMENILQANPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCDAIDDTLDAMKAGKV 295 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 ATIA+ P +G + TA L+G++V+ +D +LV + Sbjct: 296 DATIAEPPFFLGKAILNTAYDYLEGKQVEPYVILDNQLVTQ 336 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 303 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 147/293 (50%), Positives = 208/293 (70%), Gaps = 5/293 (1%) Query: 7 ATLVSAVALSATVSANAMA-KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 A+++ + + + A + I +VVSTLNNPFFVSLK+GA+K++ +LGY L+VLDSQ Sbjct: 13 ASILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQ 72 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH 125 N+PAKE +N++DL G +L++NPTDSDAV N+V++AN+ANIPVIT+DRQA GEVVSH Sbjct: 73 NDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGEVVSH 132 Query: 126 IASDNVLGGKIAGDYIAKKAGEG--AKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVL 182 IASDN+ GG++A +I + KV+ELQGI G SA RERG+GF + ++ Sbjct: 133 IASDNIKGGELASSFIIDELKNKKDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKLI 192 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 +SQ A+FDR +GL+VM+N++ A D AVFA NDEMALGA +AL+TA K ++VVGFDG Sbjct: 193 SSQAANFDRAQGLSVMENIIQAQSDFDAVFAHNDEMALGAAKALKTANK-KIIVVGFDGD 251 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 D + A+ +++AT+AQ P +G+ +ETA K+ G+ + PV L+L+ K Sbjct: 252 EDAKTAIEKSEISATVAQQPALMGSTSIETAVKISNGQNISKNIPVKLRLITK 304 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 175/310 (56%), Gaps = 14/310 (4%) Query: 1 MNMKKLATLVSAVALSATVSANAMAK------------DTIALVVSTLNNPFFVSLKDGA 48 M K+L ++ + + + V +A+V+ LN+ ++ +++ GA Sbjct: 1 MKGKRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGA 60 Query: 49 QKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 A +LG + VL +++ + + + ++D V+G L++ P +A A + Sbjct: 61 NDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKE 120 Query: 107 NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 IPV+ +D A + S + + N+ GK+ G+YI+KK +G + I ++G+ G ER Sbjct: 121 KIPVVLIDTDANWDKKKSFVGTGNIAAGKLGGEYISKKLKKGDEAIIIRGVPGDRTQDER 180 Query: 167 GEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 226 +G Q+A+ A V+ QPA+ +R K ++VM+NLL HP+++ VF NDEMALGA++AL Sbjct: 181 TQGAQKALEAAGIKVVEIQPANSEREKAISVMENLLQTHPNIKGVFCTNDEMALGAVKAL 240 Query: 227 QTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 Q AGK +++ +G DG+PD K++ +G L T+AQ IG KGVETA KVL+GEKV+ + Sbjct: 241 QQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIGKKGVETAVKVLRGEKVETRI 300 Query: 287 PVDLKLVVKQ 296 LV KQ Sbjct: 301 DTGTTLVDKQ 310 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 178/322 (55%), Gaps = 27/322 (8%) Query: 1 MNMKK--LATLVSAVALSATVSANAMAKD-------------TIALVVSTLNNPFFVSLK 45 M K LA L+S + + + + +K+ T+ L +S+L+N FF+ ++ Sbjct: 1 MKKTKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGME 60 Query: 46 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ 105 G + + ++G L+ ++ + AK+L++++DL + IL++N D+DA+ AVK A + Sbjct: 61 KGVKDKTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAKE 120 Query: 106 ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG----AKVIELQGIAGTS 161 ANIP+I LDR A ++ + + +DNV G+ A + I K + V+E++G+ GTS Sbjct: 121 ANIPIIFLDRGANSEDMTTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEIEGLQGTS 180 Query: 162 AARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMAL 220 AAR+RG+GF + HK ++A Q DF++ K +NVMQN+L A+P + AVF ND+ + Sbjct: 181 AARDRGKGFHNVMDKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPKIDAVFGHNDDCTV 240 Query: 221 GALRALQTAG-------KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETA 273 GA +A+ + K + VVG DG ++V G + +I+Q P +G + VE Sbjct: 241 GAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSISQDPIGMGVQAVEVG 300 Query: 274 DKVLKGEKVQAKYPVDLKLVVK 295 K +KGE+V+ + K Sbjct: 301 LKAIKGEQVEKHIYTKFFPITK 322 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 150/284 (52%), Gaps = 4/284 (1%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD-KLGYNLVVLDSQNNPAKELAN 74 +A S + K I + ++ + L+DG ++ + ++ +D+ N+ +K+L+ Sbjct: 46 TAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQ 105 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLG 133 V++ + +++ P D+ + V ANQANIP++ ++R + +++ S+++ Sbjct: 106 VENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDKATAYVGSESIKA 165 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G + + +AK K+ + G G A +R EG +Q + + V+ A++DR Sbjct: 166 GIMQMEEVAKLLNGKGKIAIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLEGTAEWDRA 225 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVND 251 KG+++M+N L + + AV NDEMA+GA+ AL+ GK DV+V G D TPD + V + Sbjct: 226 KGMSLMENWLQSGKKIDAVVCNNDEMAIGAIMALEDEGKLDDVIVAGVDATPDALEYVKE 285 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GKL T+ Q G G+E A K KGEKV+ + +LV K Sbjct: 286 GKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEKFNWIPYELVTK 329 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 114/271 (42%), Positives = 162/271 (59%), Gaps = 1/271 (0%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 + I + +ST NNP+FVS+ + + A + L V D+QN+ A +L NVQ+ + Sbjct: 47 NELNIGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVD 106 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 +LINP DSDA+ A+K AN A+IPVI +DR + G V++ +ASDNV GK+A + K Sbjct: 107 AILINPVDSDAIVPAIKAANNAHIPVIAMDRGSNGGTVLTTVASDNVAAGKMAAQAVEKL 166 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTA 204 G+ KV+EL G G SA +RG+GF N+L+SQ A+FDR GLN QN+L + Sbjct: 167 VGKNVKVLELSGTPGASATIDRGKGFNSEAKTLGLNILSSQSANFDRTTGLNTTQNMLQS 226 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 H DVQA+FAQNDEMALGA +A+Q G + + G DG + A+ G + ATIAQ P + Sbjct: 227 HKDVQAIFAQNDEMALGAAKAVQATG-QKIAIFGIDGESETHDAIKAGTMTATIAQQPAK 285 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 IG ++ +G+K+ + LV K Sbjct: 286 IGEMALQATYDYYQGKKIAHMINSPIYLVDK 316 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 156/302 (51%), Positives = 216/302 (71%), Gaps = 8/302 (2%) Query: 1 MNMKKLAT---LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 MN+ K L+ + +++ + K I +V+STLNNPFFV++KDGA+KEA+KLGY Sbjct: 1 MNINKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGY 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 +LVVLDSQN+PAKE ANV+DL G LLINPTDSDAV V++AN++NIPVITLDRQA Sbjct: 61 DLVVLDSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQA 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEG---AKVIELQGIAGTSAARERGEGFQQAV 174 G++ SHIASDN+ GG++A +Y+ K + V+E+QGI G SA R+RGEGF + Sbjct: 121 NGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFHNIM 180 Query: 175 AAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD 233 + KFN ++ Q ADFDR KGL VM+N++ A+P++Q VFA NDEMALGA++A++ +G + Sbjct: 181 DKNDKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKASGIN- 239 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +V+GFDG D + +++ ++ A IAQ PD IGA GVE A+K+ KGE ++ K DLK+ Sbjct: 240 ALVIGFDGNDDAKDSIDANEMTAIIAQQPDLIGALGVELANKIYKGESIKNKIAADLKVY 299 Query: 294 VK 295 K Sbjct: 300 TK 301 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 152/293 (51%), Gaps = 6/293 (2%) Query: 10 VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPA 69 + L S A A I + ++ +++ F ++ G ++ A K L D+Q + Sbjct: 6 LFIAVLLLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQGDVV 65 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK---GEVVSHI 126 +++ VQ + +++ P D+ A N + A +A +P++ ++R + + V+ + Sbjct: 66 RQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPKGVTTV 125 Query: 127 ASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQ 185 AS+++ G++ Y+A+K G + + G ++ +R EG +Q + + ++ Q Sbjct: 126 ASNDIEAGQLQMRYLAEKMGGKGTIALIMGDLAQNSTHDRSEGVKQVLKDYPGITIVEQQ 185 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMVVGFDGTP 243 A++ R KG+++ N L A A+ A NDEMA+GA ALQ AG K +V +VG DG P Sbjct: 186 TAEWQRNKGMDLTSNWLLAGRTFDAIVANNDEMAIGAAMALQQAGKAKGEVAIVGIDGLP 245 Query: 244 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 DG A+ G LAA++ Q P +++A K++KGE V A+ V +L+ + Sbjct: 246 DGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGEPVDAEVWVPFQLITPE 298 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 159/284 (55%), Gaps = 8/284 (2%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQD 77 +K TI + + L P+ V + + +K A+K+ +++ D+ + +K++++V++ Sbjct: 41 ACKGPDSKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVEN 100 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 + +L+I+P ++ + + VK A IPV+ LDR+ ++I +DNV G+ A Sbjct: 101 FMTKKVDLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGEAFTTYIGADNVQIGRQA 160 Query: 138 GDYIAK-KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 196 G+Y +G K+++L+G++G++ A ER +GF + +A K V+ + +++R G Sbjct: 161 GEYFKNTLLPQGGKIVQLKGLSGSTPAAEREKGFMEGIAGSKIEVVDTADGEWERSVGQQ 220 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP---DGEKAVNDGK 253 M LL AHPD+QAV+AQND MA GA A Q AG+ D+ VG DG P G KAV G+ Sbjct: 221 KMDALLKAHPDIQAVYAQNDPMAEGAWLAAQAAGRKDLKFVGIDGLPIESGGIKAVEQGR 280 Query: 254 LAATIAQLPDQIGAKGVETADKVLKG-EKVQAKYPVDLKLVVKQ 296 L+AT G + VE A K+L + V + + +LV ++ Sbjct: 281 LSATNLYP--TGGEEAVEAARKLLIDCQPVPKEQTLPTELVTRE 322 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 167/324 (51%), Gaps = 33/324 (10%) Query: 3 MKKLATLVSAVA-------LSATVSANAMAKDT----------------------IALVV 33 MKK L++A+ L S A DT + Sbjct: 7 MKKANMLLAALCAVGMTASLFGCSSGQAQGGDTQPQASAAPAADAASAPQREQIVVGFSN 66 Query: 34 STLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS 93 + + F+V L+ G Q+ AD G L+ D + A + V+D +G +++ P DS Sbjct: 67 WSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGVDGIVLCPIDS 126 Query: 94 DAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIE 153 +A + NQA IP++T D G+V SHIASDN LGG++A +I ++ G KV Sbjct: 127 NAAVTEAETINQAGIPLVTTDIAVAGGDVASHIASDNTLGGQLAAQFIGEQLGGTGKVAL 186 Query: 154 LQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 + ++ ER GF +A ++A Q + R KGL+VM+N+L ++PDVQ V Sbjct: 187 IN-NPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQSNPDVQGV 245 Query: 212 FAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK-LAATIAQLPDQIGAKGV 270 FA ND M LGAL+A+Q A + D+++VGFD T + K + +G L A++AQ P ++G + Sbjct: 246 FAVNDMMGLGALQAVQAAQRDDIVIVGFDATEEAVKYIKEGSALKASVAQNPVELGKTTM 305 Query: 271 ETADKVLKGEKVQAKYPVDLKLVV 294 ET KV+ GE+V+ PV ++LV Sbjct: 306 ETMLKVIAGEQVEKNIPVPVELVT 329 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 110/293 (37%), Positives = 162/293 (55%), Gaps = 10/293 (3%) Query: 14 ALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELA 73 + + K +A+V+STLNNP+FV L + A++ A++LGY + DSQN+ AKE A Sbjct: 21 SFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESA 80 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVL 132 + + G ++ NPTD+D VK A +A IPV +DR G V+ I SDN Sbjct: 81 HFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDNYY 140 Query: 133 GGKIAGDYIAKKAGEG---AK---VIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQ 185 GG + G+Y K E AK EL GI +R GF V + F ++A Q Sbjct: 141 GGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ 200 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDG 245 A+FDR V + +L AHP+++A++ ND MALGA++A + AG++D+ + GFDG D Sbjct: 201 SAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDV 260 Query: 246 EKAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGE-KVQAKYPVDLKLVVKQ 296 A+ +GK + ATI Q P + VE AD+ L+GE PV ++LV ++ Sbjct: 261 INAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRE 313 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 + I + ++ N F V++ D + +A ++G L+ +D++ + K++ V+ + Sbjct: 27 SGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQ 86 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI 141 G +++NP + +A A+K+A A IP+I ++ + T + + + SD+ +IA YI Sbjct: 87 GVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSE-TSAKPTAFVGSDDTESARIAMKYI 145 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQN 200 A+K G ++ + G G +A +R G + + A+ +LA Q ++DR KG+++ +N Sbjct: 146 AEKLGGKGNILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWDRAKGMSLTEN 205 Query: 201 LLTAHPD-VQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATI 258 + ++ D + A+FAQNDEM +GA++AL+ AG K V+VV D PD +AV G L AT+ Sbjct: 206 WIQSYGDKINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDALQAVKKGTLDATV 265 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 Q + G K +ETA K K E + + + +LV K Sbjct: 266 FQNAKEQGGKAIETAVKAAKKEAFEKEVLIPFQLVDK 302 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 159/304 (52%), Gaps = 10/304 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 M + K + A A + T+ L++ +L N FF ++ GA+ A++ G Y L Sbjct: 38 MKLLKNTAAAVTALALSVGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYEL 97 Query: 60 VVLDSQN--NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + + QN + ++ V++ +G +++ P DS A+ ++ A +A I VI D Sbjct: 98 LAVGMQNETDFESQINAVENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVAL 157 Query: 118 TKGEV------VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 G + ++ + DN +G ++AG+ + + GEG +V+ ++G G A +R GF+ Sbjct: 158 DTGAMEQQGIELAFVGPDNRMGAEMAGNALGEALGEGGRVVIIEGNPGADNATQRRLGFE 217 Query: 172 QAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 A+A H +L S+ A ++ + V +LTAHPD+Q V A ND MA+G + AL AG+ Sbjct: 218 DAIATHGLELLESRTAHWETEEANQVFAAMLTAHPDLQGVMAANDSMAIGVIEALDAAGR 277 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQAKYPVDL 290 D++VVGFD P + DG++ AT+ Q + A ++ A +VL+ G ++ + Sbjct: 278 DDILVVGFDAVPAVLPMIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVRTPI 337 Query: 291 KLVV 294 +LV Sbjct: 338 ELVT 341 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 279 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 150/277 (54%), Gaps = 4/277 (1%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 K + + ++ N F V++ D KEA K G L+ +D++ + K++ V+ + Sbjct: 34 GEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITVDAERSALKQVEQVESFIAQ 93 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI 141 +++NP + +A AV A A IP+I ++ + T + + + SD+V +IA +I Sbjct: 94 KVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSE-TSSKPSAFVGSDDVESARIAMKFI 152 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQN 200 A K G V+ + G G +A +R +G ++ + + +LA Q ++DR K +++M+N Sbjct: 153 ADKLGGKGNVVMMHGYMGQAAQIKREQGAREILKQYPNLKLLAHQTGEWDRAKAMSLMEN 212 Query: 201 LLTAHP-DVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATI 258 + ++ + AVFA NDEM LGA++AL AG K V+VV D PD +AV G L AT+ Sbjct: 213 WIQSYGSQINAVFAHNDEMGLGAVKALTDAGLKDKVIVVSIDAIPDALQAVKKGSLDATV 272 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 Q +Q GAK + TA K KG+ + V +LV K Sbjct: 273 FQNAEQQGAKAIATAIKAAKGQPFDKETLVPFQLVTK 309 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 12/302 (3%) Query: 1 MN-MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYN 58 M MK + L + L+A + I + + ++ + + D +EA G + Sbjct: 5 MKYMKWITVLFCLLGLAACR--QDAPRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVS 61 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + + + ++ K+ +V +G +L+I+ ++ + V+ A Q IPVI +DR+ Sbjct: 62 VEIRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKIL 121 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + ++I +DN G+ G+YIA V+EL G+ G++ A ER +GF A++ + Sbjct: 122 SDKYTAYIGADNYEIGRAVGNYIASSLKGKGNVVELTGLGGSTPAMERHQGFMAAISNYP 181 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV- 236 ++ A ++R M ++L HP + AV+A ND +A GA +A + AG+ M+ Sbjct: 182 DIKLIDKADAAWEREPAEVEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKKAGREKEMIF 241 Query: 237 VGFDGTPD---GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 VG D P G + V D L AT + G K ++ A +L+ + + ++ +V Sbjct: 242 VGIDALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQLAMNILEKKSYPRETVMNTAVV 299 Query: 294 VK 295 + Sbjct: 300 DR 301 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 182/312 (58%), Gaps = 18/312 (5%) Query: 3 MKKLATLVSAVALSATVSA-----------------NAMAKDTIALVVSTLNNPFFVSLK 45 K LA + SA L A ++A + + TI +ST NPFFV ++ Sbjct: 7 RKTLAVVASATLLCAGLAACNRDSGGNNATGDHTTTGSASAKTITFALSTQANPFFVQMR 66 Query: 46 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ 105 + AQK+AD+LG + D+ ++ A + + + GT +++INPTDSDA+ AV+ Sbjct: 67 ESAQKKADELGLAINFQDAADDSATQSNQLANAAASGTGVVIINPTDSDAMAPAVQQLVD 126 Query: 106 ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARE 165 IPV+ +DR V S+IASDN GGK A ++ +++ LQG G+SA+RE Sbjct: 127 EKIPVVAVDRAVNNANVASYIASDNETGGKQAAKVLSDAINGEGEILVLQGKTGSSASRE 186 Query: 166 RGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 224 RG+GF + + + V+A Q A+F+R KGL+V NLL AHP+V+A+FA+NDEMALGA+ Sbjct: 187 RGKGFDEGLKDNPNIKVVAKQTAEFERAKGLDVTTNLLQAHPNVKAIFAENDEMALGAIE 246 Query: 225 ALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA 284 AL + DV V+GFDG D KA+ DG++ A+IAQ P ++ + V A K+LKGE Sbjct: 247 ALGSKAGKDVKVIGFDGAEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATK 306 Query: 285 KYPVDLKLVVKQ 296 K V++ K+ Sbjct: 307 KMQVEVVAATKE 318 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 88/311 (28%), Positives = 148/311 (47%), Gaps = 17/311 (5%) Query: 3 MKKLATLVSAVAL-------------SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQ 49 MKKL + A A SAN+ K I LV + F+ S++ GA+ Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 50 KEADKLGYNLVVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAN 107 K ++LG + + + K++ V++ + L I D DA+ K A A Sbjct: 61 KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120 Query: 108 IPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG 167 IPV+T D S IA+DN + G +AG+ +AK KV + GT+ A ER Sbjct: 121 IPVVTFDSNVKGDITSSFIATDNKVAGAMAGEQLAKLINGKGKVAIVSHNPGTTTAIERE 180 Query: 168 EGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 226 GF++A+A + +L +Q +D D+ K L + +++ A+PD+ ++ N+ G + + Sbjct: 181 AGFREALAKYPDIKILNTQFSDGDKSKALAITLDIINANPDIAGIYGTNEPSIFGIAKGV 240 Query: 227 QTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 + G V++VG D + D K + G ++ + Q P +G + V+ K+ KGEKV+ + Sbjct: 241 EEKGLTGKVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYKLSKGEKVEKR 300 Query: 286 YPVDLKLVVKQ 296 LV K+ Sbjct: 301 IDTGAILVTKE 311 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 6/281 (2%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQN--NPAKELANVQD 77 A++ K I L+ + ++++K GA+ +A +LG L +P +++ ++D Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 + +LI PTD A+ V+ A A IPVI +D + VS +A+DN+ ++A Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAEMA 162 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGL 195 D + + G K+ + G+ R GF+ + ++ +Q + D+ + L Sbjct: 163 ADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRAL 222 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKL 254 N ++LTAHPD+ + N+ +G A++ V VVGFD + A+ + + Sbjct: 223 NQALDILTAHPDLAGFYGTNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYI 282 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A++ Q P +G KGVE A L+G++V + + ++ K Sbjct: 283 QASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVDTGVTVMTK 323 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 150/302 (49%), Gaps = 11/302 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKKLA V A A+ A A A I + ++ ++ F +L++G + A ++ + Sbjct: 1 MKKLALSVLASAMFAGSVAAAD--LKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIE 58 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--- 119 D +N +L +Q+ G +++NP D+DA + A A IP+I ++RQ Sbjct: 59 DGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQ 118 Query: 120 -GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH- 177 + + +AS+ + G + + + + G V+ + G AA +R + + Sbjct: 119 LPDNQAFVASNEEVSGTLQTEEVCRLLGGKGNVVVMMGELSNQAAIQRTKDIHDVIKRKE 178 Query: 178 --KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--D 233 V+A Q A++ R+KG ++M N L+A + AV + NDEMA+GA++AL+ +G+ Sbjct: 179 CSGMKVVAEQTAEWSRLKGNDLMTNWLSAGLEFDAVISNNDEMAIGAIQALKASGRKMDS 238 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 V+V G D TPD A+ G L T+ Q GA V+ A ++ KGE V K V +LV Sbjct: 239 VVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKVWVPFELV 298 Query: 294 VK 295 Sbjct: 299 TP 300 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 2/278 (0%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL 78 S A K + + + +L N F V L + A+K+A +LG L + D +P ++ V+ + Sbjct: 46 TSKPADKKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETM 105 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 G +++NP D+ A AV A ANIPVI ++ + ++ S++ S +V G++ Sbjct: 106 ISDGVDAIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKLTSYVGSKDVYAGELEM 165 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNV 197 IA K G ++ L G G SA ER EG Q + + VLA + A++ R + + V Sbjct: 166 QAIADKIGGKGNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSEAMTV 225 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAAT 257 M+N L A + AV A+NDEMALGA +A+ A K D+ +G DG D AV G L AT Sbjct: 226 MENWLQAFDKIDAVVAENDEMALGARKAI-EAKKLDIPTIGVDGITDALDAVEKGTLIAT 284 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 I Q G+K +E A KGE V +Y +D + V K Sbjct: 285 IFQDGAGQGSKALEIAVAKAKGENVDKEYWIDFEPVTK 322 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 167/299 (55%), Gaps = 11/299 (3%) Query: 5 KLATLVSAVALSATVSAN--AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLV 60 + L + + L A + A K I T+N+P+ V++ +G +K A + +L+ Sbjct: 9 RTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLI 68 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 V D N+ +K++A+V+ L +G K+L+I+P A+ VK A A I V+TLDR+ Sbjct: 69 VTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP 128 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 V H+ +N+ G AG+++AKK +IELQG AG SA +R +GF +A+A H Sbjct: 129 -VTVHVGGENLPLGVGAGEFLAKKLNGKGNIIELQGTAGASATIDRNKGFAEAIAKHPDM 187 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAH--PDVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 V+ASQ D+ R K + M++++ +QAV+A NDEMALGA++ L+ AG+ ++V V Sbjct: 188 KVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGRLNEVAV 247 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 VG DG +AV GKLAAT +G+ETA KV KGE+V + V Sbjct: 248 VGIDGQETAFEAVKQGKLAATFVYPFV--APEGIETAYKVAKGEEVPETITLPTVSVTP 304 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 156/299 (52%), Gaps = 6/299 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 M +KKL +V++V + ++ I + ++ ++ F L+ Q + + G + Sbjct: 1 MKLKKL--IVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSG 58 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 D++ + A+++ +++ +G +++NP D+ V +K+A A IP++ ++R+ Sbjct: 59 QFEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEV 118 Query: 120 --GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 ++++ SD+ L GK+ + +AK V+ L G A R+R G ++ A + Sbjct: 119 TLPAGMAYVGSDSKLAGKLQMEELAKLMNGKGNVMILMGELSNEATRDRTRGVEEVAAKY 178 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV 236 +L Q A + R + +++ + + A+ + NDEMA+GA+ AL+ A KS V+V Sbjct: 179 PGIKILDKQTAKWGRKEAVDITTDWALTGQQIDAIASNNDEMAIGAILALKQAKKSGVLV 238 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G DGTPD + + G LA ++ Q G V+TA +++KGEKV++ + +L+ K Sbjct: 239 AGVDGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEKVESNVLIPYQLITK 297 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 132/301 (43%), Gaps = 9/301 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMA--KDTIALVVSTLNNPFFVSLKDGAQKEAD--KLG 56 M ++ L AL A ++ + I + + + + ++ + ++E + Sbjct: 1 MTFRRYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQAD 59 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 +++ +++ K++A+++ + +L+++P +S+A ++ A Q IPVI +DR+ Sbjct: 60 AEVLIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRK 119 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 +++ ++N GK AG Y + E++G G+++ ER +GF A+ Sbjct: 120 IATESYTAYVGANNYQIGKEAGLYAIGVLKGKGNIAEVRGTKGSTSDAERHKGFVDALKN 179 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 ++A +F + MQ + HP + VFA ND MA G A Sbjct: 180 APEVQIVAETWGNFLQADAKTQMQQIFQEHPHIDLVFAMNDPMAAGTHEAAMQFNGKIPF 239 Query: 236 VVGFDGTPD-GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++G D G + + + A+ G K +E A K+L + Q + ++ +V Sbjct: 240 IIGVDALQQVGIQNIENSVQDASFIYP--TGGEKVIELAMKILHKQPFQRENILNTTVVD 297 Query: 295 K 295 K Sbjct: 298 K 298 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 163/297 (54%), Gaps = 4/297 (1%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK + +++ + +++ NPF+ S++ GA+++A +LG +VVL Sbjct: 1 MKLVKLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVL 60 Query: 63 DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 +++ ++ V+D +G + I TD +A+ ++ A A IPV+ +D + Sbjct: 61 SPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGIN- 119 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + V+ I +DN G K+A D+I + G+ V LQGI S + R +G + N Sbjct: 120 KGVTFIGTDNKAGAKMAADFICDRVSRGSDVAILQGIITQSTGKARADGAHAGLKGCGLN 179 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGF 239 ++A QPA++DR +G VM+N+LT + ++AVFA ND MALGA+ AL+ A +DV+VVGF Sbjct: 180 IVAEQPANWDRAQGRTVMENILTRNQKLKAVFASNDNMALGAVEALKDADMLNDVIVVGF 239 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 D PD K++ G++ ATIAQ +GA GVE A ++ KG + LV K+ Sbjct: 240 DANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSLPPVVDTGTLLVTKK 296 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 137/281 (48%), Gaps = 4/281 (1%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKELANVQDL 78 K + + ++ ++ F + DG +K A+K G L +D++ + AK++ V++ Sbjct: 32 GGQGGKKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEFVDAKEDIAKQMNQVENF 91 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIA 137 +G ++++ P D+ A A ++ ++R + ++ S+ G + Sbjct: 92 VTQGKDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLPDGAYYVGSEEKKAGIMQ 151 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 +Y+A+K G ++ L G +R EG ++ + +L Q + R G+ Sbjct: 152 MEYLAEKMGGKGNIVILMGKLDNEGTIKRTEGVEEIAKKYPDIKILDKQTGLWQRTDGMA 211 Query: 197 VMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 +N L + + + A+ + ND+MALGA++AL+ +GK+ + V+G D TPDG A+ G ++ Sbjct: 212 KTENWLNKYGNEINAIVSNNDDMALGAVQALKDSGKTGIFVIGVDATPDGLAALAAGDIS 271 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 AT+ Q D G VE A K GE V + V KLV + Sbjct: 272 ATVFQDADGQGGGAVEVAKKAANGETVVKETWVPFKLVTPE 312 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 153/306 (50%), Gaps = 13/306 (4%) Query: 3 MKK---LATLVSAVALSATVSANAM------AKDTIALVVSTLNNPFFVSLKDGAQKEAD 53 MKK + + +A T A K I L + ++ F + + + EA Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 54 KL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 L +LVV++++ +PA++ + + +L + +L+ P D+ + ++AN + IP+I+ Sbjct: 61 NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120 Query: 113 LDRQA-TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 ++ + + +++ SD++ G + +Y K+ V+ L+G A +R EGF+ Sbjct: 121 VNNFLKNQDDAAAYVGSDSITSGIMEAEYAVKQLNGKGNVVILKGEPNHETAIKRTEGFK 180 Query: 172 QAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 Q + + ++ Q D+ R G+ + +N + A+ A NDEMA+GA+ AL+ Sbjct: 181 QVLQNYPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILANNDEMAIGAIMALKENN 240 Query: 231 K-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 ++V V G D TPD K + +G L T+ Q G++ ++ A K++KGEK+ K V Sbjct: 241 LINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYKLVKGEKINKKIFVP 300 Query: 290 LKLVVK 295 +LVV Sbjct: 301 YELVVP 306 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 154/281 (54%), Gaps = 6/281 (2%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT 79 ++ TI V + F + +G +K+A++LG +LV+LD+Q + ++ +++L Sbjct: 38 ASKKDGGYTIGCTVYYMT-EFVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLI 96 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGD 139 + ++++ DSDA+ A++M + A IP++ ++ E ++ D+VL G++ Sbjct: 97 AQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYHYVGPDDVLAGELEMQ 156 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNV 197 + G V+ L+G G SA +R EG Q + + K NVLA Q A++ R + L + Sbjct: 157 NAIDEIGGEGNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTANWSREEALTL 216 Query: 198 MQNLLTAH-PDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLA 255 ++N L + A+ A NDEMALGA++AL+ AG +D ++V G D DG AV DG L Sbjct: 217 VENWLETFSGKIDAIVAHNDEMALGAIQALEAAGLTDKIVVTGVDAILDGCNAVKDGTLL 276 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKY-PVDLKLVVK 295 T+ Q G++ V+ A VL+G+ + + +D+K + K Sbjct: 277 GTVYQDAGLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITK 317 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 133/301 (44%), Gaps = 9/301 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMA--KDTIALVVSTLNNPFFVSLKDGAQKEAD--KLG 56 M +K L AL A ++ + I + + + + ++ + ++E + Sbjct: 10 MTFRKYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQAN 68 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 L++ +++ K++A+++ + +L+++P +S+A ++ A Q IPVI +DR+ Sbjct: 69 TELLIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRK 128 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 +++ ++N GK AG Y + E++G G+++ ER +GF A+ Sbjct: 129 IATESYTAYVGANNYQIGKEAGHYAIGILKGKGNIAEVRGTKGSTSDAERHKGFVDALNN 188 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 ++A +F + MQ L HP++ VFA ND MA G A Sbjct: 189 APEVRIVAETWGNFLKADAKVQMQQLFQQHPNIDLVFAMNDPMAAGTHEAAMQFNGKIPF 248 Query: 236 VVGFDGT-PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++G D +G + + A+ G K ++ A K+L + + + ++ +V Sbjct: 249 IIGVDALQQEGISNIENNVQDASFIYP--TGGEKVIDLAMKILHKQPFERENILNTAVVD 306 Query: 295 K 295 K Sbjct: 307 K 307 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 84/297 (28%), Positives = 149/297 (50%), Gaps = 8/297 (2%) Query: 5 KLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVL 62 + ++ A L S A+A + + V +N + L Q+ A ++ G L V Sbjct: 12 RTRAVLFATVLCLAGST-ALADLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVE 69 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 DS ++ ++L V+ + +++NP D+ A G + A +A IP++ L+ + E Sbjct: 70 DSGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREF 129 Query: 123 ---VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178 V + +D G++ +Y+A+K G + L G R+R G + +A + Sbjct: 130 PAGVVFVGTDERRLGQMQMEYLAEKMGGKGDLAILLGRLAHDDTRKRTAGVKDVLARYPQ 189 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 V+ Q D+ R KGL++ N L++ + AV A NDEM +GA AL+ AG+ +V V G Sbjct: 190 IRVVEEQSGDWQRDKGLDLTNNWLSSGREFDAVVANNDEMGIGAAMALRQAGRREVSVGG 249 Query: 239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DGTPDG A+ G+LA T+ + P +G + V+ A ++++ + VQ + + L+ Sbjct: 250 IDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQGDVWIPVHLITP 306 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 108/291 (37%), Positives = 160/291 (54%), Gaps = 13/291 (4%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 V+ A K I VSTLNN FFV LK G +K A + G++LV ++ + +++ + + Sbjct: 59 PVANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAIN 118 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 L +G L++NP DS A+ AV+ AN NIPV TLDR + G+V S +ASDNV G+ A Sbjct: 119 LLSQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGKVTSFVASDNVALGQTA 178 Query: 138 GDYIAKKAGE-----GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 +IA + + V++L G+ GT+AA +R +GF +A + V+A Q FD+ Sbjct: 179 AKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFDQ 238 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-------KSDVMVVGFDGTPD 244 K LN M N+L +P + AVF ND+ +GA +A+ AG K ++V+G DGT Sbjct: 239 EKSLNAMTNILQKYPQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGTAQ 298 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A+ GK ATI+Q P Q+ AK ++ + V A Y L+ K Sbjct: 299 ALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPTLLIDK 349 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 152/275 (55%), Gaps = 3/275 (1%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 +T+NNPFF ++++ ++ D+ G L+V+D+QN+ K+++ V+DL + Sbjct: 63 GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQ 122 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHI-ASDNVLGGKIAGDY 140 G +L + P DS ++ ++++ +A +PV+ D ++V+ I SDN G++ + Sbjct: 123 GIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVNTIIVSDNYYAGELVAED 182 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQN 200 + KK EG+KV L A +R GF+ + F +++ D L + ++ Sbjct: 183 MMKKLPEGSKVCILT-SPSAEACIKRQNGFKDKADGY-FKIVSEIDGKGDTATSLGIAED 240 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 +L +PD+ A +A ND A+G ++AL++ K+DV+V G DG P G++A+++G + AT AQ Sbjct: 241 VLQGNPDLGAFYAINDPSAIGCVQALESQKKTDVLVYGVDGQPMGKQAISEGTMEATAAQ 300 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P IG + V A K+L GE V+ V L+ K Sbjct: 301 SPINIGKESVAAAYKILSGESVEKNILVPTFLIDK 335 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 269 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 167/307 (54%), Gaps = 16/307 (5%) Query: 1 MNMKKLATLVSAVALSATVSANAMA----------KDTIALVVSTLNNPFFVSLKDGAQK 50 M KK +AV L+ ++ +A+V+ TL++P++ ++ GA+ Sbjct: 1 MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKA 60 Query: 51 EADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 +LG ++ V+ ++++ +++ ++D + L+++P+ D V ++ A + Sbjct: 61 AGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---V 117 Query: 109 PVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 168 PV+ +D A S I ++N G G ++ +G KV + G G +A ER + Sbjct: 118 PVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKVAIISGALGNTATDERVK 177 Query: 169 GFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT 228 G + A+ ++A QPAD D+ K ++VM+N+L + DV+ VFA ND+MALG LRA++ Sbjct: 178 GAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGVLRAVEA 237 Query: 229 AGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 G DV V+G DGT + +++ DGKLA TIAQ P ++G +GV+ A + GEKV + Sbjct: 238 KGL-DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINS 296 Query: 289 DLKLVVK 295 ++++ K Sbjct: 297 GVEVITK 303 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 269 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 146/286 (51%), Gaps = 2/286 (0%) Query: 12 AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVLDSQNNPA 69 A A + S+ +IA + +L+ PF+ +K G + +A G + V DS++N Sbjct: 39 ASAEKSGASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNAN 98 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASD 129 +LANVQD ++I+PTDS + + A +A IPV+ D GE VS I++D Sbjct: 99 TQLANVQDAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDIGTDSGEYVSFISTD 158 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADF 189 N G K G+Y+A K +G ++ ++ R EGF++ + V Q Sbjct: 159 NSGGAKKLGEYVADKLNKGDEIAQIALNQARKNGVLRKEGFEEGIKEKLKEVDFRQMEKV 218 Query: 190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV 249 +R +G+ Q+L+T++P+++ +F +++ ++GA+ AL+ +VGFD +P+ +A+ Sbjct: 219 NRDEGVRYTQDLITSYPNLKCIFCHSEDPSMGAVTALKEINNDKCKIVGFDCSPEVVEAI 278 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + AT AQ P +G V+ L G + + VD LV + Sbjct: 279 KSGDILATAAQQPVFMGRTAVDCLKTHLDGGTPEKEISVDTLLVTQ 324 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 166/307 (54%), Gaps = 11/307 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAK-------DTIALVVSTLNNPFFVSLKDGAQKEAD 53 M K+LA + +V LSA V A K IAL+V + ++ +++S+K GA+K A Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 54 KLGYNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 + G N++ + + E+ V+D + +++ +D+ A+ V+ A A IP++ Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 T+D +V S IA+DN A D A+ G+ KV + + G S A +R +GF+ Sbjct: 121 TVDSGVDSDKVASFIATDNEKAASQAADVCAELIGKSGKVGVVNFVPGVSTAVQREKGFR 180 Query: 172 QAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 ++ H +L +Q + D+ K + + +++LTA+PDV+A+FA N+ ALG +AL+ G Sbjct: 181 DGMSKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVKAIFAANNRSALGVAQALKGKG 240 Query: 231 -KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 V VV FD PD K + DG + A I Q P ++G +GV+ ++KGE V+ + Sbjct: 241 VAGKVKVVAFDADPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGETVEKRIDTG 300 Query: 290 LKLVVKQ 296 + +V K+ Sbjct: 301 VTIVTKE 307 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 101/276 (36%), Positives = 158/276 (57%), Gaps = 5/276 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 TI + T +PF+V LK +K AD G L+V + + K++++V+D VRG Sbjct: 26 ADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDFIVRGV 85 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 ++++P DS V A+ A +A IPVIT+D A EV +H+A+DN GG+IAG+ +AK Sbjct: 86 DAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETMAK 145 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLL 202 +V + + R+R GF++AV+ + ++A QP R + LN QN+L Sbjct: 146 VLNGKGQVAIID-YPVVQSVRDRVAGFKEAVSKYPGIEIVAIQPG-ITRPEALNTAQNIL 203 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGK-LAATIAQ 260 AHP+V +F D+ AL ++ A+++AG DV V+GFDG + AV + A + Q Sbjct: 204 QAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAVKKEESFVAVVCQ 263 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 P ++G G+ETA +V+KGEKV+ + PV L K+ Sbjct: 264 YPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKE 299 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 138/282 (48%), Gaps = 4/282 (1%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANV 75 + A + I + L+ F L+ + + L++ D+++ K+ + + Sbjct: 36 PADTEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQL 95 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGK 135 +G ++I+P D+DA+ +AVK A IPVIT T + + S N GG+ Sbjct: 96 DSFVAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVWVGSSNENGGE 155 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKG 194 I Y+A+K G K+ L+G G A + R G++ + + ++ Q ++ R + Sbjct: 156 IEMKYVAEKLGGKGKIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFDQTGNWQREEA 215 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGK 253 + +++NLLTA ++ A+ QND MALGAL A++ AGK D + + G D D ++ G+ Sbjct: 216 MALIENLLTAGTELDAIVCQNDGMALGALEAVKAAGKKDQITITGIDAIVDALDSIKAGE 275 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 L AT Q G ++ A K +GE V+ + +LV K Sbjct: 276 LDATCFQDAIGQGTNALDMAVKAARGETVER-MDIPFELVTK 316 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 93/302 (30%), Positives = 151/302 (50%), Gaps = 7/302 (2%) Query: 1 MNMKKLAT--LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 MN ++ + + + A S A K TI V L PFFV + + + EA G N Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVN 80 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L D QN+ K+ A+++ V+ ++I+P D +A+ A++ A +A +PV+T+DR+ Sbjct: 81 LTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVD 140 Query: 119 KGE-VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA-- 175 + +++H+ +DNV GG+ + GAK+ LQG G A +R +G + Sbjct: 141 GVQGILAHVGADNVKGGEAEASAMVAAFPNGAKLFHLQGQPGAGPAIDRNKGVHNVLDPL 200 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 K+ ++ Q A+F R + L+V + L A+ A+ ND+MALGAL A +DV Sbjct: 201 KDKYQIIFEQTANFARAEALSVTEAGLAANGKPDAIICANDDMALGALEACAARNFTDVK 260 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK--YPVDLKLV 293 + GFD P+ AV DGKLA T+ Q P Q V+ A K + + + ++ Sbjct: 261 IYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTEPKEKLVLLTPIVI 320 Query: 294 VK 295 K Sbjct: 321 GK 322 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 90/311 (28%), Positives = 164/311 (52%), Gaps = 18/311 (5%) Query: 1 MNMKKLATLVSAVALSATVSANA--------MAKDTIALVVSTLNNPFFVSLKDGAQKEA 52 MN K ++ L++A + ++A K I + L P+ V++ D A Sbjct: 1 MNKKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAA 60 Query: 53 DKL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 +K + ++ D+ + +K++A++++ G +++ +P ++ + NAV A A IPVI Sbjct: 61 EKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVI 120 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAK-KAGEGAKVIELQGIAGTSAARERGEGF 170 LDR+ + I +DNV G+IAG+YIA +G KV E++G+ GTS +R GF Sbjct: 121 LLDRKIDGDKYTQFIGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGIDRDNGF 180 Query: 171 QQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 ++ + + K ++A AD+ R K + V + +L + ++ A ND MA GA A + A Sbjct: 181 REGIKKNDKIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFLALNDPMAEGAYIAAKNA 240 Query: 230 GK-SDVMVVGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL-KGEKVQA 284 G+ D++ VGFDG P G ++V DG+L+ T G + +E+A ++L +G+++ Sbjct: 241 GREGDILFVGFDGLPTPDGGIRSVMDGRLSMTQVYP--TGGTEAIESAYQLLVEGKELDK 298 Query: 285 KYPVDLKLVVK 295 + ++V Sbjct: 299 TLTLTSEIVTP 309 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 163/310 (52%), Gaps = 16/310 (5%) Query: 1 MNMKKLATLVSAVALSATVSANA--------------MAKDTIALVVSTLNNPFFVSLKD 46 M + +V A ++AT+ A + TI L V+ L FF +K Sbjct: 1 MKARATTRIVIATGVAATMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQ 60 Query: 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 EA K G ++V D++ + A ++ +QD R ++ P + A G VK AN+A Sbjct: 61 SVTAEAKKKGIKVIVSDARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRA 120 Query: 107 NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 IPV+T+DR S IASD+V + G+Y+ K++G ++ LQG GT+ +R Sbjct: 121 KIPVVTVDRNPPGEPGKSFIASDSVAAARTLGNYVVKESGGKGQLAILQGQIGTTPQVDR 180 Query: 167 GEGFQQAVA-AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRA 225 +GF QA+ A V++ QPAD+ + K +V Q++L AHP + ++ Q D MALGA +A Sbjct: 181 QKGFGQALKNAPGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDILWGQADAMALGAAQA 240 Query: 226 LQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA 284 ++ +G K ++VGFDG G KAV G + AT+ Q ++G V TA ++KG+KV A Sbjct: 241 VKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVPA 300 Query: 285 KYPVDLKLVV 294 + L+ Sbjct: 301 QQLQPAFLLT 310 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 16/311 (5%) Query: 1 MN--MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--- 55 MN ++ L T + S +S A TIA++ + ++ + GA K +L Sbjct: 1 MNPVLRNLLTC-ALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEK 59 Query: 56 --GYNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 +L+ +++ +++ V++ R +++ P D+ A+ V A +A IPV+ Sbjct: 60 GIKVDLIWKGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVV 119 Query: 112 TLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 D + VS +A+DN GG++A + + + VI L+ G+++ ER GF Sbjct: 120 IFDSALKTDKYVSFVATDNYKGGQLAAERMGQLLEGKGNVILLRYAVGSASTEEREAGFM 179 Query: 172 QAVAA--HKFNVLAS-QPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQ 227 + + V++S Q A R QNLL +V +F + + +AL+ Sbjct: 180 DTLKSKFPNIKVISSDQHAGATRETAYQASQNLLNRFGHEVNGIFCPCEPPTVAMAKALR 239 Query: 228 TAGK--SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 GK V +VGFD + +G + + Q P ++G GV T + L+GEKV+ + Sbjct: 240 DIGKAGGKVKMVGFDAGSQSVIDLKNGDVQGLVVQNPLRMGYLGVITMVQHLQGEKVEKR 299 Query: 286 YPVDLKLVVKQ 296 +++V + Sbjct: 300 IDTGVQIVTPE 310 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 96/319 (30%), Positives = 162/319 (50%), Gaps = 27/319 (8%) Query: 3 MKKLATLVSAVALSATVS----------------ANAMAKDTIALVVSTLNNPFFVSLKD 46 MK + A L+ + +K TI + + TL+NPFF + D Sbjct: 1 MKHRLFIALACLLTVFAGCNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGD 60 Query: 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 E K GY+ VV+ + AK+ ++D V+ ++++P DS ++ ++ AN A Sbjct: 61 NIVSEGKKRGYDAVVVSGDKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAA 120 Query: 107 NIPVITLDRQA--TKGEVVSHIASDNVLGGKIAGDYIAKKAGE-GAKVIELQGIAGTSAA 163 IPV T+D ++ + IA+DN GGK A + + GE G K+ L + Sbjct: 121 GIPVFTVDIPCHEPGVKIATQIATDNYGGGKEAAKAMIEALGEAGGKIAIL-HFKQAESC 179 Query: 164 RERGEGFQQAVAAHK------FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDE 217 + R +GF++ + AH +++A + + +G ++ L A+PD+ +FA ND Sbjct: 180 QLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHGIFAINDP 239 Query: 218 MALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKV 276 ALGA AL+ AGK+D V++VGFDG P+G++A+ +GK+ A Q PD++GA+ V+ + Sbjct: 240 AALGARAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIYADPIQFPDKMGAQIVDAIIQQ 299 Query: 277 LKGEKVQAKYPVDLKLVVK 295 KGE + + + L K Sbjct: 300 SKGETLPPQMLIPTSLYKK 318 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 151/289 (52%), Gaps = 10/289 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN--NPAKELA 73 SA ++ TI V TLNN + ++L +GA+ EA+ G + V + +L Sbjct: 61 SAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLG 120 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV------VSHIA 127 ++++ +L+ P+ SD + +A+ +A IP+I LD + T + + Sbjct: 121 IIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYG 180 Query: 128 SDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPA 187 ++N G K+AG+Y+AK +G K L+GI G + A +R GF + A V+A Q A Sbjct: 181 TNNYEGAKLAGEYVAKNFEKGTKTAILKGIEGQTNAADRYNGFIEG-AGDTVTVVAEQTA 239 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGE 246 +++ +G QN+++A+PDV+ F ND M +GALRA++ A + ++GFD + Sbjct: 240 NWEVDQGYTAAQNIISANPDVELFFCCNDNMGIGALRAIKEANMQEQIQIIGFDAVSEAL 299 Query: 247 KAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V +G+ AT+AQ P ++G GV+ K+ G + ++ +++ K Sbjct: 300 NLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEAESYIDTGTEVITK 348 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 3/275 (1%) Query: 23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRG 82 K T+NNPFF L+ + E +K G L+ +D + +K++ + D+ +G Sbjct: 37 TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQG 96 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYI 141 + + +NP D + V ++ +ANIP+I D + V +++ SDN GK+ GD + Sbjct: 97 VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDMNYVTAYVGSDNKNAGKVCGDDL 156 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNL 201 K+ G K+ L ++ +R GF+ A+ F ++A Q D + + ++ Sbjct: 157 VKRYPNGGKIAILNC-PTMNSINDRIAGFKSAIEGKNFTIVAEQDGKGDLQTSMKLADDI 215 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND-GKLAATIAQ 260 L +H D+ A+ ND ALGAL A ++A +S +++ G DG+PD +K + G+ T AQ Sbjct: 216 LQSHSDIVAIMGGNDPTALGALAACKSAKQSKILIYGVDGSPDAKKEIASGGQFVGTGAQ 275 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P QIG K E KVL + V+ K PV L+ K Sbjct: 276 SPKQIGVKSAELGYKVLNKQNVEKKTPVQTFLINK 310 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 86/300 (28%), Positives = 154/300 (51%), Gaps = 6/300 (2%) Query: 1 MNMKKLA-TLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 M K + ++A L+ ++ + IA++ + +NPFF + +GA +A +LGY+ Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDT 60 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT- 118 +V + K+ ++ R K ++++ D+DA +++ +A IP DR+ Sbjct: 61 LVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREINK 120 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 G V+ I S+N G ++AG+ A+ G+G + +EL G + A+ R EGF + Sbjct: 121 TGIAVTQIVSNNFQGAQLAGEKFAELMGDGGEYVELLGPESDTNAQVRSEGFHDILDNFP 180 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 F ++A Q A++ + + + M+++L A+P+++ V ND MALGA ALQ AG+ DV +V Sbjct: 181 EFKMVARQSANWSQTEAFSRMESILQANPNIKGVITGNDSMALGAEAALQAAGRKDVFIV 240 Query: 238 GFDGTPDGEKAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGEK--VQAKYPVDLKLVV 294 GFDG ++ G + ATI Q + E AD ++ + K +D L+ Sbjct: 241 GFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTGLPEKQLMDCVLID 300 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 164/311 (52%), Gaps = 19/311 (6%) Query: 3 MKKLATLVSAVALSATVSAN--------------AMAKDTIALVVSTLNNPFFVSLKDGA 48 MKK+ ++ + + + TI + + T +PF++SLKD Sbjct: 1 MKKILLVLVTMLFIFSCGSKDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYLSLKDAI 60 Query: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 +KEA L V + + K++++++D + ++I+P DS V AVK A ANI Sbjct: 61 EKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVKKAEAANI 120 Query: 109 PVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 168 PVIT+D A +V +H+A+DN GGKIAG+ +A+ +V ++ + +R E Sbjct: 121 PVITVDVPAIGVDVAAHVATDNYTGGKIAGEEMARLLNGKGEVAVIE-YPTVDSVVQRIE 179 Query: 169 GFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 GF++ +A + ++A Q A R + L QN++ A+ ++ +F D+ AL A+ A++ Sbjct: 180 GFKEVIAKYPDIKIVAIQ-AGITRPEALTAAQNMIQANKNLGGIFGFGDDAALAAVAAVK 238 Query: 228 TAGKSD-VMVVGFDGTPDGEKAV-NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 +AGK D + V+GFDG + AV + AA I Q P+ +G V+T K+LKGE+V+ Sbjct: 239 SAGKEDQIKVIGFDGMQEARDAVTKEKSFAAVITQYPEDMGKIAVDTTLKILKGEQVEKN 298 Query: 286 YPVDLKLVVKQ 296 PV + K+ Sbjct: 299 IPVTPGIFTKE 309 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 11/305 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKD----------TIALVVSTLNNPFFVSLKDGAQK 50 M + L L+ + +TV K TI T ++ F ++ D A+ Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 A + G +L++ D++ + K++ + + L + L++ P D + V MAN+A+IP+ Sbjct: 61 AAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120 Query: 111 ITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGF 170 I + + + + G+I G + G+++ ++G G S R GF Sbjct: 121 IICNGDIADKNYTAFVGCTDQESGEILGTWFNDNVEHGSQICIIEGPMGQSGQVGRYAGF 180 Query: 171 QQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTA 229 ++ F VL+ Q A++ R + + + ++ LT + D ++A+ +ND+MA+GAL A + A Sbjct: 181 EEVGMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGDKLKAIVCENDDMAMGALSACKAA 240 Query: 230 GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 G++DV++ G DG D +AV DG+L ++ Q G VE A +++ GE Q + Sbjct: 241 GRTDVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAVEVALQIINGEDYQKDTRIP 300 Query: 290 LKLVV 294 + Sbjct: 301 FHAIT 305 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 22/316 (6%) Query: 1 MNMKKLATLVSAVALSATVSANAMA----------------KDTIALVVSTLNNPFFVSL 44 M K + ++ +S ++A + I + +S L+ F + Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLD-EFLTYM 59 Query: 45 KDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 103 +D ++EA + + D+QN+ +++A V++ R +++NP D+ + + V M Sbjct: 60 QDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMV 119 Query: 104 NQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSA 162 N A IP+I +R + + + S+++ G + + +AK + + G G A Sbjct: 120 NDAGIPIIIANRTFDGVDQATAFVGSESIQSGLLQMEEVAKLLNNEGNIAIMDGELGHEA 179 Query: 163 ARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 R EG +Q + H V+ A FDR +G+ +M+N L + ++ AV A NDEMALG Sbjct: 180 QIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVANNDEMALG 239 Query: 222 ALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE 280 A+ AL+ GK DV+V G D TP +A+ +GKL T+ Q GA V+ A + GE Sbjct: 240 AILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQGATSVKVAVQAANGE 299 Query: 281 KVQAKYPVDLKLVVKQ 296 V+ + +LV + Sbjct: 300 DVEDA-MIPYELVTPE 314 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 150/299 (50%), Gaps = 9/299 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK L +V AL + S A TI + ++ + F ++ KEA G ++ Sbjct: 1 MKYLKRIVLVAALGCSTSVLAE---TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFE 57 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 D++ + ++ VQ+ G ++++P +S KM +A IP++ ++R ++ Sbjct: 58 DARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKL 117 Query: 123 ---VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178 V + SD G + + +A+ A V + G + A +R + +Q VA + Sbjct: 118 PAGVVFVGSDEKQSGTLQMEELARLANYQGNVAVMIGNLTDAGALQRTKDVEQVVAKYPK 177 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--SDVMV 236 V+ Q A++ R +G+++M N +T + V A NDEMA+GA+ ALQ AGK S V+V Sbjct: 178 MKVVQKQSANYSRSEGMDLMLNWITNGESIDIVAANNDEMAIGAIMALQQAGKQGSKVLV 237 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G D TPDG KA++ GK+ T+ Q G V+ A +++KGEK+ Y + +LV Sbjct: 238 GGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLDPYYWIPFELVTP 296 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 263 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 143/279 (51%), Gaps = 4/279 (1%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL 78 + A + D IA++ +NPFF + GA+ +A +LGY +++ ++ K+ + Sbjct: 20 TALPAFSADLIAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTA 79 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGKIA 137 RG K ++++ +DA AVK A A IP +DR+ G V+ I S+N G ++ Sbjct: 80 IGRGAKAIILDNAGADASVAAVKKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLG 139 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 K GE +EL G + A R +G+ + + +A Q A++ + + + Sbjct: 140 AQEFVKLMGEKGNYVELVGKESDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYS 199 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAA 256 M+ +L A+PD++ V + ND MA+GA+ ALQ AG+ DV+VVGFDG+ D ++ G + A Sbjct: 200 KMETILQANPDIKGVISGNDTMAMGAIAALQAAGRKDVIVVGFDGSNDVRDSIKSGGIKA 259 Query: 257 TIAQLPDQIGAKGVETADKVLKGEKVQAK--YPVDLKLV 293 T+ Q VE AD +K + + +D L+ Sbjct: 260 TVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLI 298 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 150/304 (49%), Gaps = 14/304 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MKK + L T A +T+ + ++ ++ F L++G + +L G L V Sbjct: 1 MKKFIIGAAMSVLLGT----AAHAETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQV 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-- 119 D+QN+ AK+ + +Q+ +++NP D+DA K+A A IP++ ++RQ Sbjct: 57 EDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVD 116 Query: 120 --GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + +ASD + G + + + G + + G AAR R + + + Sbjct: 117 SLPDGQAFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLKTD 176 Query: 178 ---KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--S 232 +V+ Q A++ R +G +++ N L++ + AV A NDEMA+GA++AL+ AGK Sbjct: 177 ECKGISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKDMK 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 +V G D T D A+ G L T+ Q G ++ A K++KG+K++ K + +L Sbjct: 237 SYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPFQL 296 Query: 293 VVKQ 296 V + Sbjct: 297 VTPE 300 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 71/300 (23%), Positives = 132/300 (44%), Gaps = 10/300 (3%) Query: 3 MKK-LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLV 60 MKK L L+ + T + + I + + ++ + + +EA G + Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + +++N ++ ++ R +L++ P ++ AV V+ A IPV+ +DR+ Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKILSD 119 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA-AHKF 179 + + +DN GK G YI + G K++E+ G+ G++ A ER G A+ Sbjct: 120 RYTAFVGADNCEIGKDVGQYIVNRLGGKGKILEITGLEGSTPAMERHRGLADALKAEPGI 179 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVG 238 + AS + + M ++L + + VFAQND MA+GA + + +++ VG Sbjct: 180 EITASVDGAWLQSVAGEKMDSILQDNKGINLVFAQNDRMAVGAYLSARQRQLEKEMLFVG 239 Query: 239 FDGTPD---GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 D P G + V +G L AT G K ++ A +L+ + + LV K Sbjct: 240 IDALPGKGYGVEQVLEGVLDATFIYP--TGGDKVMQVAMDILEKRPYERDTKLSTALVDK 297 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 105/277 (37%), Positives = 149/277 (53%), Gaps = 5/277 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 A I TL +PF+V LK+GA+ A G L+ LD+ + K+ ++QDL R Sbjct: 31 AAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQDLLTRKV 90 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 +L+INP + DAV A+ A + +PVIT+DR G V +H+ DNV GK GD + Sbjct: 91 DVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGGVTAHLGRDNVKMGKAVGDAVLA 150 Query: 144 KAGEG----AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQ 199 + + KVIE+QG AG + R +GF A+ F ++A A++ R + MQ Sbjct: 151 ELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKGSGFKIVAGPYAEYTRANAVTAMQ 210 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA-ATI 258 +LL AHPDV+ V+A ND+MA+GAL+ L AGK DV V G DG + ++ G AT Sbjct: 211 DLLQAHPDVKVVYAHNDDMAMGALKVLAEAGKKDVFVAGVDGLSEALASMAGGDQYVATA 270 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P +G V+TA + G+KV A K V K Sbjct: 271 LNDPRYLGDMTVQTARAIKAGKKVPAFVDAGTKAVTK 307 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 7/292 (2%) Query: 12 AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKE 71 +A + + IA+++ + + F V+L G + +A +LG + VLD++ + + + Sbjct: 23 CAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKGDSSTQ 82 Query: 72 LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNV 131 ++ +QD +G ++++P +S + V+M + A V T+D + +A DN Sbjct: 83 ISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAAVAFDNE 142 Query: 132 LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDR 191 GK+ + +AK GE V+E QG G A RG+GF + + + A + Sbjct: 143 KAGKLGAEALAKLMGEKGTVLEYQGAKGAYHAILRGKGFNDGIKQFPGIKVIGRDAQWTA 202 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-------DVMVVGFDGTPD 244 L++ + TA + +F+ NDEM G + L K + +VG DGTP Sbjct: 203 DNALSLTVDNFTADSSINGLFSHNDEMVRGIVSGLSQINKDAPVGAANHIPLVGVDGTPL 262 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + +G AT+ Q P ++GA ++ +L G++V D KL+ K+ Sbjct: 263 ALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPKMQLTDTKLITKE 314 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 148/299 (49%), Gaps = 7/299 (2%) Query: 3 MKKLATLVSAVALSATV----SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD-KLGY 57 MK ++ L A A+S SA A K + + F ++ K+ + + Sbjct: 1 MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAV 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + D+ N+ +K+L + + + +++ P D + V+ ANQA IPVI L Q+ Sbjct: 61 EVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQS 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 G+ + S N+ G++ G+Y+ + +GAK++ L+G G S +ER +GF+ A+ Sbjct: 121 AGGKYT-FVGSKNIDAGRLQGEYMKEHLPKGAKILYLEGTPGLSHTQERKKGFEDALGRS 179 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 LAS A++DR +G+ V ++ + + P A+ A ND+MALGAL ALQ A + VM+ Sbjct: 180 DVTTLASLSANYDRAEGMKVTEDWIQSFPKFDAIVAANDQMALGALEALQGADRLKGVMI 239 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G DGT D A+ G ++ TI Q E + + KGE A+ V + K Sbjct: 240 SGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAEKLVPFASITK 298 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 15 LSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELA 73 ++ SA I T + + ++ ++E Y L+ D++N+ ++++ Sbjct: 38 MAGCQSATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQIS 97 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 +Q L +G +L+++P + ++ + IPVI LDR+ ++I DNV Sbjct: 98 QIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETESYNAYIGGDNVEI 157 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G++AG +I +++E+ G+ +S A+ER G + + + V+ ++R Sbjct: 158 GRLAGVFIGNHLKGKGRIVEIWGLPSSSPAQERHRGLLEELRKYPGIQVVKELNGQWERD 217 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTP---DGEKA 248 V+ L DV VFA ND MALGA + G + VG D P G +A Sbjct: 218 TVGRVVAAELNTLKDVDLVFAHNDVMALGAYAVCKQKGIEKKLDFVGIDALPGPNAGMQA 277 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + DG L A+ G + +ETA ++L G+ V+ + ++ + Sbjct: 278 ITDGILKASFLYP--TGGEEAIETATRILAGKSVKREQVLNSIQID 321 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 165/278 (59%), Gaps = 9/278 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 + I + ++ + + EA+K G+ L+V D+Q+N AK++++V+DL + Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNID 146 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG---EVVSHIASDNVLGGKIAGDYI 141 +L+++P + + + A++ A + ++PVI +DR A + V++IA+D V G+ AG+++ Sbjct: 147 LLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVTYIATDFVWEGQAAGEWL 206 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQN 200 K G +IEL G G+S+A++R GF V + ++ASQ +F+R +G VM+N Sbjct: 207 KDKTGGTCNIIELTGTVGSSSAQDRATGFAGVVDQNEGMKIIASQTGNFERSEGQKVMEN 266 Query: 201 LLTAH-PDVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAA 256 LL AH +V AVF ND+MALGA++A++ AG D++V+G DG D K+V G+++A Sbjct: 267 LLQAHGGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKSVIAGEMSA 326 Query: 257 TIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 T+ P G +T +K+L G++V + ++ +V Sbjct: 327 TVVSSP-MYGPITFDTVEKILAGQEVPEQTIMEGVVVD 363 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 151/303 (49%), Gaps = 14/303 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MKK ++A L +T A +TI ++ ++ F L++G + A L G +L + Sbjct: 1 MKKFIIGIAAAVLVST----AAHAETIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQI 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-- 119 D+ N+ AK+ + +Q+ G +++ P D+DA K+A A IP++ ++R+ Sbjct: 57 EDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNID 116 Query: 120 --GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 E + +AS+ V G + I K K + + G AAR R + +A Sbjct: 117 TLPEKQAFVASNEVDSGTLQTREICKLLDGKGKAVVIMGELSNQAARMRTKDIHDVLATD 176 Query: 178 ---KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK--S 232 ++ Q A++ R +G ++M N L+A + AV A NDEMA+GA++AL+ AG+ Sbjct: 177 QCKGIEIVQEQTANWQRTQGADLMTNWLSAGIEFDAVIANNDEMAIGAIQALKAAGRSMD 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 V++ G D T D A+ G+L ++ Q G ++ A K+ KGE V+ K + +L Sbjct: 237 SVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEAVERKIYIPFEL 296 Query: 293 VVK 295 V K Sbjct: 297 VTK 299 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 152/320 (47%), Gaps = 29/320 (9%) Query: 1 MNMKKLATLVS------AVALSATVSANA-----------------MAKDTIALVVSTLN 37 M KK+ + +V L S + I + + T Sbjct: 5 MTRKKMLIFTAITLIGVSVLLGGCGSKQGNTQTGTSSGTTTQNTEKSGEKVIGVSLLTRE 64 Query: 38 NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 97 + F+ ++ Q++A + +++D+ + K+LA VQD + +++ PT S + Sbjct: 65 HVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQKVDAIVLAPTASAGIA 124 Query: 98 NAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK-AGEGAKVIELQG 156 AV +A +A IPV T+D +A +G+V SH+A+DN GGK+A Y A+K KV + Sbjct: 125 PAVDLAKKAGIPVFTIDIKA-EGDVKSHVATDNYAGGKLAAKYAAEKVLNGKGKVAIITY 183 Query: 157 IAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQN 215 + +R +GF+ A+A + V+ + K N+ Q++L PD+ +FA Sbjct: 184 SE-VQSCVDREKGFKDALAEYPNIKVVDVENCSGSAEKAANLTQDILLKFPDLDLIFAVG 242 Query: 216 DEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND-GKLAATIAQLPDQIGAKGVETAD 274 D A+GA+ ++ AG++ V V+GFDG P+ + + + G A + Q PDQIG K ++ Sbjct: 243 DPFAVGAVSTIKAAGRN-VKVIGFDGNPEAIQEIKNHGLWVADVVQHPDQIGGKVIDLIA 301 Query: 275 KVLKGEKVQAKYPVDLKLVV 294 G+ V + + +V Sbjct: 302 DYFNGKSVPPQVLIPPTIVD 321 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 154/288 (53%), Gaps = 12/288 (4%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 S + +++K T+ + + T NPFF + D + E K GY++ V+ + + A++ V Sbjct: 40 SGESTKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQV 99 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ--ATKGEVVSHIASDNVLG 133 +D V G +++ P DS +G A++ A A IPV T D A EVVSHIA+DN+ G Sbjct: 100 KDFIVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAPGAEVVSHIATDNLGG 159 Query: 134 GKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-------FNVLASQ 185 GK A + + + G G KV+ L + R +GF++ + H +++ Sbjct: 160 GKQAAEAMIEAVGSAGGKVVILD-FKAAESCILRVQGFKEVIDKHNSENPSSAITIVSEL 218 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPD 244 P D + K ++ L AHPD+ +FA ND ALGA AL+ A K+D V +VGFDG PD Sbjct: 219 PGDGQKDKSYKAAEDALQAHPDLAGIFAINDPSALGARAALEKANKADQVKIVGFDGQPD 278 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 G +A+++GK+ A Q PDQIG + + +GE+V + + L Sbjct: 279 GMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKEQLIPTGL 326 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 137/302 (45%), Gaps = 10/302 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 M L ++ + L S+ K I L L++ + ++ + + EA + Sbjct: 1 MKHPFLLVWLTLIVLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYDDVEI 60 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 ++ D+QNN ++ ++DL + +L+I+P S+ + + A +A IP I DR+ Sbjct: 61 IIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKVNT 120 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 + S + ++N G AG+Y A A ++E+ G+ TS A+ER +GF A+ + Sbjct: 121 DQYTSFVGANNYEIGLAAGNYAANYLPPNAIILEIWGLTQTSPAQERHKGFVDALRERED 180 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALR---ALQTAGKSDVM 235 + ++ L HP+ + V+A ND MA+ A A + ++ Sbjct: 181 LSFRKIEGQWLVDTARMELRKL--EHPEQIDFVYAHNDMMAIAAREYFMAWDSIRGRELR 238 Query: 236 VVGFDGTP-DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++G D G +AV DG++ A+ G + + TA ++++GE V P+ V Sbjct: 239 IIGVDAVAGAGLEAVEDGRINASFLYP--TGGEQVIRTAMRIIQGEPVDKFIPLRTAPVD 296 Query: 295 KQ 296 Q Sbjct: 297 HQ 298 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 130/311 (41%), Gaps = 23/311 (7%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M+KL +S V ++ A TI ++ ++ +P++ ++ G + LG + Sbjct: 1 MRKLLVFLSVVLITGLSLA-----LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKFF 54 Query: 63 DSQ-NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 Q + +L ++ G + I P+D AV +K A + IPVITLD + Sbjct: 55 VPQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSG 114 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV 181 +I +DN G AG + + G KV+ G + +R +GF+ A+A + + Sbjct: 115 RYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIADSEIEI 174 Query: 182 LASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFD 240 + + D + +++ + L AHPD+ A F ++ AGK V +V FD Sbjct: 175 VDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFD 234 Query: 241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETAD---------------KVLKGEKVQAK 285 TPD + V +G + AT+ Q P +G V KV KV Sbjct: 235 TTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIGVQNTLMMLPKVTVDGKVDYV 294 Query: 286 YPVDLKLVVKQ 296 + +V + Sbjct: 295 IDTGVDVVTPE 305 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNL 59 M MK+ ++ L + S N + K I + + + + L + + L Sbjct: 1 MQMKQWLYILIFTLLFSACSDNNVKKYVIGVSQCSEDI-WRDKLNNELVMSTYQHDNVTL 59 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + +N + ++ G +L+++P + + + A A IPVI DR+ Sbjct: 60 KFASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDS 119 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-K 178 + + I +DN G G++I ++ + E+ G+ +S A ER GF A+ + Sbjct: 120 KKYTAFIGADNYEAGYEIGNFIGQQLDGKGNIAEICGLQASSPAIERNRGFMDALKDYSG 179 Query: 179 FNVLASQPADFDRIKGLNVMQNLL-TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV 237 V+A + D+ + G+ M ++L A +Q VFAQND MALGAL++++ + +V Sbjct: 180 IKVIARKHGDWVKESGVMAMDSVLSQAKEPIQYVFAQNDRMALGALQSIKKHKVKGIRIV 239 Query: 238 GFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G D P G + V DG L A+ G ++ A +L+ + + + LV Sbjct: 240 GIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQLALNILEKKPYKRDNYLKGALVT 297 Query: 295 K 295 K Sbjct: 298 K 298 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 175/328 (53%), Gaps = 34/328 (10%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDT-----------------IALVVSTLNNPFFVSL 44 N+ K+ L++ L + A AK IA+V+ TL+NPF+V + Sbjct: 3 NIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWVEM 62 Query: 45 KDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM 102 K+G +KEA G + + S+ + ++L +++L +G K + I P A+ Sbjct: 63 KEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAIVE 122 Query: 103 ANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQ 155 AN+ I V+ +D + G V++ + +DNV G +YI K EG +V ++ Sbjct: 123 ANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKLPEGGEVAIIE 182 Query: 156 GIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 214 G +G ++ R +G +A A KF ++ASQPAD+DR K L+V NL+ +P+++A++A Sbjct: 183 GKSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDVAANLIQKYPNLKAIYAC 242 Query: 215 NDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETA 273 ND MALGA++A+ AGK ++VVG DG P+ ++++GKL AT+AQ P IGA ++ Sbjct: 243 NDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGKLNATVAQDPAMIGATSLKIL 302 Query: 274 DKVLKGEK------VQAKYPVDLKLVVK 295 + +K + + PV+ L+ K Sbjct: 303 IEAIKDKPQISPDIEAKEVPVESNLISK 330 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 163/306 (53%), Gaps = 14/306 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M+ L + +A A + + TIA ++ T NPF+ +++ G + A K NL++ Sbjct: 1 MRLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQ 60 Query: 63 D--SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 S+ + +L +L R + L++ +S + +K ANQ NIP++ LD Sbjct: 61 AVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPA 120 Query: 121 -------EVVSHIASDNVLGGKIAGDYIAKKAGEG--AKVIELQGIAGTSAARERGEGFQ 171 ++ I+SDN G A +Y+ K G+G KV+ ++G+AG R +GF Sbjct: 121 VLQREGVKIAFSISSDNRRAGASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGFT 180 Query: 172 QAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 + + ++A+ P D+DR+K N+ + L HPD+ A++ ND MALGA+ A+ A Sbjct: 181 ERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRHPDLAAIYCANDTMALGAVEAVFAA 240 Query: 230 GKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 GK V+VVG DG D K++ G+L A++AQLP +G++ +E KV+KGE+V K V Sbjct: 241 GK-KVLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGEQVDPKIIVP 299 Query: 290 LKLVVK 295 ++ K Sbjct: 300 TLVIDK 305 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 87/291 (29%), Positives = 155/291 (53%), Gaps = 10/291 (3%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 + K SA+ + A A K IAL++ TL+N +F+S++ GA++ A + +L+V Sbjct: 4 KLLKNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIV 63 Query: 62 LDSQ-NNPAKE-LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 ++ + ++ + V+++ + +++ P DS A A + A +A IP+I LD + Sbjct: 64 QVAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDA 123 Query: 120 GEVVS------HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 + ++ DN GG + +A+ G+ V L+GI G +R G +A Sbjct: 124 KAAEAAGLKFNYVGVDNFNGGYLEAKNLAEAIGKKGNVAILEGIPGVDNGEQRKGGALKA 183 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK- 231 A + ++ASQ A+++ + L V N+LTA+P++ +FA ND MA+GA+ A++ AG Sbjct: 184 FAEYPDIKIVASQSANWETEQALTVTTNILTANPNINGIFAANDNMAIGAVTAVENAGLA 243 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 V+V G+DG P + V GK+ TI QLP + A +E A K + +++ Sbjct: 244 GKVLVSGYDGIPLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 151/309 (48%), Gaps = 18/309 (5%) Query: 5 KLATLVSAVALSATVSANAMA-------KDTIALVVSTLNNPFFVSLKDGAQKEADKL-- 55 + + L+ + +A K I LV+ +L+N FF ++ GA++ A + Sbjct: 24 RFGAFTTVGLLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNAT 83 Query: 56 --GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 + ++ + + A ++A+ + L ++++ P DS A+ V A +A I VI + Sbjct: 84 RFDFTATGINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINI 143 Query: 114 DRQATK------GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG 167 D + G ++ DN G K++G+ +AK G G KV L+G A +R Sbjct: 144 DVALDEATKKAAGIDLAFFGPDNRAGAKMSGEVLAKALGAGGKVAVLEGNPEADNAVQRR 203 Query: 168 EGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 GF A+A N++ ++ ++ +G ++ L +PD+Q + ND MA GA++AL+ Sbjct: 204 LGFDDAIADGSLNLVVAESGHWETSEGQSITAAWLKKYPDLQGIMCANDSMAFGAVQALE 263 Query: 228 TAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 A + VVGFD P + + DGK+ AT+ Q Q+ A G++ + LKGEK Sbjct: 264 AANLLDKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSGWI 323 Query: 287 PVDLKLVVK 295 +LKL+ K Sbjct: 324 RTELKLITK 332 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 152/278 (54%), Gaps = 4/278 (1%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLT 79 A K I + L+ +++++K GA+ A +LG +V + + AK++ + D Sbjct: 26 QASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVINDFV 85 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGD 139 + +++ TD++A+ +K A++A IPVIT+D +SHIA++N K A + Sbjct: 86 NKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAAE 145 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVM 198 +A G+ +V + +AG + + R GF++ ++ + +++A Q + D + V Sbjct: 146 VLANIIGKKGEVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMKVT 205 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAAT 257 +N+LTAHP+++ +FA N+ A+GA RAL+ GK+ DV++VGFD A+ +G + A Sbjct: 206 ENILTAHPNLKGIFAANEAGAVGAARALKARGKTADVILVGFDAAQTEIDAMKEGIIDAL 265 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 I Q P +G +GV+ A L+GE+V+ + + Sbjct: 266 IVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATP 303 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 147/285 (51%), Gaps = 10/285 (3%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLT 79 A IALV+ TL NPFF+ ++ GA++ +LG +L+V + + + +++ ++DL Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLI 103 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-------VVSHIASDNVL 132 ++I P DS + +K A +A I +I +D + V I+ DN Sbjct: 104 RMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEK 163 Query: 133 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 + +IA++ + A+ L+GI +R+R G ++A + ++A + A++ Sbjct: 164 AAYESAGFIAREIHKPAQAAILEGIRSADNSRQRRVGAERAFRENPLIRLVARESANWKI 223 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 +G +V + L + HPD+ +F ND MALGA++ LQ +G+ V V +D + ++A+ Sbjct: 224 DEGRDVTRRLFSDHPDITLLFCANDMMALGAIQFLQESGRYGVKVAAYDALEEAKRAILS 283 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G++ T+ Q + G +G+ A +VL GE V V+ LV + Sbjct: 284 GRMEVTVNQQAAEQGYQGIILASRVLNGEAVPEVVLVETSLVTLE 328 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 60/301 (19%), Positives = 127/301 (42%), Gaps = 10/301 (3%) Query: 3 MKKLATLVSAVALSATV--SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNL 59 MK++ ++ ++ S + A I + + + + ++ + +L Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQC-CGGVWREKVNNEMRQAQYQYKNVDL 59 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + ++N+ + + + R ++++ P + + V A++ A +A+IPVI DR+ Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKT 119 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 + I DNV G+ ++A K V+E+ G+ S ER GF + + + Sbjct: 120 PHYTASIGGDNVEAGREVARFLASKLDGKGTVVEITGLKDASPVIERHRGFHEVMKNYPG 179 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVG 238 + + +++ + +M+ L VF +D A+GA + G +++VG Sbjct: 180 IKVVTLESNWKLERAQELMKQYLDKGGHADGVFGHSDLGAIGAFLEAERRGIDKQMLIVG 239 Query: 239 FDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DG P +G V G+ AA+ G K +E A +L+G+ + + L Sbjct: 240 IDGLPGEWEGVDRVKRGQFAASYVYP--TQGEKIMELAMNILQGKPYKKDNVMKSFLATP 297 Query: 296 Q 296 + Sbjct: 298 E 298 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 159/295 (53%), Gaps = 4/295 (1%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M K T ++ SA+ + A + + + T ++PF+++L +G ++ A NL Sbjct: 1 MKNLKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLK 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 V + + AK++ +++D + ++I+P DS + +K A +ANIPVIT+D A Sbjct: 61 VSVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENS 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 ++VSHIA+DN GG +AG K+ G +V+ L G S+ R +GF+ AVA Sbjct: 121 KIVSHIATDNYGGGVVAGKLAVKQLGGKGQVVMLS-YPGISSVEARLQGFRDAVADTDIK 179 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD 240 ++A QP R + + N+L A+PD +FA D+M +GA A+ KS +V+GFD Sbjct: 180 IVAVQPGK-TREESMTSTINMLQANPDTDLIFAFGDDMMIGAGLAVTKQ-KSKAVVIGFD 237 Query: 241 GTPDGEKAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G P+G KAV++ + + Q D +G ++ L G++V+++YP+ L Sbjct: 238 GMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPIVPVLYT 292 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 143/301 (47%), Gaps = 12/301 (3%) Query: 6 LATLVSAVALSATVSANA---MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 +ATL+ +A + A++ + F+ S+K GA++ +++G + Sbjct: 118 VATLLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFR 177 Query: 63 DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA--T 118 +N+ +++ VQ +L+ P D+DA+ VK A++A +PV+ D Sbjct: 178 GPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNTD 237 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEG-AKVIELQGIAGTSAARERGEGFQQAVAAH 177 G+ VS++A+DN GGK+AG+ +A GE VI L+ G+ + +R EGF ++A + Sbjct: 238 PGDFVSYVATDNFEGGKLAGEAMANALGEKGGDVILLRYEQGSESTHQREEGFLYSIAEY 297 Query: 178 -KFNVLAS-QPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGK-SD 233 VL+S Q A ++ Q LL D + + A GALRAL+ Sbjct: 298 SNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTVCEPTAEGALRALRERKLAGK 357 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 V +V FD + ++++ G++ A + Q P +G + V+T L+GE + + + Sbjct: 358 VKLVTFDSSDSLRESLSAGEVNAIVLQDPVAMGYQAVKTMAAHLRGETPEQFIDTGVFVA 417 Query: 294 V 294 Sbjct: 418 T 418 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 10/276 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLG---YNLVVLDSQNNPAKELANVQDLTVRGTKI 85 + + + L+NPFFV + GA+KEA K+G + V+ S + ++ +++ T + Sbjct: 62 VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 ++IN DS + AV A QA VI +D + ++ + + ++NV G+I+ YIA + Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAI-EADIDATVTTNNVQAGEISCQYIADRL 180 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLA-SQPADFDRIKGLNVMQNLLT 203 V+ + G ++ +R +G + +A + +L+ Q A+ R GL VM +LL Sbjct: 181 KGKGNVVIVNGPP-VTSVIQRVDGCLKVLAKYPDIKLLSKDQNAEGSRDGGLRVMSDLLV 239 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK--LAATIAQL 261 P + AVFA ND +G A A + D +VG DG P+ +A+ G AAT Q Sbjct: 240 TFPKIDAVFAINDPSGVGVDLAANQAKRQDFFIVGVDGAPEAIEAIASGDSLYAATATQN 299 Query: 262 PDQIGAKGVETADKVLKGEKVQ-AKYPVDLKLVVKQ 296 P + ++ + +L G+K + + KL+ K+ Sbjct: 300 PRGMTQTAIQVGNDILHGKKPESPNILIPAKLITKE 335 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 256 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 161/323 (49%), Gaps = 31/323 (9%) Query: 3 MKKLATLVSAVALSATVSANA--------------------------MAKDTIALVVSTL 36 MK++ + + + A++A++ A K T LVV + Sbjct: 1 MKRILSAILSAAMAASLVACGSSQSHSSAPADTPAPSVPAESAADAPDDKLTFGLVVMST 60 Query: 37 NNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSD 94 N+ ++++LKDGAQ+ D +G LV N+ +++ +++L +L+ P DSD Sbjct: 61 NSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLDSD 120 Query: 95 AVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 A+ V+ A A IPVI +D + S IA+DNV GG++A + + + G +V+ + Sbjct: 121 ALAAPVEKAMDAGIPVIVIDSAVNTDKYTSFIATDNVAGGRMAMERLIESIGGSGEVVVV 180 Query: 155 QGIAGTSAARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFA 213 +AG + RG+G ++ A VL Q D+ + + +N++ +P+++ +FA Sbjct: 181 NALAGIPSNDARGQGAEEYAATVDGITVLPQQHC-LDQAEAMTATENVIIGNPNLKGIFA 239 Query: 214 QNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVET 272 + ALGA +A+ + GK ++ +V FD D K + DG + A + Q P ++G G+E Sbjct: 240 TFNRGALGAAQAIVSKGKAGEIKMVAFDADADEIKLLEDGTIDALVVQQPYEMGKIGIEY 299 Query: 273 ADKVLKGEKVQAKYPVDLKLVVK 295 A K L GE+V ++ + K Sbjct: 300 AVKALNGEEVPKTVAPEVVIATK 322 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN--NPAKELANVQDLTVRG 82 +K TI TLNN + + + + Q+ + LG + + ++L +++ +G Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK------GEVVSHIASDNVLGGKI 136 +++ P S+ + +A++ ANIPVI LD + G+ + +DN +GG++ Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 196 G+ +A+ +G K L+G+ G + +R GF A +++A Q A+++ +G Sbjct: 199 VGEEVAQMYPDGCKTAILRGVQGQTNDDDRYNGFLDK-AGDVVDLVAEQHANWETDQGYT 257 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLA 255 +QN++ A+ D+Q ++ +ND M +GA +A+ AG +D + + +DG +G + V DGK Sbjct: 258 AIQNIIQANKDLQVIYCENDLMGIGAYQAVDEAGLTDQIKIFSYDGVTEGLQYVVDGKFV 317 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +T AQ P ++G GV K+ G+ ++ +L+ + Sbjct: 318 STCAQQPIKMGKLGVANMAKIFAGKDAESYIDTGCELITSE 358 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 145/287 (50%), Gaps = 6/287 (2%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQ----KEADKLGYNLVVLDSQNNPAKE 71 +A+ K IA +V +L + FF+++ + A+ ADK+ ++ + N ++ Sbjct: 43 GGGQTASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQ 102 Query: 72 LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNV 131 + V+ ++I P DS+ + A+K AN A I V+T + +A G++VS++ + N Sbjct: 103 IQLVEQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDIVSYVGAQNF 162 Query: 132 LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFD 190 G + +K G KVI ++G AG S + ER EGF++A+ + +LASQPAD+D Sbjct: 163 DVGYSLATALFEKLGGQGKVILIEGKAGNSTSEERAEGFKEALKEYPGIELLASQPADWD 222 Query: 191 RIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKAV 249 R + VM+N L + + V +M LG + A+++AG+ +V + FD D A+ Sbjct: 223 RASAMTVMENCLQTYDQIDGVLTLTKDMGLGTIEAIKSAGRDKEIVSMTFDVDDDVISAL 282 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G L A+ Q + TA L G KV + + + +V + Sbjct: 283 KAGDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIMPITVVTAE 329 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 155/299 (51%), Gaps = 5/299 (1%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M L + ++A +S A A + IA++ + +NPFF + +GA+ +A +LGY + Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK- 119 V ++ K+ ++ R K ++++ SDA +K A A IP +DR+ + Sbjct: 61 VASHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREINET 120 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-K 178 G VS I S+N G ++ + G K IEL G + A R +G+ + H Sbjct: 121 GIAVSQIVSNNYQGAQLGAEKFVTLMGGKGKYIELLGRESDTNAHVRSQGYHDVIDEHSD 180 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 ++A Q A++ + + N M+++L A+PD+ V + ND MALGA AL+ AG++DV+VVG Sbjct: 181 MKMVAQQTANWSQTEAFNRMESILQANPDITGVISGNDTMALGAEAALKAAGRNDVVVVG 240 Query: 239 FDGTPDGEKAVN-DGKLAATIAQLPDQIGAKGVETADKVLK-GEK-VQAKYPVDLKLVV 294 FDG+ ++ +G + AT+ Q V AD+ LK G+ ++ K +D L+ Sbjct: 241 FDGSDYVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKTGKTGLEEKQLMDCVLID 299 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 159/316 (50%), Gaps = 23/316 (7%) Query: 1 MNMKKLATLVSAVALSATVSANA---------------MAKDTIALVVSTLNNPFFVSLK 45 M ++K+ +L A L+ + TI + TL + FF+ + Sbjct: 1 MRVRKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGSDKKDLTIGVSTITLQHQFFIDID 60 Query: 46 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ 105 +G +++A +LG ++V D + AK+ + ++D + +++ TD+ A+ AV+ A + Sbjct: 61 EGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNVDGMIVLGTDNSAIVPAVEGAFE 120 Query: 106 ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY----IAKKAGEGAKVIELQGIAGTS 161 +PV+T+D + S++ + + GK G+Y I +K G +++ + + Sbjct: 121 K-MPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKKYIDEKLGGKSEIAIVT-DLKSQ 178 Query: 162 AARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMAL 220 +R +GF+ A+ +L SQP +DR + LN ++NL+ ++PDV ++A + L Sbjct: 179 IQMQRIDGFKDALKGSANVKILNSQPG-YDREESLNTVENLIQSNPDVDIIYATAENSVL 237 Query: 221 GALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE 280 GA AL++A DV +VGFD T + + DG + A I Q P ++G VE K +KGE Sbjct: 238 GAKAALESAKNKDVKIVGFDLTEEASSGITDGTILAMIQQQPKEMGRLAVEAVVKAIKGE 297 Query: 281 KVQAKYPVDLKLVVKQ 296 KV+ PV L K+ Sbjct: 298 KVEKNIPVPALLYDKE 313 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 71/326 (21%), Positives = 155/326 (47%), Gaps = 31/326 (9%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKD-------------------------TIALVVST 35 M K+ ++S + L A I Sbjct: 10 MKKKRALRILSLILLCALTFTACKKNVGTPEDNAASKDENTEEKDKDEQESWKIGFSGID 69 Query: 36 LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDA 95 + NP+F++L+ ++E D L+V D + +P + + +Q++ G ++++P D + Sbjct: 70 MENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEGINAIILSPVDWEK 129 Query: 96 VGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 154 + +++ +A++ ++ +D Q + + V ++I SDN G + G+ + K+ +G KV L Sbjct: 130 ITPSLEALKEADVKIVNVDTQVKEMDYVDAYIGSDNYNAGVLCGEDLIKRCPDGGKVAIL 189 Query: 155 QGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF 212 + ++ ER GF++ +A + F ++A + + K L Q +L+ + D+ A+ Sbjct: 190 EC-PTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQKILSENSDIVAIM 248 Query: 213 AQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN--DGKLAATIAQLPDQIGAKGV 270 ND+MA+GA A+ A + +++ G DG+PD +K + + ++A T+AQ P +G Sbjct: 249 CGNDQMAVGAKTAMNVAEQGQILIYGVDGSPDIKKELKKTENQIAGTVAQSPISMGKDAA 308 Query: 271 ETADKVLKGEKVQAKYPVDLKLVVKQ 296 T +L G+ + + ++ ++ ++ Sbjct: 309 NTVLNILNGKDYEKEIKENVFMINQE 334 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 134/298 (44%), Gaps = 8/298 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKE-ADKLGYNLVV 61 M+ + + L A + I T ++ + ++ DG Q+E A L+ Sbjct: 1 MRLALIALLLLTLFAGCAGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIF 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 D+ N A ++ +++L G +L+++P +SD + ++ A + +PV+ +DR+ + Sbjct: 61 RDAHANSAVQVKQIEELLRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSPY 120 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FN 180 +++ DN GK G+Y A G K+IE+ G+ +S A +R G A+A Sbjct: 121 YTAYVGGDNYQVGKTVGEYAAALLGGNGKMIEITGLPRSSPASDRHRGLVDALATRPSIR 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGF 239 +A+ + + + ++ +L PD+ +FAQN+ MA+GA + V+G Sbjct: 181 RVATLNGQWQKDIAKSELRKVLPRFPDLDLIFAQNEVMAMGAREVCNDIFPDRKIRVIGV 240 Query: 240 DGTPDG---EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 DG P + V DG + AT G + A +L+ + Q + + ++ Sbjct: 241 DGLPGQFGDIQMVYDGHITATALYP--TGGEEAARVAMNILQKQPYQKENLLQTAIID 296 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 159/307 (51%), Gaps = 16/307 (5%) Query: 3 MKKLATL-----VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG- 56 M KL ++ A S + K + + P+ ++ + ++EA K Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60 Query: 57 -YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 Y+ ++ D+Q +K+ A+++DL R ++ + P + + + A++ A A IP+ +DR Sbjct: 61 TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120 Query: 116 QA---TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 +A VS + SD + G+ G+++AK A ++EL G AG+S A +R +GF+ Sbjct: 121 EAAGRPGEHFVSFLGSDFIAQGRRVGEWLAKATDGKASIVELTGTAGSSVAIDRAKGFRN 180 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA-HPDVQAVFAQNDEMALGALRALQTAG 230 A+A + ++A+Q ADF R + VM+N++ A D+ AV+A NDEMALGA++AL++AG Sbjct: 181 AIATYPNMKIIATQTADFSRAAAVRVMENIIQAKGSDITAVYAHNDEMALGAIQALKSAG 240 Query: 231 K---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 DVMV DG +A+ G+L ++ P G T ++ G+K+ + Sbjct: 241 MKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNPR-FGPLVFATMEEYFAGKKIPPRII 299 Query: 288 VDLKLVV 294 + +L Sbjct: 300 LKDRLFD 306 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 136/297 (45%), Gaps = 9/297 (3%) Query: 5 KLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLD 63 ++ + + A + A+ I + + + + + +EA + + Sbjct: 7 RILFFLLVLWGVAVACSRREARFRIGVSQCS-EDEWRRQMNSEILREAHFYEDVEVDIRT 65 Query: 64 SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV 123 + ++ ++ ++++L G +L++ P ++ + V+ A IPVI +DR+ + Sbjct: 66 AVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSDKYT 125 Query: 124 SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVL 182 +++ +DN GK G+Y+A V+E+ G+ G++ A +R +GF +A++A+ +L Sbjct: 126 AYVGADNYEIGKAVGEYVANVLHGQGDVVEISGLVGSTPAVDRHQGFVKAISAYPGIRLL 185 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDG 241 A + + ++K M LL+ P + V+AQND MA GA A G+ D+ +G D Sbjct: 186 AVEDGAWLQLKAGEKMDTLLSRFPHIDLVYAQNDRMAAGAYAAAAREGREKDMRFIGIDA 245 Query: 242 TPD---GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + V G+L AT G + ++ A +L + + +V + Sbjct: 246 LSGKDYGVEKVLAGELDATFIYP--TGGDRVMQIAMDILNKRDFPRETILGTSVVDR 300 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 159/299 (53%), Gaps = 8/299 (2%) Query: 4 KKLATLVSAVALSATVSAN----AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 ++ L + AL A + + + + T + F+ L+ G ++EA K + Sbjct: 8 RRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTV 67 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + + + A++ +++ TV+ +++ PTDS +G A+ ANQA+IPV T D +A + Sbjct: 68 RLDAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKE 127 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178 G VVSHIASDNV GG++AG+Y AK+ +V + + ER GF++A+ + Sbjct: 128 GAVVSHIASDNVAGGRLAGEYAAKRLNGRGQVAIID-QPYIQSVIERVRGFEEALKPYPN 186 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 V+A D R + L ++LL + + AVFA NDE A G + A++ AG+ + V+G Sbjct: 187 IRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRKGIFVMG 246 Query: 239 FDGTPDGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 +D + + K + GK L A IAQ P +IG + + L G+ V+ PV ++LV K Sbjct: 247 YDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVDK 305 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 152/293 (51%), Gaps = 8/293 (2%) Query: 11 SAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK 70 ++ A +A A+ + + + + + ++ Q EA+K L+ D QN Sbjct: 30 ASSAEAAGRKPKALTEIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNN 89 Query: 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT--KGEVVSHIAS 128 ++ V +G +++I P +S +K A +A IPV+ R + + + + Sbjct: 90 QVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAEEDLYETVMVA 149 Query: 129 DNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPA 187 D V G+ AG+++AK+ A++IEL G A R GF +A+A H ++ASQ Sbjct: 150 DFVWEGRRAGEWLAKQTNGKARIIELVGTPAADVAVMRKTGFAEAIAKHPDMKIIASQSG 209 Query: 188 DFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTP 243 DF R KG VM+ LL+AH ++ AV+A ND+MALGA++A+Q AG D++V+ D Sbjct: 210 DFTRTKGKTVMETLLSAHKGEINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAVK 269 Query: 244 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +A+ +GKL AT+ P G +T DK+++GEKV + V ++ ++ Sbjct: 270 PAFEAMMEGKLNATVECNPMH-GPLLFDTIDKIVRGEKVPKRTIVPGQIFERE 321 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 252 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 11/291 (3%) Query: 15 LSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELA 73 + A + K I +T P+ EA K L++ D ++ K++A Sbjct: 23 MPAGDAVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVA 82 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 +V++L + LL++P +S + V+ A A IPV LDR + + DN L Sbjct: 83 DVENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQYTQFVGGDNKLI 142 Query: 134 GKIAGDYIAKKAGEGAK----VIELQGIAGTSAARERGEGFQQ-AVAAHKFN-VLASQPA 187 G+ AG+Y + G K ++E+ G GT A +R +GF + +L Q Sbjct: 143 GRAAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKEPGIKNLLDKQSG 202 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTP-DG 245 D+ + + N+M L + + V+ ND MA GA A + AG+ ++ +G D P +G Sbjct: 203 DWKQDQAYNIMATALRNNEKIDLVYGHNDPMAYGAYLAAKDAGREKEIKFIGIDALPNEG 262 Query: 246 EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 V++G+L AT GA+G+ A K LKGEKV+ +D V ++ Sbjct: 263 VTWVSNGELTATFLY--ATPGAEGLRQAVKFLKGEKVEKTVTLDTLKVTEE 311 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 252 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 146/295 (49%), Gaps = 6/295 (2%) Query: 7 ATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN 66 A + + S +AL+V + F+ +++ GA+ A KLG L V + Sbjct: 27 AVFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEE 86 Query: 67 -NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-S 124 +PA + + + +LI PTD A+ ++ A +IPV+ +D K E+ + Sbjct: 87 FSPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIALA 146 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLA 183 I+SDNV GG++AG+ +A++ G KV+ + G S +R +GF++A+ + L Sbjct: 147 RISSDNVEGGRMAGEALAEQIGGKGKVLLISVKPGISTTDQRKQGFEEAIKQYPDIEYLG 206 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGT 242 ++ + D + ++ + L AHPD+ +F N GA ++ AGK D V VV FD + Sbjct: 207 TEYCNDDPTQAASITTSTLQAHPDLAGIFGANVFSGQGAGTGVRQAGKRDQVSVVAFDAS 266 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQ-AKYPVDLKLVVK 295 P + + G L IAQ P+ IG +GV+ A + L+ GE+ + + V + Sbjct: 267 PTQVEDLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGFTTVTR 321 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 9/278 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGTKI 85 IA+V + F+ S+ GA K + +L ++V +++ ++ V +G Sbjct: 42 RIAVVPKGTTHEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVSG 101 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++ P D+ A+ V+ A QA IPV+ D + VS +A+DN G++AG+++ K Sbjct: 102 IVLAPLDATALRAPVRAARQAKIPVVVFDSDLASDDHVSFVATDNEAAGRLAGEHLGKAI 161 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QPADFDRIKGLNVMQNLL- 202 GE KV+ L+ G+++ + R +GF AV A +AS Q + ++LL Sbjct: 162 GEDGKVVVLRYQEGSASTQHREKGFLDAVRAMPGVTVASENQYGGATTESAFHKSESLLL 221 Query: 203 ---TAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATI 258 A + VF N+ G L+AL+ V VGFD + A+ +G + A + Sbjct: 222 AQRAAEGAIAGVFTPNESTTFGMLQALRKTNVARKVKFVGFDASEKLLGALREGDIEALV 281 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q P +G V+T L GEKV A+ ++V +Q Sbjct: 282 VQNPFNMGYVAVKTMVAHLHGEKVAARIDTGSRVVTRQ 319 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 4/285 (1%) Query: 10 VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNN 67 V+ + S A I + NP+ V+ G + +G+ + ++ Sbjct: 63 VTGIGAQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADS 122 Query: 68 PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIA 127 +++ ++++ + ++++ DS+ + V+ A A + V+T+ A + + Sbjct: 123 VEEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRT-G 181 Query: 128 SDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQP 186 D G +A K G K I L+G AG S A ER G ++ + ++ASQ Sbjct: 182 VDYYESGYTMAKAVADKLGGKGKFIILEGPAGASNAIERLNGINTGLSEYEGIEIVASQT 241 Query: 187 ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGE 246 A+F R +G++V +NL+ + D+ AV A NDE ALGA++AL A SDV+V GFDG+ D Sbjct: 242 ANFKRTEGMSVTENLIQQYTDIDAVIACNDESALGAVQALTAANMSDVLVCGFDGSVDAT 301 Query: 247 KAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 AV +G + AT P G A K L + + Sbjct: 302 NAVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFP 346 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 14/298 (4%) Query: 12 AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKE 71 A + A I V L NP++ S G + A++ G +V+ D +++ ++ Sbjct: 25 VAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRAGAEEAGIEVVIADQKSSQQEQ 84 Query: 72 LANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNV 131 ++ DL +G L+I P A+ + + A+ IPV+ D T+G+ +I S+N Sbjct: 85 VSGSLDLINQGISALIITPVQPSALPSTIDAAHGEKIPVVVADIG-TEGDYDGYILSNNY 143 Query: 132 LGGKIAGDYIAKKAGEG---AKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPA 187 GG++A +++ +K G +V ++ AG+ ER GF + F +++S Sbjct: 144 EGGRLAAEHVVEKLGGTPGPHQVGVIELHAGSVVGEERVSGFVDRLGEEENFEIVSSLDG 203 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPD 244 + G Q++L+A+P++ ++A ND+ A+GA RA++TAG S ++GFDG+ Sbjct: 204 NDTVDGGFTAAQDMLSANPELDVIYAANDDSAVGASRAMETAGVSVANGFTLIGFDGSDP 263 Query: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV------QAKYPVDLKLVVKQ 296 + G ++ T+AQ P G K VETA +L GE +++V + Sbjct: 264 ALDLIEQGVMSGTVAQDPFGQGQKAVETALALLNGEDPGYSDEATKTIYFPVEMVTAE 321 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 159/282 (56%), Gaps = 4/282 (1%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 +A K TI + + ++ F+V+ DG +K A GY LVVL++ N ++++ VQ+ Sbjct: 19 AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQN 78 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 L + ++ D+ A V A ANIPVI +D++ +G+V + I SD+V Sbjct: 79 LVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRP-QGDVTTFIGSDSVKASTEL 137 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 DY+AK+ G + ++G+ G+S ER +G + + V+++ AD+D K N Sbjct: 138 CDYLAKQMGGKGNLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADWDENKAYN 197 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAA 256 V Q++LTA+P++QA+FAQND MALGA +A AG+S++ +V DG P A+ G++ A Sbjct: 198 VAQDVLTANPELQAIFAQNDGMALGAAKAAAQAGRSNLKIVSVDGFPQVYDAIESGQVLA 257 Query: 257 TIAQLPDQIGAKGVETADKVLKGE--KVQAKYPVDLKLVVKQ 296 T++Q P Q+G V TA K + GE +Q + LV K+ Sbjct: 258 TMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKE 299 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 158/297 (53%), Gaps = 11/297 (3%) Query: 9 LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP 68 + +A A A + + + NNP+ ++ + A K G+ LV+ D+ ++ Sbjct: 33 VATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQLVMTDANSSN 92 Query: 69 AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG------EV 122 +K+++++Q++ + +L+ P + + V A +A IPVI +DR + + Sbjct: 93 SKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSVAKAGRDY 152 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNV 181 ++ I SD + G A D++ K G AK+IEL+G G SAA +R +GF + +A + + Sbjct: 153 ITFIGSDFIDQGHRAADWLVKATGGKAKIIELEGTTGASAANDRKKGFDEIIAKNPGMTI 212 Query: 182 LASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVG 238 +ASQ DF R KG VM+ LL AHPDV AV+A NDEMALGA+ A++ AGK D+ +V Sbjct: 213 IASQSGDFARDKGRQVMETLLQAHPDVTAVYAHNDEMALGAIAAIKAAGKQPGKDIQIVT 272 Query: 239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 DGT G A+ G+L A++ P G + A + KGEK+ V K K Sbjct: 273 IDGTKGGMDAIAAGELGASVQSSPF-FGPLACDVAQRYAKGEKIPTWVKVSDKFYDK 328 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 126/302 (41%), Gaps = 10/302 (3%) Query: 1 MNM--KKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GY 57 MN+ + L ++A+ + I ++ + ++ D + E G Sbjct: 1 MNLPSRYLLLFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELSLHPGA 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 LV D+ NN ++ V+++ +G +L+I+P ++ + V+ IPVI +DR+ Sbjct: 61 KLVYADADNNSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDRKT 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 T ++ +DN G +A Y+ A ++E+ G+ G+S ER +GF + Sbjct: 121 TSNLYTCYVGADNYQIGYMASQYLGNTISGPANILEVMGLPGSSPTIERNKGFNDGLKKF 180 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVM 235 + + D+ + + + D+ VFA ND MA A + G S Sbjct: 181 PNLKIKSQVYGDWMKPNAERQLSKISDQLNDIDVVFAHNDNMAFAAQSVFKKLGIASQAK 240 Query: 236 VVGFDGTPDG---EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 +G D TP + +++G + A++ G + + TA K++ + + + Sbjct: 241 FIGIDATPGAGGGLQMISNGLIDASMLYP--TGGKEAITTAIKIMDKIPFSKELILPSLV 298 Query: 293 VV 294 + Sbjct: 299 ID 300 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 10/284 (3%) Query: 20 SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDL 78 A K I + + + P+ + D + A ++ + + D+ + AK++A+V++ Sbjct: 40 CKGADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENY 99 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 + +L+I+P ++ + VK A IPV+ LDR+ I DNV G AG Sbjct: 100 ITQQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDAYTGFIGGDNVQIGTEAG 159 Query: 139 DYIAKK-AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 Y+A+K G V+E++G+AG + ER +GF + A+ V+A+ D+ R KG Sbjct: 160 KYVAEKVLPNGGNVVEIKGLAGATPQAERNQGFATGIKANPKVKVVATASGDWLREKGQA 219 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTP---DGEKAVNDG 252 M LL A+P + V+A ND MA GA A + G+ ++ +G D P G KAV G Sbjct: 220 QMDALLKANPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIGIDALPIPSGGIKAVEQG 279 Query: 253 KLAATIAQLPDQIGAKGVETADKVLKG-EKVQAKYPVDLKLVVK 295 +L AT + G + + A K+L ++ + +L+ K Sbjct: 280 RLTATFTYPTN--GKEAIAAAKKLLVDCGTIEKTQTLPTRLIDK 321 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 154/287 (53%), Gaps = 10/287 (3%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 ++ S T+ S NP+ V+L + Q+ AD+ G N + D+ ++ A +AN++ Sbjct: 40 SSGSKEIGPDLTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIE 99 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKI 136 D+ + IL+I P + + + A + +PVI R T+GE V+ + SD G+ Sbjct: 100 DMLAKDLDILVIAPMEDTGLEAVLDEAAEKGVPVILSART-TQGEYVTTVYSDQAWEGER 158 Query: 137 AGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKG 194 + I +K + AKV+EL+GI GTS+ R +GF+ +A ++ Q A+F R + Sbjct: 159 CAELIGEKIPD-AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFSRQEA 217 Query: 195 LNVMQNLLTA-HPD-VQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAV 249 ++ M N+L A PD + AV+ NDEMALGA++A++ AG + D+ VVG DG + + V Sbjct: 218 MDAMANILQAKGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELV 277 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G++ T+ P G E K+L GE VQ + V +++ K+ Sbjct: 278 KSGEMLGTVQCSPKH-GPTVFEVIQKILDGETVQKETIVPDQVITKE 323 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 4/278 (1%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQK-EADKLGYNLVVLDSQNNPAKELANVQDLT 79 A K I N+ F L G Q EA++ +V +D++N+ ++A V+DL Sbjct: 40 AGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLI 99 Query: 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGD 139 +G ++ P D A V A QA +PV+ ++R + + E +++ SD++ G I + Sbjct: 100 AQGVDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE-DAYVGSDSLQAGTIQME 158 Query: 140 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVM 198 +A K+ + G G +A R G +Q V + V+ + R KG +M Sbjct: 159 EVAAVLKGKGKIAIMNGQMGHTAQINRTLGNKQVVDQYPGMEVVIEGTGGWSREKGKELM 218 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAAT 257 ++ + + AV A NDEMA+GA+ A + AG +++ G DGTPD ++ GKL + Sbjct: 219 ESWIESGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSKGKLTIS 278 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + Q G G+E A K+ KGE + + + + K Sbjct: 279 VFQDAKGQGQTGLEQAIKLAKGESAEKMTNIPYETITK 316 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 76/319 (23%), Positives = 147/319 (46%), Gaps = 24/319 (7%) Query: 1 MNMKKLATLV---SAVALSATVSANAMAKD-----------TIALVVSTLNNPFFVSLKD 46 M + LA + ++L+A S K +A + + + F+ + Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA 106 G +K+A + G+ +LD Q + +++ +Q +G + + P +++A+G A+ N+A Sbjct: 61 GFEKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEA 120 Query: 107 NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARER 166 +PV +DR+ +GEVVS + +DNV G+ + + K GE V+ +QG+ + +R Sbjct: 121 GVPVFCVDRR-GEGEVVSTLETDNVKAGEAMAEQLVKDYGEDVDVLIIQGVLSDTPTLDR 179 Query: 167 GEGFQQAVAAH-KFNVLASQP-ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 224 +G + + + ++ ++ L +N L +PD+ +F D + G + Sbjct: 180 TQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLETNPDLDVIFTCTDALVPGIVA 239 Query: 225 ALQTAGKS-------DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL 277 AL+ AGK+ V + DG + K + DG + T +Q P Q G V++ L Sbjct: 240 ALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQFGIDTVKSMKTYL 299 Query: 278 KGEKVQAKYPVDLKLVVKQ 296 G KV+ K + +V + Sbjct: 300 DGGKVEEKVYYNGDVVTDE 318 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 249 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 17/270 (6%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL------DSQNNPAKELANVQDLT-VR 81 IA + T ++PF+ ++ G Q A +LG +V ++ + K+++ + +L Sbjct: 80 IAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNN 139 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI 141 L+I P DS + ++ A Q I VI +D ++++ + DN GG+I G+++ Sbjct: 140 DLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQILTFVTFDNFEGGQILGEWV 199 Query: 142 AKKA------GEGAKVIELQGIAGTSAARERGEGFQQAVA----AHKFNVLASQPADFDR 191 +K ++ L+G ER +GF + + + +L + AD++ Sbjct: 200 IQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKSADWET 259 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 K + Q L P + + A +D+MA+GA A+Q A KS +++ GFDGTP G A+ Sbjct: 260 KKAKMITQAWLEKFPTIDVIMAADDQMAVGASEAVQEANKSGIIITGFDGTPYGLNAIKT 319 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEK 281 G++ ATI QLP + + L+ E+ Sbjct: 320 GQIDATINQLPRTQISLITQLMINSLEKEQ 349 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 249 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 14/304 (4%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-S 64 + TL +A++ A K TIAL+ + F++++ GA++ A +LG L+ Sbjct: 11 VLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGGP 70 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA------- 117 + +P ++ + + R +LI PTD + + +K A++A I +IT+D Sbjct: 71 EFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQ 130 Query: 118 ----TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 ++++ASDNV GG+IA +AK GE KV G S +R +GF++ Sbjct: 131 TGKGNADFPLAYVASDNVEGGRIAARALAKAIGEKGKVYVSNVKPGISTTDQREQGFKEE 190 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 + + VLA+Q D D K + + L +PD+ VF N A+GA ++ AGK Sbjct: 191 MKKYPGITVLATQYNDNDANKAASQLAAALARNPDLAGVFGANLFSAIGAANGVKNAGKR 250 Query: 233 D-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 V V FD + G + + Q P ++G VE A K L GEK+ +Y Sbjct: 251 GAVKVAAFDCPESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEKIPNRYGTGYT 310 Query: 292 LVVK 295 ++ + Sbjct: 311 VIDR 314 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 10/297 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDS 64 + + + A K I + ++ + + S+ + EA LVV+D+ Sbjct: 8 ILLWLFLILCFACSPGKKEKKYVIGVSQCSMTDIWRQSMIRDMEVEALNHPEIELVVMDA 67 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS 124 + +++ ++ + +L+I+ +++ V A +A IP I LDR+ E + Sbjct: 68 SQDNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILDRKINSDEYTT 127 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS 184 +I +DN G+ G YI+ ++E+ G G+S+A ER +GF A++ + Sbjct: 128 YIGADNYEIGRSIGMYISSLIKGETTILEIWGRRGSSSATERHQGFVDAMSIDPNVKIRE 187 Query: 185 QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG---KSDVMVVGFD- 240 + + + L + DV VFA ND MALGA A++ V +G D Sbjct: 188 LDGYWYKENAYEEVLK-LDSIEDVDIVFAHNDMMALGAREAIEERDSSLVGHVEFIGVDG 246 Query: 241 --GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G G +AV GKL A+ G ++ A ++L G+ KY + ++ K Sbjct: 247 LLGGGLGVEAVAQGKLDASFYYP--TGGGVAIKVAWQILSGQAYTKKYALSTAMIDK 301 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVR 81 K TIALV+ TL NPFF ++ GA++ LG NL+V + + + +++ V DL Sbjct: 51 QDKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIEL 110 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-------VVSHIASDNVLGG 134 L+I P DS + +K A I VI +D + V I+ DN L Sbjct: 111 KVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAA 170 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF-NVLASQPADFDRIK 193 + + +K + +V ++GI G A R G +A + KF ++A++ A++ + Sbjct: 171 YKSTKVLTEKLTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDE 230 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGK 253 + L +P++ A+F ND MALG + LQ+ GK +V VV FD P AV G Sbjct: 231 AFELAAKLYNKNPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGV 290 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 L AT+ Q + G +G+ +A+ +L G+K K ++ K++ K Sbjct: 291 LLATVDQDAAEQGYQGILSANNILSGKKTPLKITIEAKIITK 332 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 92/276 (33%), Positives = 146/276 (52%), Gaps = 9/276 (3%) Query: 28 TIALVVST-LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKIL 86 T+ S NPF ++ + EA K G L+ +++Q+ +K++++VQDL +G +L Sbjct: 82 TVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKGADLL 141 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKG---EVVSHIASDNVLGGKIAGDYIAK 143 +I P +SD ++ A+ IP++T+DR+ G + VS I SD V G+ A D + + Sbjct: 142 VIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYVSFIGSDFVEQGRRAADKMIE 201 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNL 201 G +V L G AG + ER +GF+ VA V+ Q DF R KG +V + L Sbjct: 202 ATGGKGEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKGQSVTEQL 261 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGKSD--VMVVGFDGTPDGEKAVNDGKLAATIA 259 + + P ++ ++A+NDEM LGA+ AL++AGK V +V DGT + K + DG ++ I Sbjct: 262 IQSKPGIKGIYAENDEMGLGAVNALKSAGKKPGAVKIVTVDGTRNAVKQIVDGWISGVIE 321 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P G +T D KGE+VQ + K Sbjct: 322 SNPR-FGPLAFQTLDTFTKGEEVQQDIVIKDSAYDK 356 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 85/279 (30%), Positives = 147/279 (52%), Gaps = 9/279 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNN--PAKELANVQDLTVRG 82 K + LV+ +L NPF++ ++ GA++ A++LG L+V N ++++ + + G Sbjct: 34 DKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDEQLAAG 93 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-------VSHIASDNVLGGK 135 L+I P DS A+ + AN+ + ++ +D + + + ++ DN GG Sbjct: 94 IDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDNEFGGY 153 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL 195 AG +A+ AG AK + ++G ARER +G ++A+ + V+AS+ A + Sbjct: 154 EAGKILAELAGPDAKALIIEGPRSAINARERRDGARRALQENNIEVVASEVASWKLESAY 213 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 + QN+ +P++ +FA ND MALGAL Q G +D ++ GFD PD AV +G+LA Sbjct: 214 ALTQNVHARNPELNVIFAANDMMALGALLYAQEHGLNDWLIAGFDNIPDARAAVREGRLA 273 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 TI Q D+ G +GV TA +L + V V +++ Sbjct: 274 VTIDQQADRQGYQGVATAVDLLNDKAVDDVVLVKTRVIT 312 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 19/305 (6%) Query: 3 MKKLATLVSAVALSATVSANA-------MAKDTIALVVSTLNNPFFVSLKDGAQKEADKL 55 M KL A AL+ A + + + + + + A Sbjct: 1 MTKLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDA 60 Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 G L D+Q ++ ++ + ++ +P ++ A A IPV+ DR Sbjct: 61 GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 116 QATKGE---VVSHIASDNVLGGKIAGDYIAKKA---GEGAKVIELQGIAGTSAARERGEG 169 + V+ + SD V G+ AG ++ +K ++ELQG G++ A +R +G Sbjct: 121 AVNTKDTSLYVTFMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQGTVGSAPAIDRKKG 180 Query: 170 FQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA-HPDVQAVFAQNDEMALGALRALQ 227 F++ V A F ++ SQ DF R KG VM+ L A + ++A ND+MA+GA++A++ Sbjct: 181 FEEVVKADPKFKIIRSQTGDFTRAKGKEVMEAFLKAEGRKINVLYAHNDDMAIGAIQAIE 240 Query: 228 TAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQA 284 AG D+ ++ D +A+ GKL T+ P +G + + + G+ V Sbjct: 241 EAGLKPGKDITIISIDAVKGAFEAMMAGKLNVTVECSP-LLGPQLMAAVKDIKAGKTVPK 299 Query: 285 KYPVD 289 + + Sbjct: 300 RIVTE 304 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 149/286 (52%), Gaps = 7/286 (2%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 S + A + T+NNPFFV L +G +KE + G LV+LD+Q N K+ ++ Sbjct: 29 SPQSDSTADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGDRLVILDAQFNSLKQKNDL 88 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE---VVSHIASDNVL 132 DL ++ + +NP + + + ++ AN+ +P+I +D K + +V +ASDNV Sbjct: 89 SDLILQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPVKKADEELIVCTVASDNVR 148 Query: 133 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 G++A +AK A+++ L ++ A +R GF+ + H +L Q A Sbjct: 149 AGELAAQALAK-VNPKARLVVL-HLSVNKACIDRVAGFKTELEKHPEMKILDVQEAQGTT 206 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVN 250 VM++L+ +PD+ AVFA ND ALG + AL +A K V +V DG+ G KA+ Sbjct: 207 EGARPVMRDLIGRYPDLDAVFAINDPNALGVISALDSANKLDQVTIVTVDGSQAGIKAIQ 266 Query: 251 DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 GKL +T AQ P +IG E LKGE V+ V ++L+ + Sbjct: 267 AGKLHSTSAQFPREIGKIAAEKMLAHLKGEPVEKDVKVRVELITAE 312 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 157/311 (50%), Gaps = 18/311 (5%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M K S + +S +A A A+V+ TL+NPF+V +K G + EA LG ++ + Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF 60 Query: 63 DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-- 118 S + + +L +DL+ + K + P S + V A + I ++ LD + Sbjct: 61 ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMD 120 Query: 119 -----KGEVVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQ 172 G V + + +DNV G +I K G EG +V ++G AG ++ R G + Sbjct: 121 NLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATE 180 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 A ++ASQPAD+DRIK L+V N+L +P+++A++ ND MA+G +A+ AGK Sbjct: 181 AFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK 240 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV------QA 284 V+VVG DG P+ K V G++ AT+AQ P IGA G++ K KV Sbjct: 241 TGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPE 300 Query: 285 KYPVDLKLVVK 295 VD LV + Sbjct: 301 FKLVDSILVTQ 311 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 19/308 (6%) Query: 4 KKLATLVSAVALSATVSANAMAKDT-----------IALVVSTLNNPFFVSLKDGAQKEA 52 KK A +AV L+A A + DT I L+V ++NPFF ++ GA++ A Sbjct: 6 KKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAA 65 Query: 53 DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 +G D+Q + A + + +G +++I+ D + + A++ A QA I VI Sbjct: 66 ASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIA 125 Query: 113 LDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 +D A + V + +D V G+ + Y+ ++ G V+ + G R+R G Sbjct: 126 VDTPAKSADAV--VMTDAVQAGEKSCQYLFEQMGGKGNVLLVDGTP-LQTIRDRITGCNN 182 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 V V+ Q + DR GL V ++LTA PDVQ +F ND ALGA+ A+Q A K Sbjct: 183 VVKKFPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQGIFGMNDPSALGAVLAVQQAHK 242 Query: 232 -SDVMVVGFDGTPDGEKAVND--GKLAATIAQLPDQIGAKGVETADKVLKGEKV-QAKYP 287 V V G DG+P+ + T Q P ++ K VE A ++ + + Sbjct: 243 AGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNIIDNKPPAETTIL 302 Query: 288 VDLKLVVK 295 + +LV + Sbjct: 303 IPSELVTR 310 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 11/302 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M K + A+ + T A K I + + + + L D + + L +L+ Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQCSEDI-WRDKLNDELKM-GEYLNDSLI 58 Query: 61 V--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 V S ++ + V G +L+++P A+ +V+ A IPVI DR+ Sbjct: 59 VKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTN 118 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + + I DN GK G +IA++ +++E+ G+ G+S A ER GF A+ + Sbjct: 119 SDKYTAFIGCDNYTIGKSMGTFIAQQLQGKGRIVEISGLEGSSPALERHRGFMDAIKPYP 178 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMV 236 V+AS+ ++ G+ M+ +L D VFA ND +A GA A + K + Sbjct: 179 GLQVVASEEGNWKEEGGIQAMKRILKQTQDFDYVFAHNDCLAWGAYVAARQMRVKRNYKY 238 Query: 237 VGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 G DG G + V DG A+ G + + A K+LK + + + ++ Sbjct: 239 TGVDGMATEGGGLELVRDGIFEASYLYPTK--GDEVIALAMKILKHQPYERDNYLSTSII 296 Query: 294 VK 295 + Sbjct: 297 TQ 298 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 132/272 (48%), Gaps = 4/272 (1%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + ++ F + LK+ ++A G ++ LD++ + ++ + + ++ Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIV 129 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 + D ++ V+ A +A IPV+ ++R +V+ + SD+ G++ G+++A Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL-SDDREAGRMQGEFMASHLPP 188 Query: 148 GAKVIELQGIAGTSAARERGEGFQQAV--AAHKFNVLASQPADFDRIKGLNVMQNLLTAH 205 AKV+ L G + S A +R EGF++A +LAS + + +G+ M L+ Sbjct: 189 NAKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLWLSFF 248 Query: 206 PDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 P++ V A NDEMALGA++AL+ A + + +V G D TP G AV G+L+ T+ Q + Sbjct: 249 PEINGVVAANDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAGELSQTVKQDAEG 308 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 A V L G+ + + ++ Sbjct: 309 QAAGAVTLVQGFLSGKAPTESLDIPFTSITRE 340 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 155/308 (50%), Gaps = 19/308 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 MK++ L + +A++ + SA A + I + +S ++ F L++ L N+ + Sbjct: 1 MKRIL-LAAVMAINFSCSAGAES---IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQM 56 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 D+QN+ A++ + VQ+ G +++NP D+DA K+A A +P++ ++RQ + Sbjct: 57 EDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVD 116 Query: 122 VV----SHIASDNVLGGKIAGDYIAKKA-----GEGAKVIELQGIAGTSAARERGEGFQQ 172 + + IASD + G + + + G+ A V+ + G A+R+R + Sbjct: 117 RLPETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHD 176 Query: 173 AVAAHK---FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTA 229 +A + V+ Q A++ R + +N+M N L+A AV A DEMA+GA++A+++A Sbjct: 177 VIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSAGIQFDAVIANADEMAIGAIQAMRSA 236 Query: 230 GK--SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 G D +V G DG DG + + G L T+ Q GA ++TA + +G+K Sbjct: 237 GLPVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALDTALMLARGKKTDRTIW 296 Query: 288 VDLKLVVK 295 V +L+ Sbjct: 297 VPFQLITP 304 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 136/301 (45%), Gaps = 9/301 (2%) Query: 1 MN-MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYN 58 M +K L + ++ + + K + + + + + + EA Sbjct: 1 MKYLKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEASMHPDII 60 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 L + D++N+ ++A++++ G +L+++P S + A++ A A IP I +DR+ Sbjct: 61 LEIKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKIE 120 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 +++ ++N+ G+ A YI + A +IE+ G G+S A ER GF++ + + Sbjct: 121 GQNFTAYVGANNIEIGRNAAKYILSHSSGKADIIEITGQEGSSPAYERSMGFKKTLDSVP 180 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 V D+++ + + +LL + +FA ND MALGA ++ ++ + Sbjct: 181 ELKVRHVIKGDWEKTSIQSKLSDLLDSVKAPDYIFAHNDRMALGAWEVARSKSLEEEINI 240 Query: 237 VGFDGT---PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +G DG G + V D L ATI + + ++ A+ +L GE V + ++ Sbjct: 241 IGVDGVFGPNGGIQLVKDNILNATILYPTGGM--ETIKLAEDILNGENVNKNNILRTVII 298 Query: 294 V 294 Sbjct: 299 D 299 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 147/305 (48%), Gaps = 11/305 (3%) Query: 1 MNMKK-----LATLVSAVALSATVSANAMAKDT-IALVVSTLNNPFFVSLKDGAQK-EAD 53 MN K + + +AL A A + T I + + ++ F V++KD A Sbjct: 41 MNKPKKAVQGVLFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAK 100 Query: 54 KLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 + L+ +D++ + K+L +Q+ ++ +++ P ++DA +A I ++ L Sbjct: 101 QDNLELIFVDAKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYL 160 Query: 114 DRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 +R+ T + V+++ S+ + G+ Y A + +G + + G+ AA R +G + Sbjct: 161 NRRPTYLPDGVAYVGSEELRFGEEQAKYAASHS-DGGNIGIIMGMMTVEAAILRTQGVED 219 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 +N++ Q A + R +G+ VM+N + + + + + ND+MALGA++AL+ AGK Sbjct: 220 FFKEKPEYNIIRKQTALWQRSQGMVVMENWINSGDKLDIIISNNDDMALGAIQALRAAGK 279 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDL 290 D +V+G D TPDG A+ +G L AT+ Q ++ A + + Sbjct: 280 LDDTIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAIDAALSGINKTPRDKITWIPA 339 Query: 291 KLVVK 295 +LV K Sbjct: 340 ELVTK 344 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 151/303 (49%), Gaps = 12/303 (3%) Query: 3 MKKLATLVSAVALSATVSA---NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL---- 55 MKK+ L+ A L + + + + L + + + + +L A+ +A L Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 + + + +NP+ ++ NV+DL +G +++ P +SDA+ +A IP++ +DR Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 116 QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 + T + DN G AG+Y ++ G KV+E+ G S ++R +GF++A+ Sbjct: 121 ELTNDAATVVVKGDNYGAGVNAGEYFMEQLGGNGKVVEIAG-PSNSVTQQRSDGFREAIE 179 Query: 176 AHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV- 234 ++ASQ +F L VM+N+LT+ P++ AV+ Q+D MALG L+A+ A ++D+ Sbjct: 180 GSDIEIVASQSGEFSTETSLQVMENILTSQPEIDAVYTQDDGMALGVLQAINEANRTDIQ 239 Query: 235 MVVGFDGTPDGEKAVN-DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ-AKYPVDLKL 292 + G G+ D + + DG + AT P + +GV + GE A+ V Sbjct: 240 FITGVAGSKDVYEIIMDDGLITATFLYSP-LMVKEGVIIGADLANGEDPDSAEVVVPATP 298 Query: 293 VVK 295 V K Sbjct: 299 VTK 301 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 23/308 (7%) Query: 3 MKKLATLVS---AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD-KLGYN 58 M K+++ + + + ++ + I + + + + L Q + G Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCSEDI-WRDKLNQELQTATYMEDGVT 59 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + + +N +++ ++ G +L+I+P + A+ V A + IPVI DR+A Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + + I +DNV G+ GDY+A++ VIEL G+ G+S A ER GF + ++ + Sbjct: 120 G-KYTAFIGADNVEVGRQMGDYVARQLDYHGNVIELMGLKGSSPAIERHRGFIERISRYP 178 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHP-----DVQAVFAQNDEMALGALRALQTAG-- 230 ++ S D+ + G +Q H + VFAQND MA+GA + AG Sbjct: 179 GIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAMGA----REAGLL 234 Query: 231 KSDVMVVGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 + G D P G K V D L+A+ G ++ A +L Q + Sbjct: 235 PKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR--GDLVMKLAMNILNHRPYQKENL 292 Query: 288 VDLKLVVK 295 + LV Sbjct: 293 LQSALVTP 300 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 157/298 (52%), Gaps = 5/298 (1%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKK+ L +A+A + + + I L PF V ++ A K A +LG NL VL Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122 DSQ + K++A++++ RG + +++P D +AV AV A +PV+TLDR + Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDKK 120 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FN 180 V H ++N GG+ GD++ + GA ++ L G G+S+ ER +G + ++ A + Sbjct: 121 VPHFGANNYKGGQAIGDFVKARFPNGADIVLLTGQPGSSSNIERTQGIRDSLKAGGSKYR 180 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG--KSDVMVV 237 ++A Q ++ R +G+ +++++L + P Q + + ND+MALGA+ ALQ+ G +VMV Sbjct: 181 LVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQSQGLKPGEVMVT 240 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 GFD P+ V DG LAAT Q P + + ++ + ++ K Sbjct: 241 GFDAVPEALARVRDGWLAATADQRPGYAVTQAMTQLTNNIRTKSAITGADYPPTMITK 298 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 137/302 (45%), Gaps = 9/302 (2%) Query: 3 MKKLATLVSA--VALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNL 59 MKK T + A V LS+ + A K I + + + F+ +++G ++ + G +L Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 60 VVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 ++ ++ +Q T G ++I PTD + V+ A + I V+ +D Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + +DN G++A +A+ G+ +V+ L+ +AG+++ +R GF ++A+ Sbjct: 121 DGSGHLQFVTTDNHASGQLAARQLAELMGQRGRVVLLRTVAGSASTDDRARGFIDYLSAN 180 Query: 178 --KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 +++A K + LL D A+FA N+ G LRAL+ AG + Sbjct: 181 APAISIVADVYGGGSAGKARHSASALLAKSADFDAIFAVNESATDGMLRALREAGLAGRK 240 Query: 236 -VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV-QAKYPVDLKLV 293 +GFD TP + + ++ I Q PD++G ++ L+ + ++ LV Sbjct: 241 RFIGFDSTPFLLEGLEKKEIDGLIVQDPDRMGYLAIKAVVAALRNRPIKESVIHTGTTLV 300 Query: 294 VK 295 + Sbjct: 301 TR 302 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 177/300 (59%), Gaps = 11/300 (3%) Query: 3 MKKLATLVSAVALSATVSAN------AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG 56 ++K L++A L+ + + A + L +ST NPFF+ ++ GAQ +A++LG Sbjct: 2 LRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELG 61 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 +L VLD+ ++ + A + D G ++NP DS+A+ AV N+ IP IT+DR Sbjct: 62 IDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVDRT 118 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 T +V + I S+N GG A +AK +VI L+GI G+S++ ER EGF QA+A Sbjct: 119 ITGADVAALIDSNNTEGGAAAASVLAKAIRAQGEVIVLRGIEGSSSSAERYEGFTQAMAE 178 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 H ++A++ ADFDR +++ +LL HPDV +FA+NDEMALGA+ AL DV Sbjct: 179 HPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAGIFAENDEMALGAVDALGERAGKDVK 238 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 VVGFDGT +G +AV + KL ATIAQ ++GA +E A K+L GE ++ + +V + Sbjct: 239 VVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGKLLDGEAAES-VHTPVMVVTR 297 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 5/284 (1%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD---KLGYNLVVLDSQNNPAKELA 73 A + ++ +V ++ F +S+ DGA+ A + + ++ + +++ Sbjct: 46 AQAADPSVKTYNFVFIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQ 105 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 V+ G +LI P DS + A++ AN A IP+ T + +A G+V++ I DN Sbjct: 106 LVEQAITDGADAILITPADSTGIVPAIEKANAAGIPIATPNTKAYGGDVLTWIGVDNYTV 165 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G G + + KV+ ++G AG S + ER +G+ A + +L SQPADF+R Sbjct: 166 GYELGTALCEALEGTGKVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNRE 225 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV-VGFDGTPDGEKAVND 251 KG+ VM+N L +P++ V + N +M +GA+ A + G+ MV V FD D A++ Sbjct: 226 KGMTVMENFLQRYPEIDGVGSINKDMTMGAIEACKAVGRDKEMVQVTFDVDNDCLDAIDA 285 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G + T AQ A + G KV + + + LV K Sbjct: 286 GDILITGAQEEKSQIANAIYACLLACNGYKVAPEQYIPMTLVTK 329 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 146/302 (48%), Gaps = 11/302 (3%) Query: 3 MKKLATLVSAVALS-----ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 +++L V + A +A A A+ TLNNPFFV L DG ++ D+ G Sbjct: 20 LRRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGD 79 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 LV LD+Q + K+ ++ D+ + + +NP + ++V + A A IPVI +D Sbjct: 80 RLVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPV 139 Query: 118 TKGEVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 ++V + +ASDNV G++A + AKV LQ A +R GF +A Sbjct: 140 PDADLVLAQVASDNVAAGRLAAQALGDARP-QAKVAILQYSV-NKACVDRVAGFTDVLAK 197 Query: 177 --HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SD 233 ++A Q VM++LL PD+ AVF ND A+G + A+ AG+ Sbjct: 198 SFPGATIIARQDVKGTSEATRPVMRDLLGRFPDLDAVFPINDPGAIGCVSAIDAAGRSGK 257 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 V+VV DG+ + + + +G + +T AQ P +IG+ A L G+ V + V + LV Sbjct: 258 VLVVTVDGSREAAQFILNGGIHSTSAQFPKKIGSLAAGAAYDHLAGKPVDKEIKVPVTLV 317 Query: 294 VK 295 K Sbjct: 318 TK 319 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 71/293 (24%), Positives = 143/293 (48%), Gaps = 11/293 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAK--DTIALVVSTLNNPFFVSLKDGAQKEADKLGYN 58 M + + L+++VAL+ +++ A A+ TI V+ ++P + + GA+K AD+ G Sbjct: 6 MGRRIVLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCK 65 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 ++ D +++P+ + +++ + +G +++ PT SD + AVK N A IP++ DR+ Sbjct: 66 VIFADGKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQ 125 Query: 119 KG----EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV 174 + + ++ D V G I G+ K G ++ ++G G + +RG F + + Sbjct: 126 THGQPIKWEALVSWDMVKSGTIGGEQTVKAIGGKGNIVVVEGTPGAGSTIDRGNAFYEVI 185 Query: 175 AAHK-FNVLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGK 231 + +LA PA+F+R KG V +N+L ++ A++ DEM G L+A++ AG+ Sbjct: 186 EKYPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAIKAAGR 245 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ 283 + ++ DG + + ++ PD V ++ G Sbjct: 246 LGEFKIISVDGQKEAMDLLRAREIDYEAIFHPDDQA-VAVRILCDIVNGRTPD 297 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 143/323 (44%), Gaps = 29/323 (8%) Query: 1 MNMKKLATLVSAVALSATVSA---------------NAMAKDT----IALVVSTLNNPFF 41 M KK LV V + + ++T I LV+ + NP+F Sbjct: 1 MGWKKRGWLVIGVLCGLVACSESIPRVDNRSHSAFSQSAGQNTSPARIVLVMKSPTNPYF 60 Query: 42 VSLKDGAQKEADKLGYNLVVLDSQNNP--AKELANVQDLTVR-GTKILLINPTDSDAVGN 98 L +GA + + G +L + + + +++ + ++ + ++I PTDS + Sbjct: 61 SELANGASRAQLETGIDLSIKVAHEDDALEQQIRLIDEVIAKHQADAIVIAPTDSIRLVP 120 Query: 99 AVKMANQANIPVITLDRQATKGEVVSH-------IASDNVLGGKIAGDYIAKKAGEGAKV 151 + A +A I VI + + V + I+ DN +A+ G+KV Sbjct: 121 VLARARKAGIHVINIGNRLEPRIVALYGMPVVPLISIDNASAAYQVAGKLAEGLPRGSKV 180 Query: 152 IELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 ++G+ GT+ R+R EG QA + V+A Q A + + V LL +PD++A+ Sbjct: 181 AIIEGLLGTNNTRQRTEGALQAFSEAGLRVVAKQSARWKGDEAYQVTAQLLRDYPDLRAI 240 Query: 212 FAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 F ND MALGA R L+ G + V + GFDG + A++ +L ATI Q + G V Sbjct: 241 FCSNDMMALGAARYLREKGITGVRLAGFDGITEARSALHQRQLVATIDQHASEQGYLAVR 300 Query: 272 TADKVLKGEKVQAKYPVDLKLVV 294 A + G + + VD +L+ Sbjct: 301 LAVDAIAGRPLAEETLVDTELLT 323 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 151/285 (52%), Gaps = 7/285 (2%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 T A A+ + + + L+ PFFV+++ + EA KLG + VLD+QNN +K+++++Q Sbjct: 28 MTGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQISDLQ 87 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-VVSHIASDNVLGGK 135 V+G K++++ PTDS A+ A + + VI++DR G+ V H+ +DNV GG+ Sbjct: 88 AAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKTAVPHVGADNVAGGR 147 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPADFDRIK 193 D++ K GA+V+ + G+S++ ER +G +AA F ++ Q A+ R + Sbjct: 148 AMADWVVKTYPAGARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQTANSKRDQ 207 Query: 194 GLNVMQNLLTAHPD--VQAVFAQNDEMALGALRALQTAGKS--DVMVVGFDGTPDGEKAV 249 L V QN+LT+ D + ND+MA+GAL A++ AG V V+GFD P+ + Sbjct: 208 ALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKVIGFDAIPEALARI 267 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G++ AT+ Q P + A +K + L+ Sbjct: 268 KAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVSLKPVLIT 312 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 164/298 (55%), Gaps = 6/298 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M K L+ ++ + A ++ A A+ I + T +PF+++L D +KEA L Sbjct: 1 MFRKSLSRILFSGVALAMMAGAASAEG-IGASLLTQQHPFYIALADAMKKEAQAENVPLE 59 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 V + + +K+LA+V+D +G +++I+P DS V +A+ A +A I VIT+D A Sbjct: 60 VSIANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANNV 119 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 +V S + +DN GG+ A + +AK GE V + + +R EGF++ +A + Sbjct: 120 DVTSFVGTDNFAGGEKAAELMAKTIGEKGNVAVID-YPTVQSVVDRIEGFKKGIAKYPDI 178 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVG 238 ++A QP R + L+ QN+L A+PD+ +F D+ AL A A+++A V V+G Sbjct: 179 KIVAIQPG-ITRPEALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAKLENQVKVIG 237 Query: 239 FDGTPDGEKAVN-DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 FDG + AV D + IAQ PDQ+G VETA KV+KGE+V AK P+ +V K Sbjct: 238 FDGMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPIVPGVVTK 295 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 140/287 (48%), Gaps = 11/287 (3%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQ---KEADKLGYNLVV----LDSQNNPA 69 + + V N ++ +LK+G + ++ + GYN+ + + + Sbjct: 61 LGAMPKVEGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQ 120 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASD 129 +L+ V+D+ + LL++P + V+ A + NIPVI ++ K + Sbjct: 121 GQLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGIIK-NADIFVGPK 179 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPA 187 ++ G++A ++I+KK G +V + G+ AAR+R GF+ + ++ ++ Q A Sbjct: 180 AIMNGELAAEWISKKIGGEGEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVKIVEKQNA 239 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEK 247 D+DR K ++ + + +P+++A+F ND MALG A+ A K D++VVG DG + + Sbjct: 240 DWDRAKAKDLAEIWIKKYPNLKAIFCNNDVMALGVQEAV-NASKRDILVVGVDGIKEAYE 298 Query: 248 AVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 ++ G++ AT+ P G VE A + L G+++ L+ Sbjct: 299 SIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLPRVIWTPQALID 345 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 86/327 (26%), Positives = 134/327 (40%), Gaps = 38/327 (11%) Query: 3 MKKLATLVSAVALSATVSANAM------------------------AKDTIALVVSTLNN 38 KKL L+ +L A TI + Sbjct: 2 KKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAES 61 Query: 39 PFFVSLKDGAQKEA-DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 97 + V+ + +K G+ L+ D+Q ++ V+D + ++ I P Sbjct: 62 DWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGWE 121 Query: 98 NAVKMANQANIPVITLDRQA---TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAK---- 150 + A A+IPVI +DR + SD G A +++ E K Sbjct: 122 TVLGEAKDADIPVIIVDRMIKVSDDSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKTDKQ 181 Query: 151 -VIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDV 208 V+ LQG G+SA R +GF + + FN+LA Q +F + KG VM++ L + D+ Sbjct: 182 NVVVLQGTIGSSAEIGRTKGFGDTIKKYDNFNILAQQTGEFTQAKGQEVMESFLKQYNDI 241 Query: 209 QAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 265 V AQND MA GA+ AL+ AGK DV +V FD K++ G + ++ P Sbjct: 242 DVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDMNVSVECNPLH- 300 Query: 266 GAKGVETADKVLKGEKVQAKYPVDLKL 292 G + E A K++ EKV+ VD K+ Sbjct: 301 GPRVAELAKKLMNDEKVEKIQYVDEKV 327 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 166/305 (54%), Gaps = 15/305 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK+ TL S +A+ V + ++ A+++ TL+NPF+V++K+G + EA LG ++ + Sbjct: 1 MKRFKTLKSCLAILGLVCSVSVYSAEYAVILKTLSNPFWVAMKEGIENEAKALGVDVDIF 60 Query: 63 DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-- 118 S + + +L +DL + K + P + A + I ++ LD + Sbjct: 61 ASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIK 120 Query: 119 -----KGEVVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQ 172 KG V + I +DNV G A +I K G EG +V ++G AG ++ R G ++ Sbjct: 121 NLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGGEVAIIEGKAGNASGEARRRGARE 180 Query: 173 AV-AAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 + ++ASQPAD+DRIK L+V N+L+ +P+++A + ND MA+G +A+ AGK Sbjct: 181 VFVKSSSIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYVANDTMAMGVAQAVINAGK 240 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQAKYPVD 289 ++VVG DG P+ K V++ KL ATIAQ P IGAKG++ + G+++ V+ Sbjct: 241 QGKILVVGTDGVPEARKMVSERKLTATIAQDPAMIGAKGLKLLVDAARAGKQIP--VDVE 298 Query: 290 LKLVV 294 K+ Sbjct: 299 PKIET 303 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 76/274 (27%), Positives = 138/274 (50%), Gaps = 5/274 (1%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKI 85 K T+NN F+ + + + + +K G ++ LD + K+ ++ L R Sbjct: 44 KKLFGATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDA 103 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS-HIASDNVLGGKIAGDYIAKK 144 + +NP D AV + A +A IPVI +D Q + ++V+ I SDN G + + K+ Sbjct: 104 IFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIVSDNYKAGVLCAKEMMKQ 163 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLT 203 + A ++ L A +A +R GF + + + +LAS + L + ++ Sbjct: 164 -KDQANIVLLTHNA-ARSAVDRINGFLDTIKNNKNYKILASADTQGQIERALPKVDKIIE 221 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 + ++ V ND A+GAL AL + G + V+V G DG+P+G+K + +G + T AQ P Sbjct: 222 EYQNIDVVMGLNDPAAMGALAALDSKGAREGVLVYGIDGSPEGKKLIKEGMMTGTAAQSP 281 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q+ V A ++L+GEKV+ K + ++++ K+ Sbjct: 282 KQMADTAVNAAYQILQGEKVEKKKVISVQMITKK 315 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 74/302 (24%), Positives = 141/302 (46%), Gaps = 12/302 (3%) Query: 6 LATLVSAVALSA----TVSANAMAKDTIALVVS--TLNNPFFVSLKDGAQKEADKLGYNL 59 +A ++ VA+ S I + V + F+ L G + A++ G N+ Sbjct: 13 IAAILIVVAVVGIYKWAASQRTEKTVDIIVTVKAKSSAIDFWKVLITGVEDAANEFGANV 72 Query: 60 VVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 V+ + + ++ + +++ TD + + + +A I +IT+D + Sbjct: 73 TVIGPPSETEIDTQTEQLKQAIRQKPDAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRI 132 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGE--GAKVIELQGIAGTSAARERGEGFQQAVA 175 + +S IA+DN+ G+ AG+ +AK E +KV + + GTS+ ER +G +Q + Sbjct: 133 NSDDALSFIATDNIAAGEKAGEEMAKLLPESSSSKVAIMSYVYGTSSQLEREKGVRQWLE 192 Query: 176 AHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SD 233 H V ++ ++ K + + LL+ P ++ + N+ +GA RA++ G Sbjct: 193 GHSHIEVASTLYSEGRLEKAYELTKELLSEDPGIKGIVGLNEPSTVGAGRAIRDLGLSGK 252 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 V +VGFD + D K + G L ATI Q P +G V+TA + ++G+KV + ++ Sbjct: 253 VKLVGFDSSVDEVKLIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPKLIDTESVII 312 Query: 294 VK 295 K Sbjct: 313 NK 314 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 93/274 (33%), Positives = 142/274 (51%), Gaps = 2/274 (0%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 + TI L V+ L FF +K + E G ++ +D+Q N + +++ ++DL R Sbjct: 26 AKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLITRQI 85 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 L+ P + A G VK A A IPVI +DR A + IASD+V G K +Y+ K Sbjct: 86 DALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTFIASDSVAGAKALAEYVGK 145 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLL 202 ++ LQG GT+ +R +GFQ+ + V+A QPA++ + KG V Q+LL Sbjct: 146 VTDGKGRIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKGFAVAQDLL 205 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDV-MVVGFDGTPDGEKAVNDGKLAATIAQL 261 P++ F + D MALGA +A++ A S +VVGFDG G KAV G L AT+ Q Sbjct: 206 QRDPNITVFFGRADAMALGAAQAVKVANLSQPVVVVGFDGDVAGLKAVASGVLQATMTQQ 265 Query: 262 PDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 ++G V +A + G+ V + ++ L K Sbjct: 266 TQKMGRMAVASALDLKAGKAVPKEQLLETVLTTK 299 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 242 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 85/294 (28%), Positives = 152/294 (51%), Gaps = 4/294 (1%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV-- 60 M KL + + ++ A +TIA+ NP+F +++ GA+ A +G +V Sbjct: 1 MSKLKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHY 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + ++ ++L+ ++D+ V+ ++ P D A+ V+ N A IPV+ + ++ G Sbjct: 61 IPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDRSAGG 120 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 + ++ + +D+ G G Y+ K+ G V+ L+G+ G+ +R GF A+ K Sbjct: 121 KFLAFVGADDYSLGLETGRYLLKEMGGKGNVVILEGVKGSLTNVDRVRGFNDALKEFKDV 180 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239 +LASQPA++ R++GL VM+NL+ +HP + V A ND MA+GA+ AL A + VVG Sbjct: 181 KLLASQPANYQRLQGLQVMENLMQSHPQIDGVLAANDAMAIGAIEALDGANR-KAKVVGI 239 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +GT + A+ GKL A+ G G A + L+ E + + + +V Sbjct: 240 NGTKEAVDAIKSGKLLASGDYNGFLQGCIGTMVAIRALRKETIVNEVVLKPTVV 293 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 242 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 8/300 (2%) Query: 2 NMKKLATLVSAVALSATVS----ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 M L + + S + + T+NNPFF + + +K + G Sbjct: 12 KMMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGD 71 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 L+ LD + K+ + DL + + +NP D+ + +K A +A IPVI +D Sbjct: 72 VLITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPI 131 Query: 118 -TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 + V IAS+N G + + K + AK+I L+ A +A ER +GF +A+ Sbjct: 132 YDESLVNCSIASNNYDAGVLCAKDMMSK-RDHAKIILLEH-ATAKSAVERIQGFLDTIAS 189 Query: 177 H-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 + + V+ D + M+ +L PDV V A ND ALGAL A+++ +V+ Sbjct: 190 NANYQVINRADCDGQIEIAMPTMKQMLKETPDVDVVMALNDRSALGALAAIESMEIDNVL 249 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V G DG+PD ++ +N G + AT AQ P ++G + A +L+ +K++ K V ++L+ + Sbjct: 250 VYGVDGSPDVKELINTGLIQATAAQSPVKMGQLAYQKAKALLENKKIEKKIEVPVELISR 309 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 242 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 138/320 (43%), Gaps = 27/320 (8%) Query: 3 MKKLATLVSAVALSATVSANAMAKDT----------IALVVSTLNNPFFVSLKDGAQKEA 52 K + L L+ A+DT + + + + + ++ Sbjct: 9 RKVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKETL 68 Query: 53 -DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVI 111 + GY L+ +++ ++ ++ + ++ +P D ++ A +A IPVI Sbjct: 69 TKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIPVI 128 Query: 112 TLDRQA---TKGEVVSHIASDNVLGGKIAGDYIAKKAGE------GAKVIELQGIAGTSA 162 +DR+ + + + SD V G+ AG ++ ++ LQG AGT+A Sbjct: 129 LMDRKINVKDESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGTTA 188 Query: 163 ARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 R +GF++ A H +N+L ADF KG M+ LL +P++ + +QND+M G Sbjct: 189 MFGRTQGFEEIAAKHENWNILEQTNADFTTAKGEEEMRRLLNTYPEIDVLVSQNDDMTFG 248 Query: 222 ALRALQTAGK-----SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKV 276 AL A+Q+AG+ D+ V+ FDGT + V G + + P G E + Sbjct: 249 ALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVECNPY-QGKYIEEIIQAL 307 Query: 277 LKGEKVQAKYPVDLKLVVKQ 296 G+ ++ V+ K+ ++ Sbjct: 308 ETGQSIEKDNYVEEKVFTQK 327 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 139/276 (50%), Gaps = 8/276 (2%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 TI + + + F+ S++ +++A + G+ L V D+ + K+L VQD + Sbjct: 56 GEAKTIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKKV 115 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 ++I PT+S + +++A +A IPV T+D A+ G+ V+H+A+DN GG++A +Y+ Sbjct: 116 DAIVIAPTNSAGSKSMIELAEKAGIPVFTMDI-ASDGKPVTHVATDNKKGGQLAAEYVVN 174 Query: 144 KA--GEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQ 199 + V + + +R GF + + V+ Q D+ K +VMQ Sbjct: 175 NILTEKKGNVAVITYSE-IESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAADVMQ 233 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND-GKLAATI 258 N+L + ++ VF D A+GAL ++ A + ++G+DG P+G + G A + Sbjct: 234 NMLLKNDNIDVVFCVGDPAAIGALSSITAANAA-TKIIGYDGNPEGVAEIKKGGNWVADV 292 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 AQ P IG +E K L+GEKV ++ + ++ Sbjct: 293 AQDPAGIGKTTLEAIKKHLEGEKVDSEILIAPYIID 328 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 6/293 (2%) Query: 7 ATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN 66 ++ + S + + +K TI + T+NNP+F + + + + G L DS Sbjct: 27 IVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSGM 86 Query: 67 NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA-TKGEVVSH 125 + + V+ +LIN D +G++++ A +A IPVI +D + V Sbjct: 87 DAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNRSFVDGT 146 Query: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNV--LA 183 + S+N G+ + K+ + K++ L + +A +R +GF++ + + + Sbjct: 147 VVSNNYQAGEQCAKDLMKR-RKKGKILFLV-QSENKSAIDRIKGFKETLEKAGWKYENVG 204 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGT 242 +++ +L D+ V A ND A+GA+ AL SDV+V G DG+ Sbjct: 205 ELECQGQLELSQPLVEKVLNKTKDIDVVMALNDPSAMGAMAALDAEHMLSDVLVYGADGS 264 Query: 243 PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P+ + + + K+AAT AQ P G K VE K+L G+K + + V + L+ K Sbjct: 265 PEAKTMIYENKMAATSAQSPRTTGKKTVEMLYKILDGKKTEKQCIVPVSLITK 317 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 133/286 (46%), Gaps = 8/286 (2%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 AT S A I +VV L +P + D +K AD+ G L + DS+ + EL V+ Sbjct: 30 ATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKKDVGSELNQVE 89 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE---VVSHIASDNVLG 133 DL R +++ P D DA NA K ANIP+ L + +G S+I D+ + Sbjct: 90 DLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYKSYIGVDDTVA 149 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIK 193 G++ +Y+ K G ++ G+ G S R GF + + F ++A A R Sbjct: 150 GQMQAEYLNKLMPNGGNLVFAAGVYGASWTDRRKNGFDKTINE-NFKIVAEFQAKGSRDD 208 Query: 194 GLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGKSD--VMVVGFDGTPDGEKAV 249 M++ L P + AV A NDEMA+GA A+ AG++ VVG DGT + + Sbjct: 209 AKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAGRTAEFKAVVGVDGTEPALQDI 268 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G ++AT+ Q G K VE L G V +Y + L+ K Sbjct: 269 EGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYTLPFTLITK 314 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MNMKKLATLVSAVALS---ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 M MK L++A+A+ A+A K ++++V+ +NP++ + A++ A+KLGY Sbjct: 1 MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGY 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 V + + E + + ++++P ++D AV+ A +A IPV ++ + Sbjct: 61 EADVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEI 120 Query: 118 T-KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 +G + + S+N G + K G+ A+ +EL+G + A R G++ ++ Sbjct: 121 NQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKGAPSDNNAATRSNGYETVLSQ 180 Query: 177 HK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDV 234 + + S A++DR +G N Q++L A+PD+ V + NDEMALGA+ AL+ AGK DV Sbjct: 181 YPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV 240 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL-KGEK-VQ-AKYPVDLK 291 +V GFDG+PD +AV G++ T+ Q V ADK + GE V K D Sbjct: 241 VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEKQLFDCF 300 Query: 292 LVV 294 L+ Sbjct: 301 LIT 303 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 77/301 (25%), Positives = 139/301 (46%), Gaps = 8/301 (2%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKE-ADKLGYNLV 60 NM++L + + + V A IA++V T N+ ++ +++ GA A Y + Sbjct: 22 NMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMT 81 Query: 61 VLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 ++ A ++ V D + +++ P+D DA+ +++ A +A+IPV+ +D + Sbjct: 82 FQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMIS 141 Query: 119 KG---EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 S +A+DN G+ G + G+ KV + + G + R GF++ +A Sbjct: 142 DSGAKYYQSFLATDNEAAGEALGKEMVDHVGQTGKVAIMSYVPGVGSEIGRVGGFRKYIA 201 Query: 176 AHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SD 233 H ++ + +N ++L ++PD++ +FA N+ A+G RA+Q AGK Sbjct: 202 EHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFAANEMTAVGVGRAIQQAGKSGK 261 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 + + FDG D + V G Q +GAKGVETA VL G K + V Sbjct: 262 LYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTGAKPTKYVNTGVVFV 321 Query: 294 V 294 Sbjct: 322 T 322 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 13/301 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK+ + + L+ TVS AK T+ + + + + + + EA+K G +L + Sbjct: 1 MKRSLLVAAFALLACTVS---QAKLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFV 57 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA--TKG 120 D+Q+N ++ ++ +++ P ++ A A IPVI +DR+ Sbjct: 58 DAQSNVDNQMKALRSFIADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKIVADPS 117 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--- 177 + I SD G++A ++I A + K++ELQG G+SAA ER F +A H Sbjct: 118 LYATFIGSDFFKEGQMAAEWILAHADQKRKIVELQGEPGSSAANERQRAFASTMATHTSD 177 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGKS---D 233 F ++A + A+F R +G M LLT H D++ VFA ND+MALGA+ A++ G+S D Sbjct: 178 GFRIVARKVANFRRDQGRQAMAELLTTHGSDIEIVFAHNDDMALGAIEAIEAVGRSPGRD 237 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 +MVV D +AV GKL T+ P G K +E ++ G V + ++ Sbjct: 238 IMVVSIDAIKTAVEAVASGKLNCTVECNP-LFGPKVIEAVVRLTSGGTVMKETFNKDIVI 296 Query: 294 V 294 Sbjct: 297 D 297 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 9/301 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVV 61 MKK + L T A I +++ + + L+D + +K + + Sbjct: 1 MKKTLLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKL 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 DS ++P ++ VQ+ + LL+ PTD V +A +A IP+I ++R+ Sbjct: 61 ADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEH 120 Query: 122 ---VVSHIASDNVLGGKIAGDYIAKKA-GEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 V S + SD + GG+I G++I G+ A+ + L G G A +R +G ++ A H Sbjct: 121 MQYVTSFVGSDEIEGGRIQGNFIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQH 180 Query: 178 -KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DV 234 V++ Q ++R +GL + +N+L + + + + NDEMA+GA+ A + G D+ Sbjct: 181 KNIKVVSKQEGRWERDRGLAIAENVLAGNKGINVIVSNNDEMAIGAILATRKLGIKDEDI 240 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +VG D TPD + + G L AT+ Q G G E A KGEKV + V +LV Sbjct: 241 TIVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKGEKVPSVKWVPFELVT 299 Query: 295 K 295 Sbjct: 300 P 300 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 8/285 (2%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYN-----LVVLDSQNNPAKEL 72 + +AL ++ N + ++ EA+KL + +S ++ K++ Sbjct: 40 AAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDINKQI 99 Query: 73 ANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVL 132 +++QDL + ++I A+ AV+ A +A I V++ D E V+ + D Sbjct: 100 SDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDEQVATVGIDQTE 159 Query: 133 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 G++ D++ KK K++ L GIAGT+ R G ++ + +L S A +D Sbjct: 160 FGRVCADWLVKKLDGKGKIVVLNGIAGTANDTMRWNGAEEVFKQYPDIEILGSANASWDY 219 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV-- 249 +G M+++L+A+P++ V++Q M GA+ A AG+ V + + Sbjct: 220 AQGKAAMESMLSAYPEIDGVWSQGGAMTQGAIDAFIAAGRKLVPMTSEGNNGALRAWIEN 279 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 D L+ P GA+ + T K L GE+V + +D+ +V Sbjct: 280 RDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVTLDIPVVT 324 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 9/283 (3%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 K I ST + + V+ + K A+ GY L++ ++ +N K++ +V+DL + Sbjct: 63 GGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDVEDLIAQ 122 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG----EVVSHIASDNVLGGKIA 137 +++I P D++AV A + A IPVI +D Q G + ++ I SD G+ Sbjct: 123 KCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIRSDQYQQGQGC 182 Query: 138 GDYIAKKAGEGA-KVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 196 ++ G+ V+E+ G G S A+ R GF + VA H + Q ++ R Sbjct: 183 AEWTVGHVGDKDTTVLEITGNPGQSDAQNRSRGFNEYVADHSNIKVIQQNGEWSRATAQE 242 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGK 253 V+QN+ + ++ +DEMALGAL L+ AG DV +V DG + A+ + Sbjct: 243 VVQNVAQSGQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVDGQKEALDAIKADE 302 Query: 254 LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + A I P G + +K G++++ +Y V + + Sbjct: 303 IGAIITCTPKG-GDVLFDCINKYFAGDELEEEYFVHQSTITTE 344 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 81/317 (25%), Positives = 154/317 (48%), Gaps = 25/317 (7%) Query: 3 MKKLATLVSAVAL---------------SATVSANAMAKDTIALVVSTLNNPFFVSLKDG 47 MKK+ L + + L + + AK I +++ +FV++++G Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPVG-YFVAVREG 59 Query: 48 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAN 107 K A + + D+ + +K+L+ V+DL + ++ I DS+A AV+MAN+AN Sbjct: 60 IDKAAAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEAN 119 Query: 108 IPVITLDRQATKGE------VVSHIASDNVLGGKIAGDYIAKKAGEG-AKVIELQGIAGT 160 IP++ E +++++ + V GK+ G+ GE KV+ ++G GT Sbjct: 120 IPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVVLIEGRPGT 179 Query: 161 SAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMA 219 S R +G +A+ + F V+ +Q +++++ + L ++++L+ + + + AQ+D A Sbjct: 180 SPQINRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQTIDVIIAQDDNSA 239 Query: 220 LGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 278 +GA AL+ A K ++V+G G+ +G AV G + T + G + A K L Sbjct: 240 IGAGMALKEANLKDKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAITAAVKYLN 299 Query: 279 GEKVQAKYPVDLKLVVK 295 GEKV+ + V K Sbjct: 300 GEKVEPVTQMKQVEVNK 316 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 138/277 (49%), Gaps = 11/277 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD--SQNNPAKELANVQDLTVRGTKI 85 IA+V NP++ +L+DGA E K G + V S+ + E A + L +G Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGKIAG 138 + P ++ V + Q IP++ LD Q S I SDN+ G+ AG Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVM 198 + + K G +V LQGIAG R +GF + VA K +++A+QPAD+D+ KG V Sbjct: 141 EGLLKLMGGKGEVAILQGIAGEQNGINRQKGFTEKVAG-KLDIVATQPADYDQAKGQTVT 199 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAAT 257 + +L AHP + +FA ND M LGA +A++ AG V ++ DG +AV G L+ T Sbjct: 200 EAILKAHPKITGIFAANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAVKAGTLSGT 259 Query: 258 IAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 I+Q P G V+ ++ +KV ++ + L+ Sbjct: 260 ISQYPYAEGQLAVQACIDLVAKKKVPSRIVAPIALID 296 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 5/299 (1%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK + + L+ S+ + +V + F+ ++K G + A +LG + Sbjct: 42 MKTRHFIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSYV 101 Query: 63 DSQNN--PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + A+++ V++ + LL+ D++A+ V+ AN I V+T D Sbjct: 102 GPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINSD 161 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HK 178 VS +A++N G A D +A + KV + +AGTS+A ER EGF + + Sbjct: 162 IPVSFVATNNRKAGAQAADALASQVNNKGKVGIIAHVAGTSSAIERSEGFMERMKEKYPD 221 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVV 237 VL Q +D D K ++ +++ A+PD+ ++ N+ LG A+ + K V V+ Sbjct: 222 IKVLPVQYSDGDPQKAMDKTIDMIQANPDLAGIYGTNEGSTLGVANAIDSQNLKGKVKVI 281 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 GFD T + +G + + Q QIG +G++T + L G+ V+ + + +K V + Sbjct: 282 GFDSTEAIINFLKNGVIQGFVVQDAYQIGYQGIKTLNAALSGQAVEKEIDIPVKFVNAE 340 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 18/310 (5%) Query: 1 MNMKKLATLVSAVALSATVSANAM---------AKDTIALVVSTLNNPFFVSLKDGAQKE 51 M K L + A + + IA+V + F+VS+ GA Sbjct: 1 MKKSKYIALAAVAAFTVAPLSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDA 60 Query: 52 ADKLGYNLVVLDSQNN--PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 109 A K G + N+ K+ VQ+ + + I P D A+ AV+ A A+IP Sbjct: 61 AAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIP 120 Query: 110 VITLDR--QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG 167 + D + + S + + N GK+A + + K + + + ER Sbjct: 121 LFAFDTAFETNADAITSTVKTSNREVGKVAAENLIALLNGKGKYAVIAHSQTDATSTERR 180 Query: 168 EGFQQAVAAH--KFNVLAS-QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 224 +GF + + ++ Q ++ D+ K ++ +L A+PD+ A+FA N+ +GA Sbjct: 181 DGFLDYMKKNAPDMEMVGEVQYSNADQAKAQDIASAILQANPDLDAIFATNEATVVGAAT 240 Query: 225 ALQTAGKS--DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 +++A KS V++VG D ++ + DG ++ +++Q P QIG K +E A K L GEK+ Sbjct: 241 PVESALKSGHKVLLVGVDSGKAQQQYIRDGVISGSVSQNPYQIGYKTIENAVKSLNGEKI 300 Query: 283 QAKYPVDLKL 292 Sbjct: 301 DKVIDSGCFW 310 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 134/300 (44%), Gaps = 8/300 (2%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLN-NPFFVSLKDGAQKEADKL-GYNLV 60 M+K + + + I + + + + + + + K + Sbjct: 1 MQKKLAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEGI 60 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK- 119 VLD+ N A+++A VQDL + +++ PT+ A+ V+ A Q IPVI + ++ Sbjct: 61 VLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISEK 120 Query: 120 --GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA- 176 + + + + G+ A + + + +V+++ G G A R +GF+ ++AA Sbjct: 121 GQEFITAFSGPNTITQGQYAAELMCEGLNGKGQVVQITGQPGYQTAINRQKGFEDSLAAD 180 Query: 177 -HKFNVLASQPADFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGKSDV 234 +++ SQP D++R K VM+N +T + V+A +D M +GAL A++ A ++ Sbjct: 181 CPGVSIIDSQPGDWNREKSQRVMENFITRFGTKIDGVYAADDNMGIGALNAIKEADLKNI 240 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +VG G A+ +G ++ Q P + K+L G+KV+ D V Sbjct: 241 KIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILNGDKVEKDNYFDTPKVT 300 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 164/306 (53%), Gaps = 16/306 (5%) Query: 3 MKKLATLVSAVALSATVSA--------NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADK 54 M+K+ L++ +A++ + A A TI + + + P FV L++ + EA Sbjct: 1 MRKVTYLMTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKT 60 Query: 55 LG-YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 LG ++ D Q + K++A+++ V+G ++I P D+ A+ ++ A + I V+T+ Sbjct: 61 LGNVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTI 120 Query: 114 DRQATK-GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 DR EV++++A+DN++G + G+ + K +GA +I LQGI G A +R +G Sbjct: 121 DRPVNGVPEVIANVAADNLIGAQRQGEAVEKLFPQGATIINLQGIPGDKTANDRSKGVHD 180 Query: 173 AVAAHK--FNVLASQPADFDRIKGLNVMQNLLT--AHPDVQAVFAQNDEMALGALRALQT 228 + H + +A Q A F+R +GL+V +NLLT A+P + A ND+ ALGA +A++ Sbjct: 181 TLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANP-PTVIVAGNDDSALGAAQAVEA 239 Query: 229 AG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 G K + + G+DG+ D KAV DG L T+ Q P + G + V+ ++ A Sbjct: 240 RGLKGKIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIRTGARPATVD 299 Query: 288 VDLKLV 293 V + V Sbjct: 300 VLVSPV 305 >UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Bacillaceae RepID=A4IT20_GEOTN Length = 337 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 3/281 (1%) Query: 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QNNPAKELANVQD 77 A A LV L+N ++ ++ GA+ A +L +L + Q N + L ++ Sbjct: 42 TLAKAKDTYHFVLVPEELDNDYWRLVEKGAKAAARELDVDLEYIGPRQANIDEHLRILKK 101 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 ++ + NIPV+T+D A V +I +DN G IA Sbjct: 102 AAAAKVDGIITQGLTEAEFVPVINEIVDKNIPVLTIDTDAPTSWRVGYIGTDNYYAGFIA 161 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLN 196 G + + V + G ++R GF+ AV K ++A + + R++ Sbjct: 162 GRALVEDTQGMVNVAIITGSLTAVHQQQRVRGFRDAVKNEKRIRIVAVEESHITRVQAAE 221 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLA 255 +L HP+V A + + A+G R ++ + + ++GFD P+ + + G + Sbjct: 222 KTYTILKKHPEVNAFYGTSALDAIGIARVVEQFHREQETYIIGFDTLPETIEYLQKGTIE 281 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 AT+ Q P ++G + V+ ++ G V A + K++ K+ Sbjct: 282 ATVVQEPYEMGYRAVKMMADIVAGHDVPAITNTETKVIRKE 322 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 143/309 (46%), Gaps = 22/309 (7%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSL----KDGAQKEADKLGYN 58 MKK+ + + + AK + + + ++ + + + ++ A+ Sbjct: 1 MKKVLIFLLLIVTILSF-----AKFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDVE 55 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 ++ ++ P++++A VQ L +G L+INP +S + A + I I +DR Sbjct: 56 FYLVTAKE-PSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGIN 114 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 E +IA DN + G +AG YIA+K G V+ ++GI T ER E F++A+ + Sbjct: 115 SEEYNVYIAGDNYMYGYLAGKYIAEKLGGKGNVVVIEGIPSTINT-ERVEAFKKALEPYP 173 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMV 236 ++A QP + R K +MQ LLT P++ AV+ +D+M G L AL+ AG+ +++ Sbjct: 174 NVKIIAQQPGYWSREKAFEIMQTLLTKFPNIDAVWTGDDDMLHGVLLALKQAGRDKNIVL 233 Query: 237 VGFDGTPDGEKAVNDG-KLAATIAQLPDQIGAKGVETADKVLKGEK--------VQAKYP 287 VG + K + DG L P + + + A LKGE + K Sbjct: 234 VGGACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGEHLNGFYQRGIPRKII 293 Query: 288 VDLKLVVKQ 296 + + V K+ Sbjct: 294 LSTETVTKE 302 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 239 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 146/277 (52%), Gaps = 10/277 (3%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL----DSQNNPAKELANVQDLTVRGTK 84 +A+V + F+ +++ GA A + + V + + ++ +Q+ +G Sbjct: 45 LAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQGVD 104 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAK 143 L+ TD+ + + + A I V+ +D E V A+DNV + A +Y+ + Sbjct: 105 GLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPVFATDNVAAAERATEYLVE 164 Query: 144 KAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNL 201 + G +G KV + GT+ R EGF+ + + ++A Q ++ + + L V +++ Sbjct: 165 QLGEDGGKVAFIPFQPGTATNDTRTEGFKNVLKENPQVKLVAEQSSESNYNRALQVTEDI 224 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 LTAHPD+ A++A N+ LGA A+++AGK ++++VG+D PD KAV +G ++A IAQ Sbjct: 225 LTAHPDLDAIYAANEPGVLGAAEAVRSAGKAGEIIIVGWDTAPDELKAVREGVVSALIAQ 284 Query: 261 LPDQIGAKGVETADKVLK-GEKVQAKYPVDLKLVVKQ 296 P ++G GV A K+++ GE+V+ LV ++ Sbjct: 285 NPFRMGYDGVNAAVKMIRTGEQVEGG-DTGAILVTRE 320 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 81/290 (27%), Positives = 146/290 (50%), Gaps = 15/290 (5%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS----QNNPAKELANVQ 76 A K +ALV+ +L N FF+++++GA++ ++ + + + A ++ V+ Sbjct: 30 AETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRIVE 89 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV------VSHIASDN 130 + V +++ P DS A+ VK A A I V+ +D + + V + DN Sbjct: 90 QMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDN 149 Query: 131 VLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFD 190 G ++ GDY+AK+ G V ++G+ T+ A++R GFQ A+ A V++ Q +++ Sbjct: 150 RKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAGAKVVSVQSGEWE 209 Query: 191 RIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAV 249 KG V +L +P+++A+ ND MA+GA+ A++ AG+ V VVG+D + + Sbjct: 210 IDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINAIKPML 269 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVL----KGEKVQAKYPVDLKLVVK 295 DG++ AT Q + G++TA K L K + + LV K Sbjct: 270 KDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 319 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 4/283 (1%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELA 73 +A A A+ IA++ +L ++ ++ GAQ GY + + + ++ Sbjct: 52 AAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVK 111 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 V+D RG ++I+P + D + ++ A A IPVI +D + S +++++ Sbjct: 112 LVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPRSTVSTNDEAA 171 Query: 134 GKIAGDYIAKKAGE-GAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDR 191 GK A + + + AG+ G + + G R +GF + + + ++ + DR Sbjct: 172 GKFAAEKLKELAGDAGGTFAIVSAVPGAVQEGGREKGFSDELGTYPNYKIIGTYYGKGDR 231 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND 251 + N+ Q++LT++PD+ + N+ + G ++ + + V FD + + A+ D Sbjct: 232 NQTYNITQDILTSNPDITGFYTVNEGSSAGVTLGVREGDLKEKIFVAFDPSTEVLDAIRD 291 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G + +AQ P IG V A KVL GE V+ K V + V Sbjct: 292 GYVDGAVAQNPYLIGRTAVLNAIKVLNGETVEKKIDVPVTWVT 334 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 6/298 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M K++ ++ +A + + AMA+ TIA + + N + + GA+K K G + Sbjct: 1 MITKRMLGRLTIAMATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFI 60 Query: 61 VLDSQ-NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 L ++ +K+LA V+D+ R + I P DS + A+ A A I V+ +D + Sbjct: 61 ELAAEKGELSKQLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISG 120 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV--AAH 177 ++ S++A+DN+ + GD+ A++ +G VI + G G S +ER +GF + Sbjct: 121 AKITSYVATDNIKAAMVQGDWTAEQIKDGDTVIYVTGDQGQSTGQERKKGFLDGLNAKRK 180 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DVM 235 V+ +D+ N ++ L A+P + + D ALGA AL AGK DV Sbjct: 181 NVKVVEVATT-WDQTMAQNGVETALRANPTAKVIACAWDGGALGAKAALMAAGKKAGDVK 239 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293 + GFDG+P G + G +A AQ+ +IG GVETA +G+KV+A+ LV Sbjct: 240 IAGFDGSPGGLDMMKQGWQSANAAQMLAKIGQVGVETAIAAAEGKKVEARIDTGSFLV 297 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 125/299 (41%), Gaps = 14/299 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61 M K L + + L+ + + + TI + + + + + A L Sbjct: 1 MTKYYWLAALLTLTLSSCSQGGKRYTIGVSQCSEDI-WREKQNAELRMGAYFHDNVELKF 59 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 + ++ +++ + L G +L++ P + + A+ A IPVI +R+ + Sbjct: 60 AAAYDSDERQVQQIDSLMNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGSQK 119 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA-AHKFN 180 + I++DN G + G+YI + V+E++G+AG+S A ER GF A+ Sbjct: 120 YTAFISADNYEMGHVMGEYIVSRLHGKGNVLEIKGLAGSSPAIERHNGFMDAIKDEPGIK 179 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 V+ S D+ + L A+ V VF ND A+GA AL + G Sbjct: 180 VVGSLQGDWTEATACQKSKEWLAANEGVPVDLVFGANDRTAMGAREALGE----KPLYCG 235 Query: 239 FDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 DG P G + V D L A+ G + ++ A ++L+G+ + + + LV Sbjct: 236 IDGLPGKNGGIQLVRDSLLDASFIYPTH--GDQLMDLAIRILEGQPYEKETMLMSALVT 292 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 10/251 (3%) Query: 29 IALVVS-TLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + S + +NPF + D +A LG L+ ++ + + + ++D+ +G K+L+ Sbjct: 84 VGFSQSESTSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLI 143 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATK---GEVVSHIASDNVLGGKIAGDYIAKK 144 + P +SD +G A+ A IPV+T+DR T + ++ I S+ +IA D +A Sbjct: 144 VAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTACSDFIAFIGSNFYGQAQIAADDLATA 203 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLL 202 G AKV L G G + +R GFQ V A V+ASQ FD+ G +VM +L Sbjct: 204 TGSQAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKFDQTDGQSVMAQML 263 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIA 259 A+P + AV+A+NDEMALGA++A+ AGK D+ +V DGT + V G + A + Sbjct: 264 QANPGITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQQAVQDVAAGTIYADVE 323 Query: 260 QLPDQIGAKGV 270 P G Sbjct: 324 TNPR-FGPLAF 333 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 12/304 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG---Y 57 MN++ + +A A S A ++ + V L NPFFV++ GA+ A K+G Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + + S+ + ++ +++ ++L+N +D + +K A A I + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI--AVVAVDV 118 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + SDN + G + ++A++ G V+ + G +A R G ++ + + Sbjct: 119 GAVGADATVMSDNAMAGAESCKFMAQQLGGRGNVVIVNGPP-VTAVSARVAGCKKVLGNY 177 Query: 178 K-FNVL-ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM 235 +L +Q A R G+ M NLLTAH + AVFA ND +GA A++ AG+SDV Sbjct: 178 PGIKLLSDNQDAHGSRDGGMETMANLLTAHKKIDAVFAINDPTGIGAELAVKQAGRSDVK 237 Query: 236 -VVGFDGTPDGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGE-KVQAKYPVDLK 291 + DG PD EKA+ D K A + AQ P + V+ +L G+ +++ + Sbjct: 238 LIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKRPAKSQVLLPTP 297 Query: 292 LVVK 295 V K Sbjct: 298 AVTK 301 >UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR03_9FIRM Length = 332 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 4/275 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 K ++NPF+ +LKD Q ++ G L++ D + ++ +Q+L Sbjct: 47 QEKKVFGFCGIDMSNPFYATLKDSVQSALEEQGDKLLIKDPAGDAERQNTQIQELIEEDV 106 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQA-TKGEVVSHIASDNVLGGKIAGDYIA 142 + + P D + A+ +A+IPVI LD + G+V + + SDN G + G+ + Sbjct: 107 DAVFLCPVDWKKIEPALDALEEADIPVINLDTKVYESGKVAAFVGSDNRNAGYVCGEDLV 166 Query: 143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLL 202 ++ +G +V+ ++ ++ ER GF++AV+ F V+ D + +L Sbjct: 167 ERKPDGGQVVIVE-NLNVNSVCERITGFEEAVSKGAFEVVKRIQTGNDVSGLKQQVAQVL 225 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND--GKLAATIAQ 260 +PD+ A+ +D+MA A+ AG+ V V DG+P +KA+ + G + AQ Sbjct: 226 AQNPDLDAIMCGDDQMAEQVREAITEAGQEKVYVYSVDGSPASKKALVEHTGGMMGIGAQ 285 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P +G K V+ A+ VL GE + + + + + Sbjct: 286 SPINLGKKAVKIANAVLNGEDYEKETYEETFFINR 320 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 5/276 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGT 83 ++ T NN F+ + D + + G LV D+ + K++ + + Sbjct: 41 GSRKKFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKV 100 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS-HIASDNVLGGKIAGDYIA 142 K + INP D + A+ A A IPVI +D ++V+ + SDN G Y+ Sbjct: 101 KAIFINPVDWKQIKPALIAAKNAGIPVIVVDTPVYDDKLVACTVISDNYDAGVQCAKYLM 160 Query: 143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNL 201 K A ++ ++ + +R +GF + A K + ++A+ ++ K ++++ +L Sbjct: 161 KS-KSKANIMLIEHSK-AKSGIDRIKGFVDTIGASKQYKIVAAGDSEGQLDKTMSLVDDL 218 Query: 202 LTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATIAQ 260 + H +V A+ A ND ALGAL AL+ G VMV G DG+P+ + ++DG + AT AQ Sbjct: 219 IKKHTNVDAIMALNDPSALGALAALKENGLLGKVMVFGVDGSPEAKTMIHDGFMTATSAQ 278 Query: 261 LPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 P++IG E A +LKG++++ V + L+ K+ Sbjct: 279 FPNKIGHIAAEKAYDILKGKRLKRDVIVPISLISKE 314 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 237 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 91/316 (28%), Positives = 151/316 (47%), Gaps = 24/316 (7%) Query: 3 MKKLATLVSAVALSATVSANAMA------------KDTIALVVSTLNNPFFVSLKDGAQK 50 MKKL + +A S+ + K + + V TL NPFFV L + A+ Sbjct: 1 MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60 Query: 51 EADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 EA+K GY +++L + K+ ++D + +++ P ++ A+G +K AN A IPV Sbjct: 61 EAEKHGYEVIILSGD-DAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEIPV 119 Query: 111 ITLDRQA--TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 168 T D +VV ++ +DN GGK+A + G KV+ L + R + Sbjct: 120 FTADTGCTDPGAKVVCNVMTDNFGGGKLAAQAMIDVLPNGGKVLILDFKK-AQSCLLRVD 178 Query: 169 GFQQAVAAHK-------FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 GF++ +A H ++A ++ L A PD++ VFA ND ALG Sbjct: 179 GFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKGVFAINDLSALG 238 Query: 222 ALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGE 280 A+ AL+ A K DV ++GFDG G++A+ G++ A Q P +IG V+ G+ Sbjct: 239 AVVALKKANKLQDVKIIGFDGLRIGKEAILRGEIHADPIQFPSEIGKLTVQQILAYKNGD 298 Query: 281 KVQAKYPVDLKLVVKQ 296 +V+ + + KL ++ Sbjct: 299 EVKPEILIATKLYYQE 314 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 237 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 9/288 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN-NPAKELAN 74 + K TIA+V L +PFF + G +++A +LG + Q +PA ++ Sbjct: 65 GPVPTVAPGTKITIAMVPK-LVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKI 123 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGG 134 ++DL + + I+P + +V + + I ++T D + + V +I +DN G Sbjct: 124 IEDLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQRVMYIGTDNKAAG 183 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKG 194 K G+ +AK KV + G G +R EGF++ V V+ Q D D KG Sbjct: 184 KTMGETMAKLLNGRGKVGIITGGLGALNLNQRIEGFKEGV-GPNIQVVDVQATDDDLQKG 242 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ----TAGKSDVMVVGFDGTPDGEKAVN 250 L+V + +L AHPD+ + + + L+ +++V FD + ++A+ Sbjct: 243 LSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQ 302 Query: 251 DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ--AKYPVDLKLVVKQ 296 +G +AAT+ Q P Q+G V+ A +L G+ + +V K+ Sbjct: 303 EGIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKE 350 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 141/318 (44%), Gaps = 22/318 (6%) Query: 1 MNMKKLATLVSAVALSATVSANAMAK-------------------DTIALVVSTLNNPFF 41 M KK+ + V++ A ++ + + VS N F Sbjct: 1 MMKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFM 60 Query: 42 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 101 V + + ++ + GY + ++D+ + K+++ ++ + +L+ P D + +K Sbjct: 61 VGMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLK 120 Query: 102 MANQANIPVITL-DRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGT 160 A+ A IPV + + + V S I D GG++ + + K GE AK+ + G G Sbjct: 121 EAHDAGIPVFVIHNNVSATDLVTSLIHVDVRQGGELKMEQVIKDCGEDAKIAIMTGTLGQ 180 Query: 161 SAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMA 219 + G+ + + V+ ++ + +N L + ++ A+ ND MA Sbjct: 181 DTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLASGKEIDAIVCNNDGMA 240 Query: 220 LGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 278 LG + L++AGKS+ + V G D T +G KAV+ G++AATI K E + + Sbjct: 241 LGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGEMAATIYVDSKAEIEKAFEMLEDLKA 300 Query: 279 GEKVQAKYPVDLKLVVKQ 296 G+KV A+Y V LV K+ Sbjct: 301 GKKVDAEYKVPSVLVTKE 318 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQ---KEADKLGYNLVVLDS----QNNPAKELA 73 + + + A V N + + +G + ++A G L V + +++ +L+ Sbjct: 86 TKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEGQLS 145 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 ++D +G +L++P ++ A++A+IPV ++ + + + +++ Sbjct: 146 ILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGAD--MFVGPNSLEQ 203 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK--FNVLASQPADFDR 191 G++A +++ +K G V + G+A T+ R R +GF++ A + V+A Q AD+DR Sbjct: 204 GQLAAEWVNEKLGGSGDVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQVVAKQNADWDR 263 Query: 192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKA 248 + +V L +PD++A+F ND MALG + A++ A D+ V+G DG + + Sbjct: 264 SQAKDVAATFLKTYPDLKAIFCNNDVMALGVIEAVKEADLTLNKDIYVIGCDGQSEAYDS 323 Query: 249 VNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + ++AATI P G E + L G+ V K++ Sbjct: 324 IRANEMAATIDTFPYYEGYMAAEVCYRSLIGQTVPRVVFTPSKMLD 369 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 137/307 (44%), Gaps = 12/307 (3%) Query: 2 NMKKLATLVSAVALSATVSAN-----AMAKDTIALV----VSTLNNPFFVSLKDGAQKEA 52 + K++ T+ +A + + A A +L+ + N F+ S+ G + A Sbjct: 4 HKKEIITVAILMAAAVVIFAGILKPEATQTKKCSLIYIPKIRDNTNDFWTSVISGCKMAA 63 Query: 53 DKLGYNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPV 110 ++ +L +L + N ++ ++ + +L +P+ D+ +K A + I + Sbjct: 64 EEYESDLEILAPDKEENIEEQNKLLKKAIEQKPDAILFSPSSMDSSDELLKEAKEKGIRI 123 Query: 111 ITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGF 170 +D + +A+DNV G++ G+Y K + +K+ + + G S A ER +GF Sbjct: 124 TYIDSYTKEKLQDLTVATDNVNAGRMLGEYARKLIDKDSKIAIVSHVKGVSTAVEREQGF 183 Query: 171 QQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 ++ + + N++ + K + Q L+ +PD++ + N+ A+G RA+ AG Sbjct: 184 REGLGDYADNIVDIVYCNSLYEKSYELAQELMRKYPDLELIAGMNEYSAVGVGRAVSDAG 243 Query: 231 -KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 K + VVG D + + + G I Q ++G GVE +L G+ V+ Sbjct: 244 AKDKIAVVGVDCSQEAINLMEMGVYKGIIVQKAFRMGYIGVEETIHMLNGDAVEKNIDSG 303 Query: 290 LKLVVKQ 296 +LV + Sbjct: 304 CELVTPE 310 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 125/272 (45%), Gaps = 2/272 (0%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QNNPAKELANVQDLTVRGTKI 85 + L+ +NP++ ++ GA++ N+ + + + +++ ++ Sbjct: 53 PHVILISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPLRTSVDEQVKLLEKAIASRVDG 112 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++ +A + A NIPVIT+D A K ++++ ++N G++ G + + Sbjct: 113 IIVQNLKDEAFIPLIDKAISRNIPVITIDADAPKSRRIAYVGTNNFEAGQLLGKAVVSRV 172 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA 204 ++ + G + R R +GF +A H V++ ++ RI+ + +L Sbjct: 173 EGERELGVMIGTDTSENQRLRLQGFLSVIAEHPRLKVVSVASSNISRIQASIQAEQMLRK 232 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQ 264 HP + + + A+G A + + D+ + GFD + +A+ G + AT+ Q P Sbjct: 233 HPHISVMVGTSALDAIGIRMATKNLHRQDIQIFGFDDVEETIEAIQQGDIVATVVQKPYD 292 Query: 265 IGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 +G V+ + L G+++Q ++ ++++ +Q Sbjct: 293 MGYSAVKLMVEHLSGKQIQKEHFTAIEVIDRQ 324 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 134/271 (49%), Gaps = 7/271 (2%) Query: 29 IALVVSTLNNPFFVSLKDGAQKEADKLGYNL--VVLDSQNNPAKELANVQDLTVRGTKIL 86 +++++ T +N F + + +K ++ + LDS+ + +++ V++ + GT+ + Sbjct: 69 VSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILNGTQAI 128 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG 146 + D+ V+ +A +P+I +R S + +D + G + + +K G Sbjct: 129 ICLAVDAKQSEPIVRACKEAGVPLIAFNRIFEN--CDSFVGADGAVAGSLLARFTGEKTG 186 Query: 147 EGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTA 204 V + GI G R + + + V+ D+ R K L +++ L + Sbjct: 187 GKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGDWKRDKALQLVETWLQS 246 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 D+ A+ ND+MA+G A++ AGK D++V G +G PDG AV DGK+AAT+ Q PD Sbjct: 247 GTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDGINAVRDGKIAATVFQNPD 306 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 + + +E A + + GEK ++K + +LV Sbjct: 307 RQAEEALEAALQYIHGEKPESKIMIPFELVT 337 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 4/285 (1%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANV 75 A T+ + TL+ P+FV + + A K G +V D+ + AK +NV Sbjct: 136 GAASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNV 195 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGK 135 +DL + ++I+ ++ + A P I +DR+ G S I DN G+ Sbjct: 196 EDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFRSGTYASWIGPDNEAIGR 255 Query: 136 IAGDYIAKKAGEGAKVIELQ-GIAGTSAARERGEGFQQAVAAHKFNVLA-SQPADFDRIK 193 G+++A K G+ A V ++ G A S R G ++A+ A ++ ++ Sbjct: 256 QDGEFLAAKLGKDATVALIKGGPADNSIGLARTTGVKKALDAAGIRMVEGPDYGNWASDG 315 Query: 194 GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVND- 251 GL VM++LL +H D+ AVF +ND M LGA RA++ AG+ ++++ G DG + +A+ Sbjct: 316 GLTVMESLLASHKDLDAVFCENDAMCLGAQRAVKDAGREKEIVLAGVDGQAEALQAIAAG 375 Query: 252 GKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G T DQIG+ G++ A +L G+K + VD V K+ Sbjct: 376 GNYLVTGLNDADQIGSLGLDRAVDILDGKKPEKDTVVDSPQVTKE 420 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 7/273 (2%) Query: 30 ALVVSTLNNPFFVSLKDGAQKEADKLGYN---LVVLDSQNNPAKELANVQDLTVRGTKIL 86 AL +S + N F +L QKEA++LGY + D +N+ A +++ ++ G + Sbjct: 2 ALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGI 61 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATK-GEVVSHIASDNVLGGKIAGDYIAKKA 145 +I P +D + AVK A + + V+ L+++ + + + +DN G + + Sbjct: 62 IIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNAADTFVGADNESTGAALMKKVMEDL 121 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA 204 ++EL G G+ R +GF +A + V+AS AD+D K L + +N LT+ Sbjct: 122 DGKGNIVELLGPMGSDGQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLTENWLTS 181 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 D+QAV AQND MA+GA +A++ AG +D + V G D T DG A+ +G + T++Q + Sbjct: 182 -SDIQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGGMTGTVSQGTE 240 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 G + ++ G+ V + + K+ Sbjct: 241 NQGKISADLCSNLIYGQSVPKEVIATNVVYTKE 273 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 81/300 (27%), Positives = 149/300 (49%), Gaps = 7/300 (2%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 ++ LA + +A + +SA + A T ALV FF + GAQ A G +LV+ Sbjct: 8 KLRLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVI 67 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 +S +NP + +++ +G K +L+ D + + AVK A ANIPVI +D G Sbjct: 68 FNSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP 127 Query: 122 VVSHIASDNVLGGKIAGDYIA----KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH 177 + + DN+ GG+I G Y K+ G A++ + G ++ +R +GF++ + ++ Sbjct: 128 QAAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIV-GALNSAIQNQRQKGFEETLKSN 186 Query: 178 K-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVM 235 + + K + +NL+T +PD+ A++A + LGA+ A++ G+ D+ Sbjct: 187 PKITIANVVDGQNVQDKAMTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIK 246 Query: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V G+D T ++ G + A + Q P+++GA+ + + + G+ V V +V K Sbjct: 247 VFGWDLTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTILVPATVVTK 306 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 10/280 (3%) Query: 25 AKDTIALVVS-TLNNPFFVSLKDGAQKEADKLGYN-LVVLDSQNNPAKELANVQDLTVRG 82 +K + S + NPF + A L+ ++ +N ++++A+V+++ +G Sbjct: 54 SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQG 113 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK---GEVVSHIASDNV-LGGKIAG 138 + L+I P DS + A A +IP++TLDR+ + +S + S+ G+I Sbjct: 114 AQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYLSFLGSNFYFKQGEIDA 173 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNV 197 +AK G A V E+QG G S R +GF + A+ ++ Q ++ V Sbjct: 174 RELAKATGGHAMVAEIQGAYGNSVEVARTKGFAAGLKAYPGMKIVTEQTGNWFTTDAQKV 233 Query: 198 MQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DVMVVGFDGTPDGEKAVNDGKLA 255 M +L AHP+V AV+AQ D MA GA+ AL+ AGK V +V DGT G + + DG + Sbjct: 234 MSQILLAHPNVNAVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTRQGVQDIVDGWIY 293 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 A P G G+ V + + Sbjct: 294 ADDETNPR-FGPIAFHELQNWFDGKPVPRHIVLTDHIYTP 332 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 131/279 (46%), Gaps = 6/279 (2%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 N+ I T NN F+ + + + + G L+ LDS + K+ + L + Sbjct: 39 NSTEPRKIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQ 98 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH-IASDNVLGGKIAGDY 140 ++I P D + + +++K A + IPVI +D + + +++ I SDN G Sbjct: 99 QVDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNKNITYSIVSDNYDAGVQCAKD 158 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQ 199 + +K + A ++ LQ T + R +GF+ + ++ + V+ D + M+ Sbjct: 159 MMRKL-DHANIVLLQHS-TTRSGYLRIKGFEDTIQSNENYKVVKRMECDGQLEVAMPKME 216 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVVGFDGTPDGEKAVNDGKLAATI 258 + + + V ND A+GA+ AL + D V G DGTP+ ++ V +GK+AAT+ Sbjct: 217 SFIEEGIEFDVVMCLNDPSAMGAMAALSSNNILKDKYVYGIDGTPEAKEMVVEGKMAATV 276 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPV-DLKLVVKQ 296 AQ P G K E K+ E ++ K + ++++ K+ Sbjct: 277 AQSPKTFGKKAGEVIYKLFSQETIKNKNEMSPVQIITKE 315 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 156/326 (47%), Gaps = 30/326 (9%) Query: 1 MNMKKLATLVSAVA---LSATVS---------------ANAMAKDTIALVV----STLNN 38 M + ++ L++ +A L+A S A A + + V TLNN Sbjct: 1 MKKRVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNN 60 Query: 39 PFFVSLKDGAQKEADKLGYNLVVLDSQN--NPAKELANVQDLTVRGTKILLINPTDSDAV 96 P+++S+ D AQ+ AD LG +L + Q + K+++ ++ + ++++ SD V Sbjct: 61 PWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGV 120 Query: 97 GNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQ 155 A+K A +A I ++ D + + V + + D+V G AG YI ++ G +V + Sbjct: 121 IPAIKKAREAGIKIVNFDTRISDTSVIDAFVGGDDVAGAYKAGKYICEQLGGEGEVAIIT 180 Query: 156 GIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 214 G+ S +R GF QA A + V+A Q A++ K +V N+LTA+P+V+A+FA Sbjct: 181 GLMEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTTNILTANPNVKAIFAC 240 Query: 215 NDEMALGALR--ALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVET 272 ND+MA+G + D+++VG+DG D DG L A ++ GA GV+ Sbjct: 241 NDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMTMDGDLDAFVSLPNLDEGAMGVKL 300 Query: 273 ADKVLKGEK--VQAKYPVDLKLVVKQ 296 A ++ + D LV + Sbjct: 301 ATALVMNSDYHYDREILYDCTLVTGE 326 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 10/290 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELA 73 + + + I +++S+ +N F+ ++K ++ A+ LG + V D++++ +L Sbjct: 79 ALGELPKSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLD 138 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-------KGEVVSHI 126 + + G ++++P D + + AN+A IPVI L G + I Sbjct: 139 ALNTMVTMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKI 198 Query: 127 ASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA-HKFNVLASQ 185 + G + + + +G KV L G+ G + R G + ++A+Q Sbjct: 199 TVNFEEQGSTVANDMISRMEDGGKVAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQ 258 Query: 186 PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDG 245 D+D K +++LTAHPD++ +FA ND MAL A++ALQ G DVMV G D T D Sbjct: 259 ACDWDTEKAYEATKDILTAHPDLKGIFACNDNMALAAVQALQEMGNKDVMVYGVDYTTDA 318 Query: 246 EKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + A+ DG + ++ E A +++G+ + + L LV + Sbjct: 319 KAAIEDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQ 368 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 123/283 (43%), Gaps = 8/283 (2%) Query: 11 SAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK 70 + S + + + + + + Q A++LG L + D+Q Sbjct: 31 AVAPSSLDLKTKTYPELVVGFAQIGAESEWRTANTRSIQDTANQLGVELALSDAQQQQEN 90 Query: 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR--QATKGEVVSHIAS 128 ++ ++ +G ++ ++P QA IP+I LDR I S Sbjct: 91 QIKAIRSFIAQGVDVIGVSPVVETGWDEVFAEVKQAGIPLILLDRNANVPDDLYSVRIGS 150 Query: 129 DNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPA 187 D V G+ A +A+ ++ L+G G++ RG GFQ+ + ++ +++ SQ Sbjct: 151 DFVEEGRRACGEMARLLDGQGAIVVLEGTQGSAPMIGRGTGFQECLQSYPALHIIDSQSG 210 Query: 188 DFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTP 243 DF R +G M LL H + + VFAQND+MALGA+ A++ G D+ +V D Sbjct: 211 DFIRARGKEEMAALLQKHGNSIDGVFAQNDDMALGAIEAIEEYGLRPGVDIKIVSIDAVR 270 Query: 244 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 +A+ DGKL ATI P +G TA + G V+ Sbjct: 271 AAFEAMIDGKLNATIECNP-LLGPLFFATALNLANGIPVEKWI 312 >UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_BACFN Length = 917 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 77/310 (24%), Positives = 139/310 (44%), Gaps = 22/310 (7%) Query: 3 MKKLATLVSAVALSATVS---------ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEAD 53 MK A L A +S K I T ++ + ++ Q EA Sbjct: 1 MKNTNLFRLAFLLFAGLSIFLSSCQPKEEGDKKYVIGFSQCT-SDSWREAVLLEMQIEAS 59 Query: 54 KL-GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 LVV ++ +N +++++ ++ L + +L+I+P ++ + + A + IP I Sbjct: 60 NYRNVELVVYNAMDNSSRQVSQIRKLISQNVDVLIISPNEAVPITDVAVEAYRKGIPTII 119 Query: 113 LDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 DR+ E I ++N G G+YI + +K++E+ G+ G+S A ER +GF Sbjct: 120 HDRKIQSDEYTVSIGANNYNIGSAIGEYINGQLPPNSKILEIWGLEGSSPAMERHDGFID 179 Query: 173 AVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT---- 228 + + K + + + + N L D+ V+A ND MAL A + Sbjct: 180 HLRSDKNFQVTQVFGKWHYNSAYDAV-NRLATFADIDLVYAHNDVMALAARDVIMKRDSV 238 Query: 229 AGKSDVMVVGFD---GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 +GK + +G D G G +AV D KL A+ Q P GA ++ A +++ GEKV+ Sbjct: 239 SGKR-IRFIGIDGVYGDGAGLQAVADEKLEASF-QYPTG-GAISIQVAMQIINGEKVKKN 295 Query: 286 YPVDLKLVVK 295 Y ++ ++ + Sbjct: 296 YVLNTAIINR 305 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 142/302 (47%), Gaps = 15/302 (4%) Query: 10 VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNP 68 + A+ A + A + +TI + + ++ F L+ G Q A ++G L + D+Q + Sbjct: 4 IFTAAVLAALMAGTASAETIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIEDAQADI 63 Query: 69 AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK----GEVVS 124 A++L V + ++I TD+ A A +A IP++ L+ + + + Sbjct: 64 ARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRLPKNQA 123 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAK-----VIELQGIAGTSAARERGEGFQQAVAA--- 176 ++ S G++ + + + K + L G A+R+R ++ +AA Sbjct: 124 YVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETLAAGEC 183 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDV 234 + + A + R ++V N +T + A+FA +DEMA+GA++AL+ AG K+DV Sbjct: 184 KGVTIADERSAAWMRTNAMDVTTNWITTGRPIDAIFANSDEMAIGAIQALKAAGVSKNDV 243 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +VVG + DG A+ DG L T+ Q A ++ A + +G+ V + V +LV Sbjct: 244 IVVGVNAAQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSVDRQVMVPFELVT 303 Query: 295 KQ 296 + Sbjct: 304 PE 305 >UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU6_PAESJ Length = 330 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 128/277 (46%), Gaps = 6/277 (2%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTK 84 + + L+ +NP++ ++ GA++ A + G L L ++ + + + ++ Sbjct: 47 QLHLVLISQEYDNPYWRLVQQGAREAAQQKGIELEYLGPARADVKEHIKILEMAIASKVD 106 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 ++ + + + A + IP+IT+D A + V+++ +DN G +AG + K Sbjct: 107 GIITQGLEENEFTPIINEAARMGIPIITVDSDAPHSKRVAYVGTDNYAAGYMAGRELIAK 166 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLT 203 + A+V + G S ++R GF+ AV + +++ ++ RI+ L Sbjct: 167 SAGRAEVALITGSFTASNQKDRVRGFKDAVKTYPGIHIIDIAESNISRIQSAASAYTLAQ 226 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAG----KSDVMVVGFDGTPDGEKAVNDGKLAATIA 259 +P++ + LG + L+ G K+ + ++ FD P+ +N G + +TI Sbjct: 227 KYPEIDTFVGTSALDGLGIAQMLKEMGSETLKTPIRIIAFDDLPETLTLINQGVIESTIV 286 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q P +G + V LKGEK+ Y D+K++ ++ Sbjct: 287 QQPFIMGRESVNLLMDYLKGEKIVTVYNTDVKVIHRE 323 >UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STD2_9RHIZ Length = 329 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 158/299 (52%), Gaps = 11/299 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 LA +A A VSA+A +A +V L+NPFF +++ G +++A G N+ V + Sbjct: 7 LALSAGLLATIAPVSAHAEDAAKVAAIVKGLDNPFFQTMQKGIEEQAKASGVNVSVQAAA 66 Query: 66 N--NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG--- 120 N + + + + ++ L+NP + A+ Q P++ +D Sbjct: 67 NMGDATGQADRLTAMAMQDFDCYLVNPISVSNLVQALVPVAQKKKPIVNIDSTIDAEQAK 126 Query: 121 ----EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 V ++I +DNV G +AG+ + K +G+KV + GI G + R +GF+QAV Sbjct: 127 AAGFAVSTYIGTDNVAAGALAGEEMLKLVPKGSKVALIAGIVGDVGSNARIKGFKQAVEG 186 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMV 236 K V+ AD+DR K L ++L AHPD+ FA ND MALG RA+QT+GK DV V Sbjct: 187 -KLEVVVMVSADWDREKALTAATDILAAHPDLAGFFAANDIMALGVERAVQTSGK-DVKV 244 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 +G DG D K++ G+L+AT+AQ P +GA G+E KG+++ A P + L+ K Sbjct: 245 IGLDGIVDALKSIAAGELSATVAQYPYVVGAMGLEACAVAAKGKELPANVPAPVLLINK 303 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 9/295 (3%) Query: 7 ATLVSAVALSATVSANAMA----KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 AT+V+ L + + + T+NNP+FV++ + ++ G L+ Sbjct: 4 ATIVACTTLFIAIGIHEKKDTRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITR 63 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-GE 121 D + K+ ++D+ G +L + P D + V A+++ + +IPV +D + + Sbjct: 64 DPLQDQKKQNEQIKDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEA 123 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FN 180 VVS I SDN G + KK A +I + ++ ER +GF+ + H + Sbjct: 124 VVSTIVSDNYDAGVQCAKDMMKK-KTSANIIIVN-QKALNSINERVKGFRDTIKGHPQYK 181 Query: 181 VLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGF 239 ++ + + + + VM+ ++ + V ND +ALG + A+Q K+D VMV G Sbjct: 182 IVEEKESAAEFEIAMKVMEKIIYEKKNYDVVMGGNDPIALGCIAAMQMTDKTDQVMVYGV 241 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 DG+PDG+ + G L T AQ P +IG K V+TA L GE V+ + ++L+ Sbjct: 242 DGSPDGKAMIKAGFLEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVTIPVELIT 296 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 127/319 (39%), Gaps = 26/319 (8%) Query: 3 MKKLATLVSAVALSATVSANAM---------------------AKDTIALVVSTLNNPFF 41 MKK L+ ++ + + K I ++ + F+ Sbjct: 1 MKKFTALLVVALMTVVMLSACGSNNSDGSSKSGTDNGGTKASGDKIYIPIISKGFQHQFW 60 Query: 42 VSLKDGAQKEADKLGYNLVVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNA 99 ++K GA+K A + + + K++ +Q + + DS A Sbjct: 61 QAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASVPL 120 Query: 100 VKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAG 159 ++ A A IPVI D ++ +++NV +A D +A+ G ++ + Sbjct: 121 LQKAKAAGIPVIAFDSGVDSDIPITTASTNNVAAAALAADKMAELIGGEGEIGVIVHDQT 180 Query: 160 TSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDE 217 + +R +GF + ++ Q D +K ++ + ++ AHP+++ F N+ Sbjct: 181 SVTGVDRRDGFVNRIKEKYPNIKIVDIQYGGGDHLKSTDLAKAMIQAHPNIKGFFGSNEG 240 Query: 218 MALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKV 276 A+G + A+ K + V+GFD A+ G +A I Q P IG + V+ A + Sbjct: 241 SAVGVINAVTELKKEGQITVIGFDSGKAQIDAIKSGVMAGAITQNPVGIGYETVKAAVEA 300 Query: 277 LKGEKVQAKYPVDLKLVVK 295 ++GEKV++ K Sbjct: 301 IRGEKVESTIDTGFYYYDK 319 >UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PVL5_9BACT Length = 858 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 121/243 (49%), Gaps = 6/243 (2%) Query: 56 GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 + +++N ++A ++ +G +++++P ++ A+ + A + V+ +DR Sbjct: 14 NVRVEFASAKDNNRVQIAQIERFIDKGADLIIVSPNEAKALTPVINKAFDRGVRVVLVDR 73 Query: 116 QATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA 175 ++ + + I +DNV G+ G ++ + G +V+ELQG+ G+S A ER GF++A+A Sbjct: 74 KSASDKYTAFIGADNVAIGRAVGRFVGEHLGGKGRVMELQGLRGSSPAIERDSGFREALA 133 Query: 176 AHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDV 234 + V+A+ AD+ +K + + VFAQ D M +GA +A Q G V Sbjct: 134 HYPQIKVVANAHADWFALKAETEATRMFKTVGEADLVFAQCDRMGIGAHQATQKLGIKGV 193 Query: 235 MVVGFDGTP---DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 +VG D P DG +AV +G AT G + ++ A +L+G + + + Sbjct: 194 KIVGVDALPTPGDGIEAVKNGTFLATFVYPTH--GDEVLKLAMNILEGRPFRRETILQTG 251 Query: 292 LVV 294 ++ Sbjct: 252 VID 254 >UniRef50_C0B6Q1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6Q1_9FIRM Length = 365 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 141/329 (42%), Gaps = 38/329 (11%) Query: 1 MNMKKLATLVSAVALSATVSANAMAK-------------------DTIALVVSTLNNPFF 41 M +K+ ++ A++A ++ T+ + + Sbjct: 1 MKKRKVLAVLLCAAMTAALAVGCGGSKGSDSSDKSSDSSSSSDDVITVGFSQVGAESDWR 60 Query: 42 VSLKDGAQKEA-DKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAV 100 + + + GY+L+ D+Q ++ +++ + +L+ P + Sbjct: 61 TANSQSMKDTFSKENGYDLIFDDAQQKQENQITAIRNFIQQEVDYILLAPVTETGWDTVL 120 Query: 101 KMANQANIPVITLDRQAT---KGEVVSHIASDNVLGGKIAGDYIAKKAGEGA------KV 151 + A A+IPVI +DR + I +D + G+ A +++ A + Sbjct: 121 QEAKDADIPVIIVDRMVDVSDDSLYTTWIGTDALCEGRKAAEWLNGFAEAKGIAASDIHI 180 Query: 152 IELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 ++QG G++A R +G ++ V + ++++A Q +F + KG VM+++L + ++ V Sbjct: 181 ADIQGTIGSTAQIGRTKGLEEGVDKYGWDLVAQQTGEFTQAKGQEVMESMLKQYDNINVV 240 Query: 212 FAQNDEMALGALRALQTAGK--------SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 + +ND A GA+ A++ AGK ++MV+ FD T G + V DGK+ + P Sbjct: 241 YCENDNEAFGAIDAIEAAGKTVGSDIANGEIMVISFDTTHAGLQDVLDGKIECDVECNPL 300 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKL 292 G + E K+ GE + VD ++ Sbjct: 301 H-GPRAEELIKKLEAGEDIDKLNYVDEEI 328 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 130/283 (45%), Gaps = 11/283 (3%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQ---KEADKLGYNLVV----LDSQNNPAKELAN 74 + + + +N F+ + K+G + K G ++ + +++ + Sbjct: 68 KVKGGLKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTM 127 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGG 134 +L +G L+++P + +V A IP I ++ + D G Sbjct: 128 TDNLVNQGYNALMLSPISDSNLTASVDNAKGKKIPTINVNDGLIASA-DYFVGPDAYQNG 186 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRI 192 ++A ++++K+ G+ V + G+A AARER GF+ + + NV+A Q AD+DR Sbjct: 187 ELAAEWVSKQLGDKGDVAIVIGMAKAFAARERTAGFKGWIKDNNSGLNVVAEQNADWDRQ 246 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDG 252 K + + +PD++A+F ND+MALG + A++ A K D++VVG DG + ++ G Sbjct: 247 KAKELASTWIQQNPDLKAIFCNNDDMALGVVEAVEEA-KKDILVVGVDGIGEAYDSIRAG 305 Query: 253 KLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 KL AT+ + E +VL G+ + L+ K Sbjct: 306 KLDATVDSFGYYMSQVATEVTLRVLAGQDIPRVTHTPQALIDK 348 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 30/315 (9%) Query: 1 MNMKKLATLVSAVALSATV------------------SANAMAKDTIALVVSTLNNPFFV 42 M +KK+ L+++ L + +AN+ +K I + + Sbjct: 1 MKLKKMMALMASAVLCIGMLSGCGGSGAGGGDSAKTSAANSSSKKIIGFAQVGAESGWRT 60 Query: 43 SLKDGAQKEAD-KLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 101 + D + ++L D Q ++ ++ + ++ ++P +K Sbjct: 61 AETDSIKSIPTLDPNFDLKFSDGQQKQENQIKAIRSFIAQKVDLIALDPVVETGWDTVLK 120 Query: 102 MANQANIPVITLDRQA---TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGA--KVIELQG 156 A A IPV+ +DR+ + SD V GK A + + G+ A + ELQG Sbjct: 121 EAKDAKIPVVIVDRKVTVSDDSLYKCFLGSDMVAEGKKAAQILIDQFGKDATLNIAELQG 180 Query: 157 IAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQ 214 G++A R +GF A+ + ++ SQ DF R KG VM+ L + D + +++ Sbjct: 181 TVGSTAMVGRQQGFNDAIKDCPNYKIIKSQTGDFTRAKGKEVMEAFLKSDGDKINVLWSH 240 Query: 215 NDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271 ND+MA+GA++A++ GK D+ +V DG D +A+ DGK AT+ P +G + +E Sbjct: 241 NDDMAMGAIQAIEEYGKKPGKDIFIVSVDGIKDIFQAMVDGKANATVECNP-LLGPQLLE 299 Query: 272 TADKVLKGEKVQAKY 286 A +L G++V+ Sbjct: 300 VAKNILDGKEVERTI 314 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 160/336 (47%), Gaps = 45/336 (13%) Query: 3 MKKLATLVSAVALSATVSANAMAKDT------------------------------IALV 32 MKK +L+ A+ L+ ++ A + T I + Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 33 VSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 P+F L +G ++L L V D+Q++ ++ +Q G ++++ P Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFIAEGCDLIIMMPVQ 120 Query: 93 SDAVGNAVKMANQANIPVITLDRQATKG-------EVVSHIASDNVLGGKIAGDYIAKKA 145 +++ N+A IP++T+DR+ + ++++H+ D+V GG+ G+ + + Sbjct: 121 LESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQLL 180 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLLT 203 G+ + +QG G S+ R +G ++ ++ + ++A+Q +D D+ + + V QN LT Sbjct: 181 GDEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAITVTQNFLT 240 Query: 204 AH--PDVQAVFAQNDEMALGALRALQTAGKSDVM--VVGFDGTPDGEKAVNDGKLAATIA 259 ++ A+ AQ+ ALGA+ A+++A + +++ V+G+D + ++ + + Sbjct: 241 RFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKAKDMYGSTL 300 Query: 260 QLPDQIGAKGVETADKVL-KG-EKVQAKYPVDLKLV 293 Q P +GA ++ A + L +G E+++A ++ +V Sbjct: 301 QAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVV 336 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 126/282 (44%), Gaps = 5/282 (1%) Query: 20 SANAMAKDTIALVVSTLN--NPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANV 75 S+ I +V T++ N F+ L +GA+ A++ G + V+ DS+++ + + Sbjct: 38 SSQNKRTYKIIMVPKTIDESNDFWTGLIEGAKLGAEEFGCEIEVVGSDSEDDYEGQNRLI 97 Query: 76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGK 135 ++ + LI P AV+ A A I VI +D K +A+DN GK Sbjct: 98 EESIKKNPDAFLIAPCSYTHTTEAVQEAINAGIKVILVDSVIDKEIANGVVATDNFKAGK 157 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL 195 G + +K+ + + G+S A ER +G ++ + + + + Sbjct: 158 ELGTFAKTILKPDSKIGVVAHVKGSSTATEREDGIREGLGEDQNRIQDIVYCNSSYDLAS 217 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKL 254 ++ + +L P++ V N+ A+GA R ++ G D V VVGFD + + + + G Sbjct: 218 DLTEKMLKERPEIDVVIGTNEYSAVGAARGVKKMGMEDQVKVVGFDNSVEQIQLLEAGVF 277 Query: 255 AATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + Q P IG GVE A K ++G ++ KL+ K+ Sbjct: 278 QGIVIQKPFNIGYLGVEQAVKAIEGYPMEYNLDSGCKLITKE 319 >UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QS72_MYCS2 Length = 348 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 91/333 (27%), Positives = 145/333 (43%), Gaps = 37/333 (11%) Query: 1 MNMKKLATLVSAVALSATVSA---------------------------------NAMAKD 27 MN K+L VAL+ ++A A Sbjct: 1 MNRKRLMLAAGVVALALPMAACTSSKPQADESSETPAAAGEAPAAAVTTVTAPPKASKNY 60 Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ-NNPAKELANVQDLTVRGTKIL 86 IA + + + F+++++ GAQ+EA LG + Q +P + + + L Sbjct: 61 NIAFLQGVVGDQFYITMQCGAQEEAANLGVTVNTQGPQKFDPTLQKPILDSIVASKPDAL 120 Query: 87 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-VSHIASDNVLGGKIAGDYIAKKA 145 L+ PTD A+ ++ A A I V+ +D VS IASDN GG+ A + I + Sbjct: 121 LVAPTDVQAMQMPLEQAAAAGIKVVLVDTTTNDPSYAVSAIASDNEGGGRAAFEAIKQLH 180 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTA 204 EG KV+ + G S R +GF++AVA F + Q + D ++ L Sbjct: 181 PEGGKVMVMGLDPGISTTDARTKGFEEAVAEDPGFTYVGVQYSHNDPATAAQLIGAQLQR 240 Query: 205 HPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 PD+ VFA N A G+ ++ AGKS+ V VVGFD P+ +A+ +G + A +AQ P Sbjct: 241 DPDLVGVFAANLFTAEGSATGIKQAGKSEQVAVVGFDAGPNQIQALREGTVQALVAQDPG 300 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 IG GV+ A L+G + ++ ++ Sbjct: 301 TIGKFGVDEAVTALEGGENSPNVQTGFTIITRE 333 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 149/298 (50%), Gaps = 6/298 (2%) Query: 3 MKKLATLVSAV-ALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 MK LV+A A + A+A I L V L FF +K G +K A + G +VV Sbjct: 1 MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 +D++N+ +++ VQDL ++ + P + A ++A +A IPVI +DR Sbjct: 61 VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFN 180 + IA ++V +I +KAG K+ + G GT+ +R G ++A+ + Sbjct: 121 GDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKRAIDENKGVE 180 Query: 181 VLASQPAD-FDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVG 238 ++ Q ++ + +G ++ QN+L A+PD+ +F Q D +A+GA +A+ A SD V++ G Sbjct: 181 LIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGG 240 Query: 239 FDGTPDGEKAVN--DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 +DG + + G AT Q ++G VE+A V GEKV+ + + L Sbjct: 241 YDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTT 298 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 158/318 (49%), Gaps = 25/318 (7%) Query: 1 MNMKKLATLVSAVALSATVSANA--MAKDTIALVVSTLNNPFFVSLKDGAQKEADKL--G 56 +N+ + ++SA + +A A K I ++ N+ ++ Q A + Sbjct: 2 LNITRRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKD 61 Query: 57 YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ 116 +L+V +++ AK++++V+ L V+G K+L+I+ DS A+ +K A IPVITL+R Sbjct: 62 VDLIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERS 121 Query: 117 ATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176 V H+ N G +AG YIA+ V+E++G + A ER EGF +A+A Sbjct: 122 LDIP-VTLHVGPHNKPIGTLAGKYIAEALKGKGNVVEIKGDPAVAPAVERHEGFAEAIAG 180 Query: 177 HKFNVLASQPADFDRIKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGKSD- 233 + V+A AD+D+ K L M++ L P +QAV+A ND MA GALRA+Q AG+ Sbjct: 181 TEIKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMAFGALRAIQAAGRDKE 240 Query: 234 -VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK--VQA------ 284 ++++G DG +AV G L AT + +GV A + + ++ Sbjct: 241 GILIIGIDGENAAIRAVAKGDLTATFTYS--TVAPEGVIAAHALATNDTAALEKLGTLTK 298 Query: 285 ------KYPVDLKLVVKQ 296 + + K++ K+ Sbjct: 299 KDDGSMEIEIASKMITKE 316 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 143/300 (47%), Gaps = 9/300 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG--YNLV 60 M K + SA+ + A +A A ++ + V +L N +FV+L A+ +A ++ ++ Sbjct: 23 MIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVI 82 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 +DS + K+ + + G ++L+ D A+ A+K A A I V+ D A Sbjct: 83 TVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGA 142 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 + + + ++NV G+IA YI K G I +Q S+ +R G ++++A + Sbjct: 143 D--ATVQTNNVQAGEIACQYIVDKLGAAGGQIIIQNGPQISSIIDRVSGCRKSLANNPKI 200 Query: 180 NVL-ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 +L Q R +G+ +MQ LT H + AVF D A G+ A Q G+++ + Sbjct: 201 TILSDDQNGKCSRDEGMKIMQGHLTRHRKIDAVFTVCDPQATGSDLAAQQFGRNEFFIAS 260 Query: 239 FDGTPDGEKAVNDG--KLAATIAQLPDQIGAKGVETADKVLKGEKVQ-AKYPVDLKLVVK 295 DG PD EKA G ++ A+ +Q P + + V+ +++ G+K + L+ K Sbjct: 261 VDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKKPDNPMILMPSTLLTK 320 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 132/275 (48%), Gaps = 3/275 (1%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV 80 A K +V+ + N FFV + +G K A+ G ++ + N +++ +++ Sbjct: 54 AGGADKIVCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFDNQISLIENFIE 113 Query: 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDY 140 +G +L++P DS+ + ++ A+ A IP IT+ Q + + ++ +I + Sbjct: 114 QGVDCILVDPLDSEGLKPVIEKASAAGIPTITMAGQVDVETNYTTV-YNDEENTRIIAEM 172 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQN 200 AK GE K L G G + R +G+ + + + QP ++D G+ Q+ Sbjct: 173 TAKMIGEEGKTALLYGNKGNLVSDLRQKGYYAGMEKYPNITVVEQPTNWDPPTGMKAAQD 232 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIA 259 L+ A+PD++A+ +D + L A +A++TAGK +++V +DG D KAV G+ +T+ Sbjct: 233 LIAANPDLKAIHCISDAVTLAAYQAVKTAGKEGEIIVTSYDGNDDALKAVESGQFTSTVL 292 Query: 260 QLPDQIGAKGVETADKVLKG-EKVQAKYPVDLKLV 293 + G ++ A ++ G + +D V Sbjct: 293 TGAKKTGYWNIQVALQLASGVRPAEKILNLDTHFV 327 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 232 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 76/298 (25%), Positives = 129/298 (43%), Gaps = 8/298 (2%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNL 59 MN ++ + L+ + A A IA T+ N F + + E + + Sbjct: 1 MN---TIRMLRVLLLAFCLPAVAAENKVIAFAQDTMANDFRRAQVYEVRDEVARYPQLSF 57 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 V D+Q + + ++ + +L++ D AV V A QA IPVI LDR Sbjct: 58 VYSDAQGQTSLLIRQIEQFIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGING 117 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF 179 + S I SDN+ G+I +YIA + V+ +G+ + R +GF + H Sbjct: 118 KQFTSFINSDNIRIGEIGAEYIASRLNGKGLVLLFEGLQKADVTQLRSKGFLTEIGKHSG 177 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMVV 237 + + ++ R + M+ L++ V A+F+++D M G L + V++V Sbjct: 178 IRVIRRTGNYLRKDAVVEMEKLVSDGIRVDAIFSESDSMLSGVRMVLSKSNIDPRSVVMV 237 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G D T + +A+ DG + ++ G K VE A K+ GE V +KLV K Sbjct: 238 GCDYTSEARQAIRDGTQSGSVLFP--LGGKKAVEIALKIFAGESVPKHIYNPVKLVTK 293 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 232 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 15/303 (4%) Query: 4 KKLATLVSAVALSATVSANA---MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 + +A L+ AL+ S N+ + T+ + + + + A G NL Sbjct: 6 RLIAGLLVGAALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLK 65 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA--- 117 D+Q ++ ++ + ++ +P + A A IPVI DR Sbjct: 66 FSDAQQKQENQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVK 125 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEGA---KVIELQGIAGTSAARERGEGFQQAV 174 V+ I SD + G+ AG ++ ++ A + ELQG G++ A +R G + + Sbjct: 126 DTSLYVTMIGSDFLEEGRRAGRWLEERYKNEAGPINIAELQGTVGSAPANDRHAGLMEVI 185 Query: 175 AAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGK- 231 F ++ASQ DF G VM+ + + V+A ND+MALGA++A++ AG Sbjct: 186 KNDPKFKIIASQSGDFTLAGGKQVMEAFAKTYGKQINVVYAHNDDMALGAIQAMEEAGIK 245 Query: 232 --SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVD 289 DV VV FD T G +A+ GK+ + P +G + + V+ G+++ + + Sbjct: 246 PGKDVSVVSFDATKGGFEAMIAGKINVDVECSP-LLGPQLMTAVKDVVAGKQLPKRIVTN 304 Query: 290 LKL 292 + Sbjct: 305 ETV 307 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 232 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 118/289 (40%), Gaps = 6/289 (2%) Query: 13 VALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPAK 70 S V A L+ + +P+++++++GA A K G ++ + A Sbjct: 30 TVHSLPVPAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAG 89 Query: 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDN 130 ++ V + GT +++ + A+ VK A +IPV+T+D + +A+ N Sbjct: 90 QIGMVNNAVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGLSPNISDCFLATSN 149 Query: 131 VLGGKIAGDYIAKKA-GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKF--NVLASQPA 187 V Y A G + + S R +GF + ++ + Q + Sbjct: 150 VGAAAALAKYTADHLMGGKGQYAIVDFNHTASTGIARPKGFMLGMKSYPHIKKMGPIQYS 209 Query: 188 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEK 247 + D GL + +LT +P ++ +F ND ALG A+Q A + V VVGFD Sbjct: 210 NNDVSAGLRIATTMLTQYPHLKVIFGANDRAALGPAEAVQRAH-AKVKVVGFDADLGEIA 268 Query: 248 AVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 V G + A+I Q P +G V L G+ + + L+ + Sbjct: 269 LVKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRINTPYFLLTPK 317 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 10/278 (3%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGT 83 I + P+ + Q+ + LV+ D Q N +++ V++ + Sbjct: 48 KSYVIGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFLTQQV 107 Query: 84 KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAK 143 IL ++ ++ + AV IPVI LDR+ T + S ++ DN AG Y A Sbjct: 108 DILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEKFTSFVSGDNRAIAHEAGLYAAS 167 Query: 144 KAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLL 202 +G V L+G+ +S A ER EGF+ ++ + ++A QP D+ + K + V +L Sbjct: 168 LLPDGGDVAILEGLPSSSPAIERLEGFKAGISTNPKVKIIAVQPVDWMQDKAVEVFSAML 227 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTP---DGEKAVNDGKLAATI 258 AHPD++ V+ ND A GA A++ AGK V ++G DG P G +AV +G+ AT Sbjct: 228 QAHPDIKLVYTSNDLAAAGAYIAVKQAGKLGQVKIIGTDGLPGPSGGIRAVAEGQWTATY 287 Query: 259 AQLPDQIGAKGVETADKVLKG--EKVQAKYPVDLKLVV 294 A+ ++ A K+L V V + + Sbjct: 288 VYP--TGAAEALDLAKKILIDCASSVPRLVTVPTQRID 323 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 136/299 (45%), Gaps = 11/299 (3%) Query: 6 LATLVSAVALSATVSANAMAKDT------IALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59 L L + L + A T NNP+F L +G ++ + G L Sbjct: 7 LLILTAGAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDIL 66 Query: 60 VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + D + K+ +Q++ G ++L +NP D + V A+ +A + +I +D Sbjct: 67 LTRDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGIINVDTVVKD 126 Query: 120 -GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA-H 177 V+S I +DN G++ + K+ + AK++ L TS R +GF +A H Sbjct: 127 RDSVISIIETDNYQAGQLCALDMMKR-KDEAKIVILDNPIQTSITN-REQGFLDTIADNH 184 Query: 178 KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMV 236 + V+ + A + +VM +LL + ND ALGAL ALQ A + + V++ Sbjct: 185 NYQVVYREAAAGEIEVSSHVMADLLRRDISFDVILGGNDPTALGALAALQQARREEGVLI 244 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 G DG+PD + ++ G + T AQ P IG K ETA + L GE V+ + ++ + Sbjct: 245 YGIDGSPDFKAILDVGYVTGTSAQSPRSIGRKAAETAYRYLDGEPVEKYISMPSTMITR 303 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 149/288 (51%), Gaps = 16/288 (5%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPAKELANVQDLTVRG 82 + A+++ T F+V + G + E G + + +Q ++ +L ++ +G Sbjct: 63 SDKKYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQG 122 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-------KGEVVSHIASDNVLGGK 135 + I P V + A I ++ +D + G V+ +A+DNV G Sbjct: 123 YDGIAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGA 182 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL 195 YI AGEGAKV ++G +G ++ +R +G +QA K ++++SQ AD+DR K + Sbjct: 183 KGAQYIVDTAGEGAKVAIIEGKSGNQSSEDRTQGAKQAFTDGKMDIISSQAADWDRQKAM 242 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKL 254 ++ L+ +PD++ ++ ND MALGA++A+ A K ++M+VG DG + ++ + +L Sbjct: 243 DIASTLIQQNPDLKGIYCCNDGMALGAVQAVINANKLGEIMIVGTDGDAEAVSSIANNEL 302 Query: 255 AATIAQLPDQIGAKGVETADKVLK-GEK-----VQAKYPVDLKLVVKQ 296 +AT+AQ P QIGA ++ + ++ G+K K PV+ LV + Sbjct: 303 SATVAQDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTAE 350 >UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional regulator n=21 Tax=Bacteria RepID=Q2RGX1_MOOTA Length = 381 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 15/292 (5%) Query: 18 TVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 77 SA K I L + L + +D +A +LG ++V + + A +L+ ++ Sbjct: 40 GASAKNGDKIKIGLSMDDLRQERWQHDRDLFVAKAKELGAEVLVQSANGDDATQLSQAEN 99 Query: 78 LTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIA 137 L +G +L++ P + DA+ V+ A++A + V+ DR +V +I+ DNV G++ Sbjct: 100 LISQGINVLVVIPHNGDAMAPIVEAAHKAGVKVLAYDRLIRNADVDLYISFDNVRVGELQ 159 Query: 138 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA----AHKFNVLASQPA-DFDRI 192 +Y+ KK K + G + A+ +G + V+ Q D+ Sbjct: 160 AEYLTKKVP-KGKYFLMGGSPTDNNAKLFRQGQMNVLKPLIDKGDIKVVGDQWVKDWLPE 218 Query: 193 KGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVN 250 + + +M+N LT++ + + AV A ND A GA++AL V + G D + + Sbjct: 219 EAMKIMENALTSNNNQIDAVVASNDSTAGGAIQALAAQNLAGKVAISGQDADLAACQRIV 278 Query: 251 DGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK-------YPVDLKLVVK 295 +G + T+ + + + E A + KGE + A V L+ Sbjct: 279 EGTQSMTVYKPITTLATRAAEVAVALAKGENIGANNKVNNGKIDVPSVLLTP 330 >UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Proteobacteria RepID=A5FXE6_ACICJ Length = 328 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 147/283 (51%), Gaps = 4/283 (1%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76 A S TIA+ V +L+NPFFV+ + A +EA KLGY +V N +L ++ Sbjct: 31 AIHSQKGSNGKTIAIFVPSLSNPFFVAEEKFAAEEATKLGYGTMVASHNGNAYTQLNLIK 90 Query: 77 DLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGEVVSHIASDNVLGGK 135 R ++++ +D+ +AVK+A +A +PV +DR+ KG + I S+N G + Sbjct: 91 TAIARHVAAIILDNAGADSSISAVKLATKAGVPVFLIDREINAKGIAKAQIVSNNFQGAQ 150 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKG 194 + G AK G +EL G+ + A+ R +G + ++A Q AD+ + KG Sbjct: 151 LEGTEFAKLMGYKGTYVELTGLPSDTNAKVRSQGVASVLKHFSGMKMVAVQTADWSQSKG 210 Query: 195 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKL 254 V Q LL AHP ++ + A ND MA+GA AL A K +V+V GFDG+PD ++ G++ Sbjct: 211 FQVTQTLLEAHPHIKGLIADNDTMAMGAEAALLAAHKPNVIVTGFDGSPDVINSIRKGQI 270 Query: 255 AATIAQLPDQIGAKGVETADKVLK-GEK-VQAKYPVDLKLVVK 295 A + Q + V ADK ++ G+ K ++ L+ K Sbjct: 271 KADVLQPIATFSREAVIEADKYIRTGKTGKPEKQELNCTLITK 313 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 79/313 (25%), Positives = 154/313 (49%), Gaps = 20/313 (6%) Query: 1 MNMK-KLATLVSA-VALSATVSANAMAKDTIALVVSTLNNPF-----FVSLKDGAQKEAD 53 M K K+ L++ L A V + AK I + V + ++ + + + K A +A Sbjct: 1 MKYKNKIMRLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAK 60 Query: 54 KLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 + V+ + ++ +K++ +V+DL ++G L+I P + + ++ A I + + Sbjct: 61 EKDIEFFVV-ASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVV 119 Query: 114 DRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 DR+ IA DN G++ ++AK+ V+ ++G+ ++R + F Sbjct: 120 DRELAHPAQNVFIAGDNAGLGRVGAQWLAKEMSGKGNVVVIEGLQ-IPINKQRVDAFNDV 178 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232 +A + +L SQP D+ K L+VM+N L HP + AV+ Q+D+M G L+A++ +G++ Sbjct: 179 IAGYPNIKILDSQPGDWSTQKALSVMENFLQKHPKIDAVWCQDDDMLKGVLKAIEESGRT 238 Query: 233 DVM-VVGFDGTPDGEKAVNDGK--LAATIAQLPDQIGAKGVETADKVLKGEKV------Q 283 D+ V+G G+ D + + G + AT+ P + A G+ A +K EK+ Sbjct: 239 DIKTVLGGAGSKDIIEMIQSGNKMVRATVTYSP-SMIASGIALAVHGVKHEKLGYLYHEP 297 Query: 284 AKYPVDLKLVVKQ 296 ++ + LV K+ Sbjct: 298 SRVILGADLVTKE 310 >UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIT8_9CLOT Length = 338 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 95/327 (29%), Positives = 154/327 (47%), Gaps = 32/327 (9%) Query: 1 MNMKKLATLVSAVALSATVSANAM----------------------AKDTIALVVSTLNN 38 M +K+ + + + V+A K T V T + Sbjct: 1 MKLKRFLAMGMSAVMIMAVAAGCGGSDSGSSSTAASSGAASSGASGEKLTFGWSVYTRDQ 60 Query: 39 PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGN 98 FF L+ G +A +LG + D +N+ + + +L G L++ P +A+GN Sbjct: 61 TFFQQLEKGVVDKATELGIEIKTHDQKNDSNEMVTGCTNLINSGVDALIVCPCKPEAMGN 120 Query: 99 AVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG----AKVIEL 154 V +A+Q +IPVI D + + I SD GG++AG Y A+ E +V + Sbjct: 121 IVTLAHQKDIPVIITDIGDGDSDKDAIIISDMKAGGQMAGVYTAELLKEKSITSGEVAII 180 Query: 155 QGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 214 + A+ R EG+++ + F V A+ + +G VM+++L ++PD+ AVFA Sbjct: 181 KCEESAVYAQRRNEGYKEEIEKAGFTVAKELVANSKQEEGYTVMKDILASNPDIVAVFAA 240 Query: 215 NDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETAD 274 ND MA GA ALQ AGK+DV+V GF+G + + DGK+ T+AQ IGAKGVE A Sbjct: 241 NDPMAAGAASALQEAGKTDVIVTGFNGDDIALEYIADGKMMGTVAQDVLGIGAKGVELAK 300 Query: 275 KVLKGEKVQ------AKYPVDLKLVVK 295 ++G+ + + V + + K Sbjct: 301 LAVEGKDIPYDNADKKEVYVPVSFIGK 327 >UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Actinomycetaceae RepID=C2KRR4_9ACTO Length = 326 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 16/304 (5%) Query: 7 ATLVSAVALSATVSANAMAK----------DTIALVVSTLNNPFFVSLKDGAQKEADKLG 56 ++ ++L+A S+ A + I LV + F+ S+K GA ++ +LG Sbjct: 10 LGAIACLSLTACGSSPASSDGKSADAKSNSKKIILVSKGFQHTFWQSVKKGALEKGKELG 69 Query: 57 YNLVVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD 114 Y + + +N A ++L +++ + + DS A ++ A IPVI D Sbjct: 70 YEVEFIGPKNETAVTEQLDQLKNALNAKPAAIGLAALDSKAAEPILQQIKNAGIPVIAFD 129 Query: 115 RQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV 174 ++ + +DN G A + +A+ G V + T+ + R GFQ + Sbjct: 130 SGVDSDIPLTTVQTDNRTAGAKAAEKLAQLMGNKGTVGIVCHGQATTTGKGRCFGFQDWM 189 Query: 175 AAH--KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK- 231 H +L Q AD +R K + + ++ ++ DV A++ N+ A G L+ ++ AGK Sbjct: 190 KEHAPDIKLLQEQWAD-ERGKAADAAKAIVKSNTDVTAMYGSNEVTAAGVLQGVKEAGKM 248 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 + +VGFD A+ G A I Q P ++GA+ V ADK +KGE ++ Sbjct: 249 GQITIVGFDSGKAQIDAIKSGDEAGAITQAPVKMGAETVAAADKAIKGESLEKIIDSGFA 308 Query: 292 LVVK 295 K Sbjct: 309 WYDK 312 >UniRef50_C1D5Z3 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5Z3_LARHH Length = 332 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 140/304 (46%), Gaps = 11/304 (3%) Query: 2 NMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 N K+ + +A A S IALV+ +L+NP+F+ ++ GA++ + L V Sbjct: 24 NRPKIEAVTTASAASPESGKATGNLPRIALVMKSLSNPYFIEMEKGARQAQTENRAELFV 83 Query: 62 --LDSQNNPAKELANVQDLTVRG-TKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + + + +++ + D+ ++I P DS + + A++A I +I LD + Sbjct: 84 KAVGLETSIDQQIQFIDDIINNKLADAIIIVPADSSRLAPVIARAHKAGIHIINLDTRLD 143 Query: 119 KGEVV-------SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ 171 + I DN A ++A ++V ++G + A R EG + Sbjct: 144 ADALAQEGIGPLPFIGVDNHRAAYKAAAHLAASLPPKSEVAIIEGNSNAINALRRSEGAR 203 Query: 172 QAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 QA+ A ++ SQ + + + + NLL +P+++ ++ +D +ALG +R L G Sbjct: 204 QALEAAGMRLVPSQSS-WTIEQAYEITGNLLKQNPELRGIYCISDLIALGVIRYLADHGI 262 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 V V GFDG A+ ++ AT+ Q P + G V+ A + G+ V + V+ + Sbjct: 263 RQVKVAGFDGIAQARAALASNQMVATVDQRPAEQGYLSVKAALDAIAGKPVTGQIKVETE 322 Query: 292 LVVK 295 L+ + Sbjct: 323 LLTR 326 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 19/305 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MK++ +A+ L+A+ + I + +++ N+ F + + EA K L V Sbjct: 1 MKRMIIGTTAMFLAASSAYAGD----IGVTIAS-NDTFLAVMVQAMKDEAAKTNQPLQVE 55 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--- 119 + + K+L+ +Q+ +++N +S A KMA A IP++ ++ + Sbjct: 56 FADADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQ 115 Query: 120 -GEVVSHIASDNVLGGKIAGDYIAKKAGEGAK-----VIELQGIAGTSAARERGEGFQQA 173 G + I S + G + + + E K ++ +QG+ AA +R + Sbjct: 116 LGPKAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDV 175 Query: 174 VAAHK---FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG 230 VA + ++ Q A +D +K ++M N +TA AV + ND+MALGA+ +L+ AG Sbjct: 176 VATPECNFMKIIDEQTAQWDPVKAQDLMTNWITAGHKPVAVLSNNDDMALGAVNSLKAAG 235 Query: 231 --KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 DV+V G D T + V G L AT+ Q GA V+ A K+ KGEKV++ + Sbjct: 236 WEMKDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESPVWI 295 Query: 289 DLKLV 293 +LV Sbjct: 296 PFELV 300 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 120/276 (43%), Gaps = 7/276 (2%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKE--ADKLGYNLVVLDSQNNPAKELA 73 ++ A + V L F + +K L V D + + + Sbjct: 42 GPALAQQAKKTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQNN 101 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 + + + +L P D A +AV A +ANIPV+ + + +++S++ S++V+ Sbjct: 102 QFETMITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDKLLSYVGSNDVIA 161 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G + + G V+ L+G G S ER +G +A + VL + A++ R Sbjct: 162 GAMQAQAVVDAMGGKGNVVILEGPIGQSGQVERRQGNLSVLAKYPNVKVLEMKTANWSRA 221 Query: 193 KGLNVMQNLLTAH-PDVQAVFAQNDEMALGALRALQTAG--KSDVMVVGFDGTPDGEKAV 249 + L++ +N LTAH + + QNDEMALGA+ A++ G + G DG D +AV Sbjct: 222 EALSLTENWLTAHAGKINGIIGQNDEMALGAIEAVKAKGLDPKTIPTAGIDGVSDAVRAV 281 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 G + A++ Q ++ + L G + + Sbjct: 282 KAGIM-ASVLQDASAQSQGALDVLLRKLIGASYKPR 316 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 10/293 (3%) Query: 8 TLVSAVALSATVSANAMAKD---TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64 + ++ L+ +A+ A D I + V+ NPFF A+ +G ++ + Sbjct: 19 CVFGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVA 78 Query: 65 QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS 124 + + + G K ++I+ D+D VG AVK A A IPVI +D Q Sbjct: 79 NEDVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQ--SKNATV 136 Query: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLA 183 +I +DN G+I+ +A K G K+ L G SA +R G + + + ++A Sbjct: 137 NITTDNKQAGEISCRSLADKLGGKGKIAILNGTP-VSAVDDRVTGCKGILGQYPDIKIVA 195 Query: 184 SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP 243 Q + R L + ++LTA+PD+ FA ND A+G A + G S V++ DG Sbjct: 196 DQRGENSRDSALPIATDILTANPDLDGFFAINDPSAVGVQLAAEQKGAS-VVITSVDGAS 254 Query: 244 DGEKAVND-GKLAATIAQLPDQIGAKGVETADKVLKGEKVQ-AKYPVDLKLVV 294 A+ G + AT AQ P + + ++ ++ G++ V +LV Sbjct: 255 SATDAIAAGGLITATAAQDPAALMRQAIDLGISIVNGKEPDQKVILVPTELVD 307 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 5/298 (1%) Query: 3 MK-KLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 MK ++ L +A + + +A+A K TI ++V++L+NP++ S GA ++A LGY V Sbjct: 1 MKLRITLLTAATLTAFSFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTV 60 Query: 62 LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 L + K+ + + + ++++ DS A A++ A +A IPV+ ++R+ + Sbjct: 61 LSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDD 120 Query: 122 VVS-HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 V I +N G + +K E K EL + R + F Q + + Sbjct: 121 VALEQITHNNFQAGSEVANVFVEKMAEKGKYAELTCNLADNNCVTRSKSFHQVIDQYPDM 180 Query: 181 V-LASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239 V +A Q A I G +M ++L AHPDV+ V N +ALGA+ AL+ A +SDV+VVG Sbjct: 181 VSVAKQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGI 240 Query: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL-KGEKVQA-KYPVDLKLVVK 295 DG+ D AV G L AT+ I A+GV D L KGEK + L+ + Sbjct: 241 DGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQ 298 >UniRef50_B6BMJ9 Periplasmic binding protein/LacI transcriptional regulator, putative n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMJ9_9PROT Length = 307 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 72/300 (24%), Positives = 139/300 (46%), Gaps = 8/300 (2%) Query: 3 MKKLATLVSAVALSATVSAN---AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYN 58 MKK+ + ++ L++ ++A TIA TLNN + + +K K Sbjct: 1 MKKIFIFIVSILLASILNAGELDKSKTYTIAFAQDTLNNDYRLKQVKEVEKALLKYPNIR 60 Query: 59 LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + D++ + + ++ ++D +G +L+ +P D D+ + A ++NIPV+ + R+ Sbjct: 61 FIYSDAKASASMQVKQIEDFISQGVDLLMTSPYDEDSTRQVISKAYKSNIPVVLVSRRVK 120 Query: 119 KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 178 + S+I +N K A Y+ KK V+ L+G+A T+ R R EGF + V + Sbjct: 121 GNDFTSYIHPENRQIAKDAAKYLVKKMNYKGTVLLLKGVAKTNVERMRTEGFFEVVNKYP 180 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMV 236 + + A++ R + + LL+A AV +Q+D M +G + G S ++ Sbjct: 181 NIKVIERTANYLRRDAIIEVDKLLSAGQKFDAVMSQSDSMLVGVRMVFKKYGIKPSSLVT 240 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 VG D + A+ DG+ ++ + + A K+L GE V + +D + ++ Sbjct: 241 VGIDYIKPAQDAIRDGEQNSSFVYS--LCAKESADIAIKILSGESVAKEIKLDTNQITRK 298 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 128/276 (46%), Gaps = 5/276 (1%) Query: 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPAKELANVQDLTVR 81 A + V TL N ++ SL +G A KLG V +Q + +LA ++L + Sbjct: 54 AAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENLISQ 113 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYI 141 G LL +P + AV+ A A +PV+ ++ +++ + G ++ Sbjct: 114 GFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSA-ANYVGNVQKGNGVNVANWF 172 Query: 142 AKKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDRIKGLNVMQN 200 +G KV ++G G AA +R GF + + A KF V+AS PA++ R + N Sbjct: 173 IANRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSREEAFNAAST 232 Query: 201 LLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIA 259 +L +PD+ +A ND MALG + A++ AGK V V G DG D AV G L T+ Sbjct: 233 ILQQYPDLIGFYANNDGMALGVVEAVKAAGKAEQVAVFGTDGISDAYAAVRAGDLTGTVD 292 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 P G +E A +++ G+ + L+ K Sbjct: 293 SFPVLTGEIAMEVALRLMAGQDLPRVVATPQALITK 328 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 19/311 (6%) Query: 3 MKKLAT----LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQK-EADKLGY 57 MK+ L SAV L+ + +A + P+ + +K A + Sbjct: 1 MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 LV+ D+Q + +K++A V+ + +L++ P + A+ + A +A IPVI L+R Sbjct: 61 KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI 120 Query: 118 TKGEVVSHIASDNVLGGKIAGDYIAKKAGEG-----AKVIELQGIAGTSAARERGEGFQQ 172 + S+I SDNV G++AG +I + V+ ++G+ G R G ++ Sbjct: 121 LQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRGAKE 180 Query: 173 AVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 + + ++A AD+ + K + M +L A P + V+ ND MA+GA + G+ Sbjct: 181 ILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYLGAKELGR 240 Query: 232 SDVMV-VGFDGT---PDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK--GEKVQAK 285 M+ VG DG G K V DG LAAT K VE ++L+ G Sbjct: 241 EKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWV--DKAVEIGTRILREPGFVPAKD 298 Query: 286 YPVDLKLVVKQ 296 Y ++ +V + Sbjct: 299 YVLESVMVTTE 309 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 12/303 (3%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 MN K L V+A+ SA T+ V + ++ + A +LG ++ Sbjct: 1 MNKKTLFAGVAALI----ASAGFAEAKTVCYVTAADSHAYVTPANKAIDARAKELGVEVL 56 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 L + + + R +++ P D A + A A IPV ++ Sbjct: 57 SLSQNFDVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMNDA 116 Query: 121 E---VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA- 176 V S D G++A + + K ++ + G AG R +GF + A Sbjct: 117 AKPFVTSFTGPDVYSEGEMAAEALQKALDGKGSIVIIAGQAGNGTTIGRVDGFNAKLKAL 176 Query: 177 -HKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTA--GKS 232 K VL + ADFD+ K L ++L+T D + V+A +D MA G + A + A GK+ Sbjct: 177 GSKIEVLDTVNADFDQQKALVASRDLITRFGDKIAGVYANDDTMARGFIDAWKEAKSGKA 236 Query: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292 +VG +G D +++ +G++ ATI Q P + G + VL G+K+ A+ P+ L + Sbjct: 237 TPPIVGINGQKDAFESIRNGEMYATIVQSPIEDGLLAINAMADVLNGKKIDARLPIPLTV 296 Query: 293 VVK 295 V K Sbjct: 297 VTK 299 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 141/276 (51%), Gaps = 10/276 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 + ++ + V+ D QKEA+ GY V+ +++ + AK++++V+DL + L Sbjct: 72 KVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFLF 131 Query: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKG---EVVSHIASDNVLGGKIAGDYIAKK 144 I P D +A+ A++ A +P I LDR+A + + I S+ + G+ D++++ Sbjct: 132 IAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYIWQGEACADWLSEN 191 Query: 145 AG-EGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLL 202 G + K++++ G G S R+R GF+ V + ++A+Q ++ R + VMQN++ Sbjct: 192 GGADSYKIVQITGKVGGSDVRDRQAGFETGVKKYENMEIVATQSGEWSRTEAQKVMQNII 251 Query: 203 TA-HPDVQAVFAQNDEMALGALRALQTAGK---SDVMVVGFDGTPDGEKAVNDGKLAATI 258 + D V+ NDEMALG + AL+ AG +DV V+ DG + +A+ G++ Sbjct: 252 QSTGGDFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAIIAGEMNCIA 311 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P G +T +K L EK++ + ++ Sbjct: 312 TCNPR-FGPVAFDTMEKYLNEEKLEHIINNEEYIID 346 >UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YAA5_DICT6 Length = 331 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 126/309 (40%), Gaps = 13/309 (4%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADK------ 54 M + + + L +A K A + LNNP F +DGA K A++ Sbjct: 1 MKKFLMIFFIVVIFLLMATTAQTPKKLVFAWIPKALNNPVFELGRDGAFKRAEELSKKGP 60 Query: 55 LGYNLVVLDS-QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 ++ + S ++ ++ V+D+ R + I+ D A+ + + A +A IPV+T Sbjct: 61 YKVEVLYVASVASDATEQARVVEDVVARKVDGIAISCNDPTALIDVINKAVEAGIPVMTF 120 Query: 114 DRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 173 D + K + +++ +N GGK A + + G V L G+ G ER GF+ Sbjct: 121 DADSPKSKRFTYLGVNNYEGGKWAAKLLVRAMGTSGDVALLTGVPGALNLEERMRGFKDE 180 Query: 174 VAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL----QT 228 + + ++ + D +G+ V++ + +P ++ F L ++ + Sbjct: 181 IKKYPKIKIVTTVACYDDINRGVQVVEETMQKYPKLRGWFFVGLWPLLAERGSMPLWEKA 240 Query: 229 AGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETAD-KVLKGEKVQAKYP 287 A V V FD P + + +G L + Q G ++ KV+ EK Sbjct: 241 AKAKKVFTVAFDTLPVELQLLKEGYLCGLVGQKYWGWGYDAIDILYRKVVNNEKFPDWID 300 Query: 288 VDLKLVVKQ 296 + +V ++ Sbjct: 301 SGMDIVTQK 309 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 18/286 (6%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QNNPAKELANVQDLTVRGTKI 85 +T +V ++ G Q A LG V + Q + +E+ +Q + + Sbjct: 56 ETYYMVTFLSGIEYWKGCFAGMQAAAKDLGVKAVFTGAPQYDINQEVTTMQQVIAKHPAG 115 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +L+ ++ A+ + A A IPVI+ D A + + +++ + N+ G+ A DY+ + Sbjct: 116 ILVTSINAQAMTPVINQAIAAGIPVISFDSDAPQSKRYAYLGTSNIEAGQKAADYLGQAL 175 Query: 146 GEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLT 203 G +V + G +R +GF+ +AA V+A Q + D+IK V LL Sbjct: 176 GGHGEVAVIT-TPGELNLDQRVQGFKDEMAAKYPGVKVVAVQNGNSDQIKTAQVTSALLQ 234 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 +P++ +F + GA A+Q AGK+ V +V FD A+ G++ AT+AQ Sbjct: 235 TYPNLAGIFCTEADEGTGAATAVQEAGKTGTVKIVSFDTDKATLNAIKSGQITATVAQGT 294 Query: 263 DQIGAKGVETADKVLKG-------------EKVQAKYPVDLKLVVK 295 +G G+ + + V + + +V K Sbjct: 295 WNMGFWGLMDLFAIHHNLVHPVANWQQSGVDPVPPEVDTGVTIVTK 340 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 9/297 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS- 64 L + ++A + + + L+ T +NP+FV L++ AQ +ADK G L+ + Sbjct: 16 LMAGSLVLGMTACGGSGSDG-VKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGA 74 Query: 65 -QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE-V 122 + ++ ++++ +G K +LI P S V +A+K A A + VI LD + V Sbjct: 75 FDGDNEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDAV 134 Query: 123 VSHIASDNVLGGKIAGDYIAKKAGEG-AKVIELQGIAGTSAARERGEGFQQ--AVAAHKF 179 + A+DN G G ++ G +V+ L G G + R +GF + + + Sbjct: 135 DATFATDNKAAGVAQGKWVKAALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLTDNSP 194 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSD-VMVVG 238 ++ + + D+ K M+NLL P V A++ N+ A GA +A+Q G++D V + Sbjct: 195 EIVGQENTNGDQTKAQTAMENLLQRAPGVNALYTINEPAAAGAYQAIQAVGRADQVTIGS 254 Query: 239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK-GEKVQAKYPVDLKLVV 294 DG+ G V GK+ AT+ Q P ++ GV+ K + G K +L+ Sbjct: 255 IDGSCTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGFNDTGSELIT 311 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 154/309 (49%), Gaps = 14/309 (4%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M+ K + A + AMA +++ TL NPF+ ++ G + A + G Sbjct: 1 MSRLKTTLKLGAAFATLLAVTPAMADGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYY 60 Query: 61 VLDSQNNPAK--ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT 118 + +++ A +L + R ++ +S + +K A A I V+ LD Sbjct: 61 MQAVESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLD 120 Query: 119 KGEVVS-------HIASDNVLGGKIAGDYIAKKAGEGAK--VIELQGIAGTSAARERGEG 169 + + + I SDNVL G +Y+ + G A V+ ++G++G ++R G Sbjct: 121 QAILDAEGIEITFRIGSDNVLAGAQGAEYVVSQLGADATGPVLVIEGLSGNITGQKRASG 180 Query: 170 FQQAVAA--HKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 F +A ++AS P D+DR K N+ ++LT +P + A+FA ND MALGA+ ++ Sbjct: 181 FADKLAELAPGLEIVASLPGDWDRGKAANITNDILTRNPGLVAIFAANDGMALGAVESVF 240 Query: 228 TAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKY 286 AGK +V++VG DG D K++N+G+L A++AQLP +G + VE ++G +V + Sbjct: 241 AAGKGGEVIIVGVDGNSDAVKSINEGRLTASVAQLPYLVGKQAVENVKIAVEGGEVAKEI 300 Query: 287 PVDLKLVVK 295 V ++ K Sbjct: 301 IVPTLVLTK 309 >UniRef50_A0LA89 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LA89_MAGSM Length = 374 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 139/300 (46%), Gaps = 9/300 (3%) Query: 3 MKKLATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEAD-KLGYNLV 60 M+ L +V + A+A + TL+ P+ + + + ++ Sbjct: 69 MRTLPAIVMMTLYALAGLAHAQQPPWRVGFCQDTLDIPWRAAQAMTFSQTLQTDKRFQVI 128 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 + D++ N ++ +++ + RG +L+ +P D + + + +PV+ L R+ Sbjct: 129 LSDAKGNTTQQAIDLEHMVERGVHVLVTSPRDGAVLTPVISNIYRQGVPVVLLSRRTLDE 188 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-F 179 + IA D+ G+ A Y++K+ E K++ +QG+ S ++R GF Q ++ H Sbjct: 189 NFTTFIAPDDAEIGRQAARYLSKRLNEKGKILVIQGLGSASTTQQRTVGFIQELSLHPHM 248 Query: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG--KSDVMVV 237 ++A A++ + + +M+++L A++ +D MALGA+ AL+ AG + + +V Sbjct: 249 QIVAQPFANYKKEMAILIMESILAQKLPFDAIYVHSDAMALGAILALKRAGIDPTKLPIV 308 Query: 238 GFDGTPDGEKAVNDGKLAATIAQL-PDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 D T G +++ G++ A + G V+ ++L G+ V V LV ++ Sbjct: 309 SIDYTRAGRESLRKGEIDAIFTYPNGVKQGITAVK---RILAGQPVNKFQTVPSTLVTQE 365 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 4/277 (1%) Query: 22 NAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR 81 +K I T+NN +F + + + ++ G L+ D + K++ + D Sbjct: 39 GVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGDTLITRDPALSLDKQIEEIYDFIDL 98 Query: 82 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS-HIASDNVLGGKIAGDY 140 + INP D + NA+ A +A I +I +D ++ + + SDN G + + Sbjct: 99 KVDAIFINPVDWVGIRNALIDAQKAGIIIIAIDTDIYDDDLTACTVVSDNYKAGVLCAED 158 Query: 141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQ 199 + K A +I L+ +A +R GF+ A+ + F V+A D + V++ Sbjct: 159 LMNK-RNSANIILLEH-KSAKSAIDRINGFEDAIRNNKNFKVVARSDCDGQLETAMPVVE 216 Query: 200 NLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIA 259 N+L DV + A ND ALG + AL+ + V G DG+PDG+K V + K++AT++ Sbjct: 217 NILLKQKDVDTIMALNDPSALGGIMALEEKNIKGINVYGIDGSPDGKKMVKEDKMSATVS 276 Query: 260 QLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q P +IG E+ + +G++V K V ++L+ K+ Sbjct: 277 QSPRKIGRISGESLYNIFQGKEVDKKIVVPVELITKE 313 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 123/280 (43%), Gaps = 5/280 (1%) Query: 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNN--PAKELANVQDL 78 A A + I LV + F+ ++K GA++ A L + + K++ + Sbjct: 22 AQAQQEIYIPLVSKGFQHQFWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAA 81 Query: 79 TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAG 138 + + + DS A +K A A IPV+ D V+ +DN +A Sbjct: 82 LAKKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTTTTDNKAAAALAA 141 Query: 139 DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLN 196 D +A+ G+ +V + + +R +GF + + +++ Q D++K Sbjct: 142 DKMAEMIGKSGEVALVVHDQTSRTGVDRRDGFVNRIKSAYPNIKIVSVQYGGGDQLKSTE 201 Query: 197 VMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAVNDGKLA 255 + +++L A P+++ +F N+ A+G + ++ + V+++G+D + A+ DG +A Sbjct: 202 ITKSILQASPNLKGIFGANEGSAIGVVNGVKEMKRSGKVVIIGYDSGKQQKNAIMDGSMA 261 Query: 256 ATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 I Q P +G K VE A K +KGEK+ K Sbjct: 262 GAITQNPVGMGYKTVEMAVKAIKGEKLPKVVDTGFFWYDK 301 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 144/286 (50%), Gaps = 9/286 (3%) Query: 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVVLDSQNNPAKELAN 74 +A TIA++ + F V + GA+K+A +LG +V D + KE+A Sbjct: 43 AAAAQGEGKDGYTIAVLAWSQAEEFGVDIISGAEKKAAELGNVTVVKPDPAGDMQKEIAI 102 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGG 134 ++DL +G + + P D++A+ + +A I ++ D T+ + + + SDN GG Sbjct: 103 LEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDID-TEAQCDAKVLSDNAAGG 161 Query: 135 KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRI 192 +A DY+ ++ G KV+ L + G + A ER GF+ +A ++ Q ++ R Sbjct: 162 AMAADYLVQEMGTEGKVLILTEVPGVTTAEERIAGFKDRMAEIAPNVEMV-EQLSNGTRD 220 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVN-D 251 +N+L AHPD+ +F + +LGA A +T + DV++ G+D TP+ + D Sbjct: 221 THRATTENMLQAHPDITGIFCFMGDNSLGAYTACKTNNRQDVLIAGYDATPEQLDIMKND 280 Query: 252 GK---LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 G L ++A P +IG +ETA +L+GE++ +L L+ Sbjct: 281 GPDCNLICSVALYPKKIGYVALETAYNILEGEEINDVVWTELGLLT 326 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 12/297 (4%) Query: 1 MNMKKLATL----VSAVALSATVSANA-MAKDTIALVVSTLNNPFFVSLKDGAQK--EAD 53 MNM K A L V + +A A A IA +V +LN + V D A+ Sbjct: 1 MNMTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALA 60 Query: 54 KLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 113 L VLD + + + ++ P D DA ++ A A IPV Sbjct: 61 DGTATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGS 120 Query: 114 DRQATKGE-VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172 + +K E ++I S++V G++ + KAG+ AKV+ L+G+ G SA +R EG Sbjct: 121 NTVVSKTELYDAYINSNDVEAGEMLAKAVIDKAGKDAKVVVLEGMLGQSAQVQRLEGINN 180 Query: 173 AVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG 230 + + +L A++ R + + +M+N LT+H D VQ V A+NDEMA+GA+ ++ G Sbjct: 181 VLKQNSGVTILEQNTANWSRAEAITLMENFLTSHGDQVQGVLAENDEMAVGAIEGIRNHG 240 Query: 231 --KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 + V G DG D +AV G+ +I Q ++ A L G+ + + Sbjct: 241 LDPKKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQGAIDLALSKLVGDTYKPR 297 >UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FY95_ACICJ Length = 329 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 126/261 (48%), Gaps = 4/261 (1%) Query: 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKI 85 TIALV +PF+++++ GA EA KLG +L+ S +P ++ +Q L + Sbjct: 36 KTIALVPGIATDPFYITMQHGAAAEAKKLGLHLIWQGGSSFSPETQIPALQALLAKHPAA 95 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV-SHIASDNVLGGKIAGDYIAKK 144 LL+ PT+ A+ N ++ A IPVI++D + ++ S I S+NV GG A IA Sbjct: 96 LLVAPTNEKALINPIRQFIAAGIPVISVDTTISDTAILKSRITSNNVQGGASAARAIAGF 155 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLT 203 A V + G S R +GF + + V+A + D K Q LL Sbjct: 156 AHGKGDVAVINVKPGISTTDARQKGFLAQMKHYKGMKVVAIEYDDDSPTKAFTEAQLLLL 215 Query: 204 AHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 +P ++ +FA N G +A+ AGK V VVG+D P K + G ++ I Q P Sbjct: 216 KYPHLKGIFATNVFSGEGVGKAVVAAGKKGKVDVVGYDAEPGEVKLLKQGVISTLIVQRP 275 Query: 263 DQIGAKGVETADKVLKGEKVQ 283 + G GV+ A +L G+ Q Sbjct: 276 AEEGRLGVKYAYDILTGKSAQ 296 >UniRef50_Q9K692 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K692_BACHD Length = 332 Score = 227 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 123/316 (38%), Gaps = 23/316 (7%) Query: 3 MKKLATLVSAVALSATVSANA---------------------MAKDTIALVVSTLNNPFF 41 MK+ V + + A + + L+ NN ++ Sbjct: 1 MKRHLFFVVGFMICISALATSIYSFVQVTRVETNVPSSTSISLPSSHFVLIAEEENNSYW 60 Query: 42 VSLKDGAQKEADKLGYNLVVLDSQ-NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAV 100 ++ GA++ ++ + + +NP ++L + +++ + + + Sbjct: 61 RLVEKGAREAENQFDVLVEYKAPKRSNPEEQLKLIDMAISAKVDGIIVQAVNEEMFTPLI 120 Query: 101 KMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGT 160 A A IPVIT+D A + V++I +DN G IAG + V + G + Sbjct: 121 NKAVDAGIPVITIDTDAPRSNRVAYIGTDNYYSGTIAGKAMLDDMEGDIHVAVITGSLES 180 Query: 161 SAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMA 219 S + R +GF ++ ++ + ++ R++ L+ HP + A + + Sbjct: 181 SHQKLRVQGFIDMISNEPRVTLVEVEASNISRLEAELKAHQLMEEHPHINAFYGTSALDG 240 Query: 220 LGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG 279 +G + A + G D+ V+ FD P+ + K+ A + Q P ++G K VE + +G Sbjct: 241 IGIVAAAEKLGLDDLYVIAFDTLPENLSLLEQEKIDAIVVQEPFEMGLKSVELLLDIREG 300 Query: 280 EKVQAKYPVDLKLVVK 295 + ++ K Sbjct: 301 QPYSMTNHTHTSIIRK 316 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 141/283 (49%), Gaps = 12/283 (4%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRG 82 ++ I ++V TL+NP++V++K+ + A ++G ++ V+ + + + +L ++ + + Sbjct: 48 GQERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKK 107 Query: 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV-------VSHIASDNVLGGK 135 +++ P D + + A++ IPV+ + ++ + I + G+ Sbjct: 108 YDGIIVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGLKQAGAVMDGWITATFKDQGR 167 Query: 136 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGL 195 + + +A+K G++V ++GI G ++ R EG + ++A + ++DR + Sbjct: 168 LCAEDMAEKLPSGSEVAIIEGIPGAGQSKARREGASEGFEKAGLKLVAVEAGNWDRNRAY 227 Query: 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLA 255 ++ NL+ AHP ++ ++ ND MAL A+ AL+ AG V V G D P+ +A+ G+LA Sbjct: 228 DITTNLVKAHPQLKGIYCANDVMALAAVDALEVAGIEGVTVYGTDFIPEAAEAIKSGRLA 287 Query: 256 A--TIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 T +Q G V T + K E + K V + LV + Sbjct: 288 GSTTFSQAAWTRGTL-VYTLKLIKKDEDLPEKLSVPITLVNGE 329 >UniRef50_C2DYY0 Periplasmic sugar-binding protein n=8 Tax=Lactobacillus jensenii RepID=C2DYY0_9LACO Length = 320 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 6/290 (2%) Query: 10 VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPA 69 + A ++ + + I + T+NN F+ L + +K D L++ D + Sbjct: 21 IVLCFYFAVLTQSQKKQKIIGVSYMTMNNSFYQVLNEEVEKRVDARADKLIIRDPALDAQ 80 Query: 70 KELANVQDLTVRGTKILLINPTDSDA--VGNAVKMANQANIPVITLDRQ-ATKGEVVSHI 126 K++ + D +G ++INP D + + + A++ I ++ +D Q A K V + + Sbjct: 81 KQVNQINDFIKKGVSAIIINPVDGNNNKLIAILNKAHKKRIKIVVVDSQMADKAHVDATL 140 Query: 127 ASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQP 186 SDN G + + KK + A ++ L+ +A +R GF + ++V+ Sbjct: 141 LSDNYQAGVLCAKALMKK-KKRANILLLEHY-SAMSANDRIRGFTDTLFNKNYHVVGKLN 198 Query: 187 ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGE 246 + L D + A ND+ A+GA+ AL + V V DG+ + + Sbjct: 199 TLGQSEYAYPAVLKRLKTQADFDTIMALNDQAAVGAIAALDSQKVKQVGVYSVDGSANMK 258 Query: 247 KAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 + + + + AT AQ P ++G + +L G+ V++K + + L+ K Sbjct: 259 QLLLNNQNATATAAQSPKEMGKLAFKLTYDLLAGKSVKSKIKLPVHLITK 308 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 9/278 (3%) Query: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKI 85 TI +V N F+ + DGAQK A+ G + S++ +++++ ++ Sbjct: 45 TIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETAISTNPDA 104 Query: 86 LLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 145 +++ PT +DA+ ++ A + IPVI +D A VS + SDN G+ + D +AK Sbjct: 105 IVLAPTVADALVPGIERAMDSGIPVIIIDSMANTDNYVSFLGSDNYTIGQRSADELAKAL 164 Query: 146 GEG-----AKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFDRIKGLNVM 198 E KV + ++G + R GF + V++ + A +N+ Sbjct: 165 EEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEAYPDIEVVSVRDAMGQVGNTINIT 224 Query: 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258 +LLTA+PD+ ++A N +RAL G++D+ V D + + +G L + + Sbjct: 225 LDLLTAYPDLDGLYANNQMTGDDMVRALDMQGRNDLAAVAVDASAQEIWGLENGYLDSVL 284 Query: 259 AQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 Q P +G GV A G + + ++ + Sbjct: 285 VQQPWVMGYAGVAYAVMARNGVPLAKNVDTGILVITPE 322 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 74/310 (23%), Positives = 143/310 (46%), Gaps = 15/310 (4%) Query: 1 MNMKK-LATLVSAVALSATVS--ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY 57 MN++K + + ++ +S +S A+A + +AL++ T + ++ G QKEA G Sbjct: 1 MNLRKSILSCLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAADGL 60 Query: 58 NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 117 + V + + ++ V+ + ++++ P DS A+ +++ +QA IP++ + Sbjct: 61 KVDVKVTNYDANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNSMP 120 Query: 118 TKG---EVVSHIASDNVLGGKIAGDYIA-----KKAGEGAKVIELQGIAGTSAARERGEG 169 + +++ G+ A + K G+ KVI + G GT +R +G Sbjct: 121 DQKYSRYWKVFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQRYQG 180 Query: 170 FQQAVAAH--KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227 F + + V+ +QPAD+D +K L T DV+ V+ +ND G + A Q Sbjct: 181 FVDGLKKNAPGIEVVGAQPADWDAVKAEAAASALFTQFKDVKGVYTENDSQLRGVVTAAQ 240 Query: 228 TAG--KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285 G S +++VG G +A++ GK AT+ Q P GA + A ++ G+ +A Sbjct: 241 RLGLEPSKLVIVGHGCDAGGVEAISAGKAYATVEQSPFDDGAYAAKAALELATGKTPRAV 300 Query: 286 YPVDLKLVVK 295 + + K Sbjct: 301 QYLPNPIATK 310 >UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridia RepID=A4XG54_CALS8 Length = 345 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 18/300 (6%) Query: 14 ALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-QNNPAKEL 72 A S K+ +V ++ G + AD G + + Q + +++ Sbjct: 35 ASSGNPKLKGSPKEEYYMVTFASGIEYWKGCFKGMKAAADLYGVKAIYTGAPQFDVNQQV 94 Query: 73 ANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVL 132 ++ + + +L+ + DA+ + A + IPVIT D + K S + + N Sbjct: 95 TVLRQVIAKKPAGILVTCANPDALKAPIDEAIKKGIPVITFDADSPKSLRYSVLETGNYN 154 Query: 133 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFNVLASQPADFD 190 G +A Y+ K G +V + +A +R +GF + V++ + D Sbjct: 155 AGAMAARYLGKLLGGKGEVG-ISTVAAQLNHEQRKQGFIDTLKKEFPGIKVVSIVNDEND 213 Query: 191 RIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDGTPDGEKAV 249 K + +L AHP+++ +F + +G A++ A K + +V FD + Sbjct: 214 STKAARGVAAMLQAHPNIKGIFCTDAPGGVGVATAIKEANKVGKIKIVSFDTDKGTLDLI 273 Query: 250 NDGKLAATIAQLPDQIGAKGVETADKVLKG-------------EKVQAKYPVDLKLVVKQ 296 G + A+IAQ +G G+ + G + +V KQ Sbjct: 274 KQGVIDASIAQGTWNMGFWGMTFLFYLKHGIVNPVDNWKKFGINPLPPYVDTGTMVVTKQ 333 >UniRef50_Q89VC4 ABC transporter sugar-binding protein n=3 Tax=Bradyrhizobium RepID=Q89VC4_BRAJA Length = 314 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 13/304 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG-YNLVV 61 M+KL L++ +A++ + A +V +NNPFF +DG K A +LG V Sbjct: 5 MRKL--LLAGIAVAMMATPAFAANYRFVIVPKAMNNPFFDFARDGCLKRAKELGNIECVY 62 Query: 62 LDS-QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 ++ PA + +QD + L I+ D A+ +++ A A IPVIT D A Sbjct: 63 KGPVEHEPATQAQIIQDFVTQKVDGLAISVADVAAMTKSIEAATAAGIPVITFDADAPGS 122 Query: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + +++I ++N G G + K +G K + G G ER +G ++A+ K+ Sbjct: 123 KRIAYIGTNNKEFGVALGKQLVKMRPDGGKYAMVSGGPGAKNLAERVDGVREALKGSKWT 182 Query: 181 VLASQP--ADFDRIKGLNVMQNLLTAHPDVQAV--FAQNDEMALGALRALQTAGKSDV-- 234 +A P + D + M ++ TA PD+ A+ A +A + K D+ Sbjct: 183 EVAGSPTFCNDDPALAVQQMTDMRTATPDLAAIVPIGGWPMFAPEGFKAFASRNKKDIDS 242 Query: 235 ---MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLK 291 +V D + + DG A + Q P ++G K ++T + KGEKV L Sbjct: 243 GKFTLVVADTLKMQLELLRDGYANALVGQRPFEMGEKAMDTLLAIKKGEKVPEIVYTGLD 302 Query: 292 LVVK 295 LV K Sbjct: 303 LVTK 306 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 143/297 (48%), Gaps = 13/297 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M K +VSAV+ +A S A T+ + + + + A+ EA+K G L + Sbjct: 1 MWKRLLIVSAVS-AAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA 59 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA---TK 119 D Q ++ V+ +G + I P + +K A A IPV LDR K Sbjct: 60 DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 119 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEG-AKVIELQGIAGTSAARERGEGFQQAVAAHK 178 ++ + +DN+L GK+ GD++ K+ V+ELQG G S A +R +GF +A+ Sbjct: 120 SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP 179 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTA---HPDVQAVFAQNDEMALGALRALQTAGK--- 231 ++ SQ DF R KG VM++ + A ++ V+A ND+M +GA++A++ AG Sbjct: 180 NIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPG 239 Query: 232 SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 D++ DG PD KA+ DG+ A++ P + + +K K + K + Sbjct: 240 KDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTL 295 >UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWB0_HERA2 Length = 332 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 77/314 (24%), Positives = 137/314 (43%), Gaps = 24/314 (7%) Query: 5 KLATLVSAVALSATVSANA-----------MAKD---TIALVVSTLNNPFFVSLKDGAQK 50 +L L+ V L+ +++A + + + + ++ Sbjct: 10 RLMALLVIVGLAGCGASSAPTTAPDAPATGAKTYSDMVLCYPQLGAESDWRTANTASIKE 69 Query: 51 EADKLGYN-LVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 109 A LG LV D+Q +++ V+ +G ++ + P D + A A IP Sbjct: 70 TAATLGIKQLVFSDAQQKQENQISAVRACIQQGVDVIALPPVVEDGWDAVLTEAKNAGIP 129 Query: 110 VITLDRQATKGE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERG 167 VI +DR + + +HI S+ VL G+ A K G ++EL G G+ AA R Sbjct: 130 VIIVDRSVSADKSLYSTHIGSNMVLEGERAAAEFNKMMPNGGAILELSGTTGSGAAVGRA 189 Query: 168 EGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAH---PDVQAVFAQNDEMALGALR 224 +G + + ++ SQ +F R + + VMQ LL + D Q +F ND+M +G + Sbjct: 190 KGLRNKL-NSNITIIDSQTGNFTRAEAVPVMQALLKKYTPGTDFQGIFIHNDDMGIGVIE 248 Query: 225 ALQTAG--KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 L+ AG D+ +V DGT G +A+ DG A + P +G + E A K++ G+ V Sbjct: 249 VLKAAGIKPGDLKIVSVDGTRGGFQAMVDGWFQADVECNP-LLGPQVFELALKLMNGQPV 307 Query: 283 QAKYPVDLKLVVKQ 296 + + + + + Sbjct: 308 EPEVITNETVYYPE 321 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 9/287 (3%) Query: 17 ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGY---NLVVLDSQNNPAKELA 73 AT A+ K TI V L N + L + + A++ +V S N K+++ Sbjct: 37 ATTRADPGGKFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQIS 96 Query: 74 NVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLG 133 NVQ + R +++ P A ++ AN+A IPVI + QA + + + +D+++ Sbjct: 97 NVQSMISRRVDAIIMTPISPSASVPVIQQANRAGIPVILVAGQADTRDTAAEVRADDIVF 156 Query: 134 GKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRI 192 G+ +++ ++ G K+ L G+ G S R +G + + V+A A +D Sbjct: 157 GRTGAEWLVRELGGRGKIYVLNGLPGFSTDTLRWKGAKDVFDRYPDIEVVADAHAAWDTA 216 Query: 193 KGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTP-----DGEK 247 + + N+L AHP+V V++Q M LGA++A + AGK V + G + D Sbjct: 217 RAKTAVSNMLAAHPEVDGVWSQGGAMTLGAIQAFRAAGKPLVPMTGENNNGLMKVWDSLN 276 Query: 248 AVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 D + + P +G++ + +L+G++V+ V+ + Sbjct: 277 RAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGDEVRKVNLVNPAPIT 323 >UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J484_9BACL Length = 329 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 134/293 (45%), Gaps = 6/293 (2%) Query: 8 TLVSAVALSATVSANAMAK--DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS- 64 L++ ++ + A + + ++V ++ + K GA+ A + L + Sbjct: 19 ALITLLSSCGGPGSGADHQQIYDVDMIVKMDRGDYWKTTKLGAEVAAKEFNVRLNFVAPE 78 Query: 65 -QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV 123 +N+ ++ +++ R +++ +D +A+G + +IPVI++D + +V Sbjct: 79 NENDVEGQIRLMEEAIERRPDAIILAASDYEALGQVTDRTSYYDIPVISMDSEVASTKVK 138 Query: 124 SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVL 182 + + ++N G+ A + + G +++ + + G A +R EGF VA +V+ Sbjct: 139 TFVGTNNYEAGQKAAERLVDLTGPVSEIGIINFVKGARNANQREEGFLDYVARFPDVHVV 198 Query: 183 ASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVVGFDG 241 Q D + ++L P++ + + + E ++GA RA+ G V ++ FD Sbjct: 199 DIQYCGSDEYLAYKLTADMLKRFPNLNGIVSLSAESSIGAGRAVDELGYGGKVKMIAFDN 258 Query: 242 TPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVV 294 P+ + + + K+ A + Q P G V A + +GEK++ + P D KL+ Sbjct: 259 PPEMLELLQEEKVQAMVVQNPFNNGYMAVAAAVQAARGEKLEDRIPTDTKLID 311 >UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=C6C3I7_DICDC Length = 311 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 3/290 (1%) Query: 1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60 M ++ + L +A+ + +++A+A K TI ++V++L+NP++ S GA K+A +LGY Sbjct: 1 MKLRSML-LTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTT 59 Query: 61 VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120 VL + K+ + + + ++++ DS A A+K A A IPV+ ++R+ Sbjct: 60 VLSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREIPVD 119 Query: 121 EVV-SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178 +V I +N G + +K GE K EL + R + F Q + + Sbjct: 120 DVALVQITHNNFQAGSDVANVFVEKMGEKGKYAELTCSLADNNCVTRSKSFHQVLDQYPG 179 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 +A Q A I G +M ++L AHPDV+ V N +ALGA+ AL+ AG++DV+VVG Sbjct: 180 MASIARQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAAGRNDVVVVG 239 Query: 239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 DG+ D AV +G L AT+ I A+GV D ++ AK V Sbjct: 240 IDGSNDERDAVKEGSLKATVMLQAQAIAAQGVTDLDNFIQKGAKPAKQRV 289 >UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YA80_DICT6 Length = 338 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 137/307 (44%), Gaps = 19/307 (6%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 M+K+ + + S + +A++ ++ +P++ ++ G ++ A LG Sbjct: 1 MRKILVAILIILFPLIFSIGYSKEIHVAVIGKSV-HPYWAEVELGVKQAAKDLGVKATFF 59 Query: 63 DSQ-NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121 Q + +++ ++ G + I P+D A+ ++ A IPVITLD A + + Sbjct: 60 VPQKEDIPAQISQMESFIAMGVDGIAIAPSDPTAIAPTIEKAMAKGIPVITLDTDAPQSK 119 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180 + +I +DN GKIAG + G +G KV G + ER GF +A++K Sbjct: 120 RLVYIGTDNYSAGKIAGMVMNDLLGIKGGKVAIGTGSLTAMNSLERIRGFMDGIASNKRI 179 Query: 181 VLASQPADFDRIK---GLNVMQNLLTAHPDVQ---AVFAQNDEMALGALRALQTAGKSDV 234 V+ ++PA D + + + L +PD++ V+A N A V Sbjct: 180 VVVTKPALCDFEDTGRAVTLAEQALLTYPDLRGFFGVYAFNGPAAA--KAVKAAGKVGQV 237 Query: 235 MVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKG------EKVQAK--Y 286 ++V FD T + + + +G ++AT+ Q P +G K VE K+ + +++ A Sbjct: 238 LIVCFDTTAEHMQLIKEGVISATVGQRPYMMGYKSVEVLTKMAQKGVDATLKELPANRII 297 Query: 287 PVDLKLV 293 + +V Sbjct: 298 DTGVDVV 304 >UniRef50_C0Z4C9 Putative ABC transporter substrate binding protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C9_BREBN Length = 328 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 142/299 (47%), Gaps = 9/299 (3%) Query: 7 ATLVSAVALSATVSAN-----AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 61 + AV L + SA+ K T+AL+V + ++ ++K GA+ A + NL Sbjct: 14 LVFLVAVTLFYSCSASLTDVVVDKKKTVALIVRMKHGDYWRTVKLGAEMAAKEYERNLNF 73 Query: 62 LDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119 + + +++ VQ G++ +++ P+D + A+K+ + IP++ LD Sbjct: 74 YAPDYEEDAQRQMELVQQAIADGSETIVVAPSDERVLREAIKLTRERAIPILVLDTVGND 133 Query: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHK 178 V S+I +DN G+ A + + + +++ L + A+ R +G + + Sbjct: 134 SAVKSYIGTDNYDMGRKAFEKMVYLIEKKGQIVLLGTDRIKANAKRREQGVLDLLPREMQ 193 Query: 179 FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG-KSDVMVV 237 ++A++ A D+ + + L+ HP ++ V A + A+G L+++G + V +V Sbjct: 194 VELVANENAPSDKKQIGEWTRELIRKHPQLKGVIALDSSTAIGVAEELESSGLRDKVKIV 253 Query: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 D P+ + + +G ++ATI Q P +G GV+ A + GE V + K++ ++ Sbjct: 254 AIDSPPEVLEYLQEGIISATIIQKPLSMGYLGVKYAVEASNGEAVPSLVDTGTKVIDRE 312 >UniRef50_A7NMH5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Roseiflexus RepID=A7NMH5_ROSCS Length = 372 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 136/340 (40%), Gaps = 48/340 (14%) Query: 1 MNMKKLATLVSAVALSATVSANAM-----------------------AKDTIALVVSTLN 37 M ++ A + L+ ++A K TI + ++ Sbjct: 1 MKRRQFALFAITLMLATLIAACGGTPTTTAPTAAPAPQPTTAPAPEGRKFTIGISNPFIS 60 Query: 38 NPFFVSLKDGAQKEADKL---GY--NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 + + + + + G LV+ + + A ++ +Q+L +G +L+NP+D Sbjct: 61 SEYRTQMIQSLIEVNKEYMERGITNELVIESADTDVAGQIQQLQNLINKGVDAILVNPSD 120 Query: 93 SDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVI 152 + + + ++ A I VI++D++ V ++ D KI+ ++A+K G ++ Sbjct: 121 VNGLNDTLQEAINKGIIVISVDQELNTPG-VYNVGIDQKEWAKISARWLAEKLGGQGNIV 179 Query: 153 ELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAV 211 ++G G A R EG ++ + + VL + +D G VM N L + P++ Sbjct: 180 LIEGFPGHPANVARMEGVEEVLKEYPNIKVLGRETGKWDEATGQQVMSNFLASFPNLDGY 239 Query: 212 FAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV-----NDGKLAATIAQLPDQIG 266 + Q D MA+GA++A+ A S V+ +G + D P + Sbjct: 240 WTQ-DGMAIGAMQAVMAANPSKWPVLVGEGRCQFLQLWDQRLKEDPNFETIAVANPPGVS 298 Query: 267 AKGVETADKVLKGEKVQA-----------KYPVDLKLVVK 295 G+ A +L+G++V PV + +V K Sbjct: 299 PTGLRIAINMLQGKQVDKSKLGGANGLSFVIPVPV-IVTK 337 >UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEL4_9BACT Length = 359 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 123/286 (43%), Gaps = 9/286 (3%) Query: 6 LATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 L +V + + + T S++ K I L + TL + +D A +LG + V + Sbjct: 18 LIGIVISRSHTGTDSSSPDHKLLIGLSMDTLQEARWQVDRDVFLARAKELGAEVSVASAN 77 Query: 66 NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSH 125 ++ + ++ +V + G +++I P D A+ V+ A+QA IPVI DR ++ + Sbjct: 78 SDDSTQIRDVNSMISAGVDVIVIIPHDGQAMSEGVRQAHQAGIPVIAYDRSIQDSDLDLY 137 Query: 126 IASDNVLGGKIAGDYIAKKA--GEGAKVIELQGIAGTSAARERGEGFQQAVAAH----KF 179 I DNV G+ Y+ +++ + G + A+ +G + + Sbjct: 138 ITFDNVKVGEAQAQYLIDHLPSPGKGRIVRIYGAPTDNNAKMFKQGQDNILQPYIDRGDI 197 Query: 180 NVLASQPA-DFDRIKGLNVMQNLLTAHP-DVQAVFAQNDEMALGALRALQTAGK-SDVMV 236 V+ A +++ + +T + D + A ND A GA++AL+ G S ++V Sbjct: 198 EVIHEDWAENWEPANAKKITNAAITNNGSDFHGILASNDGTAGGAIQALKEEGLVSKIIV 257 Query: 237 VGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV 282 G D + + DG TI + + + E A + G+ + Sbjct: 258 TGQDAEMAACQRIVDGSQIMTIYKPIKALASTAAELAVSMATGQPI 303 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 121/256 (47%), Gaps = 9/256 (3%) Query: 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTVRGTK 84 + I + + L P+ +S+ + EA K +V D+ + K+ ++ +L G Sbjct: 40 EYVIGMSQANLYEPWRISMNEEISNEAKKYKNIKIVYKDAGGDTNKQKKDIDELLNSGID 99 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 +L+++ DS+ + V A ++ +PV+ LDR +I DN G+ AG + Sbjct: 100 LLIVSINDSEKLTPVVSKAYKS-VPVVVLDRAVEGYNYSVYIGPDNEKIGREAGKMVVDL 158 Query: 145 AGE-GAKVIELQGIAGTSAARERGEGFQQAVAA-HKFNVLASQPADFDRIKGLNVMQNLL 202 G +VIE+QG+ + +R +GF++A+ ++ + ++ + + + ++ LL Sbjct: 159 LGNSEGRVIEIQGLLNSHPDIDRSKGFREAIKQCDNIKIVRTVIGEWQKDEAEDKIEELL 218 Query: 203 TAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT---PDGEKAVNDGKLAATIA 259 ++ +FA ND MALGA +A G +++ ++G DG G V+ G L T Sbjct: 219 KEDRNIDIIFAHNDYMALGAYKAAYKLGINNIKIIGVDGLTGENGGLDLVSRGILQGTFT 278 Query: 260 QLPDQIGAKGVETADK 275 G + V++A Sbjct: 279 CS--TGGKEAVDSALN 292 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 135/332 (40%), Gaps = 40/332 (12%) Query: 3 MKKLATLVSAVALSATVSANA------------MAKDTIALVVSTLNNPFFVSLKDGAQK 50 MKKL+ L+ L+ T+ + I + + ++ F ++ Sbjct: 1 MKKLSKLILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELAS 60 Query: 51 EADKLG------YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 104 ++G Y L + D + + A + + + +G +++ N D A G+ + A Sbjct: 61 YFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAK 120 Query: 105 QANIPVITLDRQATKGEV------VSHIASDNVLGGKIAGDYIAKKAGEGAKV------- 151 IPV+ ++R+ E+ +++ +D G I G Y+ + Sbjct: 121 AKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQG-YMIANLENKGDIDGDGSVS 179 Query: 152 -IELQGIAGTSAARERGEGFQQAVAAHKFN---VLASQPADFDRIKGLNVMQNLLTAHPD 207 I L G A++R E + + + A++D KG N L + Sbjct: 180 YITLMGDPANVDAKQRTEYSVKGLEEKGVKTNALAQPYQANWDTAKGQEFTANALEQFGN 239 Query: 208 -VQAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGTPDGEKAVNDGKLAATIAQLPD 263 ++ VFA ND MA+GA+ A++ AG+ D+ VVG D PD + + GKL T+ Sbjct: 240 KLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLKGGKLTGTVLNDHF 299 Query: 264 QIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295 V+ A ++L+G+ V A Y D V K Sbjct: 300 NQSHTAVDVALELLQGKDVSAYYWHDYVGVTK 331 >UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LY79_9FIRM Length = 342 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 132/295 (44%), Gaps = 22/295 (7%) Query: 15 LSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELAN 74 + + + K T+ + + + ++ A+ G L +++ ++ Sbjct: 30 VGSAEPGSGNRKITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRA 89 Query: 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA---TKGEVVSHIASDNV 131 ++ + I+ +P + +K A A IPVI +DR + I +D+V Sbjct: 90 IRSFIAQKVDIIAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTNDDSLYIMRIGTDSV 149 Query: 132 LGGKIAGDYIAKKAGEGAK----------VIELQGIAGTSAARERGEGFQQAVAAHK--- 178 G+ A ++ E K + E++G AG+S R GF+ A+ A Sbjct: 150 REGREAFRWLDGYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNKD 209 Query: 179 -FNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGKS---D 233 + +L +Q + F + G VM +L + D + +FAQND+MALGA+ A++ AG D Sbjct: 210 AYEILVAQNSTFQKDGGKQVMTEMLKNYKDKIDILFAQNDDMALGAIEAIEAAGLKPGQD 269 Query: 234 VMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288 +++V DGT +A+ DGK T+ P G +E A KVL GEKV+ V Sbjct: 270 IVIVSCDGTRAIFQAMIDGKSNCTVEGNP-LQGPLLMEMAKKVLAGEKVERTVFV 323 >UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Actinomycetales RepID=A6W806_KINRD Length = 362 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 130/274 (47%), Gaps = 4/274 (1%) Query: 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTK 84 K + + V +++ F + K+G A+ G L+ + + + + V G Sbjct: 50 KKLRVGVSVYDMSS-FITAGKEGMDAYAEAKGIELLWNSANLDVNTQASQVDQYVNAGVD 108 Query: 85 ILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKK 144 +++ P +D++ V A A IP++ ++ + ++ ++ D+V G+ +A Sbjct: 109 AIIVVPVQADSLQPQVASAKAAGIPLLAVNAELNSTDIAGNVQPDDVAAGEAQMQMMADA 168 Query: 145 AGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPADFDRIKGLNVMQNLLT 203 G ++ LQG G S R +G + +A + VLA A++ R + +N ++N ++ Sbjct: 169 IGGKGGIVVLQGPLGQSGELNRTKGIENVLAKYPDIEVLAKDTANWKRDEAVNKVKNWIS 228 Query: 204 AHP-DVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLP 262 A + V A+ND+M LGAL+AL+ +G + + VVG DG DG AV G+ T+ Q Sbjct: 229 AFGARITGVVAENDDMGLGALQALKESGVT-LPVVGIDGIEDGLNAVKSGEFIGTMLQNG 287 Query: 263 DQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296 + G+ A + GE V + + + K+ Sbjct: 288 TVELSAGLAVAAAIANGEDVNTEPVYKMPKITKE 321 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 126/287 (43%), Gaps = 11/287 (3%) Query: 12 AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ--NNPA 69 ++ +AT TIA++V NPF + +G K A+ +G+ ++L Q ++ Sbjct: 44 GLSWAATTDVKVNGDYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNE 103 Query: 70 KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASD 129 ++ V+D+ G + I+P DS+ + A++ A A IPV+ QA ++ + Sbjct: 104 DQVRLVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVLVQGTQANTDKIYGWYGTK 163 Query: 130 NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQPAD 188 + +Y+A+K V+ + G A + + N++ QP + Sbjct: 164 YADEATLIAEYLAEKLDYKGNVVYITGPQQAQNAIDEINATHAVFEKYPDLNLIEEQPGN 223 Query: 189 FDRIKGLNVMQNLLTAH--PDVQAVFAQNDEMALGALRALQTAGKS------DVMVVGFD 240 F+R ++VM+NL+ + D+ V NDE A+GA+ A++ AG + V G D Sbjct: 224 FNRATSMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDGGIGVSGID 283 Query: 241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYP 287 D A+ +G L ++ P +G G L + +Y Sbjct: 284 CNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYV 330 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 146/306 (47%), Gaps = 13/306 (4%) Query: 3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 MKK + ++ ++S +A I TLN FF L + + A + GY L+ Sbjct: 1 MKKRLIGLLLAGVTISMSVSAAEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLITT 60 Query: 63 DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT-KGE 121 D++ + K++A+V+D+ +G L++NP D A ++A +A +P + LD + Sbjct: 61 DARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIALEAP 120 Query: 122 VVSHIASDNVLGGKIAGDYIAKKAGEGA-KVIELQGIAGTSAARERGEGFQQAVAAH--- 177 V++ + ++N + G+Y + G+ I L G G + R + F VA Sbjct: 121 VITRVQANNAKNNNLIGEYAVGQFGDKPMNCIFLSGNQGNLVGQARRDNFLLGVAEAQLR 180 Query: 178 -----KFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAGK 231 N L+ ++D+ GL M++++ A D + V+++ D+MALGA+RAL+ A K Sbjct: 181 KYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGDKINCVYSEMDDMALGAIRALKAANK 240 Query: 232 -SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEK-VQAKYPVD 289 +V V DG G +AV G+L AT + PD + + +E + G+ + Sbjct: 241 LDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEVIGQYQAGQTSFPDYVYIP 300 Query: 290 LKLVVK 295 L+ K Sbjct: 301 SILITK 306 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.183 0.523 Lambda K H 0.267 0.0563 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,221,959,221 Number of Sequences: 3077464 Number of extensions: 125781145 Number of successful extensions: 372364 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 6039 Number of HSP's successfully gapped in prelim test: 5376 Number of HSP's that attempted gapping in prelim test: 337776 Number of HSP's gapped (non-prelim): 12570 length of query: 296 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 168 effective length of database: 646,480,964 effective search space: 108608801952 effective search space used: 108608801952 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 94 (40.4 bits)