Phyre 2 alignment of P77561 with c3cf1C_

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Job Description | P77561
Confidence | 67.56% | Date | Thu Jan 5 12:30:35 GMT 2012
Rank | 119 | Aligned Residues | 29
% Identity | 21% | Template | c3cf1C_
PDB info | PDB header:transport protein | Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; | PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
Resolution | 4.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 673 | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | V | V | F | M | S | A | K | Q | A | K | I | C | R | V | K | N | G | E | R | V | N | L | I | A | L | T | P | D | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | V | V | S | L | S | Q | P | K | M | D | E | L | Q | L | F | R | G | D | T | V | L | L | K | G | K | K | R | R | E
Template Known Secondary structure |  |  |  |  | B |  |  |  |  |  | G | G | G | T |  |  | T | T |  | B | B |  |  |  |  | T | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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