296 c1nijA_ Probab=98.39   E-value=3.5e-06  Score=55.04  Aligned_columns=145  Identities=19%

Q ss_pred             CCEEEEECCCCCCHHHHHHHHH----CCCCEEECCCCCEE-------EEEEEEEEEECC---------------------
Q ss_conf             6589997599789889999983----88721214788602-------525799999899---------------------
Q batch____         2 VPVVALVGRPNVGKSTLFNRLT----RTRDALVADFPGLT-------RDRKYGRAEIEG---------------------   49 (490)
Q Consensus         2 ~p~I~ivG~~nvGKStL~N~l~----~~~~a~v~~~~g~T-------rd~~~~~~~~~~---------------------   49 (490)
                      +|+..|.|-.++|||||+|+|+    +.+.+++.+..|.+       ++......+..+                     
T Consensus         3 ipv~iitGfLGaGKTTll~~ll~~~~~~~~avi~Nefg~~~iD~~ll~~~~~~v~~l~~GCiCC~~~~~~~~~l~~l~~~   82 (317)
T c1nijA_           3 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN   82 (317)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCEECCCHHHHHHHHHHHHHH
T ss_conf             61899808988898899999984269973899971664442058898407972999779954213247789999999984


Q ss_pred             -------EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHH--HHHHHHHHHHCCCCEEEEECC
Q ss_conf             -------89999976885667536889999999998866798999975898789889--999999997269847999985
Q batch____        50 -------REFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPAD--EAIAKHLRSREKPTFLVANKT  120 (490)
Q Consensus        50 -------~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~L~~~~~~~ilv~NKi  120 (490)
                             ....++.|.|+.+...-...-.........-..+.++.|||+.......+  ..+.+++....   ++++||+
T Consensus        83 ~~~~~~~~d~i~IE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vi~vvD~~~~~~~~~~~~~~~~Qi~~Ad---~ivlnk~  159 (317)
T c1nijA_          83 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD---RILLTKT  159 (317)
T ss_dssp             HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCS---EEEEECT
T ss_pred             HCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCC---EEEEECC
T ss_conf             1255468668998088757989999886308201130898017899740267776632255644531077---8996055


Q ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             58882355788872379957999851321
Q batch____       121 DGLDPDQAVVDFYSLGLGEIYPIAASHGR  149 (490)
Q Consensus       121 D~~~~~~~~~e~~~lg~~~~~~iSa~~g~  149 (490)
                      |.....+.+...-..-....--+.+.+|.
T Consensus       160 D~~~~~~~i~~~i~~lnP~a~i~~~~~g~  188 (317)
T c1nijA_         160 DVAGEAEKLHERLARINARAPVYTVTHGD  188 (317)
T ss_dssp             TTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             66898999999997408997799963054