BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (191 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AGB8 RNA polymerase sigma-E factor n=237 Tax=Proteoba... 389 e-107 UniRef50_Q47WN8 RNA polymerase sigma factor n=20 Tax=Gammaproteo... 276 3e-73 UniRef50_Q06198 RNA polymerase sigma-H factor n=265 Tax=cellular... 261 6e-69 UniRef50_Q2SL40 RNA polymerase sigma factor AlgU n=4 Tax=Proteob... 250 2e-65 UniRef50_A4BBJ0 RNA polymerase sigma factor n=1 Tax=Reinekea bla... 210 2e-53 UniRef50_A9BNK1 RNA polymerase sigma factor n=12 Tax=Proteobacte... 183 3e-45 UniRef50_A4GHT6 RNA polymerase sigma-70 factor n=1 Tax=unculture... 168 1e-40 UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma su... 137 2e-31 UniRef50_B7R6J3 RNA polymerase sigma factor, sigma-70 family n=5... 135 9e-31 UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily ... 134 2e-30 UniRef50_Q4PK18 RNA polymerase sigma factor n=1 Tax=uncultured b... 134 2e-30 UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacte... 131 1e-29 UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=... 129 7e-29 UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 126 3e-28 UniRef50_B1ZTI0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 125 6e-28 UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacet... 125 8e-28 UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2... 125 9e-28 UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 125 1e-27 UniRef50_C1ZDS5 RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=P... 124 2e-27 UniRef50_C6N7I6 RNA polymerase sigma E factor RpoE n=2 Tax=Legio... 124 2e-27 UniRef50_B5YDF0 RNA polymerase sigma-E factor n=2 Tax=Dictyoglom... 124 2e-27 UniRef50_C1SKR1 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 123 3e-27 UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily ... 122 6e-27 UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily ... 122 8e-27 UniRef50_A7HKZ1 RNA polymerase sigma factor n=1 Tax=Fervidobacte... 120 2e-26 UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1... 120 3e-26 UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily ... 119 7e-26 UniRef50_A3DDU5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 118 1e-25 UniRef50_Q67KY4 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 118 1e-25 UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=M... 118 1e-25 UniRef50_UPI00016939CD RNA polymerase ECF-type sigma factor n=1 ... 117 1e-25 UniRef50_A6GDP6 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 117 2e-25 UniRef50_B1I6K2 RNA polymerase sigma factor n=5 Tax=Clostridiale... 117 2e-25 UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 116 3e-25 UniRef50_A6C5N0 RNA polymerase sigma factor RpoE n=1 Tax=Plancto... 116 4e-25 UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 116 4e-25 UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 115 6e-25 UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 115 1e-24 UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured ma... 114 1e-24 UniRef50_Q5X4Y5 Sigma factor RpoE (Sigma 24) n=5 Tax=Legionella ... 114 2e-24 UniRef50_A6NW06 Putative uncharacterized protein n=1 Tax=Bactero... 114 2e-24 UniRef50_A9BGN8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 113 3e-24 UniRef50_Q0AVE0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 112 6e-24 UniRef50_Q01Z55 RNA polymerase, sigma-24 subunit, ECF subfamily ... 112 6e-24 UniRef50_A5V1V8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 112 1e-23 UniRef50_Q6MPU7 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 110 3e-23 UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter... 110 3e-23 UniRef50_B8I3Y9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 110 3e-23 UniRef50_A0LHW6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 110 4e-23 UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily ... 109 5e-23 UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=S... 109 6e-23 UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 108 7e-23 UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella the... 108 8e-23 UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF sub... 108 8e-23 UniRef50_Q2LQI1 Sigma factor n=1 Tax=Syntrophus aciditrophicus S... 108 9e-23 UniRef50_C8XA65 RNA polymerase, sigma-24 subunit, ECF subfamily ... 108 1e-22 UniRef50_C1AEN0 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 107 2e-22 UniRef50_A9G0E6 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 107 2e-22 UniRef50_D0LKU5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 107 3e-22 UniRef50_A1HLQ9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 106 3e-22 UniRef50_C5CIP4 RNA polymerase sigma factor n=1 Tax=Kosmotoga ol... 106 3e-22 UniRef50_B3DXV9 DNA-directed RNA polymerase specialized sigma su... 106 5e-22 UniRef50_D0LYF8 RNA polymerase sigma factor n=1 Tax=Haliangium o... 105 7e-22 UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacill... 104 1e-21 UniRef50_Q93RF4 Orf protein n=1 Tax=Treponema medium RepID=Q93RF... 104 1e-21 UniRef50_B4D0E9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 104 2e-21 UniRef50_Q1INR3 Sigma-24, ECF subfamily n=3 Tax=cellular organis... 104 2e-21 UniRef50_C0ZCF1 RNA polymerase ECF-type sigma factor n=3 Tax=cel... 103 2e-21 UniRef50_C6CUE1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 103 2e-21 UniRef50_C8PSN5 RNA polymerase sigma factor, sigma-70 family n=1... 103 3e-21 UniRef50_A2U163 RNA polymerase sigma factor n=1 Tax=Polaribacter... 103 3e-21 UniRef50_A6G087 RNA polymerase sigma-E factor n=1 Tax=Plesiocyst... 103 5e-21 UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex de... 102 9e-21 UniRef50_A4CQ62 RNA polymerase sigma-70 factor, ECF subfamily pr... 102 1e-20 UniRef50_Q01V29 RNA polymerase, sigma-24 subunit, ECF subfamily ... 102 1e-20 UniRef50_B3E7K8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 101 1e-20 UniRef50_A0LYR6 RNA polymerase sigma factor n=1 Tax=Gramella for... 101 1e-20 UniRef50_Q7WLV7 Putative RNA polymerase sigma factor n=2 Tax=Bor... 101 1e-20 UniRef50_D2QJ11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 101 2e-20 UniRef50_B7KDZ7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 100 2e-20 UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 100 3e-20 UniRef50_B7IH95 RNA polymerase sigma factor n=7 Tax=Thermotogace... 100 3e-20 UniRef50_B8I824 RNA polymerase, sigma-24 subunit, ECF subfamily ... 100 3e-20 UniRef50_Q5YXA9 Putative sigma factor n=1 Tax=Nocardia farcinica... 100 3e-20 UniRef50_C1YP86 RNA polymerase, sigma subunit, ECF family n=1 Ta... 100 4e-20 UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus ... 100 4e-20 UniRef50_C0QFM1 RNA polymerase sigma factor n=1 Tax=Desulfobacte... 100 4e-20 UniRef50_D2PPR8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 100 5e-20 UniRef50_B3QZ33 RNA polymerase, sigma-24 subunit, ECF subfamily ... 99 5e-20 UniRef50_Q8DM09 Group3 RNA polymerase sigma factor n=2 Tax=Cyano... 99 6e-20 UniRef50_C0Z9P5 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 99 7e-20 UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 99 8e-20 UniRef50_Q21I12 Sigma-70 region 2 n=1 Tax=Saccharophagus degrada... 99 8e-20 UniRef50_C7PJ26 RNA polymerase, sigma-24 subunit, ECF subfamily ... 99 9e-20 UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 98 1e-19 UniRef50_A4FAV7 Putative RNA polymerase sigma factor n=1 Tax=Sac... 98 1e-19 UniRef50_B2UN43 RNA polymerase, sigma-24 subunit, ECF subfamily ... 98 1e-19 UniRef50_A6LL38 RNA polymerase, sigma-24 subunit, ECF subfamily ... 98 2e-19 UniRef50_A4A074 RNA polymerase sigma factor, sigma-70 family pro... 98 2e-19 UniRef50_Q97E49 Specialized sigma subunit of RNA polymerase n=1 ... 97 2e-19 UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 97 2e-19 UniRef50_C4KZK8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 97 3e-19 UniRef50_B5VYK7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 97 3e-19 UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium El... 97 3e-19 UniRef50_A5GDM9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 97 3e-19 UniRef50_D2B9Q6 RNA polymerase sigma factor n=1 Tax=Streptospora... 97 3e-19 UniRef50_Q3APD6 RNA polymerase sigma factor n=10 Tax=Chlorobiace... 97 3e-19 UniRef50_C0ZBY3 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 97 3e-19 UniRef50_Q01NU7 RNA polymerase sigma factor n=1 Tax=Candidatus S... 97 4e-19 UniRef50_Q1D378 RNA polymerase sigma-70 factor, ECF subfamily n=... 97 4e-19 UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 97 4e-19 UniRef50_B1ZWV8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 97 4e-19 UniRef50_C1F7G4 RNA polymerase sigma factor n=1 Tax=Acidobacteri... 96 6e-19 UniRef50_Q0VMH1 Rna polymerase sigma-e factor (Sigma-24) n=2 Tax... 96 6e-19 UniRef50_A9G8Q1 ECF-family RNA polymerase sigma factor n=1 Tax=S... 96 6e-19 UniRef50_C1ZG18 RNA polymerase sigma factor, sigma-70 family n=1... 96 7e-19 UniRef50_A6GAU3 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 96 7e-19 UniRef50_A6C0F8 RNA polymerase sigma factor n=1 Tax=Planctomyces... 96 7e-19 UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrired... 96 8e-19 UniRef50_B3PJQ3 RNA polymerase sigma factor n=1 Tax=Cellvibrio j... 96 9e-19 UniRef50_C0XTG6 RNA polymerase sigma factor n=2 Tax=Corynebacter... 95 1e-18 UniRef50_Q1CYD9 RNA polymerase sigma-70 factor, ECF subfamily n=... 95 1e-18 UniRef50_B9XG21 RNA polymerase, sigma-24 subunit, ECF subfamily ... 95 1e-18 UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira R... 95 1e-18 UniRef50_Q73K99 RNA polymerase sigma-24 factor, putative n=1 Tax... 95 1e-18 UniRef50_C5D220 RNA polymerase, sigma-24 subunit, ECF subfamily ... 95 2e-18 UniRef50_A5FKW0 RNA polymerase sigma factor n=4 Tax=Flavobacteri... 95 2e-18 UniRef50_Q1IJV0 Sigma-24, ECF subfamily n=2 Tax=Acidobacteria Re... 95 2e-18 UniRef50_B8GD43 RNA polymerase, sigma-24 subunit, ECF subfamily ... 94 2e-18 UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus S... 94 2e-18 UniRef50_A5CQL0 RNA polymerase sigma factor n=4 Tax=Actinomyceta... 94 2e-18 UniRef50_C7RD23 RNA polymerase, sigma-24 subunit, ECF subfamily ... 94 2e-18 UniRef50_Q7NFE2 Glr3584 protein n=1 Tax=Gloeobacter violaceus Re... 94 2e-18 UniRef50_B4RD59 RNA polymerase sigma factor n=1 Tax=Phenylobacte... 94 2e-18 UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 94 2e-18 UniRef50_A0LD14 RNA polymerase sigma factor n=1 Tax=Magnetococcu... 94 2e-18 UniRef50_Q7UFL5 RNA polymerase sigma factor n=1 Tax=Rhodopirellu... 94 3e-18 UniRef50_D1CFG7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 94 3e-18 UniRef50_A6CI15 RNA polymerase sigma-70 factor n=3 Tax=Bacillace... 94 3e-18 UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobact... 94 3e-18 UniRef50_Q01Q68 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 94 4e-18 UniRef50_A6G4F0 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocysti... 93 4e-18 UniRef50_B9XQJ1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 93 4e-18 UniRef50_A8TRK4 Sigma-24, ECF subfamily protein n=1 Tax=alpha pr... 93 4e-18 UniRef50_Q2BEM6 RNA polymerase sigma factor n=1 Tax=Bacillus sp.... 93 5e-18 UniRef50_B4UK08 RNA polymerase sigma factor n=7 Tax=Cystobacteri... 92 6e-18 UniRef50_Q1AVA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 92 6e-18 UniRef50_C0WH96 RNA polymerase sigma factor n=3 Tax=Corynebacter... 92 6e-18 UniRef50_D1C360 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 92 7e-18 UniRef50_D0LTI3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 92 7e-18 UniRef50_A7HAL3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 92 8e-18 UniRef50_B8I5U3 RNA polymerase sigma factor n=3 Tax=Clostridiale... 92 8e-18 UniRef50_A6TSA9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus... 92 8e-18 UniRef50_C4RNN1 RNA polymerase sigma factor n=1 Tax=Micromonospo... 92 8e-18 UniRef50_B3EM30 RNA polymerase sigma factor n=8 Tax=Chlorobiacea... 92 8e-18 UniRef50_D0MJ41 RNA polymerase, sigma-24 subunit, ECF subfamily ... 92 8e-18 UniRef50_Q08NR7 RNA polymerase sigma-E factor n=1 Tax=Stigmatell... 92 9e-18 UniRef50_C0Z4C2 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 92 1e-17 UniRef50_D0LRW7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 92 1e-17 UniRef50_C8R1R3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 92 1e-17 UniRef50_Q1IS06 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 92 1e-17 UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacte... 92 1e-17 UniRef50_C0BMT3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 92 1e-17 UniRef50_A7BEQ0 Putative uncharacterized protein n=1 Tax=Actinom... 92 1e-17 UniRef50_B4WJK4 RNA polymerase sigma factor, sigma-70 family n=1... 92 1e-17 UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 91 1e-17 UniRef50_B9XQ34 RNA polymerase, sigma-24 subunit, ECF subfamily ... 91 2e-17 UniRef50_C1A5K6 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 91 2e-17 UniRef50_D2L6E5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 91 2e-17 UniRef50_C7ICT2 RNA polymerase sigma factor n=1 Tax=Clostridium ... 91 2e-17 UniRef50_D1CIE7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 91 2e-17 UniRef50_C0YUE0 ECF family DNA-directed RNA polymerase sigma sub... 91 3e-17 UniRef50_D1C1C9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 90 3e-17 UniRef50_D2QGU1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 90 3e-17 UniRef50_Q01QB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 90 4e-17 UniRef50_B9XK22 RNA polymerase, sigma-24 subunit, ECF subfamily ... 90 4e-17 UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 90 4e-17 UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 90 5e-17 UniRef50_Q01YV2 RNA polymerase sigma factor n=1 Tax=Candidatus S... 90 5e-17 UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 89 6e-17 UniRef50_D2QZ03 RNA polymerase, sigma-24 subunit, ECF subfamily ... 89 6e-17 UniRef50_A5GCL0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 89 7e-17 UniRef50_A0LQ54 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 89 7e-17 UniRef50_Q67K53 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 89 8e-17 UniRef50_B1HXE6 RNA polymerase sigma factor Y n=3 Tax=Bacillacea... 89 8e-17 UniRef50_Q2RYX7 Extracytoplasmic function alternative sigma fact... 89 9e-17 UniRef50_C6CXF0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 89 9e-17 UniRef50_A9I4N5 RNA polymerase sigma factor n=4 Tax=Bordetella R... 89 9e-17 UniRef50_UPI0001C317C9 RNA polymerase, sigma-24 subunit, ECF sub... 89 1e-16 UniRef50_Q04XI2 RNA polymerase sigma subunit n=4 Tax=Leptospira ... 89 1e-16 UniRef50_D2QW68 RNA polymerase, sigma-24 subunit, ECF subfamily ... 89 1e-16 UniRef50_Q1IQR2 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 89 1e-16 UniRef50_Q67KL8 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 88 1e-16 UniRef50_B8HG32 RNA polymerase, sigma-24 subunit, ECF subfamily ... 88 1e-16 UniRef50_UPI00018742C8 ECF-family sigma factor W n=1 Tax=Coryneb... 88 1e-16 UniRef50_B8FG58 RNA polymerase, sigma-24 subunit, ECF subfamily ... 88 1e-16 UniRef50_A6EDP4 Putative RNA polymerase sigma factor n=1 Tax=Ped... 88 2e-16 UniRef50_Q11XH8 RNA polymerase, sigma-E factor n=3 Tax=Sphingoba... 88 2e-16 UniRef50_Q47E65 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Dech... 88 2e-16 UniRef50_D2SF99 RNA polymerase, sigma-24 subunit, ECF subfamily ... 88 2e-16 UniRef50_C0N975 RNA polymerase sigma factor, sigma-70 family n=1... 88 2e-16 UniRef50_A6GQI2 Putative RNA polymerase sigma factor n=1 Tax=Lim... 88 2e-16 UniRef50_D0MDW1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 88 2e-16 UniRef50_C5RPF9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 87 2e-16 UniRef50_Q5L9L9 RNA polymerase sigma factor n=32 Tax=Bacteroidal... 87 2e-16 UniRef50_UPI00016C0B7C RNA polymerase ECF-type sigma factor n=1 ... 87 2e-16 UniRef50_Q1AXP8 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 87 2e-16 UniRef50_B8HB35 RNA polymerase, sigma-24 subunit, ECF subfamily ... 87 2e-16 UniRef50_C4LGI4 ECF-family sigma factor M n=1 Tax=Corynebacteriu... 87 2e-16 UniRef50_C0R1C6 R polymerase sigma-70 factor 2 n=2 Tax=Brachyspi... 87 2e-16 UniRef50_B8JDV3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 87 3e-16 UniRef50_B5JPG3 RNA polymerase sigma factor, sigma-70 family n=1... 87 3e-16 UniRef50_B0SUX1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 87 3e-16 UniRef50_A6W8E3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 87 3e-16 UniRef50_A4X831 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 87 3e-16 UniRef50_B1ZTW9 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 87 3e-16 UniRef50_A4ARC6 RNA polymerase sigma-70 factor n=2 Tax=unclassif... 87 3e-16 UniRef50_A6G472 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocysti... 87 3e-16 UniRef50_Q3B236 Sigma-24 (FecI-like) n=3 Tax=Chlorobiaceae RepID... 87 3e-16 UniRef50_Q11VU6 RNA polymerase sigma-24 factor n=3 Tax=Sphingoba... 87 3e-16 UniRef50_Q1PWR8 Similar to RNA polymerase sigma-70 factor, ECF s... 87 4e-16 UniRef50_C7Q7J1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 87 4e-16 UniRef50_C0ZGW3 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 87 4e-16 UniRef50_A6G694 Sigma factor AlgU n=1 Tax=Plesiocystis pacifica ... 87 4e-16 UniRef50_B0ME37 RNA polymerase sigma factor n=2 Tax=Anaerostipes... 87 4e-16 UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily ... 87 4e-16 UniRef50_B2IDE1 RNA polymerase sigma factor n=2 Tax=Rhizobiales ... 87 4e-16 UniRef50_A4CGT5 RNA polymerase sigma-70 factor n=1 Tax=Robiginit... 86 5e-16 UniRef50_A9GBY9 ECF-family RNA polymerase sigma factor n=1 Tax=S... 86 5e-16 UniRef50_C6PS15 RNA polymerase, sigma-24 subunit, ECF subfamily ... 86 5e-16 UniRef50_C6R3S7 Sigma-24 n=1 Tax=Rothia mucilaginosa ATCC 25296 ... 86 6e-16 UniRef50_A1ZJG6 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 86 7e-16 UniRef50_Q11IY6 RNA polymerase sigma factor n=8 Tax=Alphaproteob... 86 7e-16 UniRef50_Q127J2 Sigma-24 (FecI-like) n=6 Tax=Burkholderiales Rep... 86 7e-16 UniRef50_A7H7K8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 86 7e-16 UniRef50_A1ZQJ0 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 86 8e-16 UniRef50_P66808 RNA polymerase sigma-E factor n=73 Tax=Actinobac... 86 8e-16 UniRef50_B9M8T5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 86 9e-16 UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostri... 86 1e-15 UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistip... 86 1e-15 UniRef50_A0M2I0 RNA polymerase ECF-type sigma factor n=3 Tax=Fla... 85 1e-15 UniRef50_D1TN86 RNA polymerase sigma factor n=1 Tax=Burkholderia... 85 1e-15 UniRef50_C1ZMC3 RNA polymerase sigma factor n=3 Tax=Planctomycet... 85 1e-15 UniRef50_Q67JY6 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 85 1e-15 UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor... 85 2e-15 UniRef50_B1M4F7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 85 2e-15 UniRef50_Q1DAR4 RNA polymerase sigma-70 factor, ECF subfamily n=... 84 2e-15 UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 84 2e-15 UniRef50_C6X3F9 RNA polymerase sigma factor n=1 Tax=Flavobacteri... 84 2e-15 UniRef50_C1AC29 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 84 2e-15 >UniRef50_P0AGB8 RNA polymerase sigma-E factor n=237 Tax=Proteobacteria RepID=RPOE_ECO57 Length = 191 Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA Sbjct: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN Sbjct: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA Sbjct: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 Query: 181 IDNKVQPLIRR 191 IDNKVQPLIRR Sbjct: 181 IDNKVQPLIRR 191 >UniRef50_Q47WN8 RNA polymerase sigma factor n=20 Tax=Gammaproteobacteria RepID=Q47WN8_COLP3 Length = 208 Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 128/191 (67%), Positives = 166/191 (86%), Gaps = 1/191 (0%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 SE DQ LVERVQ+GD+ AFNLLV +YQHKVA+LVSRYV + DVPD+VQEAFIKAYRA Sbjct: 16 SEPNIDQQLVERVQRGDKNAFNLLVTKYQHKVANLVSRYVKNHSDVPDIVQEAFIKAYRA 75 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L +FRGDSAFYTWLYRIAVN AKN+ VA GR+PPS+DV+ +AE +++G AL+E ++PE Sbjct: 76 LPNFRGDSAFYTWLYRIAVNCAKNHSVALGRKPPSNDVEISDAELYDTGDALRENASPEK 135 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++L+ E+++++F T+ESLP+DLR+AI RE++GLSYEEIA IM+CPVGTVRSRIFRAR+A Sbjct: 136 ILLTAEIKKVIFSTMESLPDDLRLAINFREIEGLSYEEIATIMECPVGTVRSRIFRARDA 195 Query: 181 IDNKVQPLIRR 191 ID K++PL+++ Sbjct: 196 IDKKIRPLLQK 206 >UniRef50_Q06198 RNA polymerase sigma-H factor n=265 Tax=cellular organisms RepID=RPSH_PSEAE Length = 193 Score = 261 bits (668), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 153/191 (80%), Gaps = 1/191 (0%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 M Q DQ LVERVQ+GD++AF+LLV++YQHK+ L+ R+V + DV QEAFIKAYR Sbjct: 1 MLTQEQDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDAQEAQDVAQEAFIKAYR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FRGDSAFYTWLYRIA+NTAKN+LVA+GRRPP SDV A +AE FE ALK+I +PE Sbjct: 61 ALGNFRGDSAFYTWLYRIAINTAKNHLVARGRRPPDSDVTAEDAEFFEGDHALKDIESPE 120 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ML +E+ V +TI+ LPEDLR A+TLRE +GLSYE+IA +M CPVGTVRSRIFRARE Sbjct: 121 RAMLRDEIEATVHQTIQQLPEDLRTALTLREFEGLSYEDIATVMQCPVGTVRSRIFRARE 180 Query: 180 AIDNKVQPLIR 190 AID +QPL+R Sbjct: 181 AIDKALQPLLR 191 >UniRef50_Q2SL40 RNA polymerase sigma factor AlgU n=4 Tax=Proteobacteria RepID=Q2SL40_HAHCH Length = 222 Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 115/187 (61%), Positives = 154/187 (82%), Gaps = 1/187 (0%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALD 62 + TDQ LVERVQ+GD++AF++LVV+YQ KV ++++RY+ +V DV QEAFIKAY+AL Sbjct: 30 KTTDQQLVERVQRGDKRAFDMLVVKYQSKVMAIIARYIRDHHEVMDVAQEAFIKAYKALA 89 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +FRG+SAFYTWLYRIA+N AKN+L+AQGRRPP DVDA +A +E G ALK+I +PE + Sbjct: 90 NFRGESAFYTWLYRIAINAAKNHLMAQGRRPPGEDVDADDAVLYEGGSALKDIDSPERQV 149 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 ++++Q +F+ ++ LPEDLR A+TLRE DGLSYEEIA IM CPVGTVRSRIFRAR+A+D Sbjct: 150 HRDQVKQAIFQALDELPEDLRSALTLREFDGLSYEEIAEIMQCPVGTVRSRIFRARDAVD 209 Query: 183 NKVQPLI 189 ++ P++ Sbjct: 210 ARIAPML 216 >UniRef50_A4BBJ0 RNA polymerase sigma factor n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ0_9GAMM Length = 203 Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 102/184 (55%), Positives = 136/184 (73%), Gaps = 1/184 (0%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 DQ+LV++ QKGD +AF+LLV++YQHKVAS+VSR V D + D+VQEAF+KAYRAL FR Sbjct: 8 DQLLVQKAQKGDSRAFDLLVLKYQHKVASVVSRLVNEPDTIEDIVQEAFVKAYRALPGFR 67 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 GDSAF+TWLYRIA NTAKN+L RRP D E +S +L+E P+ L+ Sbjct: 68 GDSAFFTWLYRIATNTAKNHLETLSRRPSYRGQDIDEVTLVDSPASLREFDTPDGLLARG 127 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +L Q + T+ LPEDLR+A+TLRE +G+SY+EI+ IM+ P+GTVRSRIFRARE I+ ++ Sbjct: 128 QLEQRLQSTLSELPEDLRVALTLREFEGMSYQEISTIMETPIGTVRSRIFRAREIIEREL 187 Query: 186 QPLI 189 ++ Sbjct: 188 HSVM 191 >UniRef50_A9BNK1 RNA polymerase sigma factor n=12 Tax=Proteobacteria RepID=A9BNK1_DELAS Length = 223 Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/191 (49%), Positives = 128/191 (67%), Gaps = 5/191 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +D LVER GD +AF LLV++YQ ++ L+ R V D VPD+ QE FI+AYRAL F Sbjct: 27 SDLALVERTNAGDMRAFELLVIKYQRRIERLIGRMVRDVDLVPDIAQETFIRAYRALHQF 86 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN---- 120 RGD+ FYTWLYRIAVNTAK L+ R P ++ ++ + + + E Sbjct: 87 RGDAQFYTWLYRIAVNTAKKALLDMKRSPLITESALHNGDDDDETSRVSQELTTEETPET 146 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ ++E+ Q V +E+LPEDLR A+TLRE++GLSYEEI+ M CP+GTVRSRIFRAREA Sbjct: 147 ILAAQEIAQAVNAAMEALPEDLRQAVTLREIEGLSYEEISNAMGCPIGTVRSRIFRAREA 206 Query: 181 IDNKVQPLIRR 191 I +V+PL+ R Sbjct: 207 ISARVKPLLER 217 >UniRef50_A4GHT6 RNA polymerase sigma-70 factor n=1 Tax=uncultured marine bacterium EB0_39H12 RepID=A4GHT6_9BACT Length = 211 Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/186 (43%), Positives = 128/186 (68%), Gaps = 11/186 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFR 65 D LV RV+ GD +AF+LLV++YQ ++ S ++ + D+VQ++FIKA+++++SFR Sbjct: 18 DLALVRRVKAGDYRAFDLLVIKYQSRLVSTALKFSKDLQIAEDIVQDSFIKAFKSINSFR 77 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK----EISNPENL 121 DSAFYTW+YRI VNTAKN+LV++ R+ + A + G+L+ E P+ + Sbjct: 78 EDSAFYTWVYRITVNTAKNFLVSKKRKGE------LLATDISDDGSLEIDSLETDTPDGI 131 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + EL++I+ ++ L E+ + A+TLRE +GLSYE+I+ I++CPVGTVRSRIFR RE + Sbjct: 132 LKANELKEILLDSLNRLGEETKTALTLREFEGLSYEQISKIVNCPVGTVRSRIFRGREVL 191 Query: 182 DNKVQP 187 + ++ Sbjct: 192 EETIKK 197 >UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=3 Tax=Peptococcaceae RepID=A5D0C6_PELTS Length = 204 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/193 (37%), Positives = 118/193 (61%), Gaps = 20/193 (10%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D++LVER Q GD +AF +LV RY++KV ++ R++ + D D+ QEAF++ Y+AL FR Sbjct: 5 DEILVERSQNGDLEAFEMLVRRYENKVYTVAYRFLGNHADASDLAQEAFLRLYQALPRFR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-------- 117 G+S+F TWLYRI N ++ L RR + +++ EN L+ I N Sbjct: 65 GESSFMTWLYRITANACRDEL----RRRQRNSTVSLDGEN-----GLEHIQNYSLFSGYI 115 Query: 118 --PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 PE+ + +EL ++V + S+ + R+ + +RE+ G++Y+EI+A+M+C +GTV+SR+ Sbjct: 116 PSPEDTVEKKELNELVQMCLNSISGEHRLILVMREIQGMTYDEISAVMNCSLGTVKSRLS 175 Query: 176 RAREAIDNKVQPL 188 RAR A K L Sbjct: 176 RARRAFREKFNGL 188 >UniRef50_B7R6J3 RNA polymerase sigma factor, sigma-70 family n=5 Tax=Thermoanaerobacterales RepID=B7R6J3_9THEO Length = 191 Score = 135 bits (339), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 116/180 (64%), Gaps = 7/180 (3%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 L+ER + GD +AF+LL+ Y+ V +++ R V + D+ QE FIKAY ++ +FR DS Sbjct: 6 LLERARNGDDEAFSLLIENYEKYVYNVILRIVEEKEEAKDIAQETFIKAYMSIKTFRKDS 65 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 +F TW+YRIAVNTA +YL R+ S+V+ + A E +K PE ++ + Sbjct: 66 SFRTWIYRIAVNTAMDYL----RKKVRSEVNLVTAA--EDELEIKSFQTPEEVIEQKLTV 119 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 ++V R I LP D ++A+ LR+++G++YEEIA+I+ +GTV+SRI+RAR + +++ L Sbjct: 120 EMVRREISKLPVDYKIALILRDIEGMNYEEIASILKVNLGTVKSRIWRARNLLRERIKSL 179 >UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B9XS45_9BACT Length = 216 Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 112/181 (61%), Gaps = 5/181 (2%) Query: 5 LTDQV-LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 LTD++ LVER + GD A++ LV RYQ ++ + V + D D+ QE+FIKA++AL Sbjct: 28 LTDEMQLVERARNGDMAAYDDLVRRYQERIYATVYHMTSNHEDANDLAQESFIKAFQALK 87 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS--DVDAIEAENFESGGALKEISNPEN 120 SF+G S+FYTW+YRIAVN N+L + R S D+D AE+ AL P Sbjct: 88 SFKGGSSFYTWIYRIAVNKTINFLKQRKNRAQMSLNDLD-FNAEHDPDLVALISDKTPRR 146 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + EL++ + + L E R+ +TL ++ GLS+EEIA IMDC +GTVRSR+F AR+ Sbjct: 147 DIGLSELQEKLNAALLKLSEHHRLVVTLHDVQGLSHEEIAKIMDCNIGTVRSRLFYARQQ 206 Query: 181 I 181 + Sbjct: 207 L 207 >UniRef50_Q4PK18 RNA polymerase sigma factor n=1 Tax=uncultured bacterium MedeBAC49C08 RepID=Q4PK18_9BACT Length = 163 Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/137 (49%), Positives = 96/137 (70%), Gaps = 7/137 (5%) Query: 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPP--SSDVDAIEAEN 105 D+ QEAFIKAY + F+ DSAF+TWLYRIAVNTAKN+L ++ + S++D EN Sbjct: 16 DIAQEAFIKAYINIGGFKEDSAFFTWLYRIAVNTAKNHLSSKYNKNEIIESEID----EN 71 Query: 106 FESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDC 165 + + S PE+++ + LR +F+ + +PE+++ AITLRE +GL+YEEIA I +C Sbjct: 72 ILTQIGIDSPS-PESILEANTLRDRLFQCLNDMPEEIKSAITLREFNGLNYEEIAKICNC 130 Query: 166 PVGTVRSRIFRAREAID 182 PVGTVRSRIFR R+ +D Sbjct: 131 PVGTVRSRIFRGRQLLD 147 >UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacterineae RepID=Q1CXJ7_MYXXD Length = 211 Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/190 (41%), Positives = 109/190 (57%), Gaps = 13/190 (6%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKV-ASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 D LV+RV+ GDQ+AF LLV RYQ KV A + + DV QEAF+K Y+ LD F+ Sbjct: 12 DLTLVKRVRTGDQRAFKLLVERYQRKVYAVALGMLKDKEEAMDVSQEAFVKVYKYLDHFK 71 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQG------RRPPSSDVDAIEAENFESGGALKEISNPE 119 GDS+FYTWLYRI VN + + +G S VD EA G L +NP+ Sbjct: 72 GDSSFYTWLYRITVNICIDVIRKRGGGGEVVEFDESQSVDLSEARIGALGSRLG--TNPQ 129 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L EL + + + ++PE R + LRE++G+SY+++A +D P GTV SR+F AR Sbjct: 130 KSALRRELAEKIQEALATVPEKHRAILLLREIEGMSYDDLARTLDIPKGTVMSRLFHAR- 188 Query: 180 AIDNKVQPLI 189 KVQ ++ Sbjct: 189 ---AKVQKIL 195 >UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017466F3 Length = 202 Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/188 (40%), Positives = 111/188 (59%), Gaps = 8/188 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D LV R Q GD +AF+ LV RY+ KV + V + D D+ QEAFIKA+RAL SF Sbjct: 14 ADSDLVRRAQAGDARAFDSLVTRYRGKVYGMCYHLVQNEQDAWDLAQEAFIKAWRALPSF 73 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL--KEISNPENLM 122 +GD++FYTW+YRIA N+ ++L + + + + D +G K P+ + Sbjct: 74 KGDASFYTWIYRIAHNSTYDWLRKR-KIEGAGEFDDERQAGVAAGAETVPKGEHRPDEAL 132 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + EL + + I+ L D R AI LRE++G SYEEIA IM+ +GTV SR+F AR+ Sbjct: 133 KNRELGTRIQQAIDQLSPDHRTAILLREVEGFSYEEIAQIMESSMGTVMSRLFYARK--- 189 Query: 183 NKVQPLIR 190 K+Q L++ Sbjct: 190 -KLQELLK 196 >UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Planctomycetaceae RepID=D2R1D3_9PLAN Length = 189 Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 108/184 (58%), Gaps = 6/184 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKV-ASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 D+ LV+ V G+ +AF LLV RYQ ++ ++V + DVVQEA ++AY L SF+ Sbjct: 5 DKHLVKLVLSGETEAFGLLVARYQDRLFTAMVHVARSRSEAEDVVQEAMVQAYTKLASFQ 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 +S+FYTWLYRIA N A + + R P +S ++ E + P ML Sbjct: 65 AESSFYTWLYRIAFNQAMT--IRRKREPLTSIDESRYGSQHEPVATSTAVDGP---MLQS 119 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E +V R I +L ++ R + +RE+DG YE+I+ I+D PVGTVRSR+ RAR + +++ Sbjct: 120 EQAALVHRAIATLADEFRTVLVMREIDGFDYEQISQILDLPVGTVRSRLHRARLQLRDQL 179 Query: 186 QPLI 189 + L+ Sbjct: 180 KQLL 183 >UniRef50_B1ZTI0 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Verrucomicrobia RepID=B1ZTI0_OPITP Length = 211 Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 5/190 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D +V +VQ G+ F+ LV +Y+ ++ ++ + D D+ Q+AFIKA+++++ F Sbjct: 23 SDLAIVRQVQAGEVAQFDQLVTKYRARLYGVIYHLTSNREDAADLTQDAFIKAFQSINRF 82 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN---FESGGALKEISNPENL 121 +G S+F+TWLYRIAVN+ +L Q R S + I+ E+ E AL + + + Sbjct: 83 QGQSSFFTWLYRIAVNSTLTHLRKQRLRTFFS-FEKIDEEDDVAKEVVAALTDATGADRE 141 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + EL++ + ++ L R ITL E+DGLS++EIA +MDC VGTVRSR+ A++ + Sbjct: 142 TFAHELQEKLNEAMQKLSIKHRTVITLFEIDGLSHQEIAEVMDCSVGTVRSRLHYAKQLL 201 Query: 182 DNKVQPLIRR 191 +++Q IRR Sbjct: 202 QSELQSYIRR 211 >UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHE6_MOOTA Length = 204 Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 11/180 (6%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 +D+ L+ R + GD +AF LLV RYQ + ++ R++ + D D QEA ++A++ L +F Sbjct: 3 SDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLAAF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-----NPE 119 RG +F TWL I N ++ L RRP S +D + E+GG +E+S +PE Sbjct: 63 RGQCSFKTWLQHIIANVCRDELRRLKRRPTLS-LDNL----LETGGGFRELSAGKVTSPE 117 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + L+ E + R I++L + R+ + +R+L G SYEEIA+ + CPVGTV+SR+ RAR Sbjct: 118 EVFLTREGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASHLGCPVGTVKSRLSRARH 177 >UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ1_DESAH Length = 190 Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + D L++R Q+GD AF LV +Y+H+V ++ R++ D DV Q+ F+ Y++L S Sbjct: 1 MKDNDLLQRFQRGDADAFTQLVDQYKHRVTNICYRFLSDREDARDVTQDVFMAVYKSLGS 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 FR ++ TW+YRIAV + N++ + R+ V + E+G ++ PE + Sbjct: 61 FRQEAKLSTWVYRIAVTRSLNFVKKRKRKARFEQVRDMLTFKEEAGLESASVTTPEKELE 120 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +E Q++ + ++SLP++ ++A TL + DG+ Y EIAAIMD + +V S IFRAR+ + Sbjct: 121 QQEEFQVLQQALDSLPKNQKIAFTLSQYDGVKYAEIAAIMDTTISSVESLIFRARKNLQK 180 Query: 184 KV 185 K+ Sbjct: 181 KL 182 >UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67R63_SYMTH Length = 208 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 115/190 (60%), Gaps = 3/190 (1%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS+ L D++LVER ++GD +AF L+ +++ V ++ R + D D+ QEAFI+AY Sbjct: 1 MSKSL-DELLVERAKRGDVEAFEQLISQHEKTVYNIAYRLTGNHEDASDLAQEAFIRAYS 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-P 118 +L FRGDS+F TWLYRI N + L + R+ + A+E E+ E + + ++ P Sbjct: 60 SLADFRGDSSFATWLYRIVNNVCLDELRRRKRQKVTYLDQAVEMEDGEVSRQIADTADGP 119 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E + EL++++ +I L E+ R+ + +REL G SY EIA +D +GTV+SR+ RAR Sbjct: 120 EQALERVELQRLIQESILQLDEEYRVVLVMRELQGYSYNEIAEALDLNLGTVKSRLNRAR 179 Query: 179 EAIDNKVQPL 188 A+ K L Sbjct: 180 SALKEKFMSL 189 >UniRef50_C1ZDS5 RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDS5_PLALI Length = 193 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 117/190 (61%), Gaps = 10/190 (5%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 LTD+ L++ Q G + F LLV RY+ ++ ++R S D D+ QEAF +A+RA+ Sbjct: 4 LTDEELIQAAQTGHTEGFTLLVRRYEQRLFRSMTRISGSPEDAEDICQEAFTRAWRAISK 63 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE---AENFESGGALKEISNPEN 120 FRG+S FY+W++RIA+N ++ ++ + S +DA+ ++ E A ++ + Sbjct: 64 FRGESQFYSWVFRIALNLLRS---SKRQLKASVSLDAVRDAIGDDLEDQRA--DVDPSHS 118 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L + ++ R +V ++++ E R + L +L+ +SYEEIA ++DCPVGTVRSRI RAR+ Sbjct: 119 LQVRDQQR-VVQEAMDAMEESFRTVLVLTDLEEMSYEEIARVVDCPVGTVRSRIHRARQE 177 Query: 181 IDNKVQPLIR 190 +++ L+R Sbjct: 178 FRGRMERLLR 187 >UniRef50_C6N7I6 RNA polymerase sigma E factor RpoE n=2 Tax=Legionella RepID=C6N7I6_9GAMM Length = 220 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 8/177 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 +D+ LV Q+G++ A+NLL+ RY +K+ ++ ++ V D+VQE +K YR L F Sbjct: 43 SDEDLVNLAQQGNRNAYNLLLARYNNKIQQIIYFHINDQAYVNDLVQEVLLKVYRYLHYF 102 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + S F TWLYRI NT KN+ + R +VD ++ + + + PE +++S Sbjct: 103 KEKSQFSTWLYRITHNTIKNHYRSMSIRM-GREVDFVDTQEHSTHQS------PEYVLIS 155 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E + + I L +DLR+ + DG +YE IA MDCP+GTVRSRIFRAR+ + Sbjct: 156 IEFGEQLELAISRLSDDLRICYGMHIFDGQTYENIAKKMDCPIGTVRSRIFRARKLL 212 >UniRef50_B5YDF0 RNA polymerase sigma-E factor n=2 Tax=Dictyoglomus RepID=B5YDF0_DICT6 Length = 223 Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 118/180 (65%), Gaps = 9/180 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDV---VQEAFIKAYRA 60 + +DQ L+ ++ GD++AFN+LV RY+ KV +++ Y+ G++PD+ QE FIK ++ Sbjct: 32 KFSDQSLISLIKNGDKEAFNILVKRYEKKVLNIL--YLQLGNIPDLEDLAQEVFIKVFKN 89 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSD--VDAIEAENFESGGALKEISNP 118 L+ FRG++ F TW+YRI +N A +Y + + S D + E + FE + E +P Sbjct: 90 LNRFRGEAKFSTWIYRITINVAHDY-KRKFKESYSLDEPIGEDEEDTFEKVISSDE-EDP 147 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 +++ E++++ + + I+ LP++ + + LRE +GLSYEEI+ I+ CP+GTV SR++RAR Sbjct: 148 LSIVEKEDIKKKLHKLIKELPKEYQEVLILREYEGLSYEEISEILRCPIGTVESRLYRAR 207 >UniRef50_C1SKR1 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR1_9BACT Length = 191 Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 114/182 (62%), Gaps = 5/182 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDS 63 + D ++E+V GD + F +L+++YQ ++ + + V ++ D+ QEA++K + L++ Sbjct: 1 MKDSAIIEKVLSGDAQQFEMLILKYQSRLFATILNVVKHRELAEDITQEAYMKGFDKLET 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + FY WL RIA+N A N+ + +R + + E FE + + +PE L++ Sbjct: 61 LKNREQFYPWLKRIALNLALNHF-ERAKRVMDVENEDDETSFFER---IPDGESPEELVV 116 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EEL++ V +E+LP+ LR+ + LRE++ +SY+EIA +M+ P+GTVRSR+F AR+ I + Sbjct: 117 KEELKRYVRHFVEALPDKLRVVVVLREMEDMSYDEIADLMNIPIGTVRSRLFNARQIIKD 176 Query: 184 KV 185 ++ Sbjct: 177 RL 178 >UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW59_9BACT Length = 213 Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 106/187 (56%), Gaps = 7/187 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D LV R Q GD AFN LV+RY+++ +++ V + D D+ Q+ F+KA+++++ FR Sbjct: 25 DLELVARSQAGDTSAFNELVIRYRNRAYAMIYNMVRNEQDAWDLAQDGFLKAWKSINRFR 84 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL--KEISNPENLML 123 G S+FYTWLYRI +N A + L + D I N G A K P + Sbjct: 85 GQSSFYTWLYRILMNVAIDSLRKKQIEGGQEFDDQIGLHNIAPGAATAPKSEMEPAERIS 144 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +E+RQ + I L + R AI +RE+DGL Y EIA M C +GTV SR+F AR+ Sbjct: 145 DKEIRQRIDEAIAKLSPEHRTAIVMREIDGLEYTEIAEQMGCSLGTVMSRLFYARK---- 200 Query: 184 KVQPLIR 190 K+Q L++ Sbjct: 201 KLQALLK 207 >UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A648_NATTJ Length = 206 Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 106/178 (59%), Gaps = 2/178 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 D+ LV++ Q G AF LV +Y KV SL R+ + D D+ QEAFI+ Y +++ F Sbjct: 7 NDEFLVKQCQNGHLDAFEELVHKYHQKVYSLCYRFSGNHDDANDLAQEAFIRVYHSINKF 66 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLML 123 SAF TWLYR+ N + + + R+ S +E ++ E L + NPE + Sbjct: 67 HFKSAFSTWLYRVTSNVCLDEMRKRKRKSSVSLDSPMETDDGELYFNLPDQKFNPELMAE 126 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +++++IV + I+ LP+D ++ + LRE++G SY+E+A +M+ VGTV+SR+ RAR + Sbjct: 127 RKDVQEIVHKAIQELPKDQKLTLLLREMEGFSYDEMAEVMNVSVGTVKSRLSRARNNL 184 >UniRef50_A7HKZ1 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKZ1_FERNB Length = 206 Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 9/179 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRG 66 +Q LV+ + KGD++A+ L Y K+ +LV Y+ S D+ DVVQE F++ Y+ + FRG Sbjct: 22 EQRLVKALAKGDEEAYKYLYRNYASKIGALVKSYLGSDDIDDVVQEVFLRIYKNVKKFRG 81 Query: 67 DSAFYTWLYRIAVNTAKN-YLVAQGRRPPSSDVDAIEAENFESGGALKE--ISNPENLML 123 +S TW+YRIA+N N Y +GR P + ++ E++ + E N N ++ Sbjct: 82 ESKLSTWIYRIAINVCNNMYRKMKGRGPVVDLTEPMDDEDYTFQFSTDEDVQKNVTNDIM 141 Query: 124 SEELRQIVFRTIESL-PEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E+LR+I +E+L PED R + ++E+DGL+YEE+ I+D P GT++SR+ ++ I Sbjct: 142 YEKLRKI----LENLSPED-RAILFMKEIDGLTYEEVGKILDKPEGTIKSRLHYIKQTI 195 >UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFY7_9BACT Length = 191 Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 9/186 (4%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGD 67 LV + ++G Q AFN LV + KV R S D DV Q A+IK ++ L SFRGD Sbjct: 9 TLVFQAKEGSQTAFNQLVTLHYDKVYGQALRMTRSEEDAKDVAQLAWIKVWKKLSSFRGD 68 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE--ISNPENL--ML 123 SAF +W+YRI TA + + R+ SS A EAE E+ I++P+ + + Sbjct: 69 SAFTSWVYRITTFTALDLI----RKRNSSRETATEAEYLENAANADASPIASPDQITNLE 124 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +EL+ + + LPE LR A+ LRE++GLSYEEIA + C GTV SR+F AR++I Sbjct: 125 RKELQSRIDDAMTKLPEKLRTALQLREIEGLSYEEIAQQLQCKTGTVMSRLFNARKSIQK 184 Query: 184 KVQPLI 189 + L Sbjct: 185 HLADLF 190 >UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU56_HALO1 Length = 216 Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 12/178 (6%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 LV+R + GD +AF L RY +V +L V + D DVVQE FIKA+R LD F G+S Sbjct: 23 LVDRARDGDTEAFRALYQRYHRRVYALAYGVVQNKEDAMDVVQEGFIKAHRYLDRFEGNS 82 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS--------NPEN 120 +FYTWLYRI +N + +++ R VD +A + A E S NP Sbjct: 83 SFYTWLYRIVMNLSIDHIRKHKR---VRHVDFNDAISHGQDDAASEDSLLPRVLGQNPGK 139 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 ++ +E+R+ + + L + R + +REL+G+SYEE+A M+C GT+ SR+F AR Sbjct: 140 SLVRKEIREQISAALAKLSDKHRAVLVMRELEGMSYEEMAQAMECSKGTIMSRLFHAR 197 >UniRef50_A3DDU5 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Clostridium thermocellum RepID=A3DDU5_CLOTH Length = 220 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 113/188 (60%), Gaps = 12/188 (6%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +++ L++R +KGD +AF L+ Q KV ++ R + + D ++ QE F+KAY+++ +F Sbjct: 26 SEKELIKRAKKGDVEAFEQLIEGCQKKVFNIALRMLGNYDDASELAQEVFLKAYKSIKNF 85 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGG-----ALKEIS-NP 118 +GDS F TW+Y++ N + + R+ + V ++ E+ E GG +K+ S P Sbjct: 86 KGDSLFNTWIYKVTTNACLDEI----RKRKNKKVVYLD-EDIELGGNEIKRQIKDDSPGP 140 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E EL++ V +I LPE+ R I LR++ G +YEEIA I+ CP GTV+SRI RAR Sbjct: 141 ELKAEDNELKRAVMDSINMLPEEYRTVIVLRDIQGFTYEEIANIIKCPEGTVKSRINRAR 200 Query: 179 EAIDNKVQ 186 +A+ +Q Sbjct: 201 QALKKILQ 208 >UniRef50_Q67KY4 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KY4_SYMTH Length = 198 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 10/183 (5%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 LTD+ LVER Q+GD+ A L+ RY+ + +L R + + D D QEA ++ L + Sbjct: 4 LTDEQLVERAQEGDRCALGELISRYEQRTYNLAYRLMGNHADACDAAQEALVRVCVRLHN 63 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGR-RPPSSDVDAIEAENFESGG----ALKEISNP 118 FRGDS F TWLYR+ NT + L +GR R S D EA + G A+ + P Sbjct: 64 FRGDSQFSTWLYRVVTNTCLDELRRRGRTRCASLD----EAMPLDEGSVPRQAVDDSDGP 119 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E++ V R I LP D R+ + LR+L LSY+EIA ++ +GT++SR+ RAR Sbjct: 120 VEYAERHEVQAAVQRAIGRLPYDYRVVVILRDLHNLSYQEIATVLGTTLGTIKSRLHRAR 179 Query: 179 EAI 181 +A+ Sbjct: 180 QAL 182 >UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=Myxococcales RepID=A9FFY4_SORC5 Length = 292 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/186 (37%), Positives = 109/186 (58%), Gaps = 6/186 (3%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 + R+ D+ AFN LV+ Y+ +V +LV R + D DV QE F++ ++A+D FRG+S Sbjct: 99 FIARLVARDESAFNELVIMYERRVFALVYRMLGRRDEAEDVSQEVFVQVFKAIDQFRGES 158 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSS--DVDAIEAE---NFESGGALKEISNPENLML 123 TW+YRIAVN KN RR + DVDA+ + G ++ ++S P+ L+ Sbjct: 159 KLSTWIYRIAVNLCKNRTKYLSRRHAGAQDDVDAMAERVPLSAAKGVSVGDVSRPDELVE 218 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +L +V R I L + R A+ LR+++ +SYEEIA++ P GTV+SRI RAR + Sbjct: 219 GMQLEAVVKRAIGQLDPEFREALILRDVEDMSYEEIASVTGLPDGTVKSRIHRARGQLRA 278 Query: 184 KVQPLI 189 V+ ++ Sbjct: 279 LVEKMM 284 >UniRef50_UPI00016939CD RNA polymerase ECF-type sigma factor n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939CD Length = 202 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 5/183 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRAL 61 EQLTD+ VE++++G +A+ LV R+++ V +L+ R V + D+ QE F+KAYR+L Sbjct: 2 EQLTDEEWVEQIRQGHAEAYRYLVERHKNYVYTLIYRMVGHRETAEDLSQEVFLKAYRSL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 +RG++ F TWLYR+ N +YL + RRP +V A + +N+ +L PE Sbjct: 62 AQYRGEAKFTTWLYRLTTNLVTDYLRERKRRP--MEVWADKVKNW--FASLDPDKGPEEQ 117 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++ E R + + LPE R+ ++L SY+EI+ I+ PV TV +R++R + + Sbjct: 118 VILNEQRDALHEALLKLPEKYRIVLSLYHFQQFSYQEISDILQVPVKTVETRLYRGKSML 177 Query: 182 DNK 184 K Sbjct: 178 KQK 180 >UniRef50_A6GDP6 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDP6_9DELT Length = 239 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 110/189 (58%), Gaps = 9/189 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDS 68 LV R+++GD++AF LV YQ ++ LV R + + + D+ QE FI YR + ++RG+ Sbjct: 50 LVRRLKQGDERAFQELVHTYQDRIFGLVYRMIGNRQEAEDIAQEVFISVYRGIANYRGEG 109 Query: 69 AFYTWLYRIAVNTAKNYL-VAQGRR-PPSSDVDAIEAENFES--GG---ALKE-ISNPEN 120 FYTWLYRIA NT KN L +GR + D+D A + + GG AL+ + PE Sbjct: 110 RFYTWLYRIASNTTKNRLKYLKGRNFHRADDIDESPAAHTKGKDGGPVVALQSVVHGPEA 169 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + L Q + R I +L + R+ I LR++ G +Y EI AI GT++SR+ RAR A Sbjct: 170 TVQGNRLEQAIQREIANLEPEHRLLIVLRDIQGHTYAEILAITGLQQGTLKSRLHRARLA 229 Query: 181 IDNKVQPLI 189 + +++P + Sbjct: 230 LKVRLEPYL 238 >UniRef50_B1I6K2 RNA polymerase sigma factor n=5 Tax=Clostridiales RepID=B1I6K2_DESAP Length = 205 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 103/185 (55%), Gaps = 4/185 (2%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + LV R Q GD AF LV YQ K+ +L + D D+ QEAF+KAY AL FR Sbjct: 5 KTLVRRSQAGDTAAFEELVRLYQDKIYALACHLAGNQADAEDLAQEAFVKAYYALKGFRN 64 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLMLSE 125 ++ F TWL+RI VN N + + RP S + ++ + E L S P+ + + Sbjct: 65 EADFGTWLHRITVNQWIN--LKRRERPTLSLDEPVQTGDGEVQRELAAASAEPQEALERK 122 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E ++ V R + + + R+ + LRE+ SYEEIA ++DC +GTV+SRI RAR A+ +V Sbjct: 123 EFQRFVRRALGEISREHRVVLVLREMHDYSYEEIARVLDCSLGTVKSRISRARTALKERV 182 Query: 186 QPLIR 190 L R Sbjct: 183 GALAR 187 >UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alkaliphilus RepID=A6TSU8_ALKMQ Length = 201 Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 10/188 (5%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGD 67 L+E+ + GD ++F L++++Q K ++ R + + D DV QEA +KAYRA++ F+ Sbjct: 10 TLIEKSKDGDSESFEKLILQHQKKAFNIAYRMLGNLEDANDVTQEALLKAYRAINRFQEK 69 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE-NFESGGALKEI----SNPENLM 122 S+F TWLY I NT +++ R+ + V ++ E E G +E+ + PE L+ Sbjct: 70 SSFSTWLYTIVTNTCVDFI----RKNRKTKVVYLDREYEGEEGQYKREVYDDENGPEELL 125 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +E+++++ I L + R I LR+++G SY EIA I+DC GT++SRI RAR + Sbjct: 126 EKKEVQRLIHDAINLLNYEQRKVIILRDIEGFSYREIAEILDCAEGTIKSRINRARSNLK 185 Query: 183 NKVQPLIR 190 N + IR Sbjct: 186 NLITEKIR 193 >UniRef50_A6C5N0 RNA polymerase sigma factor RpoE n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C5N0_9PLAN Length = 207 Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 11/189 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKV-ASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 DQ L++ G +AF+ LV++YQ ++ +LV S D D QE F +A+ L +FR Sbjct: 5 DQYLIQECLAGRTEAFDQLVLKYQDRLFRTLVRVLGSSDDARDAAQEGFTQAFFKLKTFR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN----L 121 G +AFY+WL+RI+ N A + Q R+ + EN G +NP N + Sbjct: 65 GTAAFYSWLFRISFNAA----ITQKRKTKRTSATIDPQEN--PAGTWLVDTNPANHPPEV 118 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E +++V + + L E+ R + LREL+G+SY EIA I + P+GTVRSRIFR R + Sbjct: 119 AELAERKKLVHQALNELQEEYRTPLILRELEGMSYGEIAEITEIPLGTVRSRIFRGRNEL 178 Query: 182 DNKVQPLIR 190 K+ L + Sbjct: 179 KQKLNTLFQ 187 >UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD34_THET1 Length = 189 Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 7/176 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYRALD 62 D LV R Q+GD AFN LV RYQ ++ +L RY+ GD DV QEAF+ A++AL Sbjct: 5 NDDELVRRAQEGDLDAFNKLVERYQVQMYNLAIRYI--GDPFLAEDVTQEAFVAAWKALG 62 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 SFRG S F +WL+RI +N A + +R P S +D I E E PE Sbjct: 63 SFRGGS-FRSWLFRILINEAHDLRRRHVKRTPGS-LDQILEELGEFPQMGDPHIGPEETA 120 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 +S + + + I+ LPE+ ++ + L ++ GLSY+E+A + P+GTV+SR+FR R Sbjct: 121 VSAATFKAIEKCIQKLPEEYKLVLLLVDVQGLSYDEVATALRLPLGTVKSRLFRGR 176 >UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8Z5_9BACT Length = 238 Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 6/181 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D++LV+R + GD AF+ +V RY ++ ++V + + + D +V Q+AFI+A+R L +FR Sbjct: 49 DRMLVDRFKDGDASAFDEMVSRYWDRIYAVVHQLLRNHQDAEEVTQDAFIRAHRGLVNFR 108 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-----SNPEN 120 GDSAF TWLY+IA N A+N RR V + + ++ L EI +P++ Sbjct: 109 GDSAFSTWLYQIATNLARNRYWYWWRRKRDKTVSFDQPVSSDNETPLSEIYAAPVESPDD 168 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +++E V +E L R + LR + LSYEEI I+ VGTV+SRI RAR+ Sbjct: 169 ITVTQEFVDRVASGMEKLNAKHREILILRNVKNLSYEEIGTILGISVGTVKSRIARARDN 228 Query: 181 I 181 + Sbjct: 229 L 229 >UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S9_HALOH Length = 195 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 108/188 (57%), Gaps = 8/188 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 +D+ ++ + G+++ F LV +YQ KV + R + S D D+ QEAFIK +R L F Sbjct: 5 SDEKIINMILAGEKELFARLVEKYQRKVYNTTYRMLGNSEDASDLTQEAFIKTFRNLKRF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRR---PPSSDVDAIEAENFESGGALKEISN-PEN 120 RG ++F TWL+ I N ++ L + RR P D +E+ E+ +K+ S PE+ Sbjct: 65 RGKASFSTWLFTITTNLCRDELRKRQRRSASPHFPDGQHFMSEDIEN---IKDNSKVPED 121 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L + E + R I LP D + I LR++ G SY+EI+ I+ P+GTV+SR+ RAR++ Sbjct: 122 LYMGRETMASIQRAINKLPADQKEVIVLRDIQGFSYKEISEIIGVPMGTVKSRLSRARKS 181 Query: 181 IDNKVQPL 188 + ++ + Sbjct: 182 LQKHLKNI 189 >UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured marine microorganism HF4000_APKG8C21 RepID=B3TA07_9ZZZZ Length = 211 Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 100/184 (54%), Gaps = 13/184 (7%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYRALDS 63 D L+ R Q GDQ AFNL+V RYQ V +L +R + GD D+ QE FI AYRA+ Sbjct: 21 DAELIGRTQGGDQAAFNLIVERYQSNVYNLSARIL--GDRTAAEDITQETFISAYRAISR 78 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE--SGGALKEISNPENL 121 FRG S WL RIA N + +++ A RRP S ++ F S G +PE Sbjct: 79 FRGGS-LRAWLLRIASNHSYDWIRASRRRPQVSLDQSLLNPGFSPPSTGP-----SPEQE 132 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L ELR + R I +LP D R + L ++ G+SYEE A +GTV+SR+ RAR + Sbjct: 133 ALRSELRVELQRAILTLPPDQRTTLVLIDVQGMSYEETAEATRASIGTVKSRMSRARSRV 192 Query: 182 DNKV 185 N + Sbjct: 193 RNHL 196 >UniRef50_Q5X4Y5 Sigma factor RpoE (Sigma 24) n=5 Tax=Legionella pneumophila RepID=Q5X4Y5_LEGPA Length = 187 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 8/178 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 L+D+ L+E QKG+ AF+ L RYQ K+ ++ Y +V D+ QE IK +R L Sbjct: 7 LSDESLIELAQKGNGLAFDKLFERYQGKIRQMIYFYTHDWTNVNDLTQEVLIKVFRHLPY 66 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F S F TWLY+I NT KNY S++ ++ E F + ++PE+ ++ Sbjct: 67 FNERSQFSTWLYKITQNTIKNYFRTNNLYT-DSEMQYMD-EQFSTPH-----NSPESDIM 119 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E + + + L E+LR+ L DG +Y++IA M CP+GTVRSRIFRAR+ + Sbjct: 120 GLEFEKQIEAAMSCLSEELRLCYGLHIFDGQTYQDIAKEMHCPIGTVRSRIFRARKQL 177 >UniRef50_A6NW06 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW06_9BACE Length = 198 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 2/174 (1%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDS 68 LV R ++GDQ+AF LV Q ++ +L R S D D+ QEAF+ A+R LD F+GDS Sbjct: 7 LVARAKRGDQEAFGALVEANQGRIYNLTLRMTGSPEDALDLSQEAFLNAWRGLDKFQGDS 66 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-SNPENLMLSEEL 127 +F TWLYR+A N ++L + RR S +++ E E L + +PE + EL Sbjct: 67 SFSTWLYRLASNVCIDFLRREKRRKDISMTVSLDDEEEERQAELPDHRHSPEREVERREL 126 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 R+ + R + SL E+ R + +REL G+SY EI A++ GTV+SRI RAR A+ Sbjct: 127 REDIRRGLMSLSEEHRQVLVMRELSGMSYAEIGAVLRLEEGTVKSRIARARVAL 180 >UniRef50_A9BGN8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGN8_PETMO Length = 186 Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 + ++ +E ++K D AF L Y K+ ++ YV ++ D +QE FI+ + ++ F Sbjct: 1 MIEEKFIEDLKKNDPDAFKKLYEEYAPKIYGVLKNYVNHDEIEDALQEVFIRIIKGINGF 60 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP--ENLM 122 +G S TW+YRIAVN KNY + +R + VD E E + ++ ISN +N + Sbjct: 61 KGLSKLSTWIYRIAVNVGKNY-SRKYQRSKETSVD-FEDET-DQNPNIQAISNTNVKNEV 117 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L E Q++ +E L ++ R+ I LR++DG+SY EIA IM+ P+GTV+S++ AR+ + Sbjct: 118 LEELDYQMILNIMEKLDKEERLLIKLRDIDGMSYNEIAEIMEIPLGTVKSKLHYARKKL 176 >UniRef50_Q0AVE0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVE0_SYNWW Length = 193 Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 4/177 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 ++Q LV++ +GD +AF LV++YQ+KV +L RY+ + D D+ QE F+KA+R+L +F Sbjct: 3 SEQELVKKSMEGDTQAFEKLVLQYQNKVYALSFRYMGNEDDAYDMSQEVFLKAFRSLKTF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRR--PPSSDVDAIEAENFESGGALKEISNP-ENL 121 +G+S+F TW++RI N + L + RR P S D A+ + E + + S P + + Sbjct: 63 KGNSSFGTWIFRITTNVCLDELRRRKRRIVPLSLDEAAVTSRGSEVEREIVDPSPPVDRV 122 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 +EL Q + ++ + + + I LR+ LSYE+IA +++C VGTV+SR+ RAR Sbjct: 123 YEQKELSQYIQGLLDQMKPEHKAVIILRDSMDLSYEQIAYVLNCSVGTVKSRLSRAR 179 >UniRef50_Q01Z55 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z55_SOLUE Length = 186 Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 110/191 (57%), Gaps = 14/191 (7%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKA 57 M + TD+ LVE ++G+++AF +L Y+ K+ S+ R+ SGD D+ Q+ F+K Sbjct: 1 MVLECTDRELVEGCRRGEREAFRVLFETYKDKIYSIALRF--SGDQALAMDIAQDTFLKL 58 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 Y ++ FRG+S F TW+YR+ VN+ ++ R P +D E ++ + Sbjct: 59 YSSIADFRGESQFSTWVYRLVVNSCLDHKRKSWRMIPLAD---------ELLAVMRAPGD 109 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 + ++ E+ + V R +E LPE+ R+ + LR +GL+YE+IA ++ C +GTV SR+ RA Sbjct: 110 ALHAVIRTEMSERVQRAVEKLPEEQRIVVVLRYTEGLAYEQIAEVIGCSMGTVASRLNRA 169 Query: 178 REAIDNKVQPL 188 A++ ++ L Sbjct: 170 HRALERRLANL 180 >UniRef50_A5V1V8 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Chloroflexi (class) RepID=A5V1V8_ROSS1 Length = 224 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 103/176 (58%), Gaps = 5/176 (2%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDS 68 L+ R Q GD +A LV+ Q + S+ + + D D+ QEAFI+ +RAL + G+S Sbjct: 8 LIRRAQAGDPEALTHLVLSQQQYIYSIAMSVLKNPDDAADLTQEAFIRLFRALPQYNGES 67 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE---ISNPENLMLSE 125 F TWLYR+ VN ++ L +GR+ P V + E+F++ G + + S+PE + S+ Sbjct: 68 RFTTWLYRLVVNLGRDELRRRGRQAPLVSVPESD-EDFDAIGTIADDDRWSDPEVALDSQ 126 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ELRQ V R ++ L E R+ +TL + + Y +IA I+D P+ TV+S I R +E + Sbjct: 127 ELRQEVRRALDQLEEHYRLVLTLYYFEDMKYTDIAEILDLPLNTVKSHIRRGKERL 182 >UniRef50_Q6MPU7 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPU7_BDEBA Length = 206 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 12/169 (7%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDS 63 +TD LVE+V+ GD+++F+ LV R+Q V + R+V D DV QEAFIKAY L++ Sbjct: 7 VTDLELVEKVKSGDRRSFSELVKRHQRSVLRMSLRFVKDMDTAEDVTQEAFIKAYEKLNT 66 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F G S+F +WL++IAVNTA+N L R + D+D ++ L + E ++ Sbjct: 67 FEGRSSFKSWLFQIAVNTARNKLREWKR--DTVDIDDVQ---------LAVDAEAETTLV 115 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 + I+ +E LP + A+ LR + LS+ EIA IM+CP T ++ Sbjct: 116 HTAVSDILKNEVEKLPFKQKTALVLRVYEDLSFNEIADIMECPYDTAKA 164 >UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIR4_9FIRM Length = 209 Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 3/171 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 + ++ LV R Q+GD A++ L+ Y+ KV +L R + D D+ QEAF+KA+RAL S Sbjct: 3 IKEKELVARCQRGDLSAYDELMKCYEQKVYALCFRMSGNHTDAQDLAQEAFLKAFRALPS 62 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA-IEAENFESGGALKEIS-NPENL 121 F+G S F TWLYRI NT + Q RRP +D ++ ++ + L + +P + Sbjct: 63 FKGQSQFSTWLYRIVTNTCLDERRRQARRPGLVSMDKPLDTDDGQIAVTLPDKGPDPLSE 122 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 L+ EL+ + + LP R+ + +R+L+G SY+EIAA++D +GTV+S Sbjct: 123 ALNSELQAEIQELLSRLPAGQRIVVVMRDLEGYSYDEIAAVLDVNIGTVKS 173 >UniRef50_B8I3Y9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I3Y9_CLOCE Length = 197 Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 9/180 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 ++ L+ + + GD AF L+V Y KV ++ R + + D + QE FIKA++ + F+ Sbjct: 5 NENLLHKARNGDAGAFEELMVVYYSKVYNICYRMLNNTEDAYEQAQETFIKAFKYIKDFK 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE----SGGALKEISNPENL 121 G+ A YTWLYRIA N +Y+ +R S IE FE + +I PE + Sbjct: 65 GNCAIYTWLYRIATNVCLDYIRKNKKRKEVS----IEQSTFEDLQLKDSLVSDIPGPEKI 120 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +Q + + + E R+ I LR+ GLSY+EI+ I+ PVGTV+SRI RAR + Sbjct: 121 AEDNARKQAIRTAMTKMNEKNRLVIILRDFMGLSYDEISEIIKIPVGTVKSRISRARNEL 180 >UniRef50_A0LHW6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHW6_SYNFM Length = 202 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 112/183 (61%), Gaps = 13/183 (7%) Query: 16 KGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDV---VQEAFIKAYRALDSFRGDSAFYT 72 +GD+ AF+ LV+R++ +V +L R + GD + QE F++ +R++ FR S+F T Sbjct: 24 EGDRTAFDRLVLRHKDRVFNLCWRLL--GDREEANEQAQEVFVRVFRSIKDFRFKSSFST 81 Query: 73 WLYRIAVNTAKNYLVAQG--RRPPSSDVDAIEAENFESGGALKEISNPE----NLMLSEE 126 WLY IAVNT +N L + RR +DA++ + + A+ E+ +P + M E Sbjct: 82 WLYAIAVNTCRNRLKSSEYRRRRRMVSIDALQDPDCDR--AVPELRDPSPSVLDRMTDRE 139 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++ I+SLPE+ R + LR+++G++YEEIAA+ +GTV+SR+ RAR+ + +K++ Sbjct: 140 RDGLIQSAIDSLPEESRTIVVLRDIEGIAYEEIAAVTRLNLGTVKSRLARARQQLRDKLK 199 Query: 187 PLI 189 LI Sbjct: 200 GLI 202 >UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IN25_9CLOT Length = 198 Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 9/184 (4%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 E++ + L+++ + GD AF L Y KV S+ R + + D + QE FIKA++ + Sbjct: 2 EKINENNLLQKARNGDVGAFEELTTEYYSKVYSICYRMLNNTEDAYEQAQETFIKAFKYI 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE----SGGALKEISN 117 F+G+ A TWLYRIA N +++ R+ + V +IE FE + E Sbjct: 62 KDFKGNCAISTWLYRIATNVCLDFI----RKHKNKKVISIEQNTFEDLQLKDSLVSENPG 117 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 PE + + +Q + ++ + E R+ I LR+ GLSY+EI+ M PVGTV+SRI RA Sbjct: 118 PEKVAETNAQKQAIKEAMDKMNEKNRLVIILRDFMGLSYDEISDTMKVPVGTVKSRINRA 177 Query: 178 REAI 181 R + Sbjct: 178 RNEL 181 >UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESI6_SORC5 Length = 266 Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDS 68 L+ER QKGDQ AF LV R+Q + ++ V D ++VQ+AF++ Y+ L SF+G S Sbjct: 69 LIERAQKGDQAAFRSLVERHQRRAFAIAMGLVRDENDARELVQDAFLRVYKGLGSFQGGS 128 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK---EISNPENLMLSE 125 +F+TWLYRI N A + + GRR ++ +A + +S L + ++P N++ Sbjct: 129 SFFTWLYRIVTNLAIDLMRKPGRR--DLELQENQAADEQSDFPLVARIDGADPLNVVRRR 186 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E+ + +++LP R I +RE++G+SYEE+A M GT+ SR+F AR+ + Sbjct: 187 EIAGRIQAALDALPPYHRGVILMREVEGMSYEEMAQAMGVSKGTIMSRLFHARQKL 242 >UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNI5_AKKM8 Length = 199 Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 101/181 (55%), Gaps = 4/181 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKV-ASLVSRYVPSGDVPDVVQEAFIKAYRALDS 63 L D LV R ++GD +AF+ LV+R+ K+ A+L D D+ QEAF KAYRAL Sbjct: 10 LEDTELVARAREGDSRAFDELVIRHSRKLHATLYQMTDNYDDAYDIAQEAFSKAYRALRY 69 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS---NPEN 120 F G SAFYTWL+ IAVN A+N+L + RR S D ++ E + + + +PE Sbjct: 70 FNGQSAFYTWLHSIAVNHARNFLKKRNRRMTYSLDDDEYGDHTEKDMNMADETDGADPER 129 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 EL+ + ++ L R + L ++ GL++ EI+A++ GT+RSR+ A + Sbjct: 130 RTHLNELQLKINEALKKLSTKHREVVVLHDVKGLNHTEISALLGISEGTLRSRLHYAHKE 189 Query: 181 I 181 + Sbjct: 190 L 190 >UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RFZ5_MOOTA Length = 200 Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 10/177 (5%) Query: 15 QKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTW 73 +K +F LVV YQ KV +L + + D D+ QE F++AY+ LD FR ++ TW Sbjct: 11 KKNGVPSFEELVVNYQDKVYNLSYQLTGNHADAQDLAQEVFVRAYQGLDKFRNEADPGTW 70 Query: 74 LYRIAVNTAKNYLVAQGRRPPSS-DVDAIEAENFESGGALKEIS----NPENLMLSEELR 128 L+RI VN N R P S D AE G +E++ +P +L+ EL+ Sbjct: 71 LHRITVNLYLNLRRKITRHPVVSLDAPLSTAE----GEVTREVAAAGGDPVDLVEEMELK 126 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 V + LP + R A+ LREL G SYEEIA+I+ C +GTV+SR+ RAR+A+ KV Sbjct: 127 GFVRSALNQLPPEYRTALVLRELQGYSYEEIASILGCSLGTVKSRLNRARQAMKEKV 183 >UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C377D Length = 245 Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 98/178 (55%), Gaps = 14/178 (7%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D+ L+ G + AF LV RYQ ++ + R V S D DVVQ+AF+ AY+AL SF+ Sbjct: 5 DRRLIAECLGGQRDAFGTLVSRYQTRLYNSALRLVNSPEDAADVVQDAFLSAYQALSSFK 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL-----KEISNPEN 120 GD+ F+TWLYRIA N A + + + RRP ++ EN+ L E P Sbjct: 65 GDAEFFTWLYRIAFNIAVS--LKRKRRP------SVSLENYSQQTGLDPDDPSEYVKPSA 116 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + E + + I L + R + L+++DGL YE+IA + P+GT+RSR+ RAR Sbjct: 117 ALERTEDERQLHGAIARLSSEHREVLLLKDIDGLKYEDIAEALGVPIGTIRSRLHRAR 174 >UniRef50_Q2LQI1 Sigma factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQI1_SYNAS Length = 217 Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 17/184 (9%) Query: 14 VQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPD---VVQEAFIKAYRALDSFRGDSAF 70 QKGD +AF +LV RYQ K+ ++ Y +GD + VVQ+AF+ A+R + FRG++ F Sbjct: 27 CQKGDVEAFGILVERYQKKMLNVA--YRMTGDYEESCEVVQDAFLAAFRTIKKFRGEARF 84 Query: 71 YTWLYRIAVNTAKNYL----------VAQGRRPPSSDVDAIEA-ENFESGGALKEISNPE 119 TWLY I +N+ KN L G P AI+ + + G+ ++ S E Sbjct: 85 STWLYGIVINSTKNRLKQLKRDKSRFWHAGDNPGDPGDGAIDGFDCLAASGSGQQESLLE 144 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 +L +EL V + I L D R + LR++ GLSY+EI I+ P GTVRSR+FRAR Sbjct: 145 HLE-KKELEAGVQKCIGLLESDHREILILRDIQGLSYDEIVTILKIPPGTVRSRLFRARI 203 Query: 180 AIDN 183 A+ + Sbjct: 204 ALKD 207 >UniRef50_C8XA65 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Actinomycetales RepID=C8XA65_NAKMY Length = 208 Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 97/180 (53%), Gaps = 6/180 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 + D VLV R Q GD +AF LV RYQ + + R + D DV Q AFI A+R L Sbjct: 24 VDDAVLVLRAQDGDPRAFEQLVRRYQQVMFGVAVRILGDRDEAEDVTQNAFIAAWRRLPE 83 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI--SNPENL 121 FR D+ F TW+YRI N A N Q RRP +D + +EA SG + ++PE Sbjct: 84 FRADAKFSTWMYRIVTNQALNQARGQSRRPRPADRETLEA---ASGSWVSTTVDADPERH 140 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L V R + +LP+ LR+ LRE+ SY+E+A I + + T R RIFRAR+ + Sbjct: 141 AQRAALLAAVRRALAALPDQLRVCWLLREVHERSYQEVADITEVSLDTARGRIFRARQRL 200 >UniRef50_C1AEN0 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEN0_GEMAT Length = 196 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 5/190 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 L D +V G+++AF LV RYQ ++ + V R + D D+VQE FI+ YR + Sbjct: 8 LEDGDVVSSFLAGEERAFEELVDRYQGRLLNFVYRTIGDRDRAEDLVQEVFIRVYRHIAR 67 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEA--ENFESGGALKEI-SNPEN 120 F F TW+Y IA N AKN L + R P I+A E+ + +++ + P++ Sbjct: 68 FDRSKKFSTWIYTIASNLAKNELRNRSRNPLVL-FQTIKAKFEDEDRPLQFEDVHTRPDD 126 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L LR++V +++ LP R LREL+G SYEEIA I +GTV+SR+ RAR A Sbjct: 127 LFRKRHLREMVEQSVGKLPAHHREVFVLRELEGKSYEEIAEITGVNLGTVKSRLNRARTA 186 Query: 181 IDNKVQPLIR 190 + P++R Sbjct: 187 FAEIIAPMVR 196 >UniRef50_A9G0E6 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G0E6_SORC5 Length = 195 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 15/184 (8%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 TD+ LV++ + GD +AF +LV RYQ ++ L V SG + DV QE F++AY+ALD F Sbjct: 5 TDRELVDQARSGDAQAFGVLVRRYQKRIFRLAFHLVRSGAEAEDVTQETFVRAYQALDRF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRP-----PSSD--VDAIEAENFESGGALKEISN 117 G S +TWLYRIAVN + N + A R+P P+ D ++A+ E S G + Sbjct: 65 DGRSEPFTWLYRIAVNLSLNMIRA--RKPSKNSTPADDPRIEALLLETRPSHGV-----D 117 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P EL + I++L + LR + L +DG+ +E+ + I+ CP GTV R+ A Sbjct: 118 PAASTQRRELAAALCDGIDALSDTLRTTLILVCIDGVPHEDASRILGCPEGTVAWRVHEA 177 Query: 178 REAI 181 R + Sbjct: 178 RRKL 181 >UniRef50_D0LKU5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LKU5_HALO1 Length = 205 Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 14/183 (7%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 T+ ++ ++G+++A L +Y+ +V LV+R V G+ +V Q+AF++ +R + FR Sbjct: 25 TEAAIIAGCRRGEKRAREALYHQYKRRVFGLVTRIVGPGEAEEVAQDAFVRIFRGIPKFR 84 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGG-ALKEISNPENLMLS 124 GDSA TW+YR+AVN A + + R +F +G L E++ P + Sbjct: 85 GDSALGTWIYRLAVNAALTHATRRKR-------------HFHAGDEVLAEVAAPAQVSRD 131 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 L + R + LP R + L +++GLS+EE A I+ C VGT +S++ +AR + Sbjct: 132 PNLAARLERALAELPPGYRAIMVLHDIEGLSHEECANILGCRVGTSKSQLHKARARMRTL 191 Query: 185 VQP 187 + P Sbjct: 192 LGP 194 >UniRef50_A1HLQ9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLQ9_9FIRM Length = 183 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 13/182 (7%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + V + + GD+ AF LV Y+ ++ ++ V D D+ Q+ FIKA++A+ + + Sbjct: 6 KAWVSKARSGDKAAFGKLVEFYRGRIFAVAYGIVGRREDAEDIAQDTFIKAFKAISALKA 65 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRP--PSSDVDAIEAENFESGGALKEISNPENLMLS 124 + AFY WL RIAVNT+ NY + P D AE F G PE Sbjct: 66 EEAFYGWLVRIAVNTSINYKKGAKDKQFVPIDDA----AELFYQG------ETPETAAEK 115 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E ++ + + LP + R + LRE++GL+Y+EIAA++D P+GTV+SRI AR+ + Sbjct: 116 REGEAMMAKLLAELPPEHRAVLVLREIEGLAYDEIAAMLDIPLGTVKSRINHARDKLRRA 175 Query: 185 VQ 186 VQ Sbjct: 176 VQ 177 >UniRef50_C5CIP4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP4_KOSOT Length = 186 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 105/182 (57%), Gaps = 12/182 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 + ++ L+E ++K + A+ +L +Y ++ S++ Y+ + DV DV+QE FIK ++ + F Sbjct: 1 MDEKKLIEGLKKKEMWAYEVLYDKYAPRLGSVIRSYLGTDDVDDVLQETFIKVFKNIKKF 60 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGR-RPPSSDVDAIEAENF----ESGGALKEISNPE 119 RG++ TWLYR+A+N + + + R R +D + + F +E+ N Sbjct: 61 RGEAKLSTWLYRVAINVCNDIIAKRKRNREYLTDFQENDEKPFLEPPAPNDVFREVMNE- 119 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + EEL I I LPE+ R+ I LR+++GLSYEEIA I+ P GT++SR+ AR+ Sbjct: 120 --LSYEELTNI----IAKLPEEDRLLIKLRDIEGLSYEEIAQILGKPNGTIKSRLHYARK 173 Query: 180 AI 181 + Sbjct: 174 RL 175 >UniRef50_B3DXV9 DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXV9_METI4 Length = 204 Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 19/187 (10%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLV-SRYVPSGDVPDVVQEAFIKAYRALDSF 64 TDQ L+ R++ G+ +AF++LV RYQ ++ ++ + D DV+ E F+KAY+ + F Sbjct: 14 TDQELILRMKSGELEAFDILVERYQKRLYRVIYGVLLHHEDTNDVLMETFLKAYKNIGGF 73 Query: 65 RGDSAFYTWLYRIAVNTA-----KNYLVAQGRRPPSSDVDAIEAE----NFESG-GALKE 114 R ++FYTW+YRIAVNTA K+ Q P SD + + E ++ SG A+K+ Sbjct: 74 RIGASFYTWIYRIAVNTAISFKRKSKFTPQP-FPHFSDEEEGQVEKEFVDYRSGEQAVKQ 132 Query: 115 ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 I +EL +I+ + L E R + L +L+ LS+ EIA IM C GT+RSR+ Sbjct: 133 IE-------MKELGKILNEALSKLSEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIRSRL 185 Query: 175 FRAREAI 181 F A + + Sbjct: 186 FYAHKQL 192 >UniRef50_D0LYF8 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF8_HALO1 Length = 220 Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 7/136 (5%) Query: 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE 107 D+VQE ++AYR D+F+ DS WL+RI NT N Q + +DA E Sbjct: 38 DLVQETMLRAYRFWDTFQQDSNCKAWLFRILTNTFINSY--QKNKRSREVLDAAHNEQRA 95 Query: 108 SGGALK-----EISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAI 162 + G L ++ NPE L+LS+ L V R +ESLP D R+A+ L +++G SY+EIA I Sbjct: 96 TDGILVHERALDLRNPEELLLSQTLSDDVVRALESLPADFRVAVVLCDVEGFSYKEIAEI 155 Query: 163 MDCPVGTVRSRIFRAR 178 ++CPVGTV SR+ R R Sbjct: 156 LECPVGTVMSRLHRGR 171 >UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacillales RepID=SIGW_BACSU Length = 187 Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 103/183 (56%), Gaps = 9/183 (4%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 +++V+KGDQ AF +V Y+ K+ L R + + + D+ QEAFI+AY +DSF + Sbjct: 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRK 68 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN----PENLMLSE 125 F TWLYRIA N + + ++ P +DA E E +I PE+ ++S Sbjct: 69 FSTWLYRIATNLTIDRI---RKKKPDYYLDA-EVAGTEGLTMYSQIVADGVLPEDAVVSL 124 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 EL + + I LP+ R I L+ +D LS EI I++ PVGTV++RI R REA+ ++ Sbjct: 125 ELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQL 184 Query: 186 QPL 188 + L Sbjct: 185 RDL 187 >UniRef50_Q93RF4 Orf protein n=1 Tax=Treponema medium RepID=Q93RF4_TREMD Length = 215 Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 11/182 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASL-VSRYVPSGDVPDVVQEAFIKAYR 59 +++ L D + + V G+ +AF +LV +YQ +V L +S + + D D VQ+ +KAY Sbjct: 16 LNQTLRDYEVCKAVLNGNTQAFAVLVAQYQKRVYMLGLSFFDNTDDCEDFVQDVMLKAYA 75 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FR ++ F TWL RIA NTA N A+ RR S D E E NPE Sbjct: 76 ALGTFRAEAPFATWLMRIAYNTAIN--SAKKRRSYMSLADGTEIE--------YRGDNPE 125 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L+E + V + +LP++ R+ I L +SY +IAA+ + P+ T++S IFRA++ Sbjct: 126 EKHLNECIILSVREAVNNLPDNYRICIDLYFFYDMSYTDIAAVTELPLNTIKSHIFRAKK 185 Query: 180 AI 181 + Sbjct: 186 LL 187 >UniRef50_B4D0E9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0E9_9BACT Length = 195 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 4/180 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D L+ R Q G+ AF+ LVV+Y ++ LV + D D++Q+ + KAYR++ FR Sbjct: 10 DDELIARTQAGEAAAFDELVVKYSPRLYGLVYNMTSNHEDTNDLMQDIWSKAYRSIAGFR 69 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS--DVDAIEAENFESGGALKEISNPENLML 123 G S+FYTW++ I VN N+L +GRR S D+D+ ++ + L S P Sbjct: 70 GKSSFYTWIHSIGVNMTINFLKKRGRRYTLSLDDIDS-NVQHDKEFIELTATSTPVREAD 128 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EL++ + ++ L D R +T+ ++ G+ + EIA I+ GTVRSR+F A + N Sbjct: 129 LSELQKRLNEAMQKLSHDHRAVVTMFDIQGMPHAEIAKILGISEGTVRSRLFYAHRQLQN 188 >UniRef50_Q1INR3 Sigma-24, ECF subfamily n=3 Tax=cellular organisms RepID=Q1INR3_ACIBL Length = 202 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 4/179 (2%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYR 59 +S +T+ +ER + GD ++F L ++ +V SL R + + D+ QEAF++ +R Sbjct: 8 LSTGITEAEAIERAKNGDPESFEALYGLHKRRVYSLCLRMTGNTAEAEDLTQEAFLQLFR 67 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + +FRG+SAF TWL+R+AVN +L +G P S +++E + + G K+I + Sbjct: 68 KIATFRGESAFSTWLHRLAVNVVLMHLRKKG-LPEVSLEESMEPQ--QEDGPKKDIGARD 124 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 N++ R + R IESLP R+ L +++G + EIA +M C +G +S++ +AR Sbjct: 125 NVLAGSIDRVNLGRAIESLPPGYRIIFVLHDVEGYEHNEIAEMMGCSIGNSKSQLHKAR 183 >UniRef50_C0ZCF1 RNA polymerase ECF-type sigma factor n=3 Tax=cellular organisms RepID=C0ZCF1_BREBN Length = 196 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 109/193 (56%), Gaps = 18/193 (9%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP----DVVQEAFIKAYRA 60 +TD L+ +++G+ + + L+ RY+ K+ S V+ + + D+ QE F KAY++ Sbjct: 1 MTDSQLIREIKEGNLECYAELIRRYEKKILSFVTHLLRQAHLEHIAEDICQETFYKAYKS 60 Query: 61 LDSFRG-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV---DAIEAENFESGGALKEIS 116 + SFR ++ F TWLY IA +N ++++ R+ +SDV D ++ S L Sbjct: 61 IHSFRDVEATFSTWLYTIA----RNSVLSELRKSRNSDVYLDDTLQVP-MASPKTL---- 111 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 PE ++L E +V I SLPE R A+ LRE + + Y EIA I+D V +V+S +FR Sbjct: 112 -PEQVLLRNERESMVRLAINSLPEKQRSALILREYEQMDYTEIATILDLTVSSVKSLLFR 170 Query: 177 AREAIDNKVQPLI 189 AR++I +++ I Sbjct: 171 ARQSIRGQLENYI 183 >UniRef50_C6CUE1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Bacillales RepID=C6CUE1_PAESJ Length = 198 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 107/188 (56%), Gaps = 12/188 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP----DVVQEAFIKAYRA 60 +TD L+ ++ G+ + ++ L+ RYQ K+ + + + S + D+ E F KAYR+ Sbjct: 1 MTDSQLIREIKDGNIELYSELMRRYQRKILAFIYHMLKSAKLELLAEDLCSETFYKAYRS 60 Query: 61 LDSFRG-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 L SFR D++F TWLY IA NT ++++ R+ S+ V ++ N ++ PE Sbjct: 61 LHSFREVDASFSTWLYTIARNT----VLSELRKQKSAHV-PLDESNMMPAAPPDQV--PE 113 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 +L E +V I +LPE R A+ LRE D L Y+EIA I+ V +V+S +FRAR Sbjct: 114 QHVLRNERMAMVREAINNLPEKQRSALILREYDQLDYQEIANILGQTVSSVKSLLFRARA 173 Query: 180 AIDNKVQP 187 ++ ++++P Sbjct: 174 SVKSQLEP 181 >UniRef50_C8PSN5 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSN5_9SPIO Length = 219 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 11/182 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASL-VSRYVPSGDVPDVVQEAFIKAYR 59 +++ L D + + V G+ +AF +L +YQ +V L +S + + D D VQ+ +KAY Sbjct: 18 LNQALRDYEVCKAVLNGNTQAFAILAAQYQKRVYMLGLSFFDNTDDCEDFVQDVMLKAYS 77 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FR ++ F TWL RIA NTA N + + R +D IE NPE Sbjct: 78 ALGTFRAEAPFATWLMRIAYNTALNSVKKRNRYSSLADGTEIEYRG----------DNPE 127 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L+E + V + SLP++ R+ I L +SY +IAA+ + P+ T++S IFRA++ Sbjct: 128 EKHLNECIVLSVREAVNSLPDNYRICIDLYFFYDMSYTDIAAVTELPLNTIKSHIFRAKK 187 Query: 180 AI 181 + Sbjct: 188 IL 189 >UniRef50_A2U163 RNA polymerase sigma factor n=1 Tax=Polaribacter sp. MED152 RepID=A2U163_9FLAO Length = 201 Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 103/187 (55%), Gaps = 3/187 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 L++ ++ +Q+G AF +L+ Y+ KV + +VP+ D D+ QE F++ +R++ Sbjct: 11 LSELDFIKELQEGKSSAFGILLNDYEQKVFNTCMSFVPNKEDAEDIAQEVFLEVFRSIHK 70 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI--EAENFESGGALKEISNPENL 121 F+G+S TW+YRIA N + ++ + + + + +I A + E +P + Sbjct: 71 FKGNSKLSTWIYRIATNKSLEFIRKKNTKKRFAFMQSIVGNAIPIDKTNYFTEFKHPGII 130 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++E +F+ I +LPE R+ TL ++DG SY+EI I + +V S +FRA++ + Sbjct: 131 LENKEQAATIFKAINTLPESQRVVFTLAKIDGKSYQEIVEITSKSLSSVESIMFRAKKNL 190 Query: 182 DNKVQPL 188 K+ L Sbjct: 191 KEKLSNL 197 >UniRef50_A6G087 RNA polymerase sigma-E factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G087_9DELT Length = 198 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 6/157 (3%) Query: 28 RYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYL 86 RYQ KV ++ ++ + D DVVQE+FIK +R + F G+S+FYTWLYRI N ++L Sbjct: 3 RYQRKVYAVAFGFLRNQEDALDVVQESFIKVHRYIGKFEGNSSFYTWLYRIVANLCIDHL 62 Query: 87 VAQGRRPPSSDVDAIEAENFESGGA-----LKEISNPENLMLSEELRQIVFRTIESLPED 141 R D + + + + L + +P +++ +E+ Q V +++ L + Sbjct: 63 RKAKRHRDVEFDDGLRHDGKDEPPSDLLPHLAQFGDPSDMLRRKEILQAVEASLDHLSDK 122 Query: 142 LRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 R I +REL G+SYEE+A M C GT+ SR+F AR Sbjct: 123 HRAVIVMRELQGMSYEEMAQAMKCSKGTIMSRLFHAR 159 >UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RAI8_AMMDK Length = 215 Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 12/188 (6%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 L+E+ + G +AF LV+ YQ +V L R + D D+ QE F++AYR L SFR ++ Sbjct: 7 LLEQARAGSHQAFEELVLAYQDRVYGLCYRLTGNHDDAEDLAQEVFVRAYRGLRSFRAEA 66 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL-KEISNPENLMLSEEL 127 F T+L+RIAVN N+ RR + + +++ G L +++++ +L EE Sbjct: 67 DFGTYLHRIAVNLFLNH-----RRKANHNTLSLDDPVSVPDGELPRQVADGNHLHPEEEA 121 Query: 128 RQ-----IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + +V R + SL + R + LRE++ +SYEEIAA++ GTV+SR+ RAR A+ Sbjct: 122 EKREFIRLVRRALNSLSREHRAVLVLREMEEMSYEEIAAVLGVAPGTVKSRLNRARAALQ 181 Query: 183 NKVQPLIR 190 + + R Sbjct: 182 KALIKMAR 189 >UniRef50_A4CQ62 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CQ62_9FLAO Length = 194 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 7/186 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPD-VVQEAFIKAYR 59 M++QL D+ L+ RV G+ +A+ +LV RY V +L R + +V + Q+ F+KAY+ Sbjct: 1 MNQQLADRDLIARVLDGEDRAYEVLVDRYSQMVFTLAVRMLRDREVAEETAQDIFVKAYQ 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +L +RG + F TWLY IA + + + A+ +R S D G L ++ + Sbjct: 61 SLSGYRGSARFSTWLYTIAYHRILD-VAAREKRHRSYRTD-----ELPEGRPLCDLEDTW 114 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + ++ E R ++ +E LPED R+ I+L L S EIAAI GTV+ R+FRARE Sbjct: 115 SQLMEGERRDLILMALEELPEDDRLLISLFYLQEQSLREIAAITGIRAGTVKVRLFRARE 174 Query: 180 AIDNKV 185 + + + Sbjct: 175 RLRDLI 180 >UniRef50_Q01V29 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01V29_SOLUE Length = 220 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 15/187 (8%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALD 62 ++ D LVE +++G ++A+ L+ R+Q V +L R + G+ DVVQE F+K +R + Sbjct: 18 EVEDFRLVESLREGSERAYEELLTRFQQPVYALALRLLDDQGEACDVVQEVFLKVFRNIG 77 Query: 63 SFRGDSAFYTWLYRIAVNTAKN---YLVAQGRRPPSSDVDAIEAENFESGGALKEI---- 115 SFRG S TW+YRI VN A N + R D ++ N LKE+ Sbjct: 78 SFRGQSTLKTWIYRITVNEAHNARRWFFRHRRAEVELDKAPEDSRN------LKEVIPDR 131 Query: 116 -SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 +P + S E ++ +E + R A+ LR++ L+YEEIA ++ +GTV+SRI Sbjct: 132 SRSPFDEAFSREQHVMIEAALERINPIFREAVVLRDITDLAYEEIAEVLGVSLGTVKSRI 191 Query: 175 FRAREAI 181 R REA+ Sbjct: 192 LRGREAL 198 >UniRef50_B3E7K8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacter lovleyi SZ RepID=B3E7K8_GEOLS Length = 203 Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 104/184 (56%), Gaps = 7/184 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 +Q L+ + GD AF LV+RYQ + ++ R + D ++VQE F+ A+R + +FR Sbjct: 15 EQQLLAACRNGDTHAFEQLVLRYQRGLYNVAFRISGNEADAAEIVQETFLAAWRKIKAFR 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN--PENLML 123 G++ TWL IAVN A+ Q R S ++++A E GA +I++ P L L Sbjct: 75 GEARLSTWLTSIAVNQARTRW--QQNRQKRSREESLDASAEEKQGAPLQIASEQPSALEL 132 Query: 124 SEE--LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E LR ++ R I +L + R + LR++ + Y+E+ ++ GTV+SR+FRAREA+ Sbjct: 133 LERSVLRGLLERCIRALDQGFREVLVLRDMREMPYDEMGQVLGLREGTVKSRLFRAREAV 192 Query: 182 DNKV 185 + V Sbjct: 193 RDCV 196 >UniRef50_A0LYR6 RNA polymerase sigma factor n=1 Tax=Gramella forsetii KT0803 RepID=A0LYR6_GRAFK Length = 195 Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 102/186 (54%), Gaps = 7/186 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 TDQ L+E+V GD AF LV RYQ+ V ++ R + + + +V Q++FIKAY +L SF Sbjct: 5 TDQYLIEKVLNGDTNAFGELVDRYQNFVFTIAIRILKVTEEAEEVAQDSFIKAYDSLSSF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGDS F TWLYRI + + + + +R + +++ E+ L I N MLS Sbjct: 65 RGDSKFSTWLYRIVYHKSLD-RIKMNKRHRTYEINEEVTED-----TLNHIENGLEFMLS 118 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E QI+ I LPE I+L L+ S +EI + D ++ +++R+R+ + + Sbjct: 119 AERTQIIKNCISQLPETEAAIISLYYLEEQSVKEIVKVTDLTEDNIKIKLYRSRKKLFSL 178 Query: 185 VQPLIR 190 ++ I+ Sbjct: 179 LEGYIK 184 >UniRef50_Q7WLV7 Putative RNA polymerase sigma factor n=2 Tax=Bordetella RepID=Q7WLV7_BORBR Length = 200 Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 15/173 (8%) Query: 14 VQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYT 72 ++ DQ+ + LV + ++ +++++ S DV D+ Q+AF +A RA SFRGDS T Sbjct: 25 TERSDQQLLSSLVAEHAGRLQRFIAKHIGHSSDVEDLAQQAFAEAARAYQSFRGDSQLST 84 Query: 73 WLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK----EISNPENLMLSEELR 128 WLY IA+N +N+L R P + F S +L NPE + + Sbjct: 85 WLYGIALNLVRNHLS----RAPERRYE------FTSDASLGVMPCSAPNPEAVTEQRQRM 134 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +++ +E LPE +R I + ++ LSYEE AA++ PVGT+RSR+ RAR A+ Sbjct: 135 RLLREALEQLPESMRDVILMVGVEELSYEEAAALLSVPVGTIRSRLSRARCAL 187 >UniRef50_D2QJ11 RNA polymerase, sigma-24 subunit, ECF subfamily n=12 Tax=Bacteroidetes RepID=D2QJ11_9SPHI Length = 190 Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 8/167 (4%) Query: 21 AFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAV 79 AFNLLV +YQ K+ + + V D D+VQE FIK + +L+ FRGDS YTW+YRIA Sbjct: 19 AFNLLVRKYQQKIYWHIRKMVIDHDDADDLVQETFIKVWNSLEQFRGDSQLYTWVYRIAT 78 Query: 80 NTAKNYLVAQGRR--PPSSDVDAIEAENFESGGA-LKEISNPENLMLSEELRQIVFRTIE 136 N N+L + RR P DV+ E ES A + S P EE++ + + + Sbjct: 79 NECLNFLNKKRRRFFLPIGDVEGELMEKLESNAAYVTSGSEPS----GEEVQMKLQKALL 134 Query: 137 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 LP+ R+ ++ D + YEEI+ I VG +++ A + I++ Sbjct: 135 KLPDKQRLVFNMKYFDDMKYEEISEITGTSVGALKASYHLAVKKIED 181 >UniRef50_B7KDZ7 RNA polymerase, sigma-24 subunit, ECF subfamily n=12 Tax=Cyanobacteria RepID=B7KDZ7_CYAP7 Length = 201 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 17/185 (9%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSA 69 L+ R Q+GD+ AF+ L RYQ KV+S + + + D+VQE FI+ ++ L R S Sbjct: 20 LIVRCQRGDRTAFHQLYRRYQQKVSSTLYQLCGREMLEDLVQEVFIRVWKGLPKLRQPSY 79 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE--- 126 F TWLYRI N A + GRR + + E E+ ++S+ E L S++ Sbjct: 80 FSTWLYRICWNVAVD-----GRRQFAKR----KQEKRETSTDKDDLSSLETLFRSQDTPD 130 Query: 127 -----LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + +V R +++L D R I L +L+ + +EIA I+ PVGTV+SR+ AR AI Sbjct: 131 LMQLHYQDLVQRGLQTLSLDHRAVIVLHDLEDIPQKEIAQILQLPVGTVKSRLHYARNAI 190 Query: 182 DNKVQ 186 +Q Sbjct: 191 KKFLQ 195 >UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDB7_RHOM4 Length = 198 Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 11/182 (6%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 SEQ D+ V +G++ A+ L+ +Y+ + ++R V D+ D+VQE FIKA+ A Sbjct: 9 SEQ--DRAFVAEALQGNEAAYQALMDKYRPALRRHIARIVRDPRDLDDLVQETFIKAFTA 66 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN--- 117 L ++ + AF TWLY+IA N A +YL + R S D E + G +E+++ Sbjct: 67 LSTYSTEYAFSTWLYKIATNHAIDYLRRKKLRTLSLD----EPIQTKEGTLERELADTTY 122 Query: 118 -PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 P+ ++ ++ R ++ I +LPE R I +R SYEEIA ++ P+GTV++ IFR Sbjct: 123 FPDRHIVEDQRRMLLQEAINALPEKYRRVIVMRHQQEKSYEEIAEELNLPLGTVKAHIFR 182 Query: 177 AR 178 AR Sbjct: 183 AR 184 >UniRef50_B7IH95 RNA polymerase sigma factor n=7 Tax=Thermotogaceae RepID=B7IH95_THEAB Length = 205 Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 7/174 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSA 69 ++ ++KG++ A+ L Y K+ + Y + DV DV+QE ++ Y+ + F+GDS+ Sbjct: 23 FIKALKKGEEWAYRRLYREYAPKIGAFARSYFGTDDVDDVIQEVMLRIYKGIKKFKGDSS 82 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 TW+YRI VN N L + ++ ++E N E + +I + E + E ++ Sbjct: 83 LSTWIYRITVNVC-NTLYEKYKKKNEKTF-SVENNNSEDDVEI-DIPDKETDVQKEVTQE 139 Query: 130 IVF----RTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 I++ + +E L E R+ I +R++DGLSY EIA I+ P GTV+SR+ ARE Sbjct: 140 ILYEKILKALEKLSEKERVLIRMRDIDGLSYSEIAEILGIPEGTVKSRLHNARE 193 >UniRef50_B8I824 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Clostridium RepID=B8I824_CLOCE Length = 184 Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 10/183 (5%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 LTD LV + GD AF +V+RY+ V S+V + + + V DV QE FI+ YR+LD Sbjct: 3 LTDAELVSQCVNGDSSAFEEIVIRYKRLVYSVVYKMISDKEEVHDVCQEVFIRLYRSLDK 62 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + + TW+ +I N + L + + + D DAI G EI PE ++ Sbjct: 63 YNPEFKMSTWIVKITSNLCLDTLRKKKQDTVTLD-DAI--------GVSSEIDTPEEALI 113 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + Q++ + ++ LP+ ++ I L G+SYEE+ I++ P+ +++R++RAR + Sbjct: 114 KHQRSQLIKKAVDELPDKYKVLIVLFHNRGMSYEEMTKILNEPMSIIKNRLYRARLMLKE 173 Query: 184 KVQ 186 K++ Sbjct: 174 KLE 176 >UniRef50_Q5YXA9 Putative sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YXA9_NOCFA Length = 192 Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 10/180 (5%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGD 67 LVER + GD +A+ LV+RYQ+++ L R + D D VQE F+ A+R L + Sbjct: 20 TLVERAKDGDVRAYEQLVLRYQNQMFRLALRMLGDRADAEDAVQEVFLGAWRRLSQLQDS 79 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 +AF WLYR+ N N + A R P++DVD AE+ + + P++ Sbjct: 80 AAFVGWLYRMTTNRCLNVIRA---RRPTADVDPDTAESPRTD------TRPDHAAQVNSQ 130 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 + + ++ L + R LRE+DGLSYEEIA I++ VR RI RAR + ++P Sbjct: 131 LAALNQALQRLTPEQRACWLLREVDGLSYEEIATIVETNTTAVRGRIARARAQLAEVMKP 190 >UniRef50_C1YP86 RNA polymerase, sigma subunit, ECF family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YP86_NOCDA Length = 187 Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 90/186 (48%), Gaps = 15/186 (8%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDS 63 L + VLVER Q GD +AF LV R+Q V + R + D D QEA I A+R L Sbjct: 12 LPESVLVERAQDGDDRAFEDLVRRHQDTVYRIALRVLRDPADARDAAQEALITAWRRLPE 71 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRP--PSSDVDAIEAENFESGGALKEISNPENL 121 +F WL RI A N L A RRP P D + +EA P Sbjct: 72 LADPQSFPAWLNRIVGRRALNMLRA--RRPVEPVEDDERLEARE----------PGPAGE 119 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L+ +LR+ + + LP R+ LRE++GL YEEIA I+D VR RI RAR + Sbjct: 120 TLAGDLREALLEALSGLPPPQRICWVLREMEGLGYEEIAEIVDTTPTAVRGRIHRARTHL 179 Query: 182 DNKVQP 187 ++P Sbjct: 180 VEALEP 185 >UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus RepID=Q1IW21_DEIGD Length = 194 Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 15/181 (8%) Query: 4 QLTDQVLVERVQKGD---QKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 +LTD LV + AF +LV R+ +V + + V G DVVQE F+ YR Sbjct: 15 ELTDAQLVPLAAHPGPYREAAFEVLVRRHAPRVHRIAAGTVGPGAADDVVQEVFVSVYRN 74 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L SFRG + F TWL+RI +N + L A+ + + + L NP Sbjct: 75 LASFRGQAQFTTWLHRITLNACQRALTAR------------QHLSLDEAPELPAPHNPVQ 122 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 +LR+ + + LP + R A+TLREL GL Y EIA ++ +GTV+SR+ R R A Sbjct: 123 TGEQADLRERLAWAMRQLPPEQRDAVTLRELSGLDYAEIAEVLGVELGTVKSRLNRGRAA 182 Query: 181 I 181 + Sbjct: 183 L 183 >UniRef50_C0QFM1 RNA polymerase sigma factor n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFM1_DESAH Length = 199 Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 3/179 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDS 63 L ++ L++ ++ G +KAF +LV RYQ ++ + V + ++VQ+ F+ YR + S Sbjct: 14 LDEKHLIKELKLGREKAFRVLVDRYQRRLLKVSYGIVLEEEESLEIVQDVFVTVYRQIGS 73 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE-ISNPENLM 122 FRGDS +TWL +I +N + N+ RR S + EA + A + I PE L Sbjct: 74 FRGDSRLFTWLVKITINLSLNWKRRWKRRFRWSH-SSFEAHDAPPVRASENRIETPETLY 132 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 EL + +E+LPE R+ L L+ LSY EIA +D +GTV+SR+F+AR+ + Sbjct: 133 RERELEADIMAAVETLPEKARVVFVLNTLEELSYGEIAQALDIKIGTVKSRLFQARKLL 191 >UniRef50_D2PPR8 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Actinomycetales RepID=D2PPR8_9ACTO Length = 181 Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 12/169 (7%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 +V RV+ GD A+ LV R+ +VA ++ + +G D DVVQE+F+KAYRAL FR DS Sbjct: 9 IVHRVRGGDSTAYAELVNRHA-RVAQRMAVLLGAGADADDVVQESFVKAYRALGGFRVDS 67 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 AF WL RI N +N + ++GRR ++ A+ E+ +P + LS E R Sbjct: 68 AFRPWLLRIVANETRNVVRSRGRRARREELAAVP----------DEVLDPAAVALSAERR 117 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 + + +++LPE R+ +T R L L +E A ++ P GTV+SR+ RA Sbjct: 118 RELLDALKALPEQYRLVVTCRYLLELDEQETATVLGWPRGTVKSRLHRA 166 >UniRef50_B3QZ33 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Bacteroidetes/Chlorobi group RepID=B3QZ33_CHLT3 Length = 266 Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 81/141 (57%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE 104 D D+VQE ++KAYR DSF + WL+RI N+ N + ++P D D I+ Sbjct: 108 DANDLVQETYMKAYRFFDSFEKGTNCKAWLFRILKNSYINRYRKESKQPDKVDYDDIKEF 167 Query: 105 NFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMD 164 + + ++ + + + + V R + SLPED R + L +++G +YEEIA ++D Sbjct: 168 YHTIRHSSSDSNDMQEKLFGNLMDEQVSRALNSLPEDFREVVQLCDIEGFTYEEIANMVD 227 Query: 165 CPVGTVRSRIFRAREAIDNKV 185 CP+GTVRSR+ R R+ + +K+ Sbjct: 228 CPIGTVRSRLHRGRKILRDKL 248 >UniRef50_Q8DM09 Group3 RNA polymerase sigma factor n=2 Tax=Cyanobacteria RepID=Q8DM09_THEEB Length = 201 Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 10/175 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRG 66 D+ L+E+ G K F L R+Q +V SL+ + + + D+VQE F++A++ L + Sbjct: 26 DRPLIEQCLAGHPKGFRELYQRHQQRVRSLLFQLCGAVALDDLVQEVFLRAWKGLKGLKH 85 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 ++ F TWLYRIA N A +Y R + + F + L+++ + Sbjct: 86 EAKFSTWLYRIAWNVACDYRRQLATRKSRHQQYLDQQQPFTTAPDLRQLHYED------- 138 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +V R + +LP + R + + +L GL +EIA I++ PVGTV+SR+FRAR ++ Sbjct: 139 ---LVQRGLATLPLEYRSILVMHDLQGLPQKEIAEILNIPVGTVKSRLFRARGSL 190 >UniRef50_C0Z9P5 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9P5_BREBN Length = 186 Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 12/178 (6%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 DQ V++V GD AF LV +Y+++V SL+ R S D D Q AF+ AY++L + Sbjct: 4 DQEWVKQVLGGDPHAFAHLVNKYKYRVCSLLVRMGNSPEDAEDFAQTAFVNAYKSLQQYD 63 Query: 66 GDSAFYTWLYRIAVNTA-KNYLVAQGRRPPSSDVDAIEAE-NFESGGALKEISNPENLML 123 F WL +IA+N + + AQ + P ++++A N+E NPE+ L Sbjct: 64 ASRPFSAWLNKIAINCCLQAWRTAQKKNPIVPFQESMKAHTNYE---------NPESFYL 114 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + E + +F + L R+ +TLR + LSY+EIA M PV TV+ ++RA++ + Sbjct: 115 AREKQNEIFAVMGELASHYRIVLTLRYFEELSYQEIAETMQVPVTTVQVHLYRAKKKL 172 >UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QYW7_CHLT3 Length = 317 Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 110/185 (59%), Gaps = 9/185 (4%) Query: 4 QLTDQVLVERVQKGD----QKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAY 58 +L D L++++ GD +A+ L+ +Y+ ++ +L+ + + + +V D+VQE F KA+ Sbjct: 124 RLEDYALIDQICDGDPHKRDQAYKRLLNKYRGQIFNLILKIIHNQNEVEDLVQETFSKAF 183 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVD-AIEAENFESGGALKEISN 117 ++++F + AF TWLYRIA N++ +YL + RR + +D I ++ E + + S Sbjct: 184 NSIENFNKEYAFSTWLYRIATNSSIDYL--RKRRLKTYSLDNPITTKDDEYTIEIPDSSE 241 Query: 118 -PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 P ++ + +V I++LP R I +R L +YEEIAA +D P+GTV++ IFR Sbjct: 242 EPGKNIMQSQRDALVRSAIKNLPPKYRKVIEMRHLQERTYEEIAADLDIPLGTVKAHIFR 301 Query: 177 AREAI 181 ARE + Sbjct: 302 AREML 306 >UniRef50_Q21I12 Sigma-70 region 2 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21I12_SACD2 Length = 179 Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 24/181 (13%) Query: 5 LTDQVLVERVQ-KGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYRA 60 ++DQ L+ RVQ GDQ AF+ LV ++Q +V S +R + +GD D+ QEAFIKAY A Sbjct: 3 ISDQTLIARVQANGDQHAFSQLVRKHQSQVRSW-ARRLCNGDEHLADDLAQEAFIKAYMA 61 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA---IEAENFESGGALKEISN 117 L +FRGD+ F WLYRI N A + + ++ ++D I AE E L + + Sbjct: 62 LAAFRGDAKFSVWLYRIVFNVAASKW--RKKKLDWCNIDEQPDIAAEACE----LHQFAA 115 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 E++ R ++ L E R+A+ L +G S++E A +M P+GT+++ + RA Sbjct: 116 SEDIT----------RAMQVLTEPQRIAVQLCFEEGFSHDEAAQVMGVPLGTLKTHVNRA 165 Query: 178 R 178 + Sbjct: 166 K 166 >UniRef50_C7PJ26 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJ26_CHIPD Length = 185 Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 L+ R+ GD KAF +LV +YQ V +V+R + + D D+ QE FIK ++ L F S Sbjct: 7 LIPRILHGDMKAFEVLVTQYQGLVFHVVNRIINTQEDKEDICQEVFIKVHQHLRRFEYKS 66 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 TW+ RIA TA NY S + IE +F +P L+ +++ Sbjct: 67 RLSTWIARIAYLTAINYSKKYSSGRTVSHPEDIENYSFTD-------EHPGGLLDKKDVT 119 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 V R I +PE R +TL L+ SY+EI I P GTV+S +FR R+ + +K+ Sbjct: 120 AYVNRLIAQMPEQYRTVLTLYHLNEFSYQEIEEITGMPEGTVKSYLFRGRKLLKDKL 176 >UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QRQ4_CHLT3 Length = 188 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 12/182 (6%) Query: 6 TDQVLVERVQKGD----QKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 +D L+ ++G+ +KAF L+ RYQ K+ + R + S D DV Q F+K Y A Sbjct: 3 SDHELIAEFKQGNAIRREKAFTELIRRYQEKIYWVCRRMLKSHDDADDVAQNVFVKIYHA 62 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 LD F S F+TW YRIA N + NY+ +Q R A+ + S A KE S+P+ Sbjct: 63 LDKFNEASQFFTWAYRIAANESINYMRSQKVR------QAVGLDTLMSEPAGKE-SHPDE 115 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + E +++ I LPE R +R + LSYEEIA + VG +++ F A + Sbjct: 116 HLEKTEQSKLIEEAIARLPEKQRKVFVMRYYEELSYEEIAESLGTSVGGLKANYFHAFKK 175 Query: 181 ID 182 I+ Sbjct: 176 IE 177 >UniRef50_A4FAV7 Putative RNA polymerase sigma factor n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FAV7_SACEN Length = 187 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 7/168 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 TDQ L+ Q+GD AF+ LV R+ + + R + S + D VQ+A++ A+R+L F Sbjct: 7 TDQALIAAAQRGDASAFDELVRRHTTTMYRVAVRILGNSSEAEDAVQDAWVSAWRSLKRF 66 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGD+A TWLYR+ N A L RR P+ +D + GG + +PE + Sbjct: 67 RGDAAPSTWLYRVVTNAA---LAQIRRRRPTVPLDV---SDEAVGGLFADHRDPEGQAVR 120 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 E +V R I +L R+ + L E +G+ YEEIA ++D +RS Sbjct: 121 NEEATMVHRAIATLEPSQRVPLVLHEFEGMGYEEIAEVLDVGAPALRS 168 >UniRef50_B2UN43 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B2UN43_AKKM8 Length = 197 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 9/176 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D L+ RV+ GD A +LV ++Q+ V + V+R + +G + D+ Q+ FI+ ++ ++ Sbjct: 15 DAKLMLRVRNGDASAMEMLVRKHQNSVYATVARMLNNGPETEDIAQQVFIRIWKGAGNYE 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGA---LKEISNPENLM 122 + F TW++ I N N + Q R+P +S DA+E E GG L+ P+ + Sbjct: 75 PSARFTTWMFTILRNLVFNEVRRQKRKPTTS-ADAME----EEGGMAVFLEPSQTPDEAL 129 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 EL+ V I +LPE R+A+ LR + + YEEIA +D V +S +FRAR Sbjct: 130 EHTELQHAVDAAIAALPEKARLAVQLRRFENMPYEEIARALDMTVPATKSLLFRAR 185 >UniRef50_A6LL38 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Thermotogaceae RepID=A6LL38_THEM4 Length = 203 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 97/171 (56%), Gaps = 2/171 (1%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSA 69 ++ ++KGD+ A+ L + K+ S Y + DV D+VQE + ++ + F+G+S+ Sbjct: 22 FIKALKKGDEWAYRRLYRDFAPKIGSFAKTYFGTDDVDDIVQEVMFRVFKGIKKFKGNSS 81 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLSEELR 128 TW+YRI +N Y ++ V+ + E+ E KE ++ + + SE L Sbjct: 82 LSTWIYRITMNVCNTYYEKYKKKNEKVFSVETDDTEDIEVDIPDKE-TDVQKEVESEILY 140 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + + +E LPE R+ I LR++D LSY+EIA I++ P GTV+SR+ AR+ Sbjct: 141 EKINKALEKLPERDRVLIKLRDIDELSYQEIADILNIPEGTVKSRLHNARK 191 >UniRef50_A4A074 RNA polymerase sigma factor, sigma-70 family protein n=3 Tax=Bacteria RepID=A4A074_9PLAN Length = 204 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 +T+ LV+ +Q GD AF LV Y ++ ++ R++ D D +Q+AF+ A+R++ Sbjct: 13 VTEAELVQGLQSGDPAAFERLVRDYSGRLLAVARRFLTQEQDAQDALQDAFLSAFRSISR 72 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP----- 118 F G+S TWL+RI VN + L + RR P +D + + SG ++ P Sbjct: 73 FEGNSQLSTWLHRIVVNASLMKLRTR-RRKPEKPIDDLLPQF--SGNGHRDGHEPAWAVT 129 Query: 119 -ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 + + E+R++V I LPE R + LR+++ +S EE A +++ G V++R+ RA Sbjct: 130 IDTAVNDREIRELVRTKIAELPESYRTVLLLRDIEQMSTEETAEVLELTPGAVKTRLHRA 189 Query: 178 REAIDNKVQP 187 R+A+ + P Sbjct: 190 RQALKTLLDP 199 >UniRef50_Q97E49 Specialized sigma subunit of RNA polymerase n=1 Tax=Clostridium acetobutylicum RepID=Q97E49_CLOAB Length = 190 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 104/180 (57%), Gaps = 10/180 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFR 65 D+ +++R +K D+ +F+ L Y+ + +L Y + D D+VQE +IK ++ + +F Sbjct: 4 DKEILKRCKKYDRASFSQLFHLYEKYLYNLCYGYTQNTSDAMDLVQEIYIKVFKNIKNFD 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE----NFESGGALKEISNPENL 121 + F+ W+ +I+VNT N+ +R +V ++ ++ FE L E N E Sbjct: 64 ENLPFHPWVRKISVNTCLNF-----KRDNRGNVMSLNSKYYDSEFEEEDRLAEDYNMEQE 118 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +++ ++V +I+ L D RM I LR + LSY+EIA+++D P+GTV+++I+RA+ + Sbjct: 119 VVNRINNEVVKESIKKLTYDYRMVIMLRYYEDLSYDEIASVLDMPIGTVKTKIYRAKNVL 178 >UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Verrucomicrobia RepID=B1ZXG6_OPITP Length = 247 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D LV R +GD+ AF ++ RY+ K+ ++ + + D ++ Q+ FI+A+R L +FR Sbjct: 31 DDELVRRFAQGDEAAFVEIMERYRGKIFTVTLGLLRNHADAEEITQDTFIRAHRGLANFR 90 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE-----ISNPEN 120 GDS+ TWLYRIAVN A+N RR + A + +S + + +P Sbjct: 91 GDSSLATWLYRIAVNLARNRYWYFFRRRRQDSLSLDCALSEDSAATFADLVADVVQDPAQ 150 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ++ E +V +E L R +TLR + SYEEIA + VGTV+SRI RARE Sbjct: 151 ETVAGEFSTLVDLCMEKLDARHREILTLRNVLNRSYEEIATTLGINVGTVKSRIARARE 209 >UniRef50_C4KZK8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KZK8_EXISA Length = 191 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 10/189 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRAL 61 E+LT + LV+ ++ G+ +F LV Y+ V ++ + + G+ D QEAFI+AY + Sbjct: 2 ERLTTR-LVDELRAGNHDSFAELVELYKDGVFAIAYKILYDRGEAEDAAQEAFIRAYTRI 60 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA----IEAENFESGGALKEISN 117 D++ F TWLYRI N A + L +R P +DA + ++ A E Sbjct: 61 DTYDAQYKFKTWLYRITTNVAIDRL---RKRKPEYSMDAEIAGTDGLTYQDHLA-DEAPQ 116 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P+ ++ E+R + I+ LP+ R+ + L+ +D LS +EI+ ++D PV TV++RIFR Sbjct: 117 PDAQVVHREIRSEMHEAIKQLPDKYRIPLLLKYVDDLSLKEISVMIDMPVATVKTRIFRG 176 Query: 178 REAIDNKVQ 186 RE + Q Sbjct: 177 REMLKTIFQ 185 >UniRef50_B5VYK7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Arthrospira RepID=B5VYK7_SPIMA Length = 263 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 10/195 (5%) Query: 3 EQLTDQVLVERVQKG---DQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAY 58 E+L++ LV R Q+G D+ AF L+ RYQ V ++ P D D+ QE +I+ Y Sbjct: 69 EKLSNYDLVLRCQEGLQPDRLAFTELLRRYQSHVDKILFHLAPDWQDRADLAQEIWIRVY 128 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-- 116 R + + + F WL RIA N + L + R P+ +DA + G E+ Sbjct: 129 RNIKRLQEPAKFQGWLSRIATNLFYDELRKRKRVRPALSLDA--PRTVDDGEMEWELPAD 186 Query: 117 --NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 P+ + + E + I LPE R I LRE+ GL+YEEIA I +GTV+SRI Sbjct: 187 RPGPDEDLATREFYDHLQEAIADLPEVFRTTIVLREIQGLAYEEIAEITGVSLGTVKSRI 246 Query: 175 FRAREAIDNKVQPLI 189 RAR+ + +++QP + Sbjct: 247 ARARQRLQSQLQPYL 261 >UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514 RepID=B9XPW8_9BACT Length = 205 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 13/193 (6%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFR 65 D L+ RV++GD AF LV +Y+ V ++V R + + + D+ Q FI+ Y++ + Sbjct: 8 DVALMLRVKRGDSDAFAELVEKYKQPVINVVFRILRDATEAEDLAQNVFIQVYKSAHRYE 67 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRP--------PSSDVDAIEAENFESGGALKEISN 117 + F TWL+ IA N N + + R P +SD + + + FE +K S Sbjct: 68 VSAKFSTWLFTIARNLCLNEIRRRSRHPADSLEANFTNSDNEDLPSRQFED---VKVYSA 124 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P+ L L EL V + ++ LPE+ R AI L + +SYEEIA ++ C + +S I R Sbjct: 125 PDTL-LQHELEHEVEQALKELPENQRTAILLCRQEDMSYEEIAKVIGCSLSATKSLIHRG 183 Query: 178 REAIDNKVQPLIR 190 RE + K++P ++ Sbjct: 184 RETLKQKLKPYLQ 196 >UniRef50_A5GDM9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GDM9_GEOUR Length = 202 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 23/194 (11%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPD---VVQEAFIKAYRALDS 63 D LV + G+ +F LV ++Q ++ ++ R +GD D V Q+ F+ A+R +DS Sbjct: 12 DAALVASWRSGELSSFEALVRKHQKRMLNIAFRI--TGDYEDACEVTQDVFVAAFRGIDS 69 Query: 64 FRGDSAFYTWLYRIAVNTAKNYL--VAQGRR-------PPS--SDVDAIEAENFESGGAL 112 FRG++ F TWL IAVN ++N L V RR PS D D + + AL Sbjct: 70 FRGEARFSTWLTSIAVNLSRNRLQQVQAKRRNEAYSLDGPSVGEDCDVVPERPSSAPSAL 129 Query: 113 KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 + + E L L E+L+ I++L + R AI LR+L SY+E+ AI+ GTV+S Sbjct: 130 ERL---ERLDLHEKLQG----CIKALTAEFREAIVLRDLQDFSYDEMCAIIKVREGTVKS 182 Query: 173 RIFRAREAIDNKVQ 186 R+FRARE + + ++ Sbjct: 183 RLFRAREMVKDCLK 196 >UniRef50_D2B9Q6 RNA polymerase sigma factor n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9Q6_STRRD Length = 194 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 14/174 (8%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQ---HKVASLVSRYVPSGDVPDVVQEAFIKAYRALDS 63 D + R GD A+ +LV RY H+ A+++ + + DVVQEAF+KAYR L + Sbjct: 19 DDEAIARSLAGDLAAYEVLVTRYSALAHRTAAMLG---AADETEDVVQEAFVKAYRHLAT 75 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 FR D+ F WL RI N N ++GRR A++ + GA PE++ + Sbjct: 76 FRRDAPFRPWLLRIVANETHNLTRSRGRRAEL----AVKLTELDPPGA----DGPEDVAV 127 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 + + R + + +LPE R + R LS E A ++D P GTV+SR FR Sbjct: 128 ATDRRARLLDVVRTLPEREREVVVCRYFLQLSEAETAQVLDLPAGTVKSRTFRG 181 >UniRef50_Q3APD6 RNA polymerase sigma factor n=10 Tax=Chlorobiaceae RepID=Q3APD6_CHLCH Length = 233 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 80/144 (55%) Query: 43 SGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE 102 + D D+VQE ++KAYR DSF + WL++I N N R P D DAI+ Sbjct: 72 ADDAEDLVQETYLKAYRFFDSFEKGTNCKAWLFKILKNNYINRFRKDTREPGFVDYDAIK 131 Query: 103 AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAI 162 + S E+ L + V++ ++SLPE+ R I L +++G +YEEIA + Sbjct: 132 DFYHTIKDVQSDTSETESDYFHSLLHEEVYQALKSLPEEFREVIQLCDIEGFTYEEIANM 191 Query: 163 MDCPVGTVRSRIFRAREAIDNKVQ 186 ++ P+GTVRSR++R R+ + +++ Sbjct: 192 VESPIGTVRSRLYRGRKLLHEQLK 215 >UniRef50_C0ZBY3 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBY3_BREBN Length = 189 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 21/181 (11%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFR 65 D +L+++VQKG++ A+ LV +Y+ ++ S + R D D+ QEAFIKAY LD ++ Sbjct: 4 DWLLIQQVQKGNRDAYAHLVDKYKERLYSYLYRMTGQQQDAQDLTQEAFIKAYCQLDKYK 63 Query: 66 GDSAFYTWLYRIAVNTA-----KNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 AF WLYRIA N KN A + P + IE++ PE Sbjct: 64 PTDAFLAWLYRIASNLCIDAWRKNKHYA---KTPLEETRLIESD------------TPEK 108 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L +E + + + I +L E+ R+ L+ L+ +SY+EI+ I+ PV TV+ RI A++ Sbjct: 109 AYLEKEKQDTLQQQIMALREEYRVVFMLKYLEQMSYKEISEILHVPVTTVQMRIHHAKKK 168 Query: 181 I 181 + Sbjct: 169 L 169 >UniRef50_Q01NU7 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NU7_SOLUE Length = 188 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 9/186 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D L+ + KG +++NLLV R++ ++ + + R + D D+ Q+ F+KAY+ L Sbjct: 8 DTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAYQNLRKLD 67 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + F WLYRIA N A Y + + RRP +DVD +E E E G I+ + + Sbjct: 68 DSARFAPWLYRIAHNEA--YSMFRKRRP-ETDVDELEPEATEIG-----ITVGGSSVFPV 119 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 EL V ++ L D R A+ L+ G +EE+A I+ CPV TV+SR++ A E + ++ Sbjct: 120 ELSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCPVSTVKSRLYTALELLKAEL 179 Query: 186 QPLIRR 191 P+ R Sbjct: 180 APVKAR 185 >UniRef50_Q1D378 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D378_MYXXD Length = 208 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 12/181 (6%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYRALDS 63 D L+ R+++G+ AF LLV +Q ++ R V GD D+VQE F+ ++ + Sbjct: 25 DAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMV--GDREEAHDLVQEIFVSVHQNVRR 82 Query: 64 FRGDSAFYTWLYRIAVNTAKN---YLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 FR DS TWL+RI N N YL +GR S D A E GG P+ Sbjct: 83 FREDSKLSTWLFRITRNHCINRLKYLKRRGR-GRSEVFDEAAALLSEGGGT---APGPDA 138 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + S R V I L D RM + LR+++GLSY+EI I + P GTV+SR+ RARE Sbjct: 139 ALESARERARVQWAISQLEPDARMLVALRDIEGLSYDEIIDITELPEGTVKSRLHRAREK 198 Query: 181 I 181 + Sbjct: 199 L 199 >UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB78_GEMAT Length = 200 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 19/195 (9%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDS 63 L D +V Q+G + AF LV RY+ V SLV R V + D+ Q++FIK +D Sbjct: 10 LPDADVVRLAQQGRELAFRELVRRYERPVFSLVYRMVRDRETAEDLAQDSFIKVLNHIDR 69 Query: 64 FRGDSAFYTWLYRIAVNTAKNYL-------VAQGRRPPSSDVDAIEAENFE----SGGAL 112 + + F +WL++IA N A ++L ++ P ++ +EA + E AL Sbjct: 70 YSPEFKFSSWLFKIANNVAIDHLRRRRVETISMDGSPHAATASEVEATSLELQSEQESAL 129 Query: 113 KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 EI ++EL + R I SL + R I LR ++G SYEEIA +D P+GTV++ Sbjct: 130 DEIE-------AKELGSAIERAIASLRPEYRACIMLRHVEGRSYEEIATTLDLPLGTVKT 182 Query: 173 RIFRAREAIDNKVQP 187 I RAR + ++P Sbjct: 183 YIHRARHELRRALEP 197 >UniRef50_B1ZWV8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZWV8_OPITP Length = 202 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 6/183 (3%) Query: 14 VQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDSAFYT 72 +Q GD A N L+ R+Q + S RYV S D D+V F++ Y+ R D+ Sbjct: 15 LQHGDTTALNRLIARWQRPLVSYAYRYVQNSADANDLVANVFVRLYQQRTRLRTDTNVAA 74 Query: 73 WLYRIAVNTAKNYLVAQGRRP-----PSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 WL+ N N+ + R P P ++ D E + + G + P+ L+ +E+ Sbjct: 75 WLFTALTNLCHNHHRWKRRHPTVPLEPVNNRDDGERSSGDFGEVASDRPGPDTLLAQDEV 134 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 V I+ LP DL++A+ L + LSY EIA I C + +R++RAR+ + + Sbjct: 135 AGAVRSAIDELPHDLKVAVLLHHYENLSYREIAEITSCSERGIETRLYRARQQLRQMLGH 194 Query: 188 LIR 190 LIR Sbjct: 195 LIR 197 >UniRef50_C1F7G4 RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7G4_ACIC5 Length = 223 Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 8/171 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D +LV + + GD +AF LV +Y +V + + D DVVQ+AF+KAY LD F+ Sbjct: 30 DVLLVNQARDGDVQAFEKLVRQYDRQVFRIAQHITQNREDAEDVVQDAFLKAYEKLDQFQ 89 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----NPENL 121 G+S FYTWL RI VN A L+ +R V E + G ++++ +PE L Sbjct: 90 GNSKFYTWLVRITVNEA---LMRLRKRRTGRMVSIDEDVETDEGSMPRDLADWSPDPEAL 146 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 E+ +I+ +TI+ LP R+ LR+++GLS EE A + V V+S Sbjct: 147 YGQSEMAEILRKTIQGLPPGFRVVFVLRDVEGLSTEETAESLGLSVPAVKS 197 >UniRef50_Q0VMH1 Rna polymerase sigma-e factor (Sigma-24) n=2 Tax=Alcanivorax RepID=Q0VMH1_ALCBS Length = 202 Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 M L +ER+++GD+ AF +V + + + + + + D + VQ+A+I AYRA Sbjct: 1 MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRA 60 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVD--AIEAENFESGGALK----- 113 + F G S TWL RI +N A+ L GR + +D A F G Sbjct: 61 IAKFEGRSLLRTWLTRIVINQARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQH 120 Query: 114 -EISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 +++ P+ L+ +ELR + +T+ +P++ R+ + LR+L G+ +++I ++D VR Sbjct: 121 WDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQGMDFDDICNMLDVSASNVRV 180 Query: 173 RIFRAR 178 + RAR Sbjct: 181 LLHRAR 186 >UniRef50_A9G8Q1 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G8Q1_SORC5 Length = 324 Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 92/178 (51%), Gaps = 18/178 (10%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSA 69 + R Q GD AF + RY+ VA LV R + P+ DV DV+QE FI+ +R+L FRG S Sbjct: 101 IRRFQSGDPTAFAEIFRRYRRDVARLVFRMLGPTADVEDVIQEVFIQVHRSLGDFRGQSK 160 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE--- 126 F TWL+R+ VN V RR A G +I ++ E+ Sbjct: 161 FTTWLHRVTVNA-----VLMARR-------AARCRPVFVGELGVDIEVDRGMLPDEDAAR 208 Query: 127 LRQI--VFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 R+I R +E LPE R+ L EL+G+ EIA I+ PV TVR+R+F AR I+ Sbjct: 209 ARRIDAFRRVLERLPEKKRVVYVLHELEGIPPNEIAEIVGAPVLTVRTRLFYARREIE 266 >UniRef50_C1ZG18 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZG18_PLALI Length = 211 Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 6/186 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFR 65 +Q L+ER++ G+++AF + V RY + + + R + D + +QEAF+ A+R + F Sbjct: 20 EQQLIERLRGGEREAFEMFVRRYCNPMYYVARRILRHDDDAREAMQEAFLSAFRKIHQFD 79 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP----ENL 121 S F TWL+RI VN A L + RR + +DA + E P E L Sbjct: 80 ARSQFSTWLHRIVVNAALKKLQVRERREKRT-IDAFLPTFTDDDHHRIEPRCPILSSEEL 138 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ELR+++ + I LPE R + LR+++GL EE A + V++R+ RAR+A+ Sbjct: 139 AQRNELRELLHQKINELPEIYRTVLLLRDIEGLDTEETAQSLQTTTDVVKTRLHRARQAL 198 Query: 182 DNKVQP 187 ++P Sbjct: 199 RTLLEP 204 >UniRef50_A6GAU3 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAU3_9DELT Length = 205 Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 14/185 (7%) Query: 5 LTDQVLVERVQKG-DQKAFNLLVVRYQHKVASLVSRYVPSGDVPD-VVQEAFIKAYRALD 62 ++D+ LV G D+ AF LV R+Q KV L+ R + D + QE F++AYR L Sbjct: 25 MSDEELVTLAGSGRDKSAFAELVRRHQGKVRGLLLRLSADPTLADDLAQEVFLRAYRGLV 84 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENL 121 F G S F TWLYRIA N N+ R S ++ A+ FES A E +P Sbjct: 85 GFEGRSRFSTWLYRIAYNVFLNH------RTRSKELAALPT-GFESQAAAPEGELSPSRF 137 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++R+ + I LPE R +TL L+ +SY EIA ++D P+GTV++ + RA++ + Sbjct: 138 ----DMRRDLAAAIAGLPERYRAVVTLYYLEDVSYPEIAEVLDLPLGTVKTHLHRAKKLL 193 Query: 182 DNKVQ 186 +++ Sbjct: 194 RERLR 198 >UniRef50_A6C0F8 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0F8_9PLAN Length = 211 Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 30/193 (15%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSF 64 +D LVE +KGD AF LV+RY+ ++ ++ ++V S D+ D+ Q+ F+K+Y LD F Sbjct: 23 SDARLVEAARKGDDSAFGELVLRYERRLIRVLIQFVKSPDLAEDLAQDTFLKSYERLDQF 82 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRR---------PPSSDVDAIEAENFESGGALKEI 115 F WL+RI VN A +YL Q RR P + D + Sbjct: 83 DTSRRFGPWLFRIGVNQALDYLRKQKRRGWWLLFSDSPSDTPFDP-------------SV 129 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 +P N + ++ Q V +E +PE R + LR+L+ S EIAAI+D T+R R+ Sbjct: 130 PDPRNKL---DINQEVQAILEEIPEKYRTVLVLRDLENFSTSEIAAILDRKEATIRWRLA 186 Query: 176 RAREAIDNKVQPL 188 AR N+ Q L Sbjct: 187 EAR----NRFQKL 195 >UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QW1_RHOFD Length = 187 Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 9/172 (5%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSA 69 V R + GD+KAF+ LV R+Q V + R + S D ++ QEAFIKA++AL +R ++ Sbjct: 15 VSRARAGDRKAFSELVRRHQKPVHRYLLRMLGSHDDAMELTQEAFIKAWQALPQWRPEAQ 74 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F TWL+RIA NTA + L R + +E ++F++ G+ E +++E+RQ Sbjct: 75 FRTWLFRIANNTALDAL----RHRKLIEFVPLE-DSFDAPGS--EPDPAHQAQVTQEVRQ 127 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + +PE R + LRE++ +SYEEI +++ GTV+SR+ RAR A+ Sbjct: 128 LDTSLKKLMPEH-RQILLLREVEEMSYEEIGSVLSLNEGTVKSRLARARAAL 178 >UniRef50_B3PJQ3 RNA polymerase sigma factor n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJQ3_CELJU Length = 182 Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 22/187 (11%) Query: 7 DQVLVERV-QKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP---DVVQEAFIKAYRALD 62 DQ L+ RV + DQ AF LV+RYQ ++ + +R + +GD D+ QE FIKAY AL Sbjct: 5 DQELIARVVNRKDQHAFAQLVLRYQSQLRTW-ARRLCNGDTHLADDLAQETFIKAYAALG 63 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +FR ++ F TWLYRIA N A N R S ++ E + E E + + Sbjct: 64 AFRAEAKFSTWLYRIAFNVAAN-------RWRSKKLEWCELDENE------ETEADQCSL 110 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 ++ V + L ++AI L DG S+EE AAIM P+GTV++ I R ++ Sbjct: 111 QQFHAQKDVEAAMRMLSAGQQLAIRLCYEDGFSHEEAAAIMGIPLGTVKTHIARGKQ--- 167 Query: 183 NKVQPLI 189 K+Q L+ Sbjct: 168 -KLQTLL 173 >UniRef50_C0XTG6 RNA polymerase sigma factor n=2 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XTG6_9CORY Length = 187 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 18/185 (9%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 +L+DQ LVE + GD +AF +V R++ ++A + RY + D D++QEA KA R + Sbjct: 2 ELSDQQLVEAYKAGDPQAFAAIVRRHKPRLAYIARRYARNEQDTQDILQEALFKASRKMH 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 ++R ++ TWL+R+ +N+ +Y+ A +R +D + IS N M Sbjct: 62 TYRSEATLSTWLHRLVMNSGYDYMAAGQKRIRDISIDDSD-----------RISVDANPM 110 Query: 123 LSEEL-----RQIVFR-TIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 LS + R IV R IE+LP R A+ L ++ GL+ E A M GTV+SR R Sbjct: 111 LSHDPTPAVDRAIVMRQAIEALPAAQRTALLLIDVAGLTVENAAREMGVKPGTVKSRRSR 170 Query: 177 AREAI 181 AR+A+ Sbjct: 171 ARDAV 175 >UniRef50_Q1CYD9 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Cystobacterineae RepID=Q1CYD9_MYXXD Length = 217 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 9/192 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D+ L+ R Q GD AF LV ++ KV L R S D ++ Q+ F+ AY+ L FR Sbjct: 23 DRQLLARAQDGDVSAFEALVDAHRDKVYGLALRMTRSEADAAEITQDTFLSAYQHLKDFR 82 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI------SNPE 119 GD+AF +W++RIA N A L + RR + ++ F G+L + + E Sbjct: 83 GDAAFGSWVHRIAANHALMRL--RHRRVAQAAEQELQGPEFTERGSLADYPQTDWSRDAE 140 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L EL + + + LPE R L++++GLSYE+IA + ++SR+ RAR Sbjct: 141 EKALDAELGSAIQQASDRLPEGYREVFLLKDVEGLSYEQIAEATGDSIPAIKSRLHRARL 200 Query: 180 AIDNKVQPLIRR 191 A+ + R Sbjct: 201 ALREAIDAFYNR 212 >UniRef50_B9XG21 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XG21_9BACT Length = 200 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 9/178 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKV-ASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 +D+ LV +KG+ AF LV R++ K+ A S + D+ QEA++K+++ L F Sbjct: 11 SDEQLVRAAKKGEMAAFEELVARHRDKIYARAFSMMRNEEEAVDLCQEAWVKSWQRLQQF 70 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----NPEN 120 +GDS+F TW+ RI +N + L R+ ++IE + ESGG +++ NP Sbjct: 71 QGDSSFGTWMTRIVINLCLDQL----RKRKRQRTESIEEMSEESGGVERQMPTVTINPTE 126 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + ELR+ + + + L + R + L E + + Y+EIA M C +GTV SR+F AR Sbjct: 127 RLERAELRKRIDQALSQLSHEHRTVLVLHEFEEMEYKEIAKTMGCSIGTVMSRLFYAR 184 >UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira RepID=Q04U83_LEPBJ Length = 207 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 100/174 (57%), Gaps = 14/174 (8%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 L++++++GD +A+ LV ++ ++ V GD D+VQ+A I YR++ +FR DS Sbjct: 27 LLKKIKEGDDEAYIQLVNPFRERLYRKAVSMVKDGDDAEDIVQDALISGYRSIRNFRADS 86 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK---EISNPENLMLSE 125 YTWLYRI VN +K+ ++A+ +R + +D E + + + E+S+ N ++S+ Sbjct: 87 GVYTWLYRIVVNKSKD-MLAKRKRAKENSMDDKEYQVTDDRVGFEKKIELSDESNYLISK 145 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 I L + + I LR + +SY +IA ++ VGTV+SR+F+A+E Sbjct: 146 ---------INGLEDLYKEVIELRYFEEMSYAQIAEVLGTNVGTVKSRLFKAKE 190 >UniRef50_Q73K99 RNA polymerase sigma-24 factor, putative n=1 Tax=Treponema denticola RepID=Q73K99_TREDE Length = 213 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 11/185 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASL-VSRYVPSGDVPDVVQEAFIKAYRAL 61 E + D++L + V G+ +AF+L+ +YQ +V SL +S + D D VQ+ +K + AL Sbjct: 14 EAVQDRLLCKAVLAGNTEAFSLIAAKYQKRVYSLGMSFFKNHDDSEDFVQDIMLKTFSAL 73 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FRG+S+F TWL RIA N+A N + + +R S D E + + PE Sbjct: 74 PKFRGESSFSTWLMRIAYNSAINSV--KRKREFVSAFDDFEIKTND--------LTPEER 123 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++ + R + LPE R+ I L + Y +I +I PV T++S IFR+++ + Sbjct: 124 QIQNCVKNAIRRAVNDLPEKYRICIDLYFFYDMPYADIESITGIPVNTIKSHIFRSKKIL 183 Query: 182 DNKVQ 186 +++ Sbjct: 184 KTELE 188 >UniRef50_C5D220 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Comamonadaceae RepID=C5D220_VARPS Length = 241 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 12/183 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 Q +D+ L R +GD AF ++ R+ + + S + D +Q+A+++A+RA+ Sbjct: 17 QSSDRELAARAAQGDAPAFECIMRRHNQLLFRTARSILKSDEETEDALQDAYLRAWRAIG 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRR--PPSSDVDAIEAENF-----ESGGALKEI 115 SFR D+ TWL RI +N A L +G + P +D A F E A Sbjct: 77 SFRDDAQLSTWLVRIVINEALGRLRRRGAQVIP----LDGAAAPGFDEDEPEWAAADDPD 132 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 PE + EELR+++ R I+ LP+ R LR ++ +S EE AA + P TVR+R F Sbjct: 133 KQPERHAMREELRRLMERRIDRLPDAYRTVFMLRAVEEMSVEETAAALALPEATVRTRFF 192 Query: 176 RAR 178 RAR Sbjct: 193 RAR 195 >UniRef50_A5FKW0 RNA polymerase sigma factor n=4 Tax=Flavobacteriales RepID=A5FKW0_FLAJ1 Length = 195 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 99/178 (55%), Gaps = 7/178 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + DQ ++++ +G+ AF +LV RY+ + +L + V + + +V Q+ FIK Y +L+ Sbjct: 4 INDQHYIDKILQGETNAFAVLVDRYKDMIFTLALKMVKNREEAEEVAQDTFIKIYSSLNK 63 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F+GDS F TW+Y+IA NT + L ++ D++ I ++F S +K + N + + Sbjct: 64 FKGDSKFSTWIYKIAYNTCLDRL----KKSKKEDLN-ISIDDF-SSHLIKTMDNALSTLE 117 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +E +Q + + + LP + +TL D + EEI IM+ + ++FR+R+ + Sbjct: 118 EKERKQTIQKCLNLLPNEENFLLTLFYFDDQNLEEIGKIMNISANNAKVKLFRSRQKL 175 >UniRef50_Q1IJV0 Sigma-24, ECF subfamily n=2 Tax=Acidobacteria RepID=Q1IJV0_ACIBL Length = 241 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 24/198 (12%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV--PSGDVPDVVQEAFIKAYRALDSFRG 66 +V ++ G + A++ L+ +Y + SLV R + PS D D QE FIK +R + F Sbjct: 21 AIVAELKAGSEDAYSWLIAQYNQPIYSLVYRILDDPS-DAADTTQEVFIKVFRGIKRFNS 79 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML--- 123 +S+ TW+YRIA++ A N RR A EA + E+G +E S+P L Sbjct: 80 ESSLKTWIYRIALHEASN------RRRWFFRHKAKEA-SIEAGPETEEHSHPIGLKDTLV 132 Query: 124 --SEELRQIVFRT---------IESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 SE VF T +++L E R + LR+++ LSYE+IA I + +GTV+S Sbjct: 133 DDSESPFDTVFHTEVSAKVEEELKNLQEPYRTTVILRDIEELSYEQIAEITETSLGTVKS 192 Query: 173 RIFRAREAIDNKVQPLIR 190 R+ R REA+ ++ ++ Sbjct: 193 RLVRGREALKKRLTRYVK 210 >UniRef50_B8GD43 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Chloroflexi (class) RepID=B8GD43_CHLAD Length = 203 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 10/177 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEA-FIKAYRALDSFR 65 +Q L+ Q GD AFN LV Y+ ++ +L R + D + FI A+R L SFR Sbjct: 5 EQRLIRSAQTGDLDAFNQLVRLYETRIYNLCYRMLGDADAAADATQDAFIAAFRNLRSFR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP----ENL 121 G + F WL RIA N + L A+ RRP S + E G E+ +P ++ Sbjct: 65 GGT-FKAWLLRIATNACYDVLRARKRRPAVSLEREHDEEERHRG----ELPDPGESLDDT 119 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 M+ +EL + R + LP+D R+ I L ++ GL+YEEIA + +GTV+SR+ RAR Sbjct: 120 MVRQELGAAIQRALAELPDDQRIVIILSDIQGLAYEEIARVTGVQLGTVKSRLSRAR 176 >UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AX4_SOLUE Length = 236 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 16/180 (8%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 DQ LV R GD+ A+ LV ++ +V L R+ S + D+ QE F++ ++ + +FR Sbjct: 51 DQSLVSRCLGGDEAAWEELVRQHTRQVYGLCFRFTNSAQEAQDLTQEVFLRVFKTIKTFR 110 Query: 66 G-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV-DAIE-----AENFESGGALKEISNP 118 + +F TWL R+ +N L+ RR V D+IE E + GA + P Sbjct: 111 STEGSFGTWLARVT----RNLLIDHYRRTRQQRVTDSIEDQLPVLEQVGTSGA----ARP 162 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + E +I+ T++ L DLR A+ LR+L + Y EIA ++D P GTV+SRI R R Sbjct: 163 DQALAGREASEILQATLQKLSPDLREAVILRDLQEMEYREIADVLDIPEGTVKSRINRGR 222 >UniRef50_A5CQL0 RNA polymerase sigma factor n=4 Tax=Actinomycetales RepID=A5CQL0_CLAM3 Length = 274 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 6/139 (4%) Query: 44 GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEA 103 D D+VQE F+KAY A F+ + WLYRI NT N + R P + +D E Sbjct: 112 ADAQDLVQETFVKAYTAFHQFKQGTNLKAWLYRILTNTFINNYRKKQRDPYNGTID--EL 169 Query: 104 ENFESGGALKEISNPENLMLSEELRQIVFRTI----ESLPEDLRMAITLRELDGLSYEEI 159 E+++ GGA + +E + + T+ +S+PED RMA+ +++G SY+EI Sbjct: 170 EDWQLGGATSATATTTRSAEAEAIDHLPDSTVKDALQSIPEDFRMAVYFADVEGFSYQEI 229 Query: 160 AAIMDCPVGTVRSRIFRAR 178 A IM PVGTV SR+ R R Sbjct: 230 ADIMKTPVGTVMSRLHRGR 248 >UniRef50_C7RD23 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RD23_KANKD Length = 182 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 8/175 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDS 63 + D LV+RV + +F+ LV +YQ V +VS+ V S D ++ QE F++ Y L Sbjct: 1 MNDLTLVKRVLNNEPGSFDELVKQYQKLVWHIVSKLVQNSEDTLELSQEVFLQVYNKLGQ 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 ++G S TW+ RIA + A +L Q R+ D++ EN KE+ N Sbjct: 61 YKGGSQLSTWIGRIAYHFAVRFLQKQDRQLDEVDIETEAVENETGNSQHKELQN------ 114 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 +L+Q + ++ LP + I+L L+ L+ EI+ I + P GT++S +FRAR Sbjct: 115 -RQLKQQMHTAMKQLPVIQQTIISLYHLEELTLSEISEITELPQGTIKSHLFRAR 168 >UniRef50_Q7NFE2 Glr3584 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFE2_GLOVI Length = 187 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 12/179 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 Q++D+ LV R + D +AF L RY KV L+ + + + + D+ QE F+K ++AL Sbjct: 9 QVSDEQLVWRASRSDGQAFRELYRRYVSKVRGLLYQMMSDIESLDDLTQEVFVKVFKALP 68 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 FRGD+ F TWL+RIAVN ++ + RRP + +D L + E+ + Sbjct: 69 GFRGDAQFSTWLFRIAVNCCQDARRRRARRPMAVPID-----------NLPLAARGEDPL 117 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + Q+V + + +L E+ R + L +L +EIA +++ PVGTV+SR+F AR + Sbjct: 118 GRLDREQLVSQALATLKEEHRDVVILHDLHDRPQDEIAKLLNVPVGTVKSRLFYARRQL 176 >UniRef50_B4RD59 RNA polymerase sigma factor n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RD59_PHEZH Length = 238 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 11/181 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDS 63 L++ LV R + GD AF ++ ++ V + DVVQEA+ KA++ LD Sbjct: 18 LSEVELVGRARGGDAAAFRAIMQASNQRLFRTARSIVRDESEAEDVVQEAYAKAFQHLDG 77 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESG------GALKEISN 117 FRG++ TWL RI VN A+ L +R D+ AIE E+G GAL + Sbjct: 78 FRGEARILTWLTRIVVNEARGRLR---KRRTMVDLSAIEQAQGEAGRVVMFPGALA-AGD 133 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 PE E+R+++ R ++ LPE LR+ LRE++ S E A + TV++R+ RA Sbjct: 134 PEREAARAEMRRLLERALDGLPEPLRLVFILREIEDCSVAETAQALGVRAETVKTRLHRA 193 Query: 178 R 178 R Sbjct: 194 R 194 >UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4L0_BREBN Length = 185 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 103/180 (57%), Gaps = 10/180 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFR 65 D+ ++ V +G+++A+ L+V +Y+ K+AS++ R + S D D+VQE FIKAY +L ++ Sbjct: 4 DREVIAEVLQGNKEAYALIVNKYKGKIASILQRTLHHSHDAEDMVQEVFIKAYYSLPDYK 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + +F WLYRIA+N + L + R P +++D +E ++ E PE L + Sbjct: 64 PNCSFSAWLYRIAINRGIDELRKRKRMPSVTEMD-VEVKD--------ECPIPEEDYLEK 114 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E R + + + +L ++ R + L L LSY EI + V TVR R+ AR+ + +++ Sbjct: 115 EQRHALRQQMMTLDKNHRAILDLHYLQHLSYREIGNKLSLSVDTVRMRLSYARKKLRDQL 174 >UniRef50_A0LD14 RNA polymerase sigma factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD14_MAGSM Length = 210 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 7/176 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D +++ G +A+ L+V R Q +V V R++ S D D+ QE F++AYR L F+ Sbjct: 15 DAAHLKQALNGHPEAYALVVRRLQVRVYHFVLRHIHSPEDAEDLTQETFLEAYRNLSRFQ 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S F TWL IA N A+N+ +GR P D + E + P + Sbjct: 75 GNSLFSTWLLGIAHNMARNF---RGR-APHYRYDITDDSVLEYTS--DDRPTPHDYADEA 128 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + +++ R +E LPE+ R A+TL L+ LSYEE A + D + +++R+FRAR+ + Sbjct: 129 DRMKLLKRAMEQLPEEQREALTLISLEELSYEEAAVVADISLSALKTRVFRARKHL 184 >UniRef50_Q7UFL5 RNA polymerase sigma factor n=1 Tax=Rhodopirellula baltica RepID=Q7UFL5_RHOBA Length = 211 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 7/185 (3%) Query: 6 TDQ-VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 TD+ L+E GD AF LV+R+Q ++ + S D +V QEAFI+A+ LD+ Sbjct: 19 TDEGALIEAALSGDASAFEGLVIRHQDRLHHAMIHVTGSVHDAEEVTQEAFIRAFVKLDT 78 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F+ +S F+TWLYR+A N A + Q R E GG + + M+ Sbjct: 79 FQQNSQFFTWLYRVAFNIALSRKRRQKVRLSLDQQREEIGEEVVCGGEAVDAN-----MI 133 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ++ +V + L ++ R + LRE++ SYEE+A I++ +GTVRSR+ RAR+ + Sbjct: 134 RQDDVSLVQLALRQLSDEHRSILVLREMNESSYEEMAEILELSIGTVRSRLNRARKQLRL 193 Query: 184 KVQPL 188 ++ L Sbjct: 194 AIEQL 198 >UniRef50_D1CFG7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFG7_THET1 Length = 204 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 18/160 (11%) Query: 44 GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI-E 102 D D+VQE ++KA+R DSF+ + WL+RI NT N + R+P ++++ + E Sbjct: 38 ADAEDLVQETYLKAHRFRDSFKPGTNLRAWLFRILTNTFINDYRKKSRQPQTTEMGELGE 97 Query: 103 AENF-------ESGGALKEISNPE----NLMLSEELRQIVFRTIESLPEDLRMAITLREL 151 E++ E+G +L E +PE N+ + EE+R+ ++SLPE R+ + L ++ Sbjct: 98 MEDYYLFRRVKEAGESLGE--DPEQTVLNMFVDEEVRE----ALDSLPEQYRLPVLLADV 151 Query: 152 DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 +G SY+EIA ++ PVGTV SR+ R R+ + K+ R+ Sbjct: 152 EGFSYKEIADVLGIPVGTVMSRLHRGRKQLQQKLWEYARQ 191 >UniRef50_A6CI15 RNA polymerase sigma-70 factor n=3 Tax=Bacillaceae RepID=A6CI15_9BACI Length = 175 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 8/159 (5%) Query: 29 YQHKVASLVSRYVPSGDV-PDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 Y ++ L YV D+ D+ Q +F+K Y+ LDSFRGDS TWLYRI +N K++L Sbjct: 17 YGDELVRLAYSYVKDADIAKDITQNSFVKCYKKLDSFRGDSKIKTWLYRITINECKDHLK 76 Query: 88 AQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAIT 147 + + +D I+ EN +S ++ + E +L E Q + + SLP+ R I Sbjct: 77 SWNHKKVQV-LDYIQ-ENTKS-----QLPSAETTVLKEAKNQQIKNIVLSLPKKYREVIH 129 Query: 148 LRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 L + L+ EE+A + D V TV++R+ RA++ + K++ Sbjct: 130 LYYFESLNIEEVAEVTDLAVNTVKTRLRRAKQRLKIKLE 168 >UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobacteria RepID=P73431_SYNY3 Length = 223 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 7/186 (3%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGD 67 +L ++ + D AFN L+ RYQ V ++ P D D+ QE +I+ YR + Sbjct: 38 LLCQQKTRPDSTAFNELLRRYQSHVDKILYHLAPDWQDRADLAQEVWIRVYRNIHRLNEP 97 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN----PENLML 123 F WL RIA N + L + R +DA + G +I + P+ + Sbjct: 98 VKFKGWLSRIATNLFYDELRKRKRVSHPISLDA--PRRMDDGEIDWDIESDYPSPDETLS 155 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + E + + I+ LPE R I LRE+DGL+YEEIA I +GTV+SRI RAR + Sbjct: 156 TAEFYECLRSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIARARAKLQT 215 Query: 184 KVQPLI 189 +QP + Sbjct: 216 FLQPYL 221 >UniRef50_Q01Q68 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q01Q68_SOLUE Length = 212 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 90/173 (52%), Gaps = 8/173 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + + LV + ++GD AF LV RY+ K+ L + D DV+QE+F+KAY L+ Sbjct: 15 IEESALVTQAREGDTAAFAELVRRYEGKIFRLAQHITQNREDAEDVLQESFMKAYEHLEQ 74 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----NPE 119 F+GDS FYTW+ RIAVN A L+ RR V E + ++EI+ +PE Sbjct: 75 FKGDSKFYTWIVRIAVNQA---LMKLRRRKTDKSVSIDETIDTGEDTVVREIAAWGEDPE 131 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 EEL I+ + IE L R LR+++ LS EE A + V V+S Sbjct: 132 QSFSREELGSILDKAIEGLEPLYRSVFVLRDIEELSTEETAEALGLSVPAVKS 184 >UniRef50_A6G4F0 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G4F0_9DELT Length = 201 Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 6/137 (4%) Query: 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGR-RPPSSDVDAIEAENF 106 D+VQ++ ++AYR D+F+ + W++ I NT N +GR R +DV A + + Sbjct: 21 DLVQDSMVRAYRFWDTFKQGTNIKAWMFTILRNTFINGYHRRGRKRSFQNDVSA-QVRSL 79 Query: 107 ESGGALKEISN----PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAI 162 G A+ ++ PE + S + ++SLP D R+A+TL +L+GLSY+EIA + Sbjct: 80 GPGVAVAHSTSQPPGPEEAVASRVTSARIREALDSLPPDYRLAVTLADLEGLSYKEIAEV 139 Query: 163 MDCPVGTVRSRIFRARE 179 MDCP+GTV SRI+R R+ Sbjct: 140 MDCPIGTVMSRIYRGRK 156 >UniRef50_B9XQJ1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XQJ1_9BACT Length = 183 Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 15/173 (8%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 ++V + + ++GD +AF L+ YQ + +L R S D D+ Q+ FI+A+R + ++R Sbjct: 7 EKVWIGKSRQGDHEAFEALIKCYQKMIHALTYRMTGSLTDGEDLAQDTFIQAFRQIHTYR 66 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 GDS F +WLYRI +N N+ +Q R+ + + E G L + P+ Sbjct: 67 GDSKFSSWLYRIGINLCLNWRKSQQRQQKAHE---------EYGQNLDTETTPDG----- 112 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + Q V + L R AI L DGL++ E A ++ C TV RIF AR Sbjct: 113 KRAQQVQEALMKLRPKQRAAIVLTTYDGLNHAEAAQVLGCSETTVSWRIFAAR 165 >UniRef50_A8TRK4 Sigma-24, ECF subfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRK4_9PROT Length = 216 Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGD 67 LV R++ GD++AF +LV R ++ + R V D VQEAF+ A+RA+ SF Sbjct: 26 ALVARLKAGDERAFEILVRRESGRLLAAARRLVRDEAAAHDCVQEAFLSAFRAIGSFEPR 85 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-----SNPENLM 122 S+ WL+RI +N A L Q RR + +D + +F++ G ++ +PE+ + Sbjct: 86 SSIGAWLHRITINAALMRLRKQ-RRLAETPIDDL-LPSFDADGWRRDTVDVPDGDPESEL 143 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +R V I+ LP+ R A+ LR+L+G S +E A + G ++ R+ RAR + Sbjct: 144 ERRRVRDFVRGKIDMLPDGYRTALVLRDLEGWSTKEAADALGIAEGAMKVRLHRARSTLK 203 Query: 183 NKVQPL 188 ++PL Sbjct: 204 RLIEPL 209 >UniRef50_Q2BEM6 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BEM6_9BACI Length = 213 Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 10/177 (5%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 +++V G+++A+ ++ +Y++ + + + R + D D+VQEAFIK Y L + A Sbjct: 33 IKQVLAGNKQAYGHIINKYKNPLYATILRMTKNPQDAQDLVQEAFIKIYNQLGKYDQKGA 92 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F +WLYR+AVN + + + ++++ A N +PE ++L +E + Sbjct: 93 FSSWLYRVAVNHCMDEFRKKSSQIKQAEINEASAVN---------TKHPEVILLKKEKNR 143 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 V + I +LPED R+ I LR + L YEEIA P+ VR+++ RA++ + V+ Sbjct: 144 QVEKLISTLPEDERIIILLRYANELPYEEIAETTGMPLSMVRNKLHRAKKKMRETVK 200 >UniRef50_B4UK08 RNA polymerase sigma factor n=7 Tax=Cystobacterineae RepID=B4UK08_ANASK Length = 214 Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 4/137 (2%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYL---VAQGRRPPSSDVDAI 101 D D+VQ+ F++AYR D F + WL++I NT N V + S+ DA+ Sbjct: 38 DAEDLVQDTFLRAYRFFDKFERGTNIKAWLFKILTNTFINRYRRSVKERNIVEGSERDAV 97 Query: 102 EAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAA 161 E F S A + +NPE L V + ++SLP D RM + L +L SY+EIA Sbjct: 98 H-ERFVSREAAEYAANPEQYFFDRLLSDDVLKAVDSLPIDFRMVVILADLQEFSYKEIAE 156 Query: 162 IMDCPVGTVRSRIFRAR 178 I+D PVGTV SR++R R Sbjct: 157 ILDVPVGTVMSRLYRGR 173 >UniRef50_Q1AVA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVA8_RUBXD Length = 166 Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%) Query: 13 RVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDSAFY 71 R + GD+KAF+ LV R+Q V + R + D D VQEAF++ + L SF G S+F Sbjct: 3 RARSGDRKAFSELVRRHQTAVYRVCYRVLGDPEDARDAVQEAFVRCFTKLGSFEGRSSFK 62 Query: 72 TWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIV 131 TW+ R+A+N + N A+ E + S PE+ +L +E + V Sbjct: 63 TWMLRLAINVSLNERKARA-----------RPLPPELREPPADPSGPEDDLLRKEAAERV 111 Query: 132 FRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 R + L + R A+ LR+L+G+S+ E+A ++ P T RS +R R+ + + V Sbjct: 112 HRALRLLQPNHRAAVVLRDLEGMSHAEVAEVLGVPEATARSWAYRGRQRLKDLV 165 >UniRef50_C0WH96 RNA polymerase sigma factor n=3 Tax=Corynebacterium RepID=C0WH96_9CORY Length = 182 Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 10/183 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 +S +D+ LV+ +GD KAF+ +V R++ ++ ++ RY + D DVVQEAF++A Sbjct: 3 LSPDHSDEELVDAFIEGDNKAFSAIVERHRKRLTTVARRYTRNEYDAQDVVQEAFLRASC 62 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP- 118 L ++R +SA TWL+R+ NT +YL + R +S +++++F NP Sbjct: 63 NLHNYRRESALSTWLHRLVKNTGYDYLNHRANRENAS----LDSDDFADDRNPLLAHNPS 118 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 EN L+E+L +V +E L +D R A+ L ++ G E+A GTV+SR RAR Sbjct: 119 EN--LAEQL--VVREAMELLRQDQREALMLTDVAGFRVNEVATAQGVKPGTVKSRRARAR 174 Query: 179 EAI 181 E + Sbjct: 175 EVL 177 >UniRef50_D1C360 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C360_SPHTD Length = 204 Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE 104 D D+VQE +++A+R+L FR + WL++I N N + RRP S+ +D +E Sbjct: 37 DAEDLVQETYLRAFRSLHQFRPGTNLRAWLFKILTNAFINDYRKRSRRPRSTSLDNVEDY 96 Query: 105 NFES----GGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA 160 S G + PE+ +L+ + V +ESLP++ R + L +++G SY EIA Sbjct: 97 YLYSHLIDSGIQPASTRPEDEVLANIPDEAVIAALESLPDEFRQVVLLADVEGFSYREIA 156 Query: 161 AIMDCPVGTVRSRIFRAREAIDNKV 185 IM PVGTV SR+ RAR + + Sbjct: 157 DIMSTPVGTVMSRLHRARRRLQGAI 181 >UniRef50_D0LTI3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTI3_HALO1 Length = 228 Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 9/181 (4%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 ++++D L GD+ A ++L+ RY K++ + + GD V D+VQ+ +RA Sbjct: 44 GDEVSDAELFASWAAGDKHAADVLIRRYMDKLSGYFAAKLSQGDSVADLVQQTLEGCHRA 103 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 SFRG+ +F T+LYR+A N +++L + RRP + D+D I + G P Sbjct: 104 APSFRGECSFRTFLYRVAGNKLRDFLRGKARRPRAEDIDEISVADLNPG--------PST 155 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + + ++ + SLP ++ + R LS EIA I+ V +SR+ RA+EA Sbjct: 156 IRRQNHRQAVLLDALRSLPLQMQELLEFRYQQDLSIREIAEILGIEVSATKSRLRRAKEA 215 Query: 181 I 181 + Sbjct: 216 L 216 >UniRef50_A7HAL3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HAL3_ANADF Length = 220 Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 14/200 (7%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPD-VVQEAFIKAYRALDS 63 L D LV V+ GD+ AF LV R+ + +V + V + VVQE ++ LD Sbjct: 18 LGDSELVALVRTGDRTAFGALVRRHGGALLRFARVFVRASSVAEEVVQETWMAVLEGLDG 77 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPP-------SSDVDAIEAENFESGGALKEI- 115 F G ++F TWLYRI N A+ +GR P D A++ + F++ G ++ Sbjct: 78 FEGRASFKTWLYRILANQARTRASREGRSIPFSALAETGGDDRAVDPDRFDAAGMWRDPP 137 Query: 116 -----SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV 170 PE L L E R ++ + LP R + LR+ DGL EEI ++ V Sbjct: 138 VGWTDETPERLALEAETRGVMESAVAGLPPAQRAVLVLRDEDGLETEEICNLLGLTVTNQ 197 Query: 171 RSRIFRAREAIDNKVQPLIR 190 R + RAR + ++ +R Sbjct: 198 RVLLHRARTRVRQAIEAHMR 217 >UniRef50_B8I5U3 RNA polymerase sigma factor n=3 Tax=Clostridiales RepID=B8I5U3_CLOCE Length = 189 Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 95/178 (53%), Gaps = 4/178 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 ++D +++ +K ++ L+ RY+ V ++ Y + D D+ QE FI +++++ Sbjct: 3 VSDIAILKEYKKNRRRGLELVYDRYKKYVYTIAFHYAGNKEDALDITQEVFISVFKSMEG 62 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F+ + W+ +I VN N+L + + P+ ++ I E + ++ +L Sbjct: 63 FKEQFSMLPWIKKITVNKCLNFLRS---KKPNLSLNEINENGDELQSIISSNEKTDDEVL 119 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +E RQI+ ++I SLPE RM + LR + + Y EIA +M P GTV++ I RAR+ I Sbjct: 120 CKETRQILEQSIGSLPERERMVVLLRHIKQMKYSEIAIVMKLPPGTVKTLIHRARKTI 177 >UniRef50_A6TSA9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSA9_ALKMQ Length = 187 Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 100/189 (52%), Gaps = 21/189 (11%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 +++D+ L++ Q + + F+LL +YQ + L Y S D D++QE +IK Y+++ Sbjct: 7 EVSDEKLIKLCQDQNMEGFDLLYTKYQSYIYRLCYNYTHSKEDSLDLLQEVYIKIYQSIP 66 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI----EAENFESGGALKEISNP 118 F W+ +I +NT N+ A+ ++P +D A+N E Sbjct: 67 RFEKGHPLSPWIKKITINTCHNF--ARAKKPTPLPLDPTLSIPSADNVE----------- 113 Query: 119 ENLMLSEELRQIVFRT-IESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 L LS + + + +T I LP +++ I LR ++ +SY+EI+ + P+GTV++ +FR Sbjct: 114 --LALSYKSTEKLLKTSISQLPHEIKSVILLRHVEAMSYQEISQCLSIPIGTVKTHLFRG 171 Query: 178 REAIDNKVQ 186 R+ + ++++ Sbjct: 172 RKHLKDQLK 180 >UniRef50_C4RNN1 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RNN1_9ACTO Length = 184 Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 86/176 (48%), Gaps = 11/176 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQ---HKVASLVSRYVPSGDVPDVVQEAFIKAYRAL 61 + D+ V R Q GD KA+ LLV R+ H+ A L+ D DV+QEAF+K YR L Sbjct: 1 MDDEEFVTRAQAGDLKAYELLVARHTASAHRTAVLLG---AGSDAEDVIQEAFVKGYRKL 57 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 +RG+S+F WL I N +N ++ RR + A E + E N Sbjct: 58 SRYRGESSFRAWLLAIVANETRNLHRSRDRRYGL----MLRAARVEPHPEVAE-DNAVGA 112 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 +L+ E R + R + SLP R I R LS EE ++ P GTV+SR RA Sbjct: 113 VLAGERRAALVRALRSLPARDRGVIVCRYFLDLSEEETVTMLGWPRGTVKSRTSRA 168 >UniRef50_B3EM30 RNA polymerase sigma factor n=8 Tax=Chlorobiaceae RepID=B3EM30_CHLPB Length = 212 Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 13/197 (6%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 EQ+ Q L + F+ +V +Q V + R+V + D D+ QE FI+AYR+L Sbjct: 20 EQVNQQRLKRNGHSIQEDDFSTIVAEHQDMVLNTCFRFVLNREDAEDIAQEVFIEAYRSL 79 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV-------DAIEAENFESGGALKE 114 ++FR +S TWLYRIAV + ++L + R+ S + D E S A Sbjct: 80 ENFRKESKLSTWLYRIAVTKSLDHLRKKKRKKRFSSLKRVIGLHDPTEELALPSSTA--- 136 Query: 115 ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 PE ++ E +I+ + SLP++ + A L + DG S +EIA IM V V S + Sbjct: 137 --TPEEVLSGNERTEILQDALSSLPDNQKTAFLLSKYDGYSNQEIADIMQTTVSAVESLV 194 Query: 175 FRAREAIDNKVQPLIRR 191 RA++++ NK++ ++ Sbjct: 195 HRAKKSLQNKLEKHYKK 211 >UniRef50_D0MJ41 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJ41_RHOM4 Length = 221 Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 11/192 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYR 59 +Q++D+ L+E+ Q G +AFN+LV RY ++ + ++ GD D++QE F++ YR Sbjct: 29 QQMSDEDLMEQFQAGTVEAFNILVERYSERLMHYLYGFL--GDARRCEDLLQETFLRVYR 86 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL-KEISNP 118 S++ + F TWLY IA N A++ + RR S + ++ ++ E AL E +P Sbjct: 87 NRHSYQRIAKFSTWLYTIAGNLARSEYRKRKRRRVYS-IQSVNRDDEEYEIALPDETFSP 145 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + S + + + S+P D R + LR++ L+YEEIA I P+GTV+SRI R R Sbjct: 146 DKHAESIIQDKYIQEALSSIPPDFREVVVLRDVQQLTYEEIAQITGLPMGTVKSRINRGR 205 Query: 179 EAIDNKVQPLIR 190 K+Q L++ Sbjct: 206 ----TKLQALLK 213 >UniRef50_Q08NR7 RNA polymerase sigma-E factor n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08NR7_STIAU Length = 152 Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 74/134 (55%) Query: 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE 107 D+VQE F+ ++ L FR D+ TWL+RI+ N N L RR + ++ E Sbjct: 10 DLVQEIFVSVHQNLRKFREDAKLSTWLFRISKNQCLNRLKYLNRRGRGRSAEYVDVGERE 69 Query: 108 SGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPV 167 G L+ P+ ++ + R V + I L D R+ + LRE++GLSYEEI I + P Sbjct: 70 LSGVLEAPPTPDAMLDAARERARVQQAISQLEPDARLLVALREIEGLSYEEIVDITELPE 129 Query: 168 GTVRSRIFRAREAI 181 GTV+SR+ RARE + Sbjct: 130 GTVKSRLHRAREKL 143 >UniRef50_C0Z4C2 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C2_BREBN Length = 185 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 14/185 (7%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFR 65 D+V++ RV +G++ A++ ++ RY KV+S++ + + + D D+VQE FIK Y L ++ Sbjct: 4 DRVIIGRVLQGNKDAYSEIIARYHGKVSSILRKMLGHTPDAQDIVQEIFIKTYYHLPEYK 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + F WLYRIA N + L + R+ S + IE + + PE L++ Sbjct: 64 ANYDFSAWLYRIAANHCLDELRKRKRKLTLSSNEEIEPVDSHT---------PEVAFLNK 114 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA----REAI 181 E ++++ + + S+ E R+ + +R + LS EEI+ + P TVR+R+ R REAI Sbjct: 115 EGQRLLRQRMMSVEEKYRIVLEMRYFESLSCEEISHRLSIPSSTVRTRLSRGKDKLREAI 174 Query: 182 DNKVQ 186 + Q Sbjct: 175 GHAGQ 179 >UniRef50_D0LRW7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRW7_HALO1 Length = 225 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 11/165 (6%) Query: 15 QKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDSAFYTW 73 ++GD AF LV RY+ ++ +L D D+ Q+ F+KAYRAL+SF G S F+TW Sbjct: 19 KRGDDSAFGELVRRYRERIFALALHLTGRESDADDITQDVFLKAYRALESFEGRSEFFTW 78 Query: 74 LYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ---I 130 +YR+ VN + N + RR ++ ++ + A+ +P+ + ELRQ Sbjct: 79 VYRMTVNRSLNVRRDRKRRSETT----MDDPRVDRAVAVDAAGDPQR---AAELRQTYTC 131 Query: 131 VFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 + ++ LP +R ++ L L GLS+ E A + C GT+ RI Sbjct: 132 LLAALDRLPASMRTSVVLVTLQGLSHAEAAVVQSCSPGTIAWRIH 176 >UniRef50_C8R1R3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1R3_9DELT Length = 189 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 104/183 (56%), Gaps = 8/183 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 LV ++KGD++AF LV +Q ++ +L YV + D+ Q+ FI +R+L S R ++ Sbjct: 12 LVRALRKGDERAFADLVRLHQGRIYNLALNYVKDEEEAKDLTQDIFITVHRSLASLRDEA 71 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRP--PSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 F WLY++A+N +N RR SS +D + + G +PE ++ + Sbjct: 72 KFGAWLYQLALNHCRNRYKRLQRRGFFRSSSLDDPDRPLHLTDG-----ESPEGVLGRRD 126 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++V R I L + I LR+++GL+Y+EI I+ P+GTV+S++ RAR A+ ++++ Sbjct: 127 QDRLVRRAIAELAPAEKEIILLRDIEGLTYDEIGDILAIPLGTVKSKLNRARLALKSRLE 186 Query: 187 PLI 189 ++ Sbjct: 187 KVL 189 >UniRef50_Q1IS06 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=Q1IS06_ACIBL Length = 198 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 7/184 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 EQL+D ++ RV +GD AF+ LV +++ + S + R + ++ QE F++ YR+ Sbjct: 9 EQLSDAEVMLRVAQGDDAAFDYLVDKFRRPIISFMYRTTHNQATAEELAQEVFLRVYRSR 68 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP--- 118 +S+ + F TWLYRIA N A N A+ + ++ E E G+ ++++ Sbjct: 69 ESYEASAKFTTWLYRIATNLAVNN--ARDTKHERAEAQVSLDEPDEESGSTMDVADSRPT 126 Query: 119 -ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 E +L E + + +E LPE RMA+ + + + Y+EIAA++ +S +FRA Sbjct: 127 VEQEILRNERMTAIRKVVEGLPERQRMAVLMHKYQNMDYKEIAAVLKLSESATKSLLFRA 186 Query: 178 REAI 181 E++ Sbjct: 187 YESL 190 >UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU8_PELCD Length = 214 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 21/193 (10%) Query: 1 MSEQLTDQ--VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFI 55 +SE +TD +L+ER+++GD+ AF LV + V +L R + GD D+ QEAF+ Sbjct: 19 LSEPMTDSESLLLERIRQGDEGAFTQLVSGHLSSVVNLAYRML--GDRQEAEDLAQEAFL 76 Query: 56 KAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV-AQGRR------PPSSDVDAIEAENFES 108 + +R+L SFRGD TWLY++ +++ Q RR D D + NF Sbjct: 77 RLHRSLPSFRGDCRIKTWLYKVVSRLVIDHIRREQVRRRIFFFRKHEDDPDPVA--NFAD 134 Query: 109 GGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVG 168 A +P + +L +E RQ +F+ +E L R LR +GL +EIA ++ G Sbjct: 135 PSA-----SPSDQLLGQETRQKLFKAMEKLSGRQRAVFVLRHQEGLPLKEIAQVLHLKEG 189 Query: 169 TVRSRIFRAREAI 181 TV++ + RA + I Sbjct: 190 TVKAHLHRAVQCI 202 >UniRef50_C0BMT3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BMT3_9BACT Length = 190 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 10/185 (5%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS 68 L++ GD KA L +Y + ++ R V + + DV+QEAFI A++ LD F G Sbjct: 12 LIKDCLHGDAKAQFALYEQYHKAMYNVAWRIVKEAHEAEDVMQEAFISAFKKLDQFSGQV 71 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 F WL +I +N A + R+ D ++E E + G L + +N ++ +E Sbjct: 72 TFGAWLKKIVINKA----IVAFRKQKKQDTISLEEEIYSIPGPLADATNQKD---NERKA 124 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ-- 186 +V TI SL E+ R+++TL ++GL++EE++ ++D R+ RA+E + K++ Sbjct: 125 ALVLETIGSLKENYRISLTLHLIEGLTHEEVSELLDISSSNCRTTFSRAKEQLKKKLETH 184 Query: 187 PLIRR 191 PL + Sbjct: 185 PLWKH 189 >UniRef50_A7BEQ0 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEQ0_9ACTO Length = 195 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 14/188 (7%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKV---ASLVSRYVPSGDVPDVVQEAFIKAYRALDS 63 D+ LV R Q GD AF LV RYQ ++ A ++ R D D+VQE I+A+R++ Sbjct: 11 DRCLVLRAQDGDIGAFEKLVNRYQGRLFRSAYMIVRN--RQDSEDIVQETLIQAWRSIHL 68 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE--SGGALKEISNPENL 121 R +AF WL RI N A + + Q RR D +AE+ + S A +N + Sbjct: 69 VREPAAFRGWLVRICTNKATSLMRKQQRRA----TDPYDAESLDTVSNTAQASANNTADP 124 Query: 122 MLSEELR---QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 S E+ + + + S+P +LR+ LRE+D ++YEEI ++ V TVR R+ RAR Sbjct: 125 ADSSEVNAQIKALADILASVPANLRIVWVLREIDEMTYEEIGQTLNLTVPTVRGRLARAR 184 Query: 179 EAIDNKVQ 186 + K++ Sbjct: 185 SLVMRKMK 192 >UniRef50_B4WJK4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WJK4_9SYNE Length = 224 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 8/189 (4%) Query: 4 QLTDQVLVERVQKGDQK---AFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 QL++ L+ R QK D + AF LV RY + L+ D D+ QE +I+ Y+ Sbjct: 29 QLSNSELILRCQKLDSRDRTAFEELVARYHRYIDKLLFDLASDWLDRTDLAQEVWIRVYK 88 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA---IEAENFESGGALKEIS 116 ++ + F +WL RI N + L + R S +DA + ++E + Sbjct: 89 SIHKLNDPTKFKSWLSRITTNLFYDELRKRKRFQRSVSLDAPRYLNNRHYE-WELPSDQP 147 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 P + +L+ E R + + + LP+ R I LREL GLSYEEIA++ +GTV+SRI R Sbjct: 148 TPTDDVLTREFRDYLEQAMSELPQTFRETIALRELQGLSYEEIASMTGVSLGTVKSRIAR 207 Query: 177 AREAIDNKV 185 AR + K+ Sbjct: 208 ARRKLQEKL 216 >UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T39_SYMTH Length = 210 Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 19/185 (10%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFRGDS 68 L+ R Q GD++AF L Y+ V V ++ DVVQE F+K +R++ +F+ S Sbjct: 8 LIARCQAGDRQAFEELFTFYRDDVFRFAYLVVRDANLAQDVVQETFLKVFRSIANFQFRS 67 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS--------NPEN 120 +F +WLYR+AVN A L RR ++D + GA++E PE Sbjct: 68 SFKSWLYRVAVNEAITLL---RRRRIKEELDP-------APGAIQEHQRDRVDRAWQPEE 117 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 +L E R+++ I L R I L+ S EIAA++ CP GTV+SR+ RARE Sbjct: 118 AVLDSEERRLLHVAIGRLDPVHRTVIVLKYFHEFSDTEIAAVIGCPPGTVKSRLHRAREL 177 Query: 181 IDNKV 185 + + + Sbjct: 178 LRHHM 182 >UniRef50_B9XQ34 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XQ34_9BACT Length = 212 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 8/190 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRY---VPSGDVPDVVQEAFIKAYRALDSFRG 66 ++ R KGD A++ L R+ V + DV ++ QE F+ R+LDSF G Sbjct: 13 MISRCCKGDSSAWDELFDRHYASAGRFVFQLGYNFTQEDVEEICQEVFLSVIRSLDSFHG 72 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQ--GRRPPSSDVDAIEAENFESGGALKEIS---NPENL 121 +S F TWL+RIA N A++Y Q +R ++ A+ E G L S P++ Sbjct: 73 NSQFQTWLFRIAANKARDYRQKQQAAKRGGGQVTLSLNADGPEEGPTLDPPSRAPGPDDT 132 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +++ E ++ T+E L E R I LR LSYEE+ ++ TV SR+ + + + Sbjct: 133 LMTTERMALLHGTLEKLGEPCREIIELRYFAELSYEELGQTLELNPKTVSSRLSKCLDHL 192 Query: 182 DNKVQPLIRR 191 + +P+ R Sbjct: 193 EEIARPVFSR 202 >UniRef50_C1A5K6 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5K6_GEMAT Length = 186 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 13/177 (7%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSF 64 +DQ ++ RV GD+ AF++L+ RY + S DV D++Q +FIKAY L Sbjct: 13 SDQEVIARVMAGDRDAFSMLIGRYSDPLYRHALGMTGSPDVAEDILQTSFIKAYHHLGEV 72 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG F WL+RI N K++L R S D D + SG A +P+ + Sbjct: 73 RG--RFDAWLFRIVANGCKDWLKNIRRTHLSYDED-----DQPSGYA-----SPDEDLDR 120 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ELRQ + + L LR A ++ ++G SYEE+A ++ VG ++ R+ RAREA+ Sbjct: 121 TELRQDLDSALAQLAPSLREAFIMKHVEGRSYEEMADLLGTTVGALKMRVHRAREAL 177 >UniRef50_D2L6E5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L6E5_9DELT Length = 220 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 2/179 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 + D +++ +V++GD A+ L+ +YQ +V+ +VS + P V ++ EAF++AYR+L + Sbjct: 32 MEDALVLAKVREGDVDAYARLMTKYQGRVSGIVSGHAPRDRVAELTHEAFVRAYRSLPGY 91 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRR--PPSSDVDAIEAENFESGGALKEISNPENLM 122 RGDS F WL ++AV T ++ A+ RR P S++ E AL+ E Sbjct: 92 RGDSPFGHWLAKVAVRTCHDFWRAEYRRRERPESELSDECRAFAEEAAALETSEAAEETA 151 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E R+++ ++ L RM +TL L+ S E A ++ V V+ R FRAR+ + Sbjct: 152 SRREARELLAWAMDRLSPTDRMVVTLTHLEERSVAEAAEMLGISVPNVKVRAFRARKKL 210 >UniRef50_C7ICT2 RNA polymerase sigma factor n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICT2_9CLOT Length = 204 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 100/182 (54%), Gaps = 12/182 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 ++D +++ +K ++ L+ RY+ V ++ Y + D D+ QE FI ++++D Sbjct: 18 VSDITILKEYKKNSRRGLELVYDRYKKYVYTIAFHYAGNKEDALDITQEVFIAVFKSMDG 77 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI--SN--PE 119 F+ + W+ +I VN + N+L ++ + ++ + E+G L+ I SN + Sbjct: 78 FKEQFSMLPWIKKITVNKSLNFLRSKKQNLSLNETN-------ENGDELQSIISSNETTD 130 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + +L ++ RQI+ ++I LPE RM + LR + + Y EIA +M P GTV++ I RAR+ Sbjct: 131 DTVLYKDTRQILQQSIGRLPEKERMVLVLRHVKQMKYSEIATVMKLPPGTVKTLIHRARK 190 Query: 180 AI 181 I Sbjct: 191 TI 192 >UniRef50_D1CIE7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIE7_THET1 Length = 186 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 13/180 (7%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 E L + LV + GD++AF+ LV YQ V L R + + + D QE F++AY L Sbjct: 9 ELLAEMELVRAARDGDKEAFSALVRLYQQDVYRLCYRVLGNHHNAEDASQEVFLRAYDRL 68 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + F +WL RIAVN N + RR P ++++ + +PE Sbjct: 69 KQLESNDKFRSWLMRIAVNICLN---ERRRRHPITEIEEWHH---------PDTQDPETN 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L E Q+V R I+ LP + R+A+ L++L+G+ Y +IA ++ GT R ++R R+ + Sbjct: 117 TLRSERLQLVERAIQELPRNHRIALVLKDLEGVDYAQIADYLEVQEGTARVWVYRGRQKL 176 >UniRef50_C0YUE0 ECF family DNA-directed RNA polymerase sigma subunit SigW n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YUE0_9FLAO Length = 183 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 10/168 (5%) Query: 20 KAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFRGDSAFYTWLYRIA 78 K L+ YQ ++ + R + GD+ D +QE FIKAY+ F+ DS YTWLYRIA Sbjct: 20 KGVRALMDAYQSRLYWHIRRIIVDGDLAQDTLQETFIKAYQNFHQFKNDSQLYTWLYRIA 79 Query: 79 VNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESL 138 N A V + ++ +D D ++ + + ++ + +EE++ ++ I+SL Sbjct: 80 TNEALQ-QVNKMKKMQKTDEDP----DYHMQNLVADNTDDD----AEEIQILLQNAIQSL 130 Query: 139 PEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 PE ++ +R D L YEEI+ I+D VGT+++ A++ I++ ++ Sbjct: 131 PEKQKLVFMMRYYDDLPYEEISKIVDMSVGTLKTNYHYAKQKIEDYIK 178 >UniRef50_D1C1C9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1C9_SPHTD Length = 224 Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 3/173 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFR 65 D+ L+ ++GD AFN LV RY+ V + R + + DV Q+ F++A+ AL+ F Sbjct: 24 DEELIAAAREGDLAAFNALVARYERAVYGVALRLLREPEAAADVTQDTFVRAHAALEQFV 83 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G SA WL RIA N + + L + RRP S +DA E ++PE + Sbjct: 84 GGSA-RAWLLRIATNRSYDLLRYRRRRPAES-LDARPVEEEPVWAVETPPADPEAFATRQ 141 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 EL + + +L +D R+A+ L ++ G SY+EIA++ +GTV+SRI R R Sbjct: 142 ELSTRLEAALAALTDDQRVAVVLYDVQGYSYDEIASLTGATLGTVKSRIHRGR 194 >UniRef50_D2QGU1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGU1_9SPHI Length = 196 Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 106/181 (58%), Gaps = 6/181 (3%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGD 67 VL+E +++GDQ+AF + R + +V +L YV + D ++ Q+ +++ +R++ SF G+ Sbjct: 9 VLLEAIRQGDQEAFRQVYERTKTRVFNLALGYVRNREDAEEITQDVYVELFRSVASFNGN 68 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL---KEISNPENLMLS 124 ++ TWLYRIAVN + ++L Q R+ + + ++ N +G L + S+P + + Sbjct: 69 ASGTTWLYRIAVNKSLDFLKYQKRQKRFAFLTSLFDSN--TGETLYQPTDFSHPGVTLEN 126 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E I+F+ I+ L E + A L +++GL+ E AAIM VG V S + RA + + + Sbjct: 127 KEQAAILFKAIDRLSEKQKTAYILTKVEGLTNIETAAIMAISVGAVESLLQRATDNLKKQ 186 Query: 185 V 185 + Sbjct: 187 L 187 >UniRef50_Q01QB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QB2_SOLUE Length = 205 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 6/187 (3%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + TD V R + GD AF +LV R+ + L R + D DVVQE+F++AY+ L Sbjct: 16 ECTDLEYVTRARAGDTDAFRVLVERHSRALFRLAFRMTGNQQDGEDVVQESFLRAYKQLA 75 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL--KEISNPEN 120 F ++F TWLYRIAVN + + + ++ RR ++ A E E L + P+ Sbjct: 76 KFDERASFGTWLYRIAVNCSLDLVRSRKRR---NEHMAPEDSEMEDPVLLLPSKDPTPDR 132 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +S ++R+ V + L R A LR +G+ E+++ ++ C G + +FRA + Sbjct: 133 MAMSGQVRERVADAMNELSASERTAFVLRHFEGMCIEDVSRVLGCQPGAAKHSVFRAVQK 192 Query: 181 IDNKVQP 187 + ++P Sbjct: 193 LRRALEP 199 >UniRef50_B9XK22 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XK22_9BACT Length = 184 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 29/191 (15%) Query: 5 LTDQVLVER-VQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYRA 60 +D L+ R + GDQ AF LV RYQ V + ++R + GD D+ Q+AF+KA++ Sbjct: 3 FSDADLIARAISLGDQNAFGELVRRYQSPVRAFLTR-MARGDSHLADDMAQQAFVKAWQK 61 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-PE 119 L FRGD+ F TWL+ IA N + + RR AL+E+++ P Sbjct: 62 LSGFRGDARFSTWLFGIAYNEFR----MEARRNKEL--------------ALEEVADVPM 103 Query: 120 NLML-----SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 ML S LR + ++ L R A+ L +GL++EE A +++CP+GTV++ + Sbjct: 104 EPMLESSVRSSNLRMDLTEAMKLLNSAERAAVVLCCQNGLTHEEAAQVLECPLGTVKTNV 163 Query: 175 FRAREAIDNKV 185 R +E + ++ Sbjct: 164 LRGKEKLRKRL 174 >UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP6_ALIAD Length = 177 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 27/179 (15%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-----PSGDVPDVVQEAFIKAYRAL 61 D L+ R + GD +A +V YQ S V R + D D QEAFI+A+R+L Sbjct: 5 DLELIRRARHGDPQAIETIVRNYQ----SFVYRTAYGILQNAADAEDATQEAFIRAFRSL 60 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRP--PSSDVDAIEAENFESGGALKEISNPE 119 R D F TWL RIAV + + + A+ RR P+ ++ ++ E Sbjct: 61 GRLREDRTFPTWLARIAVRISLDMVQAKARRAQDPTEEIHG-------------SVAGGE 107 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + LR + R + L + R I LR GL Y+EIA ++D P+GTVRSR+ AR Sbjct: 108 D---AASLRIDLERALAKLSPEHRTVIVLRAFHGLEYDEIAEVLDIPIGTVRSRLHHAR 163 >UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T27_SYMTH Length = 208 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 97/174 (55%), Gaps = 2/174 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFR 65 D+ L Q+GD AF LV R++ +V + + V + D D+ QE F+K +R L S+R Sbjct: 5 DETLAFAAQQGDMDAFAALVERHKGRVYRTLYQVVGDAADAQDLAQEVFVKVFRNLGSYR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-SNPENLMLS 124 GD+AF TWL+R+ +N A ++L A+ RRP + ++ E L + PE L L Sbjct: 65 GDAAFTTWLHRVTLNVAFDWLRARKRRPLTVPLEPPPGEEEHRQADLPSPEAGPEELTLR 124 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 EE R+ + I+ L D + + L LSY++IA + PV TV +R++RAR Sbjct: 125 EERRRRLRDAIDRLSPDYKEVVLLYHFYHLSYQQIADRLGVPVRTVETRLYRAR 178 >UniRef50_Q01YV2 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YV2_SOLUE Length = 221 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 5/184 (2%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDS 68 LV+R Q GD+ AF +V RYQ KV S++ V DV D+ Q+ F K Y ++ SF S Sbjct: 33 LVQRAQSGDEVAFREIVERYQAKVFSIIHGIVRQRNDVEDIAQQVFAKVYLSIKSFDFRS 92 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPP--SSDVDAIEAENFESGGALKEISNPENLMLSEE 126 + TW+Y+I VN +YL + R SD+ E E+ + P + L+ Sbjct: 93 SLITWIYKITVNECFDYLRKRKVRKLVYESDMSEDEVRRVENSEPNVDRQVPIDATLAR- 151 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 R V + + + E+ RM + ++E++G S EE+AA T++ ++FRAR+ + Q Sbjct: 152 -RDYVVKLLTRVSEEERMLLMMKEVEGFSVEELAAQTGMNENTIKVKLFRARQKLVKAAQ 210 Query: 187 PLIR 190 L R Sbjct: 211 RLDR 214 >UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5Q9_GEMAT Length = 187 Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 16/188 (8%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E L ++ LV Q GD AF LV R+Q + ++ V S D D VQE F+ A+RAL Sbjct: 10 EALEERELVLAAQAGDNVAFAGLVRRHQRRAYAVARAIVLSHDDAEDAVQEGFLHAFRAL 69 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE-N 120 + FR + AF WL+RI N A + RR D D + + +S+P + Sbjct: 70 ERFRPEQAFGAWLHRIVANAALDI----ARRRKVRDADELP----------ETLSSPHRD 115 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 S+ELR + R +++L E R I L +++G + EI ++ P GT RS + AR Sbjct: 116 PAESDELRARLTRALDTLGERQRAVIVLHDVEGYKHAEIGTLLGIPEGTARSDLHHARAH 175 Query: 181 IDNKVQPL 188 + ++ L Sbjct: 176 LRRQLSNL 183 >UniRef50_D2QZ03 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Planctomycetaceae RepID=D2QZ03_9PLAN Length = 224 Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 6/182 (3%) Query: 14 VQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFRGDSAFYT 72 V+KG+ AF LV+RYQ ++ +++ V + ++ D+ QE F++ +RA + + + F T Sbjct: 24 VRKGNAGAFEELVLRYQSRLLTVLEHLVGNRELAEDLAQEVFLRVFRARERYEPGAKFST 83 Query: 73 WLYRIAVNTAKNYLVAQGRR-----PPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 WL+ IA N A N L ++GRR P + A + P + E Sbjct: 84 WLFTIANNVASNALRSRGRRKEVGVPQQAGASESGAMQLDQMAKANSGLMPTRALDKAEA 143 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 ++V + IESL E RMA+ L + + +SY++IA+ M+ V +S + RAR + + + P Sbjct: 144 AEVVRQAIESLSERQRMALLLSKFENMSYQDIASTMELTVQATKSLLSRARVNLRDILAP 203 Query: 188 LI 189 + Sbjct: 204 YV 205 >UniRef50_A5GCL0 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Geobacter RepID=A5GCL0_GEOUR Length = 188 Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 13/165 (7%) Query: 20 KAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAV 79 K F+ + +Q K+ +S D D+ Q F+K ++L +FRG+S+ TW+YRIA Sbjct: 2 KNFDTVYREFQPKIHRYISHLSGGSDALDLTQAVFLKVSQSLANFRGESSLATWIYRIAT 61 Query: 80 NTAKNYLVAQGRRP-----PSSDVDAI-EAENFESGGALKEISNPENLMLSEELRQIVFR 133 NTA ++ ++ G + P D ++ + + +S GA +E + E+ + Sbjct: 62 NTAHDHALSSGTKQRINELPFDDTASVDDIPDLDSPGADRE-------YIRHEMNACIRG 114 Query: 134 TIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 ++ LPED R A+ L E D + +EIA I+ + TV+ R+ RAR Sbjct: 115 IVDQLPEDYRAALILSEFDEFTNQEIAEILAVSIDTVKIRLHRAR 159 >UniRef50_A0LQ54 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LQ54_SYNFM Length = 187 Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 7/177 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 +D +V V GD +A+ +LV RYQ + +L+ R S D D+ QE FIKAY +L F Sbjct: 5 SDYQVVASVLAGDTEAYAVLVKRYQKPIYNLMYRMTGSCEDALDLAQETFIKAYASLHRF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 R F+ WLY I +N ++N+L RR + ++ E+ + G L E+ + + Sbjct: 65 REGGRFFPWLYSIGLNHSRNFL----RRNKARQT--LDVEDCDPGSGLDYPGQEEDRLCA 118 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 V R ++ LP D R A+ LR LS EEIAA + + + R+ R E + Sbjct: 119 RLDSMGVRRALDRLPVDYREALMLRYHQELSMEEIAAALRISLSGAKMRVHRGLEKL 175 >UniRef50_Q67K53 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67K53_SYMTH Length = 203 Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 5/180 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 TD+ LV KGD+ AF +V RY+ ++ L R + + D D VQE +K AL F Sbjct: 3 TDEELVAAYLKGDEAAFEEIVRRYEDRLYRLSYRMLGNHHDALDAVQEILVKLMAALPKF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE--ISNPENLM 122 G S F TW+YR+A NT + +GR S +E S L + NP +L Sbjct: 63 EGRSRFGTWVYRLAANTCLDIRRKRGRTAAESLEATLEFSPAASLAILDDEPADNP-DLY 121 Query: 123 LSEELRQIVFR-TIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L ++ R+ V R ++ LPE R + LR+L+ S ++A ++ VG +++R+ RAR+A+ Sbjct: 122 LEQQYRENVVRAALDKLPESQRRLLELRDLEDFSNSQVADMLGIEVGALKARLHRARQAL 181 >UniRef50_B1HXE6 RNA polymerase sigma factor Y n=3 Tax=Bacillaceae RepID=B1HXE6_LYSSC Length = 182 Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 12/174 (6%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRY-VPSGDVPDVVQEAFIKAYRALDSFRGDS 68 L+ R Q+GD+ A+ L+ +Q V + V S D+ DV QE F+K YR L F+ D Sbjct: 6 LIARAQQGDKDAYIDLIRIHQQTVERFAFQCGVHSNDLADVSQEVFVKLYRFLHQFKQDR 65 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSD-VDAIEAENFESGGALKEISNPENLMLSEEL 127 F TWLY+I +N ++Y + R D ++A F +S ++++L EE Sbjct: 66 -FTTWLYKITLNATRDYYRKEQRELAKGDKLNAHRQTIF--------LSAEDDVLLFEED 116 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 R + I+SL E R I L L YEEIA +++ + TV+ R+ RA+E + Sbjct: 117 RTL-HNAIQSLDEKYRYPIVLYYFHELKYEEIAEVLNISLSTVKVRLLRAKEKL 169 >UniRef50_Q2RYX7 Extracytoplasmic function alternative sigma factor n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYX7_SALRD Length = 192 Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 11/190 (5%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYRAL 61 ++D+ L+ + Q G +AFN+LV RY ++ + R++ GD D++QE F++ +R Sbjct: 1 MSDEDLMSQFQAGTVEAFNILVERYSDRLMQYLYRFL--GDKKRCEDLLQETFLRVHRNR 58 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPEN 120 S+R + F TWLY IA N A++ + RR S + ++ +N E + + S +P+ Sbjct: 59 HSYRRIAKFSTWLYTIAGNLARSEYRKRKRRRMQS-IQSVNRDNEEYEMEIPDESFSPDK 117 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 S + + +P R + LR++ L+Y+EIA I P+GTV+SRI R R Sbjct: 118 HAESTIQDHYIQEAMNEIPPAFREVVVLRDIQQLAYDEIAEITGLPMGTVKSRINRGR-- 175 Query: 181 IDNKVQPLIR 190 K+Q L++ Sbjct: 176 --TKLQALLQ 183 >UniRef50_C6CXF0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXF0_PAESJ Length = 179 Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 35/196 (17%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQ-----HKVASLVSRYVPSGDVPDVVQEAFIK 56 SE+L +L + + GDQ+A+ LV RY+ H + L R D D QEAFIK Sbjct: 5 SEELKSIIL--QAKSGDQEAYAALVKRYKGHVYRHALGMLGDRM----DAEDAAQEAFIK 58 Query: 57 AYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS 116 A+ +L S AF +W+ RI N K+ L + + A+E E E G ++I+ Sbjct: 59 AFYSLSSLDTAYAFSSWILRITSNLCKDRLKKRAK--------ALEQELKE--GHNEDIT 108 Query: 117 NP------ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV 170 +P E + L++ L +I D R + L E+ G SYEEIAAI++ P+GTV Sbjct: 109 DPHMPDTLEKVSLADGLGRI--------SADHREVLLLHEVQGYSYEEIAAILEVPLGTV 160 Query: 171 RSRIFRAREAIDNKVQ 186 +SR+F AR + N+++ Sbjct: 161 KSRLFAARINLRNELR 176 >UniRef50_A9I4N5 RNA polymerase sigma factor n=4 Tax=Bordetella RepID=A9I4N5_BORPD Length = 234 Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 19/185 (10%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQ---HKVASLVSRYVPSGDVPDVVQEAFIKAYRALD 62 TD L R+ GD +A + L+ R ++ A + R D + VQEA+ KAYR + Sbjct: 14 TDAELAGRIAAGDSEALHTLMRRCNQTLYRTARSILR--DDADAEEAVQEAYFKAYRVMA 71 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRP--------PSSDVDAIEAENFESG-GALK 113 +FRGD++ TWL RI +N +K L + RR P+ D E E+ G+L Sbjct: 72 TFRGDASLTTWLTRIVINESKQRLRQRERRLRLVPLVDFPADDPRLPEKSMVEAAIGSL- 130 Query: 114 EISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSR 173 PE +L + R+++ I+ LP+ R LR ++ ++ +E+A +D P TVR+R Sbjct: 131 ----PEQFVLRAQTRKLLEYQIDQLPDAFRTVFMLRAVEEMTVDEVADCLDIPSATVRTR 186 Query: 174 IFRAR 178 FRAR Sbjct: 187 YFRAR 191 >UniRef50_UPI0001C317C9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317C9 Length = 529 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 11/174 (6%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D+ L+ V++G+ AF +LV RYQ ++ + + S D DV+QE F A+ A+ + Sbjct: 25 SDERLIALVRRGNHGAFEVLVGRYQSRLLAFCRHMLGSREDAEDVLQEVFAAAFNAILAD 84 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 WLYRIA N + N+L RR VD+++ E G + + + Sbjct: 85 DRPINARPWLYRIARNRSLNHL----RRAQPIGVDSMDVHLAEHGA-----TTADKVHKR 135 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 EE R+++ ++ LPE R A+ LRE+D LSYE+IA M+ + +V+S + RAR Sbjct: 136 EEFRELIA-DVQDLPETQRTALLLREIDALSYEQIAEAMETTIPSVKSLLVRAR 188 >UniRef50_Q04XI2 RNA polymerase sigma subunit n=4 Tax=Leptospira RepID=Q04XI2_LEPBL Length = 199 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 7/178 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVAS-LVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 D +++V GD +F +L+ RYQ + S ++ + + D Q+ F+KA+ +L +F+ Sbjct: 13 DWDCIQKVLHGDFNSFEILMNRYQGLIYSQVIKAFRNETEAEDFTQDIFLKAFESLSTFQ 72 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRR--PPSSDVDAIEAENFESGGALKEISNPENLML 123 G S F TWL+ IA +N ++ + RR P S +D + E + S E +L Sbjct: 73 GRSQFSTWLFVIA----RNEIIRRYRREHPEISGLDTLLLTESEVEKKNETSSEQETKLL 128 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +E+ + + +ESLPE R I L + +SY+EI+ ++ + T++S IFR +E + Sbjct: 129 KQEISEKIRSLVESLPELYRKPIMLHYFENMSYKEISQKLNLKMNTLKSYIFRGKEIM 186 >UniRef50_D2QW68 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QW68_9PLAN Length = 220 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 6/188 (3%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRG 66 Q L + GD+ A LV +Y +V ++ R + D D +Q+ F+ A R L +FRG Sbjct: 30 QQLARAIASGDRAASEQLVRQYGAQVLAVARRMLGRDDDAADALQDTFVAAARGLGNFRG 89 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI----EAENFESGGALKEISNPENLM 122 ++ TWL+RIAVN L + RR P+ +D + +A GG L +P L+ Sbjct: 90 EAELGTWLHRIAVNVCLMKL-RKNRRRPTVSLDELLPHFDATGHHQGGVLAWKRSPLELL 148 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 SEE R+ V I+ LP+D R + LR+L+ L E A I++ G V++R+ RAR A+ Sbjct: 149 CSEESREQVRSCIDRLPDDFRSILLLRDLEELDTAETARILEISEGAVKTRLHRARAALR 208 Query: 183 NKVQPLIR 190 + PL++ Sbjct: 209 TLLTPLMK 216 >UniRef50_Q1IQR2 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQR2_ACIBL Length = 223 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 14/191 (7%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALD 62 + +DQ ++ERV GD A+ LL+ RY ++ L+ + + DV+QEA+++A+R L Sbjct: 14 EWSDQEIIERVLAGDSPAYELLMRRYNQRLYRLIRSVLRDDAEAEDVMQEAYLRAFRNLS 73 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN----P 118 + G S F TW+ IAVN A L R +E ++ A +I++ P Sbjct: 74 QYEGRSTFSTWIGHIAVNEALARLSKASR---------LEYKDLNDPAATPDIADVAPTP 124 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E S E ++++ R I +LP R + + +++ ++ + AA+++ TVR R+ RAR Sbjct: 125 EAQSASGETQRLLERAIMTLPLRYRSVLMMHDVEDMTTADTAAMLELTEATVRVRLHRAR 184 Query: 179 EAIDNKVQPLI 189 + K+ L+ Sbjct: 185 ALVRRKLFALV 195 >UniRef50_Q67KL8 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KL8_SYMTH Length = 188 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 8/182 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + +Q + R Q GD +AF LV +Q V R D D+ EAF++AYR+L Sbjct: 7 VVEQEWIRRAQGGDAEAFAALVRLHQDGVYGFCLRMTGRREDALDLTSEAFLRAYRSLAG 66 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F F WL RIA N +++L A+ +RP + DA+ A+ P +L Sbjct: 67 FDVTQPFRPWLLRIAANLCRDHLRARQQRPAPVE-DAVLADL------PDPAPPPPGQVL 119 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + R V + + LPE R A+TL + LSY+EI+ +++ PVGTV + + RA+ + Sbjct: 120 AVHDRAAVRQAVAELPEPYRTAVTLHYFNHLSYQEISEVLNIPVGTVGTHLHRAKRLLRK 179 Query: 184 KV 185 ++ Sbjct: 180 RL 181 >UniRef50_B8HG32 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Arthrobacter RepID=B8HG32_ARTCA Length = 189 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 14/185 (7%) Query: 1 MSEQL---TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIK 56 M +QL D +L R GD AF L RY + + R S D DVVQEA ++ Sbjct: 1 MRDQLDLVPDAILAGRAADGDTAAFEALARRYGPHMRACARRLTGSYADADDVVQEALVQ 60 Query: 57 AYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS 116 A++ L+S R +A WL R+A + + +YL RR + + A+E ESG L+ + Sbjct: 61 AWKQLESLREPAAVKGWLLRLAGSRSIDYLR---RRRNHTSLSALE----ESGAGLEPAA 113 Query: 117 ---NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSR 173 PE+ ++ + + + LPE+ R L+E +G SYE+IA ++ +VR R Sbjct: 114 TAPGPESSAVASSGTEALKAALSRLPEEQRRCWVLKEFNGQSYEQIAQTLNISPASVRGR 173 Query: 174 IFRAR 178 + RAR Sbjct: 174 LARAR 178 >UniRef50_UPI00018742C8 ECF-family sigma factor W n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI00018742C8 Length = 181 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 9/182 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M+ ++ ++ LV+R Q GDQ AF L+ Y+ V S+ R + D D A AY+ Sbjct: 1 MTTKVLERELVQRAQNGDQAAFAELIRLYKDSVFSVCLRMCSNYHDAEDAFSIAVASAYK 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 D FRG S+F TW +IA+N K +R +D+ N S G+ Sbjct: 61 YFDRFRGSSSFKTWFTKIALNACKKQGQKIQKRTEMVQLDSDAGANMRSTGS-------- 112 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ++ + V ++ L + R + LREL G +YEEIAA P+ TV+SR+ RAR+ Sbjct: 113 DIDTRVAVVDQVQTALDQLRPNFREILILRELAGYTYEEIAAKQRIPLATVKSRLNRARK 172 Query: 180 AI 181 + Sbjct: 173 QM 174 >UniRef50_B8FG58 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FG58_DESAA Length = 222 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 11/186 (5%) Query: 5 LTDQV-LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDS 63 +TD+ ++ER+ GD +F L+ + H VAS+V R VP V DV QE FIKAY++L + Sbjct: 33 ITDEARIIERILNGDANSFEQLLEAHSHVVASIVRRRVPEDQVEDVAQEVFIKAYKSLAN 92 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI------SN 117 + F W+ IAV T ++ +R S +V A+ A E L +I ++ Sbjct: 93 LKNRDGFRPWVSSIAVKTCCDFW---RKRYKSKEV-AMTALAREHHDWLDKIYAEESTAD 148 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 E+L +E R+++ + L RM + L L+G++ E A I+ V+ R +RA Sbjct: 149 FESLCAQKEAREVLDAALARLSPKDRMVVELVYLEGMTGREAAKILKWTTANVKVRCYRA 208 Query: 178 REAIDN 183 ++ ++N Sbjct: 209 KKKLEN 214 >UniRef50_A6EDP4 Putative RNA polymerase sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EDP4_9SPHI Length = 194 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 11/194 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M++Q +D L+ V G+ + LV R+Q V +L R+ + D +V Q+ F+KAYR Sbjct: 1 MTQQQSDTDLINAVLAGNTDVYTELVKRHQRFVFTLAMRFTKNREDAEEVAQDCFVKAYR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +F+ +S F TWLY I TA +L RR +D ++ ESG L++ S+ + Sbjct: 61 ALGTFQQNSKFSTWLYTITYTTAMTFL----RRKK---MDTTSIDDVESGIQLQDRSSTD 113 Query: 120 NLMLSEELRQ---IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +LS E + + I +LP D + ITL S EEI + V+ ++ R Sbjct: 114 VDLLSVERKSGHTWLNNAIAALPADDAVIITLFYKGEQSLEEIGTALHMSSNAVKVKLHR 173 Query: 177 AREAIDNKVQPLIR 190 AR + K+Q L++ Sbjct: 174 ARIRLKEKLQYLLK 187 >UniRef50_Q11XH8 RNA polymerase, sigma-E factor n=3 Tax=Sphingobacteriales RepID=Q11XH8_CYTH3 Length = 201 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 12/148 (8%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE 104 D D+VQE ++KAYR DS+ + WL+RI NT N + + P + VD E E Sbjct: 44 DANDLVQETYLKAYRFFDSYEKGTNAKAWLFRILKNTFINEYRRKTKEP--NKVDYQEVE 101 Query: 105 NFESGGALKEISNPE------NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEE 158 ++ + + E + N M+ +E V + +L D R I L +L+G +YEE Sbjct: 102 SYYNSDEVNEPITSDLRVDSLNNMIGDE----VANALNALDVDFRTIIILCDLEGFTYEE 157 Query: 159 IAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 +A I+D P+GTVRSR+ RAR + K+Q Sbjct: 158 MAKILDIPIGTVRSRLHRARNVLKEKLQ 185 >UniRef50_Q47E65 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Dechloromonas aromatica RCB RepID=Q47E65_DECAR Length = 226 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 8/179 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQ---HKVASLVSRYVPSGDVPDVVQEAFIKAYRALD 62 T+ L +V GD AF L+ R+ ++ A V R D ++VQEA++ AYRAL Sbjct: 14 TELELARQVAAGDSDAFRTLMRRHNQTLYRTARAVLR--NDADAEEIVQEAWLLAYRALH 71 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 FRG++ TWL RI VN A Q R + + AEN PE+ Sbjct: 72 GFRGEAKLSTWLIRIVVNLALRRRQGQMR---DTTIRVDSAENEVEDMHPSPTETPESNA 128 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ELR+++ I+ LP+ R LR ++ L EE A+ + P TVR+R FRAR + Sbjct: 129 ANGELRRLLESHIDRLPDMYREVFILRGVEELDVEETASALGLPEATVRTRFFRARHQL 187 >UniRef50_D2SF99 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Actinomycetales RepID=D2SF99_9ACTO Length = 249 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 12/145 (8%) Query: 44 GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE- 102 D D+VQE F+KAY A F + WLYRI NT N + R+P D ++ Sbjct: 85 ADAEDLVQETFVKAYSAFHQFAEGTNLKAWLYRILTNTYINSYRKKQRQPQQYPTDQVQD 144 Query: 103 ------AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSY 156 E+ SG EI ++L S+ + ++ LPED R+A+ L +++G +Y Sbjct: 145 WQLYAAEEHSSSGLRSAEIEALDHLPDSD-----IKEALQQLPEDFRLAVYLADVEGFAY 199 Query: 157 EEIAAIMDCPVGTVRSRIFRAREAI 181 +EIA IM P+GTV SR+ R R + Sbjct: 200 KEIAEIMGTPIGTVMSRLHRGRRGL 224 >UniRef50_C0N975 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N975_9GAMM Length = 203 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 9/187 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPD-VVQEAFIKAYRALDSFR 65 ++ L+ ++ +GD AF +V Y H + VSR + D VVQ+A+I A +AL +F Sbjct: 12 EKTLIAKLIEGDAAAFEFVVTEY-HSIMLAVSRAIVGEAFADEVVQDAWISAIKALPNFE 70 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSD-VDAIEAENFESGGALKE------ISNP 118 G S+ TWL I N AK L + R+ D A F+ G + + P Sbjct: 71 GRSSLKTWLLHITSNGAKTRLRRESRQLSLDDGWQAEPGSKFDHTGHRIDDVLPWNVDTP 130 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E L+ +++LRQ++ + + LP + R +T+ +++G EI I+D R + RAR Sbjct: 131 EALLENDQLRQVIEHSYQQLPANQRAVLTMYDMEGFEMTEICNILDLSSSNARVLLHRAR 190 Query: 179 EAIDNKV 185 A+ + + Sbjct: 191 TALHHSI 197 >UniRef50_A6GQI2 Putative RNA polymerase sigma factor n=1 Tax=Limnobacter sp. MED105 RepID=A6GQI2_9BURK Length = 191 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 7/158 (4%) Query: 22 FNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 F LLV + + ++ + + ++ + V D+ Q+ I+AY DSFRGD+ TWL+ IA+N Sbjct: 28 FELLVAKQEKRLRNFIIKHFRDENAVEDIFQQTLIEAYCCWDSFRGDAKRATWLFGIALN 87 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPE 140 +N RR P E+ E A E S+P + E + I +LP Sbjct: 88 IIRN----TARRSPQYKFHFTSDEDLELEQA--EGSDPMQHCMKNEFSIKLESAIGNLPN 141 Query: 141 DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 DLR + L G SY+E A I+ P+GTVRSRI R+R Sbjct: 142 DLRETLILVVQHGNSYQEAADILGIPIGTVRSRISRSR 179 >UniRef50_D0MDW1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDW1_RHOM4 Length = 200 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 6/184 (3%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG--DVPDVVQEAFIKAYRALDSFRGDS 68 +E +++GD AF LV R + D +V+QEAF++A++ +D+FRG++ Sbjct: 13 LEALKRGDPAAFEALV-RAESPRLFRFLLRFLENEEDARNVMQEAFLQAFQRIDTFRGEA 71 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP---ENLMLSE 125 TWLY IA+N A+ L + R + D + S G + P + L E Sbjct: 72 RLTTWLYGIALNQARVLLRKKRRYEAMDEADLDRLQPTFSRGMYAQRHRPWPPDVLAERE 131 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +LR++V I+ LP+ R I LR+++ LS EE+A +++ G VR R+ RAR+A+ + Sbjct: 132 DLRRLVREAIDRLPDSYREIILLRDIEELSTEEVARLLNLSEGAVRVRLHRARQALRALL 191 Query: 186 QPLI 189 P I Sbjct: 192 SPHI 195 >UniRef50_C5RPF9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPF9_CLOCL Length = 187 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S++L D+ ++ER++ GD+ ++ +Y+ + SL Y G+ D+ QE FI Y++ Sbjct: 4 SDKLCDEDIIERLKNGDKNQLVSVIEKYKKMIISLCYSYTQDYGEAEDLSQEVFISFYKS 63 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 +++FRGDS T+LYRI VN Y + +R + + E G + Sbjct: 64 INNFRGDSKISTYLYRITVNKCITY---KKKRSVKMIFSGLFSHGKEEGIS--------- 111 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ E+RQ + LPE+L+ I L GLSY+EI+ +++ V RI+R + Sbjct: 112 VIDRNEVRQ----AVRDLPEELKNPIILYYYLGLSYKEISDVLEISERAVEGRIYRGKNK 167 Query: 181 IDNKVQ 186 + +K+ Sbjct: 168 LKDKLN 173 >UniRef50_Q5L9L9 RNA polymerase sigma factor n=32 Tax=Bacteroidales RepID=Q5L9L9_BACFN Length = 182 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 22/180 (12%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP---DVVQEAFIKAYRAL 61 L QV+V R + +AF+ LV +YQ V + GD D+ Q+ FIKAY + Sbjct: 9 LVAQVVVFR----NTRAFDQLVQKYQSPVRRFFLN-LTCGDSELSDDLAQDTFIKAYTNI 63 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 +F+ S+F TWLYRIA N +Y+ + R ++D+DA E + S E + Sbjct: 64 ANFKNLSSFSTWLYRIAYNVFYDYIRS---RKETTDLDAREVDAANS---------TEQV 111 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + E++ V++++ +L E R ITL ++ +S ++IA I CPVGTV+S + RA++ + Sbjct: 112 NVGEQMD--VYQSLRTLKEIERTCITLFYMEDVSIDKIAGITGCPVGTVKSHLSRAKDKL 169 >UniRef50_UPI00016C0B7C RNA polymerase ECF-type sigma factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0B7C Length = 198 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 7/181 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + + L++R Q GD AF +L+ Y+ + + + + + D D QE IK ++ L Sbjct: 1 MDESSLIKRAQSGDVGAFEVLIKNYESTIYRICFKVLKNEADSFDAAQEVCIKIWKQLGK 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLM 122 F S F TW+YRIA N + L R+ + V +I +N E L++ N E + Sbjct: 61 FEEKSKFSTWVYRIATNQCLDIL----RKGKNKKVVSIN-QNEEWALELEDTKINIEKQV 115 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 E +I+ ++ L ++ I L+++ LSYEEIA + +GTV+SR+FRAR A+ Sbjct: 116 EDAERLRILKSALDELKKEYSEIIILKDVKNLSYEEIATEKNISLGTVKSRLFRARNALK 175 Query: 183 N 183 N Sbjct: 176 N 176 >UniRef50_Q1AXP8 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXP8_RUBXD Length = 202 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 12/179 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 +L D+ LV R GD +++ LV RY+ VASL+ Y V D+VQE F++AY L+ Sbjct: 26 ELEDKELVARTLAGDMRSYEELVRRYERLVASLLYPYARREISVEDLVQETFLRAYDRLE 85 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +F + F TWL IA N + L RR + + E E+GG PE Sbjct: 86 TFNPEYRFKTWLLAIANNLGVDTLR---RRREVVEFNH-EVHAGETGG-------PEAAA 134 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 LS E + + + SLPE + + LR + +SY EIA +M V V+SR+FRAR + Sbjct: 135 LSAERAESLREAVLSLPEQYSVPLMLRYGEEMSYAEIAEVMGLSVPAVKSRLFRARNML 193 >UniRef50_B8HB35 RNA polymerase, sigma-24 subunit, ECF subfamily n=50 Tax=Actinobacteria (class) RepID=B8HB35_ARTCA Length = 280 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 10/143 (6%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE-- 102 D D+VQEA+ KA+ A ++ + WLYRI NT N + R P S+ D IE Sbjct: 110 DAEDLVQEAYTKAFSAFHQYKPGTNLKAWLYRILTNTYINLYRKRQREPLQSNSDTIEDW 169 Query: 103 ----AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEE 158 AE+ S G + + E L V R ++++PE+ R+A+ +++G +Y+E Sbjct: 170 QLARAESHTSSG----LRSAEAEALDHLPDSDVKRALQAIPEEFRLAVYFADVEGFAYKE 225 Query: 159 IAAIMDCPVGTVRSRIFRAREAI 181 I+ IM+ P+GTV SR+ R R+ + Sbjct: 226 ISDIMNTPIGTVMSRLHRGRKML 248 >UniRef50_C4LGI4 ECF-family sigma factor M n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LGI4_CORK4 Length = 249 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 20/183 (10%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 E ++D+ L V G A +L R++ + +SR+V DV D+ Q+ KA RA Sbjct: 75 ETMSDRELFAAVSAGQADAMAVLARRHEKSIRFAISRWVDCPEDVDDLWQDTLFKAQRAA 134 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGR-RPPSSDVDAIEAENFES--GGALKEISNP 118 FRG A TWL+RIAVNTAK+YL +G R D + AE F + GG Sbjct: 135 TMFRGRCAPGTWLHRIAVNTAKDYLRRRGNARMVVLDDATLPAEFFRANEGG-------- 186 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 LR + + L E R L +L G S +E AA +D GTV+SR RAR Sbjct: 187 --------LRAALKTALSGLDEPFRTTFLLVDLYGFSVKETAAKLDISPGTVKSRCSRAR 238 Query: 179 EAI 181 +A+ Sbjct: 239 QAL 241 >UniRef50_C0R1C6 R polymerase sigma-70 factor 2 n=2 Tax=Brachyspira RepID=C0R1C6_BRAHW Length = 181 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 19/185 (10%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 MS + + ++ + G+++A+ L+ Y+ + +LV + + D ++VQ+ F+ Y Sbjct: 1 MSSAMAYEDNIDAFKTGNEEAYKELIEMYKKPLFNLVYSIISNKDEAEEIVQDVFVSFYI 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +SF G S YTWLYR++ N A VD I + E LKE N E Sbjct: 61 KRESFEGRSKIYTWLYRVSFNRA---------------VDHIRKKEREKKYRLKEYRNSE 105 Query: 120 --NLMLSEELRQIVF-RTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 + + +I+ +E L +D R+ + + E + SY EI+ +D PV TVR+RIFR Sbjct: 106 VQESGNDDSIHKIILAEALEKLEDDFRIPLMMAEYENYSYNEISEKLDLPVNTVRTRIFR 165 Query: 177 AREAI 181 AR+ + Sbjct: 166 ARKKL 170 >UniRef50_B8JDV3 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Anaeromyxobacter RepID=B8JDV3_ANAD2 Length = 292 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 9/191 (4%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALD 62 + +D L++R + GD++A + L+ R+Q +V + D D++QE + A R + Sbjct: 2 ETSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTVK 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP---- 118 FRG S+ TW+Y IA +++ + + RR + + + E G +++++P Sbjct: 62 DFRGASSVSTWMYTIA----RSFCIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTP 117 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + ++ Q + I L R + LR+++GLS E+A +M V V+SR+ RAR Sbjct: 118 DESLAGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAEVMGLSVEAVKSRLHRAR 177 Query: 179 EAIDNKVQPLI 189 A+ + PL+ Sbjct: 178 VAVREALVPLL 188 >UniRef50_B5JPG3 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPG3_9BACT Length = 186 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 23 NLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNT 81 N L+ R+Q S RYV S D D+V+E F++ Y+ D F+ + F W + N Sbjct: 2 NELMERWQRPFMSFAYRYVQSEEDARDLVEELFVRVYKNRDRFKESTKFSAWAFTSLSNL 61 Query: 82 AKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN------PENLMLSEELRQIVFRTI 135 KN+ + RR P+ D++ + + G + ++ P+ L++E +IV I Sbjct: 62 CKNFERWK-RRHPAFGKDSLTDDWSRADGEVHPLAETGASIAPDQEALNQERIEIVKDAI 120 Query: 136 ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 LP DLR+ + L + + LSY+EI I+ C + V +R++RAR+A+ Sbjct: 121 NKLPHDLRVTLILYQYEALSYKEIGEIVGCTIKGVETRLYRARKAL 166 >UniRef50_B0SUX1 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Caulobacteraceae RepID=B0SUX1_CAUSK Length = 192 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 24/193 (12%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 TD+ L + +GD++AF LV R++ + L+ RY D + EAFI A+ ALD + Sbjct: 7 TDEALAAQAARGDERAFAQLVGRHKESLYRLLRRYTGDADEAYEAAHEAFIAAWAALDRY 66 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGG-----ALKEISNPE 119 +F +WL IA+N A++ +GR+ + F G AL + +P Sbjct: 67 DASRSFGSWLRTIAINKARD----RGRK--------MAVRRFFFGSVAPDDALAQAVDPG 114 Query: 120 NLMLSEELRQ-----IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 L ++LRQ ++ + + LP+ L+ + L +GLS+ E AAI+ +V +R+ Sbjct: 115 ALA-DDQLRQHQSMGLLNQAVAKLPDALKAPLVLTAFEGLSHHEAAAILGVSPKSVETRV 173 Query: 175 FRAREAIDNKVQP 187 +RAR+A+ + P Sbjct: 174 YRARKALAASLDP 186 >UniRef50_A6W8E3 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Actinomycetales RepID=A6W8E3_KINRD Length = 235 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 6/185 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALD 62 ++ D L GD+ AF +V R+ + + DV D VQ+AF+ A+R L Sbjct: 53 DEAPDASLARWAAMGDRDAFARIVDRHGPALMRYARNLLSGSDVEDCVQDAFLAAWRGLP 112 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-SNPENL 121 +FRGD++ TWL+ +A + A L R P S + E + L+++ +PE Sbjct: 113 AFRGDASLRTWLFTLARHAAFARLR---RWPASGSRPHVPVEEVQD--RLRDLREDPERS 167 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + LRQ + ++ LP R A LRE++GLSYEEIAA++ VR + R+R + Sbjct: 168 SVETALRQALEVALQLLPPRQRSAWLLREVEGLSYEEIAAVLSTSPTAVRGLLERSRTTL 227 Query: 182 DNKVQ 186 ++ Sbjct: 228 ATTLE 232 >UniRef50_A4X831 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=A4X831_SALTO Length = 216 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 23/168 (13%) Query: 16 KGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLY 75 +GDQ A + Q +V ++ + + D+ QE +++A R+L SF G S+ TWL+ Sbjct: 48 RGDQAAAAAFIRATQQQVRRFLAALISPAEADDLTQETYLRALRSLPSFAGRSSARTWLF 107 Query: 76 RIAVNTAKNYLVAQGRRP---PSSDV-DAIEAENFESGGALKEISNPENLMLSEELRQIV 131 IA A +++ A RP P +D D + F+ AL++I Sbjct: 108 SIARRVAVDHVRAATSRPRTVPMTDSHDVADESGFDRQVALEQI---------------- 151 Query: 132 FRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 I +LP D R A + ++ GLSY E A + CPVGT+RSR+ RARE Sbjct: 152 ---IAALPTDRREAFVVTQVLGLSYAEAAQVCGCPVGTIRSRVSRARE 196 >UniRef50_B1ZTW9 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZTW9_OPITP Length = 180 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 17/171 (9%) Query: 14 VQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP---DVVQEAFIKAYRALDSFRGDSAF 70 + + D+ AF LV R+Q V + + R++ GD+ D+ QE FI AYR L FRGD+ F Sbjct: 13 LARDDRAAFGELVRRHQSMVRNFL-RHLTRGDIALADDLAQETFIHAYRQLGRFRGDALF 71 Query: 71 YTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQI 130 TWL IA N +N RR V+ E + +G A N + +LR Sbjct: 72 STWLLGIAHNHWRN-----ARRRQREHVEFSE-HHLPAGPA-------GNASAAVDLRHD 118 Query: 131 VFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + +L D ++AI L GLS+ EIA ++D P+GTV++ + R++E + Sbjct: 119 LATALRTLSPDEQLAIHLGYEQGLSHTEIATLVDWPLGTVKTHLARSKEKL 169 >UniRef50_A4ARC6 RNA polymerase sigma-70 factor n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A4ARC6_9FLAO Length = 224 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 104/189 (55%), Gaps = 9/189 (4%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 ++++++ +++R+ G+++ + +L+ R K+ ++ Y+ ++ DV+Q ++KAY Sbjct: 11 NQRVSESDIIKRILSGEKELYEILLRRNNQKLYRVIRSYIKDEAEIEDVMQNTYLKAYEK 70 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL----KEIS 116 L F+ S + TWL RI +N L +G+ D++ N++S L K Sbjct: 71 LHQFKQSSLYSTWLVRIGINEVLARLREKGK---VVDINT-GISNYKSNTVLEIPDKNQL 126 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 NPE ++ +E+++++ TI+S+ R L+E++G+S +EIA +D V+ RI R Sbjct: 127 NPEKRIIRKEMQRLIEDTIDSIDAKYRTVYILKEVEGMSVKEIAECLDISSSNVKVRIHR 186 Query: 177 AREAIDNKV 185 A+ + K+ Sbjct: 187 AKAMLKAKL 195 >UniRef50_A6G472 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G472_9DELT Length = 188 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 15/178 (8%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPD-VVQEAFIKAYRALDS 63 ++D+ L+ R Q+GD+ AF L RY ++ + R + +V D ++Q+ F++ +RA Sbjct: 2 VSDEELMSRYQRGDRAAFRQLFERYAPRLRRTMLRGLHDREVADDLLQQTFLQLHRARAD 61 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 +R D++F W+Y IA+N ++Y GRR S AI+ + + +P+ LM Sbjct: 62 YRTDASFRPWIYTIALNVKRSYFRRVGRR--SEGALAIDPASID--------GDPDELMA 111 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ELRQ V +LP R + L +G S+ EIA ++ G V+ R RA ++I Sbjct: 112 ARELRQAV----ATLPAAQRQVVELFWFEGFSFPEIAGVVGSTHGAVKVRAHRAYKSI 165 >UniRef50_Q3B236 Sigma-24 (FecI-like) n=3 Tax=Chlorobiaceae RepID=Q3B236_PELLD Length = 180 Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 2/169 (1%) Query: 25 LVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAK 83 +V +Q V + R+V + D D+ Q+ FI+ +R+LD FR DS TW+YRIAV + Sbjct: 11 IVEEHQEMVLNTCYRFVFNREDAEDIAQDVFIEVHRSLDRFREDSKLSTWIYRIAVTKSL 70 Query: 84 NYLVAQGRRPPSSDVD-AIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDL 142 ++L R+ S + I AE+ A NPE + +E Q++ +ESLP+ Sbjct: 71 DHLRRLKRKKRFSSLKRMIGAEDPAINIAAPSRDNPEEALEDKERIQVLQVALESLPDSQ 130 Query: 143 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 + A L + DG S +EIA IM+ V V S + RA++ + ++ RR Sbjct: 131 KTAFLLSKQDGYSNQEIADIMETSVSAVESLVHRAKKKLQELLEDYYRR 179 >UniRef50_Q11VU6 RNA polymerase sigma-24 factor n=3 Tax=Sphingobacteriales RepID=Q11VU6_CYTH3 Length = 208 Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 5/179 (2%) Query: 7 DQVLVERVQ-KGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D +LVER + GD+KAF L+ RY+ V ++ + + + D D+ EAF KA++ L F Sbjct: 20 DFLLVERAKTSGDEKAFAELMSRYKKPVYHMILKMIRNVDDAEDLTIEAFAKAFKNLHKF 79 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN--PENLM 122 D F TWL+RIA N ++ + + + +S + +N E + SN P Sbjct: 80 NPDFTFSTWLFRIATNNCIDF-IRRKKLVTTSISSTYKDDNGEHTEMDIKDSNLTPFEET 138 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + +I+ + LP + + LR + SYEEIA ++ P+GTV++++ RARE + Sbjct: 139 IKSQKIEIIQAIVSKLPPKYQTLVRLRYFEEYSYEEIAVAIEAPLGTVKAQLHRARELL 197 >UniRef50_Q1PWR8 Similar to RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWR8_9BACT Length = 180 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 1/145 (0%) Query: 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE 107 D+VQEA++KA+++L + + WL++I +NT N P D D+IE+ + Sbjct: 30 DLVQEAYLKAFKSLRNGEIVNNERAWLFKILMNTFINQYRKSKTEPSLVDFDSIESFHKS 89 Query: 108 SGGALKEISNPEN-LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCP 166 + SN EN E L V + +E LP+D R+ + L ++G SY+EI+ +++CP Sbjct: 90 IKEEVLTPSNTENEAAFDELLDSDVKKALEELPDDFRLVVLLSIVEGFSYKEISKMLNCP 149 Query: 167 VGTVRSRIFRAREAIDNKVQPLIRR 191 +GTV SRI+R R+ + K+ ++ Sbjct: 150 IGTVMSRIYRGRKLLKEKLTGYAKK 174 >UniRef50_C7Q7J1 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Actinomycetales RepID=C7Q7J1_CATAD Length = 259 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 18/199 (9%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 D L ER++ GD+ AF +++ + + L +V +GD +VVQEA++ + ++ F Sbjct: 9 ADAELAERLRAGDEDAFRMVLEAWSPSMLRLARSFVSTGDSAEEVVQEAWLGVIQGIERF 68 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV-----------------DAIEAENFE 107 G SA TW++RI VN AK V + R P S + D A + Sbjct: 69 EGRSALKTWVFRILVNIAKGRGVKESRTLPFSSLLPEDEGPSVDPSRFRSADDPYAGRWS 128 Query: 108 SGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPV 167 G + + PE+ L E+R++V ++ LPE R + LR+++G + +E+ +++ Sbjct: 129 PGQKPQTWALPESEALDGEVRRVVADALDELPERHRTVVILRDVEGYASDEVCRLLNISP 188 Query: 168 GTVRSRIFRAREAIDNKVQ 186 G R + RAR + +++ Sbjct: 189 GNQRVILHRARAVVRGRLE 207 >UniRef50_C0ZGW3 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGW3_BREBN Length = 189 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 9/177 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D +++R+ +GD +A+ L+ RYQH + + + V + D D+ QE F+KAY L +F Sbjct: 3 SDAEIIQRILQGDIEAYRDLIQRYQHMIYVFIYKMVNNRSDAEDLTQEVFVKAYEKLSTF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGDS F +WL+ +A N + ++L RR D D E + +P+ +++ Sbjct: 63 RGDSQFSSWLHTLARNKSIDFL----RRRKYHDSD----EQLAYVPSNTRDESPQESLMT 114 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +E R+ + L + R I LR +E+IA ++ T R R RAR+ + Sbjct: 115 KEQRREIQEAFALLSDSYREVIVLRCTHEYPFEKIATLLGIAESTARVRYLRARQEL 171 >UniRef50_A6G694 Sigma factor AlgU n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G694_9DELT Length = 220 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 10/173 (5%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDS 68 LV R Q GD++A ++ R++ +V + R + P ++ D+VQ F +A+ A+D F G + Sbjct: 45 LVARAQAGDERALRVIYERHERQVRGHLFRLLGPDSELDDLVQIVFSRAFAAIDRFEGKA 104 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 A TWLYRI NT N L + A+ A N G + P + E R Sbjct: 105 AISTWLYRITANTTHNLLRQR--FRRERMRQAVRAFNI---GREADRVQPSKV----EAR 155 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 R +E L DLR L +GL+ +EI+ I+ PV T+ R+ RAR+ + Sbjct: 156 DEAQRLLEQLSPDLRQTFVLYHYEGLTLQEISTILGRPVSTIGDRLTRARKKL 208 >UniRef50_B0ME37 RNA polymerase sigma factor n=2 Tax=Anaerostipes caccae DSM 14662 RepID=B0ME37_9FIRM Length = 373 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 9/180 (5%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDSA 69 VER +KGD++AF L + VS + +V D++QE +++ Y +L + + A Sbjct: 14 VERAKKGDEQAFGYLYHSTYDMTRNFVSNFCKDQNEVEDIIQEVYLEVYHSLPILKNNMA 73 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLMLSEELR 128 FY WL RI + + Q RP D I E E +L E S P++++L E Sbjct: 74 FYAWLRRITYHCCLKSVRKQ--RP-----DIIGDEKIEFVKSLIEDSMQPQDVVLQNEKA 126 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 QI+ I LPE R A+ L + L +E A I+DC V V++ ++ R+ + +++ L Sbjct: 127 QILNECIRKLPEKQRAAMILSVIQQLKMKEAAEILDCNVNAVKNLLYHGRKNLKKQIEAL 186 >UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus coagulans 36D1 RepID=C1P827_BACCO Length = 177 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 17/181 (9%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKA 57 M EQ Q L+ + + GD AF +LV R++ +V Y +GD D+ QEAF+KA Sbjct: 1 MVEQDLTQ-LIRQAKAGDTDAFAVLVARFKGEV--FRHAYAMTGDRMEAEDIAQEAFVKA 57 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 + ALD AF +W+ +I + + L ++ VD ++AE E + SN Sbjct: 58 WYALDKLEHAYAFASWMSKIVSHLCYDRLKKMRKK-----VD-LQAE-IEEEPLRRPTSN 110 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 +N L ++R +E L + R AI LR++ G SYEEIA I++ P+GTV+SRI A Sbjct: 111 IDNANLRFDIRS----AMEKLSPEHRAAIVLRDIQGYSYEEIADILNIPLGTVKSRINTA 166 Query: 178 R 178 R Sbjct: 167 R 167 >UniRef50_B2IDE1 RNA polymerase sigma factor n=2 Tax=Rhizobiales RepID=B2IDE1_BEII9 Length = 247 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 12/157 (7%) Query: 31 HKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQG 90 H +A +SR + D+VQ++ ++A D FRGDS WL I N ++ +G Sbjct: 81 HNLARFLSRDADAAQ--DIVQDSVLRALNGFDKFRGDSP-KAWLLTIVRNCHNDWRT-KG 136 Query: 91 RRPPSSD--------VDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDL 142 RR PS+D + + E + F+ E PE +L + + +++LPE Sbjct: 137 RREPSTDQRRSFSQEIMSEEEDRFDPADLAIECETPETALLQRTEAERIRLILDALPEPF 196 Query: 143 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 R + LREL+ LSY EIA +D P+GTV SR+ RAR+ Sbjct: 197 REILILRELEDLSYHEIALTIDLPIGTVMSRLARARK 233 >UniRef50_A4CGT5 RNA polymerase sigma-70 factor n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CGT5_9FLAO Length = 236 Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 7/174 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFR 65 D ++E V GD++ F +L+ R+ + + Y+ D+ D +QEA+IKAYR L F Sbjct: 26 DPWIIEAVLGGDKELFEVLMRRHNELMYRTIRSYLSREEDIEDCMQEAYIKAYRKLRQFN 85 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA-IEAENFESGGALKEISNPENLMLS 124 +S F TWL RI +N A + +G++ + +++ EA K I NPE + + Sbjct: 86 NESQFSTWLIRIGINEAL-MRIRKGKQMLTVEINQDAEAPQIPD----KSIMNPERITMH 140 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E + I++LP ++ L+E++GL +EI+ +D V+ R+ RAR Sbjct: 141 RESLAYIEHAIDALPRKYKIVYMLKEVEGLEIKEISKSLDLSNSNVKVRLHRAR 194 >UniRef50_A9GBY9 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBY9_SORC5 Length = 206 Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 6/178 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRAL 61 E++TD+ L+ R Q GD+ AF LV R++ + + + R V + D+VQ+ F+K ++ Sbjct: 7 EEVTDEALMMRFQGGDRAAFAGLVRRHKTSIYNFILRQVRGPAIAEDLVQDVFVKIVQSA 66 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQG-RRPPSSDVDAIEAENFESGGALKEISNPE- 119 F+ ++ F TW + IA N ++L RR PS D + E + + G P+ Sbjct: 67 SDFKHEARFTTWAFAIARNVCIDHLRKMSLRRHPSLDQGSGEGGDGPTLGERTADPAPQA 126 Query: 120 ---NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 + + E+ Q + R +E LP + R LRE+ + +++IA I+ P TV+SR+ Sbjct: 127 AVDRVAIGTEMGQRIVRAVEGLPHEQREVFLLREIGHVPFKDIAHIVGVPENTVKSRM 184 >UniRef50_C6PS15 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PS15_9CLOT Length = 221 Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 101/186 (54%), Gaps = 9/186 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D+ L+ R +K D+ A L Y+ + L Y + D D+VQE +IK + ++ F Sbjct: 38 DKKLILRCKKYDKPALMELFKIYEKYLYRLCYSYCQNQQDALDLVQEIYIKIFNNINKFN 97 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS---NPENLM 122 D F+ W+ +++VN N+ +R S+V ++ E E ++ N E+ + Sbjct: 98 DDMPFHPWVRKLSVNICLNF-----KRTIKSNVVSLNGELNEDSTLEDTVASDFNVEHEI 152 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +L++I+ +++LPE+ R+ I LR + LSY EI+ ++ P+GT+++ ++RA+ + Sbjct: 153 EKMDLKRILKENLKALPENYRLVIILRYYENLSYNEISELLCKPLGTIKTDLYRAKALLK 212 Query: 183 NKVQPL 188 K++ + Sbjct: 213 KKLENI 218 >UniRef50_C6R3S7 Sigma-24 n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R3S7_9MICC Length = 227 Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 14/183 (7%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKV---ASLVSRYVPSGDVPDVVQEAFIKAYRALDS 63 D+ LV R Q GD AF LV RYQ ++ A ++ R D D+VQ+ ++A+R+L Sbjct: 43 DRYLVLRAQDGDIDAFEKLVERYQGRLFRSAYMIVRN--RQDSEDIVQDTLVQAWRSLHL 100 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 R +AF W+ +I N A + + + RR D +AE E A E+++ Sbjct: 101 VREPAAFRGWIMQICTNKATSMVRKRQRRA----TDPYDAEGLEGVSAAAEMTSSSTADP 156 Query: 124 SEELR-----QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 +E Q + + S+ +LR+ LRE+D +SYEEIA ++ V TVR R+ RAR Sbjct: 157 AESSEVNAQIQALADLLASVEPELRIVWILREIDEMSYEEIAKTLNLTVSTVRGRLARAR 216 Query: 179 EAI 181 + Sbjct: 217 SLV 219 >UniRef50_A1ZJG6 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZJG6_9SPHI Length = 191 Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 97/163 (59%), Gaps = 10/163 (6%) Query: 22 FNLLVVRYQHKVASLVSRYVPSGDVP---DVVQEAFIKAYRALDSFRGDSAFYTWLYRIA 78 F L+ +Y+ +VA+ V + G+ P DV QE FI+ Y+AL FRG++ T+L RIA Sbjct: 28 FTALIKQYEAQVAATVIGML--GNTPEADDVGQETFIRFYKALAKFRGEADVGTYLTRIA 85 Query: 79 VNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESL 138 +N + N L + R+ + ++ + N + ++EI++ EN ++ +++V R +++L Sbjct: 86 INLSLNELKKRKRKG----IFSLFSSNKQQEDYVREIAD-ENKEHHKDTQEVVQRAVQTL 140 Query: 139 PEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 R + LR +DG S +E A I++ P+GTV SR+ RA+E + Sbjct: 141 EPAFRSVVVLRMIDGYSTKETAEILNIPLGTVLSRLKRAQEKL 183 >UniRef50_Q11IY6 RNA polymerase sigma factor n=8 Tax=Alphaproteobacteria RepID=Q11IY6_MESSB Length = 244 Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 18/187 (9%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQH---KVASLVSRYVPSGDVPDVVQEAFIKAYR 59 E+L+D+ LV ++G + A LL+ R +VA V R + D+VQE ++ A+ Sbjct: 18 ERLSDEELVHLARQGGESAIRLLIKRNNRSLFRVARAVVR--DDAEAEDIVQETYVSAFT 75 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 LDSFRG S F TWL RIA+N A L +R P++++ ++ +GG++ I P Sbjct: 76 KLDSFRGHSRFSTWLTRIALNEA---LGRARKRWPAAELAELDMAEGCNGGSV--IMFPT 130 Query: 120 NL--------MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVR 171 +L + +++R ++ ++ LP+ R+ LR+++ +S EE A + TV+ Sbjct: 131 SLKPPGADAELARKQVRDLLETAVDELPDPFRLVFILRDVEEMSIEETAHQLSLKPETVK 190 Query: 172 SRIFRAR 178 +R+ RAR Sbjct: 191 TRLHRAR 197 >UniRef50_Q127J2 Sigma-24 (FecI-like) n=6 Tax=Burkholderiales RepID=Q127J2_POLSJ Length = 239 Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 7/179 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D LV G+ AF ++ RY + + S D D +QEA+++A+RAL +F Sbjct: 16 SDAELVSLSIAGNDLAFAQIMRRYNRLLFRTARSILKSEDDTQDALQEAYLRAWRALATF 75 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRR-----PPSSDVDAIEAENFESGGALKEISNPE 119 R ++ TWL RI N A L G + P S+ VDA + E E PE Sbjct: 76 RAEARLSTWLVRIVANEALGRLRRNGAQTARVVPLSASVDA-DDETPEMQMQANPNDQPE 134 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 ++ ++RQ + I++LP+ R LR ++ +S EE+A ++ P TVR+R FRAR Sbjct: 135 PSVMRAQIRQQIEARIDTLPDAFRTVFMLRGVEEMSVEEVALVLGIPEATVRTRFFRAR 193 >UniRef50_A7H7K8 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Anaeromyxobacter RepID=A7H7K8_ANADF Length = 230 Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV--PSGDVPDVVQEAFIKAYRALDSF 64 D+ +V RV GD +F LL+ R+ +V + + S DV D +Q+ ++ AYRAL +F Sbjct: 18 DEAVVHRVLAGDTASFELLMRRHNQRVYRTIRAVLRRDSADVEDAMQQTYLHAYRALAAF 77 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVD-AIEAENFESGGALKEISNPENLML 123 G S+F TWL RIA+N A ++ RR + V+ ++E + G PE+ Sbjct: 78 EGASSFGTWLTRIALNVALGFV----RRQRVAGVELSVEVDEMTRGA---RDEGPEDGAA 130 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E ++ R + L ++ R+ LRE++ LS E A ++ V+ R+ RAR A+ Sbjct: 131 RSEAAALLERAVAQLRDEHRIVFVLREVEQLSTAETAEALELSEENVKVRLHRARLAL 188 >UniRef50_A1ZQJ0 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQJ0_9SPHI Length = 205 Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 7/184 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDS 63 + D++LV + + GD+KAFN LV + +++ + +Y D+ + Q FI Y+ L Sbjct: 4 VHDEMLVNKARNGDRKAFNHLVNLWNNRIYNFTYKYFNDHDLAMEATQRTFIAVYKNLQK 63 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFES---GGALKE---ISN 117 + F +WLYRIA N RR S + + E+ G K+ +N Sbjct: 64 LEQPARFRSWLYRIASNNCHEEERRNKRRWTVSLFKSAQKAGEEAPPWGKYEKDTNRFAN 123 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P+ EL Q++ R ++ L E+ R+ + ++E +GL ++EIA + T +SR++ Sbjct: 124 PDQQYQKTELEQVLHRALKELSEEQRIVVIMKEYEGLKFKEIAEALAISENTAKSRMYYG 183 Query: 178 REAI 181 A+ Sbjct: 184 LNAL 187 >UniRef50_P66808 RNA polymerase sigma-E factor n=73 Tax=Actinobacteria (class) RepID=RPOE_MYCBO Length = 216 Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 12/141 (8%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRP---PSSDVD-- 99 D D++QE +KAY SFR + WLYRI NT N + R+P P+ + Sbjct: 53 DAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDW 112 Query: 100 --AIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYE 157 A AE+ +G E+ E L +E + +++LPE+ RMA+ +++G Y+ Sbjct: 113 QLASNAEHSSTGLRSAEVEALEALPDTE-----IKEALQALPEEFRMAVYYADVEGFPYK 167 Query: 158 EIAAIMDCPVGTVRSRIFRAR 178 EIA IMD P+GTV SR+ R R Sbjct: 168 EIAEIMDTPIGTVMSRLHRGR 188 >UniRef50_B9M8T5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8T5_GEOSF Length = 187 Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 14/191 (7%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRAL-- 61 + D +++ +Q GD +AF +LV RY + + + R V V D+ QE F+ A+R L Sbjct: 1 MEDIQVIQCIQAGDTEAFAVLVSRYHRNLLNFIYRLVRDEALVEDLGQEIFLDAFRGLRD 60 Query: 62 -DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 D RG F WL+ +A N + + A+ R D++ I E G+ I + E Sbjct: 61 FDPHRG-VPFAAWLFILARNRCISEVRARTLRN-FVDIEGIP----EPAGS---IPDAEE 111 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L L+ E R+ + R++E LPE R I L+ L G S EEIAA +GTV+SR+FRA+E Sbjct: 112 LFLAGERREALRRSLEQLPEPFRETI-LQSLAGKSLEEIAAKDGVSLGTVKSRLFRAKEG 170 Query: 181 IDNKVQPLIRR 191 + + + RR Sbjct: 171 LKALMGQIYRR 181 >UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXK5_9CLOT Length = 204 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 15/189 (7%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD---VPDVVQEAFIKAYRAL 61 L D+ LVE+V GD +AF L +Y K ++ + Y+ G+ D+VQE F++ Y + Sbjct: 15 LEDRELVEKVANGDFEAFEELFNKY--KGTAMRTAYLICGNKATSEDIVQETFVQCYLNI 72 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV--DAIEAENFESGGALKEISNPE 119 S + F TW Y+I A + + P ++ A +N ES K Sbjct: 73 GSLKNPDYFKTWFYKILTRMAWKLSKSDKKNVPIDEIFAKAEREQNHESDNMTK------ 126 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L E +IV + +L E R + L +G S +EIA ++D GTV+SR+F+AR Sbjct: 127 --CLESETVEIVRSAVNNLDEKYRAVVVLYYFNGFSVKEIANMLDVFEGTVKSRLFKARR 184 Query: 180 AIDNKVQPL 188 + K++ L Sbjct: 185 LLKGKIESL 193 >UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY18_9BACT Length = 187 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 10/176 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASL-VSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 D+VLVE V +GD AF L RY+ + L + R D D++QE FIK Y + + Sbjct: 11 DRVLVELVLQGDNIAFEYLFERYKEAIHRLFIQRTNNPLDADDLLQETFIKVYINIHRYN 70 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 F W+Y IA NT +++ + P D N + PE ++ + Sbjct: 71 PAYTFGQWVYTIARNTFVDFIRRRQEDLPIDDKFTAPPSNNPT---------PEENIIRK 121 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + R + R ++++P R I +R + SYEEIA ++ P+GTV+++I RARE + Sbjct: 122 QQRTQIERYLQAMPPRYRQLIVMRFFEEYSYEEIAMKLELPLGTVKTQIHRAREQM 177 >UniRef50_A0M2I0 RNA polymerase ECF-type sigma factor n=3 Tax=Flavobacteria RepID=A0M2I0_GRAFK Length = 186 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 7/178 (3%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDS 68 LV R + GD++A + RY + + R S + D++QE+F+ A+ ++SF+ +S Sbjct: 11 LVARCRHGDERAQMEIYDRYYKAMYNTAYRITGHSAEAEDIMQESFLNAFTKIESFKENS 70 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 F WL RI VN + + S DA++ E + G +L E + N + Sbjct: 71 TFGAWLKRIVVNESITAYKKITKLGEVSYNDALKNEADDGGVSLNE-DDKNNTKV----- 124 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 +++ + I SL E+ R+ +TL ++G YEEI IM+ R+ I RA+E++ K+Q Sbjct: 125 RLILQQIRSLKENYRLGLTLHLIEGYDYEEICEIMNISYANCRTMISRAKESLRKKLQ 182 >UniRef50_D1TN86 RNA polymerase sigma factor n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TN86_9BURK Length = 294 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 16/144 (11%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV------ 98 D DVVQEAF++A+R D+FRGDSA WL I T + RR PS D+ Sbjct: 55 DAEDVVQEAFMRAFRFFDTFRGDSA-RPWLLAIVRRT---WYTEWRRRAPSHDMLEFDET 110 Query: 99 -DAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYE 157 D + + +GG +P+ L++ +E ++V + LP + R + LREL+ + Y Sbjct: 111 MDDATLDGWSAGG-----DDPQTLLIRDEDVRLVHDALALLPVEYREVLILRELEEMGYR 165 Query: 158 EIAAIMDCPVGTVRSRIFRAREAI 181 EIA + D P+GTV SR+ R R + Sbjct: 166 EIAVVADVPIGTVMSRLARGRRKL 189 >UniRef50_C1ZMC3 RNA polymerase sigma factor n=3 Tax=Planctomycetaceae RepID=C1ZMC3_PLALI Length = 208 Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 23/189 (12%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFR 65 D L+ R ++GD AF+ LV YQ ++ ++ V D+ QE F++ YRA +S+ Sbjct: 20 DVQLMLRAKQGDDAAFSQLVAAYQDRLVGILHHLVQDQQTAEDLAQEVFLRIYRARESYV 79 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + F TWL+++A N A N +GRR I ESG S PE ++ E Sbjct: 80 ATARFSTWLFKVANNLASNSRRNKGRRKE------ISLAGNESGSM---GSRPEEQLVVE 130 Query: 126 -------------ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 EL+ V +E L RMA+ L + +G+SY +IA MD V+S Sbjct: 131 KSALMPARQLDKAELQAAVRAAMEQLNSRQRMAVLLHKFEGMSYADIAETMDLTQPAVKS 190 Query: 173 RIFRAREAI 181 + RARE + Sbjct: 191 LLARARENL 199 >UniRef50_Q67JY6 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67JY6_SYMTH Length = 176 Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 14/167 (8%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D +++ Q+G + F+ LV YQ +V +V D D+ QE F++ RA+DS Sbjct: 4 DASIIQLCQQGHRAGFSRLVEAYQERVYRTAYAFVQHREDAQDLTQEVFLRTVRAIDSLD 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + WL R+ N A ++L + RR S D EA + G + P ML Sbjct: 64 AGRPLWPWLRRVTTNLALSHL--KRRRGHLSLDDLPEAALLVAHG-----TEPAWTMLDL 116 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 E R + LP RMA+ LR +GL+YEEIA ++D PVGTV++ Sbjct: 117 E------RALADLPPLWRMALVLRHQEGLAYEEIARMLDLPVGTVKT 157 >UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8D0 Length = 187 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGD 67 LV R ++GD AF LV R++ K+ R + D DVVQ+ ++A+++L++ Sbjct: 12 TLVVRAREGDIDAFESLVDRHETKLLRFCLRTLGDRQDAEDVVQDTLVQAWKSLNALSEP 71 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 +AF TW+YR+A N + L + RP + D + G A E S L Sbjct: 72 AAFGTWIYRLASNKCTDMLRRRMARPSDAQ-DPDDMSIHPDGRASVEKSVEARTAL---- 126 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 Q +++L + R+A L +++GLSY E+AA + G+VR RI RAR A+ Sbjct: 127 -QHFSSVLQTLSSEQRVAWVLHQMEGLSYAEVAATLGISEGSVRGRIHRARTAV 179 >UniRef50_B1M4F7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Rhizobiales RepID=B1M4F7_METRJ Length = 180 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 80/142 (56%), Gaps = 8/142 (5%) Query: 45 DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPS---SDVDAI 101 D DV+QEA ++AYRA++ F +A W I NT ++L Q RP + +D A Sbjct: 33 DAEDVMQEACLRAYRAIEGFAEGNA-RAWFLTIVRNTGYSWL--QRHRPRAVVFADDLAP 89 Query: 102 EAE-NFESGGALKEI-SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEI 159 EA E GGAL E PE +++ + + R +E+LP R A+ LRE GLSY EI Sbjct: 90 EARAELEIGGALTEAPETPEATLIARDDAGQLARAVEALPVAFREALVLREYHGLSYREI 149 Query: 160 AAIMDCPVGTVRSRIFRAREAI 181 A + P+GTV SR+ RAR+ + Sbjct: 150 ATVTGVPIGTVMSRLGRARQHL 171 >UniRef50_Q1DAR4 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DAR4_MYXXD Length = 199 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 9/183 (4%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRG 66 Q LV R+Q+GD AF L Q + + V + DV D++QEA+++ A+ S+RG Sbjct: 13 QALVRRIQEGDLTAFEQLYALTQADASRTLWHLVGNRVDVEDLLQEAYLRLLTAVKSYRG 72 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 +S F T+ YR+ N A ++L + RRP S D E A+ E +PE + + Sbjct: 73 ESRFRTFFYRVCSNVALSHLRWKRRRPEDSVWDLPE--------AVAEGDDPERVASRRQ 124 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++V +E L R+ EL G+S +EIA + TVRSR+ AR + +Q Sbjct: 125 AARLVELALERLKPKKRIVFVYYELCGMSPDEIADAVGSSPNTVRSRLHHARLEFNEAMQ 184 Query: 187 PLI 189 L+ Sbjct: 185 RLL 187 >UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISX0_ACIBL Length = 200 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 14/178 (7%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF-RGDS 68 V R GD A+ +V + ++ +L R+ S D D+ QE FIK YR L SF G + Sbjct: 11 VRRCVAGDTAAWEDIVRQTNRRIYNLCYRFSGSPDDAQDLTQEVFIKIYRTLGSFDSGKA 70 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDV-DAIEA--ENFESGGAL-KEISN----PEN 120 +F TW+ + +N LV R+ + D+++A + E G AL +I++ P+ Sbjct: 71 SFVTWVTTVT----RNLLVDHFRKGKYDRMTDSLDAPMGDEEDGLALGSQIADKGQTPDE 126 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + S E +++V + ++ L +LR A+ LR+L + Y+EI+ I+ P GTV+SRI R R Sbjct: 127 RLESRETKELVHKALQKLSPELREAVILRDLQDMDYKEISQILKIPEGTVKSRINRGR 184 >UniRef50_C6X3F9 RNA polymerase sigma factor n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X3F9_FLAB3 Length = 185 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 96/173 (55%), Gaps = 10/173 (5%) Query: 15 QKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFRGDSAFYTW 73 +K +K +++ YQ ++ + R + + DV+Q++FIKAY+ F+ DS YTW Sbjct: 15 EKTREKGVRMMMDAYQSRLYWHIRRIIVDHSLAQDVLQDSFIKAYQNFHQFKQDSQLYTW 74 Query: 74 LYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFR 133 LYRIA N + L + +R +D D E + +S PE +E+++ ++ + Sbjct: 75 LYRIATNESLQQL-NKLKRMQKTDED---PEYYLQNMVADNVS-PE----AEDIQILLQK 125 Query: 134 TIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 I SLPE ++ T+R + L YE+++ I+D VGT+++ A++ +++ ++ Sbjct: 126 AIHSLPEKQKLVFTMRYYEELPYEDMSQILDMSVGTLKTNYHYAKQKVEDYIK 178 >UniRef50_C1AC29 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC29_GEMAT Length = 192 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 13/190 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYR 59 M+ TD +V R +GD++A LL ++ V ++V R D+ D+ QE +I+ +R Sbjct: 1 MNAMETDAAIVRRAIEGDERAMRLLWNQHAPHVDAVVRRLAGDPDLAQDIAQEVWIQIFR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL S+RGD+ F TW++R+A+N N + R + +E E +++ + E Sbjct: 61 ALPSWRGDAKFSTWIHRVAINRTLNAMRRVKR------LSTVETAIEEDSAVVEQ--DAE 112 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ML+ Q + + L R L +++G ++EEIA + G +S++F+AR Sbjct: 113 RSMLA----QTIAEATQRLSPGARTVFLLHDVEGYTHEEIATELGITAGGSKSQLFKARA 168 Query: 180 AIDNKVQPLI 189 + + PL+ Sbjct: 169 KLRRLLAPLV 178 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AGB8 RNA polymerase sigma-E factor n=237 Tax=Proteoba... 290 2e-77 UniRef50_Q47WN8 RNA polymerase sigma factor n=20 Tax=Gammaproteo... 256 3e-67 UniRef50_Q06198 RNA polymerase sigma-H factor n=265 Tax=cellular... 247 1e-64 UniRef50_Q2SL40 RNA polymerase sigma factor AlgU n=4 Tax=Proteob... 240 1e-62 UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily ... 227 2e-58 UniRef50_A4BBJ0 RNA polymerase sigma factor n=1 Tax=Reinekea bla... 226 3e-58 UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 225 7e-58 UniRef50_A3DDU5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 225 7e-58 UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily ... 221 1e-56 UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=... 220 2e-56 UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma su... 216 2e-55 UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily ... 214 1e-54 UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 214 1e-54 UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter... 214 1e-54 UniRef50_A9BNK1 RNA polymerase sigma factor n=12 Tax=Proteobacte... 214 1e-54 UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=M... 212 7e-54 UniRef50_B1ZTI0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 211 1e-53 UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily ... 211 1e-53 UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily ... 210 1e-53 UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 210 2e-53 UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacet... 209 3e-53 UniRef50_Q67KY4 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 209 6e-53 UniRef50_B8I3Y9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 208 7e-53 UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacte... 208 9e-53 UniRef50_UPI00016939CD RNA polymerase ECF-type sigma factor n=1 ... 207 1e-52 UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacill... 205 4e-52 UniRef50_Q0AVE0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 205 6e-52 UniRef50_A4GHT6 RNA polymerase sigma-70 factor n=1 Tax=unculture... 205 6e-52 UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=S... 205 8e-52 UniRef50_B5YDF0 RNA polymerase sigma-E factor n=2 Tax=Dictyoglom... 204 2e-51 UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 203 2e-51 UniRef50_B3DXV9 DNA-directed RNA polymerase specialized sigma su... 202 4e-51 UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium El... 202 7e-51 UniRef50_Q1INR3 Sigma-24, ECF subfamily n=3 Tax=cellular organis... 200 2e-50 UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex de... 200 2e-50 UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 200 2e-50 UniRef50_A4A074 RNA polymerase sigma factor, sigma-70 family pro... 199 3e-50 UniRef50_B4D0E9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 199 4e-50 UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 199 5e-50 UniRef50_B7R6J3 RNA polymerase sigma factor, sigma-70 family n=5... 198 7e-50 UniRef50_A6NW06 Putative uncharacterized protein n=1 Tax=Bactero... 198 9e-50 UniRef50_B9XG21 RNA polymerase, sigma-24 subunit, ECF subfamily ... 197 1e-49 UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2... 197 2e-49 UniRef50_A6GDP6 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 197 2e-49 UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured ma... 197 2e-49 UniRef50_Q01QB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 196 3e-49 UniRef50_A5V1V8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 196 4e-49 UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella the... 195 6e-49 UniRef50_B5VYK7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 195 7e-49 UniRef50_Q1D378 RNA polymerase sigma-70 factor, ECF subfamily n=... 195 8e-49 UniRef50_C1AEN0 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 194 1e-48 UniRef50_B1I6K2 RNA polymerase sigma factor n=5 Tax=Clostridiale... 194 1e-48 UniRef50_C5CIP4 RNA polymerase sigma factor n=1 Tax=Kosmotoga ol... 194 1e-48 UniRef50_Q2RYX7 Extracytoplasmic function alternative sigma fact... 194 2e-48 UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF sub... 193 3e-48 UniRef50_A6C5N0 RNA polymerase sigma factor RpoE n=1 Tax=Plancto... 193 3e-48 UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobact... 193 3e-48 UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 192 4e-48 UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 192 4e-48 UniRef50_A0LHW6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 192 6e-48 UniRef50_Q01Z55 RNA polymerase, sigma-24 subunit, ECF subfamily ... 192 7e-48 UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 192 7e-48 UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 8e-48 UniRef50_C6CUE1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 9e-48 UniRef50_Q1CYD9 RNA polymerase sigma-70 factor, ECF subfamily n=... 191 1e-47 UniRef50_B7KDZ7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 1e-47 UniRef50_Q2LQI1 Sigma factor n=1 Tax=Syntrophus aciditrophicus S... 190 2e-47 UniRef50_C1ZDS5 RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=P... 190 2e-47 UniRef50_Q11XN6 RNA polymerase, ECF-type sigma factor n=1 Tax=Cy... 190 2e-47 UniRef50_A2U163 RNA polymerase sigma factor n=1 Tax=Polaribacter... 190 2e-47 UniRef50_A9G0E6 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 190 2e-47 UniRef50_Q1IHX3 Sigma-24, ECF subfamily n=3 Tax=Acidobacteria Re... 189 4e-47 UniRef50_D2MK89 RNA polymerase, sigma-24 subunit, ECF subfamily ... 189 5e-47 UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 188 5e-47 UniRef50_B8JDV3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 188 7e-47 UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacte... 188 8e-47 UniRef50_C0ZBY3 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 188 1e-46 UniRef50_C7PJ26 RNA polymerase, sigma-24 subunit, ECF subfamily ... 187 2e-46 UniRef50_C1F7G4 RNA polymerase sigma factor n=1 Tax=Acidobacteri... 187 2e-46 UniRef50_Q1IJV0 Sigma-24, ECF subfamily n=2 Tax=Acidobacteria Re... 187 2e-46 UniRef50_Q01V29 RNA polymerase, sigma-24 subunit, ECF subfamily ... 187 2e-46 UniRef50_D0MJ41 RNA polymerase, sigma-24 subunit, ECF subfamily ... 187 3e-46 UniRef50_A7HKZ1 RNA polymerase sigma factor n=1 Tax=Fervidobacte... 186 3e-46 UniRef50_A9BGN8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 186 3e-46 UniRef50_Q67K53 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 186 4e-46 UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 186 4e-46 UniRef50_Q11VU6 RNA polymerase sigma-24 factor n=3 Tax=Sphingoba... 186 4e-46 UniRef50_D2QJ11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 186 4e-46 UniRef50_UPI00016C0B7C RNA polymerase ECF-type sigma factor n=1 ... 186 4e-46 UniRef50_Q67KL8 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 185 5e-46 UniRef50_C0ZCF1 RNA polymerase ECF-type sigma factor n=3 Tax=cel... 185 6e-46 UniRef50_A0LYR6 RNA polymerase sigma factor n=1 Tax=Gramella for... 185 6e-46 UniRef50_B3QZ33 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 7e-46 UniRef50_A6G087 RNA polymerase sigma-E factor n=1 Tax=Plesiocyst... 185 7e-46 UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 185 8e-46 UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus S... 185 8e-46 UniRef50_B3E7K8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 9e-46 UniRef50_B7IH95 RNA polymerase sigma factor n=7 Tax=Thermotogace... 185 9e-46 UniRef50_A1HLQ9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 9e-46 UniRef50_Q93RF4 Orf protein n=1 Tax=Treponema medium RepID=Q93RF... 185 1e-45 UniRef50_C4KZK8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 184 1e-45 UniRef50_C8R1R3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 184 1e-45 UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 184 1e-45 UniRef50_B2UN43 RNA polymerase, sigma-24 subunit, ECF subfamily ... 184 2e-45 UniRef50_A8TRK4 Sigma-24, ECF subfamily protein n=1 Tax=alpha pr... 184 2e-45 UniRef50_Q8DM09 Group3 RNA polymerase sigma factor n=2 Tax=Cyano... 183 2e-45 UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacter... 183 2e-45 UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrired... 183 2e-45 UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinom... 183 2e-45 UniRef50_A6GAU3 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 183 2e-45 UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 183 2e-45 UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1... 183 2e-45 UniRef50_B8I824 RNA polymerase, sigma-24 subunit, ECF subfamily ... 183 3e-45 UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus ... 183 3e-45 UniRef50_C1ZG18 RNA polymerase sigma factor, sigma-70 family n=1... 183 3e-45 UniRef50_C6N7I6 RNA polymerase sigma E factor RpoE n=2 Tax=Legio... 183 4e-45 UniRef50_Q97E49 Specialized sigma subunit of RNA polymerase n=1 ... 182 4e-45 UniRef50_C8PSN5 RNA polymerase sigma factor, sigma-70 family n=1... 182 5e-45 UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 182 6e-45 UniRef50_D2Q537 RNA polymerase, sigma-24 subunit, ECF subfamily ... 182 6e-45 UniRef50_D1CFG7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 182 7e-45 UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family prote... 182 7e-45 UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=... 182 8e-45 UniRef50_D1C360 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 181 8e-45 UniRef50_A5FKW0 RNA polymerase sigma factor n=4 Tax=Flavobacteri... 181 9e-45 UniRef50_Q2BEM6 RNA polymerase sigma factor n=1 Tax=Bacillus sp.... 181 1e-44 UniRef50_A0LQ54 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 181 1e-44 UniRef50_A6TSA9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus... 181 1e-44 UniRef50_Q2IIH1 Sigma-24 (FecI-like) n=4 Tax=Anaeromyxobacter Re... 181 1e-44 UniRef50_D1C1C9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 181 1e-44 UniRef50_C0Z9P5 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 181 1e-44 UniRef50_B4WJK4 RNA polymerase sigma factor, sigma-70 family n=1... 180 1e-44 UniRef50_A6LL38 RNA polymerase, sigma-24 subunit, ECF subfamily ... 180 2e-44 UniRef50_A6EDP4 Putative RNA polymerase sigma factor n=1 Tax=Ped... 180 2e-44 UniRef50_C0ZGW3 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 180 2e-44 UniRef50_A0LEX1 Transcriptional regulator, Fis family n=1 Tax=Sy... 180 2e-44 UniRef50_A5GDM9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 180 2e-44 UniRef50_B9XQJ1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 180 2e-44 UniRef50_Q01Q68 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 180 2e-44 UniRef50_Q5X4Y5 Sigma factor RpoE (Sigma 24) n=5 Tax=Legionella ... 180 3e-44 UniRef50_C1A5K6 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 180 3e-44 UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 179 3e-44 UniRef50_C1SKR1 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 179 4e-44 UniRef50_Q7NFE2 Glr3584 protein n=1 Tax=Gloeobacter violaceus Re... 179 5e-44 UniRef50_A1ZQJ0 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 178 8e-44 UniRef50_B9L046 Group3 RNA polymerase sigma factor n=2 Tax=Therm... 178 8e-44 UniRef50_D0LKU5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 1e-43 UniRef50_Q1IQR2 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 178 1e-43 UniRef50_A9GBY9 ECF-family RNA polymerase sigma factor n=1 Tax=S... 178 1e-43 UniRef50_C7ICT2 RNA polymerase sigma factor n=1 Tax=Clostridium ... 178 1e-43 UniRef50_Q7MU87 RNA polymerase sigma-70 factor, ECF subfamily n=... 178 1e-43 UniRef50_Q47E65 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Dech... 177 1e-43 UniRef50_A5UX09 RNA polymerase, sigma-24 subunit, ECF subfamily ... 177 1e-43 UniRef50_Q127J2 Sigma-24 (FecI-like) n=6 Tax=Burkholderiales Rep... 177 1e-43 UniRef50_D2QGU1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 177 1e-43 UniRef50_B3EM30 RNA polymerase sigma factor n=8 Tax=Chlorobiacea... 177 2e-43 UniRef50_Q73K99 RNA polymerase sigma-24 factor, putative n=1 Tax... 177 2e-43 UniRef50_A4XDI9 Sigma-70 region 2 domain protein n=16 Tax=Actino... 177 2e-43 UniRef50_Q1IS06 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 177 3e-43 UniRef50_A4CQ62 RNA polymerase sigma-70 factor, ECF subfamily pr... 177 3e-43 UniRef50_C5D220 RNA polymerase, sigma-24 subunit, ECF subfamily ... 176 3e-43 UniRef50_Q5YXA9 Putative sigma factor n=1 Tax=Nocardia farcinica... 175 5e-43 UniRef50_C6CYB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 5e-43 UniRef50_B0P2V0 RNA polymerase sigma factor n=1 Tax=Clostridium ... 175 5e-43 UniRef50_D2QRT0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 5e-43 UniRef50_C0Z4C2 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 175 5e-43 UniRef50_B8GD43 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 6e-43 UniRef50_C0ZJR5 RNA polymerase ECF-type sigma factor n=2 Tax=Bre... 175 7e-43 UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizob... 175 8e-43 UniRef50_UPI00016C5256 RNA polymerase ECF-type sigma factor n=1 ... 175 8e-43 UniRef50_C8XA65 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 8e-43 UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 1e-42 UniRef50_Q82IU5 RNA polymerase sigma factor n=3 Tax=Streptomyces... 174 1e-42 UniRef50_Q1IUC0 RNA polymerase sigma factor n=1 Tax=Candidatus K... 174 1e-42 UniRef50_C6XIM9 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 174 1e-42 UniRef50_Q1AVA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 174 1e-42 UniRef50_Q01NU7 RNA polymerase sigma factor n=1 Tax=Candidatus S... 174 1e-42 UniRef50_A0LD14 RNA polymerase sigma factor n=1 Tax=Magnetococcu... 174 1e-42 UniRef50_Q3B236 Sigma-24 (FecI-like) n=3 Tax=Chlorobiaceae RepID... 174 1e-42 UniRef50_A4CGT5 RNA polymerase sigma-70 factor n=1 Tax=Robiginit... 174 1e-42 UniRef50_D1CIE7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 174 1e-42 UniRef50_Q1AXP8 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 174 2e-42 UniRef50_B8FW34 RNA polymerase, sigma-24 subunit, ECF subfamily ... 174 2e-42 UniRef50_B8I5U3 RNA polymerase sigma factor n=3 Tax=Clostridiale... 173 2e-42 UniRef50_Q11IY6 RNA polymerase sigma factor n=8 Tax=Alphaproteob... 173 2e-42 UniRef50_B4RD59 RNA polymerase sigma factor n=1 Tax=Phenylobacte... 173 2e-42 UniRef50_Q0AXN3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 173 2e-42 UniRef50_C4ZMF7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 173 2e-42 UniRef50_Q6MPU7 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 173 2e-42 UniRef50_Q01YV2 RNA polymerase sigma factor n=1 Tax=Candidatus S... 173 2e-42 UniRef50_C1F2L1 RNA polymerase sigma factor n=1 Tax=Acidobacteri... 173 3e-42 UniRef50_A9G8Q1 ECF-family RNA polymerase sigma factor n=1 Tax=S... 173 3e-42 UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostri... 173 3e-42 UniRef50_Q0VMH1 Rna polymerase sigma-e factor (Sigma-24) n=2 Tax... 173 3e-42 UniRef50_D0LYF8 RNA polymerase sigma factor n=1 Tax=Haliangium o... 173 3e-42 UniRef50_A4FAV7 Putative RNA polymerase sigma factor n=1 Tax=Sac... 173 4e-42 UniRef50_A4ARC6 RNA polymerase sigma-70 factor n=2 Tax=unclassif... 173 4e-42 UniRef50_A7HAL3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 4e-42 UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 5e-42 UniRef50_A6C0F8 RNA polymerase sigma factor n=1 Tax=Planctomyces... 172 5e-42 UniRef50_Q1D4D9 RNA polymerase sigma-70 factor, ECF subfamily n=... 172 5e-42 UniRef50_A1ZJQ1 RNA polymerase sigma-70 factor, ECF subfamily n=... 172 5e-42 UniRef50_D2QZ03 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 6e-42 UniRef50_Q7UFL5 RNA polymerase sigma factor n=1 Tax=Rhodopirellu... 172 7e-42 UniRef50_C1ZLA9 RNA polymerase sigma factor, sigma-70 family n=1... 172 7e-42 UniRef50_A7BEQ0 Putative uncharacterized protein n=1 Tax=Actinom... 172 8e-42 UniRef50_A7H7K8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 8e-42 UniRef50_C0A3E7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 8e-42 UniRef50_A8L8U8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 172 8e-42 UniRef50_C5RPF9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 171 1e-41 UniRef50_UPI000197305F RNA polymerase ECF-type sigma factor n=1 ... 171 1e-41 UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostri... 171 1e-41 UniRef50_B4V9J8 RNA polymerase sigma factor SigM n=8 Tax=Strepto... 171 1e-41 UniRef50_B1ZRM6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 171 1e-41 UniRef50_Q67R01 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 171 1e-41 UniRef50_Q47W09 RNA polymerase sigma-70 factor, ECF subfamily n=... 170 2e-41 UniRef50_UPI00016C361F RNA polymerase ECF-type sigma factor n=1 ... 170 2e-41 UniRef50_C3KMI0 RNA polymerase sigma factor n=1 Tax=Rhizobium sp... 170 2e-41 UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistip... 170 2e-41 UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor... 170 2e-41 UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 170 2e-41 UniRef50_A8W1I0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 2e-41 UniRef50_C6XPB4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 2e-41 UniRef50_D1BAR5 RNA polymerase sigma factor, sigma-70 family n=1... 170 2e-41 UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 170 3e-41 UniRef50_Q5NZC6 ECF-family RNA polymerase sigma factor n=1 Tax=A... 170 3e-41 UniRef50_Q21I12 Sigma-70 region 2 n=1 Tax=Saccharophagus degrada... 170 3e-41 UniRef50_P66808 RNA polymerase sigma-E factor n=73 Tax=Actinobac... 169 4e-41 UniRef50_B1HXE6 RNA polymerase sigma factor Y n=3 Tax=Bacillacea... 169 4e-41 UniRef50_UPI00018742C8 ECF-family sigma factor W n=1 Tax=Coryneb... 169 4e-41 UniRef50_C1ABI4 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 169 4e-41 UniRef50_Q3APD6 RNA polymerase sigma factor n=10 Tax=Chlorobiace... 169 5e-41 UniRef50_C3BA74 Putative uncharacterized protein n=3 Tax=Bacillu... 169 5e-41 UniRef50_C1AC29 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 169 5e-41 UniRef50_C1ZMC3 RNA polymerase sigma factor n=3 Tax=Planctomycet... 169 5e-41 UniRef50_Q02BU8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 6e-41 UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira R... 168 6e-41 UniRef50_Q4PK18 RNA polymerase sigma factor n=1 Tax=uncultured b... 168 7e-41 UniRef50_Q2IU66 Sigma-24 (FecI-like) n=29 Tax=Rhizobiales RepID=... 168 7e-41 UniRef50_A5CQL0 RNA polymerase sigma factor n=4 Tax=Actinomyceta... 168 8e-41 UniRef50_A6W8E3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 8e-41 UniRef50_D2NSB5 DNA-directed RNA polymerase, sigma subunit n=3 T... 168 9e-41 UniRef50_Q5L9L9 RNA polymerase sigma factor n=32 Tax=Bacteroidal... 168 9e-41 UniRef50_C6PS15 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 1e-40 UniRef50_B3DVU8 RNA polymerase sigma factor n=1 Tax=Methylacidip... 168 1e-40 Sequences not found previously or not previously below threshold: UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6... 184 1e-45 UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Coryneb... 178 6e-44 UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 169 4e-41 UniRef50_B9XGS8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 169 4e-41 UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 168 9e-41 >UniRef50_P0AGB8 RNA polymerase sigma-E factor n=237 Tax=Proteobacteria RepID=RPOE_ECO57 Length = 191 Score = 290 bits (743), Expect = 2e-77, Method: Composition-based stats. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA Sbjct: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN Sbjct: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA Sbjct: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 Query: 181 IDNKVQPLIRR 191 IDNKVQPLIRR Sbjct: 181 IDNKVQPLIRR 191 >UniRef50_Q47WN8 RNA polymerase sigma factor n=20 Tax=Gammaproteobacteria RepID=Q47WN8_COLP3 Length = 208 Score = 256 bits (655), Expect = 3e-67, Method: Composition-based stats. Identities = 128/191 (67%), Positives = 166/191 (86%), Gaps = 1/191 (0%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 SE DQ LVERVQ+GD+ AFNLLV +YQHKVA+LVSRYV + DVPD+VQEAFIKAYRA Sbjct: 16 SEPNIDQQLVERVQRGDKNAFNLLVTKYQHKVANLVSRYVKNHSDVPDIVQEAFIKAYRA 75 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L +FRGDSAFYTWLYRIAVN AKN+ VA GR+PPS+DV+ +AE +++G AL+E ++PE Sbjct: 76 LPNFRGDSAFYTWLYRIAVNCAKNHSVALGRKPPSNDVEISDAELYDTGDALRENASPEK 135 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++L+ E+++++F T+ESLP+DLR+AI RE++GLSYEEIA IM+CPVGTVRSRIFRAR+A Sbjct: 136 ILLTAEIKKVIFSTMESLPDDLRLAINFREIEGLSYEEIATIMECPVGTVRSRIFRARDA 195 Query: 181 IDNKVQPLIRR 191 ID K++PL+++ Sbjct: 196 IDKKIRPLLQK 206 >UniRef50_Q06198 RNA polymerase sigma-H factor n=265 Tax=cellular organisms RepID=RPSH_PSEAE Length = 193 Score = 247 bits (632), Expect = 1e-64, Method: Composition-based stats. Identities = 126/191 (65%), Positives = 153/191 (80%), Gaps = 1/191 (0%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 M Q DQ LVERVQ+GD++AF+LLV++YQHK+ L+ R+V + DV QEAFIKAYR Sbjct: 1 MLTQEQDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDAQEAQDVAQEAFIKAYR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FRGDSAFYTWLYRIA+NTAKN+LVA+GRRPP SDV A +AE FE ALK+I +PE Sbjct: 61 ALGNFRGDSAFYTWLYRIAINTAKNHLVARGRRPPDSDVTAEDAEFFEGDHALKDIESPE 120 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ML +E+ V +TI+ LPEDLR A+TLRE +GLSYE+IA +M CPVGTVRSRIFRARE Sbjct: 121 RAMLRDEIEATVHQTIQQLPEDLRTALTLREFEGLSYEDIATVMQCPVGTVRSRIFRARE 180 Query: 180 AIDNKVQPLIR 190 AID +QPL+R Sbjct: 181 AIDKALQPLLR 191 >UniRef50_Q2SL40 RNA polymerase sigma factor AlgU n=4 Tax=Proteobacteria RepID=Q2SL40_HAHCH Length = 222 Score = 240 bits (615), Expect = 1e-62, Method: Composition-based stats. Identities = 115/187 (61%), Positives = 154/187 (82%), Gaps = 1/187 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 TDQ LVERVQ+GD++AF++LVV+YQ KV ++++RY+ +V DV QEAFIKAY+AL +F Sbjct: 32 TDQQLVERVQRGDKRAFDMLVVKYQSKVMAIIARYIRDHHEVMDVAQEAFIKAYKALANF 91 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG+SAFYTWLYRIA+N AKN+L+AQGRRPP DVDA +A +E G ALK+I +PE + Sbjct: 92 RGESAFYTWLYRIAINAAKNHLMAQGRRPPGEDVDADDAVLYEGGSALKDIDSPERQVHR 151 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ++++Q +F+ ++ LPEDLR A+TLRE DGLSYEEIA IM CPVGTVRSRIFRAR+A+D + Sbjct: 152 DQVKQAIFQALDELPEDLRSALTLREFDGLSYEEIAEIMQCPVGTVRSRIFRARDAVDAR 211 Query: 185 VQPLIRR 191 + P++ + Sbjct: 212 IAPMLEQ 218 >UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A648_NATTJ Length = 206 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 65/182 (35%), Positives = 107/182 (58%), Gaps = 2/182 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 D+ LV++ Q G AF LV +Y KV SL R+ + D D+ QEAFI+ Y +++ F Sbjct: 7 NDEFLVKQCQNGHLDAFEELVHKYHQKVYSLCYRFSGNHDDANDLAQEAFIRVYHSINKF 66 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLML 123 SAF TWLYR+ N + + + R+ S +E ++ E L + NPE + Sbjct: 67 HFKSAFSTWLYRVTSNVCLDEMRKRKRKSSVSLDSPMETDDGELYFNLPDQKFNPELMAE 126 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +++++IV + I+ LP+D ++ + LRE++G SY+E+A +M+ VGTV+SR+ RAR + Sbjct: 127 RKDVQEIVHKAIQELPKDQKLTLLLREMEGFSYDEMAEVMNVSVGTVKSRLSRARNNLKE 186 Query: 184 KV 185 + Sbjct: 187 IL 188 >UniRef50_A4BBJ0 RNA polymerase sigma factor n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ0_9GAMM Length = 203 Score = 226 bits (577), Expect = 3e-58, Method: Composition-based stats. Identities = 104/191 (54%), Positives = 140/191 (73%), Gaps = 2/191 (1%) Query: 1 MSEQLT-DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAY 58 M+E + DQ+LV++ QKGD +AF+LLV++YQHKVAS+VSR V D + D+VQEAF+KAY Sbjct: 1 MTESVDVDQLLVQKAQKGDSRAFDLLVLKYQHKVASVVSRLVNEPDTIEDIVQEAFVKAY 60 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118 RAL FRGDSAF+TWLYRIA NTAKN+L RRP D E +S +L+E P Sbjct: 61 RALPGFRGDSAFFTWLYRIATNTAKNHLETLSRRPSYRGQDIDEVTLVDSPASLREFDTP 120 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + L+ +L Q + T+ LPEDLR+A+TLRE +G+SY+EI+ IM+ P+GTVRSRIFRAR Sbjct: 121 DGLLARGQLEQRLQSTLSELPEDLRVALTLREFEGMSYQEISTIMETPIGTVRSRIFRAR 180 Query: 179 EAIDNKVQPLI 189 E I+ ++ ++ Sbjct: 181 EIIERELHSVM 191 >UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S9_HALOH Length = 195 Score = 225 bits (574), Expect = 7e-58, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 2/185 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D+ ++ + G+++ F LV +YQ KV + R + + D D+ QEAFIK +R L F Sbjct: 5 SDEKIINMILAGEKELFARLVEKYQRKVYNTTYRMLGNSEDASDLTQEAFIKTFRNLKRF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLML 123 RG ++F TWL+ I N ++ L + RR S + E +K+ S PE+L + Sbjct: 65 RGKASFSTWLFTITTNLCRDELRKRQRRSASPHFPDGQHFMSEDIENIKDNSKVPEDLYM 124 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E + R I LP D + I LR++ G SY+EI+ I+ P+GTV+SR+ RAR+++ Sbjct: 125 GRETMASIQRAINKLPADQKEVIVLRDIQGFSYKEISEIIGVPMGTVKSRLSRARKSLQK 184 Query: 184 KVQPL 188 ++ + Sbjct: 185 HLKNI 189 >UniRef50_A3DDU5 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Clostridium thermocellum RepID=A3DDU5_CLOTH Length = 220 Score = 225 bits (574), Expect = 7e-58, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 2/184 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +++ L++R +KGD +AF L+ Q KV ++ R + + D ++ QE F+KAY+++ +F Sbjct: 26 SEKELIKRAKKGDVEAFEQLIEGCQKKVFNIALRMLGNYDDASELAQEVFLKAYKSIKNF 85 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL-KEISNPENLML 123 +GDS F TW+Y++ N + + + + + IE E + + PE Sbjct: 86 KGDSLFNTWIYKVTTNACLDEIRKRKNKKVVYLDEDIELGGNEIKRQIKDDSPGPELKAE 145 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EL++ V +I LPE+ R I LR++ G +YEEIA I+ CP GTV+SRI RAR+A+ Sbjct: 146 DNELKRAVMDSINMLPEEYRTVIVLRDIQGFTYEEIANIIKCPEGTVKSRINRARQALKK 205 Query: 184 KVQP 187 +Q Sbjct: 206 ILQQ 209 >UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B9XS45_9BACT Length = 216 Score = 221 bits (564), Expect = 1e-56, Method: Composition-based stats. Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 3/189 (1%) Query: 5 LTDQ-VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 LTD+ LVER + GD A++ LV RYQ ++ + V + D D+ QE+FIKA++AL Sbjct: 28 LTDEMQLVERARNGDMAAYDDLVRRYQERIYATVYHMTSNHEDANDLAQESFIKAFQALK 87 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVD-AIEAENFESGGALKEISNPENL 121 SF+G S+FYTW+YRIAVN N+L + R S D AE+ AL P Sbjct: 88 SFKGGSSFYTWIYRIAVNKTINFLKQRKNRAQMSLNDLDFNAEHDPDLVALISDKTPRRD 147 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + EL++ + + L E R+ +TL ++ GLS+EEIA IMDC +GTVRSR+F AR+ + Sbjct: 148 IGLSELQEKLNAALLKLSEHHRLVVTLHDVQGLSHEEIAKIMDCNIGTVRSRLFYARQQL 207 Query: 182 DNKVQPLIR 190 + ++ Sbjct: 208 QAYLSDYLK 216 >UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017466F3 Length = 202 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 2/183 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D LV R Q GD +AF+ LV RY+ KV + V + D D+ QEAFIKA+RAL SF+ Sbjct: 15 DSDLVRRAQAGDARAFDSLVTRYRGKVYGMCYHLVQNEQDAWDLAQEAFIKAWRALPSFK 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-PENLMLS 124 GD++FYTW+YRIA N+ ++L + D +A + + + P+ + + Sbjct: 75 GDASFYTWIYRIAHNSTYDWLRKRKIEGAGEFDDERQAGVAAGAETVPKGEHRPDEALKN 134 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 EL + + I+ L D R AI LRE++G SYEEIA IM+ +GTV SR+F AR+ + Sbjct: 135 RELGTRIQQAIDQLSPDHRTAILLREVEGFSYEEIAQIMESSMGTVMSRLFYARKKLQEL 194 Query: 185 VQP 187 ++ Sbjct: 195 LKD 197 >UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=3 Tax=Peptococcaceae RepID=A5D0C6_PELTS Length = 204 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 70/184 (38%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D++LVER Q GD +AF +LV RY++KV ++ R++ + D D+ QEAF++ Y+AL FR Sbjct: 5 DEILVERSQNGDLEAFEMLVRRYENKVYTVAYRFLGNHADASDLAQEAFLRLYQALPRFR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK-EISNPENLMLS 124 G+S+F TWLYRI N ++ L + R S E+ ++ I +PE+ + Sbjct: 65 GESSFMTWLYRITANACRDELRRRQRNSTVSLDGENGLEHIQNYSLFSGYIPSPEDTVEK 124 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +EL ++V + S+ + R+ + +RE+ G++Y+EI+A+M+C +GTV+SR+ RAR A K Sbjct: 125 KELNELVQMCLNSISGEHRLILVMREIQGMTYDEISAVMNCSLGTVKSRLSRARRAFREK 184 Query: 185 VQPL 188 L Sbjct: 185 FNGL 188 >UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW59_9BACT Length = 213 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 3/187 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D LV R Q GD AFN LV+RY+++ +++ V + D D+ Q+ F+KA+++++ F Sbjct: 24 DDLELVARSQAGDTSAFNELVIRYRNRAYAMIYNMVRNEQDAWDLAQDGFLKAWKSINRF 83 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN--PENLM 122 RG S+FYTWLYRI +N A + L + D I N G A S P + Sbjct: 84 RGQSSFYTWLYRILMNVAIDSLRKKQIEGGQEFDDQIGLHNIAPGAATAPKSEMEPAERI 143 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +E+RQ + I L + R AI +RE+DGL Y EIA M C +GTV SR+F AR+ + Sbjct: 144 SDKEIRQRIDEAIAKLSPEHRTAIVMREIDGLEYTEIAEQMGCSLGTVMSRLFYARKKLQ 203 Query: 183 NKVQPLI 189 ++ + Sbjct: 204 ALLKDVY 210 >UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67R63_SYMTH Length = 208 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 73/190 (38%), Positives = 115/190 (60%), Gaps = 3/190 (1%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS+ L D++LVER ++GD +AF L+ +++ V ++ R + D D+ QEAFI+AY Sbjct: 1 MSKSL-DELLVERAKRGDVEAFEQLISQHEKTVYNIAYRLTGNHEDASDLAQEAFIRAYS 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-P 118 +L FRGDS+F TWLYRI N + L + R+ + A+E E+ E + + ++ P Sbjct: 60 SLADFRGDSSFATWLYRIVNNVCLDELRRRKRQKVTYLDQAVEMEDGEVSRQIADTADGP 119 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E + EL++++ +I L E+ R+ + +REL G SY EIA +D +GTV+SR+ RAR Sbjct: 120 EQALERVELQRLIQESILQLDEEYRVVLVMRELQGYSYNEIAEALDLNLGTVKSRLNRAR 179 Query: 179 EAIDNKVQPL 188 A+ K L Sbjct: 180 SALKEKFMSL 189 >UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIR4_9FIRM Length = 209 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 3/172 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + ++ LV R Q+GD A++ L+ Y+ KV +L R + D D+ QEAF+KA+RAL Sbjct: 2 DIKEKELVARCQRGDLSAYDELMKCYEQKVYALCFRMSGNHTDAQDLAQEAFLKAFRALP 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVD-AIEAENFESGGALKE-ISNPEN 120 SF+G S F TWLYRI NT + Q RRP +D ++ ++ + L + +P + Sbjct: 62 SFKGQSQFSTWLYRIVTNTCLDERRRQARRPGLVSMDKPLDTDDGQIAVTLPDKGPDPLS 121 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 L+ EL+ + + LP R+ + +R+L+G SY+EIAA++D +GTV+S Sbjct: 122 EALNSELQAEIQELLSRLPAGQRIVVVMRDLEGYSYDEIAAVLDVNIGTVKS 173 >UniRef50_A9BNK1 RNA polymerase sigma factor n=12 Tax=Proteobacteria RepID=A9BNK1_DELAS Length = 223 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 96/195 (49%), Positives = 129/195 (66%), Gaps = 5/195 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 S +D LVER GD +AF LLV++YQ ++ L+ R V D VPD+ QE FI+AYRA Sbjct: 23 SSADSDLALVERTNAGDMRAFELLVIKYQRRIERLIGRMVRDVDLVPDIAQETFIRAYRA 82 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L FRGD+ FYTWLYRIAVNTAK L+ R P ++ ++ + + + E Sbjct: 83 LHQFRGDAQFYTWLYRIAVNTAKKALLDMKRSPLITESALHNGDDDDETSRVSQELTTEE 142 Query: 121 ----LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 ++ ++E+ Q V +E+LPEDLR A+TLRE++GLSYEEI+ M CP+GTVRSRIFR Sbjct: 143 TPETILAAQEIAQAVNAAMEALPEDLRQAVTLREIEGLSYEEISNAMGCPIGTVRSRIFR 202 Query: 177 AREAIDNKVQPLIRR 191 AREAI +V+PL+ R Sbjct: 203 AREAISARVKPLLER 217 >UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=Myxococcales RepID=A9FFY4_SORC5 Length = 292 Score = 212 bits (540), Expect = 7e-54, Method: Composition-based stats. Identities = 67/189 (35%), Positives = 105/189 (55%), Gaps = 6/189 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + + R+ D+ AFN LV+ Y+ +V +LV R + D DV QE F++ ++A+D FR Sbjct: 96 EAQFIARLVARDESAFNELVIMYERRVFALVYRMLGRRDEAEDVSQEVFVQVFKAIDQFR 155 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFES-----GGALKEISNPEN 120 G+S TW+YRIAVN KN RR + D G ++ ++S P+ Sbjct: 156 GESKLSTWIYRIAVNLCKNRTKYLSRRHAGAQDDVDAMAERVPLSAAKGVSVGDVSRPDE 215 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L+ +L +V R I L + R A+ LR+++ +SYEEIA++ P GTV+SRI RAR Sbjct: 216 LVEGMQLEAVVKRAIGQLDPEFREALILRDVEDMSYEEIASVTGLPDGTVKSRIHRARGQ 275 Query: 181 IDNKVQPLI 189 + V+ ++ Sbjct: 276 LRALVEKMM 284 >UniRef50_B1ZTI0 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Verrucomicrobia RepID=B1ZTI0_OPITP Length = 211 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 3/193 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 E +D +V +VQ G+ F+ LV +Y+ ++ ++ + D D+ Q+AFIKA+++ Sbjct: 19 HEADSDLAIVRQVQAGEVAQFDQLVTKYRARLYGVIYHLTSNREDAADLTQDAFIKAFQS 78 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRP--PSSDVDAIEAENFESGGALKEISNP 118 ++ F+G S+F+TWLYRIAVN+ +L Q R +D + E AL + + Sbjct: 79 INRFQGQSSFFTWLYRIAVNSTLTHLRKQRLRTFFSFEKIDEEDDVAKEVVAALTDATGA 138 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + EL++ + ++ L R ITL E+DGLS++EIA +MDC VGTVRSR+ A+ Sbjct: 139 DRETFAHELQEKLNEAMQKLSIKHRTVITLFEIDGLSHQEIAEVMDCSVGTVRSRLHYAK 198 Query: 179 EAIDNKVQPLIRR 191 + + +++Q IRR Sbjct: 199 QLLQSELQSYIRR 211 >UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IN25_9CLOT Length = 198 Score = 211 bits (538), Expect = 1e-53, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 1/184 (0%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E++ + L+++ + GD AF L Y KV S+ R + + D + QE FIKA++ + Sbjct: 2 EKINENNLLQKARNGDVGAFEELTTEYYSKVYSICYRMLNNTEDAYEQAQETFIKAFKYI 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F+G+ A TWLYRIA N +++ + S + + E PE + Sbjct: 62 KDFKGNCAISTWLYRIATNVCLDFIRKHKNKKVISIEQNTFEDLQLKDSLVSENPGPEKV 121 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + +Q + ++ + E R+ I LR+ GLSY+EI+ M PVGTV+SRI RAR + Sbjct: 122 AETNAQKQAIKEAMDKMNEKNRLVIILRDFMGLSYDEISDTMKVPVGTVKSRINRARNEL 181 Query: 182 DNKV 185 + Sbjct: 182 RELL 185 >UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU56_HALO1 Length = 216 Score = 210 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 6/193 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + ++ LV+R + GD +AF L RY +V +L V + D DVVQE FIKA+R L Sbjct: 16 DASDERELVDRARDGDTEAFRALYQRYHRRVYALAYGVVQNKEDAMDVVQEGFIKAHRYL 75 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----- 116 D F G+S+FYTWLYRI +N + +++ R DAI ++ + Sbjct: 76 DRFEGNSSFYTWLYRIVMNLSIDHIRKHKRVRHVDFNDAISHGQDDAASEDSLLPRVLGQ 135 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 NP ++ +E+R+ + + L + R + +REL+G+SYEE+A M+C GT+ SR+F Sbjct: 136 NPGKSLVRKEIREQISAALAKLSDKHRAVLVMRELEGMSYEEMAQAMECSKGTIMSRLFH 195 Query: 177 AREAIDNKVQPLI 189 AR + + + Sbjct: 196 ARRNMQQHLLEYM 208 >UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alkaliphilus RepID=A6TSU8_ALKMQ Length = 201 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 105/186 (56%), Gaps = 2/186 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 + L+E+ + GD ++F L++++Q K ++ R + + D DV QEA +KAYRA++ F+ Sbjct: 8 EATLIEKSKDGDSESFEKLILQHQKKAFNIAYRMLGNLEDANDVTQEALLKAYRAINRFQ 67 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-PENLMLS 124 S+F TWLY I NT +++ + E E + + + N PE L+ Sbjct: 68 EKSSFSTWLYTIVTNTCVDFIRKNRKTKVVYLDREYEGEEGQYKREVYDDENGPEELLEK 127 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E+++++ I L + R I LR+++G SY EIA I+DC GT++SRI RAR + N Sbjct: 128 KEVQRLIHDAINLLNYEQRKVIILRDIEGFSYREIAEILDCAEGTIKSRINRARSNLKNL 187 Query: 185 VQPLIR 190 + IR Sbjct: 188 ITEKIR 193 >UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHE6_MOOTA Length = 204 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D+ L+ R + GD +AF LLV RYQ + ++ R++ + D D QEA ++A++ L +F Sbjct: 3 SDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLAAF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG +F TWL I N ++ L RRP S + +E + ++++PE + L+ Sbjct: 63 RGQCSFKTWLQHIIANVCRDELRRLKRRPTLSLDNLLETGGGFRELSAGKVTSPEEVFLT 122 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E + R I++L + R+ + +R+L G SYEEIA+ + CPVGTV+SR+ RAR + Sbjct: 123 REGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASHLGCPVGTVKSRLSRARHFLRQH 182 Query: 185 V 185 + Sbjct: 183 L 183 >UniRef50_Q67KY4 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KY4_SYMTH Length = 198 Score = 209 bits (532), Expect = 6e-53, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 2/185 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 LTD+ LVER Q+GD+ A L+ RY+ + +L R + + D D QEA ++ L + Sbjct: 4 LTDEQLVERAQEGDRCALGELISRYEQRTYNLAYRLMGNHADACDAAQEALVRVCVRLHN 63 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE-AENFESGGALKEISNPENLM 122 FRGDS F TWLYR+ NT + L +GR +S +A+ E A+ + P Sbjct: 64 FRGDSQFSTWLYRVVTNTCLDELRRRGRTRCASLDEAMPLDEGSVPRQAVDDSDGPVEYA 123 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 E++ V R I LP D R+ + LR+L LSY+EIA ++ +GT++SR+ RAR+A+ Sbjct: 124 ERHEVQAAVQRAIGRLPYDYRVVVILRDLHNLSYQEIATVLGTTLGTIKSRLHRARQALR 183 Query: 183 NKVQP 187 ++ Sbjct: 184 CIIED 188 >UniRef50_B8I3Y9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I3Y9_CLOCE Length = 197 Score = 208 bits (531), Expect = 7e-53, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 1/179 (0%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + L+ + + GD AF L+V Y KV ++ R + + D + QE FIKA++ + F+G Sbjct: 6 ENLLHKARNGDAGAFEELMVVYYSKVYNICYRMLNNTEDAYEQAQETFIKAFKYIKDFKG 65 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 + A YTWLYRIA N +Y+ +R S + + + +I PE + Sbjct: 66 NCAIYTWLYRIATNVCLDYIRKNKKRKEVSIEQSTFEDLQLKDSLVSDIPGPEKIAEDNA 125 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +Q + + + E R+ I LR+ GLSY+EI+ I+ PVGTV+SRI RAR + + Sbjct: 126 RKQAIRTAMTKMNEKNRLVIILRDFMGLSYDEISEIIKIPVGTVKSRISRARNELRELL 184 >UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacterineae RepID=Q1CXJ7_MYXXD Length = 211 Score = 208 bits (530), Expect = 9e-53, Method: Composition-based stats. Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 5/189 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D LV+RV+ GDQ+AF LLV RYQ KV ++ + + DV QEAF+K Y+ LD F Sbjct: 11 DDLTLVKRVRTGDQRAFKLLVERYQRKVYAVALGMLKDKEEAMDVSQEAFVKVYKYLDHF 70 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----NPEN 120 +GDS+FYTWLYRI VN + + +G + D ++ + S NP+ Sbjct: 71 KGDSSFYTWLYRITVNICIDVIRKRGGGGEVVEFDESQSVDLSEARIGALGSRLGTNPQK 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L EL + + + ++PE R + LRE++G+SY+++A +D P GTV SR+F AR Sbjct: 131 SALRRELAEKIQEALATVPEKHRAILLLREIEGMSYDDLARTLDIPKGTVMSRLFHARAK 190 Query: 181 IDNKVQPLI 189 + + + Sbjct: 191 VQKILSEYL 199 >UniRef50_UPI00016939CD RNA polymerase ECF-type sigma factor n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939CD Length = 202 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 102/183 (55%), Gaps = 5/183 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 EQLTD+ VE++++G +A+ LV R+++ V +L+ R V + D+ QE F+KAYR+L Sbjct: 2 EQLTDEEWVEQIRQGHAEAYRYLVERHKNYVYTLIYRMVGHRETAEDLSQEVFLKAYRSL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 +RG++ F TWLYR+ N +YL + RRP D ++ +L PE Sbjct: 62 AQYRGEAKFTTWLYRLTTNLVTDYLRERKRRPMEVWADKVKN----WFASLDPDKGPEEQ 117 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++ E R + + LPE R+ ++L SY+EI+ I+ PV TV +R++R + + Sbjct: 118 VILNEQRDALHEALLKLPEKYRIVLSLYHFQQFSYQEISDILQVPVKTVETRLYRGKSML 177 Query: 182 DNK 184 K Sbjct: 178 KQK 180 >UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacillales RepID=SIGW_BACSU Length = 187 Score = 205 bits (524), Expect = 4e-52, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 +++V+KGDQ AF +V Y+ K+ L R + + + D+ QEAFI+AY +DSF + Sbjct: 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRK 68 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F TWLYRIA N + + + A + + PE+ ++S EL Sbjct: 69 FSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSN 128 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 + + I LP+ R I L+ +D LS EI I++ PVGTV++RI R REA+ +++ L Sbjct: 129 TIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL 187 >UniRef50_Q0AVE0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVE0_SYNWW Length = 193 Score = 205 bits (523), Expect = 6e-52, Method: Composition-based stats. Identities = 66/183 (36%), Positives = 112/183 (61%), Gaps = 4/183 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 ++Q LV++ +GD +AF LV++YQ+KV +L RY+ + D D+ QE F+KA+R+L +F Sbjct: 3 SEQELVKKSMEGDTQAFEKLVLQYQNKVYALSFRYMGNEDDAYDMSQEVFLKAFRSLKTF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRR--PPSSDVDAIEAENFESGGALKEISNP-ENL 121 +G+S+F TW++RI N + L + RR P S D A+ + E + + S P + + Sbjct: 63 KGNSSFGTWIFRITTNVCLDELRRRKRRIVPLSLDEAAVTSRGSEVEREIVDPSPPVDRV 122 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +EL Q + ++ + + + I LR+ LSYE+IA +++C VGTV+SR+ RAR + Sbjct: 123 YEQKELSQYIQGLLDQMKPEHKAVIILRDSMDLSYEQIAYVLNCSVGTVKSRLSRARSIL 182 Query: 182 DNK 184 + Sbjct: 183 RKQ 185 >UniRef50_A4GHT6 RNA polymerase sigma-70 factor n=1 Tax=uncultured marine bacterium EB0_39H12 RepID=A4GHT6_9BACT Length = 211 Score = 205 bits (523), Expect = 6e-52, Method: Composition-based stats. Identities = 80/190 (42%), Positives = 127/190 (66%), Gaps = 3/190 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S + D LV RV+ GD +AF+LLV++YQ ++ S ++ D+VQ++FIKA+++ Sbjct: 13 SNKDIDLALVRRVKAGDYRAFDLLVIKYQSRLVSTALKFSKDLQIAEDIVQDSFIKAFKS 72 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 ++SFR DSAFYTW+YRI VNTAKN+LV++ R+ D + + E E P+ Sbjct: 73 INSFREDSAFYTWVYRITVNTAKNFLVSKKRKGELLATDISDDGSLEIDSL--ETDTPDG 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ + EL++I+ ++ L E+ + A+TLRE +GLSYE+I+ I++CPVGTVRSRIFR RE Sbjct: 131 ILKANELKEILLDSLNRLGEETKTALTLREFEGLSYEQISKIVNCPVGTVRSRIFRGREV 190 Query: 181 IDNKVQPLIR 190 ++ ++ + Sbjct: 191 LEETIKKYKQ 200 >UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESI6_SORC5 Length = 266 Score = 205 bits (522), Expect = 8e-52, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 2/180 (1%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 L+ER QKGDQ AF LV R+Q + ++ V D ++VQ+AF++ Y+ L SF+G S Sbjct: 69 LIERAQKGDQAAFRSLVERHQRRAFAIAMGLVRDENDARELVQDAFLRVYKGLGSFQGGS 128 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRR-PPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 +F+TWLYRI N A + + GRR + A + ++ A + ++P N++ E+ Sbjct: 129 SFFTWLYRIVTNLAIDLMRKPGRRDLELQENQAADEQSDFPLVARIDGADPLNVVRRREI 188 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 + +++LP R I +RE++G+SYEE+A M GT+ SR+F AR+ + + Sbjct: 189 AGRIQAALDALPPYHRGVILMREVEGMSYEEMAQAMGVSKGTIMSRLFHARQKLQRALAD 248 >UniRef50_B5YDF0 RNA polymerase sigma-E factor n=2 Tax=Dictyoglomus RepID=B5YDF0_DICT6 Length = 223 Score = 204 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 110/177 (62%), Gaps = 1/177 (0%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + +DQ L+ ++ GD++AFN+LV RY+ KV +++ + + D+ D+ QE FIK ++ L Sbjct: 31 NKFSDQSLISLIKNGDKEAFNILVKRYEKKVLNILYLQLGNIPDLEDLAQEVFIKVFKNL 90 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + FRG++ F TW+YRI +N A +Y + + E+ + +P ++ Sbjct: 91 NRFRGEAKFSTWIYRITINVAHDYKRKFKESYSLDEPIGEDEEDTFEKVISSDEEDPLSI 150 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + E++++ + + I+ LP++ + + LRE +GLSYEEI+ I+ CP+GTV SR++RAR Sbjct: 151 VEKEDIKKKLHKLIKELPKEYQEVLILREYEGLSYEEISEILRCPIGTVESRLYRAR 207 >UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD34_THET1 Length = 189 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 3/183 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D LV R Q+GD AFN LV RYQ ++ +L RY+ DV QEAF+ A++AL SF Sbjct: 5 NDDELVRRAQEGDLDAFNKLVERYQVQMYNLAIRYIGDPFLAEDVTQEAFVAAWKALGSF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG S F +WL+RI +N A + +R P S +D I E E PE +S Sbjct: 65 RGGS-FRSWLFRILINEAHDLRRRHVKRTPGS-LDQILEELGEFPQMGDPHIGPEETAVS 122 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 + + + I+ LPE+ ++ + L ++ GLSY+E+A + P+GTV+SR+FR R + Sbjct: 123 AATFKAIEKCIQKLPEEYKLVLLLVDVQGLSYDEVATALRLPLGTVKSRLFRGRCMLREL 182 Query: 185 VQP 187 ++ Sbjct: 183 LKD 185 >UniRef50_B3DXV9 DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXV9_METI4 Length = 204 Score = 202 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSR-YVPSGDVPDVVQEAFIKAYRALDSF 64 TDQ L+ R++ G+ +AF++LV RYQ ++ ++ + D DV+ E F+KAY+ + F Sbjct: 14 TDQELILRMKSGELEAFDILVERYQKRLYRVIYGVLLHHEDTNDVLMETFLKAYKNIGGF 73 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGR--RPPSSDVDAIEAENFESGGALKEISNPENLM 122 R ++FYTW+YRIAVNTA ++ +P D E + + + + Sbjct: 74 RIGASFYTWIYRIAVNTAISFKRKSKFTPQPFPHFSDEEEGQVEKEFVDYRSGEQAVKQI 133 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +EL +I+ + L E R + L +L+ LS+ EIA IM C GT+RSR+F A + + Sbjct: 134 EMKELGKILNEALSKLSEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIRSRLFYAHKQLQ 193 Query: 183 NKVQ 186 ++ Sbjct: 194 KILK 197 >UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514 RepID=B9XPW8_9BACT Length = 205 Score = 202 bits (514), Expect = 7e-51, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 5/189 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D L+ RV++GD AF LV +Y+ V ++V R + + D+ Q FI+ Y++ + Sbjct: 8 DVALMLRVKRGDSDAFAELVEKYKQPVINVVFRILRDATEAEDLAQNVFIQVYKSAHRYE 67 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK----EISNPENL 121 + F TWL+ IA N N + + R P S + E + + ++ + + Sbjct: 68 VSAKFSTWLFTIARNLCLNEIRRRSRHPADSLEANFTNSDNEDLPSRQFEDVKVYSAPDT 127 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +L EL V + ++ LPE+ R AI L + +SYEEIA ++ C + +S I R RE + Sbjct: 128 LLQHELEHEVEQALKELPENQRTAILLCRQEDMSYEEIAKVIGCSLSATKSLIHRGRETL 187 Query: 182 DNKVQPLIR 190 K++P ++ Sbjct: 188 KQKLKPYLQ 196 >UniRef50_Q1INR3 Sigma-24, ECF subfamily n=3 Tax=cellular organisms RepID=Q1INR3_ACIBL Length = 202 Score = 200 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 107/187 (57%), Gaps = 4/187 (2%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 +S +T+ +ER + GD ++F L ++ +V SL R + + D+ QEAF++ +R Sbjct: 8 LSTGITEAEAIERAKNGDPESFEALYGLHKRRVYSLCLRMTGNTAEAEDLTQEAFLQLFR 67 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + +FRG+SAF TWL+R+AVN +L +G P S +++E + + G K+I + Sbjct: 68 KIATFRGESAFSTWLHRLAVNVVLMHLRKKG-LPEVSLEESMEPQQED--GPKKDIGARD 124 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 N++ R + R IESLP R+ L +++G + EIA +M C +G +S++ +AR Sbjct: 125 NVLAGSIDRVNLGRAIESLPPGYRIIFVLHDVEGYEHNEIAEMMGCSIGNSKSQLHKARM 184 Query: 180 AIDNKVQ 186 + + ++ Sbjct: 185 KLRDLLR 191 >UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RAI8_AMMDK Length = 215 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 4/184 (2%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 L+E+ + G +AF LV+ YQ +V L R + D D+ QE F++AYR L SFR ++ Sbjct: 7 LLEQARAGSHQAFEELVLAYQDRVYGLCYRLTGNHDDAEDLAQEVFVRAYRGLRSFRAEA 66 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN--PENLMLSEE 126 F T+L+RIAVN N+ + S D + + E + + ++ PE E Sbjct: 67 DFGTYLHRIAVNLFLNH-RRKANHNTLSLDDPVSVPDGELPRQVADGNHLHPEEEAEKRE 125 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++V R + SL + R + LRE++ +SYEEIAA++ GTV+SR+ RAR A+ + Sbjct: 126 FIRLVRRALNSLSREHRAVLVLREMEEMSYEEIAAVLGVAPGTVKSRLNRARAALQKALI 185 Query: 187 PLIR 190 + R Sbjct: 186 KMAR 189 >UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNI5_AKKM8 Length = 199 Score = 200 bits (509), Expect = 2e-50, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 4/190 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 L D LV R ++GD +AF+ LV+R+ K+ + + + + D D+ QEAF KAYRAL Sbjct: 9 TLEDTELVARAREGDSRAFDELVIRHSRKLHATLYQMTDNYDDAYDIAQEAFSKAYRALR 68 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESG---GALKEISNPE 119 F G SAFYTWL+ IAVN A+N+L + RR S D ++ E + ++PE Sbjct: 69 YFNGQSAFYTWLHSIAVNHARNFLKKRNRRMTYSLDDDEYGDHTEKDMNMADETDGADPE 128 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 EL+ + ++ L R + L ++ GL++ EI+A++ GT+RSR+ A + Sbjct: 129 RRTHLNELQLKINEALKKLSTKHREVVVLHDVKGLNHTEISALLGISEGTLRSRLHYAHK 188 Query: 180 AIDNKVQPLI 189 + + + Sbjct: 189 ELQGLLAEYL 198 >UniRef50_A4A074 RNA polymerase sigma factor, sigma-70 family protein n=3 Tax=Bacteria RepID=A4A074_9PLAN Length = 204 Score = 199 bits (508), Expect = 3e-50, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 4/190 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDS 63 +T+ LV+ +Q GD AF LV Y ++ ++ R++ D D +Q+AF+ A+R++ Sbjct: 13 VTEAELVQGLQSGDPAAFERLVRDYSGRLLAVARRFLTQEQDAQDALQDAFLSAFRSISR 72 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN---FESGGALKEISNPEN 120 F G+S TWL+RI VN + L + R+P D + + G + Sbjct: 73 FEGNSQLSTWLHRIVVNASLMKLRTRRRKPEKPIDDLLPQFSGNGHRDGHEPAWAVTIDT 132 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + E+R++V I LPE R + LR+++ +S EE A +++ G V++R+ RAR+A Sbjct: 133 AVNDREIRELVRTKIAELPESYRTVLLLRDIEQMSTEETAEVLELTPGAVKTRLHRARQA 192 Query: 181 IDNKVQPLIR 190 + + P ++ Sbjct: 193 LKTLLDPHMQ 202 >UniRef50_B4D0E9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0E9_9BACT Length = 195 Score = 199 bits (507), Expect = 4e-50, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 5/193 (2%) Query: 1 MSEQLT---DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIK 56 M + L+ D L+ R Q G+ AF+ LVV+Y ++ LV + D D++Q+ + K Sbjct: 1 MQDDLSRKQDDELIARTQAGEAAAFDELVVKYSPRLYGLVYNMTSNHEDTNDLMQDIWSK 60 Query: 57 AYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESG-GALKEI 115 AYR++ FRG S+FYTW++ I VN N+L +GRR S D + L Sbjct: 61 AYRSIAGFRGKSSFYTWIHSIGVNMTINFLKKRGRRYTLSLDDIDSNVQHDKEFIELTAT 120 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 S P EL++ + ++ L D R +T+ ++ G+ + EIA I+ GTVRSR+F Sbjct: 121 STPVREADLSELQKRLNEAMQKLSHDHRAVVTMFDIQGMPHAEIAKILGISEGTVRSRLF 180 Query: 176 RAREAIDNKVQPL 188 A + N + Sbjct: 181 YAHRQLQNFLTEF 193 >UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8Z5_9BACT Length = 238 Score = 199 bits (506), Expect = 5e-50, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 6/185 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D++LV+R + GD AF+ +V RY ++ ++V + + + D +V Q+AFI+A+R L +FR Sbjct: 49 DRMLVDRFKDGDASAFDEMVSRYWDRIYAVVHQLLRNHQDAEEVTQDAFIRAHRGLVNFR 108 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-----SNPEN 120 GDSAF TWLY+IA N A+N RR V + + ++ L EI +P++ Sbjct: 109 GDSAFSTWLYQIATNLARNRYWYWWRRKRDKTVSFDQPVSSDNETPLSEIYAAPVESPDD 168 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +++E V +E L R + LR + LSYEEI I+ VGTV+SRI RAR+ Sbjct: 169 ITVTQEFVDRVASGMEKLNAKHREILILRNVKNLSYEEIGTILGISVGTVKSRIARARDN 228 Query: 181 IDNKV 185 + + Sbjct: 229 LRATM 233 >UniRef50_B7R6J3 RNA polymerase sigma factor, sigma-70 family n=5 Tax=Thermoanaerobacterales RepID=B7R6J3_9THEO Length = 191 Score = 198 bits (505), Expect = 7e-50, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 117/182 (64%), Gaps = 7/182 (3%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + L+ER + GD +AF+LL+ Y+ V +++ R V + D+ QE FIKAY ++ +FR Sbjct: 4 EELLERARNGDDEAFSLLIENYEKYVYNVILRIVEEKEEAKDIAQETFIKAYMSIKTFRK 63 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 DS+F TW+YRIAVNTA +YL + R S+V+ + A E +K PE ++ + Sbjct: 64 DSSFRTWIYRIAVNTAMDYLRKKVR----SEVNLVTAA--EDELEIKSFQTPEEVIEQKL 117 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++V R I LP D ++A+ LR+++G++YEEIA+I+ +GTV+SRI+RAR + +++ Sbjct: 118 TVEMVRREISKLPVDYKIALILRDIEGMNYEEIASILKVNLGTVKSRIWRARNLLRERIK 177 Query: 187 PL 188 L Sbjct: 178 SL 179 >UniRef50_A6NW06 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW06_9BACE Length = 198 Score = 198 bits (504), Expect = 9e-50, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 2/182 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 ++ LV R ++GDQ+AF LV Q ++ +L R S D D+ QEAF+ A+R LD F Sbjct: 3 NERELVARAKRGDQEAFGALVEANQGRIYNLTLRMTGSPEDALDLSQEAFLNAWRGLDKF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-SNPENLML 123 +GDS+F TWLYR+A N ++L + RR S +++ E E L + +PE + Sbjct: 63 QGDSSFSTWLYRLASNVCIDFLRREKRRKDISMTVSLDDEEEERQAELPDHRHSPEREVE 122 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ELR+ + R + SL E+ R + +REL G+SY EI A++ GTV+SRI RAR A+ Sbjct: 123 RRELREDIRRGLMSLSEEHRQVLVMRELSGMSYAEIGAVLRLEEGTVKSRIARARVALRK 182 Query: 184 KV 185 + Sbjct: 183 IL 184 >UniRef50_B9XG21 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XG21_9BACT Length = 200 Score = 197 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 1/184 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +D+ LV +KG+ AF LV R++ K+ + + + + D+ QEA++K+++ L F Sbjct: 11 SDEQLVRAAKKGEMAAFEELVARHRDKIYARAFSMMRNEEEAVDLCQEAWVKSWQRLQQF 70 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 +GDS+F TW+ RI +N + L + R+ S + E NP + Sbjct: 71 QGDSSFGTWMTRIVINLCLDQLRKRKRQRTESIEEMSEESGGVERQMPTVTINPTERLER 130 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ELR+ + + + L + R + L E + + Y+EIA M C +GTV SR+F AR + Sbjct: 131 AELRKRIDQALSQLSHEHRTVLVLHEFEEMEYKEIAKTMGCSIGTVMSRLFYARRKMAVL 190 Query: 185 VQPL 188 + L Sbjct: 191 LANL 194 >UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ1_DESAH Length = 190 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 64/182 (35%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + D L++R Q+GD AF LV +Y+H+V ++ R++ D DV Q+ F+ Y++L S Sbjct: 1 MKDNDLLQRFQRGDADAFTQLVDQYKHRVTNICYRFLSDREDARDVTQDVFMAVYKSLGS 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 FR ++ TW+YRIAV + N++ + R+ V + E+G ++ PE + Sbjct: 61 FRQEAKLSTWVYRIAVTRSLNFVKKRKRKARFEQVRDMLTFKEEAGLESASVTTPEKELE 120 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +E Q++ + ++SLP++ ++A TL + DG+ Y EIAAIMD + +V S IFRAR+ + Sbjct: 121 QQEEFQVLQQALDSLPKNQKIAFTLSQYDGVKYAEIAAIMDTTISSVESLIFRARKNLQK 180 Query: 184 KV 185 K+ Sbjct: 181 KL 182 >UniRef50_A6GDP6 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDP6_9DELT Length = 239 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDS 68 LV R+++GD++AF LV YQ ++ LV R + + + D+ QE FI YR + ++RG+ Sbjct: 50 LVRRLKQGDERAFQELVHTYQDRIFGLVYRMIGNRQEAEDIAQEVFISVYRGIANYRGEG 109 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRR--PPSSDVDAIEA------ENFESGGALKEISNPEN 120 FYTWLYRIA NT KN L R + D+D A + + PE Sbjct: 110 RFYTWLYRIASNTTKNRLKYLKGRNFHRADDIDESPAAHTKGKDGGPVVALQSVVHGPEA 169 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + L Q + R I +L + R+ I LR++ G +Y EI AI GT++SR+ RAR A Sbjct: 170 TVQGNRLEQAIQREIANLEPEHRLLIVLRDIQGHTYAEILAITGLQQGTLKSRLHRARLA 229 Query: 181 IDNKVQPLI 189 + +++P + Sbjct: 230 LKVRLEPYL 238 >UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured marine microorganism HF4000_APKG8C21 RepID=B3TA07_9ZZZZ Length = 211 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 72/185 (38%), Positives = 97/185 (52%), Gaps = 5/185 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 S D L+ R Q GDQ AFNL+V RYQ V +L +R + D+ QE FI AYRA Sbjct: 16 SMHQDDAELIGRTQGGDQAAFNLIVERYQSNVYNLSARILGDRTAAEDITQETFISAYRA 75 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + FRG S WL RIA N + +++ A RRP S ++ F +PE Sbjct: 76 ISRFRGGS-LRAWLLRIASNHSYDWIRASRRRPQVSLDQSLLNPGFSPPST---GPSPEQ 131 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L ELR + R I +LP D R + L ++ G+SYEE A +GTV+SR+ RAR Sbjct: 132 EALRSELRVELQRAILTLPPDQRTTLVLIDVQGMSYEETAEATRASIGTVKSRMSRARSR 191 Query: 181 IDNKV 185 + N + Sbjct: 192 VRNHL 196 >UniRef50_Q01QB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QB2_SOLUE Length = 205 Score = 196 bits (500), Expect = 3e-49, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + TD V R + GD AF +LV R+ + L R + D DVVQE+F++AY+ L Sbjct: 16 ECTDLEYVTRARAGDTDAFRVLVERHSRALFRLAFRMTGNQQDGEDVVQESFLRAYKQLA 75 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F ++F TWLYRIAVN + + + ++ RR + E E+ K+ P+ + Sbjct: 76 KFDERASFGTWLYRIAVNCSLDLVRSRKRRNEHMAPEDSEMEDPVLLLPSKD-PTPDRMA 134 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +S ++R+ V + L R A LR +G+ E+++ ++ C G + +FRA + + Sbjct: 135 MSGQVRERVADAMNELSASERTAFVLRHFEGMCIEDVSRVLGCQPGAAKHSVFRAVQKLR 194 Query: 183 NKVQPLI 189 ++P + Sbjct: 195 RALEPHM 201 >UniRef50_A5V1V8 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Chloroflexi (class) RepID=A5V1V8_ROSS1 Length = 224 Score = 196 bits (499), Expect = 4e-49, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 3/183 (1%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 L+ R Q GD +A LV+ Q + S+ + + D D+ QEAFI+ +RAL + G Sbjct: 6 AELIRRAQAGDPEALTHLVLSQQQYIYSIAMSVLKNPDDAADLTQEAFIRLFRALPQYNG 65 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI--SNPENLMLS 124 +S F TWLYR+ VN ++ L +GR+ P V + + G + S+PE + S Sbjct: 66 ESRFTTWLYRLVVNLGRDELRRRGRQAPLVSVPESDEDFDAIGTIADDDRWSDPEVALDS 125 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +ELRQ V R ++ L E R+ +TL + + Y +IA I+D P+ TV+S I R +E + Sbjct: 126 QELRQEVRRALDQLEEHYRLVLTLYYFEDMKYTDIAEILDLPLNTVKSHIRRGKERLAAI 185 Query: 185 VQP 187 +Q Sbjct: 186 LQE 188 >UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RFZ5_MOOTA Length = 200 Score = 195 bits (497), Expect = 6e-49, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 2/166 (1%) Query: 22 FNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 F LVV YQ KV +L + + D D+ QE F++AY+ LD FR ++ TWL+RI VN Sbjct: 18 FEELVVNYQDKVYNLSYQLTGNHADAQDLAQEVFVRAYQGLDKFRNEADPGTWLHRITVN 77 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLMLSEELRQIVFRTIESLP 139 N R P S + E + +P +L+ EL+ V + LP Sbjct: 78 LYLNLRRKITRHPVVSLDAPLSTAEGEVTREVAAAGGDPVDLVEEMELKGFVRSALNQLP 137 Query: 140 EDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + R A+ LREL G SYEEIA+I+ C +GTV+SR+ RAR+A+ KV Sbjct: 138 PEYRTALVLRELQGYSYEEIASILGCSLGTVKSRLNRARQAMKEKV 183 >UniRef50_B5VYK7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Arthrospira RepID=B5VYK7_SPIMA Length = 263 Score = 195 bits (497), Expect = 7e-49, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 6/193 (3%) Query: 3 EQLTDQVLVERVQKG---DQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAY 58 E+L++ LV R Q+G D+ AF L+ RYQ V ++ P D D+ QE +I+ Y Sbjct: 69 EKLSNYDLVLRCQEGLQPDRLAFTELLRRYQSHVDKILFHLAPDWQDRADLAQEIWIRVY 128 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE--AENFESGGALKEIS 116 R + + + F WL RIA N + L + R P+ +DA + + Sbjct: 129 RNIKRLQEPAKFQGWLSRIATNLFYDELRKRKRVRPALSLDAPRTVDDGEMEWELPADRP 188 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 P+ + + E + I LPE R I LRE+ GL+YEEIA I +GTV+SRI R Sbjct: 189 GPDEDLATREFYDHLQEAIADLPEVFRTTIVLREIQGLAYEEIAEITGVSLGTVKSRIAR 248 Query: 177 AREAIDNKVQPLI 189 AR+ + +++QP + Sbjct: 249 ARQRLQSQLQPYL 261 >UniRef50_Q1D378 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D378_MYXXD Length = 208 Score = 195 bits (496), Expect = 8e-49, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 92/183 (50%), Gaps = 2/183 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D L+ R+++G+ AF LLV +Q ++ R V + D+VQE F+ ++ + FR Sbjct: 25 DAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMVGDREEAHDLVQEIFVSVHQNVRRFR 84 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 DS TWL+RI N N L RR EA S G P+ + S Sbjct: 85 EDSKLSTWLFRITRNHCINRLKYLKRRGRGRSEVFDEAAALLSEGG-GTAPGPDAALESA 143 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 R V I L D RM + LR+++GLSY+EI I + P GTV+SR+ RARE + + + Sbjct: 144 RERARVQWAISQLEPDARMLVALRDIEGLSYDEIIDITELPEGTVKSRLHRAREKLADLL 203 Query: 186 QPL 188 L Sbjct: 204 GRL 206 >UniRef50_C1AEN0 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEN0_GEMAT Length = 196 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 3/190 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 L D +V G+++AF LV RYQ ++ + V R + D D+VQE FI+ YR + Sbjct: 7 TLEDGDVVSSFLAGEERAFEELVDRYQGRLLNFVYRTIGDRDRAEDLVQEVFIRVYRHIA 66 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPP--SSDVDAIEAENFESGGALKEISNPEN 120 F F TW+Y IA N AKN L + R P + A + + P++ Sbjct: 67 RFDRSKKFSTWIYTIASNLAKNELRNRSRNPLVLFQTIKAKFEDEDRPLQFEDVHTRPDD 126 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L LR++V +++ LP R LREL+G SYEEIA I +GTV+SR+ RAR A Sbjct: 127 LFRKRHLREMVEQSVGKLPAHHREVFVLRELEGKSYEEIAEITGVNLGTVKSRLNRARTA 186 Query: 181 IDNKVQPLIR 190 + P++R Sbjct: 187 FAEIIAPMVR 196 >UniRef50_B1I6K2 RNA polymerase sigma factor n=5 Tax=Clostridiales RepID=B1I6K2_DESAP Length = 205 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 72/189 (38%), Positives = 104/189 (55%), Gaps = 5/189 (2%) Query: 5 LTD-QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + D + LV R Q GD AF LV YQ K+ +L + D D+ QEAF+KAY AL Sbjct: 1 MDDVKTLVRRSQAGDTAAFEELVRLYQDKIYALACHLAGNQADAEDLAQEAFVKAYYALK 60 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENL 121 FR ++ F TWL+RI VN N + RP S + ++ + E L S P+ Sbjct: 61 GFRNEADFGTWLHRITVNQWINL--KRRERPTLSLDEPVQTGDGEVQRELAAASAEPQEA 118 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + +E ++ V R + + + R+ + LRE+ SYEEIA ++DC +GTV+SRI RAR A+ Sbjct: 119 LERKEFQRFVRRALGEISREHRVVLVLREMHDYSYEEIARVLDCSLGTVKSRISRARTAL 178 Query: 182 DNKVQPLIR 190 +V L R Sbjct: 179 KERVGALAR 187 >UniRef50_C5CIP4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP4_KOSOT Length = 186 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 108/184 (58%), Gaps = 4/184 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 + ++ L+E ++K + A+ +L +Y ++ S++ Y+ + DV DV+QE FIK ++ + F Sbjct: 1 MDEKKLIEGLKKKEMWAYEVLYDKYAPRLGSVIRSYLGTDDVDDVLQETFIKVFKNIKKF 60 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGR-RPPSSDVDAIEAENFESGGALKEISNPENLML 123 RG++ TWLYR+A+N + + + R R +D + + F A ++ ++ Sbjct: 61 RGEAKLSTWLYRVAINVCNDIIAKRKRNREYLTDFQENDEKPFLEPPAPNDVF---REVM 117 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +E + + I LPE+ R+ I LR+++GLSYEEIA I+ P GT++SR+ AR+ + + Sbjct: 118 NELSYEELTNIIAKLPEEDRLLIKLRDIEGLSYEEIAQILGKPNGTIKSRLHYARKRLRH 177 Query: 184 KVQP 187 ++ Sbjct: 178 LLEE 181 >UniRef50_Q2RYX7 Extracytoplasmic function alternative sigma factor n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYX7_SALRD Length = 192 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 1/186 (0%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 ++D+ L+ + Q G +AFN+LV RY ++ + R++ D++QE F++ +R S Sbjct: 1 MSDEDLMSQFQAGTVEAFNILVERYSDRLMQYLYRFLGDKKRCEDLLQETFLRVHRNRHS 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 +R + F TWLY IA N A++ + RR S E +P+ Sbjct: 61 YRRIAKFSTWLYTIAGNLARSEYRKRKRRRMQSIQSVNRDNEEYEMEIPDESFSPDKHAE 120 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 S + + +P R + LR++ L+Y+EIA I P+GTV+SRI R R + Sbjct: 121 STIQDHYIQEAMNEIPPAFREVVVLRDIQQLAYDEIAEITGLPMGTVKSRINRGRTKLQA 180 Query: 184 KVQPLI 189 +Q + Sbjct: 181 LLQDVY 186 >UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C377D Length = 245 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 101/188 (53%), Gaps = 6/188 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 MS+ D+ L+ G + AF LV RYQ ++ + R V S D DVVQ+AF+ AY+ Sbjct: 1 MSD--DDRRLIAECLGGQRDAFGTLVSRYQTRLYNSALRLVNSPEDAADVVQDAFLSAYQ 58 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL SF+GD+ F+TWLYRIA N A + + RRP S + + + E P Sbjct: 59 ALSSFKGDAEFFTWLYRIAFNIAVSL--KRKRRPSVSLENYSQQTGLDPDD-PSEYVKPS 115 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + E + + I L + R + L+++DGL YE+IA + P+GT+RSR+ RAR Sbjct: 116 AALERTEDERQLHGAIARLSSEHREVLLLKDIDGLKYEDIAEALGVPIGTIRSRLHRARL 175 Query: 180 AIDNKVQP 187 + + + Sbjct: 176 ELRDLLAA 183 >UniRef50_A6C5N0 RNA polymerase sigma factor RpoE n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C5N0_9PLAN Length = 207 Score = 193 bits (491), Expect = 3e-48, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 3/186 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 DQ L++ G +AF+ LV++YQ ++ + R + S D D QE F +A+ L +F Sbjct: 4 NDQYLIQECLAGRTEAFDQLVLKYQDRLFRTLVRVLGSSDDARDAAQEGFTQAFFKLKTF 63 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG +AFY+WL+RI+ N A R S+ +D E ++P + Sbjct: 64 RGTAAFYSWLFRISFNAAITQKRKTKR--TSATIDPQENPAGTWLVDTNPANHPPEVAEL 121 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +++V + + L E+ R + LREL+G+SY EIA I + P+GTVRSRIFR R + K Sbjct: 122 AERKKLVHQALNELQEEYRTPLILRELEGMSYGEIAEITEIPLGTVRSRIFRGRNELKQK 181 Query: 185 VQPLIR 190 + L + Sbjct: 182 LNTLFQ 187 >UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobacteria RepID=P73431_SYNY3 Length = 223 Score = 193 bits (491), Expect = 3e-48, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 6/193 (3%) Query: 3 EQLTDQVLVERVQKG---DQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAY 58 E LT+ L+ Q+ D AFN L+ RYQ V ++ P D D+ QE +I+ Y Sbjct: 29 ESLTNVDLILLCQQKTRPDSTAFNELLRRYQSHVDKILYHLAPDWQDRADLAQEVWIRVY 88 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE--AENFESGGALKEIS 116 R + F WL RIA N + L + R +DA + + Sbjct: 89 RNIHRLNEPVKFKGWLSRIATNLFYDELRKRKRVSHPISLDAPRRMDDGEIDWDIESDYP 148 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +P+ + + E + + I+ LPE R I LRE+DGL+YEEIA I +GTV+SRI R Sbjct: 149 SPDETLSTAEFYECLRSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIAR 208 Query: 177 AREAIDNKVQPLI 189 AR + +QP + Sbjct: 209 ARAKLQTFLQPYL 221 >UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QYW7_CHLT3 Length = 317 Score = 192 bits (490), Expect = 4e-48, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 108/192 (56%), Gaps = 5/192 (2%) Query: 4 QLTDQVLVERVQKGDQ----KAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAY 58 +L D L++++ GD +A+ L+ +Y+ ++ +L+ + + + +V D+VQE F KA+ Sbjct: 124 RLEDYALIDQICDGDPHKRDQAYKRLLNKYRGQIFNLILKIIHNQNEVEDLVQETFSKAF 183 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118 ++++F + AF TWLYRIA N++ +YL + + S D ++ + P Sbjct: 184 NSIENFNKEYAFSTWLYRIATNSSIDYLRKRRLKTYSLDNPITTKDDEYTIEIPDSSEEP 243 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 ++ + +V I++LP R I +R L +YEEIAA +D P+GTV++ IFRAR Sbjct: 244 GKNIMQSQRDALVRSAIKNLPPKYRKVIEMRHLQERTYEEIAADLDIPLGTVKAHIFRAR 303 Query: 179 EAIDNKVQPLIR 190 E + ++ +R Sbjct: 304 EMLYKMLRDKLR 315 >UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T27_SYMTH Length = 208 Score = 192 bits (490), Expect = 4e-48, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 4/187 (2%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS + D+ L Q+GD AF LV R++ +V + + V D D+ QE F+K +R Sbjct: 1 MSPR--DETLAFAAQQGDMDAFAALVERHKGRVYRTLYQVVGDAADAQDLAQEVFVKVFR 58 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NP 118 L S+RGD+AF TWL+R+ +N A ++L A+ RRP + ++ E L P Sbjct: 59 NLGSYRGDAAFTTWLHRVTLNVAFDWLRARKRRPLTVPLEPPPGEEEHRQADLPSPEAGP 118 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E L L EE R+ + I+ L D + + L LSY++IA + PV TV +R++RAR Sbjct: 119 EELTLREERRRRLRDAIDRLSPDYKEVVLLYHFYHLSYQQIADRLGVPVRTVETRLYRAR 178 Query: 179 EAIDNKV 185 + + Sbjct: 179 ANLKRML 185 >UniRef50_A0LHW6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHW6_SYNFM Length = 202 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 64/188 (34%), Positives = 109/188 (57%), Gaps = 5/188 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D V +GD+ AF+ LV+R++ +V +L R + + + QE F++ +R++ FR Sbjct: 15 DLAWVGAFLEGDRTAFDRLVLRHKDRVFNLCWRLLGDREEANEQAQEVFVRVFRSIKDFR 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQ--GRRPPSSDVDAIEAENFESGGALKEISNPE--NL 121 S+F TWLY IAVNT +N L + RR +DA++ + + +P + Sbjct: 75 FKSSFSTWLYAIAVNTCRNRLKSSEYRRRRRMVSIDALQDPDCDRAVPELRDPSPSVLDR 134 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 M E ++ I+SLPE+ R + LR+++G++YEEIAA+ +GTV+SR+ RAR+ + Sbjct: 135 MTDRERDGLIQSAIDSLPEESRTIVVLRDIEGIAYEEIAAVTRLNLGTVKSRLARARQQL 194 Query: 182 DNKVQPLI 189 +K++ LI Sbjct: 195 RDKLKGLI 202 >UniRef50_Q01Z55 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z55_SOLUE Length = 186 Score = 192 bits (488), Expect = 7e-48, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 107/189 (56%), Gaps = 10/189 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M + TD+ LVE ++G+++AF +L Y+ K+ S+ R+ D+ Q+ F+K Y Sbjct: 1 MVLECTDRELVEGCRRGEREAFRVLFETYKDKIYSIALRFSGDQALAMDIAQDTFLKLYS 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 ++ FRG+S F TW+YR+ VN+ ++ R P +D E ++ + Sbjct: 61 SIADFRGESQFSTWVYRLVVNSCLDHKRKSWRMIPLAD---------ELLAVMRAPGDAL 111 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + ++ E+ + V R +E LPE+ R+ + LR +GL+YE+IA ++ C +GTV SR+ RA Sbjct: 112 HAVIRTEMSERVQRAVEKLPEEQRIVVVLRYTEGLAYEQIAEVIGCSMGTVASRLNRAHR 171 Query: 180 AIDNKVQPL 188 A++ ++ L Sbjct: 172 ALERRLANL 180 >UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T39_SYMTH Length = 210 Score = 192 bits (488), Expect = 7e-48, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 3/182 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + L+ R Q GD++AF L Y+ V V + DVVQE F+K +R++ +F+ Sbjct: 5 ELDLIARCQAGDRQAFEELFTFYRDDVFRFAYLVVRDANLAQDVVQETFLKVFRSIANFQ 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 S+F +WLYR+AVN A L RR A A + PE +L Sbjct: 65 FRSSFKSWLYRVAVNEAITLLRR--RRIKEELDPAPGAIQEHQRDRVDRAWQPEEAVLDS 122 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E R+++ I L R I L+ S EIAA++ CP GTV+SR+ RARE + + + Sbjct: 123 EERRLLHVAIGRLDPVHRTVIVLKYFHEFSDTEIAAVIGCPPGTVKSRLHRARELLRHHM 182 Query: 186 QP 187 Sbjct: 183 AR 184 >UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Comamonadaceae RepID=A1W8K1_ACISJ Length = 222 Score = 191 bits (487), Expect = 8e-48, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 7/183 (3%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 L + + R Q+G+ AF+ LV RYQ ++ + R S D ++ QE F+ AY+AL Sbjct: 44 HLEESDCIARAQRGEVAAFSELVARYQDRIYRFLFRMTRSQEDARELAQETFLNAYQALP 103 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 ++ D+ TWL+RIA N A + L R V +E + S + PE + Sbjct: 104 RWQPDAQLSTWLFRIARNQALDLLRRAQR------VAFVELDETLSEQMPADTPTPEAAL 157 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + + + + ++ L + R + LR+++ ++YE+IA ++ +GTV+SRI RAR + Sbjct: 158 QARQRIEALEGALQRLSVEHREILLLRDIEDMAYEDIAEVLGISLGTVKSRIARARAGLL 217 Query: 183 NKV 185 + Sbjct: 218 QLM 220 >UniRef50_C6CUE1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Bacillales RepID=C6CUE1_PAESJ Length = 198 Score = 191 bits (487), Expect = 9e-48, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 12/190 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD----VPDVVQEAFIKAYRA 60 +TD L+ ++ G+ + ++ L+ RYQ K+ + + + S D+ E F KAYR+ Sbjct: 1 MTDSQLIREIKDGNIELYSELMRRYQRKILAFIYHMLKSAKLELLAEDLCSETFYKAYRS 60 Query: 61 LDSFRG-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 L SFR D++F TWLY IA NT + L Q S ++ N ++ PE Sbjct: 61 LHSFREVDASFSTWLYTIARNTVLSELRKQK-----SAHVPLDESNMMPAAPPDQV--PE 113 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 +L E +V I +LPE R A+ LRE D L Y+EIA I+ V +V+S +FRAR Sbjct: 114 QHVLRNERMAMVREAINNLPEKQRSALILREYDQLDYQEIANILGQTVSSVKSLLFRARA 173 Query: 180 AIDNKVQPLI 189 ++ ++++P Sbjct: 174 SVKSQLEPYF 183 >UniRef50_Q1CYD9 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Cystobacterineae RepID=Q1CYD9_MYXXD Length = 217 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 12/201 (5%) Query: 1 MSEQL---TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIK 56 MS++ D+ L+ R Q GD AF LV ++ KV L R S D ++ Q+ F+ Sbjct: 14 MSDEAVMGEDRQLLARAQDGDVSAFEALVDAHRDKVYGLALRMTRSEADAAEITQDTFLS 73 Query: 57 AYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS 116 AY+ L FRGD+AF +W++RIA N A L RR + ++ F G+L + Sbjct: 74 AYQHLKDFRGDAAFGSWVHRIAANHALMRLRH--RRVAQAAEQELQGPEFTERGSLADYP 131 Query: 117 ------NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV 170 + E L EL + + + LPE R L++++GLSYE+IA + + Sbjct: 132 QTDWSRDAEEKALDAELGSAIQQASDRLPEGYREVFLLKDVEGLSYEQIAEATGDSIPAI 191 Query: 171 RSRIFRAREAIDNKVQPLIRR 191 +SR+ RAR A+ + R Sbjct: 192 KSRLHRARLALREAIDAFYNR 212 >UniRef50_B7KDZ7 RNA polymerase, sigma-24 subunit, ECF subfamily n=12 Tax=Cyanobacteria RepID=B7KDZ7_CYAP7 Length = 201 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 3/182 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRG 66 + L+ R Q+GD+ AF+ L RYQ KV+S + + + D+VQE FI+ ++ L R Sbjct: 17 ESELIVRCQRGDRTAFHQLYRRYQQKVSSTLYQLCGREMLEDLVQEVFIRVWKGLPKLRQ 76 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL-KEISNPENLMLSE 125 S F TWLYRI N A + +R + + ++ S L + P+ ++ Sbjct: 77 PSYFSTWLYRICWNVAVDGRRQFAKRKQEKRETSTDKDDLSSLETLFRSQDTPD--LMQL 134 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + +V R +++L D R I L +L+ + +EIA I+ PVGTV+SR+ AR AI + Sbjct: 135 HYQDLVQRGLQTLSLDHRAVIVLHDLEDIPQKEIAQILQLPVGTVKSRLHYARNAIKKFL 194 Query: 186 QP 187 Q Sbjct: 195 QQ 196 >UniRef50_Q2LQI1 Sigma factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQI1_SYNAS Length = 217 Score = 190 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 11/193 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + D V QKGD +AF +LV RYQ K+ ++ R + +VVQ+AF+ A+R + Sbjct: 17 EDNDLKWVLLCQKGDVEAFGILVERYQKKMLNVAYRMTGDYEESCEVVQDAFLAAFRTIK 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGR----------RPPSSDVDAIEAENFESGGAL 112 FRG++ F TWLY I +N+ KN L R P AI+ + + Sbjct: 77 KFRGEARFSTWLYGIVINSTKNRLKQLKRDKSRFWHAGDNPGDPGDGAIDGFDCLAASGS 136 Query: 113 KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 + + + +EL V + I L D R + LR++ GLSY+EI I+ P GTVRS Sbjct: 137 GQQESLLEHLEKKELEAGVQKCIGLLESDHREILILRDIQGLSYDEIVTILKIPPGTVRS 196 Query: 173 RIFRAREAIDNKV 185 R+FRAR A+ + + Sbjct: 197 RLFRARIALKDLL 209 >UniRef50_C1ZDS5 RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDS5_PLALI Length = 193 Score = 190 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 115/191 (60%), Gaps = 6/191 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + LTD+ L++ Q G + F LLV RY+ ++ ++R S D D+ QEAF +A+RA+ Sbjct: 2 QTLTDEELIQAAQTGHTEGFTLLVRRYEQRLFRSMTRISGSPEDAEDICQEAFTRAWRAI 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRR-PPSSDVDAIEAENFESGGALKEISNPEN 120 FRG+S FY+W++RIA+N L + R+ S +DA+ + + +P + Sbjct: 62 SKFRGESQFYSWVFRIALNL----LRSSKRQLKASVSLDAVRDAIGDDLEDQRADVDPSH 117 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + + +++V ++++ E R + L +L+ +SYEEIA ++DCPVGTVRSRI RAR+ Sbjct: 118 SLQVRDQQRVVQEAMDAMEESFRTVLVLTDLEEMSYEEIARVVDCPVGTVRSRIHRARQE 177 Query: 181 IDNKVQPLIRR 191 +++ L+R+ Sbjct: 178 FRGRMERLLRQ 188 >UniRef50_Q11XN6 RNA polymerase, ECF-type sigma factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XN6_CYTH3 Length = 194 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 3/187 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 TD L+ ++ D++ + V + +V ++ + D +V Q+ FIK ++++DSF Sbjct: 3 TDAELIAGLKSNDRRLYAEFVGAFASRVYNVAFNILHRKEDAEEVAQDVFIKVFQSIDSF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK--EISNPENLM 122 G TW+YRI VN + + L A+ R+ P S + E A+ E +P + Sbjct: 63 DGSCTLKTWMYRITVNKSLDALRAKKRKTPWSVFVHLFTGEGEGNKAIVAVEPVHPGIQL 122 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +E +I+ IE LPE + L + + +SY+EIA+ ++ V V S + RA++ + Sbjct: 123 EQKEEAEILLSVIEKLPERQKAVFVLYQFEDMSYKEIASTLEISVSAVDSLMSRAKKQLR 182 Query: 183 NKVQPLI 189 ++ L+ Sbjct: 183 EQLNSLM 189 >UniRef50_A2U163 RNA polymerase sigma factor n=1 Tax=Polaribacter sp. MED152 RepID=A2U163_9FLAO Length = 201 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 104/189 (55%), Gaps = 3/189 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 L++ ++ +Q+G AF +L+ Y+ KV + +VP+ D D+ QE F++ +R++ Sbjct: 11 LSELDFIKELQEGKSSAFGILLNDYEQKVFNTCMSFVPNKEDAEDIAQEVFLEVFRSIHK 70 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI--EAENFESGGALKEISNPENL 121 F+G+S TW+YRIA N + ++ + + + + +I A + E +P + Sbjct: 71 FKGNSKLSTWIYRIATNKSLEFIRKKNTKKRFAFMQSIVGNAIPIDKTNYFTEFKHPGII 130 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++E +F+ I +LPE R+ TL ++DG SY+EI I + +V S +FRA++ + Sbjct: 131 LENKEQAATIFKAINTLPESQRVVFTLAKIDGKSYQEIVEITSKSLSSVESIMFRAKKNL 190 Query: 182 DNKVQPLIR 190 K+ L + Sbjct: 191 KEKLSNLNK 199 >UniRef50_A9G0E6 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G0E6_SORC5 Length = 195 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 1/183 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 TD+ LV++ + GD +AF +LV RYQ ++ L V S + DV QE F++AY+ALD F Sbjct: 5 TDRELVDQARSGDAQAFGVLVRRYQKRIFRLAFHLVRSGAEAEDVTQETFVRAYQALDRF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G S +TWLYRIAVN + N + A+ S+ D E +P Sbjct: 65 DGRSEPFTWLYRIAVNLSLNMIRARKPSKNSTPADDPRIEALLLETRPSHGVDPAASTQR 124 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 EL + I++L + LR + L +DG+ +E+ + I+ CP GTV R+ AR + Sbjct: 125 RELAAALCDGIDALSDTLRTTLILVCIDGVPHEDASRILGCPEGTVAWRVHEARRKLRAY 184 Query: 185 VQP 187 + Sbjct: 185 LAE 187 >UniRef50_Q1IHX3 Sigma-24, ECF subfamily n=3 Tax=Acidobacteria RepID=Q1IHX3_ACIBL Length = 237 Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 5/193 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 ++ D L+ Q+GD AF LV +Y V L S D D+ QEAF+KAYR + Sbjct: 45 RVNDADLIRASQRGDHAAFEELVRQYDSAVLRLALHLTRSESDAQDIYQEAFLKAYRNIG 104 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRR----PPSSDVDAIEAENFESGGALKEISNP 118 +FR + +FYTW+YRI N + L + R P ++D E + + + ++P Sbjct: 105 NFRFECSFYTWIYRIVTNLCLDLLRKRQVRKEDAPVATDQRGEEYDLLDQVADDRSGASP 164 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E ++ EL + + +E L RM ++ GL I I++ T ++ +FR Sbjct: 165 ERDLMRRELGSRIAKALEKLTPRERMVFEMKHYQGLKLRTIGEILNTTEETAKNTLFRGT 224 Query: 179 EAIDNKVQPLIRR 191 + + + + R+ Sbjct: 225 QKLRAALADMKRK 237 >UniRef50_D2MK89 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK89_9BACT Length = 969 Score = 189 bits (481), Expect = 5e-47, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 3/180 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D L++R GDQ AF LV +YQ V +L+ R + ++ Q+ F+K Y+ L + Sbjct: 5 NDVDLIQRTLDGDQDAFTKLVNKYQKWVHALIWRKIGDFHIAEELTQDVFLKVYKRLSTL 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + F +WLY IA +L +R +DA+ E + N Sbjct: 65 KRPDHFPSWLYVIATRRCIAWLRK--KRVSIKSLDAMPTAQLEELCYTQYERNHLEAAAI 122 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E+ R++V ++ LPE R +TL L +S EI+ + TVRSR+ RAR+ ++ + Sbjct: 123 EQRRELVKSLLKKLPESERTVVTLFYLAEMSGAEISQFLGVSPNTVRSRLHRARQRLEKE 182 >UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QRQ4_CHLT3 Length = 188 Score = 188 bits (480), Expect = 5e-47, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 12/187 (6%) Query: 6 TDQVLVERVQKGD----QKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 +D L+ ++G+ +KAF L+ RYQ K+ + R + S D DV Q F+K Y A Sbjct: 3 SDHELIAEFKQGNAIRREKAFTELIRRYQEKIYWVCRRMLKSHDDADDVAQNVFVKIYHA 62 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 LD F S F+TW YRIA N + NY+ +Q R A+ + S A KE S+P+ Sbjct: 63 LDKFNEASQFFTWAYRIAANESINYMRSQKVRQ------AVGLDTLMSEPAGKE-SHPDE 115 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + E +++ I LPE R +R + LSYEEIA + VG +++ F A + Sbjct: 116 HLEKTEQSKLIEEAIARLPEKQRKVFVMRYYEELSYEEIAESLGTSVGGLKANYFHAFKK 175 Query: 181 IDNKVQP 187 I+ ++ Sbjct: 176 IEEILKK 182 >UniRef50_B8JDV3 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Anaeromyxobacter RepID=B8JDV3_ANAD2 Length = 292 Score = 188 bits (479), Expect = 7e-47, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 9/191 (4%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + +D L++R + GD++A + L+ R+Q +V + D D++QE + A R + Sbjct: 2 ETSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTVK 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP---- 118 FRG S+ TW+Y IA +++ + + RR + + + E G +++++P Sbjct: 62 DFRGASSVSTWMYTIA----RSFCIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTP 117 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + ++ Q + I L R + LR+++GLS E+A +M V V+SR+ RAR Sbjct: 118 DESLAGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAEVMGLSVEAVKSRLHRAR 177 Query: 179 EAIDNKVQPLI 189 A+ + PL+ Sbjct: 178 VAVREALVPLL 188 >UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU8_PELCD Length = 214 Score = 188 bits (479), Expect = 8e-47, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 3/190 (1%) Query: 1 MSEQLTDQV--LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKA 57 +SE +TD L+ER+++GD+ AF LV + V +L R + + D+ QEAF++ Sbjct: 19 LSEPMTDSESLLLERIRQGDEGAFTQLVSGHLSSVVNLAYRMLGDRQEAEDLAQEAFLRL 78 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 +R+L SFRGD TWLY++ +++ + R E + ++ Sbjct: 79 HRSLPSFRGDCRIKTWLYKVVSRLVIDHIRREQVRRRIFFFRKHEDDPDPVANFADPSAS 138 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P + +L +E RQ +F+ +E L R LR +GL +EIA ++ GTV++ + RA Sbjct: 139 PSDQLLGQETRQKLFKAMEKLSGRQRAVFVLRHQEGLPLKEIAQVLHLKEGTVKAHLHRA 198 Query: 178 REAIDNKVQP 187 + I + Sbjct: 199 VQCIRQEFTD 208 >UniRef50_C0ZBY3 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBY3_BREBN Length = 189 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D +L+++VQKG++ A+ LV +Y+ ++ S + R D D+ QEAFIKAY LD + Sbjct: 3 DDWLLIQQVQKGNRDAYAHLVDKYKERLYSYLYRMTGQQQDAQDLTQEAFIKAYCQLDKY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + AF WLYRIA N + + + L E PE L Sbjct: 63 KPTDAFLAWLYRIASNLCIDAWRKNKHYAKTPLEET----------RLIESDTPEKAYLE 112 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E + + + I +L E+ R+ L+ L+ +SY+EI+ I+ PV TV+ RI A++ + Sbjct: 113 KEKQDTLQQQIMALREEYRVVFMLKYLEQMSYKEISEILHVPVTTVQMRIHHAKKKLRAS 172 Query: 185 VQP 187 + Sbjct: 173 IAQ 175 >UniRef50_C7PJ26 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJ26_CHIPD Length = 185 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 8/187 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + ++ L+ R+ GD KAF +LV +YQ V +V+R + + D D+ QE FIK ++ L Sbjct: 2 IDEKELIPRILHGDMKAFEVLVTQYQGLVFHVVNRIINTQEDKEDICQEVFIKVHQHLRR 61 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F S TW+ RIA TA NY S + IE +F +P L+ Sbjct: 62 FEYKSRLSTWIARIAYLTAINYSKKYSSGRTVSHPEDIENYSFTD-------EHPGGLLD 114 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +++ V R I +PE R +TL L+ SY+EI I P GTV+S +FR R+ + + Sbjct: 115 KKDVTAYVNRLIAQMPEQYRTVLTLYHLNEFSYQEIEEITGMPEGTVKSYLFRGRKLLKD 174 Query: 184 KVQPLIR 190 K+ ++ Sbjct: 175 KLGVYLK 181 >UniRef50_C1F7G4 RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7G4_ACIC5 Length = 223 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 93/190 (48%), Gaps = 16/190 (8%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D +LV + + GD +AF LV +Y +V + + D DVVQ+AF+KAY LD F+ Sbjct: 30 DVLLVNQARDGDVQAFEKLVRQYDRQVFRIAQHITQNREDAEDVVQDAFLKAYEKLDQFQ 89 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGR-RPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G+S FYTWL RI VN A L + R S D D E +PE L Sbjct: 90 GNSKFYTWLVRITVNEALMRLRKRRTGRMVSIDEDVETDEGSMPRDLADWSPDPEALYGQ 149 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVR------------- 171 E+ +I+ +TI+ LP R+ LR+++GLS EE A + V V+ Sbjct: 150 SEMAEILRKTIQGLPPGFRVVFVLRDVEGLSTEETAESLGLSVPAVKSRLLRARLQLRER 209 Query: 172 -SRIFRAREA 180 SR FR R+ Sbjct: 210 LSRYFRDRKK 219 >UniRef50_Q1IJV0 Sigma-24, ECF subfamily n=2 Tax=Acidobacteria RepID=Q1IJV0_ACIBL Length = 241 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 8/193 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 + +V ++ G + A++ L+ +Y + SLV R + D D QE FIK +R + F Sbjct: 18 EEGAIVAELKAGSEDAYSWLIAQYNQPIYSLVYRILDDPSDAADTTQEVFIKVFRGIKRF 77 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGA-------LKEISN 117 +S+ TW+YRIA++ A N R E E + + + Sbjct: 78 NSESSLKTWIYRIALHEASNRRRWFFRHKAKEASIEAGPETEEHSHPIGLKDTLVDDSES 137 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P + + E+ V +++L E R + LR+++ LSYE+IA I + +GTV+SR+ R Sbjct: 138 PFDTVFHTEVSAKVEEELKNLQEPYRTTVILRDIEELSYEQIAEITETSLGTVKSRLVRG 197 Query: 178 REAIDNKVQPLIR 190 REA+ ++ ++ Sbjct: 198 REALKKRLTRYVK 210 >UniRef50_Q01V29 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01V29_SOLUE Length = 220 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 3/186 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 ++ D LVE +++G ++A+ L+ R+Q V +L R + G+ DVVQE F+K +R + Sbjct: 18 EVEDFRLVESLREGSERAYEELLTRFQQPVYALALRLLDDQGEACDVVQEVFLKVFRNIG 77 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVA--QGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 SFRG S TW+YRI VN A N + RR A E +P + Sbjct: 78 SFRGQSTLKTWIYRITVNEAHNARRWFFRHRRAEVELDKAPEDSRNLKEVIPDRSRSPFD 137 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 S E ++ +E + R A+ LR++ L+YEEIA ++ +GTV+SRI R REA Sbjct: 138 EAFSREQHVMIEAALERINPIFREAVVLRDITDLAYEEIAEVLGVSLGTVKSRILRGREA 197 Query: 181 IDNKVQ 186 + ++ Sbjct: 198 LREELA 203 >UniRef50_D0MJ41 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJ41_RHOM4 Length = 221 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 1/188 (0%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 +Q++D+ L+E+ Q G +AFN+LV RY ++ + ++ D++QE F++ YR Sbjct: 29 QQMSDEDLMEQFQAGTVEAFNILVERYSERLMHYLYGFLGDARRCEDLLQETFLRVYRNR 88 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 S++ + F TWLY IA N A++ + RR S + E +P+ Sbjct: 89 HSYQRIAKFSTWLYTIAGNLARSEYRKRKRRRVYSIQSVNRDDEEYEIALPDETFSPDKH 148 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 S + + + S+P D R + LR++ L+YEEIA I P+GTV+SRI R R + Sbjct: 149 AESIIQDKYIQEALSSIPPDFREVVVLRDVQQLTYEEIAQITGLPMGTVKSRINRGRTKL 208 Query: 182 DNKVQPLI 189 ++ + Sbjct: 209 QALLKDIY 216 >UniRef50_A7HKZ1 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKZ1_FERNB Length = 206 Score = 186 bits (474), Expect = 3e-46, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 102/183 (55%), Gaps = 1/183 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 +Q LV+ + KGD++A+ L Y K+ +LV Y+ S D+ DVVQE F++ Y+ + FR Sbjct: 21 DEQRLVKALAKGDEEAYKYLYRNYASKIGALVKSYLGSDDIDDVVQEVFLRIYKNVKKFR 80 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S TW+YRIA+N N R P D+ ++ + + + + ++ Sbjct: 81 GESKLSTWIYRIAINVCNNMYRKMKGRGPVVDLTE-PMDDEDYTFQFSTDEDVQKNVTND 139 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + + + + +E+L + R + ++E+DGL+YEE+ I+D P GT++SR+ ++ I Sbjct: 140 IMYEKLRKILENLSPEDRAILFMKEIDGLTYEEVGKILDKPEGTIKSRLHYIKQTIRKAF 199 Query: 186 QPL 188 + + Sbjct: 200 KEV 202 >UniRef50_A9BGN8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGN8_PETMO Length = 186 Score = 186 bits (474), Expect = 3e-46, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 1/183 (0%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 + ++ +E ++K D AF L Y K+ ++ YV ++ D +QE FI+ + ++ F Sbjct: 1 MIEEKFIEDLKKNDPDAFKKLYEEYAPKIYGVLKNYVNHDEIEDALQEVFIRIIKGINGF 60 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 +G S TW+YRIAVN KNY R + VD + + +N +N +L Sbjct: 61 KGLSKLSTWIYRIAVNVGKNYSRKYQR-SKETSVDFEDETDQNPNIQAISNTNVKNEVLE 119 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E Q++ +E L ++ R+ I LR++DG+SY EIA IM+ P+GTV+S++ AR+ + Sbjct: 120 ELDYQMILNIMEKLDKEERLLIKLRDIDGMSYNEIAEIMEIPLGTVKSKLHYARKKLRQF 179 Query: 185 VQP 187 ++ Sbjct: 180 IEE 182 >UniRef50_Q67K53 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67K53_SYMTH Length = 203 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 3/185 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 TD+ LV KGD+ AF +V RY+ ++ L R + + D D VQE +K AL F Sbjct: 3 TDEELVAAYLKGDEAAFEEIVRRYEDRLYRLSYRMLGNHHDALDAVQEILVKLMAALPKF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE--ISNPENLM 122 G S F TW+YR+A NT + +GR S +E S L + NP+ + Sbjct: 63 EGRSRFGTWVYRLAANTCLDIRRKRGRTAAESLEATLEFSPAASLAILDDEPADNPDLYL 122 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + +V ++ LPE R + LR+L+ S ++A ++ VG +++R+ RAR+A+ Sbjct: 123 EQQYRENVVRAALDKLPESQRRLLELRDLEDFSNSQVADMLGIEVGALKARLHRARQALK 182 Query: 183 NKVQP 187 + Sbjct: 183 RVLDA 187 >UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Planctomycetaceae RepID=D2R1D3_9PLAN Length = 189 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 6/185 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+ LV+ V G+ +AF LLV RYQ ++ + + S + DVVQEA ++AY L SF Sbjct: 4 DDKHLVKLVLSGETEAFGLLVARYQDRLFTAMVHVARSRSEAEDVVQEAMVQAYTKLASF 63 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + +S+FYTWLYRIA N A + + R P +S ++ E + P ML Sbjct: 64 QAESSFYTWLYRIAFNQAMT--IRRKREPLTSIDESRYGSQHEPVATSTAVDGP---MLQ 118 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +V R I +L ++ R + +RE+DG YE+I+ I+D PVGTVRSR+ RAR + ++ Sbjct: 119 SEQAALVHRAIATLADEFRTVLVMREIDGFDYEQISQILDLPVGTVRSRLHRARLQLRDQ 178 Query: 185 VQPLI 189 ++ L+ Sbjct: 179 LKQLL 183 >UniRef50_Q11VU6 RNA polymerase sigma-24 factor n=3 Tax=Sphingobacteriales RepID=Q11VU6_CYTH3 Length = 208 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 3/183 (1%) Query: 7 DQVLVERVQ-KGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D +LVER + GD+KAF L+ RY+ V ++ + + + D D+ EAF KA++ L F Sbjct: 20 DFLLVERAKTSGDEKAFAELMSRYKKPVYHMILKMIRNVDDAEDLTIEAFAKAFKNLHKF 79 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLML 123 D F TWL+RIA N +++ + S + + +K+ + P + Sbjct: 80 NPDFTFSTWLFRIATNNCIDFIRRKKLVTTSISSTYKDDNGEHTEMDIKDSNLTPFEETI 139 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + +I+ + LP + + LR + SYEEIA ++ P+GTV++++ RARE + + Sbjct: 140 KSQKIEIIQAIVSKLPPKYQTLVRLRYFEEYSYEEIAVAIEAPLGTVKAQLHRARELLLD 199 Query: 184 KVQ 186 V+ Sbjct: 200 LVK 202 >UniRef50_D2QJ11 RNA polymerase, sigma-24 subunit, ECF subfamily n=12 Tax=Bacteroidetes RepID=D2QJ11_9SPHI Length = 190 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 4/186 (2%) Query: 5 LTDQVLVERVQKGDQK--AFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRAL 61 +TD+ ++ + + + AFNLLV +YQ K+ + + V D D+VQE FIK + +L Sbjct: 1 MTDEEILVKYRDPSSRNYAFNLLVRKYQQKIYWHIRKMVIDHDDADDLVQETFIKVWNSL 60 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + FRGDS YTW+YRIA N N+L RR + +E E E + + Sbjct: 61 EQFRGDSQLYTWVYRIATNECLNFLNK-KRRRFFLPIGDVEGELMEKLESNAAYVTSGSE 119 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 EE++ + + + LP+ R+ ++ D + YEEI+ I VG +++ A + I Sbjct: 120 PSGEEVQMKLQKALLKLPDKQRLVFNMKYFDDMKYEEISEITGTSVGALKASYHLAVKKI 179 Query: 182 DNKVQP 187 ++ + Sbjct: 180 EDFITK 185 >UniRef50_UPI00016C0B7C RNA polymerase ECF-type sigma factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0B7C Length = 198 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 7/185 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + + L++R Q GD AF +L+ Y+ + + + + + D D QE IK ++ L Sbjct: 1 MDESSLIKRAQSGDVGAFEVLIKNYESTIYRICFKVLKNEADSFDAAQEVCIKIWKQLGK 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLM 122 F S F TW+YRIA N + L + S +N E L++ N E + Sbjct: 61 FEEKSKFSTWVYRIATNQCLDILRKGKNKKVVSI-----NQNEEWALELEDTKINIEKQV 115 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 E +I+ ++ L ++ I L+++ LSYEEIA + +GTV+SR+FRAR A+ Sbjct: 116 EDAERLRILKSALDELKKEYSEIIILKDVKNLSYEEIATEKNISLGTVKSRLFRARNALK 175 Query: 183 NKVQP 187 N ++ Sbjct: 176 NILKQ 180 >UniRef50_Q67KL8 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KL8_SYMTH Length = 188 Score = 185 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 +Q + R Q GD +AF LV +Q V R D D+ EAF++AYR+L F Sbjct: 9 EQEWIRRAQGGDAEAFAALVRLHQDGVYGFCLRMTGRREDALDLTSEAFLRAYRSLAGFD 68 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 F WL RIA N +++L A+ +RP E+ P +L+ Sbjct: 69 VTQPFRPWLLRIAANLCRDHLRARQQRPA-------PVEDAVLADLPDPAPPPPGQVLAV 121 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 R V + + LPE R A+TL + LSY+EI+ +++ PVGTV + + RA+ + ++ Sbjct: 122 HDRAAVRQAVAELPEPYRTAVTLHYFNHLSYQEISEVLNIPVGTVGTHLHRAKRLLRKRL 181 >UniRef50_C0ZCF1 RNA polymerase ECF-type sigma factor n=3 Tax=cellular organisms RepID=C0ZCF1_BREBN Length = 196 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 12/190 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD----VPDVVQEAFIKAYRA 60 +TD L+ +++G+ + + L+ RY+ K+ S V+ + D+ QE F KAY++ Sbjct: 1 MTDSQLIREIKEGNLECYAELIRRYEKKILSFVTHLLRQAHLEHIAEDICQETFYKAYKS 60 Query: 61 LDSFRG-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + SFR ++ F TWLY IA N+ + L R +D S L PE Sbjct: 61 IHSFRDVEATFSTWLYTIARNSVLSELRKS--RNSDVYLDDTLQVPMASPKTL-----PE 113 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ++L E +V I SLPE R A+ LRE + + Y EIA I+D V +V+S +FRAR+ Sbjct: 114 QVLLRNERESMVRLAINSLPEKQRSALILREYEQMDYTEIATILDLTVSSVKSLLFRARQ 173 Query: 180 AIDNKVQPLI 189 +I +++ I Sbjct: 174 SIRGQLENYI 183 >UniRef50_A0LYR6 RNA polymerase sigma factor n=1 Tax=Gramella forsetii KT0803 RepID=A0LYR6_GRAFK Length = 195 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 7/186 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 TDQ L+E+V GD AF LV RYQ+ V ++ R + + + +V Q++FIKAY +L SF Sbjct: 5 TDQYLIEKVLNGDTNAFGELVDRYQNFVFTIAIRILKVTEEAEEVAQDSFIKAYDSLSSF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGDS F TWLYRI + + + + R + + + L I N MLS Sbjct: 65 RGDSKFSTWLYRIVYHKSLDRIKMNKRHRTYEINEEVTED------TLNHIENGLEFMLS 118 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E QI+ I LPE I+L L+ S +EI + D ++ +++R+R+ + + Sbjct: 119 AERTQIIKNCISQLPETEAAIISLYYLEEQSVKEIVKVTDLTEDNIKIKLYRSRKKLFSL 178 Query: 185 VQPLIR 190 ++ I+ Sbjct: 179 LEGYIK 184 >UniRef50_B3QZ33 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Bacteroidetes/Chlorobi group RepID=B3QZ33_CHLT3 Length = 266 Score = 185 bits (471), Expect = 7e-46, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 29 YQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 + + + R D D+VQE ++KAYR DSF + WL+RI N+ N Sbjct: 91 HIDSLYNFALRMTGDPEDANDLVQETYMKAYRFFDSFEKGTNCKAWLFRILKNSYINRYR 150 Query: 88 AQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAIT 147 + ++P D D I+ + + ++ + + + + V R + SLPED R + Sbjct: 151 KESKQPDKVDYDDIKEFYHTIRHSSSDSNDMQEKLFGNLMDEQVSRALNSLPEDFREVVQ 210 Query: 148 LRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIR 190 L +++G +YEEIA ++DCP+GTVRSR+ R R+ + +K+ + Sbjct: 211 LCDIEGFTYEEIANMVDCPIGTVRSRLHRGRKILRDKLIDYAK 253 >UniRef50_A6G087 RNA polymerase sigma-E factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G087_9DELT Length = 198 Score = 185 bits (471), Expect = 7e-46, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 6/168 (3%) Query: 26 VVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKN 84 + RYQ KV ++ ++ + D DVVQE+FIK +R + F G+S+FYTWLYRI N + Sbjct: 1 MQRYQRKVYAVAFGFLRNQEDALDVVQESFIKVHRYIGKFEGNSSFYTWLYRIVANLCID 60 Query: 85 YLVAQGRRPPSSDVDAIEAENFESGGA-----LKEISNPENLMLSEELRQIVFRTIESLP 139 +L R D + + + + L + +P +++ +E+ Q V +++ L Sbjct: 61 HLRKAKRHRDVEFDDGLRHDGKDEPPSDLLPHLAQFGDPSDMLRRKEILQAVEASLDHLS 120 Query: 140 EDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 + R I +REL G+SYEE+A M C GT+ SR+F AR + + Sbjct: 121 DKHRAVIVMRELQGMSYEEMAQAMKCSKGTIMSRLFHARRNMQKLLTE 168 >UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB78_GEMAT Length = 200 Score = 185 bits (470), Expect = 8e-46, Method: Composition-based stats. Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 5/189 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 L D +V Q+G + AF LV RY+ V SLV R V + D+ Q++FIK +D Sbjct: 9 TLPDADVVRLAQQGRELAFRELVRRYERPVFSLVYRMVRDRETAEDLAQDSFIKVLNHID 68 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL----KEISNP 118 + + F +WL++IA N A ++L + S D A E E + Sbjct: 69 RYSPEFKFSSWLFKIANNVAIDHLRRRRVETISMDGSPHAATASEVEATSLELQSEQESA 128 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + ++EL + R I SL + R I LR ++G SYEEIA +D P+GTV++ I RAR Sbjct: 129 LDEIEAKELGSAIERAIASLRPEYRACIMLRHVEGRSYEEIATTLDLPLGTVKTYIHRAR 188 Query: 179 EAIDNKVQP 187 + ++P Sbjct: 189 HELRRALEP 197 >UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AX4_SOLUE Length = 236 Score = 185 bits (470), Expect = 8e-46, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 4/183 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 DQ LV R GD+ A+ LV ++ +V L R+ S + D+ QE F++ ++ + +FR Sbjct: 51 DQSLVSRCLGGDEAAWEELVRQHTRQVYGLCFRFTNSAQEAQDLTQEVFLRVFKTIKTFR 110 Query: 66 G-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + +F TWL R+ N ++ + R+ +D + E G + P+ + Sbjct: 111 STEGSFGTWLARVTRNLLIDHYR-RTRQQRVTDSIEDQLPVLEQVGT-SGAARPDQALAG 168 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +I+ T++ L DLR A+ LR+L + Y EIA ++D P GTV+SRI R R + Sbjct: 169 REASEILQATLQKLSPDLREAVILRDLQEMEYREIADVLDIPEGTVKSRINRGRAELARL 228 Query: 185 VQP 187 ++ Sbjct: 229 LRK 231 >UniRef50_B3E7K8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacter lovleyi SZ RepID=B3E7K8_GEOLS Length = 203 Score = 185 bits (470), Expect = 9e-46, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 15/200 (7%) Query: 1 MSEQLT--------DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQ 51 MS+ ++ +Q L+ + GD AF LV+RYQ + ++ R + D ++VQ Sbjct: 1 MSDDMSATNTEIADEQQLLAACRNGDTHAFEQLVLRYQRGLYNVAFRISGNEADAAEIVQ 60 Query: 52 EAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGA 111 E F+ A+R + +FRG++ TWL IAVN A+ Q R S ++++A E GA Sbjct: 61 ETFLAAWRKIKAFRGEARLSTWLTSIAVNQART--RWQQNRQKRSREESLDASAEEKQGA 118 Query: 112 L----KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPV 167 E + L+ LR ++ R I +L + R + LR++ + Y+E+ ++ Sbjct: 119 PLQIASEQPSALELLERSVLRGLLERCIRALDQGFREVLVLRDMREMPYDEMGQVLGLRE 178 Query: 168 GTVRSRIFRAREAIDNKVQP 187 GTV+SR+FRAREA+ + V Sbjct: 179 GTVKSRLFRAREAVRDCVTK 198 >UniRef50_B7IH95 RNA polymerase sigma factor n=7 Tax=Thermotogaceae RepID=B7IH95_THEAB Length = 205 Score = 185 bits (470), Expect = 9e-46, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 97/183 (53%), Gaps = 1/183 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 ++ ++ ++KG++ A+ L Y K+ + Y + DV DV+QE ++ Y+ + F+ Sbjct: 19 DEKNFIKALKKGEEWAYRRLYREYAPKIGAFARSYFGTDDVDDVIQEVMLRIYKGIKKFK 78 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLS 124 GDS+ TW+YRI VN ++ + V+ +E+ + ++ + + Sbjct: 79 GDSSLSTWIYRITVNVCNTLYEKYKKKNEKTFSVENNNSEDDVEIDIPDKETDVQKEVTQ 138 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E L + + + +E L E R+ I +R++DGLSY EIA I+ P GTV+SR+ ARE Sbjct: 139 EILYEKILKALEKLSEKERVLIRMRDIDGLSYSEIAEILGIPEGTVKSRLHNAREKFKKI 198 Query: 185 VQP 187 ++ Sbjct: 199 LEE 201 >UniRef50_A1HLQ9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLQ9_9FIRM Length = 183 Score = 185 bits (470), Expect = 9e-46, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 9/181 (4%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + V + + GD+ AF LV Y+ ++ ++ V D D+ Q+ FIKA++A+ + + Sbjct: 6 KAWVSKARSGDKAAFGKLVEFYRGRIFAVAYGIVGRREDAEDIAQDTFIKAFKAISALKA 65 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 + AFY WL RIAVNT+ NY + DA E + PE E Sbjct: 66 EEAFYGWLVRIAVNTSINYKKGAKDKQFVPIDDAAEL--------FYQGETPETAAEKRE 117 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++ + + LP + R + LRE++GL+Y+EIAA++D P+GTV+SRI AR+ + VQ Sbjct: 118 GEAMMAKLLAELPPEHRAVLVLREIEGLAYDEIAAMLDIPLGTVKSRINHARDKLRRAVQ 177 Query: 187 P 187 Sbjct: 178 K 178 >UniRef50_Q93RF4 Orf protein n=1 Tax=Treponema medium RepID=Q93RF4_TREMD Length = 215 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 11/188 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 +++ L D + + V G+ +AF +LV +YQ +V L + + D D VQ+ +KAY Sbjct: 16 LNQTLRDYEVCKAVLNGNTQAFAVLVAQYQKRVYMLGLSFFDNTDDCEDFVQDVMLKAYA 75 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FR ++ F TWL RIA NTA N A+ RR S D E E NPE Sbjct: 76 ALGTFRAEAPFATWLMRIAYNTAIN--SAKKRRSYMSLADGTEIEYR--------GDNPE 125 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L+E + V + +LP++ R+ I L +SY +IAA+ + P+ T++S IFRA++ Sbjct: 126 EKHLNECIILSVREAVNNLPDNYRICIDLYFFYDMSYTDIAAVTELPLNTIKSHIFRAKK 185 Query: 180 AIDNKVQP 187 + ++ Sbjct: 186 LLREYLKE 193 >UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6 Tax=Chloroflexi (class) RepID=A9WDI9_CHLAA Length = 193 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 10/189 (5%) Query: 1 MSEQLTDQ-VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAY 58 MSE D+ LV R GDQ A +V RY + + R + + D VQE F++A+ Sbjct: 1 MSELQPDETELVARACAGDQSACATIVQRYTGVLYNQAYRMLGDAFEAEDAVQEVFLRAF 60 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118 R L S+ TWL I N + L + + + A + + G P Sbjct: 61 RNLQSYDPSRRLVTWLLTIGSNYCIDRLRRRRFNWLTLEDVAFWLPSTQPG--------P 112 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E L +++V R ++ LP R LR LSYEEI ++ TV++R+ RAR Sbjct: 113 ERSALQRAQQEVVQRALQRLPVTYRGVTVLRYWYDLSYEEIGQVLGLTEATVKTRLHRAR 172 Query: 179 EAIDNKVQP 187 + + + Sbjct: 173 KMLQEALAA 181 >UniRef50_C4KZK8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KZK8_EXISA Length = 191 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 1/178 (0%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDS 68 LV+ ++ G+ +F LV Y+ V ++ + + G+ D QEAFI+AY +D++ Sbjct: 8 LVDELRAGNHDSFAELVELYKDGVFAIAYKILYDRGEAEDAAQEAFIRAYTRIDTYDAQY 67 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 F TWLYRI N A + L + A E P+ ++ E+R Sbjct: 68 KFKTWLYRITTNVAIDRLRKRKPEYSMDAEIAGTDGLTYQDHLADEAPQPDAQVVHREIR 127 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 + I+ LP+ R+ + L+ +D LS +EI+ ++D PV TV++RIFR RE + Q Sbjct: 128 SEMHEAIKQLPDKYRIPLLLKYVDDLSLKEISVMIDMPVATVKTRIFRGREMLKTIFQ 185 >UniRef50_C8R1R3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1R3_9DELT Length = 189 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 105/188 (55%), Gaps = 4/188 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E+ LV ++KGD++AF LV +Q ++ +L YV + D+ Q+ FI +R+L Sbjct: 5 EENESAELVRALRKGDERAFADLVRLHQGRIYNLALNYVKDEEEAKDLTQDIFITVHRSL 64 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 S R ++ F WLY++A+N +N RR + ++ + L + +PE + Sbjct: 65 ASLRDEAKFGAWLYQLALNHCRNRYKRLQRRGFFR---SSSLDDPDRPLHLTDGESPEGV 121 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + ++V R I L + I LR+++GL+Y+EI I+ P+GTV+S++ RAR A+ Sbjct: 122 LGRRDQDRLVRRAIAELAPAEKEIILLRDIEGLTYDEIGDILAIPLGTVKSKLNRARLAL 181 Query: 182 DNKVQPLI 189 ++++ ++ Sbjct: 182 KSRLEKVL 189 >UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4L0_BREBN Length = 185 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 10/187 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 D+ ++ V +G+++A+ L+V +Y+ K+AS++ R + S D D+VQE FIKAY +L + Sbjct: 3 DDREVIAEVLQGNKEAYALIVNKYKGKIASILQRTLHHSHDAEDMVQEVFIKAYYSLPDY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + + +F WLYRIA+N + L + R P +++D E PE L Sbjct: 63 KPNCSFSAWLYRIAINRGIDELRKRKRMPSVTEMDVE---------VKDECPIPEEDYLE 113 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E R + + + +L ++ R + L L LSY EI + V TVR R+ AR+ + ++ Sbjct: 114 KEQRHALRQQMMTLDKNHRAILDLHYLQHLSYREIGNKLSLSVDTVRMRLSYARKKLRDQ 173 Query: 185 VQPLIRR 191 + ++ Sbjct: 174 LSKPEKK 180 >UniRef50_B2UN43 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B2UN43_AKKM8 Length = 197 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 3/189 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 +E D L+ RV+ GD A +LV ++Q+ V + V+R + +G + D+ Q+ FI+ ++ Sbjct: 10 AEPDEDAKLMLRVRNGDASAMEMLVRKHQNSVYATVARMLNNGPETEDIAQQVFIRIWKG 69 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 ++ + F TW++ I N N + Q R+P +S DA+E E L+ P+ Sbjct: 70 AGNYEPSARFTTWMFTILRNLVFNEVRRQKRKPTTS-ADAMEEEGG-MAVFLEPSQTPDE 127 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + EL+ V I +LPE R+A+ LR + + YEEIA +D V +S +FRAR Sbjct: 128 ALEHTELQHAVDAAIAALPEKARLAVQLRRFENMPYEEIARALDMTVPATKSLLFRARNM 187 Query: 181 IDNKVQPLI 189 + + + Sbjct: 188 LKEALASFL 196 >UniRef50_A8TRK4 Sigma-24, ECF subfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRK4_9PROT Length = 216 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 4/190 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALD 62 + + LV R++ GD++AF +LV R ++ + R V D VQEAF+ A+RA+ Sbjct: 21 EAEEGALVARLKAGDERAFEILVRRESGRLLAAARRLVRDEAAAHDCVQEAFLSAFRAIG 80 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGR---RPPSSDVDAIEAENFESGGALKEISNPE 119 SF S+ WL+RI +N A L Q R P + + +A+ + +PE Sbjct: 81 SFEPRSSIGAWLHRITINAALMRLRKQRRLAETPIDDLLPSFDADGWRRDTVDVPDGDPE 140 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + +R V I+ LP+ R A+ LR+L+G S +E A + G ++ R+ RAR Sbjct: 141 SELERRRVRDFVRGKIDMLPDGYRTALVLRDLEGWSTKEAADALGIAEGAMKVRLHRARS 200 Query: 180 AIDNKVQPLI 189 + ++PL Sbjct: 201 TLKRLIEPLW 210 >UniRef50_Q8DM09 Group3 RNA polymerase sigma factor n=2 Tax=Cyanobacteria RepID=Q8DM09_THEEB Length = 201 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 10/176 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRG 66 D+ L+E+ G K F L R+Q +V SL+ + + + D+VQE F++A++ L + Sbjct: 26 DRPLIEQCLAGHPKGFRELYQRHQQRVRSLLFQLCGAVALDDLVQEVFLRAWKGLKGLKH 85 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 ++ F TWLYRIA N A +Y R + + F + L+++ Sbjct: 86 EAKFSTWLYRIAWNVACDYRRQLATRKSRHQQYLDQQQPFTTAPDLRQLH---------- 135 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +V R + +LP + R + + +L GL +EIA I++ PVGTV+SR+FRAR ++ Sbjct: 136 YEDLVQRGLATLPLEYRSILVMHDLQGLPQKEIAEILNIPVGTVKSRLFRARGSLR 191 >UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacteria RepID=A7HRP1_PARL1 Length = 218 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 11/186 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 ++ +D LV V GD+ A L+ R+ ++ +L R + S D DV QE F++ + Sbjct: 28 DEPSDDELVAAVALGDEAACRELMNRHLPRITALGRRMLGSQADAEDVAQEVFLRVWTNA 87 Query: 62 DSFR-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + G + F TWL+R+A N + L R + D+DAI E G P+ Sbjct: 88 GKWEPGRAQFSTWLHRVATNLCLDRLRKN--RGGTEDIDAIPEPASEEPG-------PDR 138 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + EL + V +++LPE R AI L GL+ E A I+ V V S + RAR Sbjct: 139 RLEQSELAERVEAALQALPERQRAAIVLSHYQGLTNIEAAEILGITVEAVESLLSRARRQ 198 Query: 181 IDNKVQ 186 + + Sbjct: 199 LRGSLA 204 >UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QW1_RHOFD Length = 187 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 ++ V R + GD+KAF+ LV R+Q V + R + S D ++ QEAFIKA++AL + Sbjct: 10 SEDDWVSRARAGDRKAFSELVRRHQKPVHRYLLRMLGSHDDAMELTQEAFIKAWQALPQW 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 R ++ F TWL+RIA NTA + L + D+ +A E +P + Sbjct: 70 RPEAQFRTWLFRIANNTALDALRHRKLIEFVPLEDSFDAPGSE--------PDPAHQAQV 121 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + + +++ L + R + LRE++ +SYEEI +++ GTV+SR+ RAR A+ Sbjct: 122 TQEVRQLDTSLKKLMPEHRQILLLREVEEMSYEEIGSVLSLNEGTVKSRLARARAAL 178 >UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinomycetales RepID=A0QCH1_MYCA1 Length = 424 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 12/175 (6%) Query: 17 GDQKA---FNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYT 72 GD+ A ++ LV ++ +V L R + D D+ QE FI+ +R++ +++ + F Sbjct: 73 GDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGT-FEG 131 Query: 73 WLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVF 132 WL+RI N + + + R +EA + + NPE + L + Sbjct: 132 WLHRITTNLFLDMVRRRSRIR-------MEALPEDYERVPADEPNPEEIYHDSRLGPDLQ 184 Query: 133 RTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 ++SLP + R A+ L +++GLSYEEI A + +GTVRSRI R R+A+ + + Sbjct: 185 AALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAA 239 >UniRef50_A6GAU3 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAU3_9DELT Length = 205 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 12/186 (6%) Query: 4 QLTDQVLVERVQKG-DQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 ++D+ LV G D+ AF LV R+Q KV L+ R D+ QE F++AYR L Sbjct: 24 AMSDEELVTLAGSGRDKSAFAELVRRHQGKVRGLLLRLSADPTLADDLAQEVFLRAYRGL 83 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F G S F TWLYRIA N N+ R S ++ A+ A + +P Sbjct: 84 VGFEGRSRFSTWLYRIAYNVFLNH------RTRSKELAALPTGFESQAAAPEGELSPSRF 137 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++R+ + I LPE R +TL L+ +SY EIA ++D P+GTV++ + RA++ + Sbjct: 138 ----DMRRDLAAAIAGLPERYRAVVTLYYLEDVSYPEIAEVLDLPLGTVKTHLHRAKKLL 193 Query: 182 DNKVQP 187 +++ Sbjct: 194 RERLRD 199 >UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Verrucomicrobia RepID=B1ZXG6_OPITP Length = 247 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 6/187 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D LV R +GD+ AF ++ RY+ K+ ++ + + D ++ Q+ FI+A+R L +FR Sbjct: 31 DDELVRRFAQGDEAAFVEIMERYRGKIFTVTLGLLRNHADAEEITQDTFIRAHRGLANFR 90 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE-----ISNPEN 120 GDS+ TWLYRIAVN A+N RR + A + +S + + +P Sbjct: 91 GDSSLATWLYRIAVNLARNRYWYFFRRRRQDSLSLDCALSEDSAATFADLVADVVQDPAQ 150 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ E +V +E L R +TLR + SYEEIA + VGTV+SRI RARE Sbjct: 151 ETVAGEFSTLVDLCMEKLDARHREILTLRNVLNRSYEEIATTLGINVGTVKSRIARAREN 210 Query: 181 IDNKVQP 187 + + Sbjct: 211 LRTLLAE 217 >UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFY7_9BACT Length = 191 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 76/192 (39%), Positives = 107/192 (55%), Gaps = 10/192 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 + TD LV + ++G Q AFN LV + KV R S D DV Q A+IK ++ L Sbjct: 4 DDQTD-TLVFQAKEGSQTAFNQLVTLHYDKVYGQALRMTRSEEDAKDVAQLAWIKVWKKL 62 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK--EISNPE 119 SFRGDSAF +W+YRI TA + + + SS A EAE E+ I++P+ Sbjct: 63 SSFRGDSAFTSWVYRITTFTALDLIRKRN----SSRETATEAEYLENAANADASPIASPD 118 Query: 120 NL--MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 + + +EL+ + + LPE LR A+ LRE++GLSYEEIA + C GTV SR+F A Sbjct: 119 QITNLERKELQSRIDDAMTKLPEKLRTALQLREIEGLSYEEIAQQLQCKTGTVMSRLFNA 178 Query: 178 REAIDNKVQPLI 189 R++I + L Sbjct: 179 RKSIQKHLADLF 190 >UniRef50_B8I824 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Clostridium RepID=B8I824_CLOCE Length = 184 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 10/184 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 LTD LV + GD AF +V+RY+ V S+V + + +V DV QE FI+ YR+LD Sbjct: 2 ALTDAELVSQCVNGDSSAFEEIVIRYKRLVYSVVYKMISDKEEVHDVCQEVFIRLYRSLD 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 + + TW+ +I N + L + + + D ++ G EI PE + Sbjct: 62 KYNPEFKMSTWIVKITSNLCLDTLRKKKQDTVTLD---------DAIGVSSEIDTPEEAL 112 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + + Q++ + ++ LP+ ++ I L G+SYEE+ I++ P+ +++R++RAR + Sbjct: 113 IKHQRSQLIKKAVDELPDKYKVLIVLFHNRGMSYEEMTKILNEPMSIIKNRLYRARLMLK 172 Query: 183 NKVQ 186 K++ Sbjct: 173 EKLE 176 >UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus RepID=Q1IW21_DEIGD Length = 194 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 15/188 (7%) Query: 4 QLTDQVLVERVQK-G--DQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 +LTD LV G + AF +LV R+ +V + + V G DVVQE F+ YR Sbjct: 15 ELTDAQLVPLAAHPGPYREAAFEVLVRRHAPRVHRIAAGTVGPGAADDVVQEVFVSVYRN 74 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L SFRG + F TWL+RI +N + L A+ + + L NP Sbjct: 75 LASFRGQAQFTTWLHRITLNACQRALTARQH------------LSLDEAPELPAPHNPVQ 122 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 +LR+ + + LP + R A+TLREL GL Y EIA ++ +GTV+SR+ R R A Sbjct: 123 TGEQADLRERLAWAMRQLPPEQRDAVTLRELSGLDYAEIAEVLGVELGTVKSRLNRGRAA 182 Query: 181 IDNKVQPL 188 + + + Sbjct: 183 LRALLAGI 190 >UniRef50_C1ZG18 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZG18_PLALI Length = 211 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 4/186 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSF 64 +Q L+ER++ G+++AF + V RY + + + R + D + +QEAF+ A+R + F Sbjct: 19 DEQQLIERLRGGEREAFEMFVRRYCNPMYYVARRILRHDDDAREAMQEAFLSAFRKIHQF 78 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE---ISNPENL 121 S F TWL+RI VN A L + RR + + + ++ I + E L Sbjct: 79 DARSQFSTWLHRIVVNAALKKLQVRERREKRTIDAFLPTFTDDDHHRIEPRCPILSSEEL 138 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ELR+++ + I LPE R + LR+++GL EE A + V++R+ RAR+A+ Sbjct: 139 AQRNELRELLHQKINELPEIYRTVLLLRDIEGLDTEETAQSLQTTTDVVKTRLHRARQAL 198 Query: 182 DNKVQP 187 ++P Sbjct: 199 RTLLEP 204 >UniRef50_C6N7I6 RNA polymerase sigma E factor RpoE n=2 Tax=Legionella RepID=C6N7I6_9GAMM Length = 220 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 8/185 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +D+ LV Q+G++ A+NLL+ RY +K+ ++ ++ V D+VQE +K YR L F Sbjct: 43 SDEDLVNLAQQGNRNAYNLLLARYNNKIQQIIYFHINDQAYVNDLVQEVLLKVYRYLHYF 102 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + S F TWLYRI NT KN+ + R +VD ++ + + +PE +++S Sbjct: 103 KEKSQFSTWLYRITHNTIKNHYRSMSIRMGR-EVDFVDTQEHSTH------QSPEYVLIS 155 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E + + I L +DLR+ + DG +YE IA MDCP+GTVRSRIFRAR+ + Sbjct: 156 IEFGEQLELAISRLSDDLRICYGMHIFDGQTYENIAKKMDCPIGTVRSRIFRARKLLMAS 215 Query: 185 VQPLI 189 + + Sbjct: 216 IADFV 220 >UniRef50_Q97E49 Specialized sigma subunit of RNA polymerase n=1 Tax=Clostridium acetobutylicum RepID=Q97E49_CLOAB Length = 190 Score = 182 bits (464), Expect = 4e-45, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 2/182 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D+ +++R +K D+ +F+ L Y+ + +L Y + D D+VQE +IK ++ + +F Sbjct: 4 DKEILKRCKKYDRASFSQLFHLYEKYLYNLCYGYTQNTSDAMDLVQEIYIKVFKNIKNFD 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + F+ W+ +I+VNT N+ R S FE L E N E +++ Sbjct: 64 ENLPFHPWVRKISVNTCLNFKRD-NRGNVMSLNSKYYDSEFEEEDRLAEDYNMEQEVVNR 122 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 ++V +I+ L D RM I LR + LSY+EIA+++D P+GTV+++I+RA+ + + Sbjct: 123 INNEVVKESIKKLTYDYRMVIMLRYYEDLSYDEIASVLDMPIGTVKTKIYRAKNVLKKSL 182 Query: 186 QP 187 + Sbjct: 183 EK 184 >UniRef50_C8PSN5 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSN5_9SPIO Length = 219 Score = 182 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 11/188 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 +++ L D + + V G+ +AF +L +YQ +V L + + D D VQ+ +KAY Sbjct: 18 LNQALRDYEVCKAVLNGNTQAFAILAAQYQKRVYMLGLSFFDNTDDCEDFVQDVMLKAYS 77 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FR ++ F TWL RIA NTA N + + R +D IE NPE Sbjct: 78 ALGTFRAEAPFATWLMRIAYNTALNSVKKRNRYSSLADGTEIEYRG----------DNPE 127 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L+E + V + SLP++ R+ I L +SY +IAA+ + P+ T++S IFRA++ Sbjct: 128 EKHLNECIVLSVREAVNSLPDNYRICIDLYFFYDMSYTDIAAVTELPLNTIKSHIFRAKK 187 Query: 180 AIDNKVQP 187 + ++ Sbjct: 188 ILREYLKE 195 >UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISX0_ACIBL Length = 200 Score = 182 bits (463), Expect = 6e-45, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 6/183 (3%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR-GDS 68 V R GD A+ +V + ++ +L R+ S D D+ QE FIK YR L SF G + Sbjct: 11 VRRCVAGDTAAWEDIVRQTNRRIYNLCYRFSGSPDDAQDLTQEVFIKIYRTLGSFDSGKA 70 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN----PENLMLS 124 +F TW+ + N ++ + +DA + + +I++ P+ + S Sbjct: 71 SFVTWVTTVTRNLLVDHFRKGKYDRMTDSLDAPMGDEEDGLALGSQIADKGQTPDERLES 130 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +++V + ++ L +LR A+ LR+L + Y+EI+ I+ P GTV+SRI R R + Sbjct: 131 RETKELVHKALQKLSPELREAVILRDLQDMDYKEISQILKIPEGTVKSRINRGRTELARL 190 Query: 185 VQP 187 +Q Sbjct: 191 LQR 193 >UniRef50_D2Q537 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Actinomycetales RepID=D2Q537_9ACTO Length = 237 Score = 182 bits (462), Expect = 6e-45, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 11/190 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + + D L+ G+ F LV R++ ++ ++ R + + D +QEAFI A+R Sbjct: 25 DTMDDHELLRLHVAGNPDTFGYLVKRHRDRMWAVAIRTLGEPEEAADALQEAFISAFRRA 84 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 DSFRGD+ TWL+RI VN + + + R A E A ++ Sbjct: 85 DSFRGDAKVTTWLHRIVVNACLDRIRRRQVRA------ADPLPEDEDRAAELAGPAEDDP 138 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E R V ++ + D R A+ L +++G S EE AAI+ C GTV+SR R R Sbjct: 139 AEVRERRLDVLNALKQINSDQRSALVLVDMEGYSIEEAAAILGCAPGTVKSRCARGR--- 195 Query: 182 DNKVQPLIRR 191 ++ PL+R Sbjct: 196 -ARLLPLLRH 204 >UniRef50_D1CFG7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFG7_THET1 Length = 204 Score = 182 bits (462), Expect = 7e-45, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 7/170 (4%) Query: 29 YQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 Y + R + D D+VQE ++KA+R DSF+ + WL+RI NT N Sbjct: 22 YIDSLYRTALRLTNNPADAEDLVQETYLKAHRFRDSFKPGTNLRAWLFRILTNTFINDYR 81 Query: 88 AQGRRPPSSDVDAI-EAENFESGGALKEI-----SNPENLMLSEELRQIVFRTIESLPED 141 + R+P ++++ + E E++ +KE +PE +L+ + + V ++SLPE Sbjct: 82 KKSRQPQTTEMGELGEMEDYYLFRRVKEAGESLGEDPEQTVLNMFVDEEVREALDSLPEQ 141 Query: 142 LRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 R+ + L +++G SY+EIA ++ PVGTV SR+ R R+ + K+ R+ Sbjct: 142 YRLPVLLADVEGFSYKEIADVLGIPVGTVMSRLHRGRKQLQQKLWEYARQ 191 >UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F885_ACIC5 Length = 236 Score = 182 bits (462), Expect = 7e-45, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR-GDS 68 V+R GD A+ LV + +V +L R+ S D D+ Q+ F+K Y L SF Sbjct: 49 VQRCMDGDSGAWTELVQTHHRRVYALCYRFTGSSSDAEDLTQDVFLKVYGNLRSFDTERG 108 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA--IEAENFESGGALKEI-SNPENLMLSE 125 +F TW+ + N ++ ++ +S +D EA++ L + +P + + Sbjct: 109 SFQTWITTLTRNLLVDHFRRSKQQRATSSMDEGWDEADDLPLTQRLAQPGPDPHDRAVQR 168 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +L ++V + + +LR A+ LR+L L Y+EIA I+ P GTV+SRI R R + + Sbjct: 169 QLEKLVQEALVKISPELREAVILRDLQDLDYKEIAQILRVPEGTVKSRISRGRAELARVL 228 Query: 186 QP 187 + Sbjct: 229 ER 230 >UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=6 Tax=Myxococcales RepID=Q1D3E5_MYXXD Length = 223 Score = 182 bits (462), Expect = 8e-45, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 6/194 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 + + +D+ L+ Q GD +AF LV +++ V + + R+ DV+QE ++K R Sbjct: 15 LGPETSDERLMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVR 74 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI---- 115 + + + F TWLY IA N + + R SS + L E Sbjct: 75 SAGDYTPKAKFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAERDESRPLGEGLPDA 134 Query: 116 -SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 ++PE + LR ++ R + +LP++ R TLRE G+ +++IA + TV+SR+ Sbjct: 135 GASPERGAYNARLRPLLERALATLPDEQREVFTLREYSGIPFKDIAEVTGVSENTVKSRM 194 Query: 175 FRAREAIDNKVQPL 188 A + + ++ + Sbjct: 195 RYALDGLRRRLAEM 208 >UniRef50_D1C360 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C360_SPHTD Length = 204 Score = 181 bits (461), Expect = 8e-45, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 14/190 (7%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 M+++ ++ + R + ++A + + + R + D D+VQE +++A+R Sbjct: 1 MNQEQSE---IPRAKL-QEEALS-----HIDALYRTAYRMTGNAMDAEDLVQETYLRAFR 51 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEA----ENFESGGALKEI 115 +L FR + WL++I N N + RRP S+ +D +E + G Sbjct: 52 SLHQFRPGTNLRAWLFKILTNAFINDYRKRSRRPRSTSLDNVEDYYLYSHLIDSGIQPAS 111 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 + PE+ +L+ + V +ESLP++ R + L +++G SY EIA IM PVGTV SR+ Sbjct: 112 TRPEDEVLANIPDEAVIAALESLPDEFRQVVLLADVEGFSYREIADIMSTPVGTVMSRLH 171 Query: 176 RAREAIDNKV 185 RAR + + Sbjct: 172 RARRRLQGAI 181 >UniRef50_A5FKW0 RNA polymerase sigma factor n=4 Tax=Flavobacteriales RepID=A5FKW0_FLAJ1 Length = 195 Score = 181 bits (461), Expect = 9e-45, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 MS + DQ ++++ +G+ AF +LV RY+ + +L + V + + +V Q+ FIK Y Sbjct: 1 MS-TINDQHYIDKILQGETNAFAVLVDRYKDMIFTLALKMVKNREEAEEVAQDTFIKIYS 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +L+ F+GDS F TW+Y+IA NT + L + + +D S +K + N Sbjct: 60 SLNKFKGDSKFSTWIYKIAYNTCLDRLKKSKKEDLNISIDDF------SSHLIKTMDNAL 113 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + +E +Q + + + LP + +TL D + EEI IM+ + ++FR+R+ Sbjct: 114 STLEEKERKQTIQKCLNLLPNEENFLLTLFYFDDQNLEEIGKIMNISANNAKVKLFRSRQ 173 Query: 180 A----IDNKVQP 187 + +++P Sbjct: 174 KLAVILRQQLEP 185 >UniRef50_Q2BEM6 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BEM6_9BACI Length = 213 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 11/186 (5%) Query: 4 QLTDQV-LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + ++ +++V G+++A+ ++ +Y++ + + + R + D D+VQEAFIK Y L Sbjct: 25 HMEEEAFWIKQVLAGNKQAYGHIINKYKNPLYATILRMTKNPQDAQDLVQEAFIKIYNQL 84 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + AF +WLYR+AVN + + + ++++ A N +PE + Sbjct: 85 GKYDQKGAFSSWLYRVAVNHCMDEFRKKSSQIKQAEINEASAVN---------TKHPEVI 135 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +L +E + V + I +LPED R+ I LR + L YEEIA P+ VR+++ RA++ + Sbjct: 136 LLKKEKNRQVEKLISTLPEDERIIILLRYANELPYEEIAETTGMPLSMVRNKLHRAKKKM 195 Query: 182 DNKVQP 187 V+ Sbjct: 196 RETVKK 201 >UniRef50_A0LQ54 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LQ54_SYNFM Length = 187 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 7/185 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 ++ +D +V V GD +A+ +LV RYQ + +L+ R S D D+ QE FIKAY +L Sbjct: 2 DRDSDYQVVASVLAGDTEAYAVLVKRYQKPIYNLMYRMTGSCEDALDLAQETFIKAYASL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FR F+ WLY I +N ++N+L R ++ E+ + G L E+ Sbjct: 62 HRFREGGRFFPWLYSIGLNHSRNFLRRNKARQ------TLDVEDCDPGSGLDYPGQEEDR 115 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + V R ++ LP D R A+ LR LS EEIAA + + + R+ R E + Sbjct: 116 LCARLDSMGVRRALDRLPVDYREALMLRYHQELSMEEIAAALRISLSGAKMRVHRGLEKL 175 Query: 182 DNKVQ 186 ++ Sbjct: 176 RELLE 180 >UniRef50_A6TSA9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSA9_ALKMQ Length = 187 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 94/185 (50%), Gaps = 11/185 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 +++D+ L++ Q + + F+LL +YQ + L Y S D D++QE +IK Y+++ Sbjct: 7 EVSDEKLIKLCQDQNMEGFDLLYTKYQSYIYRLCYNYTHSKEDSLDLLQEVYIKIYQSIP 66 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F W+ +I +NT N+ A+ + ++ N E + Sbjct: 67 RFEKGHPLSPWIKKITINTCHNFARAKK----------PTPLPLDPTLSIPSADNVELAL 116 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + +++ +I LP +++ I LR ++ +SY+EI+ + P+GTV++ +FR R+ + Sbjct: 117 SYKSTEKLLKTSISQLPHEIKSVILLRHVEAMSYQEISQCLSIPIGTVKTHLFRGRKHLK 176 Query: 183 NKVQP 187 ++++ Sbjct: 177 DQLKK 181 >UniRef50_Q2IIH1 Sigma-24 (FecI-like) n=4 Tax=Anaeromyxobacter RepID=Q2IIH1_ANADE Length = 218 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 1/182 (0%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + +GD++AF+ LV ++ V +L R + D D QEAF +AY +L +F Sbjct: 30 EAAWTRSAARGDRQAFSRLVDLHKRTVFALCVRLLRDQDEAQDAAQEAFARAYASLAAFD 89 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 F WL RIA N + + + + ++DA + A + ++ + Sbjct: 90 PSQPFAPWLLRIARNHCLDVIRRRLPQAQRVELDAAPEDGAPRDLADPDAPRGDDALERR 149 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 EL + + + +LP + R + L ++ LSY+EIAA MD P+GTV + + RAR + + Sbjct: 150 ELARTLEAAVAALPANYREVVHLFHVEHLSYKEIAAAMDVPIGTVMTWLHRARARLKATL 209 Query: 186 QP 187 Sbjct: 210 DA 211 >UniRef50_D1C1C9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1C9_SPHTD Length = 224 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 3/182 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFR 65 D+ L+ ++GD AFN LV RY+ V + R + + DV Q+ F++A+ AL+ F Sbjct: 24 DEELIAAAREGDLAAFNALVARYERAVYGVALRLLREPEAAADVTQDTFVRAHAALEQFV 83 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G SA WL RIA N + + L + RRP S +DA E ++PE + Sbjct: 84 GGSA-RAWLLRIATNRSYDLLRYRRRRPAES-LDARPVEEEPVWAVETPPADPEAFATRQ 141 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 EL + + +L +D R+A+ L ++ G SY+EIA++ +GTV+SRI R R + + Sbjct: 142 ELSTRLEAALAALTDDQRVAVVLYDVQGYSYDEIASLTGATLGTVKSRIHRGRARLRELL 201 Query: 186 QP 187 + Sbjct: 202 RQ 203 >UniRef50_C0Z9P5 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9P5_BREBN Length = 186 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 DQ V++V GD AF LV +Y+++V SL+ R S D D Q AF+ AY++L + Sbjct: 3 EDQEWVKQVLGGDPHAFAHLVNKYKYRVCSLLVRMGNSPEDAEDFAQTAFVNAYKSLQQY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 F WL +IA+N ++ P ES A NPE+ L+ Sbjct: 63 DASRPFSAWLNKIAINCCLQAWRTAQKKNPIVPFQ-------ESMKAHTNYENPESFYLA 115 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E + +F + L R+ +TLR + LSY+EIA M PV TV+ ++RA++ + Sbjct: 116 REKQNEIFAVMGELASHYRIVLTLRYFEELSYQEIAETMQVPVTTVQVHLYRAKKKLREL 175 Query: 185 VQP 187 + Sbjct: 176 MGK 178 >UniRef50_B4WJK4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WJK4_9SYNE Length = 224 Score = 180 bits (459), Expect = 1e-44, Method: Composition-based stats. Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 6/188 (3%) Query: 4 QLTDQVLVERVQK---GDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 QL++ L+ R QK D+ AF LV RY + L+ D D+ QE +I+ Y+ Sbjct: 29 QLSNSELILRCQKLDSRDRTAFEELVARYHRYIDKLLFDLASDWLDRTDLAQEVWIRVYK 88 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN--FESGGALKEISN 117 ++ + F +WL RI N + L + R S +DA N + Sbjct: 89 SIHKLNDPTKFKSWLSRITTNLFYDELRKRKRFQRSVSLDAPRYLNNRHYEWELPSDQPT 148 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P + +L+ E R + + + LP+ R I LREL GLSYEEIA++ +GTV+SRI RA Sbjct: 149 PTDDVLTREFRDYLEQAMSELPQTFRETIALRELQGLSYEEIASMTGVSLGTVKSRIARA 208 Query: 178 REAIDNKV 185 R + K+ Sbjct: 209 RRKLQEKL 216 >UniRef50_A6LL38 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Thermotogaceae RepID=A6LL38_THEM4 Length = 203 Score = 180 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 95/182 (52%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 ++ ++ ++KGD+ A+ L + K+ S Y + DV D+VQE + ++ + F+ Sbjct: 18 NEKKFIKALKKGDEWAYRRLYRDFAPKIGSFAKTYFGTDDVDDIVQEVMFRVFKGIKKFK 77 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S+ TW+YRI +N Y ++ + + ++ + + SE Sbjct: 78 GNSSLSTWIYRITMNVCNTYYEKYKKKNEKVFSVETDDTEDIEVDIPDKETDVQKEVESE 137 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 L + + + +E LPE R+ I LR++D LSY+EIA I++ P GTV+SR+ AR+ + Sbjct: 138 ILYEKINKALEKLPERDRVLIKLRDIDELSYQEIADILNIPEGTVKSRLHNARKLFQKIL 197 Query: 186 QP 187 + Sbjct: 198 KE 199 >UniRef50_A6EDP4 Putative RNA polymerase sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EDP4_9SPHI Length = 194 Score = 180 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M++Q +D L+ V G+ + LV R+Q V +L R+ + D +V Q+ F+KAYR Sbjct: 1 MTQQQSDTDLINAVLAGNTDVYTELVKRHQRFVFTLAMRFTKNREDAEEVAQDCFVKAYR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +F+ +S F TWLY I TA +L + +D ++ ESG L++ S+ + Sbjct: 61 ALGTFQQNSKFSTWLYTITYTTAMTFLRRKK-------MDTTSIDDVESGIQLQDRSSTD 113 Query: 120 NLMLSEELRQ---IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +LS E + + I +LP D + ITL S EEI + V+ ++ R Sbjct: 114 VDLLSVERKSGHTWLNNAIAALPADDAVIITLFYKGEQSLEEIGTALHMSSNAVKVKLHR 173 Query: 177 AREAIDNKVQPLIR 190 AR + K+Q L++ Sbjct: 174 ARIRLKEKLQYLLK 187 >UniRef50_C0ZGW3 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGW3_BREBN Length = 189 Score = 180 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 9/181 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D +++R+ +GD +A+ L+ RYQH + + + V + D D+ QE F+KAY L +F Sbjct: 3 SDAEIIQRILQGDIEAYRDLIQRYQHMIYVFIYKMVNNRSDAEDLTQEVFVKAYEKLSTF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGDS F +WL+ +A N + ++L + E + +P+ +++ Sbjct: 63 RGDSQFSSWLHTLARNKSIDFLRRRKYH--------DSDEQLAYVPSNTRDESPQESLMT 114 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E R+ + L + R I LR +E+IA ++ T R R RAR+ + Sbjct: 115 KEQRREIQEAFALLSDSYREVIVLRCTHEYPFEKIATLLGIAESTARVRYLRARQELAKL 174 Query: 185 V 185 + Sbjct: 175 L 175 >UniRef50_A0LEX1 Transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEX1_SYNFM Length = 205 Score = 180 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 MS D LV +GD AF LV RYQ + + ++R + G D+ QE F++ YR Sbjct: 17 MSMDDPDLALVNAAGRGDVDAFESLVGRYQGPLLNFIARILGDRGAAEDLAQEVFLRVYR 76 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 A F + TW++RIA N A L + RR AE G Sbjct: 77 AAPRFEARTKVSTWVFRIAYNLAMTELDRRKRRRTL-------AEALHRNGEEASREALA 129 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + E ++ + ++ LP + R + LR LSY EIA I+ +G+V S +FRAR+ Sbjct: 130 DPGEDREFQEEIASALDGLPGNQRAVLLLRLHQDLSYREIAEILGTSLGSVESLLFRARK 189 Query: 180 AIDNKVQP 187 + ++ Sbjct: 190 TLRESLRR 197 >UniRef50_A5GDM9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GDM9_GEOUR Length = 202 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 5/187 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D LV + G+ +F LV ++Q ++ ++ R D +V Q+ F+ A+R +DSF Sbjct: 11 EDAALVASWRSGELSSFEALVRKHQKRMLNIAFRITGDYEDACEVTQDVFVAAFRGIDSF 70 Query: 65 RGDSAFYTWLYRIAVNTAKNYL--VAQGRRPPSSDVDAIEAENFESGGALKEISNPE--N 120 RG++ F TWL IAVN ++N L V RR + +D + S P Sbjct: 71 RGEARFSTWLTSIAVNLSRNRLQQVQAKRRNEAYSLDGPSVGEDCDVVPERPSSAPSALE 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +L + + I++L + R AI LR+L SY+E+ AI+ GTV+SR+FRARE Sbjct: 131 RLERLDLHEKLQGCIKALTAEFREAIVLRDLQDFSYDEMCAIIKVREGTVKSRLFRAREM 190 Query: 181 IDNKVQP 187 + + ++ Sbjct: 191 VKDCLKR 197 >UniRef50_B9XQJ1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XQJ1_9BACT Length = 183 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 15/183 (8%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 ++V + + ++GD +AF L+ YQ + +L R S D D+ Q+ FI+A+R + ++ Sbjct: 6 EEKVWIGKSRQGDHEAFEALIKCYQKMIHALTYRMTGSLTDGEDLAQDTFIQAFRQIHTY 65 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGDS F +WLYRI +N N+ +Q R+ + + E G L + P+ Sbjct: 66 RGDSKFSSWLYRIGINLCLNWRKSQQRQQKAHE---------EYGQNLDTETTPDGK--- 113 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 Q V + L R AI L DGL++ E A ++ C TV RIF AR + Sbjct: 114 --RAQQVQEALMKLRPKQRAAIVLTTYDGLNHAEAAQVLGCSETTVSWRIFAARTKLKKL 171 Query: 185 VQP 187 + Sbjct: 172 LSK 174 >UniRef50_Q01Q68 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q01Q68_SOLUE Length = 212 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 2/189 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + + LV + ++GD AF LV RY+ K+ L + D DV+QE+F+KAY L+ Sbjct: 15 IEESALVTQAREGDTAAFAELVRRYEGKIFRLAQHITQNREDAEDVLQESFMKAYEHLEQ 74 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-SNPENLM 122 F+GDS FYTW+ RIAVN A L + S + I+ + +PE Sbjct: 75 FKGDSKFYTWIVRIAVNQALMKLRRRKTDKSVSIDETIDTGEDTVVREIAAWGEDPEQSF 134 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 EEL I+ + IE L R LR+++ LS EE A + V V+SR+ RAR + Sbjct: 135 SREELGSILDKAIEGLEPLYRSVFVLRDIEELSTEETAEALGLSVPAVKSRLLRARLQLR 194 Query: 183 NKVQPLIRR 191 K+ +R Sbjct: 195 EKLTRFFKR 203 >UniRef50_Q5X4Y5 Sigma factor RpoE (Sigma 24) n=5 Tax=Legionella pneumophila RepID=Q5X4Y5_LEGPA Length = 187 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 8/184 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 L+D+ L+E QKG+ AF+ L RYQ K+ ++ Y +V D+ QE IK +R L Sbjct: 7 LSDESLIELAQKGNGLAFDKLFERYQGKIRQMIYFYTHDWTNVNDLTQEVLIKVFRHLPY 66 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F S F TWLY+I NT KNY ++++ + ++PE+ ++ Sbjct: 67 FNERSQFSTWLYKITQNTIKNYFR-------TNNLYTDSEMQYMDEQFSTPHNSPESDIM 119 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E + + + L E+LR+ L DG +Y++IA M CP+GTVRSRIFRAR+ + + Sbjct: 120 GLEFEKQIEAAMSCLSEELRLCYGLHIFDGQTYQDIAKEMHCPIGTVRSRIFRARKQLMD 179 Query: 184 KVQP 187 V Sbjct: 180 IVSE 183 >UniRef50_C1A5K6 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5K6_GEMAT Length = 186 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 13/183 (7%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +DQ ++ RV GD+ AF++L+ RY + S D D++Q +FIKAY L Sbjct: 13 SDQEVIARVMAGDRDAFSMLIGRYSDPLYRHALGMTGSPDVAEDILQTSFIKAYHHLGEV 72 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG F WL+RI N K++L R S D D + ++P+ + Sbjct: 73 RGR--FDAWLFRIVANGCKDWLKNIRRTHLSYDEDDQPSG----------YASPDEDLDR 120 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ELRQ + + L LR A ++ ++G SYEE+A ++ VG ++ R+ RAREA+ Sbjct: 121 TELRQDLDSALAQLAPSLREAFIMKHVEGRSYEEMADLLGTTVGALKMRVHRAREALQAL 180 Query: 185 VQP 187 ++ Sbjct: 181 LEE 183 >UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDB7_RHOM4 Length = 198 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 1/181 (0%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D+ V +G++ A+ L+ +Y+ + ++R V D+ D+VQE FIKA+ AL ++ Sbjct: 12 DRAFVAEALQGNEAAYQALMDKYRPALRRHIARIVRDPRDLDDLVQETFIKAFTALSTYS 71 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + AF TWLY+IA N A +YL + R S D E P+ ++ + Sbjct: 72 TEYAFSTWLYKIATNHAIDYLRRKKLRTLSLDEPIQTKEGTLERELADTTYFPDRHIVED 131 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + R ++ I +LPE R I +R SYEEIA ++ P+GTV++ IFRAR + + Sbjct: 132 QRRMLLQEAINALPEKYRRVIVMRHQQEKSYEEIAEELNLPLGTVKAHIFRARRLLYKYL 191 Query: 186 Q 186 + Sbjct: 192 R 192 >UniRef50_C1SKR1 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR1_9BACT Length = 191 Score = 179 bits (456), Expect = 4e-44, Method: Composition-based stats. Identities = 62/182 (34%), Positives = 113/182 (62%), Gaps = 5/182 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 + D ++E+V GD + F +L+++YQ ++ + + V + D+ QEA++K + L++ Sbjct: 1 MKDSAIIEKVLSGDAQQFEMLILKYQSRLFATILNVVKHRELAEDITQEAYMKGFDKLET 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + FY WL RIA+N A N+ + +R + + E FE + + +PE L++ Sbjct: 61 LKNREQFYPWLKRIALNLALNHF-ERAKRVMDVENEDDETSFFE---RIPDGESPEELVV 116 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EEL++ V +E+LP+ LR+ + LRE++ +SY+EIA +M+ P+GTVRSR+F AR+ I + Sbjct: 117 KEELKRYVRHFVEALPDKLRVVVVLREMEDMSYDEIADLMNIPIGTVRSRLFNARQIIKD 176 Query: 184 KV 185 ++ Sbjct: 177 RL 178 >UniRef50_Q7NFE2 Glr3584 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFE2_GLOVI Length = 187 Score = 179 bits (455), Expect = 5e-44, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 12/181 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 Q++D+ LV R + D +AF L RY KV L+ + + + D+ QE F+K ++AL Sbjct: 9 QVSDEQLVWRASRSDGQAFRELYRRYVSKVRGLLYQMMSDIESLDDLTQEVFVKVFKALP 68 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 FRGD+ F TWL+RIAVN ++ + RRP + +D + + E+ + Sbjct: 69 GFRGDAQFSTWLFRIAVNCCQDARRRRARRPMAVPIDNLPL-----------AARGEDPL 117 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + Q+V + + +L E+ R + L +L +EIA +++ PVGTV+SR+F AR + Sbjct: 118 GRLDREQLVSQALATLKEEHRDVVILHDLHDRPQDEIAKLLNVPVGTVKSRLFYARRQLR 177 Query: 183 N 183 Sbjct: 178 E 178 >UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTA8_9CORY Length = 268 Score = 178 bits (454), Expect = 6e-44, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 8/170 (4%) Query: 17 GDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLY 75 G+ ++ LV + V L R + D D+ QE F++ +R+L S++ + F WL+ Sbjct: 89 GEMPSWADLVAEHADGVYRLAYRLSGNKQDAEDLTQETFMRVFRSLKSYKPGA-FKGWLH 147 Query: 76 RIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTI 135 RI N + + + + ++A+ ++ P+ ++ L + R + Sbjct: 148 RITTNLFLDMVRHRS----AIRMEALNETAYDRYPGSD--PTPDEAYINSNLDPTLERAL 201 Query: 136 ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +L D R+A+ L +++GLSYEEIA + +GTVRSRI R R+ + + Sbjct: 202 FNLSPDYRVAVVLCDMEGLSYEEIAETLGVKMGTVRSRIHRGRKQLREYI 251 >UniRef50_A1ZQJ0 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQJ0_9SPHI Length = 205 Score = 178 bits (453), Expect = 8e-44, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 7/192 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 + + D++LV + + GD+KAFN LV + +++ + +Y D + Q FI Y+ L Sbjct: 2 QMVHDEMLVNKARNGDRKAFNHLVNLWNNRIYNFTYKYFNDHDLAMEATQRTFIAVYKNL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGA------LKEI 115 + F +WLYRIA N RR S + + E+ Sbjct: 62 QKLEQPARFRSWLYRIASNNCHEEERRNKRRWTVSLFKSAQKAGEEAPPWGKYEKDTNRF 121 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 +NP+ EL Q++ R ++ L E+ R+ + ++E +GL ++EIA + T +SR++ Sbjct: 122 ANPDQQYQKTELEQVLHRALKELSEEQRIVVIMKEYEGLKFKEIAEALAISENTAKSRMY 181 Query: 176 RAREAIDNKVQP 187 A+ + Sbjct: 182 YGLNALRKVLNK 193 >UniRef50_B9L046 Group3 RNA polymerase sigma factor n=2 Tax=Thermomicrobia (class) RepID=B9L046_THERP Length = 313 Score = 178 bits (453), Expect = 8e-44, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 4/179 (2%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSA 69 V R + GD AF LL +Y+ V + R V + + D+ QE FIKAYRAL D Sbjct: 133 VARAKAGDHDAFALLYQKYERSVYQFIYRMVGNAEEASDLTQECFIKAYRALPQTTDDLN 192 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 WL RIA N + A RR + ++++ + +PE +L E + Sbjct: 193 VGGWLRRIATNVCLD---ALRRRNRLRWLRLDHLASWQNSSLRSDAIDPERALLETETQD 249 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 V R ++ L R A+ LRE +G S EEIA I+ +S +FRARE + + Sbjct: 250 TVERVLQRLQPHYRAALILREYEGYSSEEIAQILGISRSAAKSLLFRAREEFRRLFREM 308 >UniRef50_D0LKU5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LKU5_HALO1 Length = 205 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 12/182 (6%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 T+ ++ ++G+++A L +Y+ +V LV+R V G+ +V Q+AF++ +R + FR Sbjct: 25 TEAAIIAGCRRGEKRAREALYHQYKRRVFGLVTRIVGPGEAEEVAQDAFVRIFRGIPKFR 84 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 GDSA TW+YR+AVN A + + R + D L E++ P + Sbjct: 85 GDSALGTWIYRLAVNAALTHATRRKRHFHAGDE------------VLAEVAAPAQVSRDP 132 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 L + R + LP R + L +++GLS+EE A I+ C VGT +S++ +AR + + Sbjct: 133 NLAARLERALAELPPGYRAIMVLHDIEGLSHEECANILGCRVGTSKSQLHKARARMRTLL 192 Query: 186 QP 187 P Sbjct: 193 GP 194 >UniRef50_Q1IQR2 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQR2_ACIBL Length = 223 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + +DQ ++ERV GD A+ LL+ RY ++ L+ + + DV+QEA+++A+R L Sbjct: 14 EWSDQEIIERVLAGDSPAYELLMRRYNQRLYRLIRSVLRDDAEAEDVMQEAYLRAFRNLS 73 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 + G S F TW+ IAVN A L R D + PE Sbjct: 74 QYEGRSTFSTWIGHIAVNEALARLSKASRLEYKDLNDPAATPDIADVA-----PTPEAQS 128 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 S E ++++ R I +LP R + + +++ ++ + AA+++ TVR R+ RAR + Sbjct: 129 ASGETQRLLERAIMTLPLRYRSVLMMHDVEDMTTADTAAMLELTEATVRVRLHRARALVR 188 Query: 183 NKVQPLI 189 K+ L+ Sbjct: 189 RKLFALV 195 >UniRef50_A9GBY9 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBY9_SORC5 Length = 206 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 6/192 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E++TD+ L+ R Q GD+ AF LV R++ + + + R V D+VQ+ F+K ++ Sbjct: 7 EEVTDEALMMRFQGGDRAAFAGLVRRHKTSIYNFILRQVRGPAIAEDLVQDVFVKIVQSA 66 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQG-RRPPSSDVDAIEAENFESGGALKEISNPEN 120 F+ ++ F TW + IA N ++L RR PS D + E + + G P+ Sbjct: 67 SDFKHEARFTTWAFAIARNVCIDHLRKMSLRRHPSLDQGSGEGGDGPTLGERTADPAPQA 126 Query: 121 LMLS----EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 + E+ Q + R +E LP + R LRE+ + +++IA I+ P TV+SR+ Sbjct: 127 AVDRVAIGTEMGQRIVRAVEGLPHEQREVFLLREIGHVPFKDIAHIVGVPENTVKSRMRY 186 Query: 177 AREAIDNKVQPL 188 A E + + Sbjct: 187 ALERLQEALSEY 198 >UniRef50_C7ICT2 RNA polymerase sigma factor n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICT2_9CLOT Length = 204 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 95/186 (51%), Gaps = 4/186 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 ++D +++ +K ++ L+ RY+ V ++ Y + D D+ QE FI ++++D Sbjct: 17 DVSDITILKEYKKNSRRGLELVYDRYKKYVYTIAFHYAGNKEDALDITQEVFIAVFKSMD 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F+ + W+ +I VN + N+L ++ + ++ E + ++ + Sbjct: 77 GFKEQFSMLPWIKKITVNKSLNFLRSKK---QNLSLNETNENGDELQSIISSNETTDDTV 133 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L ++ RQI+ ++I LPE RM + LR + + Y EIA +M P GTV++ I RAR+ I Sbjct: 134 LYKDTRQILQQSIGRLPEKERMVLVLRHVKQMKYSEIATVMKLPPGTVKTLIHRARKTIK 193 Query: 183 NKVQPL 188 + L Sbjct: 194 ENMVSL 199 >UniRef50_Q7MU87 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Porphyromonas gingivalis RepID=Q7MU87_PORGI Length = 174 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 18/190 (9%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 E+ +D + VQ GD ++F LV RY + +L+ R + D D++Q+ F+KA+R + Sbjct: 2 EKQSDSYYISAVQAGDTESFAPLVERYSDMLYALLCRLLQDEEDAADLLQDTFVKAFRHI 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F G S+F TW+YRIA N A ++L R E + +PE Sbjct: 62 SRFDGRSSFSTWIYRIAYNEAIDHLR---RHKAYVTDRVEELPDVPDEDLEPSGEDPE-- 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++ + ++SLP + + + D LS +IA + V+ ++ R + Sbjct: 117 --------LLQQALDSLPAADKALLLMFYSDDLSVRDIAEVTGMSESNVKVKLHR----L 164 Query: 182 DNKVQPLIRR 191 K+ ++R+ Sbjct: 165 RTKLYKMMRK 174 >UniRef50_Q47E65 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Dechloromonas aromatica RCB RepID=Q47E65_DECAR Length = 226 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 4/186 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + T+ L +V GD AF L+ R+ + + + D ++VQEA++ AYRAL Sbjct: 11 QHDTELELARQVAAGDSDAFRTLMRRHNQTLYRTARAVLRNDADAEEIVQEAWLLAYRAL 70 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FRG++ TWL RI VN A L + + + + AEN PE+ Sbjct: 71 HGFRGEAKLSTWLIRIVVNLA---LRRRQGQMRDTTIRVDSAENEVEDMHPSPTETPESN 127 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ELR+++ I+ LP+ R LR ++ L EE A+ + P TVR+R FRAR + Sbjct: 128 AANGELRRLLESHIDRLPDMYREVFILRGVEELDVEETASALGLPEATVRTRFFRARHQL 187 Query: 182 DNKVQP 187 + Sbjct: 188 RETLAQ 193 >UniRef50_A5UX09 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Roseiflexus RepID=A5UX09_ROSS1 Length = 201 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 7/188 (3%) Query: 5 LTDQ-VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + D+ L+ +++ D +AF +Y ++ L V + D + +Q FI A A+D Sbjct: 1 MNDESALIAGLRQRDPQAFATFFEQYADRIYRLAYGIVGNEADAEEALQSTFISALEAID 60 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-PENL 121 F + TWLYRIA N A L RRP S D E AL + S PE+ Sbjct: 61 RFEQHARLGTWLYRIAYNHALMILRR--RRPEESLPD--EDGPLPMPSALTDWSTLPEDR 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +LS E ++I+ I LP LR A R+++G S E A I+ G ++ R+ RAR A+ Sbjct: 117 LLSSEAQEILRNAIAELPITLRAAFICRDIEGFSTAECAQIIGVSEGALKVRLHRARLAL 176 Query: 182 DNKVQPLI 189 +V Sbjct: 177 RERVSEYF 184 >UniRef50_Q127J2 Sigma-24 (FecI-like) n=6 Tax=Burkholderiales RepID=Q127J2_POLSJ Length = 239 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 5/189 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 S+ +D LV G+ AF ++ RY + + S D D +QEA+++A+RA Sbjct: 12 SDVSSDAELVSLSIAGNDLAFAQIMRRYNRLLFRTARSILKSEDDTQDALQEAYLRAWRA 71 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQG----RRPPSSDVDAIEAENFESGGALKEIS 116 L +FR ++ TWL RI N A L G R P S + E E Sbjct: 72 LATFRAEARLSTWLVRIVANEALGRLRRNGAQTARVVPLSASVDADDETPEMQMQANPND 131 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 PE ++ ++RQ + I++LP+ R LR ++ +S EE+A ++ P TVR+R FR Sbjct: 132 QPEPSVMRAQIRQQIEARIDTLPDAFRTVFMLRGVEEMSVEEVALVLGIPEATVRTRFFR 191 Query: 177 AREAIDNKV 185 AR + + Sbjct: 192 ARSMLREGL 200 >UniRef50_D2QGU1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGU1_9SPHI Length = 196 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 110/192 (57%), Gaps = 6/192 (3%) Query: 5 LTD----QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 +TD VL+E +++GDQ+AF + R + +V +L YV + D ++ Q+ +++ +R Sbjct: 1 MTDTNDLAVLLEAIRQGDQEAFRQVYERTKTRVFNLALGYVRNREDAEEITQDVYVELFR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENF-ESGGALKEISNP 118 ++ SF G+++ TWLYRIAVN + ++L Q R+ + + ++ N E+ + S+P Sbjct: 61 SVASFNGNASGTTWLYRIAVNKSLDFLKYQKRQKRFAFLTSLFDSNTGETLYQPTDFSHP 120 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + ++E I+F+ I+ L E + A L +++GL+ E AAIM VG V S + RA Sbjct: 121 GVTLENKEQAAILFKAIDRLSEKQKTAYILTKVEGLTNIETAAIMAISVGAVESLLQRAT 180 Query: 179 EAIDNKVQPLIR 190 + + ++ + + Sbjct: 181 DNLKKQLAGVYK 192 >UniRef50_B3EM30 RNA polymerase sigma factor n=8 Tax=Chlorobiaceae RepID=B3EM30_CHLPB Length = 212 Score = 177 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 3/173 (1%) Query: 22 FNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 F+ +V +Q V + R+V D D+ QE FI+AYR+L++FR +S TWLYRIAV Sbjct: 39 FSTIVAEHQDMVLNTCFRFVLNREDAEDIAQEVFIEAYRSLENFRKESKLSTWLYRIAVT 98 Query: 81 TAKNYLVAQGRRPPSSDVDAI--EAENFESGGALKEISNPENLMLSEELRQIVFRTIESL 138 + ++L + R+ S + + + E + PE ++ E +I+ + SL Sbjct: 99 KSLDHLRKKKRKKRFSSLKRVIGLHDPTEELALPSSTATPEEVLSGNERTEILQDALSSL 158 Query: 139 PEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 P++ + A L + DG S +EIA IM V V S + RA++++ NK++ ++ Sbjct: 159 PDNQKTAFLLSKYDGYSNQEIADIMQTTVSAVESLVHRAKKSLQNKLEKHYKK 211 >UniRef50_Q73K99 RNA polymerase sigma-24 factor, putative n=1 Tax=Treponema denticola RepID=Q73K99_TREDE Length = 213 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 11/185 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E + D++L + V G+ +AF+L+ +YQ +V SL + + D D VQ+ +K + AL Sbjct: 14 EAVQDRLLCKAVLAGNTEAFSLIAAKYQKRVYSLGMSFFKNHDDSEDFVQDIMLKTFSAL 73 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FRG+S+F TWL RIA N+A N + +R S D E + + PE Sbjct: 74 PKFRGESSFSTWLMRIAYNSAINSVKR--KREFVSAFDDFEIKTNDL--------TPEER 123 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++ + R + LPE R+ I L + Y +I +I PV T++S IFR+++ + Sbjct: 124 QIQNCVKNAIRRAVNDLPEKYRICIDLYFFYDMPYADIESITGIPVNTIKSHIFRSKKIL 183 Query: 182 DNKVQ 186 +++ Sbjct: 184 KTELE 188 >UniRef50_A4XDI9 Sigma-70 region 2 domain protein n=16 Tax=Actinomycetales RepID=A4XDI9_SALTO Length = 244 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 6/173 (3%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 +E +D L+ GD+ AF L+ R+Q ++ ++ R + + D +Q+A + A+RA Sbjct: 19 TEPASDLDLLRAHVAGDRDAFAELLHRHQDRLWAVALRTLGDREEAADALQDALLSAHRA 78 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 FRGDSA TWL+RI VN + + + P D + +GGA P+ Sbjct: 79 AGRFRGDSAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVHDVAGATGGAEPAAPAPD- 137 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSR 173 + +V + +LP + R A+ L ++ G E+A I+D GTV+SR Sbjct: 138 ----HDTALVVREALAALPVEQRAALILVDVQGYPVAEVARILDVAEGTVKSR 186 >UniRef50_Q1IS06 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=Q1IS06_ACIBL Length = 198 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 3/190 (1%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 EQL+D ++ RV +GD AF+ LV +++ + S + R + ++ QE F++ YR+ Sbjct: 9 EQLSDAEVMLRVAQGDDAAFDYLVDKFRRPIISFMYRTTHNQATAEELAQEVFLRVYRSR 68 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLV--AQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +S+ + F TWLYRIA N A N R +D + E+ + E Sbjct: 69 ESYEASAKFTTWLYRIATNLAVNNARDTKHERAEAQVSLDEPDEESGSTMDVADSRPTVE 128 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 +L E + + +E LPE RMA+ + + + Y+EIAA++ +S +FRA E Sbjct: 129 QEILRNERMTAIRKVVEGLPERQRMAVLMHKYQNMDYKEIAAVLKLSESATKSLLFRAYE 188 Query: 180 AIDNKVQPLI 189 ++ ++ + Sbjct: 189 SLRESLKQYL 198 >UniRef50_A4CQ62 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CQ62_9FLAO Length = 194 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 7/188 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M++QL D+ L+ RV G+ +A+ +LV RY V +L R + + + Q+ F+KAY+ Sbjct: 1 MNQQLADRDLIARVLDGEDRAYEVLVDRYSQMVFTLAVRMLRDREVAEETAQDIFVKAYQ 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +L +RG + F TWLY IA + + + R + + G L ++ + Sbjct: 61 SLSGYRGSARFSTWLYTIAYHRILDVAAREKRHR------SYRTDELPEGRPLCDLEDTW 114 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + ++ E R ++ +E LPED R+ I+L L S EIAAI GTV+ R+FRARE Sbjct: 115 SQLMEGERRDLILMALEELPEDDRLLISLFYLQEQSLREIAAITGIRAGTVKVRLFRARE 174 Query: 180 AIDNKVQP 187 + + + Sbjct: 175 RLRDLISA 182 >UniRef50_C5D220 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Comamonadaceae RepID=C5D220_VARPS Length = 241 Score = 176 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 4/186 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALD 62 Q +D+ L R +GD AF ++ R+ + + + D +Q+A+++A+RA+ Sbjct: 17 QSSDRELAARAAQGDAPAFECIMRRHNQLLFRTARSILKSDEETEDALQDAYLRAWRAIG 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA---IEAENFESGGALKEISNPE 119 SFR D+ TWL RI +N A L +G + D A + + E A PE Sbjct: 77 SFRDDAQLSTWLVRIVINEALGRLRRRGAQVIPLDGAAAPGFDEDEPEWAAADDPDKQPE 136 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + EELR+++ R I+ LP+ R LR ++ +S EE AA + P TVR+R FRAR Sbjct: 137 RHAMREELRRLMERRIDRLPDAYRTVFMLRAVEEMSVEETAAALALPEATVRTRFFRARS 196 Query: 180 AIDNKV 185 + + Sbjct: 197 LLREGL 202 >UniRef50_Q5YXA9 Putative sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YXA9_NOCFA Length = 192 Score = 175 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 10/187 (5%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S + LVER + GD +A+ LV+RYQ+++ L R + D D VQE F+ A+R Sbjct: 13 STTPDEVTLVERAKDGDVRAYEQLVLRYQNQMFRLALRMLGDRADAEDAVQEVFLGAWRR 72 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L + +AF WLYR+ N N + A R P++DVD AE+ + + P++ Sbjct: 73 LSQLQDSAAFVGWLYRMTTNRCLNVIRA---RRPTADVDPDTAESPRTD------TRPDH 123 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + + ++ L + R LRE+DGLSYEEIA I++ VR RI RAR Sbjct: 124 AAQVNSQLAALNQALQRLTPEQRACWLLREVDGLSYEEIATIVETNTTAVRGRIARARAQ 183 Query: 181 IDNKVQP 187 + ++P Sbjct: 184 LAEVMKP 190 >UniRef50_C6CYB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Bacillales RepID=C6CYB2_PAESJ Length = 182 Score = 175 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 11/182 (6%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 L+ Q GD+ A L+ + V + + D D QEA I+ Y + S+ + Sbjct: 6 LIRAAQSGDRDALITLLREIETHVYRTAYYILNNEQDAMDAAQEALIRIYTKIGSYEEKA 65 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 F TW+ RI N + R P+ +D E +E N E+ ++S Sbjct: 66 QFKTWIQRIVTNICIDKFR---RSKPTVSIDEHEM-------VFREKQNVEDEVMSAYAV 115 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 Q + + I+ LPE R + LR L SY EIA +D P+ TV+S +FRAR+ + + Sbjct: 116 QDIRKAIDKLPEHHRAVVVLRYLQDFSYNEIADSLDLPLNTVKSYLFRARQQLQTLLHDY 175 Query: 189 IR 190 + Sbjct: 176 QK 177 >UniRef50_B0P2V0 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1 RepID=B0P2V0_9CLOT Length = 505 Score = 175 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 7/195 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M+E + L+ KGD ++F+ L K + +Y+ DV+QEA+IKA+ Sbjct: 1 MNEMI---QLLNGTLKGDTRSFDRLYELTHQKAYYVALKYMKDEHQAEDVLQEAYIKAFN 57 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-- 117 L++ + + F WL++I TA + + R+ S E+ ++ Sbjct: 58 NLNTLQNGNKFEPWLHKIVYTTAMDVYRKRKRQAERSINFTDYEGESETTVEFEDDREEF 117 Query: 118 -PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 PE + +E ++ V ++ L RMA+ L + S +EIA +M+C +GTV+SR+ + Sbjct: 118 KPEEQIDYKETQKAVLGFMDELSSPQRMAMMLFYYEQYSLKEIADVMECSIGTVKSRLNK 177 Query: 177 AREAIDNKVQPLIRR 191 A++ + V ++ Sbjct: 178 AKQLMRGMVDGYEKK 192 >UniRef50_D2QRT0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRT0_9SPHI Length = 246 Score = 175 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 1/162 (0%) Query: 29 YQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 + + + R D D+VQ+ ++KA+R + SF + WL+RI N+ N Sbjct: 74 HIDSMYNFAFRLTTDEDDANDLVQDTYLKAFRFISSFEQGTNAKAWLFRILKNSFINDYR 133 Query: 88 AQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAIT 147 + + P D +E + + +S+ + V + SLP D R I Sbjct: 134 KKSKEPAKVDYQDVETTYNSEDAESEHTVDLRAESVSDLIGDEVATALNSLPVDFRTVII 193 Query: 148 LRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 L +++G +YEE+A I+D P+GTVRSR+ RAR + K++ Sbjct: 194 LCDIEGFTYEEMAKILDIPIGTVRSRLHRARNLLKEKLRDYA 235 >UniRef50_C0Z4C2 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C2_BREBN Length = 185 Score = 175 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 98/181 (54%), Gaps = 10/181 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+V++ RV +G++ A++ ++ RY KV+S++ + + D D+VQE FIK Y L + Sbjct: 3 EDRVIIGRVLQGNKDAYSEIIARYHGKVSSILRKMLGHTPDAQDIVQEIFIKTYYHLPEY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + + F WLYRIA N + L + R+ S + IE + PE L+ Sbjct: 63 KANYDFSAWLYRIAANHCLDELRKRKRKLTLSSNEEIEP---------VDSHTPEVAFLN 113 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E ++++ + + S+ E R+ + +R + LS EEI+ + P TVR+R+ R ++ + Sbjct: 114 KEGQRLLRQRMMSVEEKYRIVLEMRYFESLSCEEISHRLSIPSSTVRTRLSRGKDKLREA 173 Query: 185 V 185 + Sbjct: 174 I 174 >UniRef50_B8GD43 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Chloroflexi (class) RepID=B8GD43_CHLAD Length = 203 Score = 175 bits (446), Expect = 6e-43, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 4/186 (2%) Query: 5 LTDQV--LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEA-FIKAYRAL 61 + D+ L+ Q GD AFN LV Y+ ++ +L R + D + FI A+R L Sbjct: 1 MADEEQRLIRSAQTGDLDAFNQLVRLYETRIYNLCYRMLGDADAAADATQDAFIAAFRNL 60 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 SFRG + F WL RIA N + L A+ RRP S + E G + ++ Sbjct: 61 RSFRGGT-FKAWLLRIATNACYDVLRARKRRPAVSLEREHDEEERHRGELPDPGESLDDT 119 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 M+ +EL + R + LP+D R+ I L ++ GL+YEEIA + +GTV+SR+ RAR + Sbjct: 120 MVRQELGAAIQRALAELPDDQRIVIILSDIQGLAYEEIARVTGVQLGTVKSRLSRARAKL 179 Query: 182 DNKVQP 187 + ++ Sbjct: 180 RDILRA 185 >UniRef50_C0ZJR5 RNA polymerase ECF-type sigma factor n=2 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJR5_BREBN Length = 188 Score = 175 bits (445), Expect = 7e-43, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 11/185 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+ L+E++Q G+ + ++ ++ RY K+ + + + + + D D+ Q+ F K + L + Sbjct: 3 DDRELIEQIQAGNHQLYSQIIDRYNGKIVTYLYKMIGNMPDAQDLAQDVFTKTFYLLKDY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 R + F +WLYRIA N + + + R ++ V+ + + PE +L Sbjct: 63 RPEHKFSSWLYRIASNHCLDEIRRRKRTEQTAIVEE----------QIVDPETPETALLK 112 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E + +I L E+ R L L LSY EI+ + V+ R+FRAR+ + Sbjct: 113 KERDAQLEHSIMLLDEEYREVFVLHYLQRLSYREISERLSLTESAVQMRLFRARKEMKKS 172 Query: 185 VQPLI 189 + + Sbjct: 173 LTKTM 177 >UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizobiaceae RepID=A4YXH9_BRASO Length = 234 Score = 175 bits (445), Expect = 8e-43, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 13/187 (6%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D L++R+ GD+ AF LLV R+ + ++ R V S D DVVQ+ +K + + Sbjct: 50 EDSELLDRLATGDEVAFRLLVERHIDRAYAIALRIVGSAADAEDVVQDTMLKVWTHRGRW 109 Query: 65 R-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + G + F TWLYR+ N + R+P + +VD + A+ ++ Sbjct: 110 QHGRAKFSTWLYRVVSNRCIDL----RRKPRTENVDVVPEVPDGKPDAVS-------VIE 158 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ++ ++ ++ LPE R+A+ L + +S EIA +M+ V V S + R R+ + Sbjct: 159 RAQMSDLLESAMQRLPEQQRVAVILSYHENMSNGEIAEVMETTVTAVESLLKRGRQQLRE 218 Query: 184 KVQPLIR 190 ++ R Sbjct: 219 MLRRHER 225 >UniRef50_UPI00016C5256 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5256 Length = 232 Score = 175 bits (445), Expect = 8e-43, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 6/182 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +D+ L+ R++ G++ F +LV RY+ ++ + RY+ D DV Q F++ Y L + Sbjct: 20 SDEQLLARLRAGERDCFGVLVRRYERELFGYLRRYLGDDDLADDVFQNTFVQVYTKLGQY 79 Query: 65 RGDSAFYTWLYRIAVNTAKNYLV-----AQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 D WLY IA N A + L A R + D P Sbjct: 80 EPDRPVRPWLYAIATNQAIDALRRRNRRADQRADVVTTADEDGQPRPLFELLPAAGDEPP 139 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 E R++V ++ LPE LR + L GL Y ++A + PVGTV+SR+ A Sbjct: 140 AAADRAEQRELVRAAVDRLPELLRQVVLLAYFQGLKYRDVADALGIPVGTVKSRLHAALA 199 Query: 180 AI 181 + Sbjct: 200 KL 201 >UniRef50_C8XA65 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Actinomycetales RepID=C8XA65_NAKMY Length = 208 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 2/188 (1%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 + + D VLV R Q GD +AF LV RYQ + + R + D DV Q AFI A+R Sbjct: 20 VKPDVDDAVLVLRAQDGDPRAFEQLVRRYQQVMFGVAVRILGDRDEAEDVTQNAFIAAWR 79 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 L FR D+ F TW+YRI N A N Q RRP +D + +EA + + ++PE Sbjct: 80 RLPEFRADAKFSTWMYRIVTNQALNQARGQSRRPRPADRETLEAASGSWVSTTVD-ADPE 138 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L V R + +LP+ LR+ LRE+ SY+E+A I + + T R RIFRAR+ Sbjct: 139 RHAQRAALLAAVRRALAALPDQLRVCWLLREVHERSYQEVADITEVSLDTARGRIFRARQ 198 Query: 180 AIDNKVQP 187 + ++ Sbjct: 199 RLAEEMSA 206 >UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus coagulans 36D1 RepID=C1P827_BACCO Length = 177 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 12/178 (6%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGD 67 L+ + + GD AF +LV R++ +V + D+ QEAF+KA+ ALD Sbjct: 8 QLIRQAKAGDTDAFAVLVARFKGEVFRHAYAMTGDRMEAEDIAQEAFVKAWYALDKLEHA 67 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 AF +W+ +I + + L ++ + ++ + + P + + + L Sbjct: 68 YAFASWMSKIVSHLCYDRLKKMRKKV-----------DLQAEIEEEPLRRPTSNIDNANL 116 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 R + +E L + R AI LR++ G SYEEIA I++ P+GTV+SRI AR + ++ Sbjct: 117 RFDIRSAMEKLSPEHRAAIVLRDIQGYSYEEIADILNIPLGTVKSRINTARNILKKEL 174 >UniRef50_Q82IU5 RNA polymerase sigma factor n=3 Tax=Streptomyces RepID=Q82IU5_STRAW Length = 227 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 8/182 (4%) Query: 12 ERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAF 70 ER + ++ A L ++ S R + D D+VQE + KAY + FR + Sbjct: 31 ERSARFERDALEFL-----DQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNL 85 Query: 71 YTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE--ISNPENLMLSEELR 128 WLYRI NT N + R P S + IE + + + E+ L Sbjct: 86 KAWLYRILTNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPD 145 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 V ++++PE+ R+A+ L +++G +Y+EIA IM P+GTV SR+ R R + ++ Sbjct: 146 SDVKSALQAIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDY 205 Query: 189 IR 190 R Sbjct: 206 AR 207 >UniRef50_Q1IUC0 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUC0_ACIBL Length = 222 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 2/186 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + ++ RV G+++ F+ L+ Y+ + + + + DVVQE+ +KAYRAL SFR Sbjct: 18 ESAMIGRVLAGERELFHELIRPYEKSLYFSAFSLLRNAEEAEDVVQESLMKAYRALHSFR 77 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLS 124 +S F TWL I +N A+ L + P +S D E+F + Sbjct: 78 SESKFSTWLASIVLNEARGRLRHERVIPFTSIDESPDPDEDFTPAVIADWREVATETLER 137 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E+R+++ R I LP R LR++ LS E A + G V+ R+ RAR + Sbjct: 138 KEIREMIRRAIRELPNIYREVFVLRDVQELSIAESAKALGIAEGLVKVRLLRARLMMQKF 197 Query: 185 VQPLIR 190 + P+++ Sbjct: 198 LAPMLQ 203 >UniRef50_C6XIM9 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIM9_HIRBI Length = 198 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRY-VPSGDVPDVVQEAFIKAYRAL 61 E ++D +LVE+V GD++A ++LV R+ +V ++ R V + DV Q+ F+K +++ Sbjct: 4 ESISDDILVEKVGGGDRQAASVLVRRHSQRVLNIARRMMVNEAEAEDVTQDVFLKVWKSA 63 Query: 62 DSFR-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + G + F TWL+R+ VNT + L R+P +VD + E P Sbjct: 64 AKWESGKAKFTTWLHRVTVNTCLDRL----RKPKMGNVDTVPE-------VADESETPAQ 112 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +E +++ R +E LP+ R A++L + +S E A +M+ V + S + R R Sbjct: 113 RLEAESRSELLKRAMEQLPDRQRAALSLCYFEEISNIEAAEVMEVSVDALESLLSRGRRK 172 Query: 181 IDNKVQ 186 + +Q Sbjct: 173 LKELLQ 178 >UniRef50_Q1AVA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVA8_RUBXD Length = 166 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 12/176 (6%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 + R + GD+KAF+ LV R+Q V + R + D D VQEAF++ + L SF G S+ Sbjct: 1 MARARSGDRKAFSELVRRHQTAVYRVCYRVLGDPEDARDAVQEAFVRCFTKLGSFEGRSS 60 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F TW+ R+A+N + N A+ E + S PE+ +L +E + Sbjct: 61 FKTWMLRLAINVSLNERKARA-----------RPLPPELREPPADPSGPEDDLLRKEAAE 109 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 V R + L + R A+ LR+L+G+S+ E+A ++ P T RS +R R+ + + V Sbjct: 110 RVHRALRLLQPNHRAAVVLRDLEGMSHAEVAEVLGVPEATARSWAYRGRQRLKDLV 165 >UniRef50_Q01NU7 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NU7_SOLUE Length = 188 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 9/189 (4%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + D L+ + KG +++NLLV R++ ++ + + R + D D+ Q+ F+KAY+ L Sbjct: 5 AVEDTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAYQNLR 64 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 + F WLYRIA N A + R P +DVD +E E E G + S + Sbjct: 65 KLDDSARFAPWLYRIAHNEAYSMFRK---RRPETDVDELEPEATEIGITVGGSS-----V 116 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 EL V ++ L D R A+ L+ G +EE+A I+ CPV TV+SR++ A E + Sbjct: 117 FPVELSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCPVSTVKSRLYTALELLK 176 Query: 183 NKVQPLIRR 191 ++ P+ R Sbjct: 177 AELAPVKAR 185 >UniRef50_A0LD14 RNA polymerase sigma factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD14_MAGSM Length = 210 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 7/182 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D +++ G +A+ L+V R Q +V V R++ S D D+ QE F++AYR L F+ Sbjct: 15 DAAHLKQALNGHPEAYALVVRRLQVRVYHFVLRHIHSPEDAEDLTQETFLEAYRNLSRFQ 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S F TWL IA N A+N+ R P D + E + P + Sbjct: 75 GNSLFSTWLLGIAHNMARNF----RGRAPHYRYDITDDSVLEYTS--DDRPTPHDYADEA 128 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + +++ R +E LPE+ R A+TL L+ LSYEE A + D + +++R+FRAR+ + + Sbjct: 129 DRMKLLKRAMEQLPEEQREALTLISLEELSYEEAAVVADISLSALKTRVFRARKHLRELL 188 Query: 186 QP 187 Sbjct: 189 HK 190 >UniRef50_Q3B236 Sigma-24 (FecI-like) n=3 Tax=Chlorobiaceae RepID=Q3B236_PELLD Length = 180 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 19 QKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRI 77 ++ +V +Q V + R+V D D+ Q+ FI+ +R+LD FR DS TW+YRI Sbjct: 5 EEQLRDIVEEHQEMVLNTCYRFVFNREDAEDIAQDVFIEVHRSLDRFREDSKLSTWIYRI 64 Query: 78 AVNTAKNYLVAQGRRPPSSDV-DAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIE 136 AV + ++L R+ S + I AE+ A NPE + +E Q++ +E Sbjct: 65 AVTKSLDHLRRLKRKKRFSSLKRMIGAEDPAINIAAPSRDNPEEALEDKERIQVLQVALE 124 Query: 137 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 SLP+ + A L + DG S +EIA IM+ V V S + RA++ + ++ RR Sbjct: 125 SLPDSQKTAFLLSKQDGYSNQEIADIMETSVSAVESLVHRAKKKLQELLEDYYRR 179 >UniRef50_A4CGT5 RNA polymerase sigma-70 factor n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CGT5_9FLAO Length = 236 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 5/180 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFR 65 D ++E V GD++ F +L+ R+ + + Y+ D+ D +QEA+IKAYR L F Sbjct: 26 DPWIIEAVLGGDKELFEVLMRRHNELMYRTIRSYLSREEDIEDCMQEAYIKAYRKLRQFN 85 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 +S F TWL RI +N A + + EA K I NPE + + Sbjct: 86 NESQFSTWLIRIGINEALMRIRKGKQMLTVEINQDAEAPQIPD----KSIMNPERITMHR 141 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E + I++LP ++ L+E++GL +EI+ +D V+ R+ RAR + + Sbjct: 142 ESLAYIEHAIDALPRKYKIVYMLKEVEGLEIKEISKSLDLSNSNVKVRLHRARNMMKEYL 201 >UniRef50_D1CIE7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIE7_THET1 Length = 186 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E L + LV + GD++AF+ LV YQ V L R + + D QE F++AY L Sbjct: 9 ELLAEMELVRAARDGDKEAFSALVRLYQQDVYRLCYRVLGNHHNAEDASQEVFLRAYDRL 68 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + F +WL RIAVN N + RR P ++++ + +PE Sbjct: 69 KQLESNDKFRSWLMRIAVNICLNE---RRRRHPITEIEE---------WHHPDTQDPETN 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L E Q+V R I+ LP + R+A+ L++L+G+ Y +IA ++ GT R ++R R+ + Sbjct: 117 TLRSERLQLVERAIQELPRNHRIALVLKDLEGVDYAQIADYLEVQEGTARVWVYRGRQKL 176 Query: 182 DNKVQP 187 ++ Sbjct: 177 KEIIER 182 >UniRef50_Q1AXP8 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXP8_RUBXD Length = 202 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 12/184 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 +L D+ LV R GD +++ LV RY+ VASL+ Y V D+VQE F++AY L+ Sbjct: 26 ELEDKELVARTLAGDMRSYEELVRRYERLVASLLYPYARREISVEDLVQETFLRAYDRLE 85 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +F + F TWL IA N + L + E F E PE Sbjct: 86 TFNPEYRFKTWLLAIANNLGVDTLRRRR-----------EVVEFNHEVHAGETGGPEAAA 134 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 LS E + + + SLPE + + LR + +SY EIA +M V V+SR+FRAR + Sbjct: 135 LSAERAESLREAVLSLPEQYSVPLMLRYGEEMSYAEIAEVMGLSVPAVKSRLFRARNMLA 194 Query: 183 NKVQ 186 ++ Sbjct: 195 GLLE 198 >UniRef50_B8FW34 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Desulfitobacterium hafniense RepID=B8FW34_DESHD Length = 182 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 11/183 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 + D L+++V KG + + LLV RYQ + + + + D V D QEAF+ AY L Sbjct: 1 MEDAELIQQVLKGRHEQYGLLVQRYQEPLIHFLRGILGAEDEVFDCAQEAFLAAYGNLWR 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + F WLY IA N A + + + R P S +++ PE L Sbjct: 61 YSDKYTFRAWLYAIARNKAIDLMRKRKREIPLSIDESLVDRQM----------GPEEAYL 110 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ++E V +E LPE R A+ LR LSYEEI+ +++ P+ +V++ + R +E + Sbjct: 111 AKEQALDVRAILEELPEHYRQALYLRYQQELSYEEISTVLNIPISSVKTHLHRGKEKLRQ 170 Query: 184 KVQ 186 ++ Sbjct: 171 IME 173 >UniRef50_B8I5U3 RNA polymerase sigma factor n=3 Tax=Clostridiales RepID=B8I5U3_CLOCE Length = 189 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 97/186 (52%), Gaps = 4/186 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 ++D +++ +K ++ L+ RY+ V ++ Y + D D+ QE FI +++++ Sbjct: 2 DVSDIAILKEYKKNRRRGLELVYDRYKKYVYTIAFHYAGNKEDALDITQEVFISVFKSME 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F+ + W+ +I VN N+L ++ P+ ++ I E + ++ + Sbjct: 62 GFKEQFSMLPWIKKITVNKCLNFLRSKK---PNLSLNEINENGDELQSIISSNEKTDDEV 118 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L +E RQI+ ++I SLPE RM + LR + + Y EIA +M P GTV++ I RAR+ I Sbjct: 119 LCKETRQILEQSIGSLPERERMVVLLRHIKQMKYSEIAIVMKLPPGTVKTLIHRARKTIK 178 Query: 183 NKVQPL 188 + L Sbjct: 179 ENMISL 184 >UniRef50_Q11IY6 RNA polymerase sigma factor n=8 Tax=Alphaproteobacteria RepID=Q11IY6_MESSB Length = 244 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 4/189 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E+L+D+ LV ++G + A LL+ R + + V + D+VQE ++ A+ L Sbjct: 18 ERLSDEELVHLARQGGESAIRLLIKRNNRSLFRVARAVVRDDAEAEDIVQETYVSAFTKL 77 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE---ISNP 118 DSFRG S F TWL RIA+N A + +++D E N S Sbjct: 78 DSFRGHSRFSTWLTRIALNEALGRARKRWPAAELAELDMAEGCNGGSVIMFPTSLKPPGA 137 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + +++R ++ ++ LP+ R+ LR+++ +S EE A + TV++R+ RAR Sbjct: 138 DAELARKQVRDLLETAVDELPDPFRLVFILRDVEEMSIEETAHQLSLKPETVKTRLHRAR 197 Query: 179 EAIDNKVQP 187 + V+ Sbjct: 198 RLMRLAVEK 206 >UniRef50_B4RD59 RNA polymerase sigma factor n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RD59_PHEZH Length = 238 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 9/190 (4%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 L++ LV R + GD AF ++ ++ V + DVVQEA+ KA++ LD Sbjct: 17 ALSEVELVGRARGGDAAAFRAIMQASNQRLFRTARSIVRDESEAEDVVQEAYAKAFQHLD 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK-----EISN 117 FRG++ TWL RI VN A+ L R D+ AIE E+G + + Sbjct: 77 GFRGEARILTWLTRIVVNEARGRLRK---RRTMVDLSAIEQAQGEAGRVVMFPGALAAGD 133 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 PE E+R+++ R ++ LPE LR+ LRE++ S E A + TV++R+ RA Sbjct: 134 PEREAARAEMRRLLERALDGLPEPLRLVFILREIEDCSVAETAQALGVRAETVKTRLHRA 193 Query: 178 REAIDNKVQP 187 R + + Sbjct: 194 RRQLRRTLDA 203 >UniRef50_Q0AXN3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXN3_SYNWW Length = 192 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 2/182 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 ++D++L E+ G+ AF LV RY+ V ++V R D D+ QE F+ + L Sbjct: 2 ISDELLAEQALLGNIAAFEELVNRYKKSVFAIVYRISGQYQDAEDISQEVFLTLFEKLYQ 61 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F F WL+RIAVNT+ + L + S + D + + + ++P ++ Sbjct: 62 FDRQKKFSPWLHRIAVNTSISALRKKKN-IISLNFDESFVSIAFNNRSHFDAADPHLMLE 120 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EELR+ + I LPE R I LR S +EIA I+ V ++ RAR A+ Sbjct: 121 REELREEIGTAIMQLPESYRTVIALRYQMEFSNQEIADILGISKDNVEVKVHRARMALRK 180 Query: 184 KV 185 ++ Sbjct: 181 RI 182 >UniRef50_C4ZMF7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thauera sp. MZ1T RepID=C4ZMF7_THASP Length = 198 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 9/178 (5%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDSA 69 + R + GD AF LV R+Q +V + R + + ++ Q+ F+KA++AL +R ++A Sbjct: 22 LARARAGDVAAFGALVRRHQERVFRFLHRMLDAREEAMELTQDVFVKAWQALPDWRPEAA 81 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F TWL +IA N A + L + + + +E + + PE S + + Sbjct: 82 FSTWLLQIARNAALDQLRRRQLVRFAPLEEGLEVAD--------DAPGPEARYASRQRQA 133 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 + R ++ L + R + LRE++GL+Y E+A+++ GTV+SR+ RAR A+ P Sbjct: 134 QLERALQRLAAEHREILLLREVEGLAYGELASVLGIAEGTVKSRLARARSALLEHFDP 191 >UniRef50_Q6MPU7 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPU7_BDEBA Length = 206 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 +TD LVE+V+ GD+++F+ LV R+Q V + R+V D DV QEAFIKAY L+ Sbjct: 6 NVTDLELVEKVKSGDRRSFSELVKRHQRSVLRMSLRFVKDMDTAEDVTQEAFIKAYEKLN 65 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +F G S+F +WL++IAVNTA+N L R + D+D ++ L + E + Sbjct: 66 TFEGRSSFKSWLFQIAVNTARNKLREWKR--DTVDIDDVQ---------LAVDAEAETTL 114 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + + I+ +E LP + A+ LR + LS+ EIA IM+CP T ++ A + Sbjct: 115 VHTAVSDILKNEVEKLPFKQKTALVLRVYEDLSFNEIADIMECPYDTAKANYRHALMKLR 174 Query: 183 NKVQP 187 + Sbjct: 175 QTFEQ 179 >UniRef50_Q01YV2 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YV2_SOLUE Length = 221 Score = 173 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 1/183 (0%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGD 67 LV+R Q GD+ AF +V RYQ KV S++ V DV D+ Q+ F K Y ++ SF Sbjct: 32 ALVQRAQSGDEVAFREIVERYQAKVFSIIHGIVRQRNDVEDIAQQVFAKVYLSIKSFDFR 91 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 S+ TW+Y+I VN +YL + R + D E E + + + + Sbjct: 92 SSLITWIYKITVNECFDYLRKRKVRKLVYESDMSEDEVRRVENSEPNVDRQVPIDATLAR 151 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 R V + + + E+ RM + ++E++G S EE+AA T++ ++FRAR+ + Q Sbjct: 152 RDYVVKLLTRVSEEERMLLMMKEVEGFSVEELAAQTGMNENTIKVKLFRARQKLVKAAQR 211 Query: 188 LIR 190 L R Sbjct: 212 LDR 214 >UniRef50_C1F2L1 RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2L1_ACIC5 Length = 208 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 3/188 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 + ++ + G ++ F+ L+ Y+ V + + + D +V QEAF+KA+RAL SFR Sbjct: 10 EARIIAAILAGQKELFHDLIRPYERHVYVMTFAILKNEADAEEVTQEAFLKAWRALPSFR 69 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL--KEISNPENLML 123 +S F TWL IA+N A+ L + + P S + E AL P ++ Sbjct: 70 AESRFGTWLVSIALNEARGRLRRKNQAPTDSIDETHEDGTPHVSPALLRDWREIPSEMLE 129 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E+R ++ I+ LP R LR+L+ LS E AA ++ V + R+ RAR + Sbjct: 130 RAEVRTLLRAAIDHLPLIYREIFLLRDLEELSVNECAAALNISVSAAKVRLHRARLLLQK 189 Query: 184 KVQPLIRR 191 ++ P ++ Sbjct: 190 ELAPQLKH 197 >UniRef50_A9G8Q1 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G8Q1_SORC5 Length = 324 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGD 67 + R Q GD AF + RY+ VA LV R + + DV DV+QE FI+ +R+L FRG Sbjct: 99 EWIRRFQSGDPTAFAEIFRRYRRDVARLVFRMLGPTADVEDVIQEVFIQVHRSLGDFRGQ 158 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 S F TWL+R+ VN A RP ++ E + P+ Sbjct: 159 SKFTTWLHRVTVNAVLMARRAARCRPVFVGELGVDIE-------VDRGMLPDEDAARARR 211 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 R +E LPE R+ L EL+G+ EIA I+ PV TVR+R+F AR I+ ++ Sbjct: 212 IDAFRRVLERLPEKKRVVYVLHELEGIPPNEIAEIVGAPVLTVRTRLFYARREIEAMMRA 271 >UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXK5_9CLOT Length = 204 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 11/187 (5%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 L D+ LVE+V GD +AF L +Y+ + D+VQE F++ Y + S Sbjct: 15 LEDRELVEKVANGDFEAFEELFNKYKGTAMRTAYLICGNKATSEDIVQETFVQCYLNIGS 74 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV--DAIEAENFESGGALKEISNPENL 121 + F TW Y+I A + + P ++ A +N ES K Sbjct: 75 LKNPDYFKTWFYKILTRMAWKLSKSDKKNVPIDEIFAKAEREQNHESDNMTK-------- 126 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L E +IV + +L E R + L +G S +EIA ++D GTV+SR+F+AR + Sbjct: 127 CLESETVEIVRSAVNNLDEKYRAVVVLYYFNGFSVKEIANMLDVFEGTVKSRLFKARRLL 186 Query: 182 DNKVQPL 188 K++ L Sbjct: 187 KGKIESL 193 >UniRef50_Q0VMH1 Rna polymerase sigma-e factor (Sigma-24) n=2 Tax=Alcanivorax RepID=Q0VMH1_ALCBS Length = 202 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 99/193 (51%), Gaps = 8/193 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 M L +ER+++GD+ AF +V + + + + + + D + VQ+A+I AYRA Sbjct: 1 MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRA 60 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA--------IEAENFESGGAL 112 + F G S TWL RI +N A+ L GR + +D + +++ Sbjct: 61 IAKFEGRSLLRTWLTRIVINQARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQH 120 Query: 113 KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 +++ P+ L+ +ELR + +T+ +P++ R+ + LR+L G+ +++I ++D VR Sbjct: 121 WDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQGMDFDDICNMLDVSASNVRV 180 Query: 173 RIFRAREAIDNKV 185 + RAR + V Sbjct: 181 LLHRARARLFELV 193 >UniRef50_D0LYF8 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF8_HALO1 Length = 220 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 4/168 (2%) Query: 22 FNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 F L + + + R S D+VQE ++AYR D+F+ DS WL+RI N Sbjct: 11 FEKLAIPHTDALFGAAFRMTRSQQGAEDLVQETMLRAYRFWDTFQQDSNCKAWLFRILTN 70 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFESGGALK---EISNPENLMLSEELRQIVFRTIES 137 T N R D E + + ++ NPE L+LS+ L V R +ES Sbjct: 71 TFINSYQKNKRSREVLDAAHNEQRATDGILVHERALDLRNPEELLLSQTLSDDVVRALES 130 Query: 138 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 LP D R+A+ L +++G SY+EIA I++CPVGTV SR+ R R + + Sbjct: 131 LPADFRVAVVLCDVEGFSYKEIAEILECPVGTVMSRLHRGRRLLQAAL 178 >UniRef50_A4FAV7 Putative RNA polymerase sigma factor n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FAV7_SACEN Length = 187 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 7/168 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 TDQ L+ Q+GD AF+ LV R+ + + R + + + D VQ+A++ A+R+L F Sbjct: 7 TDQALIAAAQRGDASAFDELVRRHTTTMYRVAVRILGNSSEAEDAVQDAWVSAWRSLKRF 66 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGD+A TWLYR+ N A + RR P+ +D + GG + +PE + Sbjct: 67 RGDAAPSTWLYRVVTNAALAQIR---RRRPTVPLD---VSDEAVGGLFADHRDPEGQAVR 120 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 E +V R I +L R+ + L E +G+ YEEIA ++D +RS Sbjct: 121 NEEATMVHRAIATLEPSQRVPLVLHEFEGMGYEEIAEVLDVGAPALRS 168 >UniRef50_A4ARC6 RNA polymerase sigma-70 factor n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A4ARC6_9FLAO Length = 224 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 ++++++ +++R+ G+++ + +L+ R K+ ++ Y+ ++ DV+Q ++KAY Sbjct: 11 NQRVSESDIIKRILSGEKELYEILLRRNNQKLYRVIRSYIKDEAEIEDVMQNTYLKAYEK 70 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L F+ S + TWL RI +N L +G+ + + N K NPE Sbjct: 71 LHQFKQSSLYSTWLVRIGINEVLARLREKGKVVDINTGISNYKSNTVLEIPDKNQLNPEK 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ +E+++++ TI+S+ R L+E++G+S +EIA +D V+ RI RA+ Sbjct: 131 RIIRKEMQRLIEDTIDSIDAKYRTVYILKEVEGMSVKEIAECLDISSSNVKVRIHRAKAM 190 Query: 181 IDNKVQPLIR 190 + K+ + Sbjct: 191 LKAKLYETAK 200 >UniRef50_A7HAL3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HAL3_ANADF Length = 220 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 14/200 (7%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 L D LV V+ GD+ AF LV R+ + +V + +VVQE ++ LD Sbjct: 18 LGDSELVALVRTGDRTAFGALVRRHGGALLRFARVFVRASSVAEEVVQETWMAVLEGLDG 77 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS-------DVDAIEAENFESGGALKEIS 116 F G ++F TWLYRI N A+ +GR P S D A++ + F++ G ++ Sbjct: 78 FEGRASFKTWLYRILANQARTRASREGRSIPFSALAETGGDDRAVDPDRFDAAGMWRDPP 137 Query: 117 ------NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV 170 PE L L E R ++ + LP R + LR+ DGL EEI ++ V Sbjct: 138 VGWTDETPERLALEAETRGVMESAVAGLPPAQRAVLVLRDEDGLETEEICNLLGLTVTNQ 197 Query: 171 RSRIFRAREAIDNKVQPLIR 190 R + RAR + ++ +R Sbjct: 198 RVLLHRARTRVRQAIEAHMR 217 >UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G5V6_CHLAD Length = 202 Score = 172 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 6/183 (3%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 +L+D+ L+E V GD A L R+ V L R + + + +VVQE F + ++ Sbjct: 12 RLSDETLMELVAAGDSTALAQLYDRHARVVYGLALRMLGAAEPAEEVVQETFWRVWKRAA 71 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +F+ AF W++ IA N + L + RP +S + ++ N E Sbjct: 72 TFQMQGAFLPWMFGIARNLCIDELRRRQVRPMTSGAGEELLTSLP-----DQMQNVEQAT 126 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L E R+++ + LP D R I L GLS EIA + P+GT+++RI + + Sbjct: 127 LEAERRRLISNALADLPPDQREVIELAYFGGLSQREIAEHLQSPLGTIKTRIRLGLQKLK 186 Query: 183 NKV 185 + Sbjct: 187 QAL 189 >UniRef50_A6C0F8 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0F8_9PLAN Length = 211 Score = 172 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 8/179 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +D LVE +KGD AF LV+RY+ ++ ++ ++V S D D+ Q+ F+K+Y LD F Sbjct: 23 SDARLVEAARKGDDSAFGELVLRYERRLIRVLIQFVKSPDLAEDLAQDTFLKSYERLDQF 82 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 F WL+RI VN A +YL Q RR ++ + +P N + Sbjct: 83 DTSRRFGPWLFRIGVNQALDYLRKQKRRGWWLLFSDSPSDTPFDPS----VPDPRNKL-- 136 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ++ Q V +E +PE R + LR+L+ S EIAAI+D T+R R+ AR Sbjct: 137 -DINQEVQAILEEIPEKYRTVLVLRDLENFSTSEIAAILDRKEATIRWRLAEARNRFQK 194 >UniRef50_Q1D4D9 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D4D9_MYXXD Length = 269 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 102/190 (53%), Gaps = 6/190 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS + TD+ L+E + GD KA + ++ R++ +V R S D +V+QE A+R Sbjct: 1 MSTR-TDEQLMEAARAGDDKALDEVLARHEKQVYRFGLRMCGSEEDAMEVLQETLFSAFR 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + +FRGD+A TWLY++A + + RR + D ++ + E + P+ Sbjct: 60 GIHAFRGDAALSTWLYQVA----RTHCFRLRRRRVGAPEDFQPLDSPAATNVAAEEATPD 115 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + ++ +++ I +LPE R + LR+++GL+ E+ A+++ V ++SR+ RAR Sbjct: 116 MVSHARQMGEVLQAAILALPEAHREVLILRDVEGLTAEDAASVVGIEVRALKSRLHRARL 175 Query: 180 AIDNKVQPLI 189 + + L+ Sbjct: 176 QMREHLATLL 185 >UniRef50_A1ZJQ1 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZJQ1_9SPHI Length = 187 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 13/192 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS+ +++ LV+ +KG ++A + Y K+ ++ RYV D +V+ F+K + Sbjct: 1 MSKLSSEKALVKGCRKGKRQAQQKVYELYSPKMFAVCLRYVRHQFDAEEVMTNGFLKVFS 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +D F+ + +F W+ RI VN A N+L R D++ I E+++ E Sbjct: 61 KIDQFKEEGSFEGWIRRIVVNEALNHLRKNKRHQAEVDIENI--------SEAAELASAE 112 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + +++ + + I+ LPE R L ++G S++EI + T +S++ RAR Sbjct: 113 DNLNAQD----LMKCIDQLPEGYRTVFNLYAIEGYSHKEIGEQLGISTNTSKSQLSRARV 168 Query: 180 AIDNKVQPLIRR 191 + V+ ++ Sbjct: 169 LLQKYVRNQEKK 180 >UniRef50_D2QZ03 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Planctomycetaceae RepID=D2QZ03_9PLAN Length = 224 Score = 172 bits (437), Expect = 6e-42, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 6/191 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 D L+ V+KG+ AF LV+RYQ ++ +++ V + + D+ QE F++ +RA + + Sbjct: 17 DVRLMLDVRKGNAGAFEELVLRYQSRLLTVLEHLVGNRELAEDLAQEVFLRVFRARERYE 76 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRR-----PPSSDVDAIEAENFESGGALKEISNPEN 120 + F TWL+ IA N A N L ++GRR P + A + P Sbjct: 77 PGAKFSTWLFTIANNVASNALRSRGRRKEVGVPQQAGASESGAMQLDQMAKANSGLMPTR 136 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + E ++V + IESL E RMA+ L + + +SY++IA+ M+ V +S + RAR Sbjct: 137 ALDKAEAAEVVRQAIESLSERQRMALLLSKFENMSYQDIASTMELTVQATKSLLSRARVN 196 Query: 181 IDNKVQPLIRR 191 + + + P + + Sbjct: 197 LRDILAPYVEQ 207 >UniRef50_Q7UFL5 RNA polymerase sigma factor n=1 Tax=Rhodopirellula baltica RepID=Q7UFL5_RHOBA Length = 211 Score = 172 bits (436), Expect = 7e-42, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 7/185 (3%) Query: 6 TDQ-VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 TD+ L+E GD AF LV+R+Q ++ + S D +V QEAFI+A+ LD+ Sbjct: 19 TDEGALIEAALSGDASAFEGLVIRHQDRLHHAMIHVTGSVHDAEEVTQEAFIRAFVKLDT 78 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F+ +S F+TWLYR+A N A + Q R E GG + + M+ Sbjct: 79 FQQNSQFFTWLYRVAFNIALSRKRRQKVRLSLDQQREEIGEEVVCGGEAVDAN-----MI 133 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ++ +V + L ++ R + LRE++ SYEE+A I++ +GTVRSR+ RAR+ + Sbjct: 134 RQDDVSLVQLALRQLSDEHRSILVLREMNESSYEEMAEILELSIGTVRSRLNRARKQLRL 193 Query: 184 KVQPL 188 ++ L Sbjct: 194 AIEQL 198 >UniRef50_C1ZLA9 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLA9_PLALI Length = 224 Score = 172 bits (436), Expect = 7e-42, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 8/175 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + LVE + G++ AF LV RYQ +V ++ R+V + V D+ QE F++A+ L F Sbjct: 24 EARLVESARSGNEDAFAELVHRYQRRVQRVIGRFVSDDETVADLTQETFLRAFVRLSQFD 83 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 F WL++I VN ++L + RR S E E+++P + Sbjct: 84 PSRRFGPWLFQIGVNLTLDHLRQKKRRIWWSLFSQTGQEKSPD----PEMADPRVKL--- 136 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 +L+Q V +E +PE R + LR+L+ S EIAA++ T+R R+ AR+ Sbjct: 137 DLQQEVQTVLEQIPEKYRTVLVLRDLENFSTSEIAAVLGRTEATIRWRLSEARQR 191 >UniRef50_A7BEQ0 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEQ0_9ACTO Length = 195 Score = 172 bits (436), Expect = 8e-42, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 2/184 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+ LV R Q GD AF LV RYQ ++ V + D D+VQE I+A+R++ Sbjct: 10 DDRCLVLRAQDGDIGAFEKLVNRYQGRLFRSAYMIVRNRQDSEDIVQETLIQAWRSIHLV 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPS-SDVDAIEAENFESGGALKEISNPENLML 123 R +AF WL RI N A + + Q RR D ++++ + + + ++P + Sbjct: 70 REPAAFRGWLVRICTNKATSLMRKQQRRATDPYDAESLDTVSNTAQASANNTADPADSSE 129 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + + + S+P +LR+ LRE+D ++YEEI ++ V TVR R+ RAR + Sbjct: 130 VNAQIKALADILASVPANLRIVWVLREIDEMTYEEIGQTLNLTVPTVRGRLARARSLVMR 189 Query: 184 KVQP 187 K++ Sbjct: 190 KMKE 193 >UniRef50_A7H7K8 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Anaeromyxobacter RepID=A7H7K8_ANADF Length = 230 Score = 172 bits (436), Expect = 8e-42, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 8/182 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP--SGDVPDVVQEAFIKAYRALDSF 64 D+ +V RV GD +F LL+ R+ +V + + S DV D +Q+ ++ AYRAL +F Sbjct: 18 DEAVVHRVLAGDTASFELLMRRHNQRVYRTIRAVLRRDSADVEDAMQQTYLHAYRALAAF 77 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G S+F TWL RIA+N A ++ Q V+ E PE+ Sbjct: 78 EGASSFGTWLTRIALNVALGFVRRQRVAGVELSVEVDEMTRGARD------EGPEDGAAR 131 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E ++ R + L ++ R+ LRE++ LS E A ++ V+ R+ RAR A+ Sbjct: 132 SEAAALLERAVAQLRDEHRIVFVLREVEQLSTAETAEALELSEENVKVRLHRARLALREI 191 Query: 185 VQ 186 + Sbjct: 192 LA 193 >UniRef50_C0A3E7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3E7_9BACT Length = 246 Score = 172 bits (436), Expect = 8e-42, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 8/191 (4%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E + D LV R GD+ AF +V R+Q ++ S+ + + GD ++ Q+ FI A+R L Sbjct: 29 EAVYDAALVVRFGGGDEAAFIEIVGRHQVRLFSVAFSMLRNRGDAEEIAQDVFIHAHRCL 88 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-----S 116 +FRG+S+ TWL+ +A+N A+N RR + + E L ++ Sbjct: 89 GTFRGESSLATWLHHVALNLARNRYWYFHRRYRHATISLDYTVGEEGASTLLDLMECGTP 148 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +P ++ E +++ + L + R +TL L+Y EIA ++ +GTV+SRI R Sbjct: 149 SPPREAVTREFTELIAVGMARLEDRQRAILTLSHT--LAYGEIARVLGINIGTVKSRIAR 206 Query: 177 AREAIDNKVQP 187 AR+ + + Sbjct: 207 ARDNLRACLSA 217 >UniRef50_A8L8U8 RNA polymerase, sigma-24 subunit, ECF subfamily n=7 Tax=Actinomycetales RepID=A8L8U8_FRASN Length = 303 Score = 172 bits (436), Expect = 8e-42, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 D + R GD AF L + ++ S+ + + D VQEA + A+R FR Sbjct: 28 DLEALRRHVAGDPDAFGELFRAHADRLWSVAFALLQDAEEAADAVQEAMLSAHRRAADFR 87 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G++A TWL+RI N A + L + RP A + +E ++ + + Sbjct: 88 GEAAVGTWLHRIVTNAALDRLRRRAVRPTVPMPSAPDGAPYEP-------ADARDAIAEH 140 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + R + + LP LR + L +++G S E+A ++D PVGTV+SR R R + + Sbjct: 141 DTRMDIGAALGMLPVTLRTPVVLVDVEGRSVAEVAELLDIPVGTVKSRCARGRARLAVLL 200 Query: 186 QPLI 189 L Sbjct: 201 GHLA 204 >UniRef50_C5RPF9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPF9_CLOCL Length = 187 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 17/187 (9%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S++L D+ ++ER++ GD+ ++ +Y+ + SL Y G+ D+ QE FI Y++ Sbjct: 4 SDKLCDEDIIERLKNGDKNQLVSVIEKYKKMIISLCYSYTQDYGEAEDLSQEVFISFYKS 63 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 +++FRGDS T+LYRI VN Y + +R + + E G ++ + Sbjct: 64 INNFRGDSKISTYLYRITVNKCITY---KKKRSVKMIFSGLFSHGKEEGISVID------ 114 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 R V + + LPE+L+ I L GLSY+EI+ +++ V RI+R + Sbjct: 115 -------RNEVRQAVRDLPEELKNPIILYYYLGLSYKEISDVLEISERAVEGRIYRGKNK 167 Query: 181 IDNKVQP 187 + +K+ Sbjct: 168 LKDKLNR 174 >UniRef50_UPI000197305F RNA polymerase ECF-type sigma factor n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197305F Length = 200 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 6/182 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + + LVER GD++AF+ L Y+ + + D D+VQ+ F+K Y + Sbjct: 1 MRETELVERFAAGDREAFDALYELYKDQAFRTAWFLAGNRADAEDIVQDTFVKVYVNIGQ 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + F +W YRI TA + ++GRR D + + + S ++ PE +L Sbjct: 61 LKDAGGFKSWFYRILTRTA--WKQSEGRRREFPDSEILTHADASSD--IQTDLTPER-LL 115 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EE RQ + ++ L E R + L + S IA IM C GTV+SR+F AR I Sbjct: 116 KEEERQRIRDAVDRLDEKHRTVLILYYFNEFSTRTIARIMGCLEGTVKSRLFTARRKIRA 175 Query: 184 KV 185 ++ Sbjct: 176 EL 177 >UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT Length = 924 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 2/192 (1%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M EQ + + LVER + GDQ+A L + K L + V D D++Q+AF+K + Sbjct: 1 MMEQ-SIRELVERAKMGDQQAIAALYEKTSRKAYYLSLQLVKDQDQAQDILQDAFLKVFT 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 L+ + F WL I +N +K+YL + S + E ++ + +PE Sbjct: 60 NLNMLQQPENFQGWLDTIVINKSKDYLKKKKPVLFSQMTGSEEPDSEPDFEDERGYFSPE 119 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + +E +++V I+ LPE+ RMA+ L L+ LS +IA +M+C GT++SR+ R+ Sbjct: 120 KQVDYQETKRLVQEMIDRLPEEQRMAVVLYYLENLSVGQIARLMECSEGTIKSRLNYGRK 179 Query: 180 AIDNKVQPLIRR 191 +I +V L ++ Sbjct: 180 SIKAQVLALEKK 191 >UniRef50_B4V9J8 RNA polymerase sigma factor SigM n=8 Tax=Streptomyces RepID=B4V9J8_9ACTO Length = 237 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 6/184 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +DQ L+ GD AF LV R++ ++ ++ R + + D VQ+A + AYRA +F Sbjct: 10 SDQELLALHAAGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTF 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG+SA TWL+RI VN + R S D E L+ + E Sbjct: 70 RGESAVTTWLHRITVNACLDRARKAASRKTSPLDDTERLERL-----LEPHESAEAPAER 124 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ++L + + + +LP + R + L ++ G E A I+D P GTV+SR R R + Sbjct: 125 QDLHRQLLAALATLPAEQRAVLVLVDMQGYPVAEAARILDVPTGTVKSRCARGRAKLLPM 184 Query: 185 VQPL 188 + L Sbjct: 185 LTHL 188 >UniRef50_B1ZRM6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRM6_OPITP Length = 192 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 1/180 (0%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFR 65 D L+E +Q GD A N L+ R++ + V RY+ DVVQE F++ Y F Sbjct: 4 DLPLIEALQAGDDSALNELINRHREPLHRFVFRYLRDETAAGDVVQETFVRVYFKAGKFA 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 S+ TW+Y I +N ++Y GRR +DA ++ P Sbjct: 64 PKSSVKTWIYTIGLNLCRDYGRRLGRRRADVSLDAPAHDDGPRFEVADSAPAPSVRAADA 123 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + + I+ LP L+ A+ L L+G S EIA + V +R++ A+ + + Sbjct: 124 DRFSRLQAAIDRLPRKLKEALVLFALEGRSQNEIAEFLRISPKAVETRVYHAKAKLRAAL 183 >UniRef50_Q67R01 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67R01_SYMTH Length = 186 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 5/171 (2%) Query: 19 QKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRI 77 A + L+ Y KV L Y+ DV QE FIKAYR ++FRG+S+ YTWLYRI Sbjct: 14 TAAIDHLMREYGTKVLHLAYSYLKDRHLAEDVAQEVFIKAYRNWENFRGESSAYTWLYRI 73 Query: 78 AVNTAKNYLVA-QGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIE 136 VN ++ + RR +D E A +PE ++ + R+ + + Sbjct: 74 TVNLCRDKARSAWWRRLLPTDDPRAAGTPVEPDTA---GDDPEEAVVLSDQRERLLDYVM 130 Query: 137 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 L + R I L L+ EIA + TV++R+FRAR + +Q Sbjct: 131 QLSDAYREVIILYYYHDLTTVEIAEVTGQNENTVKTRLFRARAMLKQMLQK 181 >UniRef50_Q47W09 RNA polymerase sigma-70 factor, ECF subfamily n=4 Tax=Alteromonadales RepID=Q47W09_COLP3 Length = 217 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%) Query: 2 SEQLTDQVL-VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 S D+ L + ++G Q AF L +Y ++ +L R + D DV QE F+ ++ Sbjct: 26 SGDSDDEQLWITEAKQGSQTAFYQLYEKYHRRIYALCWRMLADKDSAEDVCQEVFVVLWQ 85 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +++FRG+S F TWL+ +A N +L V +IE E G ++E P Sbjct: 86 KINNFRGESKFSTWLHSVATNVVLGHLRKHKN--WLQRVFSIE----EQGVGVQE---PS 136 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + ++ + I LPE R+ L ++G +EEI+ ++ VG+ +S+ RAR Sbjct: 137 VSLTDDSTLTLLDQHIARLPERARLVFVLFAVEGYRHEEISTMLKMAVGSSKSQYHRARS 196 Query: 180 AIDNKV 185 + + Sbjct: 197 LLKESL 202 >UniRef50_UPI00016C361F RNA polymerase ECF-type sigma factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C361F Length = 197 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 4/186 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 TD L+ R GD+ A + L RY+ + R + D D VQ+ F+ A LD F Sbjct: 14 TDDALLARFAAGDRSALDDLFRRYRGVAYRVAYRLLGCEADALDAVQDGFVNALTHLDRF 73 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G S+F TWL R+ N A + + R + + A+ + + ++ Sbjct: 74 VGRSSFKTWLLRVVCNAAHDIGRQRKR---NERMPQAPAQFSFDELRAADPPPADGGLVR 130 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +LR+I+ + LPE R L L+Y E+A + +GTV SR+F AR+ + Sbjct: 131 ADLRRILDAALARLPEVQRRTFVLHVEGELTYREVADALGISIGTVMSRLFYARQKLKEL 190 Query: 185 VQPLIR 190 + + Sbjct: 191 LAGYQQ 196 >UniRef50_C3KMI0 RNA polymerase sigma factor n=1 Tax=Rhizobium sp. NGR234 RepID=C3KMI0_RHISN Length = 242 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%) Query: 18 DQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYR 76 D AF L+ + K+ + V + D DV+QEA+++A+ FRGD+A TWL R Sbjct: 18 DLAAFRALMQSHNRKLYRIARSIVRNNSDAEDVLQEAYVRAFTHFPEFRGDAAITTWLAR 77 Query: 77 IAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIE 136 I +N A L R+ ++ E F + S+PE M ++ +V + + Sbjct: 78 IVINEALGRLRKSRRQMRLAETHQAEIIAFPLNS---DGSDPEKTMAQRQILDLVEKLTD 134 Query: 137 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 LP+ R LR ++GL+ EE A+++ TVR+R+ RAR + +++ Sbjct: 135 HLPDVYRSVFVLRVIEGLNNEETASLLGLKPETVRTRLHRARHLLKEQLEK 185 >UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY18_9BACT Length = 187 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 10/177 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D+VLVE V +GD AF L RY+ + L + + D D++QE FIK Y + + Sbjct: 10 DDRVLVELVLQGDNIAFEYLFERYKEAIHRLFIQRTNNPLDADDLLQETFIKVYINIHRY 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 F W+Y IA NT +++ RR +D + PE ++ Sbjct: 70 NPAYTFGQWVYTIARNTFVDFIR---RRQEDLPIDD------KFTAPPSNNPTPEENIIR 120 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++ R + R ++++P R I +R + SYEEIA ++ P+GTV+++I RARE + Sbjct: 121 KQQRTQIERYLQAMPPRYRQLIVMRFFEEYSYEEIAMKLELPLGTVKTQIHRAREQM 177 >UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8D0 Length = 187 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 7/179 (3%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGD 67 LV R ++GD AF LV R++ K+ R + D DVVQ+ ++A+++L++ Sbjct: 12 TLVVRAREGDIDAFESLVDRHETKLLRFCLRTLGDRQDAEDVVQDTLVQAWKSLNALSEP 71 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 +AF TW+YR+A N + L + RP + + + ++ E + + Sbjct: 72 AAFGTWIYRLASNKCTDMLRRRMARPSDAQ------DPDDMSIHPDGRASVEKSVEARTA 125 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 Q +++L + R+A L +++GLSY E+AA + G+VR RI RAR A+ ++ Sbjct: 126 LQHFSSVLQTLSSEQRVAWVLHQMEGLSYAEVAATLGISEGSVRGRIHRARTAVMEGME 184 >UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5Q9_GEMAT Length = 187 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 14/187 (7%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E L ++ LV Q GD AF LV R+Q + ++ V S D D VQE F+ A+RAL Sbjct: 10 EALEERELVLAAQAGDNVAFAGLVRRHQRRAYAVARAIVLSHDDAEDAVQEGFLHAFRAL 69 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + FR + AF WL+RI N A + + R + + + + + Sbjct: 70 ERFRPEQAFGAWLHRIVANAALDIARRRKVRDADELPETLSSPHRDP------------- 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 S+ELR + R +++L E R I L +++G + EI ++ P GT RS + AR + Sbjct: 117 AESDELRARLTRALDTLGERQRAVIVLHDVEGYKHAEIGTLLGIPEGTARSDLHHARAHL 176 Query: 182 DNKVQPL 188 ++ L Sbjct: 177 RRQLSNL 183 >UniRef50_A8W1I0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W1I0_9BACI Length = 184 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 6/182 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D+ LV+ KGD++AF L R+ V V V + D +++Q+ F+K R L F Sbjct: 2 DEELVKDALKGDERAFETLHARHADDVFRYVYMKVGNRQDAEELLQDVFVKMVRNLAGFS 61 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G S F TWL+ I +T +Y +GR V+ E ++ E + + Sbjct: 62 GKSTFRTWLFSIVRHTVIDYYRKKGRLQKEQPVENDLLE-----AVSDTTASAEEVASNR 116 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E R V SLPE R + LR ++G S +E A I V V+S RA+ + +V Sbjct: 117 EKRSHVSDAFNSLPEGHREILYLRFMEGFSLKETARITGKSVMAVKSLQKRAQAKMGEQV 176 Query: 186 QP 187 Sbjct: 177 DE 178 >UniRef50_C6XPB4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XPB4_HIRBI Length = 189 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 3/188 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSR-YVPSGDVPDVVQEAFIKAYRA 60 + + TD L G+++AF L+ RY+ + V R + D DV+QEAF A+R+ Sbjct: 3 NTERTDAELAVAAAGGEERAFTELMRRYKEPLYRYVHRSMRGNEDAYDVLQEAFTAAWRS 62 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 +D + F TW+Y IA+N +++ + R A E+ + N ++ Sbjct: 63 IDRYDPSRKFSTWIYHIALNKIRDHGRKRAVRSFF--FQAAPLESPDRPDIADHSQNVQD 120 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + V + +++LP+ LR TL+ L + E+A I+ + V +R++RAR+ Sbjct: 121 DYEHRDELNRVSKMVDALPDKLRQTFTLQVLQDMPQSEVAEILGVSIKAVETRVYRARKI 180 Query: 181 IDNKVQPL 188 + +V+ L Sbjct: 181 LQEQVEKL 188 >UniRef50_D1BAR5 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BAR5_SANKS Length = 206 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 L++ +V R Q GD AF L RYQ + L R + G+ D +Q+ I +R L S Sbjct: 19 LSEATIVGRAQDGDLAAFEELSRRYQGPLFRLAVRLLSDRGEAEDALQDTMITVWRKLPS 78 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRP--PSSDVDAIEAENFESGGALKEISNPENL 121 AF+ W+Y+I + L + RR PS D ++ G+ +P Sbjct: 79 LTDLPAFHGWVYQIMTRRCMSVLRTRARRSTDPSGDDTFLDGVGRGRLGSGTGGQDPAAA 138 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E + + + LP++ R LREL LSY EIA + P+ TVR RI RAR+ + Sbjct: 139 TEYAEQLRGLNAELARLPDEQRACWVLRELHELSYPEIAFATNLPLSTVRGRIARARQNL 198 Query: 182 DNKVQP 187 ++ Sbjct: 199 AKGMEA 204 >UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP6_ALIAD Length = 177 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 15/180 (8%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + D L+ R + GD +A +V YQ V + + D D QEAFI+A+R+L Sbjct: 2 EQADLELIRRARHGDPQAIETIVRNYQSFVYRTAYGILQNAADAEDATQEAFIRAFRSLG 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 R D F TWL RIAV + + + A+ RR + E G++ + Sbjct: 62 RLREDRTFPTWLARIAVRISLDMVQAKARR--------AQDPTEEIHGSVAGGED----- 108 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + LR + R + L + R I LR GL Y+EIA ++D P+GTVRSR+ AR + Sbjct: 109 -AASLRIDLERALAKLSPEHRTVIVLRAFHGLEYDEIAEVLDIPIGTVRSRLHHARMQLR 167 >UniRef50_Q5NZC6 ECF-family RNA polymerase sigma factor n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NZC6_AZOSE Length = 231 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 6/182 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D LV V G+ A ++ ++ + D D VQEA++ AYRAL F+ Sbjct: 16 DSELVAHVLHGEPGALERMMRANNRRLFRTARGILRDDADAEDAVQEAYVSAYRALADFK 75 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S+ TWL RI VN + L ++ R ++ A E PE + + Sbjct: 76 GESSLSTWLTRIVVNKSLERLRSRSRSGGLAEDSAAYDER-----QTAPAETPEAMAMRR 130 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 ELR+++ +I+ LP+ R LR ++ LS E AA + G V++ +FRAR + + + Sbjct: 131 ELRRVIESSIDRLPDGCRAVFMLRAVEELSVTETAASLGMSEGAVKTALFRARHLLRDTI 190 Query: 186 QP 187 Sbjct: 191 GR 192 >UniRef50_Q21I12 Sigma-70 region 2 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21I12_SACD2 Length = 179 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 16/186 (8%) Query: 4 QLTDQVLVERVQK-GDQKAFNLLVVRYQHKVASLVSRYVPSGD--VPDVVQEAFIKAYRA 60 ++DQ L+ RVQ GDQ AF+ LV ++Q +V S R + D+ QEAFIKAY A Sbjct: 2 TISDQTLIARVQANGDQHAFSQLVRKHQSQVRSWARRLCNGDEHLADDLAQEAFIKAYMA 61 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L +FRGD+ F WLYRI N A + + ++ + +I+ Sbjct: 62 LAAFRGDAKFSVWLYRIVFNVAASKWRKKK-------------LDWCNIDEQPDIAAEAC 108 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + + + R ++ L E R+A+ L +G S++E A +M P+GT+++ + RA+ Sbjct: 109 ELHQFAASEDITRAMQVLTEPQRIAVQLCFEEGFSHDEAAQVMGVPLGTLKTHVNRAKAK 168 Query: 181 IDNKVQ 186 + + Sbjct: 169 LKVSLA 174 >UniRef50_P66808 RNA polymerase sigma-E factor n=73 Tax=Actinobacteria (class) RepID=RPOE_MYCBO Length = 216 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 11/190 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + TD+ L R ++ A LL ++ R + D D++QE +KAY Sbjct: 19 EETDEELTARF---ERDAIPLL-----DQLYGGALRMTRNPADAEDLLQETMVKAYAGFR 70 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE--ISNPEN 120 SFR + WLYRI NT N + R+P + I S + + E Sbjct: 71 SFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEV 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L + +++LPE+ RMA+ +++G Y+EIA IMD P+GTV SR+ R R Sbjct: 131 EALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ 190 Query: 181 IDNKVQPLIR 190 + + + R Sbjct: 191 LRGLLADVAR 200 >UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W0_SPHTD Length = 237 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D+ L R+ GD A LV RY + + + R D+VQE F + + ++ Sbjct: 12 SDEALYRRLLAGDVAALEALVPRYHGPLLAFLYRLTGDRQQAEDLVQETFTR----IVTY 67 Query: 65 RGD--SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 RG+ + F W + +A N A ++L RR + ++ +L+ Sbjct: 68 RGEPPTRFRPWAFTVARNIALDHLRTAARRQAIAPRVTPSEDDDPFTTVPDPDPGALDLV 127 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L ++ R+ V ++ LP R + LR LS EIA + VGTV+SR+F + Sbjct: 128 LRDDDRRTVAAALQQLPPHQRETVVLRFYHDLSLNEIAEVTGVAVGTVKSRLFHGLRRLK 187 Query: 183 NKV 185 + Sbjct: 188 TLL 190 >UniRef50_B1HXE6 RNA polymerase sigma factor Y n=3 Tax=Bacillaceae RepID=B1HXE6_LYSSC Length = 182 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 10/184 (5%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSR-YVPSGDVPDVVQEAFIKAYRALDS 63 + + L+ R Q+GD+ A+ L+ +Q V + V S D+ DV QE F+K YR L Sbjct: 1 MVEADLIARAQQGDKDAYIDLIRIHQQTVERFAFQCGVHSNDLADVSQEVFVKLYRFLHQ 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F+ D F TWLY+I +N ++Y + R D + + E+ +L Sbjct: 61 FKQD-RFTTWLYKITLNATRDYYRKEQRELAKGDKLNAHRQTI--------FLSAEDDVL 111 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E + + I+SL E R I L L YEEIA +++ + TV+ R+ RA+E + Sbjct: 112 LFEEDRTLHNAIQSLDEKYRYPIVLYYFHELKYEEIAEVLNISLSTVKVRLLRAKEKLKA 171 Query: 184 KVQP 187 + Sbjct: 172 ALMQ 175 >UniRef50_UPI00018742C8 ECF-family sigma factor W n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI00018742C8 Length = 181 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 9/188 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M+ ++ ++ LV+R Q GDQ AF L+ Y+ V S+ R + D D A AY+ Sbjct: 1 MTTKVLERELVQRAQNGDQAAFAELIRLYKDSVFSVCLRMCSNYHDAEDAFSIAVASAYK 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 D FRG S+F TW +IA+N K +R +D+ N S G+ + Sbjct: 61 YFDRFRGSSSFKTWFTKIALNACKKQGQKIQKRTEMVQLDSDAGANMRSTGSDIDT---- 116 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + V ++ L + R + LREL G +YEEIAA P+ TV+SR+ RAR+ Sbjct: 117 ----RVAVVDQVQTALDQLRPNFREILILRELAGYTYEEIAAKQRIPLATVKSRLNRARK 172 Query: 180 AIDNKVQP 187 + ++ Sbjct: 173 QMLELLKE 180 >UniRef50_B9XGS8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XGS8_9BACT Length = 182 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 9/183 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 ++ L ER + GD A + LV + +V + + R + D D+ Q+ F + + +L SFR Sbjct: 5 EEQLCERAKAGDMAAASELVTLHYQRVYAFLRRLCGNDQDAEDLTQKTFARVWTSLASFR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G S+F TW++ IA + + + +D + E +E+ + E +P Sbjct: 65 GRSSFSTWVHGIAYHVCIDARRKRN------HLDTMTEEWWETC--VAEGPSPLENTAER 116 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E+ ++ +E+L +R + L GLS +E A ++ TV+ R+ +A E + K Sbjct: 117 EMATQLYSWVETLESGVREVVHLHYYQGLSLQETAEVLGIATSTVKYRLRQALETLKAKT 176 Query: 186 QPL 188 + + Sbjct: 177 EKI 179 >UniRef50_C1ABI4 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABI4_GEMAT Length = 204 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 12/186 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 +TD L++R++ GD A R+ +V L+ R + + Q+ F++A+ ++ Sbjct: 1 MTDTELIDRLKAGDHGAERDFYERHVDRVYRLILRMSGRPELAQEWTQDTFLRAFSRIEQ 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 FRGDSA +WL+ IAV+ N L RR A E + S+P+ Sbjct: 61 FRGDSALSSWLHVIAVSITLNGLRTHKRREAF----AAPLEEATTVARWSGESDPD---- 112 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 L+ + I +LP+ R + +++G ++EEI + VGT +S++FRARE + Sbjct: 113 ---LKVRLRAAIAALPDGTRRVFVMHDVEGFTHEEIGEALGVAVGTSKSQLFRAREKLRV 169 Query: 184 KVQPLI 189 + Sbjct: 170 ALAAFA 175 >UniRef50_Q3APD6 RNA polymerase sigma factor n=10 Tax=Chlorobiaceae RepID=Q3APD6_CHLCH Length = 233 Score = 169 bits (429), Expect = 5e-41, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 1/164 (0%) Query: 29 YQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 + + + + + D D+VQE ++KAYR DSF + WL++I N N Sbjct: 57 HLNSLYNYALHLTMNADDAEDLVQETYLKAYRFFDSFEKGTNCKAWLFKILKNNYINRFR 116 Query: 88 AQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAIT 147 R P D DAI+ + S E+ L + V++ ++SLPE+ R I Sbjct: 117 KDTREPGFVDYDAIKDFYHTIKDVQSDTSETESDYFHSLLHEEVYQALKSLPEEFREVIQ 176 Query: 148 LRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 L +++G +YEEIA +++ P+GTVRSR++R R+ + +++ + Sbjct: 177 LCDIEGFTYEEIANMVESPIGTVRSRLYRGRKLLHEQLKEYAEK 220 >UniRef50_C3BA74 Putative uncharacterized protein n=3 Tax=Bacillus RepID=C3BA74_BACMY Length = 192 Score = 169 bits (429), Expect = 5e-41, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 12/184 (6%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E + + LV++ +KGD AF L+ YQ ++ YV + D D+VQE KAY ++ Sbjct: 5 ETMDEIKLVKKARKGDDAAFEQLISLYQDQLYRTAYLYVQNKEDALDIVQETVYKAYLSI 64 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + + + F TWL RI ++ A L + + E G N Sbjct: 65 EQLKKPNYFLTWLTRILIHNAYQLLSEKKKVKK-----------IEDGREADTYGEMPNK 113 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + E + I+ L E+ + I L LS +IA M+ P GTV++ + RAR+A+ Sbjct: 114 LHQIEQNIDLQEAIQKLDENYQTVIILYYYHDLSINKIAWQMNIPEGTVKTYLHRARKAL 173 Query: 182 DNKV 185 N + Sbjct: 174 KNLL 177 >UniRef50_C1AC29 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC29_GEMAT Length = 192 Score = 169 bits (429), Expect = 5e-41, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 13/190 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M+ TD +V R +GD++A LL ++ V ++V R D D+ QE +I+ +R Sbjct: 1 MNAMETDAAIVRRAIEGDERAMRLLWNQHAPHVDAVVRRLAGDPDLAQDIAQEVWIQIFR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL S+RGD+ F TW++R+A+N N + R + +E E + E Sbjct: 61 ALPSWRGDAKFSTWIHRVAINRTLNAMRRVKR------LSTVETAIEEDSAVV------E 108 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L Q + + L R L +++G ++EEIA + G +S++F+AR Sbjct: 109 QDAERSMLAQTIAEATQRLSPGARTVFLLHDVEGYTHEEIATELGITAGGSKSQLFKARA 168 Query: 180 AIDNKVQPLI 189 + + PL+ Sbjct: 169 KLRRLLAPLV 178 >UniRef50_C1ZMC3 RNA polymerase sigma factor n=3 Tax=Planctomycetaceae RepID=C1ZMC3_PLALI Length = 208 Score = 169 bits (429), Expect = 5e-41, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 5/188 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 D L+ R ++GD AF+ LV YQ ++ ++ V D+ QE F++ YRA +S+ Sbjct: 20 DVQLMLRAKQGDDAAFSQLVAAYQDRLVGILHHLVQDQQTAEDLAQEVFLRIYRARESYV 79 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS----DVDAIEAENFESGGALKEISNPENL 121 + F TWL+++A N A N +GRR S + ++ + E K P Sbjct: 80 ATARFSTWLFKVANNLASNSRRNKGRRKEISLAGNESGSMGSRPEEQLVVEKSALMPARQ 139 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + EL+ V +E L RMA+ L + +G+SY +IA MD V+S + RARE + Sbjct: 140 LDKAELQAAVRAAMEQLNSRQRMAVLLHKFEGMSYADIAETMDLTQPAVKSLLARARENL 199 Query: 182 DNKVQPLI 189 ++ + Sbjct: 200 REFLERYV 207 >UniRef50_Q02BU8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BU8_SOLUE Length = 219 Score = 168 bits (428), Expect = 6e-41, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 6/185 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 +Q + L + G AF V ++ KV S D +V QE +K + Sbjct: 2 DQQGETELARALLAGKADAFERFVEHFRSKVFHYSWVMCGSPQDAEEVAQETLLKVFDNF 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE-ISNPEN 120 D R W++RIA N + RR + + E +G + E I PE Sbjct: 62 DQLREPERVRAWVFRIAKNVCLMH----RRRSVFAPAHELSLEELPAGSDIAESIDPPEG 117 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 +L ELR ++ R I LP R + LR+++ LS EE A ++D + V++R+ R R A Sbjct: 118 DLLRSELRAVIDRVIAELPPTYRAVVLLRDMEELSTEETAQVLDLSIDVVKTRLHRGRAA 177 Query: 181 IDNKV 185 + K+ Sbjct: 178 MRQKL 182 >UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira RepID=Q04U83_LEPBJ Length = 207 Score = 168 bits (428), Expect = 6e-41, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 8/177 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 L++++++GD +A+ LV ++ ++ V GD D+VQ+A I YR++ +FR DS Sbjct: 27 LLKKIKEGDDEAYIQLVNPFRERLYRKAVSMVKDGDDAEDIVQDALISGYRSIRNFRADS 86 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 YTWLYRI VN +K+ L + R +S D + G E + + Sbjct: 87 GVYTWLYRIVVNKSKDMLAKRKRAKENSMDDKEYQVTDDRVGF-------EKKIELSDES 139 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + I L + + I LR + +SY +IA ++ VGTV+SR+F+A+E + + + Sbjct: 140 NYLISKINGLEDLYKEVIELRYFEEMSYAQIAEVLGTNVGTVKSRLFKAKEFLKHLI 196 >UniRef50_Q4PK18 RNA polymerase sigma factor n=1 Tax=uncultured bacterium MedeBAC49C08 RepID=Q4PK18_9BACT Length = 163 Score = 168 bits (428), Expect = 7e-41, Method: Composition-based stats. Identities = 65/137 (47%), Positives = 94/137 (68%), Gaps = 3/137 (2%) Query: 47 PDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENF 106 D+ QEAFIKAY + F+ DSAF+TWLYRIAVNTAKN+L ++ + + + E Sbjct: 15 EDIAQEAFIKAYINIGGFKEDSAFFTWLYRIAVNTAKNHLSSKYNKNEIIESEIDENILT 74 Query: 107 ESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCP 166 + G + +PE+++ + LR +F+ + +PE+++ AITLRE +GL+YEEIA I +CP Sbjct: 75 QIGI---DSPSPESILEANTLRDRLFQCLNDMPEEIKSAITLREFNGLNYEEIAKICNCP 131 Query: 167 VGTVRSRIFRAREAIDN 183 VGTVRSRIFR R+ +D Sbjct: 132 VGTVRSRIFRGRQLLDE 148 >UniRef50_Q2IU66 Sigma-24 (FecI-like) n=29 Tax=Rhizobiales RepID=Q2IU66_RHOP2 Length = 231 Score = 168 bits (428), Expect = 7e-41, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 10/186 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 + D+VL+ R+ +GD+ A +L R+Q +V R V + D++ E F+ +R Sbjct: 47 QATADEVLIARIAQGDRSAMQVLYGRHQVRVFRFGLRLVRNEQIAEDLISEVFLDVWRQA 106 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F G S+ TWL I A + L + E ++ + +PE Sbjct: 107 GKFEGRSSVSTWLLAITRFKALSALRRRK---------DAELDDEAAAAIEDPSDDPEVA 157 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++ ++ + +E L D R + L S EE+A I+ P TV++R+F AR+ + Sbjct: 158 VQKKDTSDVLRKCLEGLSSDHREIVDLVYYHEKSVEEVAHIVGIPENTVKTRLFYARKKL 217 Query: 182 DNKVQP 187 + +Q Sbjct: 218 ADLLQA 223 >UniRef50_A5CQL0 RNA polymerase sigma factor n=4 Tax=Actinomycetales RepID=A5CQL0_CLAM3 Length = 274 Score = 168 bits (427), Expect = 8e-41, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 4/183 (2%) Query: 12 ERVQKGD-QKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 + Q GD ++ F + + ++ + R + D D+VQE F+KAY A F+ + Sbjct: 78 RKAQPGDNRELFEEQALPFIDQLYAAGLRMTRNPADAQDLVQETFVKAYTAFHQFKQGTN 137 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENF--ESGGALKEISNPENLMLSEEL 127 WLYRI NT N + R P + +D +E + + E + Sbjct: 138 LKAWLYRILTNTFINNYRKKQRDPYNGTIDELEDWQLGGATSATATTTRSAEAEAIDHLP 197 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 V ++S+PED RMA+ +++G SY+EIA IM PVGTV SR+ R R + + + Sbjct: 198 DSTVKDALQSIPEDFRMAVYFADVEGFSYQEIADIMKTPVGTVMSRLHRGRRMLRSLLSD 257 Query: 188 LIR 190 R Sbjct: 258 YAR 260 >UniRef50_A6W8E3 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Actinomycetales RepID=A6W8E3_KINRD Length = 235 Score = 168 bits (427), Expect = 8e-41, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 4/185 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALD 62 ++ D L GD+ AF +V R+ + + DV D VQ+AF+ A+R L Sbjct: 53 DEAPDASLARWAAMGDRDAFARIVDRHGPALMRYARNLLSGSDVEDCVQDAFLAAWRGLP 112 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +FRGD++ TWL+ +A + A L RR P+S +PE Sbjct: 113 AFRGDASLRTWLFTLARHAAFARL----RRWPASGSRPHVPVEEVQDRLRDLREDPERSS 168 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + LRQ + ++ LP R A LRE++GLSYEEIAA++ VR + R+R + Sbjct: 169 VETALRQALEVALQLLPPRQRSAWLLREVEGLSYEEIAAVLSTSPTAVRGLLERSRTTLA 228 Query: 183 NKVQP 187 ++ Sbjct: 229 TTLED 233 >UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily n=9 Tax=Actinomycetales RepID=A8L2E7_FRASN Length = 305 Score = 168 bits (427), Expect = 9e-41, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 22 FNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 + +V + ++V L R + D D+ Q+ F++ +R+L + + F WL+RI N Sbjct: 54 WEDVVREHGNRVYRLAYRLTGNAHDAEDLTQDVFVRVFRSLADYTPGT-FEGWLHRITTN 112 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPE 140 + + Q + DA+ + G ++PE + L V + +LP Sbjct: 113 LFLDRMRRQQK----IRFDALPEDTERLAGR---EASPEAVYAESHLDADVEAALAALPP 165 Query: 141 DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 D R A+ L +++ LSYEEIA + +GTVRSRI R R + + Sbjct: 166 DFRAAVVLCDIEQLSYEEIAQTLGVKLGTVRSRISRGRAMLRAALAD 212 >UniRef50_D2NSB5 DNA-directed RNA polymerase, sigma subunit n=3 Tax=Actinomycetales RepID=D2NSB5_9MICC Length = 246 Score = 168 bits (427), Expect = 9e-41, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 28 RYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYL 86 +Y ++ + R + D D+VQE ++KA+ + F + WLYRI NT N Sbjct: 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLY 82 Query: 87 VAQGRRPPSSDVDAIEAENFESGGALKEI--SNPENLMLSEELRQIVFRTIESLPEDLRM 144 + R P S + +E G + + E LS V + L ED RM Sbjct: 83 RKRQREPQQSQGETVEDWQLAQAGEHDAVGLRSAEAEALSALPNTEVREALNELSEDFRM 142 Query: 145 AITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIR 190 + +++G +Y++IA I+D P+GTV SR+ R R + K+ R Sbjct: 143 VVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKLLDYAR 188 >UniRef50_Q5L9L9 RNA polymerase sigma factor n=32 Tax=Bacteroidales RepID=Q5L9L9_BACFN Length = 182 Score = 168 bits (427), Expect = 9e-41, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 18/190 (9%) Query: 1 MSEQLTDQVLVERVQK-GDQKAFNLLVVRYQHKVASLVSRYV--PSGDVPDVVQEAFIKA 57 MS QL D LV +V + +AF+ LV +YQ V S D+ Q+ FIKA Sbjct: 1 MS-QLNDISLVAQVVVFRNTRAFDQLVQKYQSPVRRFFLNLTCGDSELSDDLAQDTFIKA 59 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 Y + +F+ S+F TWLYRIA N +Y+ ++ + ++A ++ + ++++ Sbjct: 60 YTNIANFKNLSSFSTWLYRIAYNVFYDYIRSRK------ETTDLDAREVDAANSTEQVNV 113 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 E + V++++ +L E R ITL ++ +S ++IA I CPVGTV+S + RA Sbjct: 114 GEQM--------DVYQSLRTLKEIERTCITLFYMEDVSIDKIAGITGCPVGTVKSHLSRA 165 Query: 178 REAIDNKVQP 187 ++ + ++ Sbjct: 166 KDKLAIYLKQ 175 >UniRef50_C6PS15 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PS15_9CLOT Length = 221 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 97/183 (53%), Gaps = 3/183 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D+ L+ R +K D+ A L Y+ + L Y + D D+VQE +IK + ++ F Sbjct: 38 DKKLILRCKKYDKPALMELFKIYEKYLYRLCYSYCQNQQDALDLVQEIYIKIFNNINKFN 97 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 D F+ W+ +++VN N+ + + ++ E+ + N E+ + Sbjct: 98 DDMPFHPWVRKLSVNICLNF--KRTIKSNVVSLNGELNEDSTLEDTVASDFNVEHEIEKM 155 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +L++I+ +++LPE+ R+ I LR + LSY EI+ ++ P+GT+++ ++RA+ + K+ Sbjct: 156 DLKRILKENLKALPENYRLVIILRYYENLSYNEISELLCKPLGTIKTDLYRAKALLKKKL 215 Query: 186 QPL 188 + + Sbjct: 216 ENI 218 >UniRef50_B3DVU8 RNA polymerase sigma factor n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DVU8_METI4 Length = 197 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 4/187 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 + + TD +L+E KGD +A++LLV R+ + + + ++ Q+ F++AYRA Sbjct: 5 NMEYTDSMLMELTAKGDDEAYSLLVQRHYQAIFGAAVKMLKDRYLAEEITQKVFLQAYRA 64 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + + TWLY I N + S E + ++P + Sbjct: 65 AGRYEPRAKLRTWLYTILRRLVFNQFRK---KEIQSSPLVTEKGEDRDITTYQSTTSPLD 121 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ +E + + ++I+ LP RMA+ L+ + LSYEEIA I+ V +S +FRARE Sbjct: 122 HLMKQEQMEWIEKSIDGLPPRQRMAVILKSYEDLSYEEIARILGVSVPATKSLLFRARET 181 Query: 181 IDNKVQP 187 + + Sbjct: 182 LREAFRK 188 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AGB8 RNA polymerase sigma-E factor n=237 Tax=Proteoba... 247 1e-64 UniRef50_A3DDU5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 233 3e-60 UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily ... 232 4e-60 UniRef50_Q47WN8 RNA polymerase sigma factor n=20 Tax=Gammaproteo... 230 1e-59 UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 230 3e-59 UniRef50_Q06198 RNA polymerase sigma-H factor n=265 Tax=cellular... 229 4e-59 UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=... 228 8e-59 UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily ... 225 5e-58 UniRef50_Q2SL40 RNA polymerase sigma factor AlgU n=4 Tax=Proteob... 223 2e-57 UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily ... 222 6e-57 UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily ... 221 1e-56 UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter... 219 3e-56 UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma su... 219 4e-56 UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily ... 217 1e-55 UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 217 1e-55 UniRef50_B8I3Y9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 216 3e-55 UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacill... 216 4e-55 UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 216 4e-55 UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacte... 215 7e-55 UniRef50_B1ZTI0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 214 1e-54 UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacet... 212 4e-54 UniRef50_Q67KY4 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 212 5e-54 UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=M... 212 6e-54 UniRef50_UPI00016939CD RNA polymerase ECF-type sigma factor n=1 ... 211 9e-54 UniRef50_A4BBJ0 RNA polymerase sigma factor n=1 Tax=Reinekea bla... 210 3e-53 UniRef50_B3DXV9 DNA-directed RNA polymerase specialized sigma su... 209 3e-53 UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=S... 209 4e-53 UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 208 1e-52 UniRef50_B9XG21 RNA polymerase, sigma-24 subunit, ECF subfamily ... 208 1e-52 UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium El... 207 2e-52 UniRef50_B4D0E9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 207 2e-52 UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex de... 207 2e-52 UniRef50_B5YDF0 RNA polymerase sigma-E factor n=2 Tax=Dictyoglom... 206 3e-52 UniRef50_Q0AVE0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 206 4e-52 UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 205 6e-52 UniRef50_Q1INR3 Sigma-24, ECF subfamily n=3 Tax=cellular organis... 205 8e-52 UniRef50_A9BNK1 RNA polymerase sigma factor n=12 Tax=Proteobacte... 203 2e-51 UniRef50_Q2RYX7 Extracytoplasmic function alternative sigma fact... 203 3e-51 UniRef50_A4A074 RNA polymerase sigma factor, sigma-70 family pro... 202 5e-51 UniRef50_A4GHT6 RNA polymerase sigma-70 factor n=1 Tax=unculture... 202 5e-51 UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 202 6e-51 UniRef50_Q01QB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 201 1e-50 UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured ma... 200 2e-50 UniRef50_A6NW06 Putative uncharacterized protein n=1 Tax=Bactero... 200 2e-50 UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella the... 200 3e-50 UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 200 3e-50 UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF sub... 199 3e-50 UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 198 6e-50 UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6... 198 7e-50 UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 198 1e-49 UniRef50_C1AEN0 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 198 1e-49 UniRef50_A5V1V8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 198 1e-49 UniRef50_C5CIP4 RNA polymerase sigma factor n=1 Tax=Kosmotoga ol... 197 1e-49 UniRef50_B5VYK7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 197 1e-49 UniRef50_A6C5N0 RNA polymerase sigma factor RpoE n=1 Tax=Plancto... 197 2e-49 UniRef50_B7R6J3 RNA polymerase sigma factor, sigma-70 family n=5... 197 2e-49 UniRef50_A6GDP6 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 197 2e-49 UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2... 197 2e-49 UniRef50_Q1D378 RNA polymerase sigma-70 factor, ECF subfamily n=... 196 3e-49 UniRef50_Q1IHX3 Sigma-24, ECF subfamily n=3 Tax=Acidobacteria Re... 196 3e-49 UniRef50_Q1CYD9 RNA polymerase sigma-70 factor, ECF subfamily n=... 196 4e-49 UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacte... 195 5e-49 UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobact... 195 6e-49 UniRef50_Q2LQI1 Sigma factor n=1 Tax=Syntrophus aciditrophicus S... 195 6e-49 UniRef50_UPI00016C0B7C RNA polymerase ECF-type sigma factor n=1 ... 195 7e-49 UniRef50_B8JDV3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 195 9e-49 UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 195 1e-48 UniRef50_A0LHW6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 194 1e-48 UniRef50_B1I6K2 RNA polymerase sigma factor n=5 Tax=Clostridiale... 194 1e-48 UniRef50_A9G0E6 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 194 1e-48 UniRef50_C6CUE1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 194 2e-48 UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacter... 193 2e-48 UniRef50_C1F7G4 RNA polymerase sigma factor n=1 Tax=Acidobacteri... 193 2e-48 UniRef50_D0MJ41 RNA polymerase, sigma-24 subunit, ECF subfamily ... 193 3e-48 UniRef50_Q11VU6 RNA polymerase sigma-24 factor n=3 Tax=Sphingoba... 193 3e-48 UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinom... 193 4e-48 UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1... 192 4e-48 UniRef50_C0ZBY3 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 192 4e-48 UniRef50_B7KDZ7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 192 5e-48 UniRef50_Q11XN6 RNA polymerase, ECF-type sigma factor n=1 Tax=Cy... 192 6e-48 UniRef50_Q01V29 RNA polymerase, sigma-24 subunit, ECF subfamily ... 192 6e-48 UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 192 6e-48 UniRef50_Q01Z55 RNA polymerase, sigma-24 subunit, ECF subfamily ... 192 6e-48 UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=... 192 8e-48 UniRef50_A6G087 RNA polymerase sigma-E factor n=1 Tax=Plesiocyst... 192 8e-48 UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 9e-48 UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrired... 191 9e-48 UniRef50_D2MK89 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 1e-47 UniRef50_B3QZ33 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 1e-47 UniRef50_B3E7K8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 191 1e-47 UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus S... 191 1e-47 UniRef50_Q67K53 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 190 2e-47 UniRef50_Q2IIH1 Sigma-24 (FecI-like) n=4 Tax=Anaeromyxobacter Re... 190 2e-47 UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 190 2e-47 UniRef50_Q1IJV0 Sigma-24, ECF subfamily n=2 Tax=Acidobacteria Re... 189 4e-47 UniRef50_Q67KL8 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 189 4e-47 UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family prote... 189 5e-47 UniRef50_C4KZK8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 189 5e-47 UniRef50_B2UN43 RNA polymerase, sigma-24 subunit, ECF subfamily ... 189 5e-47 UniRef50_C1ZDS5 RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=P... 189 5e-47 UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 188 6e-47 UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Coryneb... 188 9e-47 UniRef50_C7PJ26 RNA polymerase, sigma-24 subunit, ECF subfamily ... 188 9e-47 UniRef50_A7HKZ1 RNA polymerase sigma factor n=1 Tax=Fervidobacte... 188 9e-47 UniRef50_A0LQ54 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 187 1e-46 UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizob... 187 1e-46 UniRef50_A5GDM9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 187 1e-46 UniRef50_A9BGN8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 187 2e-46 UniRef50_Q01Q68 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 187 2e-46 UniRef50_A0LEX1 Transcriptional regulator, Fis family n=1 Tax=Sy... 187 2e-46 UniRef50_A1HLQ9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 187 2e-46 UniRef50_C0ZCF1 RNA polymerase ECF-type sigma factor n=3 Tax=cel... 187 2e-46 UniRef50_A8TRK4 Sigma-24, ECF subfamily protein n=1 Tax=alpha pr... 187 2e-46 UniRef50_C8R1R3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 187 2e-46 UniRef50_B7IH95 RNA polymerase sigma factor n=7 Tax=Thermotogace... 187 2e-46 UniRef50_A2U163 RNA polymerase sigma factor n=1 Tax=Polaribacter... 187 2e-46 UniRef50_A5UX09 RNA polymerase, sigma-24 subunit, ECF subfamily ... 186 3e-46 UniRef50_Q97E49 Specialized sigma subunit of RNA polymerase n=1 ... 186 3e-46 UniRef50_A0LYR6 RNA polymerase sigma factor n=1 Tax=Gramella for... 186 3e-46 UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 186 5e-46 UniRef50_C1A5K6 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 185 5e-46 UniRef50_D2QJ11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 5e-46 UniRef50_A6GAU3 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 185 6e-46 UniRef50_D1CFG7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 6e-46 UniRef50_A9GBY9 ECF-family RNA polymerase sigma factor n=1 Tax=S... 185 7e-46 UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 8e-46 UniRef50_Q93RF4 Orf protein n=1 Tax=Treponema medium RepID=Q93RF... 185 9e-46 UniRef50_Q2BEM6 RNA polymerase sigma factor n=1 Tax=Bacillus sp.... 185 9e-46 UniRef50_A6LL38 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 9e-46 UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 185 1e-45 UniRef50_B4WJK4 RNA polymerase sigma factor, sigma-70 family n=1... 184 1e-45 UniRef50_Q1IS06 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 184 1e-45 UniRef50_D1C360 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 184 1e-45 UniRef50_C0ZGW3 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 184 1e-45 UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus ... 184 1e-45 UniRef50_B8I824 RNA polymerase, sigma-24 subunit, ECF subfamily ... 184 2e-45 UniRef50_D2Q537 RNA polymerase, sigma-24 subunit, ECF subfamily ... 184 2e-45 UniRef50_UPI00016C5256 RNA polymerase ECF-type sigma factor n=1 ... 183 2e-45 UniRef50_D2QGU1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 183 2e-45 UniRef50_C1ZG18 RNA polymerase sigma factor, sigma-70 family n=1... 183 2e-45 UniRef50_D1C1C9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 183 2e-45 UniRef50_Q47E65 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Dech... 183 3e-45 UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 183 3e-45 UniRef50_A5FKW0 RNA polymerase sigma factor n=4 Tax=Flavobacteri... 183 3e-45 UniRef50_B9XQJ1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 183 3e-45 UniRef50_A1ZQJ0 RNA polymerase ECF-type sigma factor n=1 Tax=Mic... 182 4e-45 UniRef50_A4XDI9 Sigma-70 region 2 domain protein n=16 Tax=Actino... 182 5e-45 UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 182 5e-45 UniRef50_B9L046 Group3 RNA polymerase sigma factor n=2 Tax=Therm... 182 6e-45 UniRef50_Q7MU87 RNA polymerase sigma-70 factor, ECF subfamily n=... 182 6e-45 UniRef50_B3EM30 RNA polymerase sigma factor n=8 Tax=Chlorobiacea... 182 6e-45 UniRef50_C6N7I6 RNA polymerase sigma E factor RpoE n=2 Tax=Legio... 181 7e-45 UniRef50_Q127J2 Sigma-24 (FecI-like) n=6 Tax=Burkholderiales Rep... 181 9e-45 UniRef50_B8GD43 RNA polymerase, sigma-24 subunit, ECF subfamily ... 181 1e-44 UniRef50_A6TSA9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus... 181 1e-44 UniRef50_C6CYB2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 181 1e-44 UniRef50_C0Z9P5 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 181 1e-44 UniRef50_Q82IU5 RNA polymerase sigma factor n=3 Tax=Streptomyces... 181 1e-44 UniRef50_C0ZJR5 RNA polymerase ECF-type sigma factor n=2 Tax=Bre... 181 1e-44 UniRef50_C8PSN5 RNA polymerase sigma factor, sigma-70 family n=1... 181 1e-44 UniRef50_C1F2L1 RNA polymerase sigma factor n=1 Tax=Acidobacteri... 180 2e-44 UniRef50_Q1IUC0 RNA polymerase sigma factor n=1 Tax=Candidatus K... 180 2e-44 UniRef50_C6XIM9 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 180 2e-44 UniRef50_D2QRT0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 180 2e-44 UniRef50_Q3B236 Sigma-24 (FecI-like) n=3 Tax=Chlorobiaceae RepID... 180 2e-44 UniRef50_C7ICT2 RNA polymerase sigma factor n=1 Tax=Clostridium ... 180 3e-44 UniRef50_B0P2V0 RNA polymerase sigma factor n=1 Tax=Clostridium ... 180 3e-44 UniRef50_Q8DM09 Group3 RNA polymerase sigma factor n=2 Tax=Cyano... 179 4e-44 UniRef50_A6EDP4 Putative RNA polymerase sigma factor n=1 Tax=Ped... 179 4e-44 UniRef50_Q2IU66 Sigma-24 (FecI-like) n=29 Tax=Rhizobiales RepID=... 179 4e-44 UniRef50_C1SKR1 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 179 5e-44 UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily ... 179 5e-44 UniRef50_Q1IQR2 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 179 5e-44 UniRef50_B1ZRM6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 7e-44 UniRef50_C4ZMF7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 7e-44 UniRef50_C5D220 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 9e-44 UniRef50_D2QZ03 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 9e-44 UniRef50_Q11IY6 RNA polymerase sigma factor n=8 Tax=Alphaproteob... 178 9e-44 UniRef50_Q73K99 RNA polymerase sigma-24 factor, putative n=1 Tax... 178 1e-43 UniRef50_A4CQ62 RNA polymerase sigma-70 factor, ECF subfamily pr... 178 1e-43 UniRef50_B9XGS8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 178 1e-43 UniRef50_D1CIE7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 177 1e-43 UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistip... 177 1e-43 UniRef50_Q0AXN3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 177 1e-43 UniRef50_UPI00016C361F RNA polymerase ECF-type sigma factor n=1 ... 177 1e-43 UniRef50_A4ARC6 RNA polymerase sigma-70 factor n=2 Tax=unclassif... 177 1e-43 UniRef50_C0Z4C2 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 177 2e-43 UniRef50_B4RD59 RNA polymerase sigma factor n=1 Tax=Phenylobacte... 177 2e-43 UniRef50_Q7NFE2 Glr3584 protein n=1 Tax=Gloeobacter violaceus Re... 177 2e-43 UniRef50_D0LYF8 RNA polymerase sigma factor n=1 Tax=Haliangium o... 177 2e-43 UniRef50_A4CGT5 RNA polymerase sigma-70 factor n=1 Tax=Robiginit... 177 2e-43 UniRef50_B8FW34 RNA polymerase, sigma-24 subunit, ECF subfamily ... 177 2e-43 UniRef50_C7PI60 RNA polymerase, sigma-24 subunit, ECF subfamily ... 177 2e-43 UniRef50_P66808 RNA polymerase sigma-E factor n=73 Tax=Actinobac... 176 2e-43 UniRef50_Q1AVA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 176 3e-43 UniRef50_B8I5U3 RNA polymerase sigma factor n=3 Tax=Clostridiale... 176 3e-43 UniRef50_Q5YXA9 Putative sigma factor n=1 Tax=Nocardia farcinica... 176 3e-43 UniRef50_C8WQW1 RNA polymerase sigma factor n=2 Tax=Alicyclobaci... 176 3e-43 UniRef50_A1ZJQ1 RNA polymerase sigma-70 factor, ECF subfamily n=... 176 4e-43 UniRef50_Q5X4Y5 Sigma factor RpoE (Sigma 24) n=5 Tax=Legionella ... 176 4e-43 UniRef50_D0LKU5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 176 4e-43 UniRef50_Q1D4D9 RNA polymerase sigma-70 factor, ECF subfamily n=... 176 4e-43 UniRef50_Q1AXP8 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 176 4e-43 UniRef50_Q4KKB3 RNA polymerase sigma-70 factor, ECF subfamily, p... 176 4e-43 UniRef50_C6XPB4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 176 5e-43 UniRef50_Q47W09 RNA polymerase sigma-70 factor, ECF subfamily n=... 175 5e-43 UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 6e-43 UniRef50_A7H7K8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 6e-43 UniRef50_A4U4L1 RNA polymerase sigma factor n=1 Tax=Magnetospiri... 175 7e-43 UniRef50_UPI000197305F RNA polymerase ECF-type sigma factor n=1 ... 175 7e-43 UniRef50_C8XA65 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 7e-43 UniRef50_A5CQL0 RNA polymerase sigma factor n=4 Tax=Actinomyceta... 175 8e-43 UniRef50_Q21P18 Sigma-70 region 2 n=1 Tax=Saccharophagus degrada... 175 8e-43 UniRef50_Q7UFL5 RNA polymerase sigma factor n=1 Tax=Rhodopirellu... 175 8e-43 UniRef50_B3DVU8 RNA polymerase sigma factor n=1 Tax=Methylacidip... 175 8e-43 UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostri... 175 8e-43 UniRef50_A5UPH8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 9e-43 UniRef50_A6C0F8 RNA polymerase sigma factor n=1 Tax=Planctomyces... 175 9e-43 UniRef50_D2R3P6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 175 9e-43 UniRef50_C1ABI4 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 175 9e-43 UniRef50_C1ZMC3 RNA polymerase sigma factor n=3 Tax=Planctomycet... 175 1e-42 UniRef50_A0LD14 RNA polymerase sigma factor n=1 Tax=Magnetococcu... 174 1e-42 UniRef50_B4V9J8 RNA polymerase sigma factor SigM n=8 Tax=Strepto... 174 1e-42 UniRef50_A4FAV7 Putative RNA polymerase sigma factor n=1 Tax=Sac... 174 1e-42 UniRef50_Q5NZC6 ECF-family RNA polymerase sigma factor n=1 Tax=A... 174 1e-42 UniRef50_C1AC29 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 174 1e-42 UniRef50_Q01NU7 RNA polymerase sigma factor n=1 Tax=Candidatus S... 174 1e-42 UniRef50_A8L8U8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 174 1e-42 UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira R... 174 1e-42 UniRef50_C6PS15 RNA polymerase, sigma-24 subunit, ECF subfamily ... 174 2e-42 UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostri... 174 2e-42 UniRef50_Q488H2 RNA polymerase sigma factor, sigma-70 family n=1... 174 2e-42 UniRef50_Q6MPU7 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 173 2e-42 UniRef50_Q21I12 Sigma-70 region 2 n=1 Tax=Saccharophagus degrada... 173 2e-42 UniRef50_Q0VMH1 Rna polymerase sigma-e factor (Sigma-24) n=2 Tax... 173 2e-42 UniRef50_A7BEQ0 Putative uncharacterized protein n=1 Tax=Actinom... 173 2e-42 UniRef50_Q67R01 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 173 2e-42 UniRef50_A9G8Q1 ECF-family RNA polymerase sigma factor n=1 Tax=S... 173 2e-42 UniRef50_B5JFS0 RNA polymerase sigma factor, sigma-70 family n=1... 173 3e-42 UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor... 173 3e-42 UniRef50_A8W1I0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 173 3e-42 UniRef50_C0A3E7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 173 3e-42 UniRef50_Q08PQ9 RNA polymerase sigma factor CarQ n=1 Tax=Stigmat... 173 3e-42 UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 173 3e-42 UniRef50_C3BA74 Putative uncharacterized protein n=3 Tax=Bacillu... 173 3e-42 UniRef50_A9WPF4 RNA polymerase sigma-E factor n=1 Tax=Renibacter... 173 4e-42 UniRef50_D0XTW0 RNA polymerase sigma factor n=1 Tax=Caulobacter ... 173 4e-42 UniRef50_C3KMI0 RNA polymerase sigma factor n=1 Tax=Rhizobium sp... 173 4e-42 UniRef50_Q3APD6 RNA polymerase sigma factor n=10 Tax=Chlorobiace... 172 5e-42 UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 172 5e-42 Sequences not found previously or not previously below threshold: >UniRef50_P0AGB8 RNA polymerase sigma-E factor n=237 Tax=Proteobacteria RepID=RPOE_ECO57 Length = 191 Score = 247 bits (632), Expect = 1e-64, Method: Composition-based stats. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA Sbjct: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN Sbjct: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA Sbjct: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 Query: 181 IDNKVQPLIRR 191 IDNKVQPLIRR Sbjct: 181 IDNKVQPLIRR 191 >UniRef50_A3DDU5 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Clostridium thermocellum RepID=A3DDU5_CLOTH Length = 220 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 65/188 (34%), Positives = 107/188 (56%), Gaps = 2/188 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S +++ L++R +KGD +AF L+ Q KV ++ R + + D ++ QE F+KAY++ Sbjct: 22 SMSSSEKELIKRAKKGDVEAFEQLIEGCQKKVFNIALRMLGNYDDASELAQEVFLKAYKS 81 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL-KEISNPE 119 + +F+GDS F TW+Y++ N + + + + + IE E + + PE Sbjct: 82 IKNFKGDSLFNTWIYKVTTNACLDEIRKRKNKKVVYLDEDIELGGNEIKRQIKDDSPGPE 141 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 EL++ V +I LPE+ R I LR++ G +YEEIA I+ CP GTV+SRI RAR+ Sbjct: 142 LKAEDNELKRAVMDSINMLPEEYRTVIVLRDIQGFTYEEIANIIKCPEGTVKSRINRARQ 201 Query: 180 AIDNKVQP 187 A+ +Q Sbjct: 202 ALKKILQQ 209 >UniRef50_B2A648 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A648_NATTJ Length = 206 Score = 232 bits (594), Expect = 4e-60, Method: Composition-based stats. Identities = 64/182 (35%), Positives = 106/182 (58%), Gaps = 2/182 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 D+ LV++ Q G AF LV +Y KV SL R+ + D D+ QEAFI+ Y +++ F Sbjct: 7 NDEFLVKQCQNGHLDAFEELVHKYHQKVYSLCYRFSGNHDDANDLAQEAFIRVYHSINKF 66 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFES-GGALKEISNPENLML 123 SAF TWLYR+ N + + + R+ S +E ++ E + NPE + Sbjct: 67 HFKSAFSTWLYRVTSNVCLDEMRKRKRKSSVSLDSPMETDDGELYFNLPDQKFNPELMAE 126 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +++++IV + I+ LP+D ++ + LRE++G SY+E+A +M+ VGTV+SR+ RAR + Sbjct: 127 RKDVQEIVHKAIQELPKDQKLTLLLREMEGFSYDEMAEVMNVSVGTVKSRLSRARNNLKE 186 Query: 184 KV 185 + Sbjct: 187 IL 188 >UniRef50_Q47WN8 RNA polymerase sigma factor n=20 Tax=Gammaproteobacteria RepID=Q47WN8_COLP3 Length = 208 Score = 230 bits (589), Expect = 1e-59, Method: Composition-based stats. Identities = 128/191 (67%), Positives = 166/191 (86%), Gaps = 1/191 (0%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 SE DQ LVERVQ+GD+ AFNLLV +YQHKVA+LVSRYV + DVPD+VQEAFIKAYRA Sbjct: 16 SEPNIDQQLVERVQRGDKNAFNLLVTKYQHKVANLVSRYVKNHSDVPDIVQEAFIKAYRA 75 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L +FRGDSAFYTWLYRIAVN AKN+ VA GR+PPS+DV+ +AE +++G AL+E ++PE Sbjct: 76 LPNFRGDSAFYTWLYRIAVNCAKNHSVALGRKPPSNDVEISDAELYDTGDALRENASPEK 135 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++L+ E+++++F T+ESLP+DLR+AI RE++GLSYEEIA IM+CPVGTVRSRIFRAR+A Sbjct: 136 ILLTAEIKKVIFSTMESLPDDLRLAINFREIEGLSYEEIATIMECPVGTVRSRIFRARDA 195 Query: 181 IDNKVQPLIRR 191 ID K++PL+++ Sbjct: 196 IDKKIRPLLQK 206 >UniRef50_B8D1S9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S9_HALOH Length = 195 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 2/188 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D+ ++ + G+++ F LV +YQ KV + R + + D D+ QEAFIK +R L F Sbjct: 5 SDEKIINMILAGEKELFARLVEKYQRKVYNTTYRMLGNSEDASDLTQEAFIKTFRNLKRF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-PENLML 123 RG ++F TWL+ I N ++ L + RR S + E +K+ S PE+L + Sbjct: 65 RGKASFSTWLFTITTNLCRDELRKRQRRSASPHFPDGQHFMSEDIENIKDNSKVPEDLYM 124 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E + R I LP D + I LR++ G SY+EI+ I+ P+GTV+SR+ RAR+++ Sbjct: 125 GRETMASIQRAINKLPADQKEVIVLRDIQGFSYKEISEIIGVPMGTVKSRLSRARKSLQK 184 Query: 184 KVQPLIRR 191 ++ + R Sbjct: 185 HLKNIEGR 192 >UniRef50_Q06198 RNA polymerase sigma-H factor n=265 Tax=cellular organisms RepID=RPSH_PSEAE Length = 193 Score = 229 bits (585), Expect = 4e-59, Method: Composition-based stats. Identities = 126/191 (65%), Positives = 153/191 (80%), Gaps = 1/191 (0%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 M Q DQ LVERVQ+GD++AF+LLV++YQHK+ L+ R+V + DV QEAFIKAYR Sbjct: 1 MLTQEQDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDAQEAQDVAQEAFIKAYR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FRGDSAFYTWLYRIA+NTAKN+LVA+GRRPP SDV A +AE FE ALK+I +PE Sbjct: 61 ALGNFRGDSAFYTWLYRIAINTAKNHLVARGRRPPDSDVTAEDAEFFEGDHALKDIESPE 120 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ML +E+ V +TI+ LPEDLR A+TLRE +GLSYE+IA +M CPVGTVRSRIFRARE Sbjct: 121 RAMLRDEIEATVHQTIQQLPEDLRTALTLREFEGLSYEDIATVMQCPVGTVRSRIFRARE 180 Query: 180 AIDNKVQPLIR 190 AID +QPL+R Sbjct: 181 AIDKALQPLLR 191 >UniRef50_UPI00017466F3 ECF-family RNA polymerase sigma factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017466F3 Length = 202 Score = 228 bits (582), Expect = 8e-59, Method: Composition-based stats. Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 2/183 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D LV R Q GD +AF+ LV RY+ KV + V + D D+ QEAFIKA+RAL SF+ Sbjct: 15 DSDLVRRAQAGDARAFDSLVTRYRGKVYGMCYHLVQNEQDAWDLAQEAFIKAWRALPSFK 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-PENLMLS 124 GD++FYTW+YRIA N+ ++L + D +A + + + P+ + + Sbjct: 75 GDASFYTWIYRIAHNSTYDWLRKRKIEGAGEFDDERQAGVAAGAETVPKGEHRPDEALKN 134 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 EL + + I+ L D R AI LRE++G SYEEIA IM+ +GTV SR+F AR+ + Sbjct: 135 RELGTRIQQAIDQLSPDHRTAILLREVEGFSYEEIAQIMESSMGTVMSRLFYARKKLQEL 194 Query: 185 VQP 187 ++ Sbjct: 195 LKD 197 >UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B9XS45_9BACT Length = 216 Score = 225 bits (576), Expect = 5e-58, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 + LVER + GD A++ LV RYQ ++ + V + D D+ QE+FIKA++AL SF Sbjct: 30 DEMQLVERARNGDMAAYDDLVRRYQERIYATVYHMTSNHEDANDLAQESFIKAFQALKSF 89 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVD-AIEAENFESGGALKEISNPENLML 123 +G S+FYTW+YRIAVN N+L + R S D AE+ AL P + Sbjct: 90 KGGSSFYTWIYRIAVNKTINFLKQRKNRAQMSLNDLDFNAEHDPDLVALISDKTPRRDIG 149 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EL++ + + L E R+ +TL ++ GLS+EEIA IMDC +GTVRSR+F AR+ + Sbjct: 150 LSELQEKLNAALLKLSEHHRLVVTLHDVQGLSHEEIAKIMDCNIGTVRSRLFYARQQLQA 209 Query: 184 KVQPLIR 190 + ++ Sbjct: 210 YLSDYLK 216 >UniRef50_Q2SL40 RNA polymerase sigma factor AlgU n=4 Tax=Proteobacteria RepID=Q2SL40_HAHCH Length = 222 Score = 223 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 115/187 (61%), Positives = 154/187 (82%), Gaps = 1/187 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 TDQ LVERVQ+GD++AF++LVV+YQ KV ++++RY+ +V DV QEAFIKAY+AL +F Sbjct: 32 TDQQLVERVQRGDKRAFDMLVVKYQSKVMAIIARYIRDHHEVMDVAQEAFIKAYKALANF 91 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG+SAFYTWLYRIA+N AKN+L+AQGRRPP DVDA +A +E G ALK+I +PE + Sbjct: 92 RGESAFYTWLYRIAINAAKNHLMAQGRRPPGEDVDADDAVLYEGGSALKDIDSPERQVHR 151 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ++++Q +F+ ++ LPEDLR A+TLRE DGLSYEEIA IM CPVGTVRSRIFRAR+A+D + Sbjct: 152 DQVKQAIFQALDELPEDLRSALTLREFDGLSYEEIAEIMQCPVGTVRSRIFRARDAVDAR 211 Query: 185 VQPLIRR 191 + P++ + Sbjct: 212 IAPMLEQ 218 >UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW59_9BACT Length = 213 Score = 222 bits (567), Expect = 6e-57, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 3/188 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D LV R Q GD AFN LV+RY+++ +++ V + D D+ Q+ F+KA+++++ F Sbjct: 24 DDLELVARSQAGDTSAFNELVIRYRNRAYAMIYNMVRNEQDAWDLAQDGFLKAWKSINRF 83 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN--PENLM 122 RG S+FYTWLYRI +N A + L + D I N G A S P + Sbjct: 84 RGQSSFYTWLYRILMNVAIDSLRKKQIEGGQEFDDQIGLHNIAPGAATAPKSEMEPAERI 143 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +E+RQ + I L + R AI +RE+DGL Y EIA M C +GTV SR+F AR+ + Sbjct: 144 SDKEIRQRIDEAIAKLSPEHRTAIVMREIDGLEYTEIAEQMGCSLGTVMSRLFYARKKLQ 203 Query: 183 NKVQPLIR 190 ++ + Sbjct: 204 ALLKDVYE 211 >UniRef50_C7IN25 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IN25_9CLOT Length = 198 Score = 221 bits (564), Expect = 1e-56, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 1/184 (0%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E++ + L+++ + GD AF L Y KV S+ R + + D + QE FIKA++ + Sbjct: 2 EKINENNLLQKARNGDVGAFEELTTEYYSKVYSICYRMLNNTEDAYEQAQETFIKAFKYI 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F+G+ A TWLYRIA N +++ + S + + E PE + Sbjct: 62 KDFKGNCAISTWLYRIATNVCLDFIRKHKNKKVISIEQNTFEDLQLKDSLVSENPGPEKV 121 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + +Q + ++ + E R+ I LR+ GLSY+EI+ M PVGTV+SRI RAR + Sbjct: 122 AETNAQKQAIKEAMDKMNEKNRLVIILRDFMGLSYDEISDTMKVPVGTVKSRINRARNEL 181 Query: 182 DNKV 185 + Sbjct: 182 RELL 185 >UniRef50_C0GIR4 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIR4_9FIRM Length = 209 Score = 219 bits (560), Expect = 3e-56, Method: Composition-based stats. Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 3/172 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + ++ LV R Q+GD A++ L+ Y+ KV +L R + D D+ QEAF+KA+RAL Sbjct: 2 DIKEKELVARCQRGDLSAYDELMKCYEQKVYALCFRMSGNHTDAQDLAQEAFLKAFRALP 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGG--ALKEISNPEN 120 SF+G S F TWLYRI NT + Q RRP +D + + +P + Sbjct: 62 SFKGQSQFSTWLYRIVTNTCLDERRRQARRPGLVSMDKPLDTDDGQIAVTLPDKGPDPLS 121 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 L+ EL+ + + LP R+ + +R+L+G SY+EIAA++D +GTV+S Sbjct: 122 EALNSELQAEIQELLSRLPAGQRIVVVMRDLEGYSYDEIAAVLDVNIGTVKS 173 >UniRef50_A5D0C6 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=3 Tax=Peptococcaceae RepID=A5D0C6_PELTS Length = 204 Score = 219 bits (560), Expect = 4e-56, Method: Composition-based stats. Identities = 70/189 (37%), Positives = 118/189 (62%), Gaps = 5/189 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D++LVER Q GD +AF +LV RY++KV ++ R++ + D D+ QEAF++ Y+AL FR Sbjct: 5 DEILVERSQNGDLEAFEMLVRRYENKVYTVAYRFLGNHADASDLAQEAFLRLYQALPRFR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE-ISNPENLMLS 124 G+S+F TWLYRI N ++ L + R S E+ ++ I +PE+ + Sbjct: 65 GESSFMTWLYRITANACRDELRRRQRNSTVSLDGENGLEHIQNYSLFSGYIPSPEDTVEK 124 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +EL ++V + S+ + R+ + +RE+ G++Y+EI+A+M+C +GTV+SR+ RAR A K Sbjct: 125 KELNELVQMCLNSISGEHRLILVMREIQGMTYDEISAVMNCSLGTVKSRLSRARRAFREK 184 Query: 185 ---VQPLIR 190 ++ L+ Sbjct: 185 FNGLKELME 193 >UniRef50_D0LU56 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU56_HALO1 Length = 216 Score = 217 bits (555), Expect = 1e-55, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 6/193 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + ++ LV+R + GD +AF L RY +V +L V + D DVVQE FIKA+R L Sbjct: 16 DASDERELVDRARDGDTEAFRALYQRYHRRVYALAYGVVQNKEDAMDVVQEGFIKAHRYL 75 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----- 116 D F G+S+FYTWLYRI +N + +++ R DAI ++ + Sbjct: 76 DRFEGNSSFYTWLYRIVMNLSIDHIRKHKRVRHVDFNDAISHGQDDAASEDSLLPRVLGQ 135 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 NP ++ +E+R+ + + L + R + +REL+G+SYEE+A M+C GT+ SR+F Sbjct: 136 NPGKSLVRKEIREQISAALAKLSDKHRAVLVMRELEGMSYEEMAQAMECSKGTIMSRLFH 195 Query: 177 AREAIDNKVQPLI 189 AR + + + Sbjct: 196 ARRNMQQHLLEYM 208 >UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alkaliphilus RepID=A6TSU8_ALKMQ Length = 201 Score = 217 bits (555), Expect = 1e-55, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 105/186 (56%), Gaps = 2/186 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 + L+E+ + GD ++F L++++Q K ++ R + + D DV QEA +KAYRA++ F+ Sbjct: 8 EATLIEKSKDGDSESFEKLILQHQKKAFNIAYRMLGNLEDANDVTQEALLKAYRAINRFQ 67 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL-KEISNPENLMLS 124 S+F TWLY I NT +++ + E E + + + + PE L+ Sbjct: 68 EKSSFSTWLYTIVTNTCVDFIRKNRKTKVVYLDREYEGEEGQYKREVYDDENGPEELLEK 127 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E+++++ I L + R I LR+++G SY EIA I+DC GT++SRI RAR + N Sbjct: 128 KEVQRLIHDAINLLNYEQRKVIILRDIEGFSYREIAEILDCAEGTIKSRINRARSNLKNL 187 Query: 185 VQPLIR 190 + IR Sbjct: 188 ITEKIR 193 >UniRef50_B8I3Y9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I3Y9_CLOCE Length = 197 Score = 216 bits (552), Expect = 3e-55, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 1/179 (0%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + L+ + + GD AF L+V Y KV ++ R + + D + QE FIKA++ + F+G Sbjct: 6 ENLLHKARNGDAGAFEELMVVYYSKVYNICYRMLNNTEDAYEQAQETFIKAFKYIKDFKG 65 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 + A YTWLYRIA N +Y+ +R S + + + +I PE + Sbjct: 66 NCAIYTWLYRIATNVCLDYIRKNKKRKEVSIEQSTFEDLQLKDSLVSDIPGPEKIAEDNA 125 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +Q + + + E R+ I LR+ GLSY+EI+ I+ PVGTV+SRI RAR + + Sbjct: 126 RKQAIRTAMTKMNEKNRLVIILRDFMGLSYDEISEIIKIPVGTVKSRISRARNELRELL 184 >UniRef50_Q45585 RNA polymerase sigma factor sigW n=30 Tax=Bacillales RepID=SIGW_BACSU Length = 187 Score = 216 bits (551), Expect = 4e-55, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 +++V+KGDQ AF +V Y+ K+ L R + + + D+ QEAFI+AY +DSF + Sbjct: 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRK 68 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F TWLYRIA N + + + A + + PE+ ++S EL Sbjct: 69 FSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSN 128 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 + + I LP+ R I L+ +D LS EI I++ PVGTV++RI R REA+ +++ L Sbjct: 129 TIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL 187 >UniRef50_Q67R63 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67R63_SYMTH Length = 208 Score = 216 bits (551), Expect = 4e-55, Method: Composition-based stats. Identities = 73/190 (38%), Positives = 115/190 (60%), Gaps = 3/190 (1%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS+ L D++LVER ++GD +AF L+ +++ V ++ R + D D+ QEAFI+AY Sbjct: 1 MSKSL-DELLVERAKRGDVEAFEQLISQHEKTVYNIAYRLTGNHEDASDLAQEAFIRAYS 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-P 118 +L FRGDS+F TWLYRI N + L + R+ + A+E E+ E + + ++ P Sbjct: 60 SLADFRGDSSFATWLYRIVNNVCLDELRRRKRQKVTYLDQAVEMEDGEVSRQIADTADGP 119 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E + EL++++ +I L E+ R+ + +REL G SY EIA +D +GTV+SR+ RAR Sbjct: 120 EQALERVELQRLIQESILQLDEEYRVVLVMRELQGYSYNEIAEALDLNLGTVKSRLNRAR 179 Query: 179 EAIDNKVQPL 188 A+ K L Sbjct: 180 SALKEKFMSL 189 >UniRef50_Q1CXJ7 RNA polymerase sigma-E factor n=6 Tax=Cystobacterineae RepID=Q1CXJ7_MYXXD Length = 211 Score = 215 bits (549), Expect = 7e-55, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 5/190 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D LV+RV+ GDQ+AF LLV RYQ KV ++ + + DV QEAF+K Y+ LD F Sbjct: 11 DDLTLVKRVRTGDQRAFKLLVERYQRKVYAVALGMLKDKEEAMDVSQEAFVKVYKYLDHF 70 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----NPEN 120 +GDS+FYTWLYRI VN + + +G + D ++ + S NP+ Sbjct: 71 KGDSSFYTWLYRITVNICIDVIRKRGGGGEVVEFDESQSVDLSEARIGALGSRLGTNPQK 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L EL + + + ++PE R + LRE++G+SY+++A +D P GTV SR+F AR Sbjct: 131 SALRRELAEKIQEALATVPEKHRAILLLREIEGMSYDDLARTLDIPKGTVMSRLFHARAK 190 Query: 181 IDNKVQPLIR 190 + + + Sbjct: 191 VQKILSEYLE 200 >UniRef50_B1ZTI0 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Verrucomicrobia RepID=B1ZTI0_OPITP Length = 211 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 69/192 (35%), Positives = 115/192 (59%), Gaps = 3/192 (1%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E +D +V +VQ G+ F+ LV +Y+ ++ ++ + D D+ Q+AFIKA++++ Sbjct: 20 EADSDLAIVRQVQAGEVAQFDQLVTKYRARLYGVIYHLTSNREDAADLTQDAFIKAFQSI 79 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSD--VDAIEAENFESGGALKEISNPE 119 + F+G S+F+TWLYRIAVN+ +L Q R S +D + E AL + + + Sbjct: 80 NRFQGQSSFFTWLYRIAVNSTLTHLRKQRLRTFFSFEKIDEEDDVAKEVVAALTDATGAD 139 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + EL++ + ++ L R ITL E+DGLS++EIA +MDC VGTVRSR+ A++ Sbjct: 140 RETFAHELQEKLNEAMQKLSIKHRTVITLFEIDGLSHQEIAEVMDCSVGTVRSRLHYAKQ 199 Query: 180 AIDNKVQPLIRR 191 + +++Q IRR Sbjct: 200 LLQSELQSYIRR 211 >UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHE6_MOOTA Length = 204 Score = 212 bits (542), Expect = 4e-54, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +D+ L+ R + GD +AF LLV RYQ + ++ R++ + D D QEA ++A++ L +F Sbjct: 3 SDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLAAF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG +F TWL I N ++ L RRP S + +E + ++++PE + L+ Sbjct: 63 RGQCSFKTWLQHIIANVCRDELRRLKRRPTLSLDNLLETGGGFRELSAGKVTSPEEVFLT 122 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E + R I++L + R+ + +R+L G SYEEIA+ + CPVGTV+SR+ RAR + Sbjct: 123 REGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASHLGCPVGTVKSRLSRARHFLRQH 182 Query: 185 V 185 + Sbjct: 183 L 183 >UniRef50_Q67KY4 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KY4_SYMTH Length = 198 Score = 212 bits (541), Expect = 5e-54, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 2/185 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 LTD+ LVER Q+GD+ A L+ RY+ + +L R + + D D QEA ++ L + Sbjct: 4 LTDEQLVERAQEGDRCALGELISRYEQRTYNLAYRLMGNHADACDAAQEALVRVCVRLHN 63 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE-AENFESGGALKEISNPENLM 122 FRGDS F TWLYR+ NT + L +GR +S +A+ E A+ + P Sbjct: 64 FRGDSQFSTWLYRVVTNTCLDELRRRGRTRCASLDEAMPLDEGSVPRQAVDDSDGPVEYA 123 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 E++ V R I LP D R+ + LR+L LSY+EIA ++ +GT++SR+ RAR+A+ Sbjct: 124 ERHEVQAAVQRAIGRLPYDYRVVVILRDLHNLSYQEIATVLGTTLGTIKSRLHRARQALR 183 Query: 183 NKVQP 187 ++ Sbjct: 184 CIIED 188 >UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=Myxococcales RepID=A9FFY4_SORC5 Length = 292 Score = 212 bits (541), Expect = 6e-54, Method: Composition-based stats. Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 6/189 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + + R+ D+ AFN LV+ Y+ +V +LV R + D DV QE F++ ++A+D FR Sbjct: 96 EAQFIARLVARDESAFNELVIMYERRVFALVYRMLGRRDEAEDVSQEVFVQVFKAIDQFR 155 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK-----EISNPEN 120 G+S TW+YRIAVN KN RR + D A K ++S P+ Sbjct: 156 GESKLSTWIYRIAVNLCKNRTKYLSRRHAGAQDDVDAMAERVPLSAAKGVSVGDVSRPDE 215 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L+ +L +V R I L + R A+ LR+++ +SYEEIA++ P GTV+SRI RAR Sbjct: 216 LVEGMQLEAVVKRAIGQLDPEFREALILRDVEDMSYEEIASVTGLPDGTVKSRIHRARGQ 275 Query: 181 IDNKVQPLI 189 + V+ ++ Sbjct: 276 LRALVEKMM 284 >UniRef50_UPI00016939CD RNA polymerase ECF-type sigma factor n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939CD Length = 202 Score = 211 bits (539), Expect = 9e-54, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 102/183 (55%), Gaps = 5/183 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 EQLTD+ VE++++G +A+ LV R+++ V +L+ R V + D+ QE F+KAYR+L Sbjct: 2 EQLTDEEWVEQIRQGHAEAYRYLVERHKNYVYTLIYRMVGHRETAEDLSQEVFLKAYRSL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 +RG++ F TWLYR+ N +YL + RRP D ++ +L PE Sbjct: 62 AQYRGEAKFTTWLYRLTTNLVTDYLRERKRRPMEVWADKVKN----WFASLDPDKGPEEQ 117 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++ E R + + LPE R+ ++L SY+EI+ I+ PV TV +R++R + + Sbjct: 118 VILNEQRDALHEALLKLPEKYRIVLSLYHFQQFSYQEISDILQVPVKTVETRLYRGKSML 177 Query: 182 DNK 184 K Sbjct: 178 KQK 180 >UniRef50_A4BBJ0 RNA polymerase sigma factor n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ0_9GAMM Length = 203 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 104/191 (54%), Positives = 139/191 (72%), Gaps = 2/191 (1%) Query: 1 MSEQLT-DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDV-PDVVQEAFIKAY 58 M+E + DQ+LV++ QKGD +AF+LLV++YQHKVAS+VSR V D D+VQEAF+KAY Sbjct: 1 MTESVDVDQLLVQKAQKGDSRAFDLLVLKYQHKVASVVSRLVNEPDTIEDIVQEAFVKAY 60 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118 RAL FRGDSAF+TWLYRIA NTAKN+L RRP D E +S +L+E P Sbjct: 61 RALPGFRGDSAFFTWLYRIATNTAKNHLETLSRRPSYRGQDIDEVTLVDSPASLREFDTP 120 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + L+ +L Q + T+ LPEDLR+A+TLRE +G+SY+EI+ IM+ P+GTVRSRIFRAR Sbjct: 121 DGLLARGQLEQRLQSTLSELPEDLRVALTLREFEGMSYQEISTIMETPIGTVRSRIFRAR 180 Query: 179 EAIDNKVQPLI 189 E I+ ++ ++ Sbjct: 181 EIIERELHSVM 191 >UniRef50_B3DXV9 DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXV9_METI4 Length = 204 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSR-YVPSGDVPDVVQEAFIKAYRALDSF 64 TDQ L+ R++ G+ +AF++LV RYQ ++ ++ + D DV+ E F+KAY+ + F Sbjct: 14 TDQELILRMKSGELEAFDILVERYQKRLYRVIYGVLLHHEDTNDVLMETFLKAYKNIGGF 73 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGR--RPPSSDVDAIEAENFESGGALKEISNPENLM 122 R ++FYTW+YRIAVNTA ++ +P D E + + + + Sbjct: 74 RIGASFYTWIYRIAVNTAISFKRKSKFTPQPFPHFSDEEEGQVEKEFVDYRSGEQAVKQI 133 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +EL +I+ + L E R + L +L+ LS+ EIA IM C GT+RSR+F A + + Sbjct: 134 EMKELGKILNEALSKLSEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIRSRLFYAHKQLQ 193 Query: 183 NKVQ 186 ++ Sbjct: 194 KILK 197 >UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESI6_SORC5 Length = 266 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 2/180 (1%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 L+ER QKGDQ AF LV R+Q + ++ V D ++VQ+AF++ Y+ L SF+G S Sbjct: 69 LIERAQKGDQAAFRSLVERHQRRAFAIAMGLVRDENDARELVQDAFLRVYKGLGSFQGGS 128 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRR-PPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 +F+TWLYRI N A + + GRR + A + ++ A + ++P N++ E+ Sbjct: 129 SFFTWLYRIVTNLAIDLMRKPGRRDLELQENQAADEQSDFPLVARIDGADPLNVVRRREI 188 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 + +++LP R I +RE++G+SYEE+A M GT+ SR+F AR+ + + Sbjct: 189 AGRIQAALDALPPYHRGVILMREVEGMSYEEMAQAMGVSKGTIMSRLFHARQKLQRALAD 248 >UniRef50_D1CD34 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD34_THET1 Length = 189 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 103/186 (55%), Gaps = 3/186 (1%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 E D LV R Q+GD AFN LV RYQ ++ +L RY+ DV QEAF+ A++AL Sbjct: 2 EIPNDDELVRRAQEGDLDAFNKLVERYQVQMYNLAIRYIGDPFLAEDVTQEAFVAAWKAL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 SFRG S F +WL+RI +N A + L + + +D I E E PE Sbjct: 62 GSFRGGS-FRSWLFRILINEAHD-LRRRHVKRTPGSLDQILEELGEFPQMGDPHIGPEET 119 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +S + + + I+ LPE+ ++ + L ++ GLSY+E+A + P+GTV+SR+FR R + Sbjct: 120 AVSAATFKAIEKCIQKLPEEYKLVLLLVDVQGLSYDEVATALRLPLGTVKSRLFRGRCML 179 Query: 182 DNKVQP 187 ++ Sbjct: 180 RELLKD 185 >UniRef50_B9XG21 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XG21_9BACT Length = 200 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 1/184 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +D+ LV +KG+ AF LV R++ K+ + + + + D+ QEA++K+++ L F Sbjct: 11 SDEQLVRAAKKGEMAAFEELVARHRDKIYARAFSMMRNEEEAVDLCQEAWVKSWQRLQQF 70 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 +GDS+F TW+ RI +N + L + R+ S + E NP + Sbjct: 71 QGDSSFGTWMTRIVINLCLDQLRKRKRQRTESIEEMSEESGGVERQMPTVTINPTERLER 130 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ELR+ + + + L + R + L E + + Y+EIA M C +GTV SR+F AR + Sbjct: 131 AELRKRIDQALSQLSHEHRTVLVLHEFEEMEYKEIAKTMGCSIGTVMSRLFYARRKMAVL 190 Query: 185 VQPL 188 + L Sbjct: 191 LANL 194 >UniRef50_B9XPW8 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514 RepID=B9XPW8_9BACT Length = 205 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 5/189 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D L+ RV++GD AF LV +Y+ V ++V R + + D+ Q FI+ Y++ + Sbjct: 8 DVALMLRVKRGDSDAFAELVEKYKQPVINVVFRILRDATEAEDLAQNVFIQVYKSAHRYE 67 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS----NPENL 121 + F TWL+ IA N N + + R P S + E + + + + Sbjct: 68 VSAKFSTWLFTIARNLCLNEIRRRSRHPADSLEANFTNSDNEDLPSRQFEDVKVYSAPDT 127 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +L EL V + ++ LPE+ R AI L + +SYEEIA ++ C + +S I R RE + Sbjct: 128 LLQHELEHEVEQALKELPENQRTAILLCRQEDMSYEEIAKVIGCSLSATKSLIHRGRETL 187 Query: 182 DNKVQPLIR 190 K++P ++ Sbjct: 188 KQKLKPYLQ 196 >UniRef50_B4D0E9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0E9_9BACT Length = 195 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 5/193 (2%) Query: 1 MSEQLT---DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIK 56 M + L+ D L+ R Q G+ AF+ LVV+Y ++ LV + D D++Q+ + K Sbjct: 1 MQDDLSRKQDDELIARTQAGEAAAFDELVVKYSPRLYGLVYNMTSNHEDTNDLMQDIWSK 60 Query: 57 AYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE-SGGALKEI 115 AYR++ FRG S+FYTW++ I VN N+L +GRR S D + L Sbjct: 61 AYRSIAGFRGKSSFYTWIHSIGVNMTINFLKKRGRRYTLSLDDIDSNVQHDKEFIELTAT 120 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 S P EL++ + ++ L D R +T+ ++ G+ + EIA I+ GTVRSR+F Sbjct: 121 STPVREADLSELQKRLNEAMQKLSHDHRAVVTMFDIQGMPHAEIAKILGISEGTVRSRLF 180 Query: 176 RAREAIDNKVQPL 188 A + N + Sbjct: 181 YAHRQLQNFLTEF 193 >UniRef50_C9RAI8 RNA polymerase sigma factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RAI8_AMMDK Length = 215 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 4/184 (2%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDS 68 L+E+ + G +AF LV+ YQ +V L R + D D+ QE F++AYR L SFR ++ Sbjct: 7 LLEQARAGSHQAFEELVLAYQDRVYGLCYRLTGNHDDAEDLAQEVFVRAYRGLRSFRAEA 66 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN--PENLMLSEE 126 F T+L+RIAVN N+ + S D + + E + + ++ PE E Sbjct: 67 DFGTYLHRIAVNLFLNH-RRKANHNTLSLDDPVSVPDGELPRQVADGNHLHPEEEAEKRE 125 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++V R + SL + R + LRE++ +SYEEIAA++ GTV+SR+ RAR A+ + Sbjct: 126 FIRLVRRALNSLSREHRAVLVLREMEEMSYEEIAAVLGVAPGTVKSRLNRARAALQKALI 185 Query: 187 PLIR 190 + R Sbjct: 186 KMAR 189 >UniRef50_B5YDF0 RNA polymerase sigma-E factor n=2 Tax=Dictyoglomus RepID=B5YDF0_DICT6 Length = 223 Score = 206 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +DQ L+ ++ GD++AFN+LV RY+ KV +++ + + D+ D+ QE FIK ++ L+ F Sbjct: 34 SDQSLISLIKNGDKEAFNILVKRYEKKVLNILYLQLGNIPDLEDLAQEVFIKVFKNLNRF 93 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG++ F TW+YRI +N A +Y + + E+ + +P +++ Sbjct: 94 RGEAKFSTWIYRITINVAHDYKRKFKESYSLDEPIGEDEEDTFEKVISSDEEDPLSIVEK 153 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E++++ + + I+ LP++ + + LRE +GLSYEEI+ I+ CP+GTV SR++RAR Sbjct: 154 EDIKKKLHKLIKELPKEYQEVLILREYEGLSYEEISEILRCPIGTVESRLYRAR 207 >UniRef50_Q0AVE0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVE0_SYNWW Length = 193 Score = 206 bits (525), Expect = 4e-52, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 105/183 (57%), Gaps = 4/183 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 ++Q LV++ +GD +AF LV++YQ+KV +L RY+ + D D+ QE F+KA+R+L +F Sbjct: 3 SEQELVKKSMEGDTQAFEKLVLQYQNKVYALSFRYMGNEDDAYDMSQEVFLKAFRSLKTF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE---NFESGGALKEISNPENL 121 +G+S+F TW++RI N + L + RR +D + + + + Sbjct: 63 KGNSSFGTWIFRITTNVCLDELRRRKRRIVPLSLDEAAVTSRGSEVEREIVDPSPPVDRV 122 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +EL Q + ++ + + + I LR+ LSYE+IA +++C VGTV+SR+ RAR + Sbjct: 123 YEQKELSQYIQGLLDQMKPEHKAVIILRDSMDLSYEQIAYVLNCSVGTVKSRLSRARSIL 182 Query: 182 DNK 184 + Sbjct: 183 RKQ 185 >UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNI5_AKKM8 Length = 199 Score = 205 bits (523), Expect = 6e-52, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 4/190 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 L D LV R ++GD +AF+ LV+R+ K+ + + + + D D+ QEAF KAYRAL Sbjct: 9 TLEDTELVARAREGDSRAFDELVIRHSRKLHATLYQMTDNYDDAYDIAQEAFSKAYRALR 68 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESG---GALKEISNPE 119 F G SAFYTWL+ IAVN A+N+L + RR S D ++ E + ++PE Sbjct: 69 YFNGQSAFYTWLHSIAVNHARNFLKKRNRRMTYSLDDDEYGDHTEKDMNMADETDGADPE 128 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 EL+ + ++ L R + L ++ GL++ EI+A++ GT+RSR+ A + Sbjct: 129 RRTHLNELQLKINEALKKLSTKHREVVVLHDVKGLNHTEISALLGISEGTLRSRLHYAHK 188 Query: 180 AIDNKVQPLI 189 + + + Sbjct: 189 ELQGLLAEYL 198 >UniRef50_Q1INR3 Sigma-24, ECF subfamily n=3 Tax=cellular organisms RepID=Q1INR3_ACIBL Length = 202 Score = 205 bits (522), Expect = 8e-52, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 107/187 (57%), Gaps = 4/187 (2%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 +S +T+ +ER + GD ++F L ++ +V SL R + + D+ QEAF++ +R Sbjct: 8 LSTGITEAEAIERAKNGDPESFEALYGLHKRRVYSLCLRMTGNTAEAEDLTQEAFLQLFR 67 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + +FRG+SAF TWL+R+AVN +L +G P S +++E + + G K+I + Sbjct: 68 KIATFRGESAFSTWLHRLAVNVVLMHLRKKGL-PEVSLEESMEPQQED--GPKKDIGARD 124 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 N++ R + R IESLP R+ L +++G + EIA +M C +G +S++ +AR Sbjct: 125 NVLAGSIDRVNLGRAIESLPPGYRIIFVLHDVEGYEHNEIAEMMGCSIGNSKSQLHKARM 184 Query: 180 AIDNKVQ 186 + + ++ Sbjct: 185 KLRDLLR 191 >UniRef50_A9BNK1 RNA polymerase sigma factor n=12 Tax=Proteobacteria RepID=A9BNK1_DELAS Length = 223 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 96/195 (49%), Positives = 128/195 (65%), Gaps = 5/195 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 S +D LVER GD +AF LLV++YQ ++ L+ R V D VPD+ QE FI+AYRA Sbjct: 23 SSADSDLALVERTNAGDMRAFELLVIKYQRRIERLIGRMVRDVDLVPDIAQETFIRAYRA 82 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L FRGD+ FYTWLYRIAVNTAK L+ R P ++ ++ + + + E Sbjct: 83 LHQFRGDAQFYTWLYRIAVNTAKKALLDMKRSPLITESALHNGDDDDETSRVSQELTTEE 142 Query: 121 L----MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 + ++E+ Q V +E+LPEDLR A+TLRE++GLSYEEI+ M CP+GTVRSRIFR Sbjct: 143 TPETILAAQEIAQAVNAAMEALPEDLRQAVTLREIEGLSYEEISNAMGCPIGTVRSRIFR 202 Query: 177 AREAIDNKVQPLIRR 191 AREAI +V+PL+ R Sbjct: 203 AREAISARVKPLLER 217 >UniRef50_Q2RYX7 Extracytoplasmic function alternative sigma factor n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYX7_SALRD Length = 192 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 1/186 (0%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 ++D+ L+ + Q G +AFN+LV RY ++ + R++ D++QE F++ +R S Sbjct: 1 MSDEDLMSQFQAGTVEAFNILVERYSDRLMQYLYRFLGDKKRCEDLLQETFLRVHRNRHS 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 +R + F TWLY IA N A++ + RR S E +P+ Sbjct: 61 YRRIAKFSTWLYTIAGNLARSEYRKRKRRRMQSIQSVNRDNEEYEMEIPDESFSPDKHAE 120 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 S + + +P R + LR++ L+Y+EIA I P+GTV+SRI R R + Sbjct: 121 STIQDHYIQEAMNEIPPAFREVVVLRDIQQLAYDEIAEITGLPMGTVKSRINRGRTKLQA 180 Query: 184 KVQPLI 189 +Q + Sbjct: 181 LLQDVY 186 >UniRef50_A4A074 RNA polymerase sigma factor, sigma-70 family protein n=3 Tax=Bacteria RepID=A4A074_9PLAN Length = 204 Score = 202 bits (515), Expect = 5e-51, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 4/190 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSR-YVPSGDVPDVVQEAFIKAYRALDS 63 +T+ LV+ +Q GD AF LV Y ++ ++ R D D +Q+AF+ A+R++ Sbjct: 13 VTEAELVQGLQSGDPAAFERLVRDYSGRLLAVARRFLTQEQDAQDALQDAFLSAFRSISR 72 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE---AENFESGGALKEISNPEN 120 F G+S TWL+RI VN + L + R+P D + G + Sbjct: 73 FEGNSQLSTWLHRIVVNASLMKLRTRRRKPEKPIDDLLPQFSGNGHRDGHEPAWAVTIDT 132 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + E+R++V I LPE R + LR+++ +S EE A +++ G V++R+ RAR+A Sbjct: 133 AVNDREIRELVRTKIAELPESYRTVLLLRDIEQMSTEETAEVLELTPGAVKTRLHRARQA 192 Query: 181 IDNKVQPLIR 190 + + P ++ Sbjct: 193 LKTLLDPHMQ 202 >UniRef50_A4GHT6 RNA polymerase sigma-70 factor n=1 Tax=uncultured marine bacterium EB0_39H12 RepID=A4GHT6_9BACT Length = 211 Score = 202 bits (515), Expect = 5e-51, Method: Composition-based stats. Identities = 80/190 (42%), Positives = 127/190 (66%), Gaps = 3/190 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S + D LV RV+ GD +AF+LLV++YQ ++ S ++ D+VQ++FIKA+++ Sbjct: 13 SNKDIDLALVRRVKAGDYRAFDLLVIKYQSRLVSTALKFSKDLQIAEDIVQDSFIKAFKS 72 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 ++SFR DSAFYTW+YRI VNTAKN+LV++ R+ D + + E E P+ Sbjct: 73 INSFREDSAFYTWVYRITVNTAKNFLVSKKRKGELLATDISDDGSLEIDSL--ETDTPDG 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ + EL++I+ ++ L E+ + A+TLRE +GLSYE+I+ I++CPVGTVRSRIFR RE Sbjct: 131 ILKANELKEILLDSLNRLGEETKTALTLREFEGLSYEQISKIVNCPVGTVRSRIFRGREV 190 Query: 181 IDNKVQPLIR 190 ++ ++ + Sbjct: 191 LEETIKKYKQ 200 >UniRef50_B3QYW7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QYW7_CHLT3 Length = 317 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 108/192 (56%), Gaps = 5/192 (2%) Query: 4 QLTDQVLVERVQKGDQ----KAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAY 58 +L D L++++ GD +A+ L+ +Y+ ++ +L+ + + + +V D+VQE F KA+ Sbjct: 124 RLEDYALIDQICDGDPHKRDQAYKRLLNKYRGQIFNLILKIIHNQNEVEDLVQETFSKAF 183 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118 ++++F + AF TWLYRIA N++ +YL + + S D ++ + P Sbjct: 184 NSIENFNKEYAFSTWLYRIATNSSIDYLRKRRLKTYSLDNPITTKDDEYTIEIPDSSEEP 243 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 ++ + +V I++LP R I +R L +YEEIAA +D P+GTV++ IFRAR Sbjct: 244 GKNIMQSQRDALVRSAIKNLPPKYRKVIEMRHLQERTYEEIAADLDIPLGTVKAHIFRAR 303 Query: 179 EAIDNKVQPLIR 190 E + ++ +R Sbjct: 304 EMLYKMLRDKLR 315 >UniRef50_Q01QB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QB2_SOLUE Length = 205 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 2/187 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + TD V R + GD AF +LV R+ + L R + D DVVQE+F++AY+ L Sbjct: 16 ECTDLEYVTRARAGDTDAFRVLVERHSRALFRLAFRMTGNQQDGEDVVQESFLRAYKQLA 75 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F ++F TWLYRIAVN + + + ++ RR + E E+ + P+ + Sbjct: 76 KFDERASFGTWLYRIAVNCSLDLVRSRKRRNEHMAPEDSEMED-PVLLLPSKDPTPDRMA 134 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +S ++R+ V + L R A LR +G+ E+++ ++ C G + +FRA + + Sbjct: 135 MSGQVRERVADAMNELSASERTAFVLRHFEGMCIEDVSRVLGCQPGAAKHSVFRAVQKLR 194 Query: 183 NKVQPLI 189 ++P + Sbjct: 195 RALEPHM 201 >UniRef50_B3TA07 Putative Sigma-70 region 2 n=1 Tax=uncultured marine microorganism HF4000_APKG8C21 RepID=B3TA07_9ZZZZ Length = 211 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 72/188 (38%), Positives = 97/188 (51%), Gaps = 5/188 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 S D L+ R Q GDQ AFNL+V RYQ V +L +R + D+ QE FI AYRA Sbjct: 16 SMHQDDAELIGRTQGGDQAAFNLIVERYQSNVYNLSARILGDRTAAEDITQETFISAYRA 75 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + FRG S WL RIA N + +++ A RRP S ++ F +PE Sbjct: 76 ISRFRGGS-LRAWLLRIASNHSYDWIRASRRRPQVSLDQSLLNPGF---SPPSTGPSPEQ 131 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L ELR + R I +LP D R + L ++ G+SYEE A +GTV+SR+ RAR Sbjct: 132 EALRSELRVELQRAILTLPPDQRTTLVLIDVQGMSYEETAEATRASIGTVKSRMSRARSR 191 Query: 181 IDNKVQPL 188 + N + Sbjct: 192 VRNHLLQH 199 >UniRef50_A6NW06 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW06_9BACE Length = 198 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 2/182 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 ++ LV R ++GDQ+AF LV Q ++ +L R S D D+ QEAF+ A+R LD F Sbjct: 3 NERELVARAKRGDQEAFGALVEANQGRIYNLTLRMTGSPEDALDLSQEAFLNAWRGLDKF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI-SNPENLML 123 +GDS+F TWLYR+A N ++L + RR S +++ E E L + +PE + Sbjct: 63 QGDSSFSTWLYRLASNVCIDFLRREKRRKDISMTVSLDDEEEERQAELPDHRHSPEREVE 122 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ELR+ + R + SL E+ R + +REL G+SY EI A++ GTV+SRI RAR A+ Sbjct: 123 RRELREDIRRGLMSLSEEHRQVLVMRELSGMSYAEIGAVLRLEEGTVKSRIARARVALRK 182 Query: 184 KV 185 + Sbjct: 183 IL 184 >UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RFZ5_MOOTA Length = 200 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 93/172 (54%), Gaps = 3/172 (1%) Query: 22 FNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 F LVV YQ KV +L + + D D+ QE F++AY+ LD FR ++ TWL+RI VN Sbjct: 18 FEELVVNYQDKVYNLSYQLTGNHADAQDLAQEVFVRAYQGLDKFRNEADPGTWLHRITVN 77 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFE-SGGALKEISNPENLMLSEELRQIVFRTIESLP 139 N R P S + E + +P +L+ EL+ V + LP Sbjct: 78 LYLNLRRKITRHPVVSLDAPLSTAEGEVTREVAAAGGDPVDLVEEMELKGFVRSALNQLP 137 Query: 140 EDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK-VQPLIR 190 + R A+ LREL G SYEEIA+I+ C +GTV+SR+ RAR+A+ K ++ + Sbjct: 138 PEYRTALVLRELQGYSYEEIASILGCSLGTVKSRLNRARQAMKEKVLRQMAE 189 >UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T39_SYMTH Length = 210 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 90/186 (48%), Gaps = 3/186 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + L+ R Q GD++AF L Y+ V V + DVVQE F+K +R++ +F+ Sbjct: 5 ELDLIARCQAGDRQAFEELFTFYRDDVFRFAYLVVRDANLAQDVVQETFLKVFRSIANFQ 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 S+F +WLYR+AVN A L RR A A + PE +L Sbjct: 65 FRSSFKSWLYRVAVNEAITLLRR--RRIKEELDPAPGAIQEHQRDRVDRAWQPEEAVLDS 122 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E R+++ I L R I L+ S EIAA++ CP GTV+SR+ RARE + + + Sbjct: 123 EERRLLHVAIGRLDPVHRTVIVLKYFHEFSDTEIAAVIGCPPGTVKSRLHRARELLRHHM 182 Query: 186 QPLIRR 191 R Sbjct: 183 ARQAGR 188 >UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C377D Length = 245 Score = 199 bits (508), Expect = 3e-50, Method: Composition-based stats. Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 6/192 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 MS+ D+ L+ G + AF LV RYQ ++ + R V S D DVVQ+AF+ AY+ Sbjct: 1 MSD--DDRRLIAECLGGQRDAFGTLVSRYQTRLYNSALRLVNSPEDAADVVQDAFLSAYQ 58 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL SF+GD+ F+TWLYRIA N A + + PS ++ + E P Sbjct: 59 ALSSFKGDAEFFTWLYRIAFNIAVSLKRKRR---PSVSLENYSQQTGLDPDDPSEYVKPS 115 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + E + + I L + R + L+++DGL YE+IA + P+GT+RSR+ RAR Sbjct: 116 AALERTEDERQLHGAIARLSSEHREVLLLKDIDGLKYEDIAEALGVPIGTIRSRLHRARL 175 Query: 180 AIDNKVQPLIRR 191 + + + R Sbjct: 176 ELRDLLAAPDER 187 >UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8Z5_9BACT Length = 238 Score = 198 bits (506), Expect = 6e-50, Method: Composition-based stats. Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 6/185 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D++LV+R + GD AF+ +V RY ++ ++V + + + D +V Q+AFI+A+R L +FR Sbjct: 49 DRMLVDRFKDGDASAFDEMVSRYWDRIYAVVHQLLRNHQDAEEVTQDAFIRAHRGLVNFR 108 Query: 66 GDSAFYTWLYRIAVNTAKN---YLVAQGRRPPSSDVDAIEAENFESGGA--LKEISNPEN 120 GDSAF TWLY+IA N A+N Y + R S + ++N + +P++ Sbjct: 109 GDSAFSTWLYQIATNLARNRYWYWWRRKRDKTVSFDQPVSSDNETPLSEIYAAPVESPDD 168 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +++E V +E L R + LR + LSYEEI I+ VGTV+SRI RAR+ Sbjct: 169 ITVTQEFVDRVASGMEKLNAKHREILILRNVKNLSYEEIGTILGISVGTVKSRIARARDN 228 Query: 181 IDNKV 185 + + Sbjct: 229 LRATM 233 >UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6 Tax=Chloroflexi (class) RepID=A9WDI9_CHLAA Length = 193 Score = 198 bits (505), Expect = 7e-50, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 10/189 (5%) Query: 1 MSE-QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAY 58 MSE Q + LV R GDQ A +V RY + + R + + D VQE F++A+ Sbjct: 1 MSELQPDETELVARACAGDQSACATIVQRYTGVLYNQAYRMLGDAFEAEDAVQEVFLRAF 60 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118 R L S+ TWL I N + L + + + A P Sbjct: 61 RNLQSYDPSRRLVTWLLTIGSNYCIDRLRRRRFNWLTLEDVAFW--------LPSTQPGP 112 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E L +++V R ++ LP R LR LSYEEI ++ TV++R+ RAR Sbjct: 113 ERSALQRAQQEVVQRALQRLPVTYRGVTVLRYWYDLSYEEIGQVLGLTEATVKTRLHRAR 172 Query: 179 EAIDNKVQP 187 + + + Sbjct: 173 KMLQEALAA 181 >UniRef50_A1W8K1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Comamonadaceae RepID=A1W8K1_ACISJ Length = 222 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 7/183 (3%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 L + + R Q+G+ AF+ LV RYQ ++ + R S D ++ QE F+ AY+AL Sbjct: 44 HLEESDCIARAQRGEVAAFSELVARYQDRIYRFLFRMTRSQEDARELAQETFLNAYQALP 103 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 ++ D+ TWL+RIA N A + L R V +E + S + PE + Sbjct: 104 RWQPDAQLSTWLFRIARNQALDLLRRAQR------VAFVELDETLSEQMPADTPTPEAAL 157 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + + + + ++ L + R + LR+++ ++YE+IA ++ +GTV+SRI RAR + Sbjct: 158 QARQRIEALEGALQRLSVEHREILLLRDIEDMAYEDIAEVLGISLGTVKSRIARARAGLL 217 Query: 183 NKV 185 + Sbjct: 218 QLM 220 >UniRef50_C1AEN0 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEN0_GEMAT Length = 196 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 3/190 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 L D +V G+++AF LV RYQ ++ + V R + D D+VQE FI+ YR + Sbjct: 7 TLEDGDVVSSFLAGEERAFEELVDRYQGRLLNFVYRTIGDRDRAEDLVQEVFIRVYRHIA 66 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS--DVDAIEAENFESGGALKEISNPEN 120 F F TW+Y IA N AKN L + R P + A + + P++ Sbjct: 67 RFDRSKKFSTWIYTIASNLAKNELRNRSRNPLVLFQTIKAKFEDEDRPLQFEDVHTRPDD 126 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L LR++V +++ LP R LREL+G SYEEIA I +GTV+SR+ RAR A Sbjct: 127 LFRKRHLREMVEQSVGKLPAHHREVFVLRELEGKSYEEIAEITGVNLGTVKSRLNRARTA 186 Query: 181 IDNKVQPLIR 190 + P++R Sbjct: 187 FAEIIAPMVR 196 >UniRef50_A5V1V8 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Chloroflexi (class) RepID=A5V1V8_ROSS1 Length = 224 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 3/183 (1%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 L+ R Q GD +A LV+ Q + S+ + + D D+ QEAFI+ +RAL + G Sbjct: 6 AELIRRAQAGDPEALTHLVLSQQQYIYSIAMSVLKNPDDAADLTQEAFIRLFRALPQYNG 65 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI--SNPENLMLS 124 +S F TWLYR+ VN ++ L +GR+ P V + + G + S+PE + S Sbjct: 66 ESRFTTWLYRLVVNLGRDELRRRGRQAPLVSVPESDEDFDAIGTIADDDRWSDPEVALDS 125 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +ELRQ V R ++ L E R+ +TL + + Y +IA I+D P+ TV+S I R +E + Sbjct: 126 QELRQEVRRALDQLEEHYRLVLTLYYFEDMKYTDIAEILDLPLNTVKSHIRRGKERLAAI 185 Query: 185 VQP 187 +Q Sbjct: 186 LQE 188 >UniRef50_C5CIP4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP4_KOSOT Length = 186 Score = 197 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 105/183 (57%), Gaps = 2/183 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 + ++ L+E ++K + A+ +L +Y ++ S++ Y+ + DV DV+QE FIK ++ + F Sbjct: 1 MDEKKLIEGLKKKEMWAYEVLYDKYAPRLGSVIRSYLGTDDVDDVLQETFIKVFKNIKKF 60 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG++ TWLYR+A+N + + + R + + + + ++ +++ Sbjct: 61 RGEAKLSTWLYRVAINVCNDIIAKRKRNREY--LTDFQENDEKPFLEPPAPNDVFREVMN 118 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E + + I LPE+ R+ I LR+++GLSYEEIA I+ P GT++SR+ AR+ + + Sbjct: 119 ELSYEELTNIIAKLPEEDRLLIKLRDIEGLSYEEIAQILGKPNGTIKSRLHYARKRLRHL 178 Query: 185 VQP 187 ++ Sbjct: 179 LEE 181 >UniRef50_B5VYK7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Arthrospira RepID=B5VYK7_SPIMA Length = 263 Score = 197 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 6/193 (3%) Query: 3 EQLTDQVLVERVQKG---DQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAY 58 E+L++ LV R Q+G D+ AF L+ RYQ V ++ P D D+ QE +I+ Y Sbjct: 69 EKLSNYDLVLRCQEGLQPDRLAFTELLRRYQSHVDKILFHLAPDWQDRADLAQEIWIRVY 128 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE--AENFESGGALKEIS 116 R + + + F WL RIA N + L + R P+ +DA + + Sbjct: 129 RNIKRLQEPAKFQGWLSRIATNLFYDELRKRKRVRPALSLDAPRTVDDGEMEWELPADRP 188 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 P+ + + E + I LPE R I LRE+ GL+YEEIA I +GTV+SRI R Sbjct: 189 GPDEDLATREFYDHLQEAIADLPEVFRTTIVLREIQGLAYEEIAEITGVSLGTVKSRIAR 248 Query: 177 AREAIDNKVQPLI 189 AR+ + +++QP + Sbjct: 249 ARQRLQSQLQPYL 261 >UniRef50_A6C5N0 RNA polymerase sigma factor RpoE n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C5N0_9PLAN Length = 207 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 3/186 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 DQ L++ G +AF+ LV++YQ ++ + R + S D D QE F +A+ L +F Sbjct: 4 NDQYLIQECLAGRTEAFDQLVLKYQDRLFRTLVRVLGSSDDARDAAQEGFTQAFFKLKTF 63 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG +AFY+WL+RI+ N A R S+ +D E ++P + Sbjct: 64 RGTAAFYSWLFRISFNAAITQKRKTKR--TSATIDPQENPAGTWLVDTNPANHPPEVAEL 121 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +++V + + L E+ R + LREL+G+SY EIA I + P+GTVRSRIFR R + K Sbjct: 122 AERKKLVHQALNELQEEYRTPLILRELEGMSYGEIAEITEIPLGTVRSRIFRGRNELKQK 181 Query: 185 VQPLIR 190 + L + Sbjct: 182 LNTLFQ 187 >UniRef50_B7R6J3 RNA polymerase sigma factor, sigma-70 family n=5 Tax=Thermoanaerobacterales RepID=B7R6J3_9THEO Length = 191 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 114/182 (62%), Gaps = 7/182 (3%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + L+ER + GD +AF+LL+ Y+ V +++ R V + D+ QE FIKAY ++ +FR Sbjct: 4 EELLERARNGDDEAFSLLIENYEKYVYNVILRIVEEKEEAKDIAQETFIKAYMSIKTFRK 63 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 DS+F TW+YRIAVNTA +YL R + V A E E +K PE ++ + Sbjct: 64 DSSFRTWIYRIAVNTAMDYLRK-KVRSEVNLVTAAEDE-----LEIKSFQTPEEVIEQKL 117 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++V R I LP D ++A+ LR+++G++YEEIA+I+ +GTV+SRI+RAR + +++ Sbjct: 118 TVEMVRREISKLPVDYKIALILRDIEGMNYEEIASILKVNLGTVKSRIWRARNLLRERIK 177 Query: 187 PL 188 L Sbjct: 178 SL 179 >UniRef50_A6GDP6 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDP6_9DELT Length = 239 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 9/190 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDS 68 LV R+++GD++AF LV YQ ++ LV R + + + D+ QE FI YR + ++RG+ Sbjct: 50 LVRRLKQGDERAFQELVHTYQDRIFGLVYRMIGNRQEAEDIAQEVFISVYRGIANYRGEG 109 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEA--------ENFESGGALKEISNPEN 120 FYTWLYRIA NT KN L R D E+ + + PE Sbjct: 110 RFYTWLYRIASNTTKNRLKYLKGRNFHRADDIDESPAAHTKGKDGGPVVALQSVVHGPEA 169 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + L Q + R I +L + R+ I LR++ G +Y EI AI GT++SR+ RAR A Sbjct: 170 TVQGNRLEQAIQREIANLEPEHRLLIVLRDIQGHTYAEILAITGLQQGTLKSRLHRARLA 229 Query: 181 IDNKVQPLIR 190 + +++P + Sbjct: 230 LKVRLEPYLE 239 >UniRef50_C0QIQ1 RpoE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ1_DESAH Length = 190 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 64/186 (34%), Positives = 109/186 (58%), Gaps = 1/186 (0%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + D L++R Q+GD AF LV +Y+H+V ++ R++ D DV Q+ F+ Y++L S Sbjct: 1 MKDNDLLQRFQRGDADAFTQLVDQYKHRVTNICYRFLSDREDARDVTQDVFMAVYKSLGS 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 FR ++ TW+YRIAV + N++ + R+ V + E+G ++ PE + Sbjct: 61 FRQEAKLSTWVYRIAVTRSLNFVKKRKRKARFEQVRDMLTFKEEAGLESASVTTPEKELE 120 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +E Q++ + ++SLP++ ++A TL + DG+ Y EIAAIMD + +V S IFRAR+ + Sbjct: 121 QQEEFQVLQQALDSLPKNQKIAFTLSQYDGVKYAEIAAIMDTTISSVESLIFRARKNLQK 180 Query: 184 KVQPLI 189 K+ Sbjct: 181 KLFHYY 186 >UniRef50_Q1D378 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D378_MYXXD Length = 208 Score = 196 bits (500), Expect = 3e-49, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 92/183 (50%), Gaps = 2/183 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D L+ R+++G+ AF LLV +Q ++ R V + D+VQE F+ ++ + FR Sbjct: 25 DAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMVGDREEAHDLVQEIFVSVHQNVRRFR 84 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 DS TWL+RI N N L RR EA S G P+ + S Sbjct: 85 EDSKLSTWLFRITRNHCINRLKYLKRRGRGRSEVFDEAAALLSEGG-GTAPGPDAALESA 143 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 R V I L D RM + LR+++GLSY+EI I + P GTV+SR+ RARE + + + Sbjct: 144 RERARVQWAISQLEPDARMLVALRDIEGLSYDEIIDITELPEGTVKSRLHRAREKLADLL 203 Query: 186 QPL 188 L Sbjct: 204 GRL 206 >UniRef50_Q1IHX3 Sigma-24, ECF subfamily n=3 Tax=Acidobacteria RepID=Q1IHX3_ACIBL Length = 237 Score = 196 bits (500), Expect = 3e-49, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 5/193 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 ++ D L+ Q+GD AF LV +Y V L S D D+ QEAF+KAYR + Sbjct: 45 RVNDADLIRASQRGDHAAFEELVRQYDSAVLRLALHLTRSESDAQDIYQEAFLKAYRNIG 104 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI----EAENFESGGALKEISNP 118 +FR + +FYTW+YRI N + L + R + V E + + + ++P Sbjct: 105 NFRFECSFYTWIYRIVTNLCLDLLRKRQVRKEDAPVATDQRGEEYDLLDQVADDRSGASP 164 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E ++ EL + + +E L RM ++ GL I I++ T ++ +FR Sbjct: 165 ERDLMRRELGSRIAKALEKLTPRERMVFEMKHYQGLKLRTIGEILNTTEETAKNTLFRGT 224 Query: 179 EAIDNKVQPLIRR 191 + + + + R+ Sbjct: 225 QKLRAALADMKRK 237 >UniRef50_Q1CYD9 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Cystobacterineae RepID=Q1CYD9_MYXXD Length = 217 Score = 196 bits (499), Expect = 4e-49, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 8/199 (4%) Query: 1 MSEQL---TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIK 56 MS++ D+ L+ R Q GD AF LV ++ KV L R S D ++ Q+ F+ Sbjct: 14 MSDEAVMGEDRQLLARAQDGDVSAFEALVDAHRDKVYGLALRMTRSEADAAEITQDTFLS 73 Query: 57 AYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGR----RPPSSDVDAIEAENFESGGAL 112 AY+ L FRGD+AF +W++RIA N A L + + E + Sbjct: 74 AYQHLKDFRGDAAFGSWVHRIAANHALMRLRHRRVAQAAEQELQGPEFTERGSLADYPQT 133 Query: 113 KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 + E L EL + + + LPE R L++++GLSYE+IA + ++S Sbjct: 134 DWSRDAEEKALDAELGSAIQQASDRLPEGYREVFLLKDVEGLSYEQIAEATGDSIPAIKS 193 Query: 173 RIFRAREAIDNKVQPLIRR 191 R+ RAR A+ + R Sbjct: 194 RLHRARLALREAIDAFYNR 212 >UniRef50_Q39ZU8 RNA polymerase, sigma-E factor n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU8_PELCD Length = 214 Score = 195 bits (498), Expect = 5e-49, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 3/190 (1%) Query: 1 MSEQLTDQV--LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKA 57 +SE +TD L+ER+++GD+ AF LV + V +L R + + D+ QEAF++ Sbjct: 19 LSEPMTDSESLLLERIRQGDEGAFTQLVSGHLSSVVNLAYRMLGDRQEAEDLAQEAFLRL 78 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 +R+L SFRGD TWLY++ +++ + R E + ++ Sbjct: 79 HRSLPSFRGDCRIKTWLYKVVSRLVIDHIRREQVRRRIFFFRKHEDDPDPVANFADPSAS 138 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P + +L +E RQ +F+ +E L R LR +GL +EIA ++ GTV++ + RA Sbjct: 139 PSDQLLGQETRQKLFKAMEKLSGRQRAVFVLRHQEGLPLKEIAQVLHLKEGTVKAHLHRA 198 Query: 178 REAIDNKVQP 187 + I + Sbjct: 199 VQCIRQEFTD 208 >UniRef50_P73431 RNA polymerase sigma-E factor n=29 Tax=Cyanobacteria RepID=P73431_SYNY3 Length = 223 Score = 195 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 6/193 (3%) Query: 3 EQLTDQVLVERVQKG---DQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAY 58 E LT+ L+ Q+ D AFN L+ RYQ V ++ P D D+ QE +I+ Y Sbjct: 29 ESLTNVDLILLCQQKTRPDSTAFNELLRRYQSHVDKILYHLAPDWQDRADLAQEVWIRVY 88 Query: 59 RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE--AENFESGGALKEIS 116 R + F WL RIA N + L + R +DA + + Sbjct: 89 RNIHRLNEPVKFKGWLSRIATNLFYDELRKRKRVSHPISLDAPRRMDDGEIDWDIESDYP 148 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +P+ + + E + + I+ LPE R I LRE+DGL+YEEIA I +GTV+SRI R Sbjct: 149 SPDETLSTAEFYECLRSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIAR 208 Query: 177 AREAIDNKVQPLI 189 AR + +QP + Sbjct: 209 ARAKLQTFLQPYL 221 >UniRef50_Q2LQI1 Sigma factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQI1_SYNAS Length = 217 Score = 195 bits (497), Expect = 6e-49, Method: Composition-based stats. Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 11/193 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + D V QKGD +AF +LV RYQ K+ ++ R + +VVQ+AF+ A+R + Sbjct: 17 EDNDLKWVLLCQKGDVEAFGILVERYQKKMLNVAYRMTGDYEESCEVVQDAFLAAFRTIK 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGR----------RPPSSDVDAIEAENFESGGAL 112 FRG++ F TWLY I +N+ KN L R P AI+ + + Sbjct: 77 KFRGEARFSTWLYGIVINSTKNRLKQLKRDKSRFWHAGDNPGDPGDGAIDGFDCLAASGS 136 Query: 113 KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 + + + +EL V + I L D R + LR++ GLSY+EI I+ P GTVRS Sbjct: 137 GQQESLLEHLEKKELEAGVQKCIGLLESDHREILILRDIQGLSYDEIVTILKIPPGTVRS 196 Query: 173 RIFRAREAIDNKV 185 R+FRAR A+ + + Sbjct: 197 RLFRARIALKDLL 209 >UniRef50_UPI00016C0B7C RNA polymerase ECF-type sigma factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0B7C Length = 198 Score = 195 bits (497), Expect = 7e-49, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 5/184 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 + + L++R Q GD AF +L+ Y+ + + + + + D D QE IK ++ L Sbjct: 1 MDESSLIKRAQSGDVGAFEVLIKNYESTIYRICFKVLKNEADSFDAAQEVCIKIWKQLGK 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F S F TW+YRIA N + L + S E + N E + Sbjct: 61 FEEKSKFSTWVYRIATNQCLDILRKGKNKKVVSINQNEE----WALELEDTKINIEKQVE 116 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E +I+ ++ L ++ I L+++ LSYEEIA + +GTV+SR+FRAR A+ N Sbjct: 117 DAERLRILKSALDELKKEYSEIIILKDVKNLSYEEIATEKNISLGTVKSRLFRARNALKN 176 Query: 184 KVQP 187 ++ Sbjct: 177 ILKQ 180 >UniRef50_B8JDV3 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Anaeromyxobacter RepID=B8JDV3_ANAD2 Length = 292 Score = 195 bits (496), Expect = 9e-49, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 1/187 (0%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + +D L++R + GD++A + L+ R+Q +V + D D++QE + A R + Sbjct: 2 ETSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTVK 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 FRG S+ TW+Y IA + P E+ P+ + Sbjct: 62 DFRGASSVSTWMYTIARSFCIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTPDESL 121 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 ++ Q + I L R + LR+++GLS E+A +M V V+SR+ RAR A+ Sbjct: 122 AGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAEVMGLSVEAVKSRLHRARVAVR 181 Query: 183 NKVQPLI 189 + PL+ Sbjct: 182 EALVPLL 188 >UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T27_SYMTH Length = 208 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 4/187 (2%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS + D+ L Q+GD AF LV R++ +V + + V D D+ QE F+K +R Sbjct: 1 MSPR--DETLAFAAQQGDMDAFAALVERHKGRVYRTLYQVVGDAADAQDLAQEVFVKVFR 58 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE-SGGALKEISNP 118 L S+RGD+AF TWL+R+ +N A ++L A+ RRP + ++ E + P Sbjct: 59 NLGSYRGDAAFTTWLHRVTLNVAFDWLRARKRRPLTVPLEPPPGEEEHRQADLPSPEAGP 118 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 E L L EE R+ + I+ L D + + L LSY++IA + PV TV +R++RAR Sbjct: 119 EELTLREERRRRLRDAIDRLSPDYKEVVLLYHFYHLSYQQIADRLGVPVRTVETRLYRAR 178 Query: 179 EAIDNKV 185 + + Sbjct: 179 ANLKRML 185 >UniRef50_A0LHW6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHW6_SYNFM Length = 202 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 112/193 (58%), Gaps = 5/193 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 +++ D V +GD+ AF+ LV+R++ +V +L R + + + QE F++ +R+ Sbjct: 10 ADREQDLAWVGAFLEGDRTAFDRLVLRHKDRVFNLCWRLLGDREEANEQAQEVFVRVFRS 69 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQ--GRRPPSSDVDAIEAENFESGGALKEISNP 118 + FR S+F TWLY IAVNT +N L + RR +DA++ + + +P Sbjct: 70 IKDFRFKSSFSTWLYAIAVNTCRNRLKSSEYRRRRRMVSIDALQDPDCDRAVPELRDPSP 129 Query: 119 E--NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 + M E ++ I+SLPE+ R + LR+++G++YEEIAA+ +GTV+SR+ R Sbjct: 130 SVLDRMTDRERDGLIQSAIDSLPEESRTIVVLRDIEGIAYEEIAAVTRLNLGTVKSRLAR 189 Query: 177 AREAIDNKVQPLI 189 AR+ + +K++ LI Sbjct: 190 ARQQLRDKLKGLI 202 >UniRef50_B1I6K2 RNA polymerase sigma factor n=5 Tax=Clostridiales RepID=B1I6K2_DESAP Length = 205 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 5/189 (2%) Query: 5 LTD-QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + D + LV R Q GD AF LV YQ K+ +L + D D+ QEAF+KAY AL Sbjct: 1 MDDVKTLVRRSQAGDTAAFEELVRLYQDKIYALACHLAGNQADAEDLAQEAFVKAYYALK 60 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE-SGGALKEISNPENL 121 FR ++ F TWL+RI VN N + RP S + ++ + E + P+ Sbjct: 61 GFRNEADFGTWLHRITVNQWINL--KRRERPTLSLDEPVQTGDGEVQRELAAASAEPQEA 118 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + +E ++ V R + + + R+ + LRE+ SYEEIA ++DC +GTV+SRI RAR A+ Sbjct: 119 LERKEFQRFVRRALGEISREHRVVLVLREMHDYSYEEIARVLDCSLGTVKSRISRARTAL 178 Query: 182 DNKVQPLIR 190 +V L R Sbjct: 179 KERVGALAR 187 >UniRef50_A9G0E6 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G0E6_SORC5 Length = 195 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 1/183 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 TD+ LV++ + GD +AF +LV RYQ ++ L V S + DV QE F++AY+ALD F Sbjct: 5 TDRELVDQARSGDAQAFGVLVRRYQKRIFRLAFHLVRSGAEAEDVTQETFVRAYQALDRF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G S +TWLYRIAVN + N + A+ S+ D E +P Sbjct: 65 DGRSEPFTWLYRIAVNLSLNMIRARKPSKNSTPADDPRIEALLLETRPSHGVDPAASTQR 124 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 EL + I++L + LR + L +DG+ +E+ + I+ CP GTV R+ AR + Sbjct: 125 RELAAALCDGIDALSDTLRTTLILVCIDGVPHEDASRILGCPEGTVAWRVHEARRKLRAY 184 Query: 185 VQP 187 + Sbjct: 185 LAE 187 >UniRef50_C6CUE1 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Bacillales RepID=C6CUE1_PAESJ Length = 198 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 12/190 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD----VPDVVQEAFIKAYRA 60 +TD L+ ++ G+ + ++ L+ RYQ K+ + + + S D+ E F KAYR+ Sbjct: 1 MTDSQLIREIKDGNIELYSELMRRYQRKILAFIYHMLKSAKLELLAEDLCSETFYKAYRS 60 Query: 61 LDSFRG-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 L SFR D++F TWLY IA NT + L Q + + A PE Sbjct: 61 LHSFREVDASFSTWLYTIARNTVLSELRKQK-------SAHVPLDESNMMPAAPPDQVPE 113 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 +L E +V I +LPE R A+ LRE D L Y+EIA I+ V +V+S +FRAR Sbjct: 114 QHVLRNERMAMVREAINNLPEKQRSALILREYDQLDYQEIANILGQTVSSVKSLLFRARA 173 Query: 180 AIDNKVQPLI 189 ++ ++++P Sbjct: 174 SVKSQLEPYF 183 >UniRef50_A7HRP1 RNA polymerase sigma factor n=3 Tax=Proteobacteria RepID=A7HRP1_PARL1 Length = 218 Score = 193 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 11/186 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 ++ +D LV V GD+ A L+ R+ ++ +L R + S D DV QE F++ + Sbjct: 28 DEPSDDELVAAVALGDEAACRELMNRHLPRITALGRRMLGSQADAEDVAQEVFLRVWTNA 87 Query: 62 DSFR-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + G + F TWL+R+A N + L R + D+DAI E P+ Sbjct: 88 GKWEPGRAQFSTWLHRVATNLCLDRLRKN--RGGTEDIDAIPEPASEE-------PGPDR 138 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + EL + V +++LPE R AI L GL+ E A I+ V V S + RAR Sbjct: 139 RLEQSELAERVEAALQALPERQRAAIVLSHYQGLTNIEAAEILGITVEAVESLLSRARRQ 198 Query: 181 IDNKVQ 186 + + Sbjct: 199 LRGSLA 204 >UniRef50_C1F7G4 RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7G4_ACIC5 Length = 223 Score = 193 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 93/190 (48%), Gaps = 16/190 (8%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D +LV + + GD +AF LV +Y +V + + D DVVQ+AF+KAY LD F+ Sbjct: 30 DVLLVNQARDGDVQAFEKLVRQYDRQVFRIAQHITQNREDAEDVVQDAFLKAYEKLDQFQ 89 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGR-RPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G+S FYTWL RI VN A L + R S D D E +PE L Sbjct: 90 GNSKFYTWLVRITVNEALMRLRKRRTGRMVSIDEDVETDEGSMPRDLADWSPDPEALYGQ 149 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVR------------- 171 E+ +I+ +TI+ LP R+ LR+++GLS EE A + V V+ Sbjct: 150 SEMAEILRKTIQGLPPGFRVVFVLRDVEGLSTEETAESLGLSVPAVKSRLLRARLQLRER 209 Query: 172 -SRIFRAREA 180 SR FR R+ Sbjct: 210 LSRYFRDRKK 219 >UniRef50_D0MJ41 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJ41_RHOM4 Length = 221 Score = 193 bits (491), Expect = 3e-48, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 1/188 (0%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 +Q++D+ L+E+ Q G +AFN+LV RY ++ + ++ D++QE F++ YR Sbjct: 29 QQMSDEDLMEQFQAGTVEAFNILVERYSERLMHYLYGFLGDARRCEDLLQETFLRVYRNR 88 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 S++ + F TWLY IA N A++ + RR S + E +P+ Sbjct: 89 HSYQRIAKFSTWLYTIAGNLARSEYRKRKRRRVYSIQSVNRDDEEYEIALPDETFSPDKH 148 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 S + + + S+P D R + LR++ L+YEEIA I P+GTV+SRI R R + Sbjct: 149 AESIIQDKYIQEALSSIPPDFREVVVLRDVQQLTYEEIAQITGLPMGTVKSRINRGRTKL 208 Query: 182 DNKVQPLI 189 ++ + Sbjct: 209 QALLKDIY 216 >UniRef50_Q11VU6 RNA polymerase sigma-24 factor n=3 Tax=Sphingobacteriales RepID=Q11VU6_CYTH3 Length = 208 Score = 193 bits (491), Expect = 3e-48, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 3/183 (1%) Query: 7 DQVLVERVQ-KGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D +LVER + GD+KAF L+ RY+ V ++ + + + D D+ EAF KA++ L F Sbjct: 20 DFLLVERAKTSGDEKAFAELMSRYKKPVYHMILKMIRNVDDAEDLTIEAFAKAFKNLHKF 79 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS-NPENLML 123 D F TWL+RIA N +++ + S + + +K+ + P + Sbjct: 80 NPDFTFSTWLFRIATNNCIDFIRRKKLVTTSISSTYKDDNGEHTEMDIKDSNLTPFEETI 139 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + +I+ + LP + + LR + SYEEIA ++ P+GTV++++ RARE + + Sbjct: 140 KSQKIEIIQAIVSKLPPKYQTLVRLRYFEEYSYEEIAVAIEAPLGTVKAQLHRARELLLD 199 Query: 184 KVQ 186 V+ Sbjct: 200 LVK 202 >UniRef50_A0QCH1 RNA polymerase sigma-70 factor n=112 Tax=Actinomycetales RepID=A0QCH1_MYCA1 Length = 424 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 12/176 (6%) Query: 17 GDQKA---FNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYT 72 GD+ A ++ LV ++ +V L R + D D+ QE FI+ +R++ +++ + F Sbjct: 73 GDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGT-FEG 131 Query: 73 WLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVF 132 WL+RI N + + + R +EA + + NPE + L + Sbjct: 132 WLHRITTNLFLDMVRRRSRIR-------MEALPEDYERVPADEPNPEEIYHDSRLGPDLQ 184 Query: 133 RTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 ++SLP + R A+ L +++GLSYEEI A + +GTVRSRI R R+A+ + + Sbjct: 185 AALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240 >UniRef50_B5JFY7 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFY7_9BACT Length = 191 Score = 192 bits (490), Expect = 4e-48, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 98/188 (52%), Gaps = 2/188 (1%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 + TD LV + ++G Q AFN LV + KV R S D DV Q A+IK ++ L Sbjct: 4 DDQTD-TLVFQAKEGSQTAFNQLVTLHYDKVYGQALRMTRSEEDAKDVAQLAWIKVWKKL 62 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 SFRGDSAF +W+YRI TA + + + ++ + + + Sbjct: 63 SSFRGDSAFTSWVYRITTFTALDLIRKRNSSRETATEAEYLENAANADASPIASPDQITN 122 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + +EL+ + + LPE LR A+ LRE++GLSYEEIA + C GTV SR+F AR++I Sbjct: 123 LERKELQSRIDDAMTKLPEKLRTALQLREIEGLSYEEIAQQLQCKTGTVMSRLFNARKSI 182 Query: 182 DNKVQPLI 189 + L Sbjct: 183 QKHLADLF 190 >UniRef50_C0ZBY3 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBY3_BREBN Length = 189 Score = 192 bits (490), Expect = 4e-48, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 11/185 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D +L+++VQKG++ A+ LV +Y+ ++ S + R D D+ QEAFIKAY LD + Sbjct: 3 DDWLLIQQVQKGNRDAYAHLVDKYKERLYSYLYRMTGQQQDAQDLTQEAFIKAYCQLDKY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + AF WLYRIA N + + + L E PE L Sbjct: 63 KPTDAFLAWLYRIASNLCIDAWRKNKHYAKTPLEET----------RLIESDTPEKAYLE 112 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E + + + I +L E+ R+ L+ L+ +SY+EI+ I+ PV TV+ RI A++ + Sbjct: 113 KEKQDTLQQQIMALREEYRVVFMLKYLEQMSYKEISEILHVPVTTVQMRIHHAKKKLRAS 172 Query: 185 VQPLI 189 + + Sbjct: 173 IAQEM 177 >UniRef50_B7KDZ7 RNA polymerase, sigma-24 subunit, ECF subfamily n=12 Tax=Cyanobacteria RepID=B7KDZ7_CYAP7 Length = 201 Score = 192 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 7/184 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRG 66 + L+ R Q+GD+ AF+ L RYQ KV+S + + + D+VQE FI+ ++ L R Sbjct: 17 ESELIVRCQRGDRTAFHQLYRRYQQKVSSTLYQLCGREMLEDLVQEVFIRVWKGLPKLRQ 76 Query: 67 DSAFYTWLYRIAVNTAKNYLV---AQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 S F TWLYRI N A + + + + D + + E+ ++ + ++ Sbjct: 77 PSYFSTWLYRICWNVAVDGRRQFAKRKQEKRETSTDKDDLSSLETLFRSQDTPD----LM 132 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + +V R +++L D R I L +L+ + +EIA I+ PVGTV+SR+ AR AI Sbjct: 133 QLHYQDLVQRGLQTLSLDHRAVIVLHDLEDIPQKEIAQILQLPVGTVKSRLHYARNAIKK 192 Query: 184 KVQP 187 +Q Sbjct: 193 FLQQ 196 >UniRef50_Q11XN6 RNA polymerase, ECF-type sigma factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XN6_CYTH3 Length = 194 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 3/187 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 TD L+ ++ D++ + V + +V ++ + D +V Q+ FIK ++++DSF Sbjct: 3 TDAELIAGLKSNDRRLYAEFVGAFASRVYNVAFNILHRKEDAEEVAQDVFIKVFQSIDSF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFE--SGGALKEISNPENLM 122 G TW+YRI VN + + L A+ R+ P S + E E +P + Sbjct: 63 DGSCTLKTWMYRITVNKSLDALRAKKRKTPWSVFVHLFTGEGEGNKAIVAVEPVHPGIQL 122 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 +E +I+ IE LPE + L + + +SY+EIA+ ++ V V S + RA++ + Sbjct: 123 EQKEEAEILLSVIEKLPERQKAVFVLYQFEDMSYKEIASTLEISVSAVDSLMSRAKKQLR 182 Query: 183 NKVQPLI 189 ++ L+ Sbjct: 183 EQLNSLM 189 >UniRef50_Q01V29 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01V29_SOLUE Length = 220 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 3/186 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 ++ D LVE +++G ++A+ L+ R+Q V +L R + + DVVQE F+K +R + Sbjct: 18 EVEDFRLVESLREGSERAYEELLTRFQQPVYALALRLLDDQGEACDVVQEVFLKVFRNIG 77 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVA--QGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 SFRG S TW+YRI VN A N + RR A E +P + Sbjct: 78 SFRGQSTLKTWIYRITVNEAHNARRWFFRHRRAEVELDKAPEDSRNLKEVIPDRSRSPFD 137 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 S E ++ +E + R A+ LR++ L+YEEIA ++ +GTV+SRI R REA Sbjct: 138 EAFSREQHVMIEAALERINPIFREAVVLRDITDLAYEEIAEVLGVSLGTVKSRILRGREA 197 Query: 181 IDNKVQ 186 + ++ Sbjct: 198 LREELA 203 >UniRef50_Q1ISX0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISX0_ACIBL Length = 200 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 6/187 (3%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR-GDS 68 V R GD A+ +V + ++ +L R+ S D D+ QE FIK YR L SF G + Sbjct: 11 VRRCVAGDTAAWEDIVRQTNRRIYNLCYRFSGSPDDAQDLTQEVFIKIYRTLGSFDSGKA 70 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN----PENLMLS 124 +F TW+ + N ++ + +DA + + +I++ P+ + S Sbjct: 71 SFVTWVTTVTRNLLVDHFRKGKYDRMTDSLDAPMGDEEDGLALGSQIADKGQTPDERLES 130 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +++V + ++ L +LR A+ LR+L + Y+EI+ I+ P GTV+SRI R R + Sbjct: 131 RETKELVHKALQKLSPELREAVILRDLQDMDYKEISQILKIPEGTVKSRINRGRTELARL 190 Query: 185 VQPLIRR 191 +Q R+ Sbjct: 191 LQRSNRQ 197 >UniRef50_Q01Z55 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z55_SOLUE Length = 186 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 107/189 (56%), Gaps = 10/189 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M + TD+ LVE ++G+++AF +L Y+ K+ S+ R+ D+ Q+ F+K Y Sbjct: 1 MVLECTDRELVEGCRRGEREAFRVLFETYKDKIYSIALRFSGDQALAMDIAQDTFLKLYS 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 ++ FRG+S F TW+YR+ VN+ ++ R P +D E ++ + Sbjct: 61 SIADFRGESQFSTWVYRLVVNSCLDHKRKSWRMIPLAD---------ELLAVMRAPGDAL 111 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + ++ E+ + V R +E LPE+ R+ + LR +GL+YE+IA ++ C +GTV SR+ RA Sbjct: 112 HAVIRTEMSERVQRAVEKLPEEQRIVVVLRYTEGLAYEQIAEVIGCSMGTVASRLNRAHR 171 Query: 180 AIDNKVQPL 188 A++ ++ L Sbjct: 172 ALERRLANL 180 >UniRef50_Q1D3E5 RNA polymerase sigma-70 factor, ECF subfamily n=6 Tax=Myxococcales RepID=Q1D3E5_MYXXD Length = 223 Score = 192 bits (488), Expect = 8e-48, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 6/192 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 + +D+ L+ Q GD +AF LV +++ V + + R+ DV+QE ++K R+ Sbjct: 17 PETSDERLMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVRSA 76 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFES-----GGALKEIS 116 + + F TWLY IA N + + R SS + G + Sbjct: 77 GDYTPKAKFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAERDESRPLGEGLPDAGA 136 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +PE + LR ++ R + +LP++ R TLRE G+ +++IA + TV+SR+ Sbjct: 137 SPERGAYNARLRPLLERALATLPDEQREVFTLREYSGIPFKDIAEVTGVSENTVKSRMRY 196 Query: 177 AREAIDNKVQPL 188 A + + ++ + Sbjct: 197 ALDGLRRRLAEM 208 >UniRef50_A6G087 RNA polymerase sigma-E factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G087_9DELT Length = 198 Score = 192 bits (488), Expect = 8e-48, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 6/170 (3%) Query: 26 VVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKN 84 + RYQ KV ++ ++ + D DVVQE+FIK +R + F G+S+FYTWLYRI N + Sbjct: 1 MQRYQRKVYAVAFGFLRNQEDALDVVQESFIKVHRYIGKFEGNSSFYTWLYRIVANLCID 60 Query: 85 YLVAQGRRPPSSDVDAI-----EAENFESGGALKEISNPENLMLSEELRQIVFRTIESLP 139 +L R D + + + L + +P +++ +E+ Q V +++ L Sbjct: 61 HLRKAKRHRDVEFDDGLRHDGKDEPPSDLLPHLAQFGDPSDMLRRKEILQAVEASLDHLS 120 Query: 140 EDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 + R I +REL G+SYEE+A M C GT+ SR+F AR + + + Sbjct: 121 DKHRAVIVMRELQGMSYEEMAQAMKCSKGTIMSRLFHARRNMQKLLTEQL 170 >UniRef50_B3QRQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QRQ4_CHLT3 Length = 188 Score = 191 bits (487), Expect = 9e-48, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 12/187 (6%) Query: 6 TDQVLVERVQKGD----QKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 +D L+ ++G+ +KAF L+ RYQ K+ + R + S D DV Q F+K Y A Sbjct: 3 SDHELIAEFKQGNAIRREKAFTELIRRYQEKIYWVCRRMLKSHDDADDVAQNVFVKIYHA 62 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 LD F S F+TW YRIA N + NY+ +Q R + + S+P+ Sbjct: 63 LDKFNEASQFFTWAYRIAANESINYMRSQKVRQAVGLDTLMSEPAGKE-------SHPDE 115 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + E +++ I LPE R +R + LSYEEIA + VG +++ F A + Sbjct: 116 HLEKTEQSKLIEEAIARLPEKQRKVFVMRYYEELSYEEIAESLGTSVGGLKANYFHAFKK 175 Query: 181 IDNKVQP 187 I+ ++ Sbjct: 176 IEEILKK 182 >UniRef50_Q21QW1 Sigma-24 (FecI-like) n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QW1_RHOFD Length = 187 Score = 191 bits (487), Expect = 9e-48, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 ++ V R + GD+KAF+ LV R+Q V + R + S D ++ QEAFIKA++AL + Sbjct: 10 SEDDWVSRARAGDRKAFSELVRRHQKPVHRYLLRMLGSHDDAMELTQEAFIKAWQALPQW 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 R ++ F TWL+RIA NTA + L + D+ +A E +P + Sbjct: 70 RPEAQFRTWLFRIANNTALDALRHRKLIEFVPLEDSFDAPGSE--------PDPAHQAQV 121 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + + +++ L + R + LRE++ +SYEEI +++ GTV+SR+ RAR A+ Sbjct: 122 TQEVRQLDTSLKKLMPEHRQILLLREVEEMSYEEIGSVLSLNEGTVKSRLARARAAL 178 >UniRef50_D2MK89 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK89_9BACT Length = 969 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 5/184 (2%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M+ D L++R GDQ AF LV +YQ V +L+ R + ++ Q+ F+K Y+ Sbjct: 2 MNT--NDVDLIQRTLDGDQDAFTKLVNKYQKWVHALIWRKIGDFHIAEELTQDVFLKVYK 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 L + + F +WLY IA +L + R +DA+ E + N Sbjct: 60 RLSTLKRPDHFPSWLYVIATRRCIAWLRKK--RVSIKSLDAMPTAQLEELCYTQYERNHL 117 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 E+ R++V ++ LPE R +TL L +S EI+ + TVRSR+ RAR+ Sbjct: 118 EAAAIEQRRELVKSLLKKLPESERTVVTLFYLAEMSGAEISQFLGVSPNTVRSRLHRARQ 177 Query: 180 AIDN 183 ++ Sbjct: 178 RLEK 181 >UniRef50_B3QZ33 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Bacteroidetes/Chlorobi group RepID=B3QZ33_CHLT3 Length = 266 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 29 YQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 + + + R D D+VQE ++KAYR DSF + WL+RI N+ N Sbjct: 91 HIDSLYNFALRMTGDPEDANDLVQETYMKAYRFFDSFEKGTNCKAWLFRILKNSYINRYR 150 Query: 88 AQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAIT 147 + ++P D D I+ + + ++ + + + + V R + SLPED R + Sbjct: 151 KESKQPDKVDYDDIKEFYHTIRHSSSDSNDMQEKLFGNLMDEQVSRALNSLPEDFREVVQ 210 Query: 148 LRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIR 190 L +++G +YEEIA ++DCP+GTVRSR+ R R+ + +K+ + Sbjct: 211 LCDIEGFTYEEIANMVDCPIGTVRSRLHRGRKILRDKLIDYAK 253 >UniRef50_B3E7K8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacter lovleyi SZ RepID=B3E7K8_GEOLS Length = 203 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 11/198 (5%) Query: 1 MSEQLT--------DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQ 51 MS+ ++ +Q L+ + GD AF LV+RYQ + ++ R + D ++VQ Sbjct: 1 MSDDMSATNTEIADEQQLLAACRNGDTHAFEQLVLRYQRGLYNVAFRISGNEADAAEIVQ 60 Query: 52 EAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV--AQGRRPPSSDVDAIEAENFESG 109 E F+ A+R + +FRG++ TWL IAVN A+ Q R S + E + Sbjct: 61 ETFLAAWRKIKAFRGEARLSTWLTSIAVNQARTRWQQNRQKRSREESLDASAEEKQGAPL 120 Query: 110 GALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGT 169 E + L+ LR ++ R I +L + R + LR++ + Y+E+ ++ GT Sbjct: 121 QIASEQPSALELLERSVLRGLLERCIRALDQGFREVLVLRDMREMPYDEMGQVLGLREGT 180 Query: 170 VRSRIFRAREAIDNKVQP 187 V+SR+FRAREA+ + V Sbjct: 181 VKSRLFRAREAVRDCVTK 198 >UniRef50_Q02AX4 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AX4_SOLUE Length = 236 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 4/183 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 DQ LV R GD+ A+ LV ++ +V L R+ S + D+ QE F++ ++ + +FR Sbjct: 51 DQSLVSRCLGGDEAAWEELVRQHTRQVYGLCFRFTNSAQEAQDLTQEVFLRVFKTIKTFR 110 Query: 66 G-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + +F TWL R+ N ++ ++ + ++ + + P+ + Sbjct: 111 STEGSFGTWLARVTRNLLIDHYRRTRQQRVTDSIE--DQLPVLEQVGTSGAARPDQALAG 168 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +I+ T++ L DLR A+ LR+L + Y EIA ++D P GTV+SRI R R + Sbjct: 169 REASEILQATLQKLSPDLREAVILRDLQEMEYREIADVLDIPEGTVKSRINRGRAELARL 228 Query: 185 VQP 187 ++ Sbjct: 229 LRK 231 >UniRef50_Q67K53 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67K53_SYMTH Length = 203 Score = 190 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 3/185 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 TD+ LV KGD+ AF +V RY+ ++ L R + + D D VQE +K AL F Sbjct: 3 TDEELVAAYLKGDEAAFEEIVRRYEDRLYRLSYRMLGNHHDALDAVQEILVKLMAALPKF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS--NPENLM 122 G S F TW+YR+A NT + +GR S +E S L + NP+ + Sbjct: 63 EGRSRFGTWVYRLAANTCLDIRRKRGRTAAESLEATLEFSPAASLAILDDEPADNPDLYL 122 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + +V ++ LPE R + LR+L+ S ++A ++ VG +++R+ RAR+A+ Sbjct: 123 EQQYRENVVRAALDKLPESQRRLLELRDLEDFSNSQVADMLGIEVGALKARLHRARQALK 182 Query: 183 NKVQP 187 + Sbjct: 183 RVLDA 187 >UniRef50_Q2IIH1 Sigma-24 (FecI-like) n=4 Tax=Anaeromyxobacter RepID=Q2IIH1_ANADE Length = 218 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 1/182 (0%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 + +GD++AF+ LV ++ V +L R + D D QEAF +AY +L +F Sbjct: 30 EAAWTRSAARGDRQAFSRLVDLHKRTVFALCVRLLRDQDEAQDAAQEAFARAYASLAAFD 89 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 F WL RIA N + + + + ++DA + A + ++ + Sbjct: 90 PSQPFAPWLLRIARNHCLDVIRRRLPQAQRVELDAAPEDGAPRDLADPDAPRGDDALERR 149 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 EL + + + +LP + R + L ++ LSY+EIAA MD P+GTV + + RAR + + Sbjct: 150 ELARTLEAAVAALPANYREVVHLFHVEHLSYKEIAAAMDVPIGTVMTWLHRARARLKATL 209 Query: 186 QP 187 Sbjct: 210 DA 211 >UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB78_GEMAT Length = 200 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 5/189 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 L D +V Q+G + AF LV RY+ V SLV R V + D+ Q++FIK +D Sbjct: 9 TLPDADVVRLAQQGRELAFRELVRRYERPVFSLVYRMVRDRETAEDLAQDSFIKVLNHID 68 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL----KEISNP 118 + + F +WL++IA N A ++L + S D A E E + Sbjct: 69 RYSPEFKFSSWLFKIANNVAIDHLRRRRVETISMDGSPHAATASEVEATSLELQSEQESA 128 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + ++EL + R I SL + R I LR ++G SYEEIA +D P+GTV++ I RAR Sbjct: 129 LDEIEAKELGSAIERAIASLRPEYRACIMLRHVEGRSYEEIATTLDLPLGTVKTYIHRAR 188 Query: 179 EAIDNKVQP 187 + ++P Sbjct: 189 HELRRALEP 197 >UniRef50_Q1IJV0 Sigma-24, ECF subfamily n=2 Tax=Acidobacteria RepID=Q1IJV0_ACIBL Length = 241 Score = 189 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 8/193 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 + +V ++ G + A++ L+ +Y + SLV R + D D QE FIK +R + F Sbjct: 18 EEGAIVAELKAGSEDAYSWLIAQYNQPIYSLVYRILDDPSDAADTTQEVFIKVFRGIKRF 77 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGA-------LKEISN 117 +S+ TW+YRIA++ A N R E E + + + Sbjct: 78 NSESSLKTWIYRIALHEASNRRRWFFRHKAKEASIEAGPETEEHSHPIGLKDTLVDDSES 137 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P + + E+ V +++L E R + LR+++ LSYE+IA I + +GTV+SR+ R Sbjct: 138 PFDTVFHTEVSAKVEEELKNLQEPYRTTVILRDIEELSYEQIAEITETSLGTVKSRLVRG 197 Query: 178 REAIDNKVQPLIR 190 REA+ ++ ++ Sbjct: 198 REALKKRLTRYVK 210 >UniRef50_Q67KL8 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KL8_SYMTH Length = 188 Score = 189 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 8/180 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 +Q + R Q GD +AF LV +Q V R D D+ EAF++AYR+L F Sbjct: 9 EQEWIRRAQGGDAEAFAALVRLHQDGVYGFCLRMTGRREDALDLTSEAFLRAYRSLAGFD 68 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 F WL RIA N +++L A+ +RP + + + + +L+ Sbjct: 69 VTQPFRPWLLRIAANLCRDHLRARQQRPAPVEDAVLADLPDPAPPPPGQ-------VLAV 121 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 R V + + LPE R A+TL + LSY+EI+ +++ PVGTV + + RA+ + ++ Sbjct: 122 HDRAAVRQAVAELPEPYRTAVTLHYFNHLSYQEISEVLNIPVGTVGTHLHRAKRLLRKRL 181 >UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F885_ACIC5 Length = 236 Score = 189 bits (481), Expect = 5e-47, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 5/182 (2%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR-GDS 68 V+R GD A+ LV + +V +L R+ S D D+ Q+ F+K Y L SF Sbjct: 49 VQRCMDGDSGAWTELVQTHHRRVYALCYRFTGSSSDAEDLTQDVFLKVYGNLRSFDTERG 108 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESG---GALKEISNPENLMLSE 125 +F TW+ + N ++ ++ +S +D E + + +P + + Sbjct: 109 SFQTWITTLTRNLLVDHFRRSKQQRATSSMDEGWDEADDLPLTQRLAQPGPDPHDRAVQR 168 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +L ++V + + +LR A+ LR+L L Y+EIA I+ P GTV+SRI R R + + Sbjct: 169 QLEKLVQEALVKISPELREAVILRDLQDLDYKEIAQILRVPEGTVKSRISRGRAELARVL 228 Query: 186 QP 187 + Sbjct: 229 ER 230 >UniRef50_C4KZK8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KZK8_EXISA Length = 191 Score = 189 bits (481), Expect = 5e-47, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 1/178 (0%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 LV+ ++ G+ +F LV Y+ V ++ + + + D QEAFI+AY +D++ Sbjct: 8 LVDELRAGNHDSFAELVELYKDGVFAIAYKILYDRGEAEDAAQEAFIRAYTRIDTYDAQY 67 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 F TWLYRI N A + L + A E P+ ++ E+R Sbjct: 68 KFKTWLYRITTNVAIDRLRKRKPEYSMDAEIAGTDGLTYQDHLADEAPQPDAQVVHREIR 127 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 + I+ LP+ R+ + L+ +D LS +EI+ ++D PV TV++RIFR RE + Q Sbjct: 128 SEMHEAIKQLPDKYRIPLLLKYVDDLSLKEISVMIDMPVATVKTRIFRGREMLKTIFQ 185 >UniRef50_B2UN43 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B2UN43_AKKM8 Length = 197 Score = 189 bits (481), Expect = 5e-47, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 3/189 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 +E D L+ RV+ GD A +LV ++Q+ V + V+R + + + D+ Q+ FI+ ++ Sbjct: 10 AEPDEDAKLMLRVRNGDASAMEMLVRKHQNSVYATVARMLNNGPETEDIAQQVFIRIWKG 69 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 ++ + F TW++ I N N + Q R+P +S E L+ P+ Sbjct: 70 AGNYEPSARFTTWMFTILRNLVFNEVRRQKRKPTTSADAMEEEGGM--AVFLEPSQTPDE 127 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + EL+ V I +LPE R+A+ LR + + YEEIA +D V +S +FRAR Sbjct: 128 ALEHTELQHAVDAAIAALPEKARLAVQLRRFENMPYEEIARALDMTVPATKSLLFRARNM 187 Query: 181 IDNKVQPLI 189 + + + Sbjct: 188 LKEALASFL 196 >UniRef50_C1ZDS5 RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDS5_PLALI Length = 193 Score = 189 bits (481), Expect = 5e-47, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 115/191 (60%), Gaps = 6/191 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + LTD+ L++ Q G + F LLV RY+ ++ ++R S D D+ QEAF +A+RA+ Sbjct: 2 QTLTDEELIQAAQTGHTEGFTLLVRRYEQRLFRSMTRISGSPEDAEDICQEAFTRAWRAI 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRR-PPSSDVDAIEAENFESGGALKEISNPEN 120 FRG+S FY+W++RIA+N L + R+ S +DA+ + + +P + Sbjct: 62 SKFRGESQFYSWVFRIALNL----LRSSKRQLKASVSLDAVRDAIGDDLEDQRADVDPSH 117 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + + +++V ++++ E R + L +L+ +SYEEIA ++DCPVGTVRSRI RAR+ Sbjct: 118 SLQVRDQQRVVQEAMDAMEESFRTVLVLTDLEEMSYEEIARVVDCPVGTVRSRIHRARQE 177 Query: 181 IDNKVQPLIRR 191 +++ L+R+ Sbjct: 178 FRGRMERLLRQ 188 >UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4L0_BREBN Length = 185 Score = 188 bits (480), Expect = 6e-47, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 10/187 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+ ++ V +G+++A+ L+V +Y+ K+AS++ R + D D+VQE FIKAY +L + Sbjct: 3 DDREVIAEVLQGNKEAYALIVNKYKGKIASILQRTLHHSHDAEDMVQEVFIKAYYSLPDY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + + +F WLYRIA+N + L + R P +++D E PE L Sbjct: 63 KPNCSFSAWLYRIAINRGIDELRKRKRMPSVTEMD---------VEVKDECPIPEEDYLE 113 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E R + + + +L ++ R + L L LSY EI + V TVR R+ AR+ + ++ Sbjct: 114 KEQRHALRQQMMTLDKNHRAILDLHYLQHLSYREIGNKLSLSVDTVRMRLSYARKKLRDQ 173 Query: 185 VQPLIRR 191 + ++ Sbjct: 174 LSKPEKK 180 >UniRef50_C0VTA8 RNA polymerase sigma factor SigE n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTA8_9CORY Length = 268 Score = 188 bits (479), Expect = 9e-47, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 8/170 (4%) Query: 17 GDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLY 75 G+ ++ LV + V L R + D D+ QE F++ +R+L S++ + F WL+ Sbjct: 89 GEMPSWADLVAEHADGVYRLAYRLSGNKQDAEDLTQETFMRVFRSLKSYKPGA-FKGWLH 147 Query: 76 RIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTI 135 RI N + + + + + P+ ++ L + R + Sbjct: 148 RITTNLFLDMVRHRSAIRMEALNETAYD------RYPGSDPTPDEAYINSNLDPTLERAL 201 Query: 136 ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +L D R+A+ L +++GLSYEEIA + +GTVRSRI R R+ + + Sbjct: 202 FNLSPDYRVAVVLCDMEGLSYEEIAETLGVKMGTVRSRIHRGRKQLREYI 251 >UniRef50_C7PJ26 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJ26_CHIPD Length = 185 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 8/187 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDS 63 + ++ L+ R+ GD KAF +LV +YQ V +V+R + D D+ QE FIK ++ L Sbjct: 2 IDEKELIPRILHGDMKAFEVLVTQYQGLVFHVVNRIINTQEDKEDICQEVFIKVHQHLRR 61 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F S TW+ RIA TA NY S + IE +F +P L+ Sbjct: 62 FEYKSRLSTWIARIAYLTAINYSKKYSSGRTVSHPEDIENYSFTD-------EHPGGLLD 114 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 +++ V R I +PE R +TL L+ SY+EI I P GTV+S +FR R+ + + Sbjct: 115 KKDVTAYVNRLIAQMPEQYRTVLTLYHLNEFSYQEIEEITGMPEGTVKSYLFRGRKLLKD 174 Query: 184 KVQPLIR 190 K+ ++ Sbjct: 175 KLGVYLK 181 >UniRef50_A7HKZ1 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKZ1_FERNB Length = 206 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 102/183 (55%), Gaps = 1/183 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 +Q LV+ + KGD++A+ L Y K+ +LV Y+ S D+ DVVQE F++ Y+ + FR Sbjct: 21 DEQRLVKALAKGDEEAYKYLYRNYASKIGALVKSYLGSDDIDDVVQEVFLRIYKNVKKFR 80 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S TW+YRIA+N N R P D+ ++ + + + + ++ Sbjct: 81 GESKLSTWIYRIAINVCNNMYRKMKGRGPVVDL-TEPMDDEDYTFQFSTDEDVQKNVTND 139 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + + + + +E+L + R + ++E+DGL+YEE+ I+D P GT++SR+ ++ I Sbjct: 140 IMYEKLRKILENLSPEDRAILFMKEIDGLTYEEVGKILDKPEGTIKSRLHYIKQTIRKAF 199 Query: 186 QPL 188 + + Sbjct: 200 KEV 202 >UniRef50_A0LQ54 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LQ54_SYNFM Length = 187 Score = 187 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 7/185 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 ++ +D +V V GD +A+ +LV RYQ + +L+ R S D D+ QE FIKAY +L Sbjct: 2 DRDSDYQVVASVLAGDTEAYAVLVKRYQKPIYNLMYRMTGSCEDALDLAQETFIKAYASL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FR F+ WLY I +N ++N+L R ++ E+ + G L E+ Sbjct: 62 HRFREGGRFFPWLYSIGLNHSRNFLRRNKARQ------TLDVEDCDPGSGLDYPGQEEDR 115 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + V R ++ LP D R A+ LR LS EEIAA + + + R+ R E + Sbjct: 116 LCARLDSMGVRRALDRLPVDYREALMLRYHQELSMEEIAAALRISLSGAKMRVHRGLEKL 175 Query: 182 DNKVQ 186 ++ Sbjct: 176 RELLE 180 >UniRef50_A4YXH9 RNA polymerase sigma factor n=10 Tax=Bradyrhizobiaceae RepID=A4YXH9_BRASO Length = 234 Score = 187 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 13/188 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 D L++R+ GD+ AF LLV R+ + ++ R V S D DVVQ+ +K + Sbjct: 49 DEDSELLDRLATGDEVAFRLLVERHIDRAYAIALRIVGSAADAEDVVQDTMLKVWTHRGR 108 Query: 64 FR-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 ++ G + F TWLYR+ N + P + +VD + + +++ Sbjct: 109 WQHGRAKFSTWLYRVVSNRCIDLRRK----PRTENVDVVPE-------VPDGKPDAVSVI 157 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 ++ ++ ++ LPE R+A+ L + +S EIA +M+ V V S + R R+ + Sbjct: 158 ERAQMSDLLESAMQRLPEQQRVAVILSYHENMSNGEIAEVMETTVTAVESLLKRGRQQLR 217 Query: 183 NKVQPLIR 190 ++ R Sbjct: 218 EMLRRHER 225 >UniRef50_A5GDM9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GDM9_GEOUR Length = 202 Score = 187 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 10/197 (5%) Query: 1 MSEQLT-----DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAF 54 MS+ D LV + G+ +F LV ++Q ++ ++ R D +V Q+ F Sbjct: 1 MSDDRDGTTDEDAALVASWRSGELSSFEALVRKHQKRMLNIAFRITGDYEDACEVTQDVF 60 Query: 55 IKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV----AQGRRPPSSDVDAIEAENFESGG 110 + A+R +DSFRG++ F TWL IAVN ++N L + S D ++ + Sbjct: 61 VAAFRGIDSFRGEARFSTWLTSIAVNLSRNRLQQVQAKRRNEAYSLDGPSVGEDCDVVPE 120 Query: 111 ALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV 170 + + +L + + I++L + R AI LR+L SY+E+ AI+ GTV Sbjct: 121 RPSSAPSALERLERLDLHEKLQGCIKALTAEFREAIVLRDLQDFSYDEMCAIIKVREGTV 180 Query: 171 RSRIFRAREAIDNKVQP 187 +SR+FRARE + + ++ Sbjct: 181 KSRLFRAREMVKDCLKR 197 >UniRef50_A9BGN8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGN8_PETMO Length = 186 Score = 187 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 1/183 (0%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSF 64 + ++ +E ++K D AF L Y K+ ++ YV ++ D +QE FI+ + ++ F Sbjct: 1 MIEEKFIEDLKKNDPDAFKKLYEEYAPKIYGVLKNYVNHDEIEDALQEVFIRIIKGINGF 60 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 +G S TW+YRIAVN KNY R +S VD + + +N +N +L Sbjct: 61 KGLSKLSTWIYRIAVNVGKNYSRKYQRSKETS-VDFEDETDQNPNIQAISNTNVKNEVLE 119 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E Q++ +E L ++ R+ I LR++DG+SY EIA IM+ P+GTV+S++ AR+ + Sbjct: 120 ELDYQMILNIMEKLDKEERLLIKLRDIDGMSYNEIAEIMEIPLGTVKSKLHYARKKLRQF 179 Query: 185 VQP 187 ++ Sbjct: 180 IEE 182 >UniRef50_Q01Q68 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q01Q68_SOLUE Length = 212 Score = 187 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 2/189 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + + LV + ++GD AF LV RY+ K+ L + D DV+QE+F+KAY L+ Sbjct: 15 IEESALVTQAREGDTAAFAELVRRYEGKIFRLAQHITQNREDAEDVLQESFMKAYEHLEQ 74 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE-AENFESGGALKEISNPENLM 122 F+GDS FYTW+ RIAVN A L + S + I+ E+ +PE Sbjct: 75 FKGDSKFYTWIVRIAVNQALMKLRRRKTDKSVSIDETIDTGEDTVVREIAAWGEDPEQSF 134 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 EEL I+ + IE L R LR+++ LS EE A + V V+SR+ RAR + Sbjct: 135 SREELGSILDKAIEGLEPLYRSVFVLRDIEELSTEETAEALGLSVPAVKSRLLRARLQLR 194 Query: 183 NKVQPLIRR 191 K+ +R Sbjct: 195 EKLTRFFKR 203 >UniRef50_A0LEX1 Transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEX1_SYNFM Length = 205 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 8/188 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS D LV +GD AF LV RYQ + + ++R + D+ QE F++ YR Sbjct: 17 MSMDDPDLALVNAAGRGDVDAFESLVGRYQGPLLNFIARILGDRGAAEDLAQEVFLRVYR 76 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 A F + TW++RIA N A L + RR ++ E + Sbjct: 77 AAPRFEARTKVSTWVFRIAYNLAMTELDRRKRRRTLAEALHRNGEEASREALADPGED-- 134 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 E ++ + ++ LP + R + LR LSY EIA I+ +G+V S +FRAR+ Sbjct: 135 -----REFQEEIASALDGLPGNQRAVLLLRLHQDLSYREIAEILGTSLGSVESLLFRARK 189 Query: 180 AIDNKVQP 187 + ++ Sbjct: 190 TLRESLRR 197 >UniRef50_A1HLQ9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLQ9_9FIRM Length = 183 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 9/181 (4%) Query: 8 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRG 66 + V + + GD+ AF LV Y+ ++ ++ V D D+ Q+ FIKA++A+ + + Sbjct: 6 KAWVSKARSGDKAAFGKLVEFYRGRIFAVAYGIVGRREDAEDIAQDTFIKAFKAISALKA 65 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 + AFY WL RIAVNT+ NY + DA E + PE E Sbjct: 66 EEAFYGWLVRIAVNTSINYKKGAKDKQFVPIDDAAE--------LFYQGETPETAAEKRE 117 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 ++ + + LP + R + LRE++GL+Y+EIAA++D P+GTV+SRI AR+ + VQ Sbjct: 118 GEAMMAKLLAELPPEHRAVLVLREIEGLAYDEIAAMLDIPLGTVKSRINHARDKLRRAVQ 177 Query: 187 P 187 Sbjct: 178 K 178 >UniRef50_C0ZCF1 RNA polymerase ECF-type sigma factor n=3 Tax=cellular organisms RepID=C0ZCF1_BREBN Length = 196 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 12/190 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD----VPDVVQEAFIKAYRA 60 +TD L+ +++G+ + + L+ RY+ K+ S V+ + D+ QE F KAY++ Sbjct: 1 MTDSQLIREIKEGNLECYAELIRRYEKKILSFVTHLLRQAHLEHIAEDICQETFYKAYKS 60 Query: 61 LDSFRG-DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + SFR ++ F TWLY IA N+ + L + ++ + PE Sbjct: 61 IHSFRDVEATFSTWLYTIARNSVLSELRKSRN-------SDVYLDDTLQVPMASPKTLPE 113 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 ++L E +V I SLPE R A+ LRE + + Y EIA I+D V +V+S +FRAR+ Sbjct: 114 QVLLRNERESMVRLAINSLPEKQRSALILREYEQMDYTEIATILDLTVSSVKSLLFRARQ 173 Query: 180 AIDNKVQPLI 189 +I +++ I Sbjct: 174 SIRGQLENYI 183 >UniRef50_A8TRK4 Sigma-24, ECF subfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRK4_9PROT Length = 216 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 4/190 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALD 62 + + LV R++ GD++AF +LV R ++ + R V D VQEAF+ A+RA+ Sbjct: 21 EAEEGALVARLKAGDERAFEILVRRESGRLLAAARRLVRDEAAAHDCVQEAFLSAFRAIG 80 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVD---AIEAENFESGGALKEISNPE 119 SF S+ WL+RI +N A L Q R + D + +A+ + +PE Sbjct: 81 SFEPRSSIGAWLHRITINAALMRLRKQRRLAETPIDDLLPSFDADGWRRDTVDVPDGDPE 140 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + +R V I+ LP+ R A+ LR+L+G S +E A + G ++ R+ RAR Sbjct: 141 SELERRRVRDFVRGKIDMLPDGYRTALVLRDLEGWSTKEAADALGIAEGAMKVRLHRARS 200 Query: 180 AIDNKVQPLI 189 + ++PL Sbjct: 201 TLKRLIEPLW 210 >UniRef50_C8R1R3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1R3_9DELT Length = 189 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 4/188 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E+ LV ++KGD++AF LV +Q ++ +L YV + D+ Q+ FI +R+L Sbjct: 5 EENESAELVRALRKGDERAFADLVRLHQGRIYNLALNYVKDEEEAKDLTQDIFITVHRSL 64 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 S R ++ F WLY++A+N +N RR ++ + L + +PE + Sbjct: 65 ASLRDEAKFGAWLYQLALNHCRNRYKRLQRRGFFRSSS---LDDPDRPLHLTDGESPEGV 121 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + + ++V R I L + I LR+++GL+Y+EI I+ P+GTV+S++ RAR A+ Sbjct: 122 LGRRDQDRLVRRAIAELAPAEKEIILLRDIEGLTYDEIGDILAIPLGTVKSKLNRARLAL 181 Query: 182 DNKVQPLI 189 ++++ ++ Sbjct: 182 KSRLEKVL 189 >UniRef50_B7IH95 RNA polymerase sigma factor n=7 Tax=Thermotogaceae RepID=B7IH95_THEAB Length = 205 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 97/183 (53%), Gaps = 1/183 (0%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 ++ ++ ++KG++ A+ L Y K+ + Y + DV DV+QE ++ Y+ + F+ Sbjct: 19 DEKNFIKALKKGEEWAYRRLYREYAPKIGAFARSYFGTDDVDDVIQEVMLRIYKGIKKFK 78 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLS 124 GDS+ TW+YRI VN ++ + V+ +E+ + ++ + + Sbjct: 79 GDSSLSTWIYRITVNVCNTLYEKYKKKNEKTFSVENNNSEDDVEIDIPDKETDVQKEVTQ 138 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E L + + + +E L E R+ I +R++DGLSY EIA I+ P GTV+SR+ ARE Sbjct: 139 EILYEKILKALEKLSEKERVLIRMRDIDGLSYSEIAEILGIPEGTVKSRLHNAREKFKKI 198 Query: 185 VQP 187 ++ Sbjct: 199 LEE 201 >UniRef50_A2U163 RNA polymerase sigma factor n=1 Tax=Polaribacter sp. MED152 RepID=A2U163_9FLAO Length = 201 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 104/189 (55%), Gaps = 3/189 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 L++ ++ +Q+G AF +L+ Y+ KV + +VP+ D D+ QE F++ +R++ Sbjct: 11 LSELDFIKELQEGKSSAFGILLNDYEQKVFNTCMSFVPNKEDAEDIAQEVFLEVFRSIHK 70 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI--EAENFESGGALKEISNPENL 121 F+G+S TW+YRIA N + ++ + + + + +I A + E +P + Sbjct: 71 FKGNSKLSTWIYRIATNKSLEFIRKKNTKKRFAFMQSIVGNAIPIDKTNYFTEFKHPGII 130 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++E +F+ I +LPE R+ TL ++DG SY+EI I + +V S +FRA++ + Sbjct: 131 LENKEQAATIFKAINTLPESQRVVFTLAKIDGKSYQEIVEITSKSLSSVESIMFRAKKNL 190 Query: 182 DNKVQPLIR 190 K+ L + Sbjct: 191 KEKLSNLNK 199 >UniRef50_A5UX09 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Roseiflexus RepID=A5UX09_ROSS1 Length = 201 Score = 186 bits (474), Expect = 3e-46, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 4/185 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 + L+ +++ D +AF +Y ++ L V + D + +Q FI A A+D F Sbjct: 3 DESALIAGLRQRDPQAFATFFEQYADRIYRLAYGIVGNEADAEEALQSTFISALEAIDRF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + TWLYRIA N A L RR P + + + PE+ +LS Sbjct: 63 EQHARLGTWLYRIAYNHALMILR---RRRPEESLPDEDGPLPMPSALTDWSTLPEDRLLS 119 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E ++I+ I LP LR A R+++G S E A I+ G ++ R+ RAR A+ + Sbjct: 120 SEAQEILRNAIAELPITLRAAFICRDIEGFSTAECAQIIGVSEGALKVRLHRARLALRER 179 Query: 185 VQPLI 189 V Sbjct: 180 VSEYF 184 >UniRef50_Q97E49 Specialized sigma subunit of RNA polymerase n=1 Tax=Clostridium acetobutylicum RepID=Q97E49_CLOAB Length = 190 Score = 186 bits (474), Expect = 3e-46, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 101/185 (54%), Gaps = 2/185 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D+ +++R +K D+ +F+ L Y+ + +L Y + D D+VQE +IK ++ + +F Sbjct: 4 DKEILKRCKKYDRASFSQLFHLYEKYLYNLCYGYTQNTSDAMDLVQEIYIKVFKNIKNFD 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + F+ W+ +I+VNT N+ R S FE L E N E +++ Sbjct: 64 ENLPFHPWVRKISVNTCLNFKRDN-RGNVMSLNSKYYDSEFEEEDRLAEDYNMEQEVVNR 122 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 ++V +I+ L D RM I LR + LSY+EIA+++D P+GTV+++I+RA+ + + Sbjct: 123 INNEVVKESIKKLTYDYRMVIMLRYYEDLSYDEIASVLDMPIGTVKTKIYRAKNVLKKSL 182 Query: 186 QPLIR 190 + + Sbjct: 183 EKKLE 187 >UniRef50_A0LYR6 RNA polymerase sigma factor n=1 Tax=Gramella forsetii KT0803 RepID=A0LYR6_GRAFK Length = 195 Score = 186 bits (474), Expect = 3e-46, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 7/186 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 TDQ L+E+V GD AF LV RYQ+ V ++ R + + + +V Q++FIKAY +L SF Sbjct: 5 TDQYLIEKVLNGDTNAFGELVDRYQNFVFTIAIRILKVTEEAEEVAQDSFIKAYDSLSSF 64 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGDS F TWLYRI + + + + R + + + L I N MLS Sbjct: 65 RGDSKFSTWLYRIVYHKSLDRIKMNKRHRTYEINEEVTED------TLNHIENGLEFMLS 118 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E QI+ I LPE I+L L+ S +EI + D ++ +++R+R+ + + Sbjct: 119 AERTQIIKNCISQLPETEAAIISLYYLEEQSVKEIVKVTDLTEDNIKIKLYRSRKKLFSL 178 Query: 185 VQPLIR 190 ++ I+ Sbjct: 179 LEGYIK 184 >UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Planctomycetaceae RepID=D2R1D3_9PLAN Length = 189 Score = 186 bits (473), Expect = 5e-46, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 107/185 (57%), Gaps = 6/185 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D+ LV+ V G+ +AF LLV RYQ ++ + + S + DVVQEA ++AY L SF Sbjct: 4 DDKHLVKLVLSGETEAFGLLVARYQDRLFTAMVHVARSRSEAEDVVQEAMVQAYTKLASF 63 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + +S+FYTWLYRIA N A + R P +S ++ E + P ML Sbjct: 64 QAESSFYTWLYRIAFNQAMTI--RRKREPLTSIDESRYGSQHEPVATSTAVDGP---MLQ 118 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E +V R I +L ++ R + +RE+DG YE+I+ I+D PVGTVRSR+ RAR + ++ Sbjct: 119 SEQAALVHRAIATLADEFRTVLVMREIDGFDYEQISQILDLPVGTVRSRLHRARLQLRDQ 178 Query: 185 VQPLI 189 ++ L+ Sbjct: 179 LKQLL 183 >UniRef50_C1A5K6 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5K6_GEMAT Length = 186 Score = 185 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 13/187 (6%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 ++ +DQ ++ RV GD+ AF++L+ RY + S D D++Q +FIKAY Sbjct: 9 NDVDSDQEVIARVMAGDRDAFSMLIGRYSDPLYRHALGMTGSPDVAEDILQTSFIKAYHH 68 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L RG F WL+RI N K++L R S D D ++P+ Sbjct: 69 LGEVRGR--FDAWLFRIVANGCKDWLKNIRRTHLSYDEDDQP----------SGYASPDE 116 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + ELRQ + + L LR A ++ ++G SYEE+A ++ VG ++ R+ RAREA Sbjct: 117 DLDRTELRQDLDSALAQLAPSLREAFIMKHVEGRSYEEMADLLGTTVGALKMRVHRAREA 176 Query: 181 IDNKVQP 187 + ++ Sbjct: 177 LQALLEE 183 >UniRef50_D2QJ11 RNA polymerase, sigma-24 subunit, ECF subfamily n=12 Tax=Bacteroidetes RepID=D2QJ11_9SPHI Length = 190 Score = 185 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 4/186 (2%) Query: 5 LTDQVLVERVQKGDQK--AFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 +TD+ ++ + + + AFNLLV +YQ K+ + + V D D+VQE FIK + +L Sbjct: 1 MTDEEILVKYRDPSSRNYAFNLLVRKYQQKIYWHIRKMVIDHDDADDLVQETFIKVWNSL 60 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + FRGDS YTW+YRIA N N+L RR + +E E E + + Sbjct: 61 EQFRGDSQLYTWVYRIATNECLNFLNK-KRRRFFLPIGDVEGELMEKLESNAAYVTSGSE 119 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 EE++ + + + LP+ R+ ++ D + YEEI+ I VG +++ A + I Sbjct: 120 PSGEEVQMKLQKALLKLPDKQRLVFNMKYFDDMKYEEISEITGTSVGALKASYHLAVKKI 179 Query: 182 DNKVQP 187 ++ + Sbjct: 180 EDFITK 185 >UniRef50_A6GAU3 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAU3_9DELT Length = 205 Score = 185 bits (472), Expect = 6e-46, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 12/186 (6%) Query: 4 QLTDQVLVERVQKG-DQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 ++D+ LV G D+ AF LV R+Q KV L+ R D+ QE F++AYR L Sbjct: 24 AMSDEELVTLAGSGRDKSAFAELVRRHQGKVRGLLLRLSADPTLADDLAQEVFLRAYRGL 83 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F G S F TWLYRIA N N+ + + + G Sbjct: 84 VGFEGRSRFSTWLYRIAYNVFLNH-RTRSKELAALPTGFESQAAAPEGELSPS------- 135 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++R+ + I LPE R +TL L+ +SY EIA ++D P+GTV++ + RA++ + Sbjct: 136 --RFDMRRDLAAAIAGLPERYRAVVTLYYLEDVSYPEIAEVLDLPLGTVKTHLHRAKKLL 193 Query: 182 DNKVQP 187 +++ Sbjct: 194 RERLRD 199 >UniRef50_D1CFG7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFG7_THET1 Length = 204 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 7/170 (4%) Query: 29 YQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 Y + R + D D+VQE ++KA+R DSF+ + WL+RI NT N Sbjct: 22 YIDSLYRTALRLTNNPADAEDLVQETYLKAHRFRDSFKPGTNLRAWLFRILTNTFINDYR 81 Query: 88 AQGRRPPSSDVDAIEAENFE------SGGALKEISNPENLMLSEELRQIVFRTIESLPED 141 + R+P ++++ + +PE +L+ + + V ++SLPE Sbjct: 82 KKSRQPQTTEMGELGEMEDYYLFRRVKEAGESLGEDPEQTVLNMFVDEEVREALDSLPEQ 141 Query: 142 LRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 R+ + L +++G SY+EIA ++ PVGTV SR+ R R+ + K+ R+ Sbjct: 142 YRLPVLLADVEGFSYKEIADVLGIPVGTVMSRLHRGRKQLQQKLWEYARQ 191 >UniRef50_A9GBY9 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBY9_SORC5 Length = 206 Score = 185 bits (471), Expect = 7e-46, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 6/192 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E++TD+ L+ R Q GD+ AF LV R++ + + + R V D+VQ+ F+K ++ Sbjct: 7 EEVTDEALMMRFQGGDRAAFAGLVRRHKTSIYNFILRQVRGPAIAEDLVQDVFVKIVQSA 66 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQG-RRPPSSDVDAIEAENFESGGALKEISNPEN 120 F+ ++ F TW + IA N ++L RR PS D + E + + G P+ Sbjct: 67 SDFKHEARFTTWAFAIARNVCIDHLRKMSLRRHPSLDQGSGEGGDGPTLGERTADPAPQA 126 Query: 121 LMLS----EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 + E+ Q + R +E LP + R LRE+ + +++IA I+ P TV+SR+ Sbjct: 127 AVDRVAIGTEMGQRIVRAVEGLPHEQREVFLLREIGHVPFKDIAHIVGVPENTVKSRMRY 186 Query: 177 AREAIDNKVQPL 188 A E + + Sbjct: 187 ALERLQEALSEY 198 >UniRef50_D0MDB7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDB7_RHOM4 Length = 198 Score = 185 bits (471), Expect = 8e-46, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 1/181 (0%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D+ V +G++ A+ L+ +Y+ + ++R V D+ D+VQE FIKA+ AL ++ Sbjct: 12 DRAFVAEALQGNEAAYQALMDKYRPALRRHIARIVRDPRDLDDLVQETFIKAFTALSTYS 71 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 + AF TWLY+IA N A +YL + R S D E P+ ++ + Sbjct: 72 TEYAFSTWLYKIATNHAIDYLRRKKLRTLSLDEPIQTKEGTLERELADTTYFPDRHIVED 131 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + R ++ I +LPE R I +R SYEEIA ++ P+GTV++ IFRAR + + Sbjct: 132 QRRMLLQEAINALPEKYRRVIVMRHQQEKSYEEIAEELNLPLGTVKAHIFRARRLLYKYL 191 Query: 186 Q 186 + Sbjct: 192 R 192 >UniRef50_Q93RF4 Orf protein n=1 Tax=Treponema medium RepID=Q93RF4_TREMD Length = 215 Score = 185 bits (470), Expect = 9e-46, Method: Composition-based stats. Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 11/188 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 +++ L D + + V G+ +AF +LV +YQ +V L + + D D VQ+ +KAY Sbjct: 16 LNQTLRDYEVCKAVLNGNTQAFAVLVAQYQKRVYMLGLSFFDNTDDCEDFVQDVMLKAYA 75 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FR ++ F TWL RIA NTA N A+ RR S D E E NPE Sbjct: 76 ALGTFRAEAPFATWLMRIAYNTAINS--AKKRRSYMSLADGTEIEYR--------GDNPE 125 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L+E + V + +LP++ R+ I L +SY +IAA+ + P+ T++S IFRA++ Sbjct: 126 EKHLNECIILSVREAVNNLPDNYRICIDLYFFYDMSYTDIAAVTELPLNTIKSHIFRAKK 185 Query: 180 AIDNKVQP 187 + ++ Sbjct: 186 LLREYLKE 193 >UniRef50_Q2BEM6 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BEM6_9BACI Length = 213 Score = 185 bits (470), Expect = 9e-46, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 11/186 (5%) Query: 4 QLTDQV-LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + ++ +++V G+++A+ ++ +Y++ + + + R + D D+VQEAFIK Y L Sbjct: 25 HMEEEAFWIKQVLAGNKQAYGHIINKYKNPLYATILRMTKNPQDAQDLVQEAFIKIYNQL 84 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + AF +WLYR+AVN + + + ++++ A N +PE + Sbjct: 85 GKYDQKGAFSSWLYRVAVNHCMDEFRKKSSQIKQAEINEASAVN---------TKHPEVI 135 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 +L +E + V + I +LPED R+ I LR + L YEEIA P+ VR+++ RA++ + Sbjct: 136 LLKKEKNRQVEKLISTLPEDERIIILLRYANELPYEEIAETTGMPLSMVRNKLHRAKKKM 195 Query: 182 DNKVQP 187 V+ Sbjct: 196 RETVKK 201 >UniRef50_A6LL38 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Thermotogaceae RepID=A6LL38_THEM4 Length = 203 Score = 185 bits (470), Expect = 9e-46, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 5/192 (2%) Query: 1 MSEQ-----LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFI 55 M+E ++ ++ ++KGD+ A+ L + K+ S Y + DV D+VQE Sbjct: 8 MNEDGQISWKNEKKFIKALKKGDEWAYRRLYRDFAPKIGSFAKTYFGTDDVDDIVQEVMF 67 Query: 56 KAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI 115 + ++ + F+G+S+ TW+YRI +N Y ++ + + Sbjct: 68 RVFKGIKKFKGNSSLSTWIYRITMNVCNTYYEKYKKKNEKVFSVETDDTEDIEVDIPDKE 127 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 ++ + + SE L + + + +E LPE R+ I LR++D LSY+EIA I++ P GTV+SR+ Sbjct: 128 TDVQKEVESEILYEKINKALEKLPERDRVLIKLRDIDELSYQEIADILNIPEGTVKSRLH 187 Query: 176 RAREAIDNKVQP 187 AR+ ++ Sbjct: 188 NARKLFQKILKE 199 >UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Verrucomicrobia RepID=B1ZXG6_OPITP Length = 247 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 6/187 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D LV R +GD+ AF ++ RY+ K+ ++ + + D ++ Q+ FI+A+R L +FR Sbjct: 31 DDELVRRFAQGDEAAFVEIMERYRGKIFTVTLGLLRNHADAEEITQDTFIRAHRGLANFR 90 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE-----ISNPEN 120 GDS+ TWLYRIAVN A+N RR + A + +S + + +P Sbjct: 91 GDSSLATWLYRIAVNLARNRYWYFFRRRRQDSLSLDCALSEDSAATFADLVADVVQDPAQ 150 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ E +V +E L R +TLR + SYEEIA + VGTV+SRI RARE Sbjct: 151 ETVAGEFSTLVDLCMEKLDARHREILTLRNVLNRSYEEIATTLGINVGTVKSRIARAREN 210 Query: 181 IDNKVQP 187 + + Sbjct: 211 LRTLLAE 217 >UniRef50_B4WJK4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WJK4_9SYNE Length = 224 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 4 QLTDQVLVERVQK---GDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 QL++ L+ R QK D+ AF LV RY + L+ D D+ QE +I+ Y+ Sbjct: 29 QLSNSELILRCQKLDSRDRTAFEELVARYHRYIDKLLFDLASDWLDRTDLAQEVWIRVYK 88 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE--AENFESGGALKEISN 117 ++ + F +WL RI N + L + R S +DA + Sbjct: 89 SIHKLNDPTKFKSWLSRITTNLFYDELRKRKRFQRSVSLDAPRYLNNRHYEWELPSDQPT 148 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P + +L+ E R + + + LP+ R I LREL GLSYEEIA++ +GTV+SRI RA Sbjct: 149 PTDDVLTREFRDYLEQAMSELPQTFRETIALRELQGLSYEEIASMTGVSLGTVKSRIARA 208 Query: 178 REAIDNKV 185 R + K+ Sbjct: 209 RRKLQEKL 216 >UniRef50_Q1IS06 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=Q1IS06_ACIBL Length = 198 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 3/190 (1%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 EQL+D ++ RV +GD AF+ LV +++ + S + R + ++ QE F++ YR+ Sbjct: 9 EQLSDAEVMLRVAQGDDAAFDYLVDKFRRPIISFMYRTTHNQATAEELAQEVFLRVYRSR 68 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLV--AQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +S+ + F TWLYRIA N A N R +D + E+ + E Sbjct: 69 ESYEASAKFTTWLYRIATNLAVNNARDTKHERAEAQVSLDEPDEESGSTMDVADSRPTVE 128 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 +L E + + +E LPE RMA+ + + + Y+EIAA++ +S +FRA E Sbjct: 129 QEILRNERMTAIRKVVEGLPERQRMAVLMHKYQNMDYKEIAAVLKLSESATKSLLFRAYE 188 Query: 180 AIDNKVQPLI 189 ++ ++ + Sbjct: 189 SLRESLKQYL 198 >UniRef50_D1C360 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C360_SPHTD Length = 204 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 14/190 (7%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 M+++ ++ + R + ++A + + + R + D D+VQE +++A+R Sbjct: 1 MNQEQSE---IPRAKL-QEEALS-----HIDALYRTAYRMTGNAMDAEDLVQETYLRAFR 51 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEA----ENFESGGALKEI 115 +L FR + WL++I N N + RRP S+ +D +E + G Sbjct: 52 SLHQFRPGTNLRAWLFKILTNAFINDYRKRSRRPRSTSLDNVEDYYLYSHLIDSGIQPAS 111 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 + PE+ +L+ + V +ESLP++ R + L +++G SY EIA IM PVGTV SR+ Sbjct: 112 TRPEDEVLANIPDEAVIAALESLPDEFRQVVLLADVEGFSYREIADIMSTPVGTVMSRLH 171 Query: 176 RAREAIDNKV 185 RAR + + Sbjct: 172 RARRRLQGAI 181 >UniRef50_C0ZGW3 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGW3_BREBN Length = 189 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 9/183 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 +D +++R+ +GD +A+ L+ RYQH + + + V + D D+ QE F+KAY L +F Sbjct: 3 SDAEIIQRILQGDIEAYRDLIQRYQHMIYVFIYKMVNNRSDAEDLTQEVFVKAYEKLSTF 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RGDS F +WL+ +A N + ++L + E + +P+ +++ Sbjct: 63 RGDSQFSSWLHTLARNKSIDFLRRRKYH--------DSDEQLAYVPSNTRDESPQESLMT 114 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E R+ + L + R I LR +E+IA ++ T R R RAR+ + Sbjct: 115 KEQRREIQEAFALLSDSYREVIVLRCTHEYPFEKIATLLGIAESTARVRYLRARQELAKL 174 Query: 185 VQP 187 + Sbjct: 175 LSR 177 >UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus RepID=Q1IW21_DEIGD Length = 194 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 91/186 (48%), Gaps = 15/186 (8%) Query: 4 QLTDQVLVERVQK---GDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 +LTD LV + AF +LV R+ +V + + V G DVVQE F+ YR Sbjct: 15 ELTDAQLVPLAAHPGPYREAAFEVLVRRHAPRVHRIAAGTVGPGAADDVVQEVFVSVYRN 74 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L SFRG + F TWL+RI +N A R S +A E L NP Sbjct: 75 LASFRGQAQFTTWLHRITLNAC---QRALTARQHLSLDEAPE---------LPAPHNPVQ 122 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 +LR+ + + LP + R A+TLREL GL Y EIA ++ +GTV+SR+ R R A Sbjct: 123 TGEQADLRERLAWAMRQLPPEQRDAVTLRELSGLDYAEIAEVLGVELGTVKSRLNRGRAA 182 Query: 181 IDNKVQ 186 + + Sbjct: 183 LRALLA 188 >UniRef50_B8I824 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Clostridium RepID=B8I824_CLOCE Length = 184 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 10/184 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 LTD LV + GD AF +V+RY+ V S+V + + +V DV QE FI+ YR+LD Sbjct: 2 ALTDAELVSQCVNGDSSAFEEIVIRYKRLVYSVVYKMISDKEEVHDVCQEVFIRLYRSLD 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 + + TW+ +I N + L + ++ G EI PE + Sbjct: 62 KYNPEFKMSTWIVKITSNLCLDTLRKKK---------QDTVTLDDAIGVSSEIDTPEEAL 112 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + + Q++ + ++ LP+ ++ I L G+SYEE+ I++ P+ +++R++RAR + Sbjct: 113 IKHQRSQLIKKAVDELPDKYKVLIVLFHNRGMSYEEMTKILNEPMSIIKNRLYRARLMLK 172 Query: 183 NKVQ 186 K++ Sbjct: 173 EKLE 176 >UniRef50_D2Q537 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Actinomycetales RepID=D2Q537_9ACTO Length = 237 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 7/185 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + + D L+ G+ F LV R++ ++ ++ R + + D +QEAFI A+R Sbjct: 25 DTMDDHELLRLHVAGNPDTFGYLVKRHRDRMWAVAIRTLGEPEEAADALQEAFISAFRRA 84 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 DSFRGD+ TWL+RI VN + + + R + + +G A + Sbjct: 85 DSFRGDAKVTTWLHRIVVNACLDRIRRRQVRAADPLPEDEDRAAELAGPAEDDP------ 138 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 E R V ++ + D R A+ L +++G S EE AAI+ C GTV+SR R R + Sbjct: 139 AEVRERRLDVLNALKQINSDQRSALVLVDMEGYSIEEAAAILGCAPGTVKSRCARGRARL 198 Query: 182 DNKVQ 186 ++ Sbjct: 199 LPLLR 203 >UniRef50_UPI00016C5256 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5256 Length = 232 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 6/185 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 +D+ L+ R++ G++ F +LV RY+ ++ + RY+ D DV Q F++ Y L Sbjct: 17 PPESDEQLLARLRAGERDCFGVLVRRYERELFGYLRRYLGDDDLADDVFQNTFVQVYTKL 76 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQ-----GRRPPSSDVDAIEAENFESGGALKEIS 116 + D WLY IA N A + L + R + D Sbjct: 77 GQYEPDRPVRPWLYAIATNQAIDALRRRNRRADQRADVVTTADEDGQPRPLFELLPAAGD 136 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 P E R++V ++ LPE LR + L GL Y ++A + PVGTV+SR+ Sbjct: 137 EPPAAADRAEQRELVRAAVDRLPELLRQVVLLAYFQGLKYRDVADALGIPVGTVKSRLHA 196 Query: 177 AREAI 181 A + Sbjct: 197 ALAKL 201 >UniRef50_D2QGU1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGU1_9SPHI Length = 196 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 110/192 (57%), Gaps = 2/192 (1%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M++ VL+E +++GDQ+AF + R + +V +L YV + D ++ Q+ +++ +R Sbjct: 1 MTDTNDLAVLLEAIRQGDQEAFRQVYERTKTRVFNLALGYVRNREDAEEITQDVYVELFR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-FESGGALKEISNP 118 ++ SF G+++ TWLYRIAVN + ++L Q R+ + + ++ N E+ + S+P Sbjct: 61 SVASFNGNASGTTWLYRIAVNKSLDFLKYQKRQKRFAFLTSLFDSNTGETLYQPTDFSHP 120 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + ++E I+F+ I+ L E + A L +++GL+ E AAIM VG V S + RA Sbjct: 121 GVTLENKEQAAILFKAIDRLSEKQKTAYILTKVEGLTNIETAAIMAISVGAVESLLQRAT 180 Query: 179 EAIDNKVQPLIR 190 + + ++ + + Sbjct: 181 DNLKKQLAGVYK 192 >UniRef50_C1ZG18 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZG18_PLALI Length = 211 Score = 183 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 6/193 (3%) Query: 1 MSE--QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKA 57 M++ +Q L+ER++ G+++AF + V RY + + + R + D + +QEAF+ A Sbjct: 12 MNDVPAEDEQQLIERLRGGEREAFEMFVRRYCNPMYYVARRILRHDDDAREAMQEAFLSA 71 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLV---AQGRRPPSSDVDAIEAENFESGGALKE 114 +R + F S F TWL+RI VN A L + +R + + ++ Sbjct: 72 FRKIHQFDARSQFSTWLHRIVVNAALKKLQVRERREKRTIDAFLPTFTDDDHHRIEPRCP 131 Query: 115 ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 I + E L ELR+++ + I LPE R + LR+++GL EE A + V++R+ Sbjct: 132 ILSSEELAQRNELRELLHQKINELPEIYRTVLLLRDIEGLDTEETAQSLQTTTDVVKTRL 191 Query: 175 FRAREAIDNKVQP 187 RAR+A+ ++P Sbjct: 192 HRARQALRTLLEP 204 >UniRef50_D1C1C9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1C9_SPHTD Length = 224 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 3/182 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFR 65 D+ L+ ++GD AFN LV RY+ V + R + + DV Q+ F++A+ AL+ F Sbjct: 24 DEELIAAAREGDLAAFNALVARYERAVYGVALRLLREPEAAADVTQDTFVRAHAALEQFV 83 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G SA WL RIA N + + L RR P+ +DA E ++PE + Sbjct: 84 GGSA-RAWLLRIATNRSYDLL-RYRRRRPAESLDARPVEEEPVWAVETPPADPEAFATRQ 141 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 EL + + +L +D R+A+ L ++ G SY+EIA++ +GTV+SRI R R + + Sbjct: 142 ELSTRLEAALAALTDDQRVAVVLYDVQGYSYDEIASLTGATLGTVKSRIHRGRARLRELL 201 Query: 186 QP 187 + Sbjct: 202 RQ 203 >UniRef50_Q47E65 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Dechloromonas aromatica RCB RepID=Q47E65_DECAR Length = 226 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 4/186 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRAL 61 + T+ L +V GD AF L+ R+ + + D ++VQEA++ AYRAL Sbjct: 11 QHDTELELARQVAAGDSDAFRTLMRRHNQTLYRTARAVLRNDADAEEIVQEAWLLAYRAL 70 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FRG++ TWL RI VN A L + + + + AEN PE+ Sbjct: 71 HGFRGEAKLSTWLIRIVVNLA---LRRRQGQMRDTTIRVDSAENEVEDMHPSPTETPESN 127 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ELR+++ I+ LP+ R LR ++ L EE A+ + P TVR+R FRAR + Sbjct: 128 AANGELRRLLESHIDRLPDMYREVFILRGVEELDVEETASALGLPEATVRTRFFRARHQL 187 Query: 182 DNKVQP 187 + Sbjct: 188 RETLAQ 193 >UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W0_SPHTD Length = 237 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 3/190 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S +D+ L R+ GD A LV RY + + + R D+VQE F + Sbjct: 8 SIDTSDEALYRRLLAGDVAALEALVPRYHGPLLAFLYRLTGDRQQAEDLVQETFTRIVTY 67 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + F W + +A N A ++L RR + ++ + Sbjct: 68 RG--EPPTRFRPWAFTVARNIALDHLRTAARRQAIAPRVTPSEDDDPFTTVPDPDPGALD 125 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L+L ++ R+ V ++ LP R + LR LS EIA + VGTV+SR+F Sbjct: 126 LVLRDDDRRTVAAALQQLPPHQRETVVLRFYHDLSLNEIAEVTGVAVGTVKSRLFHGLRR 185 Query: 181 IDNKVQPLIR 190 + + R Sbjct: 186 LKTLLIDEYR 195 >UniRef50_A5FKW0 RNA polymerase sigma factor n=4 Tax=Flavobacteriales RepID=A5FKW0_FLAJ1 Length = 195 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 8/191 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 MS + DQ ++++ +G+ AF +LV RY+ + +L + V + + +V Q+ FIK Y Sbjct: 1 MS-TINDQHYIDKILQGETNAFAVLVDRYKDMIFTLALKMVKNREEAEEVAQDTFIKIYS 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +L+ F+GDS F TW+Y+IA NT + L + + +D S +K + N Sbjct: 60 SLNKFKGDSKFSTWIYKIAYNTCLDRLKKSKKEDLNISIDDF------SSHLIKTMDNAL 113 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + +E +Q + + + LP + +TL D + EEI IM+ + ++FR+R+ Sbjct: 114 STLEEKERKQTIQKCLNLLPNEENFLLTLFYFDDQNLEEIGKIMNISANNAKVKLFRSRQ 173 Query: 180 AIDNKVQPLIR 190 + ++ + Sbjct: 174 KLAVILRQQLE 184 >UniRef50_B9XQJ1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XQJ1_9BACT Length = 183 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 15/188 (7%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M+ ++V + + ++GD +AF L+ YQ + +L R S D D+ Q+ FI+A+R Sbjct: 1 MAVIDEEKVWIGKSRQGDHEAFEALIKCYQKMIHALTYRMTGSLTDGEDLAQDTFIQAFR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + ++RGDS F +WLYRI +N N+ +Q R+ + E G L + P+ Sbjct: 61 QIHTYRGDSKFSSWLYRIGINLCLNWRKSQQRQQK---------AHEEYGQNLDTETTPD 111 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 Q V + L R AI L DGL++ E A ++ C TV RIF AR Sbjct: 112 GK-----RAQQVQEALMKLRPKQRAAIVLTTYDGLNHAEAAQVLGCSETTVSWRIFAART 166 Query: 180 AIDNKVQP 187 + + Sbjct: 167 KLKKLLSK 174 >UniRef50_A1ZQJ0 RNA polymerase ECF-type sigma factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQJ0_9SPHI Length = 205 Score = 182 bits (464), Expect = 4e-45, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 7/192 (3%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 + + D++LV + + GD+KAFN LV + +++ + +Y D + Q FI Y+ L Sbjct: 2 QMVHDEMLVNKARNGDRKAFNHLVNLWNNRIYNFTYKYFNDHDLAMEATQRTFIAVYKNL 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGG------ALKEI 115 + F +WLYRIA N RR S + + E+ Sbjct: 62 QKLEQPARFRSWLYRIASNNCHEEERRNKRRWTVSLFKSAQKAGEEAPPWGKYEKDTNRF 121 Query: 116 SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 175 +NP+ EL Q++ R ++ L E+ R+ + ++E +GL ++EIA + T +SR++ Sbjct: 122 ANPDQQYQKTELEQVLHRALKELSEEQRIVVIMKEYEGLKFKEIAEALAISENTAKSRMY 181 Query: 176 RAREAIDNKVQP 187 A+ + Sbjct: 182 YGLNALRKVLNK 193 >UniRef50_A4XDI9 Sigma-70 region 2 domain protein n=16 Tax=Actinomycetales RepID=A4XDI9_SALTO Length = 244 Score = 182 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 6/173 (3%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 +E +D L+ GD+ AF L+ R+Q ++ ++ R + + D +Q+A + A+RA Sbjct: 19 TEPASDLDLLRAHVAGDRDAFAELLHRHQDRLWAVALRTLGDREEAADALQDALLSAHRA 78 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 FRGDSA TWL+RI VN + + + P D + +GGA P+ Sbjct: 79 AGRFRGDSAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVHDVAGATGGAEPAAPAPD- 137 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSR 173 + +V + +LP + R A+ L ++ G E+A I+D GTV+SR Sbjct: 138 ----HDTALVVREALAALPVEQRAALILVDVQGYPVAEVARILDVAEGTVKSR 186 >UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G5V6_CHLAD Length = 202 Score = 182 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 6/186 (3%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 +L+D+ L+E V GD A L R+ V L R + + + +VVQE F + ++ Sbjct: 12 RLSDETLMELVAAGDSTALAQLYDRHARVVYGLALRMLGAAEPAEEVVQETFWRVWKRAA 71 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +F+ AF W++ IA N + L + RP +S A ++ N E Sbjct: 72 TFQMQGAFLPWMFGIARNLCIDELRRRQVRPMTS-----GAGEELLTSLPDQMQNVEQAT 126 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L E R+++ + LP D R I L GLS EIA + P+GT+++RI + + Sbjct: 127 LEAERRRLISNALADLPPDQREVIELAYFGGLSQREIAEHLQSPLGTIKTRIRLGLQKLK 186 Query: 183 NKVQPL 188 + Sbjct: 187 QALLHY 192 >UniRef50_B9L046 Group3 RNA polymerase sigma factor n=2 Tax=Thermomicrobia (class) RepID=B9L046_THERP Length = 313 Score = 182 bits (463), Expect = 6e-45, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 + V R + GD AF LL +Y+ V + R V + + D+ QE FIKAYRAL Sbjct: 128 DELRCVARAKAGDHDAFALLYQKYERSVYQFIYRMVGNAEEASDLTQECFIKAYRALPQT 187 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 D WL RIA N + A RR + ++++ + +PE +L Sbjct: 188 TDDLNVGGWLRRIATNVCLD---ALRRRNRLRWLRLDHLASWQNSSLRSDAIDPERALLE 244 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E + V R ++ L R A+ LRE +G S EEIA I+ +S +FRARE Sbjct: 245 TETQDTVERVLQRLQPHYRAALILREYEGYSSEEIAQILGISRSAAKSLLFRAREEFRRL 304 Query: 185 VQPLIRR 191 + + + Sbjct: 305 FREMEAQ 311 >UniRef50_Q7MU87 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Porphyromonas gingivalis RepID=Q7MU87_PORGI Length = 174 Score = 182 bits (463), Expect = 6e-45, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 18/190 (9%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 E+ +D + VQ GD ++F LV RY + +L+ R + D D++Q+ F+KA+R + Sbjct: 2 EKQSDSYYISAVQAGDTESFAPLVERYSDMLYALLCRLLQDEEDAADLLQDTFVKAFRHI 61 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F G S+F TW+YRIA N A ++L E + +PE Sbjct: 62 SRFDGRSSFSTWIYRIAYNEAIDHLRRHK---AYVTDRVEELPDVPDEDLEPSGEDPE-- 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 ++ + ++SLP + + + D LS +IA + V+ ++ R + Sbjct: 117 --------LLQQALDSLPAADKALLLMFYSDDLSVRDIAEVTGMSESNVKVKLHR----L 164 Query: 182 DNKVQPLIRR 191 K+ ++R+ Sbjct: 165 RTKLYKMMRK 174 >UniRef50_B3EM30 RNA polymerase sigma factor n=8 Tax=Chlorobiaceae RepID=B3EM30_CHLPB Length = 212 Score = 182 bits (463), Expect = 6e-45, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 3/173 (1%) Query: 22 FNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 F+ +V +Q V + R+V D D+ QE FI+AYR+L++FR +S TWLYRIAV Sbjct: 39 FSTIVAEHQDMVLNTCFRFVLNREDAEDIAQEVFIEAYRSLENFRKESKLSTWLYRIAVT 98 Query: 81 TAKNYLVAQGRRPPSSDVDAI--EAENFESGGALKEISNPENLMLSEELRQIVFRTIESL 138 + ++L + R+ S + + + E + PE ++ E +I+ + SL Sbjct: 99 KSLDHLRKKKRKKRFSSLKRVIGLHDPTEELALPSSTATPEEVLSGNERTEILQDALSSL 158 Query: 139 PEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 P++ + A L + DG S +EIA IM V V S + RA++++ NK++ ++ Sbjct: 159 PDNQKTAFLLSKYDGYSNQEIADIMQTTVSAVESLVHRAKKSLQNKLEKHYKK 211 >UniRef50_C6N7I6 RNA polymerase sigma E factor RpoE n=2 Tax=Legionella RepID=C6N7I6_9GAMM Length = 220 Score = 181 bits (462), Expect = 7e-45, Method: Composition-based stats. Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 10/192 (5%) Query: 1 MSEQ--LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKA 57 M+ +D+ LV Q+G++ A+NLL+ RY +K+ ++ ++ V D+VQE +K Sbjct: 36 MNNTASYSDEDLVNLAQQGNRNAYNLLLARYNNKIQQIIYFHINDQAYVNDLVQEVLLKV 95 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 YR L F+ S F TWLYRI NT KN+ + R +F + Sbjct: 96 YRYLHYFKEKSQFSTWLYRITHNTIKNHYRSMSIRMGR-------EVDFVDTQEHSTHQS 148 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 PE +++S E + + I L +DLR+ + DG +YE IA MDCP+GTVRSRIFRA Sbjct: 149 PEYVLISIEFGEQLELAISRLSDDLRICYGMHIFDGQTYENIAKKMDCPIGTVRSRIFRA 208 Query: 178 REAIDNKVQPLI 189 R+ + + + Sbjct: 209 RKLLMASIADFV 220 >UniRef50_Q127J2 Sigma-24 (FecI-like) n=6 Tax=Burkholderiales RepID=Q127J2_POLSJ Length = 239 Score = 181 bits (461), Expect = 9e-45, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 S+ +D LV G+ AF ++ RY + + S D D +QEA+++A+RA Sbjct: 12 SDVSSDAELVSLSIAGNDLAFAQIMRRYNRLLFRTARSILKSEDDTQDALQEAYLRAWRA 71 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQ----GRRPPSSDVDAIEAENFESGGALKEIS 116 L +FR ++ TWL RI N A L R P S + E E Sbjct: 72 LATFRAEARLSTWLVRIVANEALGRLRRNGAQTARVVPLSASVDADDETPEMQMQANPND 131 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 PE ++ ++RQ + I++LP+ R LR ++ +S EE+A ++ P TVR+R FR Sbjct: 132 QPEPSVMRAQIRQQIEARIDTLPDAFRTVFMLRGVEEMSVEEVALVLGIPEATVRTRFFR 191 Query: 177 AREAIDNKVQP 187 AR + + Sbjct: 192 ARSMLREGLSR 202 >UniRef50_B8GD43 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Chloroflexi (class) RepID=B8GD43_CHLAD Length = 203 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 2/185 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEA-FIKAYRALD 62 +Q L+ Q GD AFN LV Y+ ++ +L R + D + FI A+R L Sbjct: 2 ADEEQRLIRSAQTGDLDAFNQLVRLYETRIYNLCYRMLGDADAAADATQDAFIAAFRNLR 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 SFRG + F WL RIA N + L A+ RRP S + E G + ++ M Sbjct: 62 SFRGGT-FKAWLLRIATNACYDVLRARKRRPAVSLEREHDEEERHRGELPDPGESLDDTM 120 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + +EL + R + LP+D R+ I L ++ GL+YEEIA + +GTV+SR+ RAR + Sbjct: 121 VRQELGAAIQRALAELPDDQRIVIILSDIQGLAYEEIARVTGVQLGTVKSRLSRARAKLR 180 Query: 183 NKVQP 187 + ++ Sbjct: 181 DILRA 185 >UniRef50_A6TSA9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSA9_ALKMQ Length = 187 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 94/185 (50%), Gaps = 11/185 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 +++D+ L++ Q + + F+LL +YQ + L Y S D D++QE +IK Y+++ Sbjct: 7 EVSDEKLIKLCQDQNMEGFDLLYTKYQSYIYRLCYNYTHSKEDSLDLLQEVYIKIYQSIP 66 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F W+ +I +NT N+ A+ + ++ N E + Sbjct: 67 RFEKGHPLSPWIKKITINTCHNFARAKK----------PTPLPLDPTLSIPSADNVELAL 116 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + +++ +I LP +++ I LR ++ +SY+EI+ + P+GTV++ +FR R+ + Sbjct: 117 SYKSTEKLLKTSISQLPHEIKSVILLRHVEAMSYQEISQCLSIPIGTVKTHLFRGRKHLK 176 Query: 183 NKVQP 187 ++++ Sbjct: 177 DQLKK 181 >UniRef50_C6CYB2 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Bacillales RepID=C6CYB2_PAESJ Length = 182 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 11/182 (6%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDS 68 L+ Q GD+ A L+ + V + + D D QEA I+ Y + S+ + Sbjct: 6 LIRAAQSGDRDALITLLREIETHVYRTAYYILNNEQDAMDAAQEALIRIYTKIGSYEEKA 65 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 F TW+ RI N + P+ +D E +E N E+ ++S Sbjct: 66 QFKTWIQRIVTNICIDKFRRSK---PTVSIDEHEM-------VFREKQNVEDEVMSAYAV 115 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 Q + + I+ LPE R + LR L SY EIA +D P+ TV+S +FRAR+ + + Sbjct: 116 QDIRKAIDKLPEHHRAVVVLRYLQDFSYNEIADSLDLPLNTVKSYLFRARQQLQTLLHDY 175 Query: 189 IR 190 + Sbjct: 176 QK 177 >UniRef50_C0Z9P5 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9P5_BREBN Length = 186 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 DQ V++V GD AF LV +Y+++V SL+ R S D D Q AF+ AY++L + Sbjct: 3 EDQEWVKQVLGGDPHAFAHLVNKYKYRVCSLLVRMGNSPEDAEDFAQTAFVNAYKSLQQY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 F WL +IA+N ++ P ES A NPE+ L+ Sbjct: 63 DASRPFSAWLNKIAINCCLQAWRTAQKKNPIVPFQ-------ESMKAHTNYENPESFYLA 115 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E + +F + L R+ +TLR + LSY+EIA M PV TV+ ++RA++ + Sbjct: 116 REKQNEIFAVMGELASHYRIVLTLRYFEELSYQEIAETMQVPVTTVQVHLYRAKKKLREL 175 Query: 185 VQP 187 + Sbjct: 176 MGK 178 >UniRef50_Q82IU5 RNA polymerase sigma factor n=3 Tax=Streptomyces RepID=Q82IU5_STRAW Length = 227 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 8/182 (4%) Query: 12 ERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAF 70 ER + ++ A L ++ S R + D D+VQE + KAY + FR + Sbjct: 31 ERSARFERDALEFL-----DQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNL 85 Query: 71 YTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI--SNPENLMLSEELR 128 WLYRI NT N + R P S + IE + + E+ L Sbjct: 86 KAWLYRILTNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPD 145 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 V ++++PE+ R+A+ L +++G +Y+EIA IM P+GTV SR+ R R + ++ Sbjct: 146 SDVKSALQAIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDY 205 Query: 189 IR 190 R Sbjct: 206 AR 207 >UniRef50_C0ZJR5 RNA polymerase ECF-type sigma factor n=2 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJR5_BREBN Length = 188 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 11/185 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+ L+E++Q G+ + ++ ++ RY K+ + + + + + D D+ Q+ F K + L + Sbjct: 3 DDRELIEQIQAGNHQLYSQIIDRYNGKIVTYLYKMIGNMPDAQDLAQDVFTKTFYLLKDY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 R + F +WLYRIA N + + + R ++ V+ + + PE +L Sbjct: 63 RPEHKFSSWLYRIASNHCLDEIRRRKRTEQTAIVEEQ----------IVDPETPETALLK 112 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E + +I L E+ R L L LSY EI+ + V+ R+FRAR+ + Sbjct: 113 KERDAQLEHSIMLLDEEYREVFVLHYLQRLSYREISERLSLTESAVQMRLFRARKEMKKS 172 Query: 185 VQPLI 189 + + Sbjct: 173 LTKTM 177 >UniRef50_C8PSN5 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSN5_9SPIO Length = 219 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 11/188 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 +++ L D + + V G+ +AF +L +YQ +V L + + D D VQ+ +KAY Sbjct: 18 LNQALRDYEVCKAVLNGNTQAFAILAAQYQKRVYMLGLSFFDNTDDCEDFVQDVMLKAYS 77 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +FR ++ F TWL RIA NTA N + + R +D IE NPE Sbjct: 78 ALGTFRAEAPFATWLMRIAYNTALNSVKKRNRYSSLADGTEIEYR----------GDNPE 127 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L+E + V + SLP++ R+ I L +SY +IAA+ + P+ T++S IFRA++ Sbjct: 128 EKHLNECIVLSVREAVNSLPDNYRICIDLYFFYDMSYTDIAAVTELPLNTIKSHIFRAKK 187 Query: 180 AIDNKVQP 187 + ++ Sbjct: 188 ILREYLKE 195 >UniRef50_C1F2L1 RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2L1_ACIC5 Length = 208 Score = 180 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 6/197 (3%) Query: 1 MSEQLTD---QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIK 56 M++ L + ++ + G ++ F+ L+ Y+ V + + + D +V QEAF+K Sbjct: 1 MTDTLAENGEARIIAAILAGQKELFHDLIRPYERHVYVMTFAILKNEADAEEVTQEAFLK 60 Query: 57 AYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGAL--KE 114 A+RAL SFR +S F TWL IA+N A+ L + + P S + E AL Sbjct: 61 AWRALPSFRAESRFGTWLVSIALNEARGRLRRKNQAPTDSIDETHEDGTPHVSPALLRDW 120 Query: 115 ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 174 P ++ E+R ++ I+ LP R LR+L+ LS E AA ++ V + R+ Sbjct: 121 REIPSEMLERAEVRTLLRAAIDHLPLIYREIFLLRDLEELSVNECAAALNISVSAAKVRL 180 Query: 175 FRAREAIDNKVQPLIRR 191 RAR + ++ P ++ Sbjct: 181 HRARLLLQKELAPQLKH 197 >UniRef50_Q1IUC0 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUC0_ACIBL Length = 222 Score = 180 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 2/186 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 + ++ RV G+++ F+ L+ Y+ + + + + DVVQE+ +KAYRAL SFR Sbjct: 18 ESAMIGRVLAGERELFHELIRPYEKSLYFSAFSLLRNAEEAEDVVQESLMKAYRALHSFR 77 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE-AENFESGGALKEISNPENLMLS 124 +S F TWL I +N A+ L + P +S ++ + E+F + Sbjct: 78 SESKFSTWLASIVLNEARGRLRHERVIPFTSIDESPDPDEDFTPAVIADWREVATETLER 137 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E+R+++ R I LP R LR++ LS E A + G V+ R+ RAR + Sbjct: 138 KEIREMIRRAIRELPNIYREVFVLRDVQELSIAESAKALGIAEGLVKVRLLRARLMMQKF 197 Query: 185 VQPLIR 190 + P+++ Sbjct: 198 LAPMLQ 203 >UniRef50_C6XIM9 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIM9_HIRBI Length = 198 Score = 180 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRY-VPSGDVPDVVQEAFIKAYRAL 61 E ++D +LVE+V GD++A ++LV R+ +V ++ R V + DV Q+ F+K +++ Sbjct: 4 ESISDDILVEKVGGGDRQAASVLVRRHSQRVLNIARRMMVNEAEAEDVTQDVFLKVWKSA 63 Query: 62 DSFR-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + G + F TWL+R+ VNT + L P +VD + E P Sbjct: 64 AKWESGKAKFTTWLHRVTVNTCLDRLRK----PKMGNVDTVPE-------VADESETPAQ 112 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +E +++ R +E LP+ R A++L + +S E A +M+ V + S + R R Sbjct: 113 RLEAESRSELLKRAMEQLPDRQRAALSLCYFEEISNIEAAEVMEVSVDALESLLSRGRRK 172 Query: 181 IDNKVQ 186 + +Q Sbjct: 173 LKELLQ 178 >UniRef50_D2QRT0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRT0_9SPHI Length = 246 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 1/162 (0%) Query: 29 YQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 + + + R D D+VQ+ ++KA+R + SF + WL+RI N+ N Sbjct: 74 HIDSMYNFAFRLTTDEDDANDLVQDTYLKAFRFISSFEQGTNAKAWLFRILKNSFINDYR 133 Query: 88 AQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAIT 147 + + P D +E + + +S+ + V + SLP D R I Sbjct: 134 KKSKEPAKVDYQDVETTYNSEDAESEHTVDLRAESVSDLIGDEVATALNSLPVDFRTVII 193 Query: 148 LRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 L +++G +YEE+A I+D P+GTVRSR+ RAR + K++ Sbjct: 194 LCDIEGFTYEEMAKILDIPIGTVRSRLHRARNLLKEKLRDYA 235 >UniRef50_Q3B236 Sigma-24 (FecI-like) n=3 Tax=Chlorobiaceae RepID=Q3B236_PELLD Length = 180 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 19 QKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRI 77 ++ +V +Q V + R+V D D+ Q+ FI+ +R+LD FR DS TW+YRI Sbjct: 5 EEQLRDIVEEHQEMVLNTCYRFVFNREDAEDIAQDVFIEVHRSLDRFREDSKLSTWIYRI 64 Query: 78 AVNTAKNYLVAQGRRPPSSDV-DAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIE 136 AV + ++L R+ S + I AE+ A NPE + +E Q++ +E Sbjct: 65 AVTKSLDHLRRLKRKKRFSSLKRMIGAEDPAINIAAPSRDNPEEALEDKERIQVLQVALE 124 Query: 137 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 SLP+ + A L + DG S +EIA IM+ V V S + RA++ + ++ RR Sbjct: 125 SLPDSQKTAFLLSKQDGYSNQEIADIMETSVSAVESLVHRAKKKLQELLEDYYRR 179 >UniRef50_C7ICT2 RNA polymerase sigma factor n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICT2_9CLOT Length = 204 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 94/183 (51%), Gaps = 4/183 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 ++D +++ +K ++ L+ RY+ V ++ Y + D D+ QE FI ++++D Sbjct: 17 DVSDITILKEYKKNSRRGLELVYDRYKKYVYTIAFHYAGNKEDALDITQEVFIAVFKSMD 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F+ + W+ +I VN + N+L ++ + ++ E + ++ + Sbjct: 77 GFKEQFSMLPWIKKITVNKSLNFLRSKK---QNLSLNETNENGDELQSIISSNETTDDTV 133 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L ++ RQI+ ++I LPE RM + LR + + Y EIA +M P GTV++ I RAR+ I Sbjct: 134 LYKDTRQILQQSIGRLPEKERMVLVLRHVKQMKYSEIATVMKLPPGTVKTLIHRARKTIK 193 Query: 183 NKV 185 + Sbjct: 194 ENM 196 >UniRef50_B0P2V0 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1 RepID=B0P2V0_9CLOT Length = 505 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 7/195 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M+E + L+ KGD ++F+ L K + +Y+ DV+QEA+IKA+ Sbjct: 1 MNEMI---QLLNGTLKGDTRSFDRLYELTHQKAYYVALKYMKDEHQAEDVLQEAYIKAFN 57 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN-- 117 L++ + + F WL++I TA + + R+ S E+ ++ Sbjct: 58 NLNTLQNGNKFEPWLHKIVYTTAMDVYRKRKRQAERSINFTDYEGESETTVEFEDDREEF 117 Query: 118 -PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 PE + +E ++ V ++ L RMA+ L + S +EIA +M+C +GTV+SR+ + Sbjct: 118 KPEEQIDYKETQKAVLGFMDELSSPQRMAMMLFYYEQYSLKEIADVMECSIGTVKSRLNK 177 Query: 177 AREAIDNKVQPLIRR 191 A++ + V ++ Sbjct: 178 AKQLMRGMVDGYEKK 192 >UniRef50_Q8DM09 Group3 RNA polymerase sigma factor n=2 Tax=Cyanobacteria RepID=Q8DM09_THEEB Length = 201 Score = 179 bits (456), Expect = 4e-44, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 10/181 (5%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRG 66 D+ L+E+ G K F L R+Q +V SL+ + + + D+VQE F++A++ L + Sbjct: 26 DRPLIEQCLAGHPKGFRELYQRHQQRVRSLLFQLCGAVALDDLVQEVFLRAWKGLKGLKH 85 Query: 67 DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126 ++ F TWLYRIA N A +Y R + + F + L+++ Sbjct: 86 EAKFSTWLYRIAWNVACDYRRQLATRKSRHQQYLDQQQPFTTAPDLRQLH---------- 135 Query: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 +V R + +LP + R + + +L GL +EIA I++ PVGTV+SR+FRAR ++ Sbjct: 136 YEDLVQRGLATLPLEYRSILVMHDLQGLPQKEIAEILNIPVGTVKSRLFRARGSLRTFFT 195 Query: 187 P 187 Sbjct: 196 E 196 >UniRef50_A6EDP4 Putative RNA polymerase sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EDP4_9SPHI Length = 194 Score = 179 bits (456), Expect = 4e-44, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M++Q +D L+ V G+ + LV R+Q V +L R+ + D +V Q+ F+KAYR Sbjct: 1 MTQQQSDTDLINAVLAGNTDVYTELVKRHQRFVFTLAMRFTKNREDAEEVAQDCFVKAYR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL +F+ +S F TWLY I TA +L + +D ++ ESG L++ S+ + Sbjct: 61 ALGTFQQNSKFSTWLYTITYTTAMTFLRRKK-------MDTTSIDDVESGIQLQDRSSTD 113 Query: 120 NLMLSEELRQ---IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +LS E + + I +LP D + ITL S EEI + V+ ++ R Sbjct: 114 VDLLSVERKSGHTWLNNAIAALPADDAVIITLFYKGEQSLEEIGTALHMSSNAVKVKLHR 173 Query: 177 AREAIDNKVQPLIR 190 AR + K+Q L++ Sbjct: 174 ARIRLKEKLQYLLK 187 >UniRef50_Q2IU66 Sigma-24 (FecI-like) n=29 Tax=Rhizobiales RepID=Q2IU66_RHOP2 Length = 231 Score = 179 bits (455), Expect = 4e-44, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 10/186 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 + D+VL+ R+ +GD+ A +L R+Q +V R V + D++ E F+ +R Sbjct: 47 QATADEVLIARIAQGDRSAMQVLYGRHQVRVFRFGLRLVRNEQIAEDLISEVFLDVWRQA 106 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 F G S+ TWL I A + L + E ++ + +PE Sbjct: 107 GKFEGRSSVSTWLLAITRFKALSALRRRK---------DAELDDEAAAAIEDPSDDPEVA 157 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++ ++ + +E L D R + L S EE+A I+ P TV++R+F AR+ + Sbjct: 158 VQKKDTSDVLRKCLEGLSSDHREIVDLVYYHEKSVEEVAHIVGIPENTVKTRLFYARKKL 217 Query: 182 DNKVQP 187 + +Q Sbjct: 218 ADLLQA 223 >UniRef50_C1SKR1 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR1_9BACT Length = 191 Score = 179 bits (455), Expect = 5e-44, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 108/182 (59%), Gaps = 5/182 (2%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 + D ++E+V GD + F +L+++YQ ++ + + V + D+ QEA++K + L++ Sbjct: 1 MKDSAIIEKVLSGDAQQFEMLILKYQSRLFATILNVVKHRELAEDITQEAYMKGFDKLET 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + FY WL RIA+N A N+ R E + + + +PE L++ Sbjct: 61 LKNREQFYPWLKRIALNLALNHFERAKR----VMDVENEDDETSFFERIPDGESPEELVV 116 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EEL++ V +E+LP+ LR+ + LRE++ +SY+EIA +M+ P+GTVRSR+F AR+ I + Sbjct: 117 KEELKRYVRHFVEALPDKLRVVVVLREMEDMSYDEIADLMNIPIGTVRSRLFNARQIIKD 176 Query: 184 KV 185 ++ Sbjct: 177 RL 178 >UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus coagulans 36D1 RepID=C1P827_BACCO Length = 177 Score = 179 bits (455), Expect = 5e-44, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 12/180 (6%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGD 67 L+ + + GD AF +LV R++ +V + D+ QEAF+KA+ ALD Sbjct: 8 QLIRQAKAGDTDAFAVLVARFKGEVFRHAYAMTGDRMEAEDIAQEAFVKAWYALDKLEHA 67 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 AF +W+ +I + + L ++ + ++ + + P + + + L Sbjct: 68 YAFASWMSKIVSHLCYDRLKKMRKK-----------VDLQAEIEEEPLRRPTSNIDNANL 116 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 R + +E L + R AI LR++ G SYEEIA I++ P+GTV+SRI AR + ++ Sbjct: 117 RFDIRSAMEKLSPEHRAAIVLRDIQGYSYEEIADILNIPLGTVKSRINTARNILKKELSR 176 >UniRef50_Q1IQR2 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQR2_ACIBL Length = 223 Score = 179 bits (455), Expect = 5e-44, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + +DQ ++ERV GD A+ LL+ RY ++ L+ + + DV+QEA+++A+R L Sbjct: 14 EWSDQEIIERVLAGDSPAYELLMRRYNQRLYRLIRSVLRDDAEAEDVMQEAYLRAFRNLS 73 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 + G S F TW+ IAVN A L R D + PE Sbjct: 74 QYEGRSTFSTWIGHIAVNEALARLSKASRLEYKDLNDPAATPD-----IADVAPTPEAQS 128 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 S E ++++ R I +LP R + + +++ ++ + AA+++ TVR R+ RAR + Sbjct: 129 ASGETQRLLERAIMTLPLRYRSVLMMHDVEDMTTADTAAMLELTEATVRVRLHRARALVR 188 Query: 183 NKVQPLI 189 K+ L+ Sbjct: 189 RKLFALV 195 >UniRef50_B1ZRM6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRM6_OPITP Length = 192 Score = 178 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 1/180 (0%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQEAFIKAYRALDSFR 65 D L+E +Q GD A N L+ R++ + V RY+ DVVQE F++ Y F Sbjct: 4 DLPLIEALQAGDDSALNELINRHREPLHRFVFRYLRDETAAGDVVQETFVRVYFKAGKFA 63 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 S+ TW+Y I +N ++Y GRR +DA ++ P Sbjct: 64 PKSSVKTWIYTIGLNLCRDYGRRLGRRRADVSLDAPAHDDGPRFEVADSAPAPSVRAADA 123 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + + I+ LP L+ A+ L L+G S EIA + V +R++ A+ + + Sbjct: 124 DRFSRLQAAIDRLPRKLKEALVLFALEGRSQNEIAEFLRISPKAVETRVYHAKAKLRAAL 183 >UniRef50_C4ZMF7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thauera sp. MZ1T RepID=C4ZMF7_THASP Length = 198 Score = 178 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 9/179 (5%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDSA 69 + R + GD AF LV R+Q +V + R + + ++ Q+ F+KA++AL +R ++A Sbjct: 22 LARARAGDVAAFGALVRRHQERVFRFLHRMLDAREEAMELTQDVFVKAWQALPDWRPEAA 81 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F TWL +IA N A + L + + + +E + PE S + + Sbjct: 82 FSTWLLQIARNAALDQLRRRQLVRFAPLEEGLE--------VADDAPGPEARYASRQRQA 133 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 188 + R ++ L + R + LRE++GL+Y E+A+++ GTV+SR+ RAR A+ P Sbjct: 134 QLERALQRLAAEHREILLLREVEGLAYGELASVLGIAEGTVKSRLARARSALLEHFDPH 192 >UniRef50_C5D220 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Comamonadaceae RepID=C5D220_VARPS Length = 241 Score = 178 bits (453), Expect = 9e-44, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 4/188 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALD 62 Q +D+ L R +GD AF ++ R+ + + + D +Q+A+++A+RA+ Sbjct: 17 QSSDRELAARAAQGDAPAFECIMRRHNQLLFRTARSILKSDEETEDALQDAYLRAWRAIG 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI---EAENFESGGALKEISNPE 119 SFR D+ TWL RI +N A L +G + D A + + E A PE Sbjct: 77 SFRDDAQLSTWLVRIVINEALGRLRRRGAQVIPLDGAAAPGFDEDEPEWAAADDPDKQPE 136 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + EELR+++ R I+ LP+ R LR ++ +S EE AA + P TVR+R FRAR Sbjct: 137 RHAMREELRRLMERRIDRLPDAYRTVFMLRAVEEMSVEETAAALALPEATVRTRFFRARS 196 Query: 180 AIDNKVQP 187 + + Sbjct: 197 LLREGLSR 204 >UniRef50_D2QZ03 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Planctomycetaceae RepID=D2QZ03_9PLAN Length = 224 Score = 178 bits (453), Expect = 9e-44, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 6/191 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 D L+ V+KG+ AF LV+RYQ ++ +++ V + + D+ QE F++ +RA + + Sbjct: 17 DVRLMLDVRKGNAGAFEELVLRYQSRLLTVLEHLVGNRELAEDLAQEVFLRVFRARERYE 76 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRR-----PPSSDVDAIEAENFESGGALKEISNPEN 120 + F TWL+ IA N A N L ++GRR P + A + P Sbjct: 77 PGAKFSTWLFTIANNVASNALRSRGRRKEVGVPQQAGASESGAMQLDQMAKANSGLMPTR 136 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + E ++V + IESL E RMA+ L + + +SY++IA+ M+ V +S + RAR Sbjct: 137 ALDKAEAAEVVRQAIESLSERQRMALLLSKFENMSYQDIASTMELTVQATKSLLSRARVN 196 Query: 181 IDNKVQPLIRR 191 + + + P + + Sbjct: 197 LRDILAPYVEQ 207 >UniRef50_Q11IY6 RNA polymerase sigma factor n=8 Tax=Alphaproteobacteria RepID=Q11IY6_MESSB Length = 244 Score = 178 bits (453), Expect = 9e-44, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 4/191 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E+L+D+ LV ++G + A LL+ R + + V + D+VQE ++ A+ L Sbjct: 18 ERLSDEELVHLARQGGESAIRLLIKRNNRSLFRVARAVVRDDAEAEDIVQETYVSAFTKL 77 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI---SNP 118 DSFRG S F TWL RIA+N A + +++D E N S Sbjct: 78 DSFRGHSRFSTWLTRIALNEALGRARKRWPAAELAELDMAEGCNGGSVIMFPTSLKPPGA 137 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + +++R ++ ++ LP+ R+ LR+++ +S EE A + TV++R+ RAR Sbjct: 138 DAELARKQVRDLLETAVDELPDPFRLVFILRDVEEMSIEETAHQLSLKPETVKTRLHRAR 197 Query: 179 EAIDNKVQPLI 189 + V+ + Sbjct: 198 RLMRLAVEKQL 208 >UniRef50_Q73K99 RNA polymerase sigma-24 factor, putative n=1 Tax=Treponema denticola RepID=Q73K99_TREDE Length = 213 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 11/185 (5%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E + D++L + V G+ +AF+L+ +YQ +V SL + + D D VQ+ +K + AL Sbjct: 14 EAVQDRLLCKAVLAGNTEAFSLIAAKYQKRVYSLGMSFFKNHDDSEDFVQDIMLKTFSAL 73 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FRG+S+F TWL RIA N+A N + + R S D E + + PE Sbjct: 74 PKFRGESSFSTWLMRIAYNSAINSVKRK--REFVSAFDDFEIKTNDL--------TPEER 123 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + ++ + R + LPE R+ I L + Y +I +I PV T++S IFR+++ + Sbjct: 124 QIQNCVKNAIRRAVNDLPEKYRICIDLYFFYDMPYADIESITGIPVNTIKSHIFRSKKIL 183 Query: 182 DNKVQ 186 +++ Sbjct: 184 KTELE 188 >UniRef50_A4CQ62 RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CQ62_9FLAO Length = 194 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 60/188 (31%), Positives = 98/188 (52%), Gaps = 7/188 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M++QL D+ L+ RV G+ +A+ +LV RY V +L R + + + Q+ F+KAY+ Sbjct: 1 MNQQLADRDLIARVLDGEDRAYEVLVDRYSQMVFTLAVRMLRDREVAEETAQDIFVKAYQ 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +L +RG + F TWLY IA + + + R + G L ++ + Sbjct: 61 SLSGYRGSARFSTWLYTIAYHRILDVAAREKRHRSY------RTDELPEGRPLCDLEDTW 114 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + ++ E R ++ +E LPED R+ I+L L S EIAAI GTV+ R+FRARE Sbjct: 115 SQLMEGERRDLILMALEELPEDDRLLISLFYLQEQSLREIAAITGIRAGTVKVRLFRARE 174 Query: 180 AIDNKVQP 187 + + + Sbjct: 175 RLRDLISA 182 >UniRef50_B9XGS8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XGS8_9BACT Length = 182 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFR 65 ++ L ER + GD A + LV + +V + + R D D+ Q+ F + + +L SFR Sbjct: 5 EEQLCERAKAGDMAAASELVTLHYQRVYAFLRRLCGNDQDAEDLTQKTFARVWTSLASFR 64 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G S+F TW++ IA + + + +D + E +E+ + E +P Sbjct: 65 GRSSFSTWVHGIAYHVCIDARRKRNH------LDTMTEEWWETC--VAEGPSPLENTAER 116 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E+ ++ +E+L +R + L GLS +E A ++ TV+ R+ +A E + K Sbjct: 117 EMATQLYSWVETLESGVREVVHLHYYQGLSLQETAEVLGIATSTVKYRLRQALETLKAKT 176 Query: 186 QPL 188 + + Sbjct: 177 EKI 179 >UniRef50_D1CIE7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIE7_THET1 Length = 186 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 E L + LV + GD++AF+ LV YQ V L R + + D QE F++AY L Sbjct: 9 ELLAEMELVRAARDGDKEAFSALVRLYQQDVYRLCYRVLGNHHNAEDASQEVFLRAYDRL 68 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + F +WL RIAVN N + RR P ++++ + +PE Sbjct: 69 KQLESNDKFRSWLMRIAVNICLNE---RRRRHPITEIEE---------WHHPDTQDPETN 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L E Q+V R I+ LP + R+A+ L++L+G+ Y +IA ++ GT R ++R R+ + Sbjct: 117 TLRSERLQLVERAIQELPRNHRIALVLKDLEGVDYAQIADYLEVQEGTARVWVYRGRQKL 176 Query: 182 DNKVQP 187 ++ Sbjct: 177 KEIIER 182 >UniRef50_B0MY18 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY18_9BACT Length = 187 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 10/186 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSF 64 D+VLVE V +GD AF L RY+ + L + + D D++QE FIK Y + + Sbjct: 10 DDRVLVELVLQGDNIAFEYLFERYKEAIHRLFIQRTNNPLDADDLLQETFIKVYINIHRY 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 F W+Y IA NT +++ + + + PE ++ Sbjct: 70 NPAYTFGQWVYTIARNTFVDFIRRRQ---------EDLPIDDKFTAPPSNNPTPEENIIR 120 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ++ R + R ++++P R I +R + SYEEIA ++ P+GTV+++I RARE + Sbjct: 121 KQQRTQIERYLQAMPPRYRQLIVMRFFEEYSYEEIAMKLELPLGTVKTQIHRAREQMCRL 180 Query: 185 VQPLIR 190 + + Sbjct: 181 IAADEK 186 >UniRef50_Q0AXN3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXN3_SYNWW Length = 192 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 2/182 (1%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 ++D++L E+ G+ AF LV RY+ V ++V R D D+ QE F+ + L Sbjct: 2 ISDELLAEQALLGNIAAFEELVNRYKKSVFAIVYRISGQYQDAEDISQEVFLTLFEKLYQ 61 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F F WL+RIAVNT+ + L + S + D + + + ++P ++ Sbjct: 62 FDRQKKFSPWLHRIAVNTSISALRKKKN-IISLNFDESFVSIAFNNRSHFDAADPHLMLE 120 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EELR+ + I LPE R I LR S +EIA I+ V ++ RAR A+ Sbjct: 121 REELREEIGTAIMQLPESYRTVIALRYQMEFSNQEIADILGISKDNVEVKVHRARMALRK 180 Query: 184 KV 185 ++ Sbjct: 181 RI 182 >UniRef50_UPI00016C361F RNA polymerase ECF-type sigma factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C361F Length = 197 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSF 64 TD L+ R GD+ A + L RY+ + R + D D VQ+ F+ A LD F Sbjct: 14 TDDALLARFAAGDRSALDDLFRRYRGVAYRVAYRLLGCEADALDAVQDGFVNALTHLDRF 73 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G S+F TWL R+ N A + + R A+ + + ++ Sbjct: 74 VGRSSFKTWLLRVVCNAAHDIGRQRKRNERM---PQAPAQFSFDELRAADPPPADGGLVR 130 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +LR+I+ + LPE R L L+Y E+A + +GTV SR+F AR+ + Sbjct: 131 ADLRRILDAALARLPEVQRRTFVLHVEGELTYREVADALGISIGTVMSRLFYARQKLKEL 190 Query: 185 VQPLIR 190 + + Sbjct: 191 LAGYQQ 196 >UniRef50_A4ARC6 RNA polymerase sigma-70 factor n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A4ARC6_9FLAO Length = 224 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 ++++++ +++R+ G+++ + +L+ R K+ ++ Y+ ++ DV+Q ++KAY Sbjct: 11 NQRVSESDIIKRILSGEKELYEILLRRNNQKLYRVIRSYIKDEAEIEDVMQNTYLKAYEK 70 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L F+ S + TWL RI +N L +G+ + + N K NPE Sbjct: 71 LHQFKQSSLYSTWLVRIGINEVLARLREKGKVVDINTGISNYKSNTVLEIPDKNQLNPEK 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ +E+++++ TI+S+ R L+E++G+S +EIA +D V+ RI RA+ Sbjct: 131 RIIRKEMQRLIEDTIDSIDAKYRTVYILKEVEGMSVKEIAECLDISSSNVKVRIHRAKAM 190 Query: 181 IDNKVQPLIR 190 + K+ + Sbjct: 191 LKAKLYETAK 200 >UniRef50_C0Z4C2 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C2_BREBN Length = 185 Score = 177 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 98/181 (54%), Gaps = 10/181 (5%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+V++ RV +G++ A++ ++ RY KV+S++ + + D D+VQE FIK Y L + Sbjct: 3 EDRVIIGRVLQGNKDAYSEIIARYHGKVSSILRKMLGHTPDAQDIVQEIFIKTYYHLPEY 62 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + + F WLYRIA N + L + R+ S + IE + PE L+ Sbjct: 63 KANYDFSAWLYRIAANHCLDELRKRKRKLTLSSNEEIE---------PVDSHTPEVAFLN 113 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 +E ++++ + + S+ E R+ + +R + LS EEI+ + P TVR+R+ R ++ + Sbjct: 114 KEGQRLLRQRMMSVEEKYRIVLEMRYFESLSCEEISHRLSIPSSTVRTRLSRGKDKLREA 173 Query: 185 V 185 + Sbjct: 174 I 174 >UniRef50_B4RD59 RNA polymerase sigma factor n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RD59_PHEZH Length = 238 Score = 177 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 3/189 (1%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 L++ LV R + GD AF ++ ++ V + DVVQEA+ KA++ LD Sbjct: 17 ALSEVELVGRARGGDAAAFRAIMQASNQRLFRTARSIVRDESEAEDVVQEAYAKAFQHLD 76 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS--NPEN 120 FRG++ TWL RI VN A+ L + S ++ + E ++ +PE Sbjct: 77 GFRGEARILTWLTRIVVNEARGRLRKRRTMVDLSAIEQAQGEAGRVVMFPGALAAGDPER 136 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 E+R+++ R ++ LPE LR+ LRE++ S E A + TV++R+ RAR Sbjct: 137 EAARAEMRRLLERALDGLPEPLRLVFILREIEDCSVAETAQALGVRAETVKTRLHRARRQ 196 Query: 181 IDNKVQPLI 189 + + + Sbjct: 197 LRRTLDAQL 205 >UniRef50_Q7NFE2 Glr3584 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFE2_GLOVI Length = 187 Score = 177 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 12/181 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 Q++D+ LV R + D +AF L RY KV L+ + + + D+ QE F+K ++AL Sbjct: 9 QVSDEQLVWRASRSDGQAFRELYRRYVSKVRGLLYQMMSDIESLDDLTQEVFVKVFKALP 68 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 FRGD+ F TWL+RIAVN ++ + RRP + +D + E+ + Sbjct: 69 GFRGDAQFSTWLFRIAVNCCQDARRRRARRPMAVPIDNLPLAARG-----------EDPL 117 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 + Q+V + + +L E+ R + L +L +EIA +++ PVGTV+SR+F AR + Sbjct: 118 GRLDREQLVSQALATLKEEHRDVVILHDLHDRPQDEIAKLLNVPVGTVKSRLFYARRQLR 177 Query: 183 N 183 Sbjct: 178 E 178 >UniRef50_D0LYF8 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF8_HALO1 Length = 220 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 4/172 (2%) Query: 22 FNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 F L + + + R S D+VQE ++AYR D+F+ DS WL+RI N Sbjct: 11 FEKLAIPHTDALFGAAFRMTRSQQGAEDLVQETMLRAYRFWDTFQQDSNCKAWLFRILTN 70 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFESGGALK---EISNPENLMLSEELRQIVFRTIES 137 T N R D E + + ++ NPE L+LS+ L V R +ES Sbjct: 71 TFINSYQKNKRSREVLDAAHNEQRATDGILVHERALDLRNPEELLLSQTLSDDVVRALES 130 Query: 138 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 LP D R+A+ L +++G SY+EIA I++CPVGTV SR+ R R + + Sbjct: 131 LPADFRVAVVLCDVEGFSYKEIAEILECPVGTVMSRLHRGRRLLQAALYDFA 182 >UniRef50_A4CGT5 RNA polymerase sigma-70 factor n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CGT5_9FLAO Length = 236 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 5/180 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFR 65 D ++E V GD++ F +L+ R+ + + Y+ D+ D +QEA+IKAYR L F Sbjct: 26 DPWIIEAVLGGDKELFEVLMRRHNELMYRTIRSYLSREEDIEDCMQEAYIKAYRKLRQFN 85 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 +S F TWL RI +N A + + EA + NPE + + Sbjct: 86 NESQFSTWLIRIGINEALMRIRKGKQMLTVEINQDAEAPQIPDKSIM----NPERITMHR 141 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E + I++LP ++ L+E++GL +EI+ +D V+ R+ RAR + + Sbjct: 142 ESLAYIEHAIDALPRKYKIVYMLKEVEGLEIKEISKSLDLSNSNVKVRLHRARNMMKEYL 201 >UniRef50_B8FW34 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Desulfitobacterium hafniense RepID=B8FW34_DESHD Length = 182 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 11/183 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 + D L+++V KG + + LLV RYQ + + + + D V D QEAF+ AY L Sbjct: 1 MEDAELIQQVLKGRHEQYGLLVQRYQEPLIHFLRGILGAEDEVFDCAQEAFLAAYGNLWR 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + F WLY IA N A + + + R P S +++ + PE L Sbjct: 61 YSDKYTFRAWLYAIARNKAIDLMRKRKREIPLSIDESL----------VDRQMGPEEAYL 110 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 ++E V +E LPE R A+ LR LSYEEI+ +++ P+ +V++ + R +E + Sbjct: 111 AKEQALDVRAILEELPEHYRQALYLRYQQELSYEEISTVLNIPISSVKTHLHRGKEKLRQ 170 Query: 184 KVQ 186 ++ Sbjct: 171 IME 173 >UniRef50_C7PI60 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PI60_CHIPD Length = 188 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 14/187 (7%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 + +TD LV R +KGD AF L Y + ++ R + D D +QEAF++ ++ Sbjct: 10 NTSITDH-LVSRCKKGDTLAFRELYNAYSAAMYNICLRMTGNPADAEDTLQEAFMQVFKN 68 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 ++ + W+ RI VN ++L + D +E E Sbjct: 69 IERLENAGSVTAWIKRIVVNHCLSHLRRKKVYFEEVDNIDVEEETIVDESDFAWT----- 123 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + I LP R + L + S++EIA+++D TV+++ RA++ Sbjct: 124 -------VAAIKEAIHVLPHGYRTVLNLYIFEEYSHKEIASMLDISESTVKTQYMRAKDK 176 Query: 181 IDNKVQP 187 + ++ Sbjct: 177 VRQIIKQ 183 >UniRef50_P66808 RNA polymerase sigma-E factor n=73 Tax=Actinobacteria (class) RepID=RPOE_MYCBO Length = 216 Score = 176 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 11/190 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + TD+ L R ++ A LL ++ R + D D++QE +KAY Sbjct: 19 EETDEELTARF---ERDAIPLL-----DQLYGGALRMTRNPADAEDLLQETMVKAYAGFR 70 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEI--SNPEN 120 SFR + WLYRI NT N + R+P + I S + E Sbjct: 71 SFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEV 130 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 L + +++LPE+ RMA+ +++G Y+EIA IMD P+GTV SR+ R R Sbjct: 131 EALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ 190 Query: 181 IDNKVQPLIR 190 + + + R Sbjct: 191 LRGLLADVAR 200 >UniRef50_Q1AVA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVA8_RUBXD Length = 166 Score = 176 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 12/176 (6%) Query: 11 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 + R + GD+KAF+ LV R+Q V + R + D D VQEAF++ + L SF G S+ Sbjct: 1 MARARSGDRKAFSELVRRHQTAVYRVCYRVLGDPEDARDAVQEAFVRCFTKLGSFEGRSS 60 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQ 129 F TW+ R+A+N + N A+ E + S PE+ +L +E + Sbjct: 61 FKTWMLRLAINVSLNERKARA-----------RPLPPELREPPADPSGPEDDLLRKEAAE 109 Query: 130 IVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 V R + L + R A+ LR+L+G+S+ E+A ++ P T RS +R R+ + + V Sbjct: 110 RVHRALRLLQPNHRAAVVLRDLEGMSHAEVAEVLGVPEATARSWAYRGRQRLKDLV 165 >UniRef50_B8I5U3 RNA polymerase sigma factor n=3 Tax=Clostridiales RepID=B8I5U3_CLOCE Length = 189 Score = 176 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 4/183 (2%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 ++D +++ +K ++ L+ RY+ V ++ Y + D D+ QE FI +++++ Sbjct: 2 DVSDIAILKEYKKNRRRGLELVYDRYKKYVYTIAFHYAGNKEDALDITQEVFISVFKSME 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F+ + W+ +I VN N+L ++ P+ ++ I E + ++ + Sbjct: 62 GFKEQFSMLPWIKKITVNKCLNFLRSKK---PNLSLNEINENGDELQSIISSNEKTDDEV 118 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L +E RQI+ ++I SLPE RM + LR + + Y EIA +M P GTV++ I RAR+ I Sbjct: 119 LCKETRQILEQSIGSLPERERMVVLLRHIKQMKYSEIAIVMKLPPGTVKTLIHRARKTIK 178 Query: 183 NKV 185 + Sbjct: 179 ENM 181 >UniRef50_Q5YXA9 Putative sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YXA9_NOCFA Length = 192 Score = 176 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 10/187 (5%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRA 60 S + LVER + GD +A+ LV+RYQ+++ L R + D D VQE F+ A+R Sbjct: 13 STTPDEVTLVERAKDGDVRAYEQLVLRYQNQMFRLALRMLGDRADAEDAVQEVFLGAWRR 72 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L + +AF WLYR+ N N + A+ + ++ + + + P++ Sbjct: 73 LSQLQDSAAFVGWLYRMTTNRCLNVIRARR---------PTADVDPDTAESPRTDTRPDH 123 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + + ++ L + R LRE+DGLSYEEIA I++ VR RI RAR Sbjct: 124 AAQVNSQLAALNQALQRLTPEQRACWLLREVDGLSYEEIATIVETNTTAVRGRIARARAQ 183 Query: 181 IDNKVQP 187 + ++P Sbjct: 184 LAEVMKP 190 >UniRef50_C8WQW1 RNA polymerase sigma factor n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQW1_ALIAD Length = 191 Score = 176 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 9/190 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 59 M+ +L+D +L+ + +G + A L R+ V S R + ++VQ+ F+K +R Sbjct: 1 MNGELSDDMLLAAIARGQRDALEALYDRFARLVYSFAYRVTGNVSHAEEIVQDVFVKVWR 60 Query: 60 ALDSFRGD-SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118 ++ TWL IA +A + + R+ S + P Sbjct: 61 QAHAYNPALGKVSTWLLTIARRSAIDLHRRERRQQHESGEELFPI-------LPDHAPTP 113 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + + +LR + + + LPE+ R + G + EIA +GTV+SR A Sbjct: 114 DRVAEQSDLRSRIRQALAKLPEEQRQVVEWMYFQGYTQNEIAERFGWSLGTVKSRARLAM 173 Query: 179 EAIDNKVQPL 188 + + +++Q + Sbjct: 174 QKLRDELQSV 183 >UniRef50_A1ZJQ1 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZJQ1_9SPHI Length = 187 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 13/192 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS+ +++ LV+ +KG ++A + Y K+ ++ RYV D +V+ F+K + Sbjct: 1 MSKLSSEKALVKGCRKGKRQAQQKVYELYSPKMFAVCLRYVRHQFDAEEVMTNGFLKVFS 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +D F+ + +F W+ RI VN A N+L R D++ I E+++ E Sbjct: 61 KIDQFKEEGSFEGWIRRIVVNEALNHLRKNKRHQAEVDIENISE--------AAELASAE 112 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + +++ + + I+ LPE R L ++G S++EI + T +S++ RAR Sbjct: 113 DNLNAQD----LMKCIDQLPEGYRTVFNLYAIEGYSHKEIGEQLGISTNTSKSQLSRARV 168 Query: 180 AIDNKVQPLIRR 191 + V+ ++ Sbjct: 169 LLQKYVRNQEKK 180 >UniRef50_Q5X4Y5 Sigma factor RpoE (Sigma 24) n=5 Tax=Legionella pneumophila RepID=Q5X4Y5_LEGPA Length = 187 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 8/184 (4%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDS 63 L+D+ L+E QKG+ AF+ L RYQ K+ ++ Y +V D+ QE IK +R L Sbjct: 7 LSDESLIELAQKGNGLAFDKLFERYQGKIRQMIYFYTHDWTNVNDLTQEVLIKVFRHLPY 66 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F S F TWLY+I NT KNY ++++ + ++PE+ ++ Sbjct: 67 FNERSQFSTWLYKITQNTIKNYFR-------TNNLYTDSEMQYMDEQFSTPHNSPESDIM 119 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E + + + L E+LR+ L DG +Y++IA M CP+GTVRSRIFRAR+ + + Sbjct: 120 GLEFEKQIEAAMSCLSEELRLCYGLHIFDGQTYQDIAKEMHCPIGTVRSRIFRARKQLMD 179 Query: 184 KVQP 187 V Sbjct: 180 IVSE 183 >UniRef50_D0LKU5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LKU5_HALO1 Length = 205 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 12/182 (6%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFR 65 T+ ++ ++G+++A L +Y+ +V LV+R V G+ +V Q+AF++ +R + FR Sbjct: 25 TEAAIIAGCRRGEKRAREALYHQYKRRVFGLVTRIVGPGEAEEVAQDAFVRIFRGIPKFR 84 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 GDSA TW+YR+AVN A + + R + D L E++ P + Sbjct: 85 GDSALGTWIYRLAVNAALTHATRRKRHFHAGDE------------VLAEVAAPAQVSRDP 132 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 L + R + LP R + L +++GLS+EE A I+ C VGT +S++ +AR + + Sbjct: 133 NLAARLERALAELPPGYRAIMVLHDIEGLSHEECANILGCRVGTSKSQLHKARARMRTLL 192 Query: 186 QP 187 P Sbjct: 193 GP 194 >UniRef50_Q1D4D9 RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D4D9_MYXXD Length = 269 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 99/190 (52%), Gaps = 6/190 (3%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYR 59 MS TD+ L+E + GD KA + ++ R++ +V R S D +V+QE A+R Sbjct: 1 MS-TRTDEQLMEAARAGDDKALDEVLARHEKQVYRFGLRMCGSEEDAMEVLQETLFSAFR 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 + +FRGD+A TWLY++A RR + D ++ + E + P+ Sbjct: 60 GIHAFRGDAALSTWLYQVARTHCF----RLRRRRVGAPEDFQPLDSPAATNVAAEEATPD 115 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + ++ +++ I +LPE R + LR+++GL+ E+ A+++ V ++SR+ RAR Sbjct: 116 MVSHARQMGEVLQAAILALPEAHREVLILRDVEGLTAEDAASVVGIEVRALKSRLHRARL 175 Query: 180 AIDNKVQPLI 189 + + L+ Sbjct: 176 QMREHLATLL 185 >UniRef50_Q1AXP8 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXP8_RUBXD Length = 202 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 12/184 (6%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 +L D+ LV R GD +++ LV RY+ VASL+ Y V D+VQE F++AY L+ Sbjct: 26 ELEDKELVARTLAGDMRSYEELVRRYERLVASLLYPYARREISVEDLVQETFLRAYDRLE 85 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 +F + F TWL IA N + L + E F E PE Sbjct: 86 TFNPEYRFKTWLLAIANNLGVDTLRRRR-----------EVVEFNHEVHAGETGGPEAAA 134 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 LS E + + + SLPE + + LR + +SY EIA +M V V+SR+FRAR + Sbjct: 135 LSAERAESLREAVLSLPEQYSVPLMLRYGEEMSYAEIAEVMGLSVPAVKSRLFRARNMLA 194 Query: 183 NKVQ 186 ++ Sbjct: 195 GLLE 198 >UniRef50_Q4KKB3 RNA polymerase sigma-70 factor, ECF subfamily, putative n=11 Tax=Pseudomonas RepID=Q4KKB3_PSEF5 Length = 193 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 6/187 (3%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 S+ +D+ L+ R + GD AF +L R++ + V + +V QE ++ R+ Sbjct: 8 SDASSDETLLARYRAGDPAAFEVLYQRHRQGLYRFVLSLCGKAELADEVYQETWLSLIRS 67 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 +G ++F TWLY+IA N ++ G+R P ++ + + G + PE Sbjct: 68 TSQPQGRASFRTWLYQIARNRLIDHWRKHGQRNPL-----HDSYDEQLHGEADQAPGPEQ 122 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + +Q + ++ LPED R LR L EIA++ P+ TV+SR A + Sbjct: 123 QLSLCRDQQRIEAALQDLPEDQREVFLLRAHGDLELPEIASLTQAPLETVKSRFRYALKK 182 Query: 181 IDNKVQP 187 + + Sbjct: 183 LRRLLAE 189 >UniRef50_C6XPB4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XPB4_HIRBI Length = 189 Score = 176 bits (447), Expect = 5e-43, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 3/188 (1%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSR-YVPSGDVPDVVQEAFIKAYRA 60 + + TD L G+++AF L+ RY+ + V R + D DV+QEAF A+R+ Sbjct: 3 NTERTDAELAVAAAGGEERAFTELMRRYKEPLYRYVHRSMRGNEDAYDVLQEAFTAAWRS 62 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 +D + F TW+Y IA+N +++ + R A E+ + N ++ Sbjct: 63 IDRYDPSRKFSTWIYHIALNKIRDHGRKRAVRSFF--FQAAPLESPDRPDIADHSQNVQD 120 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + V + +++LP+ LR TL+ L + E+A I+ + V +R++RAR+ Sbjct: 121 DYEHRDELNRVSKMVDALPDKLRQTFTLQVLQDMPQSEVAEILGVSIKAVETRVYRARKI 180 Query: 181 IDNKVQPL 188 + +V+ L Sbjct: 181 LQEQVEKL 188 >UniRef50_Q47W09 RNA polymerase sigma-70 factor, ECF subfamily n=4 Tax=Alteromonadales RepID=Q47W09_COLP3 Length = 217 Score = 175 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 11/186 (5%) Query: 2 SEQLTDQVL-VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 S D+ L + ++G Q AF L +Y ++ +L R + D DV QE F+ ++ Sbjct: 26 SGDSDDEQLWITEAKQGSQTAFYQLYEKYHRRIYALCWRMLADKDSAEDVCQEVFVVLWQ 85 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 +++FRG+S F TWL+ +A N +L + + P Sbjct: 86 KINNFRGESKFSTWLHSVATNVVLGHLRKHKNWLQRVFSIEEQGVGVQE---------PS 136 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + + ++ + I LPE R+ L ++G +EEI+ ++ VG+ +S+ RAR Sbjct: 137 VSLTDDSTLTLLDQHIARLPERARLVFVLFAVEGYRHEEISTMLKMAVGSSKSQYHRARS 196 Query: 180 AIDNKV 185 + + Sbjct: 197 LLKESL 202 >UniRef50_A8L2E7 RNA polymerase, sigma-24 subunit, ECF subfamily n=9 Tax=Actinomycetales RepID=A8L2E7_FRASN Length = 305 Score = 175 bits (446), Expect = 6e-43, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 22 FNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 + +V + ++V L R + D D+ Q+ F++ +R+L + + F WL+RI N Sbjct: 54 WEDVVREHGNRVYRLAYRLTGNAHDAEDLTQDVFVRVFRSLADYTPGT-FEGWLHRITTN 112 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPE 140 + + Q + + + E ++PE + L V + +LP Sbjct: 113 LFLDRMRRQQKIRFDALPEDTE-------RLAGREASPEAVYAESHLDADVEAALAALPP 165 Query: 141 DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 D R A+ L +++ LSYEEIA + +GTVRSRI R R + + Sbjct: 166 DFRAAVVLCDIEQLSYEEIAQTLGVKLGTVRSRISRGRAMLRAALAD 212 >UniRef50_A7H7K8 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Anaeromyxobacter RepID=A7H7K8_ANADF Length = 230 Score = 175 bits (446), Expect = 6e-43, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 8/182 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP--SGDVPDVVQEAFIKAYRALDSF 64 D+ +V RV GD +F LL+ R+ +V + + S DV D +Q+ ++ AYRAL +F Sbjct: 18 DEAVVHRVLAGDTASFELLMRRHNQRVYRTIRAVLRRDSADVEDAMQQTYLHAYRALAAF 77 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 G S+F TWL RIA+N A ++ Q V+ E PE+ Sbjct: 78 EGASSFGTWLTRIALNVALGFVRRQRVAGVELSVEVDEMTRG------ARDEGPEDGAAR 131 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 E ++ R + L ++ R+ LRE++ LS E A ++ V+ R+ RAR A+ Sbjct: 132 SEAAALLERAVAQLRDEHRIVFVLREVEQLSTAETAEALELSEENVKVRLHRARLALREI 191 Query: 185 VQ 186 + Sbjct: 192 LA 193 >UniRef50_A4U4L1 RNA polymerase sigma factor n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4L1_9PROT Length = 192 Score = 175 bits (445), Expect = 7e-43, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 14/190 (7%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M+ +DQ L++ +GD+ AF L+ R+ +L R + + D +V QEAF++ +R Sbjct: 4 MTAPPSDQDLLQATAQGDRWAFAALMERHTPFALALAMRMLGNADDAEEVAQEAFLRVWR 63 Query: 60 ALDSFRGD--SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 + GD + F TWLYR+ +N + + RR P +D I+ + Sbjct: 64 KAPDWDGDGGARFTTWLYRVVINLCTD----RKRRKPIVAMDDIDEP-------PDPGPD 112 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 + +++++V + + LPE R AI L L + + A + V + S + R Sbjct: 113 GLERLAQGQMQKLVSQALNHLPERQRAAIALCHLGETTNAQAAETLGISVSALESLLVRG 172 Query: 178 REAIDNKVQP 187 R + + + Sbjct: 173 RRGLRDYLSR 182 >UniRef50_UPI000197305F RNA polymerase ECF-type sigma factor n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197305F Length = 200 Score = 175 bits (445), Expect = 7e-43, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 6/182 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 + + LVER GD++AF+ L Y+ + + D D+VQ+ F+K Y + Sbjct: 1 MRETELVERFAAGDREAFDALYELYKDQAFRTAWFLAGNRADAEDIVQDTFVKVYVNIGQ 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + F +W YRI TA + ++GRR D + + + S +L Sbjct: 61 LKDAGGFKSWFYRILTRTA--WKQSEGRRREFPDSEILTHADASSDIQTDLTP---ERLL 115 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 EE RQ + ++ L E R + L + S IA IM C GTV+SR+F AR I Sbjct: 116 KEEERQRIRDAVDRLDEKHRTVLILYYFNEFSTRTIARIMGCLEGTVKSRLFTARRKIRA 175 Query: 184 KV 185 ++ Sbjct: 176 EL 177 >UniRef50_C8XA65 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Actinomycetales RepID=C8XA65_NAKMY Length = 208 Score = 175 bits (445), Expect = 7e-43, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 98/186 (52%), Gaps = 2/186 (1%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRAL 61 + D VLV R Q GD +AF LV RYQ + + R + D DV Q AFI A+R L Sbjct: 22 PDVDDAVLVLRAQDGDPRAFEQLVRRYQQVMFGVAVRILGDRDEAEDVTQNAFIAAWRRL 81 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 FR D+ F TW+YRI N A N Q RRP +D + +EA + + ++PE Sbjct: 82 PEFRADAKFSTWMYRIVTNQALNQARGQSRRPRPADRETLEAASGSWVSTTVD-ADPERH 140 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 L V R + +LP+ LR+ LRE+ SY+E+A I + + T R RIFRAR+ + Sbjct: 141 AQRAALLAAVRRALAALPDQLRVCWLLREVHERSYQEVADITEVSLDTARGRIFRARQRL 200 Query: 182 DNKVQP 187 ++ Sbjct: 201 AEEMSA 206 >UniRef50_A5CQL0 RNA polymerase sigma factor n=4 Tax=Actinomycetales RepID=A5CQL0_CLAM3 Length = 274 Score = 175 bits (445), Expect = 8e-43, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 4/183 (2%) Query: 12 ERVQKGD-QKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSA 69 + Q GD ++ F + + ++ + R + D D+VQE F+KAY A F+ + Sbjct: 78 RKAQPGDNRELFEEQALPFIDQLYAAGLRMTRNPADAQDLVQETFVKAYTAFHQFKQGTN 137 Query: 70 FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENF--ESGGALKEISNPENLMLSEEL 127 WLYRI NT N + R P + +D +E + + E + Sbjct: 138 LKAWLYRILTNTFINNYRKKQRDPYNGTIDELEDWQLGGATSATATTTRSAEAEAIDHLP 197 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 V ++S+PED RMA+ +++G SY+EIA IM PVGTV SR+ R R + + + Sbjct: 198 DSTVKDALQSIPEDFRMAVYFADVEGFSYQEIADIMKTPVGTVMSRLHRGRRMLRSLLSD 257 Query: 188 LIR 190 R Sbjct: 258 YAR 260 >UniRef50_Q21P18 Sigma-70 region 2 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21P18_SACD2 Length = 188 Score = 175 bits (445), Expect = 8e-43, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 10/189 (5%) Query: 1 MSEQ--LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKA 57 M+E D+ L+ + GD +A + R++ +V V D++ + ++ Sbjct: 1 MAEDEVPDDKQLLAAIASGDTEAITVFYQRHEARVYRYALAKVGDSFAAADILNDVMMQV 60 Query: 58 YRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISN 117 +RA F G + TWL IA N ++ G R + D++E E+ +N Sbjct: 61 WRAAAKFEGRAKVTTWLLGIAHNKVVDHWRKVGAREYTELDDSMEDES-------ASGAN 113 Query: 118 PENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRA 177 P + +++ + L + R + L + L Y EIA+I+D P GTV+SR+F A Sbjct: 114 PAQATEAASDGKLLHACLAKLKPEHREILHLVFFEELGYSEIASIIDVPEGTVKSRVFHA 173 Query: 178 REAIDNKVQ 186 R + ++ Sbjct: 174 RNLMKKQLA 182 >UniRef50_Q7UFL5 RNA polymerase sigma factor n=1 Tax=Rhodopirellula baltica RepID=Q7UFL5_RHOBA Length = 211 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 6/184 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 + L+E GD AF LV+R+Q ++ + S D +V QEAFI+A+ LD+F Sbjct: 20 DEGALIEAALSGDASAFEGLVIRHQDRLHHAMIHVTGSVHDAEEVTQEAFIRAFVKLDTF 79 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 + +S F+TWLYR+A N A + Q R E GG + M+ Sbjct: 80 QQNSQFFTWLYRVAFNIALSRKRRQKVRLSLDQQREEIGEEVVCGG-----EAVDANMIR 134 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ++ +V + L ++ R + LRE++ SYEE+A I++ +GTVRSR+ RAR+ + Sbjct: 135 QDDVSLVQLALRQLSDEHRSILVLREMNESSYEEMAEILELSIGTVRSRLNRARKQLRLA 194 Query: 185 VQPL 188 ++ L Sbjct: 195 IEQL 198 >UniRef50_B3DVU8 RNA polymerase sigma factor n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DVU8_METI4 Length = 197 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 4/187 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRA 60 + + TD +L+E KGD +A++LLV R+ + + + ++ Q+ F++AYRA Sbjct: 5 NMEYTDSMLMELTAKGDDEAYSLLVQRHYQAIFGAAVKMLKDRYLAEEITQKVFLQAYRA 64 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 + + TWLY I N + S E + ++P + Sbjct: 65 AGRYEPRAKLRTWLYTILRRLVFNQFRKK---EIQSSPLVTEKGEDRDITTYQSTTSPLD 121 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 ++ +E + + ++I+ LP RMA+ L+ + LSYEEIA I+ V +S +FRARE Sbjct: 122 HLMKQEQMEWIEKSIDGLPPRQRMAVILKSYEDLSYEEIARILGVSVPATKSLLFRARET 181 Query: 181 IDNKVQP 187 + + Sbjct: 182 LREAFRK 188 >UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXK5_9CLOT Length = 204 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 7/185 (3%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDS 63 L D+ LVE+V GD +AF L +Y+ + D+VQE F++ Y + S Sbjct: 15 LEDRELVEKVANGDFEAFEELFNKYKGTAMRTAYLICGNKATSEDIVQETFVQCYLNIGS 74 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 + F TW Y+I + + +D I A+ + L Sbjct: 75 LKNPDYFKTWFYKILT---RMAWKLSKSDKKNVPIDEIFAKAEREQNHESDNMT---KCL 128 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 E +IV + +L E R + L +G S +EIA ++D GTV+SR+F+AR + Sbjct: 129 ESETVEIVRSAVNNLDEKYRAVVVLYYFNGFSVKEIANMLDVFEGTVKSRLFKARRLLKG 188 Query: 184 KVQPL 188 K++ L Sbjct: 189 KIESL 193 >UniRef50_A5UPH8 RNA polymerase, sigma-24 subunit, ECF subfamily n=7 Tax=Chloroflexi (class) RepID=A5UPH8_ROSS1 Length = 212 Score = 175 bits (444), Expect = 9e-43, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 5/188 (2%) Query: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRA 60 ++ D VL+ + +GD A L RY V + R + + + +VVQE F + +R Sbjct: 19 TDTPDDHVLIAAIAQGDSSALETLYDRYSSVVYRMALRMLKNRELAEEVVQEVFWRVWRR 78 Query: 61 LDSFR-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 SF WL+ IA N + L RP D ++ + + Sbjct: 79 SASFDIERGRVAQWLFGIAHNLCIDELRRMRARPTQVYED---VDHPVIQQLADDQIDVP 135 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + E R+++ ++ LP+ R A+ L GLS++EIA ++ P+GT+++R+ + Sbjct: 136 EAAWAFEQRRVIRDALDHLPDTQREAVELAYFGGLSHQEIATKLNRPLGTIKTRVRLGLQ 195 Query: 180 AIDNKVQP 187 + + Sbjct: 196 KLGALLTA 203 >UniRef50_A6C0F8 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0F8_9PLAN Length = 211 Score = 175 bits (444), Expect = 9e-43, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 8/180 (4%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSF 64 +D LVE +KGD AF LV+RY+ ++ ++ ++V S D D+ Q+ F+K+Y LD F Sbjct: 23 SDARLVEAARKGDDSAFGELVLRYERRLIRVLIQFVKSPDLAEDLAQDTFLKSYERLDQF 82 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 F WL+RI VN A +YL Q RR ++ + Sbjct: 83 DTSRRFGPWLFRIGVNQALDYLRKQKRRGWWLLFSDSPSDTPFDPSVPDPRN-------K 135 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ++ Q V +E +PE R + LR+L+ S EIAAI+D T+R R+ AR Sbjct: 136 LDINQEVQAILEEIPEKYRTVLVLRDLENFSTSEIAAILDRKEATIRWRLAEARNRFQKL 195 >UniRef50_D2R3P6 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Planctomycetaceae RepID=D2R3P6_9PLAN Length = 214 Score = 175 bits (444), Expect = 9e-43, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 82/186 (44%), Gaps = 6/186 (3%) Query: 5 LTDQVLVERVQK-GDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALD 62 LTD+ L+ R + + F+ LV RYQ ++ S + RY+ + D Q AF++ + Sbjct: 20 LTDEQLLTRYRDTRHRDYFSELVGRYQRELYSYLRRYLQDAELAEDAFQAAFLQVHLKCG 79 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALK----EISNP 118 F D +F WLY IA N A + R S + G + NP Sbjct: 80 QFEADRSFRPWLYTIATNQAIDAQRRSKRHRMVSLDRTSSTGGDDLGTLMDLLVSSEPNP 139 Query: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178 + SEE R + +E LPE LR I L L Y E A ++ PVGTV+SR+ A Sbjct: 140 TAQLNSEERRTWISDAVEQLPEGLRQVIDLVYFQELKYREAADVLGIPVGTVKSRVHAAV 199 Query: 179 EAIDNK 184 + Sbjct: 200 LKLTEM 205 >UniRef50_C1ABI4 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABI4_GEMAT Length = 204 Score = 175 bits (444), Expect = 9e-43, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 12/186 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 +TD L++R++ GD A R+ +V L+ R + + Q+ F++A+ ++ Sbjct: 1 MTDTELIDRLKAGDHGAERDFYERHVDRVYRLILRMSGRPELAQEWTQDTFLRAFSRIEQ 60 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 FRGDSA +WL+ IAV+ N L RR A E + S+P+ Sbjct: 61 FRGDSALSSWLHVIAVSITLNGLRTHKRREAF----AAPLEEATTVARWSGESDPD---- 112 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 L+ + I +LP+ R + +++G ++EEI + VGT +S++FRARE + Sbjct: 113 ---LKVRLRAAIAALPDGTRRVFVMHDVEGFTHEEIGEALGVAVGTSKSQLFRAREKLRV 169 Query: 184 KVQPLI 189 + Sbjct: 170 ALAAFA 175 >UniRef50_C1ZMC3 RNA polymerase sigma factor n=3 Tax=Planctomycetaceae RepID=C1ZMC3_PLALI Length = 208 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 5/188 (2%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFR 65 D L+ R ++GD AF+ LV YQ ++ ++ V D+ QE F++ YRA +S+ Sbjct: 20 DVQLMLRAKQGDDAAFSQLVAAYQDRLVGILHHLVQDQQTAEDLAQEVFLRIYRARESYV 79 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE----NFESGGALKEISNPENL 121 + F TWL+++A N A N +GRR S E K P Sbjct: 80 ATARFSTWLFKVANNLASNSRRNKGRRKEISLAGNESGSMGSRPEEQLVVEKSALMPARQ 139 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + EL+ V +E L RMA+ L + +G+SY +IA MD V+S + RARE + Sbjct: 140 LDKAELQAAVRAAMEQLNSRQRMAVLLHKFEGMSYADIAETMDLTQPAVKSLLARARENL 199 Query: 182 DNKVQPLI 189 ++ + Sbjct: 200 REFLERYV 207 >UniRef50_A0LD14 RNA polymerase sigma factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD14_MAGSM Length = 210 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 7/182 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D +++ G +A+ L+V R Q +V V R++ S D D+ QE F++AYR L F+ Sbjct: 15 DAAHLKQALNGHPEAYALVVRRLQVRVYHFVLRHIHSPEDAEDLTQETFLEAYRNLSRFQ 74 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S F TWL IA N A+N+ R P D + E + P + Sbjct: 75 GNSLFSTWLLGIAHNMARNF----RGRAPHYRYDITDDSVLEYTS--DDRPTPHDYADEA 128 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + +++ R +E LPE+ R A+TL L+ LSYEE A + D + +++R+FRAR+ + + Sbjct: 129 DRMKLLKRAMEQLPEEQREALTLISLEELSYEEAAVVADISLSALKTRVFRARKHLRELL 188 Query: 186 QP 187 Sbjct: 189 HK 190 >UniRef50_B4V9J8 RNA polymerase sigma factor SigM n=8 Tax=Streptomyces RepID=B4V9J8_9ACTO Length = 237 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 6/184 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 +DQ L+ GD AF LV R++ ++ ++ R + + D VQ+A + AYRA +F Sbjct: 10 SDQELLALHAAGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTF 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124 RG+SA TWL+RI VN + R S D E L+ + E Sbjct: 70 RGESAVTTWLHRITVNACLDRARKAASRKTSPLDDTERLERL-----LEPHESAEAPAER 124 Query: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184 ++L + + + +LP + R + L ++ G E A I+D P GTV+SR R R + Sbjct: 125 QDLHRQLLAALATLPAEQRAVLVLVDMQGYPVAEAARILDVPTGTVKSRCARGRAKLLPM 184 Query: 185 VQPL 188 + L Sbjct: 185 LTHL 188 >UniRef50_A4FAV7 Putative RNA polymerase sigma factor n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FAV7_SACEN Length = 187 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 7/170 (4%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 TDQ L+ Q+GD AF+ LV R+ + + R + + + D VQ+A++ A+R+L Sbjct: 5 ADTDQALIAAAQRGDASAFDELVRRHTTTMYRVAVRILGNSSEAEDAVQDAWVSAWRSLK 64 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 FRGD+A TWLYR+ N A + + ++ + GG + +PE Sbjct: 65 RFRGDAAPSTWLYRVVTNAALAQIRRRR------PTVPLDVSDEAVGGLFADHRDPEGQA 118 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 + E +V R I +L R+ + L E +G+ YEEIA ++D +RS Sbjct: 119 VRNEEATMVHRAIATLEPSQRVPLVLHEFEGMGYEEIAEVLDVGAPALRS 168 >UniRef50_Q5NZC6 ECF-family RNA polymerase sigma factor n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NZC6_AZOSE Length = 231 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 6/182 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D LV V G+ A ++ ++ + D D VQEA++ AYRAL F+ Sbjct: 16 DSELVAHVLHGEPGALERMMRANNRRLFRTARGILRDDADAEDAVQEAYVSAYRALADFK 75 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G+S+ TWL RI VN + L ++ R ++ A E PE + + Sbjct: 76 GESSLSTWLTRIVVNKSLERLRSRSRSGGLAEDSAAYDE-----RQTAPAETPEAMAMRR 130 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 ELR+++ +I+ LP+ R LR ++ LS E AA + G V++ +FRAR + + + Sbjct: 131 ELRRVIESSIDRLPDGCRAVFMLRAVEELSVTETAASLGMSEGAVKTALFRARHLLRDTI 190 Query: 186 QP 187 Sbjct: 191 GR 192 >UniRef50_C1AC29 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC29_GEMAT Length = 192 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 13/190 (6%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M+ TD +V R +GD++A LL ++ V ++V R D D+ QE +I+ +R Sbjct: 1 MNAMETDAAIVRRAIEGDERAMRLLWNQHAPHVDAVVRRLAGDPDLAQDIAQEVWIQIFR 60 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 AL S+RGD+ F TW++R+A+N N + R ++ + E Sbjct: 61 ALPSWRGDAKFSTWIHRVAINRTLNAMRRVKRLSTV------------ETAIEEDSAVVE 108 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 L Q + + L R L +++G ++EEIA + G +S++F+AR Sbjct: 109 QDAERSMLAQTIAEATQRLSPGARTVFLLHDVEGYTHEEIATELGITAGGSKSQLFKARA 168 Query: 180 AIDNKVQPLI 189 + + PL+ Sbjct: 169 KLRRLLAPLV 178 >UniRef50_Q01NU7 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NU7_SOLUE Length = 188 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 9/189 (4%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALD 62 + D L+ + KG +++NLLV R++ ++ + + R + D D+ Q+ F+KAY+ L Sbjct: 5 AVEDTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAYQNLR 64 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 + F WLYRIA N A + + P +DVD +E E E G + S + Sbjct: 65 KLDDSARFAPWLYRIAHNEAYSMFRKRR---PETDVDELEPEATEIGITVGGSS-----V 116 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 EL V ++ L D R A+ L+ G +EE+A I+ CPV TV+SR++ A E + Sbjct: 117 FPVELSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCPVSTVKSRLYTALELLK 176 Query: 183 NKVQPLIRR 191 ++ P+ R Sbjct: 177 AELAPVKAR 185 >UniRef50_A8L8U8 RNA polymerase, sigma-24 subunit, ECF subfamily n=7 Tax=Actinomycetales RepID=A8L8U8_FRASN Length = 303 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D + R GD AF L + ++ S+ + + D VQEA + A+R FR Sbjct: 28 DLEALRRHVAGDPDAFGELFRAHADRLWSVAFALLQDAEEAADAVQEAMLSAHRRAADFR 87 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G++A TWL+RI N A + L + RP A + +E ++ + + Sbjct: 88 GEAAVGTWLHRIVTNAALDRLRRRAVRPTVPMPSAPDGAPYEP-------ADARDAIAEH 140 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + R + + LP LR + L +++G S E+A ++D PVGTV+SR R R + + Sbjct: 141 DTRMDIGAALGMLPVTLRTPVVLVDVEGRSVAEVAELLDIPVGTVKSRCARGRARLAVLL 200 Query: 186 QPLI 189 L Sbjct: 201 GHLA 204 >UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira RepID=Q04U83_LEPBJ Length = 207 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 8/177 (4%) Query: 10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDS 68 L++++++GD +A+ LV ++ ++ V D D+VQ+A I YR++ +FR DS Sbjct: 27 LLKKIKEGDDEAYIQLVNPFRERLYRKAVSMVKDGDDAEDIVQDALISGYRSIRNFRADS 86 Query: 69 AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128 YTWLYRI VN +K+ L + R +S D + G E + + Sbjct: 87 GVYTWLYRIVVNKSKDMLAKRKRAKENSMDDKEYQVTDDRVGF-------EKKIELSDES 139 Query: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 + I L + + I LR + +SY +IA ++ VGTV+SR+F+A+E + + + Sbjct: 140 NYLISKINGLEDLYKEVIELRYFEEMSYAQIAEVLGTNVGTVKSRLFKAKEFLKHLI 196 >UniRef50_C6PS15 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PS15_9CLOT Length = 221 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 96/181 (53%), Gaps = 3/181 (1%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFR 65 D+ L+ R +K D+ A L Y+ + L Y + D D+VQE +IK + ++ F Sbjct: 38 DKKLILRCKKYDKPALMELFKIYEKYLYRLCYSYCQNQQDALDLVQEIYIKIFNNINKFN 97 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 D F+ W+ +++VN N+ + + ++ E+ + N E+ + Sbjct: 98 DDMPFHPWVRKLSVNICLNF--KRTIKSNVVSLNGELNEDSTLEDTVASDFNVEHEIEKM 155 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 +L++I+ +++LPE+ R+ I LR + LSY EI+ ++ P+GT+++ ++RA+ + K+ Sbjct: 156 DLKRILKENLKALPENYRLVIILRYYENLSYNEISELLCKPLGTIKTDLYRAKALLKKKL 215 Query: 186 Q 186 + Sbjct: 216 E 216 >UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT Length = 924 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 2/192 (1%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59 M EQ + + LVER + GDQ+A L + K L + V D D++Q+AF+K + Sbjct: 1 MMEQ-SIRELVERAKMGDQQAIAALYEKTSRKAYYLSLQLVKDQDQAQDILQDAFLKVFT 59 Query: 60 ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119 L+ + F WL I +N +K+YL + S + E ++ + +PE Sbjct: 60 NLNMLQQPENFQGWLDTIVINKSKDYLKKKKPVLFSQMTGSEEPDSEPDFEDERGYFSPE 119 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + +E +++V I+ LPE+ RMA+ L L+ LS +IA +M+C GT++SR+ R+ Sbjct: 120 KQVDYQETKRLVQEMIDRLPEEQRMAVVLYYLENLSVGQIARLMECSEGTIKSRLNYGRK 179 Query: 180 AIDNKVQPLIRR 191 +I +V L ++ Sbjct: 180 SIKAQVLALEKK 191 >UniRef50_Q488H2 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q488H2_COLP3 Length = 228 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 16/200 (8%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRY-VPSGDVPDVVQEAFIKAYRALD 62 Q + L+E + D A+ LV +Y K+ ++ R+ + D + +Q+AFI+ ++ + Sbjct: 11 QEKESELIEGLMSNDDLAYETLVRQYSAKMYAVARRFFCTNDDAQECLQKAFIQVFKNIT 70 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEIS------ 116 SF+ +S TWL+RI VN A L + R+ +S + + N + + Sbjct: 71 SFKQNSNLSTWLHRITVNEALMMLRQRKRQNTTSLEEFAQHYNEYGERTVFADNLGNNLN 130 Query: 117 ---------NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPV 167 N E L E + + I LPE + LR++ +S +E A I+ Sbjct: 131 NNLGTILGGNVETLFEKTETKLSLNDIIFQLPEKYCNVLLLRDIQEISTKETAEILAISE 190 Query: 168 GTVRSRIFRAREAIDNKVQP 187 V++++ RAR + ++ Sbjct: 191 SLVKTQLHRARLLLKAILEQ 210 >UniRef50_Q6MPU7 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPU7_BDEBA Length = 206 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 12/187 (6%) Query: 5 LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDS 63 +TD LVE+V+ GD+++F+ LV R+Q V + R+V D DV QEAFIKAY L++ Sbjct: 7 VTDLELVEKVKSGDRRSFSELVKRHQRSVLRMSLRFVKDMDTAEDVTQEAFIKAYEKLNT 66 Query: 64 FRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLML 123 F G S+F +WL++IAVNTA+N L R L + E ++ Sbjct: 67 FEGRSSFKSWLFQIAVNTARNKLREWKR-----------DTVDIDDVQLAVDAEAETTLV 115 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + I+ +E LP + A+ LR + LS+ EIA IM+CP T ++ A + Sbjct: 116 HTAVSDILKNEVEKLPFKQKTALVLRVYEDLSFNEIADIMECPYDTAKANYRHALMKLRQ 175 Query: 184 KVQPLIR 190 + Sbjct: 176 TFEQQAE 182 >UniRef50_Q21I12 Sigma-70 region 2 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21I12_SACD2 Length = 179 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 16/186 (8%) Query: 4 QLTDQVLVERVQK-GDQKAFNLLVVRYQHKVASLVSRYVPSGD--VPDVVQEAFIKAYRA 60 ++DQ L+ RVQ GDQ AF+ LV ++Q +V S R + D+ QEAFIKAY A Sbjct: 2 TISDQTLIARVQANGDQHAFSQLVRKHQSQVRSWARRLCNGDEHLADDLAQEAFIKAYMA 61 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN 120 L +FRGD+ F WLYRI N A + + ++ + +I+ Sbjct: 62 LAAFRGDAKFSVWLYRIVFNVAASKWRKKK-------------LDWCNIDEQPDIAAEAC 108 Query: 121 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180 + + + R ++ L E R+A+ L +G S++E A +M P+GT+++ + RA+ Sbjct: 109 ELHQFAASEDITRAMQVLTEPQRIAVQLCFEEGFSHDEAAQVMGVPLGTLKTHVNRAKAK 168 Query: 181 IDNKVQ 186 + + Sbjct: 169 LKVSLA 174 >UniRef50_Q0VMH1 Rna polymerase sigma-e factor (Sigma-24) n=2 Tax=Alcanivorax RepID=Q0VMH1_ALCBS Length = 202 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 8/198 (4%) Query: 1 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA 60 M L +ER+++GD+ AF +V + + + + + + D + VQ+A+I AYRA Sbjct: 1 MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRA 60 Query: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA--------IEAENFESGGAL 112 + F G S TWL RI +N A+ L GR + +D + +++ Sbjct: 61 IAKFEGRSLLRTWLTRIVINQARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQH 120 Query: 113 KEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRS 172 +++ P+ L+ +ELR + +T+ +P++ R+ + LR+L G+ +++I ++D VR Sbjct: 121 WDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQGMDFDDICNMLDVSASNVRV 180 Query: 173 RIFRAREAIDNKVQPLIR 190 + RAR + V Sbjct: 181 LLHRARARLFELVDHFQE 198 >UniRef50_A7BEQ0 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BEQ0_9ACTO Length = 195 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 2/184 (1%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSF 64 D+ LV R Q GD AF LV RYQ ++ V + D D+VQE I+A+R++ Sbjct: 10 DDRCLVLRAQDGDIGAFEKLVNRYQGRLFRSAYMIVRNRQDSEDIVQETLIQAWRSIHLV 69 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPS-SDVDAIEAENFESGGALKEISNPENLML 123 R +AF WL RI N A + + Q RR D ++++ + + + ++P + Sbjct: 70 REPAAFRGWLVRICTNKATSLMRKQQRRATDPYDAESLDTVSNTAQASANNTADPADSSE 129 Query: 124 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183 + + + S+P +LR+ LRE+D ++YEEI ++ V TVR R+ RAR + Sbjct: 130 VNAQIKALADILASVPANLRIVWVLREIDEMTYEEIGQTLNLTVPTVRGRLARARSLVMR 189 Query: 184 KVQP 187 K++ Sbjct: 190 KMKE 193 >UniRef50_Q67R01 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67R01_SYMTH Length = 186 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 3/170 (1%) Query: 19 QKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRI 77 A + L+ Y KV L Y+ DV QE FIKAYR ++FRG+S+ YTWLYRI Sbjct: 14 TAAIDHLMREYGTKVLHLAYSYLKDRHLAEDVAQEVFIKAYRNWENFRGESSAYTWLYRI 73 Query: 78 AVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIES 137 VN ++ + R D A + +PE ++ + R+ + + Sbjct: 74 TVNLCRDKARSAWWRRLLPTDDPRAAGTPVEPDTAGD--DPEEAVVLSDQRERLLDYVMQ 131 Query: 138 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 L + R I L L+ EIA + TV++R+FRAR + +Q Sbjct: 132 LSDAYREVIILYYYHDLTTVEIAEVTGQNENTVKTRLFRARAMLKQMLQK 181 >UniRef50_A9G8Q1 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G8Q1_SORC5 Length = 324 Score = 173 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGD 67 + R Q GD AF + RY+ VA LV R + + DV DV+QE FI+ +R+L FRG Sbjct: 99 EWIRRFQSGDPTAFAEIFRRYRRDVARLVFRMLGPTADVEDVIQEVFIQVHRSLGDFRGQ 158 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 S F TWL+R+ VN A RP ++ E + P+ Sbjct: 159 SKFTTWLHRVTVNAVLMARRAARCRPVFVGELGVDIE-------VDRGMLPDEDAARARR 211 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 R +E LPE R+ L EL+G+ EIA I+ PV TVR+R+F AR I+ ++ Sbjct: 212 IDAFRRVLERLPEKKRVVYVLHELEGIPPNEIAEIVGAPVLTVRTRLFYARREIEAMMRA 271 >UniRef50_B5JFS0 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFS0_9BACT Length = 223 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 6/192 (3%) Query: 6 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDV-PDVVQEAFIKAYRALDSF 64 D L+ + + D + ++ +++ + S RY + ++VQE F++ + + + Sbjct: 7 NDHELMRGLIREDPGSLESIIEKWERPLYSFAYRYTQNEFATREIVQETFVRVFTKRERY 66 Query: 65 RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAI-----EAENFESGGALKEISNPE 119 D +W++ IA N KN R P S ++ E E E P Sbjct: 67 NFDYPLSSWIFTIAANLCKNKARWHKRHPEVSLEASLGNGGEEGERSMMDVISSEGELPA 126 Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 + E ++ + + LP DLR A+ L + LSY+EIA ++ C V V +R++RAR+ Sbjct: 127 ESIEKLEELDMLKQAVMGLPHDLRTAVLLHHYEDLSYKEIAEVVGCSVRGVETRLYRARK 186 Query: 180 AIDNKVQPLIRR 191 + ++ + R Sbjct: 187 LLRVRISQIAER 198 >UniRef50_UPI000050F8D0 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8D0 Length = 187 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 7/179 (3%) Query: 9 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGD 67 LV R ++GD AF LV R++ K+ R + D DVVQ+ ++A+++L++ Sbjct: 12 TLVVRAREGDIDAFESLVDRHETKLLRFCLRTLGDRQDAEDVVQDTLVQAWKSLNALSEP 71 Query: 68 SAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEEL 127 +AF TW+YR+A N + L + RP + + + ++ E + + Sbjct: 72 AAFGTWIYRLASNKCTDMLRRRMARP------SDAQDPDDMSIHPDGRASVEKSVEARTA 125 Query: 128 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 Q +++L + R+A L +++GLSY E+AA + G+VR RI RAR A+ ++ Sbjct: 126 LQHFSSVLQTLSSEQRVAWVLHQMEGLSYAEVAATLGISEGSVRGRIHRARTAVMEGME 184 >UniRef50_A8W1I0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W1I0_9BACI Length = 184 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 6/182 (3%) Query: 7 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFR 65 D+ LV+ KGD++AF L R+ V V V + D +++Q+ F+K R L F Sbjct: 2 DEELVKDALKGDERAFETLHARHADDVFRYVYMKVGNRQDAEELLQDVFVKMVRNLAGFS 61 Query: 66 GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSE 125 G S F TWL+ I +T +Y +GR EN ++ E + + Sbjct: 62 GKSTFRTWLFSIVRHTVIDYYRKKGR-----LQKEQPVENDLLEAVSDTTASAEEVASNR 116 Query: 126 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185 E R V SLPE R + LR ++G S +E A I V V+S RA+ + +V Sbjct: 117 EKRSHVSDAFNSLPEGHREILYLRFMEGFSLKETARITGKSVMAVKSLQKRAQAKMGEQV 176 Query: 186 QP 187 Sbjct: 177 DE 178 >UniRef50_C0A3E7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3E7_9BACT Length = 246 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 8/191 (4%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRAL 61 E + D LV R GD+ AF +V R+Q ++ S+ + + D ++ Q+ FI A+R L Sbjct: 29 EAVYDAALVVRFGGGDEAAFIEIVGRHQVRLFSVAFSMLRNRGDAEEIAQDVFIHAHRCL 88 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKE-----IS 116 +FRG+S+ TWL+ +A+N A+N RR + + E L + Sbjct: 89 GTFRGESSLATWLHHVALNLARNRYWYFHRRYRHATISLDYTVGEEGASTLLDLMECGTP 148 Query: 117 NPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 176 +P ++ E +++ + L + R +TL L+Y EIA ++ +GTV+SRI R Sbjct: 149 SPPREAVTREFTELIAVGMARLEDRQRAILTLSHT--LAYGEIARVLGINIGTVKSRIAR 206 Query: 177 AREAIDNKVQP 187 AR+ + + Sbjct: 207 ARDNLRACLSA 217 >UniRef50_Q08PQ9 RNA polymerase sigma factor CarQ n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08PQ9_STIAU Length = 281 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 11/185 (5%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + +D+ L+ R +GD AFN L RY V ++R S D+VQ F+ RA Sbjct: 100 EASDEALMARFCQGDAAAFNELFQRYARPVQGYLTRLTGSRTAAEDLVQVTFLSLVRARG 159 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 F + WLY IA N A++ R + + AE A + +P + Sbjct: 160 RFLSGARLKPWLYAIATNAARDQQRRNAR------PEELTAEGELPVHAAADTQDPRDPG 213 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 L V R + LPE R+ I L +G+S+ EIA M V+ R R + Sbjct: 214 LER----TVQRALSLLPEGQRVPIVLHRFEGMSFAEIAEAMGLTETAVKVRAHRGYARLR 269 Query: 183 NKVQP 187 + Sbjct: 270 ELLAQ 274 >UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP6_ALIAD Length = 177 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 15/183 (8%) Query: 4 QLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALD 62 + D L+ R + GD +A +V YQ V + + D D QEAFI+A+R+L Sbjct: 2 EQADLELIRRARHGDPQAIETIVRNYQSFVYRTAYGILQNAADAEDATQEAFIRAFRSLG 61 Query: 63 SFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLM 122 R D F TWL RIAV + + + A+ RR + ++ E+ Sbjct: 62 RLREDRTFPTWLARIAVRISLDMVQAKARR-----------AQDPTEEIHGSVAGGEDAA 110 Query: 123 LSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAID 182 LR + R + L + R I LR GL Y+EIA ++D P+GTVRSR+ AR + Sbjct: 111 S---LRIDLERALAKLSPEHRTVIVLRAFHGLEYDEIAEVLDIPIGTVRSRLHHARMQLR 167 Query: 183 NKV 185 + Sbjct: 168 MYL 170 >UniRef50_C3BA74 Putative uncharacterized protein n=3 Tax=Bacillus RepID=C3BA74_BACMY Length = 192 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 12/184 (6%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 E + + LV++ +KGD AF L+ YQ ++ YV + D D+VQE KAY ++ Sbjct: 5 ETMDEIKLVKKARKGDDAAFEQLISLYQDQLYRTAYLYVQNKEDALDIVQETVYKAYLSI 64 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + + + F TWL RI ++ A L + + D + Sbjct: 65 EQLKKPNYFLTWLTRILIHNAYQLLSEKKKVKKIEDGREADTYGEMPN-----------K 113 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + E + I+ L E+ + I L LS +IA M+ P GTV++ + RAR+A+ Sbjct: 114 LHQIEQNIDLQEAIQKLDENYQTVIILYYYHDLSINKIAWQMNIPEGTVKTYLHRARKAL 173 Query: 182 DNKV 185 N + Sbjct: 174 KNLL 177 >UniRef50_A9WPF4 RNA polymerase sigma-E factor n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WPF4_RENSM Length = 268 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 22 FNLLVVRYQHKVASLVSRYVPSG-DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN 80 + +V + KV L R + D D+ QE F++ +R+L +F + WL+RI N Sbjct: 81 WEEVVRNHSAKVFRLAYRLTGNKFDAEDLTQEVFVRVFRSLANFTPGT-LDGWLHRITTN 139 Query: 81 TAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPE 140 + + R + + E PE L + + +++LP Sbjct: 140 LFLDQARRKSRIRFDALAEDAET------RLPGRDPGPERSFEFNNLDVDIQKALDALPP 193 Query: 141 DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186 D R A+ L +L+GLSY+E+AA +D +GTVRSRI R R + + Sbjct: 194 DFRAAVVLCDLEGLSYDEVAAALDVKLGTVRSRIHRGRIMLRASLA 239 >UniRef50_D0XTW0 RNA polymerase sigma factor n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW0_9CAUL Length = 216 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 5/186 (2%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRAL 61 + D+ L E + GD++AF +LV R+ V L + + D+ QEAF+ A+RA Sbjct: 14 QSWADETLFEAARGGDEQAFRVLVDRHARVVRRLALSILSDAHEAEDIAQEAFVAAWRAK 73 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 D++ D+ F TWL+RIAVN A + + P +DV + + + Sbjct: 74 DNWTPDARFTTWLHRIAVNKAIDRYRRRRATPEPNDV----ITRLADAAPSAPVEDQQQA 129 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 + E + + ++ LP+ R A+TL + L IA ++D VRS + R ++A+ Sbjct: 130 LERRESARSLRDCLQRLPDSQRQALTLYYFEDLDVGRIAGVLDTTEQAVRSLLKRGKQAL 189 Query: 182 DNKVQP 187 +Q Sbjct: 190 RLLIQR 195 >UniRef50_C3KMI0 RNA polymerase sigma factor n=1 Tax=Rhizobium sp. NGR234 RepID=C3KMI0_RHISN Length = 242 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%) Query: 18 DQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYR 76 D AF L+ + K+ + V + D DV+QEA+++A+ FRGD+A TWL R Sbjct: 18 DLAAFRALMQSHNRKLYRIARSIVRNNSDAEDVLQEAYVRAFTHFPEFRGDAAITTWLAR 77 Query: 77 IAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIE 136 I +N A L R+ ++ E F + S+PE M ++ +V + + Sbjct: 78 IVINEALGRLRKSRRQMRLAETHQAEIIAFPLN---SDGSDPEKTMAQRQILDLVEKLTD 134 Query: 137 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 187 LP+ R LR ++GL+ EE A+++ TVR+R+ RAR + +++ Sbjct: 135 HLPDVYRSVFVLRVIEGLNNEETASLLGLKPETVRTRLHRARHLLKEQLEK 185 >UniRef50_Q3APD6 RNA polymerase sigma factor n=10 Tax=Chlorobiaceae RepID=Q3APD6_CHLCH Length = 233 Score = 172 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 1/164 (0%) Query: 29 YQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLV 87 + + + + + D D+VQE ++KAYR DSF + WL++I N N Sbjct: 57 HLNSLYNYALHLTMNADDAEDLVQETYLKAYRFFDSFEKGTNCKAWLFKILKNNYINRFR 116 Query: 88 AQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAIT 147 R P D DAI+ + S E+ L + V++ ++SLPE+ R I Sbjct: 117 KDTREPGFVDYDAIKDFYHTIKDVQSDTSETESDYFHSLLHEEVYQALKSLPEEFREVIQ 176 Query: 148 LRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR 191 L +++G +YEEIA +++ P+GTVRSR++R R+ + +++ + Sbjct: 177 LCDIEGFTYEEIANMVESPIGTVRSRLYRGRKLLHEQLKEYAEK 220 >UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5Q9_GEMAT Length = 187 Score = 172 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 14/187 (7%) Query: 3 EQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRAL 61 E L ++ LV Q GD AF LV R+Q + ++ V D D VQE F+ A+RAL Sbjct: 10 EALEERELVLAAQAGDNVAFAGLVRRHQRRAYAVARAIVLSHDDAEDAVQEGFLHAFRAL 69 Query: 62 DSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENL 121 + FR + AF WL+RI N A + + R + + + + + Sbjct: 70 ERFRPEQAFGAWLHRIVANAALDIARRRKVRDADELPETLSSPHRDP------------- 116 Query: 122 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181 S+ELR + R +++L E R I L +++G + EI ++ P GT RS + AR + Sbjct: 117 AESDELRARLTRALDTLGERQRAVIVLHDVEGYKHAEIGTLLGIPEGTARSDLHHARAHL 176 Query: 182 DNKVQPL 188 ++ L Sbjct: 177 RRQLSNL 183 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.199 0.670 Lambda K H 0.267 0.0616 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,875,319,758 Number of Sequences: 3077464 Number of extensions: 131241756 Number of successful extensions: 475797 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 10714 Number of HSP's successfully gapped in prelim test: 4345 Number of HSP's that attempted gapping in prelim test: 441476 Number of HSP's gapped (non-prelim): 16265 length of query: 191 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 70 effective length of database: 668,023,212 effective search space: 46761624840 effective search space used: 46761624840 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 91 (39.1 bits)