Phyre 2 Results for P27848

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Email | l.a.kelley@imperial.ac.uk
Description | P27848
Date | Thu Jan 5 11:44:21 GMT 2012
Unique Job ID | a5b34648a9a22eb3

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3pgvB_
Top template information
PDB header:hydrolase Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase2 (kpn_04322) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at3 2.39 a resolution
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
257 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Y | Q | V | V | A | S | D | L | D | G | T | L | L | S | P | D | H | T | L | S | P | Y | A | K | E | T | L | K | L | L | T | A | R | G | I | N | F | V | F | A | T | G | R | H | H | V | D | V | G | Q | I | R | D | N | L | E | I | K | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Y | M | I | T | S | N | G | A | R | V | H | D | L | D | G | N | L | I | F | A | H | N | L | D | R | D | I | A | S | D | L | F | G | V | V | N | D | N | P | D | I | I | T | N | V | Y | R | D | D | E | W | F | M | N | R | H | R | P | E | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | M | R | F | F | K | E | A | V | F | Q | Y | A | L | Y | E | P | G | L | L | E | P | E | G | V | S | K | V | F | F | T | C | D | S | H | E | Q | L | L | P | L | E | Q | A | I | N | A | R | W | G | D | R | V | N | V | S | F | S | T | L | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | C | L | E | V | M | A | G | G | V | S | K | G | H | A | L | E | A | V | A | K | K | L | G | Y | S | L | K | D | C | I | A | F | G | D | G | M | N | D | A | E | M | L | S | M | A | G | K | G | C | I | M | G | S | A | H | Q | R | L | K | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | .
Sequence |  | L | H | P | E | L | E | V | I | G | T | N | A | D | D | A | V | P | H | Y | L | R | K | L | Y | L | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3pgvB_ |

### PDB 3pgv chain B

Region: 1 - 266
Aligned: 257
Modelled: 256
Confidence: 100.0%
Identity: 82%
PDB header:hydrolase
Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase2 (kpn_04322) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at3 2.39 a resolution

Phyre2
2 |
| c3niwA_ |

### PDB 3niw chain A

Region: 2 - 264
Aligned: 261
Modelled: 263
Confidence: 100.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron

Phyre2
3 |
| c3dnpA_ |

### PDB 3dnp chain A

Region: 3 - 265
Aligned: 261
Modelled: 263
Confidence: 100.0%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:stress response protein yhax;
PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis

Phyre2
4 |
| d1nrwa_ |

### PDB 1nrw chain A

Region: 3 - 264
Aligned: 259
Modelled: 262
Confidence: 100.0%
Identity: 27%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
5 |
| d1nf2a_ |

### PDB 1nf2 chain A

Region: 1 - 266
Aligned: 263
Modelled: 266
Confidence: 100.0%
Identity: 24%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
6 |
| d1rlma_ |

### PDB 1rlm chain A

Region: 2 - 266
Aligned: 262
Modelled: 265
Confidence: 100.0%
Identity: 21%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
7 |
| c3fzqA_ |

### PDB 3fzq chain A

Region: 1 - 265
Aligned: 258
Modelled: 260
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution

Phyre2
8 |
| c2qyhD_ |

### PDB 2qyh chain D

Region: 2 - 265
Aligned: 254
Modelled: 264
Confidence: 100.0%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical conserved protein, gk1056;
PDBTitle: crystal structure of the hypothetical protein (gk1056) from2 geobacillus kaustophilus hta426

Phyre2
9 |
| c3daoB_ |

### PDB 3dao chain B

Region: 1 - 264
Aligned: 262
Modelled: 263
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:putative phosphatse;
PDBTitle: crystal structure of a putative phosphatse (eubrec_1417) from2 eubacterium rectale at 1.80 a resolution

Phyre2
10 |
| d1rkqa_ |

### PDB 1rkq chain A

Region: 1 - 266
Aligned: 264
Modelled: 266
Confidence: 100.0%
Identity: 27%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
11 |
| d2rbka1 |

### PDB 2rbk chain A domain 1

Region: 3 - 265
Aligned: 255
Modelled: 263
Confidence: 100.0%
Identity: 18%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
12 |
| c3r4cA_ |

### PDB 3r4c chain A

Region: 1 - 265
Aligned: 256
Modelled: 265
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like hydrolase;
PDBTitle: divergence of structure and function among phosphatases of the2 haloalkanoate (had) enzyme superfamily: analysis of bt1666 from3 bacteroides thetaiotaomicron

Phyre2
13 |
| c3l7yA_ |

### PDB 3l7y chain A

Region: 2 - 266
Aligned: 262
Modelled: 265
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein smu.1108c;
PDBTitle: the crystal structure of smu.1108c from streptococcus mutans ua159

Phyre2
14 |
| d2b30a1 |

### PDB 2b30 chain A domain 1

Region: 1 - 264
Aligned: 263
Modelled: 264
Confidence: 100.0%
Identity: 15%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
15 |
| c3gygA_ |

### PDB 3gyg chain A

Region: 2 - 264
Aligned: 242
Modelled: 244
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb;
PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis

Phyre2
16 |
| c3mpoD_ |

### PDB 3mpo chain D

Region: 2 - 240
Aligned: 228
Modelled: 239
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: D: PDB Molecule:predicted hydrolase of the had superfamily;
PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis

Phyre2
17 |
| d1s2oa1 |

### PDB 1s2o chain A domain 1

Region: 1 - 266
Aligned: 235
Modelled: 249
Confidence: 100.0%
Identity: 18%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
18 |
| d1l6ra_ |

### PDB 1l6r chain A

Region: 1 - 265
Aligned: 223
Modelled: 230
Confidence: 100.0%
Identity: 19%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
19 |
| d1wr8a_ |

### PDB 1wr8 chain A

Region: 2 - 264
Aligned: 223
Modelled: 227
Confidence: 100.0%
Identity: 17%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
20 |
| d1xvia_ |

### PDB 1xvi chain A

Region: 1 - 234
Aligned: 219
Modelled: 222
Confidence: 100.0%
Identity: 17%
Fold: HAD-like
Superfamily: HAD-like
Family: Predicted hydrolases Cof

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3pgvB_ |
|  | 100.0 | 82 | PDB header:hydrolase Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase2 (kpn_04322) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at3 2.39 a resolution
2 | c3niwA_ |
|  | 100.0 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron
3 | c3dnpA_ |
|  | 100.0 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis
4 | d1nrwa_ |
|  | 100.0 | 27 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
5 | d1nf2a_ |
|  | 100.0 | 24 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
6 | d1rlma_ |
|  | 100.0 | 21 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
7 | c3fzqA_ |
|  | 100.0 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution
8 | c2qyhD_ |
|  | 100.0 | 24 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical conserved protein, gk1056; PDBTitle: crystal structure of the hypothetical protein (gk1056) from2 geobacillus kaustophilus hta426
9 | c3daoB_ |
|  | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:putative phosphatse; PDBTitle: crystal structure of a putative phosphatse (eubrec_1417) from2 eubacterium rectale at 1.80 a resolution
10 | d1rkqa_ |
|  | 100.0 | 27 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
11 | d2rbka1 |
|  | 100.0 | 18 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
12 | c3r4cA_ |
|  | 100.0 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like hydrolase; PDBTitle: divergence of structure and function among phosphatases of the2 haloalkanoate (had) enzyme superfamily: analysis of bt1666 from3 bacteroides thetaiotaomicron
13 | c3l7yA_ |
|  | 100.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1108c; PDBTitle: the crystal structure of smu.1108c from streptococcus mutans ua159
14 | d2b30a1 |
|  | 100.0 | 15 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
15 | c3gygA_ |
|  | 100.0 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb; PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis
16 | c3mpoD_ |
|  | 100.0 | 23 | PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis
17 | d1s2oa1 |
|  | 100.0 | 18 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
18 | d1l6ra_ |
|  | 100.0 | 19 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
19 | d1wr8a_ |
|  | 100.0 | 17 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
20 | d1xvia_ |
|  | 100.0 | 17 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
21 | c1xviA_ |
| not modelled | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12
22 | d1wzca1 |
| not modelled | 100.0 | 16 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
23 | c2i55C_ |
| not modelled | 100.0 | 18 | PDB header:isomerase Chain: C: PDB Molecule:phosphomannomutase; PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana
24 | d1u02a_ |
| not modelled | 100.0 | 13 | Fold:HAD-like Superfamily:HAD-like Family:Trehalose-phosphatase
25 | d2amya1 |
| not modelled | 100.0 | 17 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
26 | d2fuea1 |
| not modelled | 100.0 | 18 | Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof
27 | d1k1ea_ |
| not modelled | 99.9 | 28 | Fold:HAD-like Superfamily:HAD-like Family:Probable phosphatase YrbI
28 | c3mmzA_ |
| not modelled | 99.9 | 27 | PDB header:hydrolase Chain: A: PDB Molecule:putative had family hydrolase; PDBTitle: crystal structure of putative had family hydrolase from streptomyces2 avermitilis ma-4680
29 | c3e8mD_ |
| not modelled | 99.9 | 29 | PDB header:transferase Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase; PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily
30 | c3mn1B_ |
| not modelled | 99.9 | 27 | PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a
31 | c2r8zC_ |
| not modelled | 99.9 | 26 | PDB header:hydrolase Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion
32 | c3n1uA_ |
| not modelled | 99.9 | 30 | PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila
33 | c3ewiB_ |
| not modelled | 99.9 | 24 | PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase
34 | c3n07B_ |
| not modelled | 99.9 | 27 | PDB header:hydrolase Chain: B: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: structure of putative 3-deoxy-d-manno-octulosonate 8-phosphate2 phosphatase from vibrio cholerae
35 | c2p9jH_ |
| not modelled | 99.9 | 19 | PDB header:structural genomics, unknown function Chain: H: PDB Molecule:hypothetical protein aq2171; PDBTitle: crystal structure of aq2171 from aquifex aeolicus
36 | c3p96A_ |
| not modelled | 99.9 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase serb; PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form
37 | c3n28A_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase; PDBTitle: crystal structure of probable phosphoserine phosphatase from vibrio2 cholerae, unliganded form
38 | c2hx1D_ |
| not modelled | 99.8 | 14 | PDB header:hydrolase Chain: D: PDB Molecule:predicted sugar phosphatases of the had PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution
39 | d1j97a_ |
| not modelled | 99.8 | 17 | Fold:HAD-like Superfamily:HAD-like Family:Phosphoserine phosphatase
40 | c2cftA_ |
| not modelled | 99.8 | 16 | PDB header:phosphatase Chain: A: PDB Molecule:pyridoxal phosphate phosphatase; PDBTitle: crystal structure of human pyridoxal 5'-phosphate2 phosphatase with its substrate
41 | c3fvvA_ |
| not modelled | 99.8 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein with unknown function from2 bordetella pertussis tohama i
42 | d1rkua_ |
| not modelled | 99.8 | 17 | Fold:HAD-like Superfamily:HAD-like Family:Homoserine kinase ThrH
43 | c3m1yA_ |
| not modelled | 99.8 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase (serb); PDBTitle: crystal structure of a phosphoserine phosphatase (serb) from2 helicobacter pylori
44 | d1yv9a1 |
| not modelled | 99.7 | 17 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
45 | c3pdwA_ |
| not modelled | 99.7 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized hydrolase yutf; PDBTitle: crystal structure of putative p-nitrophenyl phosphatase from bacillus2 subtilis
46 | d1wvia_ |
| not modelled | 99.7 | 15 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
47 | d1ydfa1 |
| not modelled | 99.7 | 19 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
48 | d1nnla_ |
| not modelled | 99.7 | 25 | Fold:HAD-like Superfamily:HAD-like Family:Phosphoserine phosphatase
49 | d1ys9a1 |
| not modelled | 99.7 | 18 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
50 | c3kd3A_ |
| not modelled | 99.6 | 24 | PDB header:unknown function Chain: A: PDB Molecule:phosphoserine phosphohydrolase-like protein; PDBTitle: crystal structure of a phosphoserine phosphohydrolase-like protein2 from francisella tularensis subsp. tularensis schu s4
51 | c1zjjA_ |
| not modelled | 99.6 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ph1952; PDBTitle: crystal structure of hypothetical protein ph1952 from pyrococcus2 horikoshii ot3
52 | c3qgmC_ |
| not modelled | 99.5 | 14 | PDB header:hydrolase Chain: C: PDB Molecule:p-nitrophenyl phosphatase (pho2); PDBTitle: p-nitrophenyl phosphatase from archaeoglobus fulgidus
53 | d2c4na1 |
| not modelled | 99.5 | 13 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
54 | d1vjra_ |
| not modelled | 99.5 | 15 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
55 | d1y8aa1 |
| not modelled | 99.5 | 16 | Fold:HAD-like Superfamily:HAD-like Family:AF1437-like
56 | d1wpga2 |
| not modelled | 99.4 | 25 | Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P
57 | c2iyeC_ |
| not modelled | 99.4 | 23 | PDB header:hydrolase Chain: C: PDB Molecule:copper-transporting atpase; PDBTitle: structure of catalytic cpx-atpase domain copb-b
58 | d2feaa1 |
| not modelled | 99.3 | 15 | Fold:HAD-like Superfamily:HAD-like Family:MtnX-like
59 | d1zs9a1 |
| not modelled | 99.3 | 20 | Fold:HAD-like Superfamily:HAD-like Family:Enolase-phosphatase E1
60 | c3rfuC_ |
| not modelled | 99.2 | 27 | PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase
61 | d2gmwa1 |
| not modelled | 99.2 | 20 | Fold:HAD-like Superfamily:HAD-like Family:Histidinol phosphatase-like
62 | d1u7pa_ |
| not modelled | 99.1 | 23 | Fold:HAD-like Superfamily:HAD-like Family:Magnesium-dependent phosphatase-1, Mdp1
63 | c3l8hC_ |
| not modelled | 99.1 | 19 | PDB header:hydrolase Chain: C: PDB Molecule:putative haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of d,d-heptose 1.7-bisphosphate phosphatase from b.2 bronchiseptica complexed with magnesium and phosphate
64 | c3mc1A_ |
| not modelled | 99.1 | 29 | PDB header:hydrolase Chain: A: PDB Molecule:predicted phosphatase, had family; PDBTitle: crystal structure of a predicted phosphatase from2 clostridium acetobutylicum
65 | c3b9bA_ |
| not modelled | 99.1 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase
66 | c3esqA_ |
| not modelled | 99.1 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:d,d-heptose 1,7-bisphosphate phosphatase; PDBTitle: crystal structure of calcium-bound d,d-heptose 1.7-2 bisphosphate phosphatase from e. coli
67 | c2pibA_ |
| not modelled | 99.1 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:phosphorylated carbohydrates phosphatase tm_1254; PDBTitle: crystal structure of putative beta-phosphoglucomutase from2 thermotoga maritima
68 | c3iruA_ |
| not modelled | 99.1 | 26 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phoshonoacetaldehyde hydrolase like protein; PDBTitle: crystal structure of phoshonoacetaldehyde hydrolase like protein from2 oleispira antarctica
69 | c2ho4A_ |
| not modelled | 99.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase domain PDBTitle: crystal structure of protein from mouse mm.236127
70 | c2zxeA_ |
| not modelled | 99.0 | 23 | PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
71 | c3j08A_ |
| not modelled | 99.0 | 29 | PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
72 | c1cr6A_ |
| not modelled | 99.0 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor
73 | c1mhsA_ |
| not modelled | 99.0 | 20 | PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase
74 | c3j09A_ |
| not modelled | 99.0 | 31 | PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
75 | d1cr6a1 |
| not modelled | 99.0 | 17 | Fold:HAD-like Superfamily:HAD-like Family:YihX-like
76 | d2o2xa1 |
| not modelled | 98.9 | 19 | Fold:HAD-like Superfamily:HAD-like Family:Histidinol phosphatase-like
77 | c3d6jA_ |
| not modelled | 98.9 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:putative haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 from bacteroides fragilis
78 | d2fdra1 |
| not modelled | 98.9 | 14 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
79 | d1o08a_ |
| not modelled | 98.9 | 17 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
80 | d2b8ea1 |
| not modelled | 98.9 | 34 | Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P
81 | c3b8cB_ |
| not modelled | 98.9 | 22 | PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump
82 | c3m9lA_ |
| not modelled | 98.9 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like family; PDBTitle: crystal structure of probable had family hydrolase from2 pseudomonas fluorescens pf-5
83 | c3b8eC_ |
| not modelled | 98.9 | 15 | PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump
84 | c3ixzA_ |
| not modelled | 98.9 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
85 | c3kc2A_ |
| not modelled | 98.9 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae
86 | d1x42a1 |
| not modelled | 98.9 | 17 | Fold:HAD-like Superfamily:HAD-like Family:HAD-related
87 | c2hoqA_ |
| not modelled | 98.9 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:putative had-hydrolase ph1655; PDBTitle: crystal structure of the probable haloacid dehalogenase (ph1655) from2 pyrococcus horikoshii ot3
88 | c3dv9A_ |
| not modelled | 98.8 | 24 | PDB header:isomerase Chain: A: PDB Molecule:beta-phosphoglucomutase; PDBTitle: putative beta-phosphoglucomutase from bacteroides vulgatus.
89 | c2hi0B_ |
| not modelled | 98.8 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:putative phosphoglycolate phosphatase; PDBTitle: crystal structure of putative phosphoglycolate phosphatase2 (yp_619066.1) from lactobacillus delbrueckii subsp. bulgaricus atcc3 baa-365 at 1.51 a resolution
90 | d2hcfa1 |
| not modelled | 98.7 | 13 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
91 | d1swva_ |
| not modelled | 98.7 | 14 | Fold:HAD-like Superfamily:HAD-like Family:Phosphonoacetaldehyde hydrolase-like
92 | d1qq5a_ |
| not modelled | 98.7 | 14 | Fold:HAD-like Superfamily:HAD-like Family:HAD-related
93 | d1xpja_ |
| not modelled | 98.7 | 16 | Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232
94 | d2fpwa1 |
| not modelled | 98.7 | 26 | Fold:HAD-like Superfamily:HAD-like Family:Histidinol phosphatase-like
95 | d1zd3a1 |
| not modelled | 98.7 | 14 | Fold:HAD-like Superfamily:HAD-like Family:YihX-like
96 | d2hsza1 |
| not modelled | 98.7 | 12 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
97 | d2ah5a1 |
| not modelled | 98.6 | 18 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
98 | c3cnhA_ |
| not modelled | 98.6 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:hydrolase family protein; PDBTitle: crystal structure of predicted hydrolase of haloacid dehalogenase-like2 superfamily (np_295428.1) from deinococcus radiodurans at 1.66 a3 resolution
99 | c3kzxA_ |
| not modelled | 98.6 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:had-superfamily hydrolase, subfamily ia, variant 1; PDBTitle: crystal structure of a had-superfamily hydrolase from ehrlichia2 chaffeensis at 1.9a resolution
100 | c3s6jC_ |
| not modelled | 98.6 | 15 | PDB header:hydrolase Chain: C: PDB Molecule:hydrolase, haloacid dehalogenase-like family; PDBTitle: the crystal structure of a hydrolase from pseudomonas syringae
101 | c3nuqA_ |
| not modelled | 98.6 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:putative nucleotide phosphatase; PDBTitle: structure of a putative nucleotide phosphatase from saccharomyces2 cerevisiae
102 | c2om6A_ |
| not modelled | 98.5 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:probable phosphoserine phosphatase; PDBTitle: hypothetical protein (probable phosphoserine phosph (ph0253) from2 pyrococcus horikoshii ot3
103 | d2obba1 |
| not modelled | 98.5 | 22 | Fold:HAD-like Superfamily:HAD-like Family:BT0820-like
104 | d1te2a_ |
| not modelled | 98.5 | 14 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
105 | c3qnmA_ |
| not modelled | 98.5 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: haloalkane dehalogenase family member from bacteroides2 thetaiotaomicron of unknown function
106 | c2pkeA_ |
| not modelled | 98.5 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:haloacid delahogenase-like family hydrolase; PDBTitle: crystal structure of haloacid delahogenase-like family hydrolase2 (np_639141.1) from xanthomonas campestris at 1.81 a resolution
107 | c2b8eB_ |
| not modelled | 98.5 | 34 | PDB header:membrane protein Chain: B: PDB Molecule:cation-transporting atpase; PDBTitle: copa atp binding domain
108 | c3nasA_ |
| not modelled | 98.5 | 14 | PDB header:isomerase Chain: A: PDB Molecule:beta-phosphoglucomutase; PDBTitle: the crystal structure of beta-phosphoglucomutase from bacillus2 subtilis
109 | c3ddhA_ |
| not modelled | 98.5 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:putative haloacid dehalogenase-like family hydrolase; PDBTitle: the structure of a putative haloacid dehalogenase-like family2 hydrolase from bacteroides thetaiotaomicron vpi-5482
110 | d2go7a1 |
| not modelled | 98.4 | 15 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
111 | d2gfha1 |
| not modelled | 98.4 | 15 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
112 | d1zrna_ |
| not modelled | 98.4 | 26 | Fold:HAD-like Superfamily:HAD-like Family:HAD-related
113 | c2yy6B_ |
| not modelled | 98.4 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:phosphoglycolate phosphatase; PDBTitle: crystal structure of the phosphoglycolate phosphatase from aquifex2 aeolicus vf5
114 | c2i6xA_ |
| not modelled | 98.4 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like family; PDBTitle: the structure of a predicted had-like family hydrolase from2 porphyromonas gingivalis.
115 | c3e58A_ |
| not modelled | 98.4 | 10 | PDB header:isomerase Chain: A: PDB Molecule:putative beta-phosphoglucomutase; PDBTitle: crystal structure of putative beta-phosphoglucomutase from2 streptococcus thermophilus
116 | c2g80C_ |
| not modelled | 98.4 | 13 | PDB header:hydrolase Chain: C: PDB Molecule:protein utr4; PDBTitle: crystal structure of utr4 protein (unknown transcript 4 protein)2 (yel038w) from saccharomyces cerevisiae at 2.28 a resolution
117 | d2hdoa1 |
| not modelled | 98.4 | 12 | Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like
118 | c3k1zA_ |
| not modelled | 98.4 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase domain-containing PDBTitle: crystal structure of human haloacid dehalogenase-like hydrolase domain2 containing 3 (hdhd3)
119 | d2fi1a1 |
| not modelled | 98.3 | 26 | Fold:HAD-like Superfamily:HAD-like Family:Phosphonoacetaldehyde hydrolase-like
120 | c3sd7A_ |
| not modelled | 98.3 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:putative phosphatase; PDBTitle: 1.7 angstrom resolution crystal structure of putative phosphatase from2 clostridium difficile

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0