17/01/2012 19:23:39 : INFO  : Run start: Tue Jan 17 19:23:39 GMT 2012
17/01/2012 19:23:42 : INFO  : Initialised job
17/01/2012 19:23:43 : INFO  : Renaming log file 'phyre2_20120117_192339.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a5b34648a9a22eb3/phyre_20120117_192339.log'
17/01/2012 19:23:44 : INFO  : Initialised job:
Sequence
>batch____
MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKS
YMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEE
MRFFKEAVFQYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLT
CLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKD
LHPELEVIGTNADDAVPHYLRKLYLS

17/01/2012 19:23:44 : INFO  : Checked sequence
17/01/2012 19:23:46 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 19:23:46 : INFO  : PSI-BLAST 3 iterations
17/01/2012 19:25:54 : INFO  : PSI-BLAST 5 iterations
17/01/2012 19:28:06 : INFO  : Finished PSI-BLAST
17/01/2012 19:28:07 : INFO  : Running Buildali to generate a3m file
17/01/2012 19:46:03 : INFO  : Converting to HMM
17/01/2012 19:46:08 : INFO  : Calibrating HMM
17/01/2012 19:46:19 : INFO  : Searching HMM database
17/01/2012 19:52:57 : INFO  : Finished buildali
17/01/2012 19:52:57 : INFO  : Predicting secondary structure
17/01/2012 19:53:02 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 19:53:03 : INFO  : Predicting Disordered regions
17/01/2012 19:53:05 : INFO  : Predicted Disorder (Disopred)
17/01/2012 19:53:06 : INFO  : Running memsat_svm check
17/01/2012 19:54:42 : INFO  : Globular protein
17/01/2012 19:54:43 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a5b34648a9a22eb3'
17/01/2012 19:54:44 : INFO  : Initialising fold library search
17/01/2012 19:54:46 : INFO  : Initialised search input
17/01/2012 19:54:47 : INFO  : Building Ensemble models
17/01/2012 19:54:49 : INFO  : Building hh.c3pgvB_.model.1.pdb
17/01/2012 19:54:59 : INFO  : Building c3pgvB_.1.pdb
17/01/2012 19:55:08 : INFO  : Building c3niwA_.2.pdb
17/01/2012 19:55:18 : INFO  : Building c3dnpA_.3.pdb
17/01/2012 19:55:26 : INFO  : Building d1nrwa_.4.pdb
17/01/2012 19:55:36 : INFO  : Building d1nf2a_.5.pdb
17/01/2012 19:55:46 : INFO  : Building d1rlma_.6.pdb
17/01/2012 19:55:55 : INFO  : Building c3fzqA_.7.pdb
17/01/2012 19:56:04 : INFO  : Building c2qyhD_.8.pdb
17/01/2012 19:56:12 : INFO  : Building c3daoB_.9.pdb
17/01/2012 19:56:23 : INFO  : Building d1rkqa_.10.pdb
17/01/2012 19:56:32 : INFO  : Building d2rbka1.11.pdb
17/01/2012 19:56:41 : INFO  : Building c3r4cA_.12.pdb
17/01/2012 19:56:51 : INFO  : Building c3l7yA_.13.pdb
17/01/2012 19:56:59 : INFO  : Building d2b30a1.14.pdb
17/01/2012 19:57:08 : INFO  : Building c3gygA_.15.pdb
17/01/2012 19:57:17 : INFO  : Building c3mpoD_.16.pdb
17/01/2012 19:57:26 : INFO  : Building d1s2oa1.17.pdb
17/01/2012 19:57:35 : INFO  : Building d1l6ra_.18.pdb
17/01/2012 19:57:44 : INFO  : Building d1wr8a_.19.pdb
17/01/2012 19:57:54 : INFO  : Building d1xvia_.20.pdb
17/01/2012 19:58:13 : INFO  : Finished HH model building
17/01/2012 19:58:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 19:58:55 : INFO  : html domain output complete ID 'a5b34648a9a22eb3'
17/01/2012 21:00:56 : INFO  : Run end  : Tue Jan 17 21:00:55 GMT 2012
