78 d2hoxa1 Probab=100.00  E-value=0  Score=290.61  Aligned_columns=330  Identities=16%

Q ss_pred             CCCCEECCCCCCCCCCCHHHHHHHHHHHHC---CCCCC-----CCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHH
Q ss_conf             998087756899887898999999999967---87669-----9878889999999999997178888545798188899
Q batch____        27 TADLLPFTISDMDFATAPCIIEALNQRLMH---GVFGY-----SRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIY   98 (390)
Q Consensus        27 ~~~ii~l~~g~~~~~~~~~v~~a~~~~~~~---~~~~Y-----~~~~~~~lr~aia~~~~~~~g~~~~~e~I~~t~G~~~   98 (390)
                      +..++++..|+|.|..+-...++...++..   +...|     .+....+|++.|++.+....+..+++++|++|+|+++
T Consensus        55 ~~~~~~~~~gdp~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~  134 (425)
T d2hoxa1          55 QGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQ  134 (425)
T ss_dssp             TTCCEECCSCCCGGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHH
T ss_conf             65543466788554636641142100011245554565456643445289999999998850886788776999468899


Q ss_pred             HHHHHHHHHCCCCCE--------EEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEECCC
Q ss_conf             999999731148989--------999089727899999971981379884446788654989998850255650011146
Q batch____        99 MVSELIRQWSETGEG--------VVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCS  170 (390)
Q Consensus        99 al~~~~~~l~~~Gd~--------Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  170 (390)
                      +|+++++++++|||.        |++..|+|+.|...+...|.....+.++.+.          ..........++++++
T Consensus       135 ~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~d~~~----------~~~~~~~~~~~~~i~~  204 (425)
T d2hoxa1         135 LIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAAN----------YVNVSNPEQYIEMVTS  204 (425)
T ss_dssp             HHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEEEGGG----------GTTCSCGGGEEEEEES
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHH----------HHHHCCCCCEEEEECC
T ss_conf             999999986488861235677435730023778999998559974442479889----------9972488857999817


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCH
Q ss_conf             79986524308999764656775598599974532222575453134443026822652023000574430688853887
Q batch____       171 PQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENS  250 (390)
Q Consensus       171 ~n~p~~~~~~~~~l~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~Glr~G~~~~~~~  250 (390)
                      ||||||.+++          +.++++++|+||+|.+..+.......      +++++++|+||.++++|+|+||+++++.
T Consensus       205 P~NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~~~~~~------~~~i~~~S~SK~~g~~GlRiG~~i~~~~  268 (425)
T d2hoxa1         205 PNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPIKYKA------DEDILLFTMSKFTGHSGSRFGWALIKDE  268 (425)
T ss_dssp             SCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCCCSCB------CCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred             CCCCCCEEEE----------EEECCCEEEEECCCCCCCCCCCCCCC------CCEEEEEECCCCCCCCCCCEEEEEECCH
T ss_conf             8888560654----------23239689971432343323333456------8549998155101233231018996898


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHCC----------
Q ss_conf             88899999987513677834799999999721-----------521799999999999999998753203----------
Q batch____       251 SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQ-----------QGAPWLDALRIYLKDNLTYIADKMNAA----------  309 (390)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~----------  309 (390)
                      .+.+.........  ..+++...+.++..++.           ....+.+..+..++++++.+.+.+...          
T Consensus       269 ~i~~~l~~~~~~~--~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~  346 (425)
T d2hoxa1         269 SVYNNLLNYMTKN--TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQ  346 (425)
T ss_dssp             HHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCS
T ss_pred             HHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9999999864105--77736899999999960201345655554899999999999999999999986357630034565


Q ss_pred             ---CCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             ---58838833687349999767888898999999998579599916231878897799990399899999999999999
Q batch____       310 ---FPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI  386 (390)
Q Consensus       310 ---~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~~Ll~~~gI~v~pG~~F~~~~~~~iRis~~~~~e~l~~~l~rL~~~l  386 (390)
                         ...+....|.+++|+|++++   .++.+.+..+++++||.++||+.|| .+++|+|||++.++|+++++++||++++
T Consensus       347 ~~~~~~~~~~~~~~~~f~w~~~~---~~~~~~~~~lL~e~GI~v~pGs~FG-~~~~~vRiSl~~~~e~ld~~l~rL~~~v  422 (425)
T d2hoxa1         347 SEYCNYFRRMRPPSPSYAWVKCE---WEEDKDCYQTFQNGRINTQNGVGFE-ASSRYVRLSLIKTQDDFDQLMYYLKDMV  422 (425)
T ss_dssp             CEEETTTTEEECCCCSEEEEEEC---SGGGCSHHHHHHHTTEECEEGGGGT-SCTTEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCEEEEECC---CCCHHHHHHHHHHCCEEEECCCCCC-CCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             54322100137787616998678---9808999999996694997170238-9886599991399899999999999987


Q ss_pred             HH
Q ss_conf             86
Q batch____       387 RA  388 (390)
Q Consensus       387 ~~  388 (390)
                      ++
T Consensus       423 ~~  424 (425)
T d2hoxa1         423 KA  424 (425)
T ss_dssp             TC
T ss_pred             HC
T ss_conf             26