BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (127 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P07294 Protein traM n=54 Tax=root RepID=TRAM2_ECOLX 209 3e-53 UniRef50_D2U4M8 Conjugal transfer protein n=2 Tax=Arsenophonus n... 125 3e-28 UniRef50_P33788 Protein traM n=6 Tax=Enterobacteriaceae RepID=TR... 93 3e-18 UniRef50_A1JPQ4 Plasmid transfer protein n=1 Tax=Yersinia entero... 83 3e-15 UniRef50_A4SUM6 TraM protein n=1 Tax=Aeromonas salmonicida subsp... 67 2e-10 UniRef50_B6ICE7 Putative TraM protein n=1 Tax=Escherichia coli S... 50 3e-05 >UniRef50_P07294 Protein traM n=54 Tax=root RepID=TRAM2_ECOLX Length = 127 Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 99/127 (77%), Positives = 114/127 (89%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MAKV Y+S++ KIN I+E+RR EGA+ DVSFS+ ++MLLELGLRV+EAQMERKESA Sbjct: 1 MAKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMERKESA 60 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ EFNK+LLEC VKTQS+VAKILGIESLSPHVSGN KFEYANMVEDIR+KVSSEMERF Sbjct: 61 FNQAEFNKVLLECAVKTQSTVAKILGIESLSPHVSGNPKFEYANMVEDIRDKVSSEMERF 120 Query: 121 FPKNDDE 127 FP+ND+E Sbjct: 121 FPENDEE 127 >UniRef50_D2U4M8 Conjugal transfer protein n=2 Tax=Arsenophonus nasoniae RepID=D2U4M8_9ENTR Length = 124 Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 54/122 (44%), Positives = 89/122 (72%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MA++ +Y SND + +I I+ +++ EGA E ++S S+ +MLLELGLRV+EAQ ++++ Sbjct: 1 MARLQIYTSNDVFNRIVNIVNQQKNEGANETEISLSSVGTMLLELGLRVYEAQQNNEDNS 60 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ FNK++LE ++KT+ +V+ ILG++S SP++ G +EY MV +IR+ E+++F Sbjct: 61 FNQEAFNKVVLESLIKTKKAVSLILGMQSFSPYLEGKENYEYHKMVNEIRDAAKEEIKKF 120 Query: 121 FP 122 FP Sbjct: 121 FP 122 >UniRef50_P33788 Protein traM n=6 Tax=Enterobacteriaceae RepID=TRAM8_ECOLX Length = 127 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M K+ Y++N+ YE+I ++ R+QEG E S S +SMLLELGLRV+ Q E++E Sbjct: 1 MPKIQTYVNNNVYEQITDLVTIRKQEGIEE--ASLSNVSSMLLELGLRVYMIQQEKREGG 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ E+NKL+LE V + ++ +IL + L+ + F+YA + I + ++ F Sbjct: 59 FNQMEYNKLMLENVSRVRAMCTEILKMSVLNQESIASGNFDYAVIKPAIDKFAREQVSIF 118 Query: 121 FPKNDDE 127 FP ++D+ Sbjct: 119 FPDDEDD 125 >UniRef50_A1JPQ4 Plasmid transfer protein n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JPQ4_YERE8 Length = 131 Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M K+ Y++N ++ IN I+ +R+ EG DVS S+ +SMLLELGLRV+E Q E+KES Sbjct: 1 MPKIQTYVNNRVFDGINNIMTERQIEGM--PDVSISSVSSMLLELGLRVYELQKEKKESG 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ EF+K +LE K+ + + IL + + Y++++E +R +M+ Sbjct: 59 FNQREFDKTVLEMTSKSNALNSHILKLLCALAEKTEIQHESYSDILEKVRAYSQQKMDSL 118 Query: 121 FPKNDDE 127 F + DE Sbjct: 119 FSEVSDE 125 >UniRef50_A4SUM6 TraM protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUM6_AERS4 Length = 122 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 9/128 (7%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M +V +Y+ ++ ++I+ ++E+ Q GA +VSFS+ A MLLELGLRV+ + R E A Sbjct: 1 MPRVQVYLKHNCIDEIHELVEEDIQAGANPAEVSFSSKACMLLELGLRVY--NLRRSEHA 58 Query: 61 FN-QTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMER 119 + +F+++LL Q+ + + + L+ + K E + I KV+ +ME Sbjct: 59 GSGHDDFDRVLL------QTCLESMFLSQHLTAKLGNMEKGEKELLRVSIDRKVAEKMEP 112 Query: 120 FFPKNDDE 127 FFP DDE Sbjct: 113 FFPATDDE 120 >UniRef50_B6ICE7 Putative TraM protein n=1 Tax=Escherichia coli SE11 RepID=B6ICE7_ECOSE Length = 124 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%) Query: 16 INAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEA-----QMERKESAFNQTE-FNKL 69 I ++++R EGA DV+ S+ S LLE GLRV + Q E K E F K Sbjct: 9 IRQLVDERLAEGATPADVNMSSVCSELLETGLRVVQQLKKREQEEEKNGGLTDEELFRKR 68 Query: 70 LLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERFFPKND 125 LLE +K++ + IL + +S+ Y M+ ++++ ++ FFP+ + Sbjct: 69 LLEECMKSRLTTQAILNCMFDLTEIKSDSRHNYHEMISKFKKEIRESLQEFFPEKE 124 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P07294 Protein traM n=54 Tax=root RepID=TRAM2_ECOLX 153 2e-36 UniRef50_D2U4M8 Conjugal transfer protein n=2 Tax=Arsenophonus n... 141 8e-33 UniRef50_P33788 Protein traM n=6 Tax=Enterobacteriaceae RepID=TR... 140 1e-32 UniRef50_A1JPQ4 Plasmid transfer protein n=1 Tax=Yersinia entero... 134 7e-31 UniRef50_A4SUM6 TraM protein n=1 Tax=Aeromonas salmonicida subsp... 131 6e-30 UniRef50_B6ICE7 Putative TraM protein n=1 Tax=Escherichia coli S... 107 1e-22 Sequences not found previously or not previously below threshold: UniRef50_A4WGR8 Putative uncharacterized protein n=1 Tax=Enterob... 50 2e-05 UniRef50_C8QE94 Putative uncharacterized protein n=2 Tax=Pantoea... 44 0.001 >UniRef50_P07294 Protein traM n=54 Tax=root RepID=TRAM2_ECOLX Length = 127 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 99/127 (77%), Positives = 114/127 (89%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MAKV Y+S++ KIN I+E+RR EGA+ DVSFS+ ++MLLELGLRV+EAQMERKESA Sbjct: 1 MAKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMERKESA 60 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ EFNK+LLEC VKTQS+VAKILGIESLSPHVSGN KFEYANMVEDIR+KVSSEMERF Sbjct: 61 FNQAEFNKVLLECAVKTQSTVAKILGIESLSPHVSGNPKFEYANMVEDIRDKVSSEMERF 120 Query: 121 FPKNDDE 127 FP+ND+E Sbjct: 121 FPENDEE 127 >UniRef50_D2U4M8 Conjugal transfer protein n=2 Tax=Arsenophonus nasoniae RepID=D2U4M8_9ENTR Length = 124 Score = 141 bits (355), Expect = 8e-33, Method: Composition-based stats. Identities = 54/124 (43%), Positives = 90/124 (72%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MA++ +Y SND + +I I+ +++ EGA E ++S S+ +MLLELGLRV+EAQ ++++ Sbjct: 1 MARLQIYTSNDVFNRIVNIVNQQKNEGANETEISLSSVGTMLLELGLRVYEAQQNNEDNS 60 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ FNK++LE ++KT+ +V+ ILG++S SP++ G +EY MV +IR+ E+++F Sbjct: 61 FNQEAFNKVVLESLIKTKKAVSLILGMQSFSPYLEGKENYEYHKMVNEIRDAAKEEIKKF 120 Query: 121 FPKN 124 FP + Sbjct: 121 FPDD 124 >UniRef50_P33788 Protein traM n=6 Tax=Enterobacteriaceae RepID=TRAM8_ECOLX Length = 127 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M K+ Y++N+ YE+I ++ R+QEG E S S +SMLLELGLRV+ Q E++E Sbjct: 1 MPKIQTYVNNNVYEQITDLVTIRKQEGIEEA--SLSNVSSMLLELGLRVYMIQQEKREGG 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ E+NKL+LE V + ++ +IL + L+ + F+YA + I + ++ F Sbjct: 59 FNQMEYNKLMLENVSRVRAMCTEILKMSVLNQESIASGNFDYAVIKPAIDKFAREQVSIF 118 Query: 121 FPKNDDE 127 FP ++D+ Sbjct: 119 FPDDEDD 125 >UniRef50_A1JPQ4 Plasmid transfer protein n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JPQ4_YERE8 Length = 131 Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M K+ Y++N ++ IN I+ +R+ EG DVS S+ +SMLLELGLRV+E Q E+KES Sbjct: 1 MPKIQTYVNNRVFDGINNIMTERQIEGM--PDVSISSVSSMLLELGLRVYELQKEKKESG 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ EF+K +LE K+ + + IL + + Y++++E +R +M+ Sbjct: 59 FNQREFDKTVLEMTSKSNALNSHILKLLCALAEKTEIQHESYSDILEKVRAYSQQKMDSL 118 Query: 121 FPKNDDE 127 F + DE Sbjct: 119 FSEVSDE 125 >UniRef50_A4SUM6 TraM protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUM6_AERS4 Length = 122 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 9/128 (7%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M +V +Y+ ++ ++I+ ++E+ Q GA +VSFS+ A MLLELGLRV+ + R E A Sbjct: 1 MPRVQVYLKHNCIDEIHELVEEDIQAGANPAEVSFSSKACMLLELGLRVY--NLRRSEHA 58 Query: 61 FN-QTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMER 119 + +F+++LL Q+ + + + L+ + K E + I KV+ +ME Sbjct: 59 GSGHDDFDRVLL------QTCLESMFLSQHLTAKLGNMEKGEKELLRVSIDRKVAEKMEP 112 Query: 120 FFPKNDDE 127 FFP DDE Sbjct: 113 FFPATDDE 120 >UniRef50_B6ICE7 Putative TraM protein n=1 Tax=Escherichia coli SE11 RepID=B6ICE7_ECOSE Length = 124 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 8 ISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEA-----QMERKESAFN 62 + + I ++++R EGA DV+ S+ S LLE GLRV + Q E K Sbjct: 1 MKQKTLDGIRQLVDERLAEGATPADVNMSSVCSELLETGLRVVQQLKKREQEEEKNGGLT 60 Query: 63 QTE-FNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERFF 121 E F K LLE +K++ + IL + +S+ Y M+ ++++ ++ FF Sbjct: 61 DEELFRKRLLEECMKSRLTTQAILNCMFDLTEIKSDSRHNYHEMISKFKKEIRESLQEFF 120 Query: 122 PKND 125 P+ + Sbjct: 121 PEKE 124 >UniRef50_A4WGR8 Putative uncharacterized protein n=1 Tax=Enterobacter sp. 638 RepID=A4WGR8_ENT38 Length = 128 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M + N+Y + +I I+E Q+GA D+++S+ + L+ LGL V++++ E S Sbjct: 1 MPRKNIYFKDKIDREIQDILEIEIQKGATTSDMNYSSIVNELVRLGLMVYKSKEEG--ST 58 Query: 61 FNQTEFNKLLLECVVKTQ 78 F+ F + L++ V ++ Sbjct: 59 FDLDGFRRDLIKKVSGSR 76 >UniRef50_C8QE94 Putative uncharacterized protein n=2 Tax=Pantoea sp. At-9b RepID=C8QE94_9ENTR Length = 130 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MA+ N+Y ++ +++ Q GA DV+FS+ + L+ +GL V + Q E + Sbjct: 1 MARRNIYFKEKTEREVQELVQIEIQNGATHGDVNFSSVVNELVGIGLMVKKHQGE--GNK 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIES 89 F+ FN+ L+ V ++ ++ ++ + S Sbjct: 59 FDMEGFNRDLIRRVSGSREGISIMMAMLS 87 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P07294 Protein traM n=54 Tax=root RepID=TRAM2_ECOLX 149 3e-35 UniRef50_D2U4M8 Conjugal transfer protein n=2 Tax=Arsenophonus n... 137 9e-32 UniRef50_P33788 Protein traM n=6 Tax=Enterobacteriaceae RepID=TR... 133 2e-30 UniRef50_A4SUM6 TraM protein n=1 Tax=Aeromonas salmonicida subsp... 128 6e-29 UniRef50_A1JPQ4 Plasmid transfer protein n=1 Tax=Yersinia entero... 125 6e-28 UniRef50_B6ICE7 Putative TraM protein n=1 Tax=Escherichia coli S... 106 3e-22 UniRef50_A4WGR8 Putative uncharacterized protein n=1 Tax=Enterob... 92 7e-18 UniRef50_C8QE94 Putative uncharacterized protein n=2 Tax=Pantoea... 91 8e-18 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P07294 Protein traM n=54 Tax=root RepID=TRAM2_ECOLX Length = 127 Score = 149 bits (375), Expect = 3e-35, Method: Composition-based stats. Identities = 99/127 (77%), Positives = 114/127 (89%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MAKV Y+S++ KIN I+E+RR EGA+ DVSFS+ ++MLLELGLRV+EAQMERKESA Sbjct: 1 MAKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMERKESA 60 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ EFNK+LLEC VKTQS+VAKILGIESLSPHVSGN KFEYANMVEDIR+KVSSEMERF Sbjct: 61 FNQAEFNKVLLECAVKTQSTVAKILGIESLSPHVSGNPKFEYANMVEDIRDKVSSEMERF 120 Query: 121 FPKNDDE 127 FP+ND+E Sbjct: 121 FPENDEE 127 >UniRef50_D2U4M8 Conjugal transfer protein n=2 Tax=Arsenophonus nasoniae RepID=D2U4M8_9ENTR Length = 124 Score = 137 bits (345), Expect = 9e-32, Method: Composition-based stats. Identities = 54/124 (43%), Positives = 90/124 (72%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MA++ +Y SND + +I I+ +++ EGA E ++S S+ +MLLELGLRV+EAQ ++++ Sbjct: 1 MARLQIYTSNDVFNRIVNIVNQQKNEGANETEISLSSVGTMLLELGLRVYEAQQNNEDNS 60 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ FNK++LE ++KT+ +V+ ILG++S SP++ G +EY MV +IR+ E+++F Sbjct: 61 FNQEAFNKVVLESLIKTKKAVSLILGMQSFSPYLEGKENYEYHKMVNEIRDAAKEEIKKF 120 Query: 121 FPKN 124 FP + Sbjct: 121 FPDD 124 >UniRef50_P33788 Protein traM n=6 Tax=Enterobacteriaceae RepID=TRAM8_ECOLX Length = 127 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M K+ Y++N+ YE+I ++ R+QEG E S S +SMLLELGLRV+ Q E++E Sbjct: 1 MPKIQTYVNNNVYEQITDLVTIRKQEGIEEA--SLSNVSSMLLELGLRVYMIQQEKREGG 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ E+NKL+LE V + ++ +IL + L+ + F+YA + I + ++ F Sbjct: 59 FNQMEYNKLMLENVSRVRAMCTEILKMSVLNQESIASGNFDYAVIKPAIDKFAREQVSIF 118 Query: 121 FPKNDDE 127 FP ++D+ Sbjct: 119 FPDDEDD 125 >UniRef50_A4SUM6 TraM protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUM6_AERS4 Length = 122 Score = 128 bits (321), Expect = 6e-29, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 9/128 (7%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M +V +Y+ ++ ++I+ ++E+ Q GA +VSFS+ A MLLELGLRV+ + R E A Sbjct: 1 MPRVQVYLKHNCIDEIHELVEEDIQAGANPAEVSFSSKACMLLELGLRVY--NLRRSEHA 58 Query: 61 FN-QTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMER 119 + +F+++LL Q+ + + + L+ + K E + I KV+ +ME Sbjct: 59 GSGHDDFDRVLL------QTCLESMFLSQHLTAKLGNMEKGEKELLRVSIDRKVAEKMEP 112 Query: 120 FFPKNDDE 127 FFP DDE Sbjct: 113 FFPATDDE 120 >UniRef50_A1JPQ4 Plasmid transfer protein n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JPQ4_YERE8 Length = 131 Score = 125 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M K+ Y++N ++ IN I+ +R+ EG DVS S+ +SMLLELGLRV+E Q E+KES Sbjct: 1 MPKIQTYVNNRVFDGINNIMTERQIEGM--PDVSISSVSSMLLELGLRVYELQKEKKESG 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERF 120 FNQ EF+K +LE K+ + + IL + + Y++++E +R +M+ Sbjct: 59 FNQREFDKTVLEMTSKSNALNSHILKLLCALAEKTEIQHESYSDILEKVRAYSQQKMDSL 118 Query: 121 FPKNDDE 127 F + DE Sbjct: 119 FSEVSDE 125 >UniRef50_B6ICE7 Putative TraM protein n=1 Tax=Escherichia coli SE11 RepID=B6ICE7_ECOSE Length = 124 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 8 ISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEA-----QMERKESAFN 62 + + I ++++R EGA DV+ S+ S LLE GLRV + Q E K Sbjct: 1 MKQKTLDGIRQLVDERLAEGATPADVNMSSVCSELLETGLRVVQQLKKREQEEEKNGGLT 60 Query: 63 QTE-FNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERFF 121 E F K LLE +K++ + IL + +S+ Y M+ ++++ ++ FF Sbjct: 61 DEELFRKRLLEECMKSRLTTQAILNCMFDLTEIKSDSRHNYHEMISKFKKEIRESLQEFF 120 Query: 122 PKND 125 P+ + Sbjct: 121 PEKE 124 >UniRef50_A4WGR8 Putative uncharacterized protein n=1 Tax=Enterobacter sp. 638 RepID=A4WGR8_ENT38 Length = 128 Score = 91.7 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 M + N+Y + +I I+E Q+GA D+++S+ + L+ LGL V++++ E S Sbjct: 1 MPRKNIYFKDKIDREIQDILEIEIQKGATTSDMNYSSIVNELVRLGLMVYKSKEE--GST 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIES 89 F+ F + L++ V ++ + + + S Sbjct: 59 FDLDGFRRDLIKKVSGSREGMMILTALVS 87 >UniRef50_C8QE94 Putative uncharacterized protein n=2 Tax=Pantoea sp. At-9b RepID=C8QE94_9ENTR Length = 130 Score = 91.3 bits (225), Expect = 8e-18, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 1 MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHEAQMERKESA 60 MA+ N+Y ++ +++ Q GA DV+FS+ + L+ +GL V + Q E + Sbjct: 1 MARRNIYFKEKTEREVQELVQIEIQNGATHGDVNFSSVVNELVGIGLMVKKHQGE--GNK 58 Query: 61 FNQTEFNKLLLECVVKTQSSVAKILGIES 89 F+ FN+ L+ V ++ ++ ++ + S Sbjct: 59 FDMEGFNRDLIRRVSGSREGISIMMAMLS 87 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.128 0.293 Lambda K H 0.267 0.0391 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 489,628,508 Number of Sequences: 3077464 Number of extensions: 12691783 Number of successful extensions: 40441 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 21 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 40406 Number of HSP's gapped (non-prelim): 25 length of query: 127 length of database: 1,040,396,356 effective HSP length: 93 effective length of query: 34 effective length of database: 754,192,204 effective search space: 25642534936 effective search space used: 25642534936 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 87 (38.2 bits)