Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Y	K	H	I	G	V	A	I	S	G	N	E	E	D	A	L	L	V	N	K	A	L	E	L	A	R	H	N	D	A	H	L	T	L	I	H	I	D	D	G	L	S	E	L	Y	P	G	I	Y	F	P	A	T	E	D	I	L	Q
Secondary structure
SS confidence
Disorder		?	?	?																																									?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	K	N	K	S	D	N	K	L	Y	K	L	T	K	N	I	Q	W	P	K	T	K	L	R	I	E	R	G	E	M	P	E	T	L	L	E	I	M	Q	K	E	Q	C	D	L	L	V	C	G	H	H	H	S	F	I	N	R	L	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Sequence		P	A	Y	R	G	M	I	N	K	M	S	A	D	L	L	I	V	P	F	I	D	K
Secondary structure
SS confidence
Disorder																				?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jmv chain A Region: 3 - 141 Aligned: 139 Modelled: 139 Confidence: 99.9% Identity: 32% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 2z3v chain A domain 1 Region: 3 - 137 Aligned: 132 Modelled: 135 Confidence: 99.9% Identity: 20% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3hgm chain D Region: 3 - 137 Aligned: 135 Modelled: 135 Confidence: 99.9% Identity: 17% PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata Phyre2 PDB 1mjh chain A Region: 1 - 141 Aligned: 139 Modelled: 141 Confidence: 99.9% Identity: 19% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 2dum chain D Region: 3 - 142 Aligned: 139 Modelled: 140 Confidence: 99.9% Identity: 12% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 Phyre2 PDB 3s3t chain D Region: 2 - 138 Aligned: 137 Modelled: 137 Confidence: 99.9% Identity: 15% PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum Phyre2 PDB 2pfs chain A Region: 3 - 138 Aligned: 121 Modelled: 136 Confidence: 99.9% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea Phyre2 PDB 3dlo chain C Region: 3 - 138 Aligned: 128 Modelled: 126 Confidence: 99.9% Identity: 16% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus Phyre2 PDB 3fg9 chain B Region: 1 - 138 Aligned: 131 Modelled: 138 Confidence: 99.9% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 Phyre2 PDB 1tq8 chain A Region: 2 - 138 Aligned: 119 Modelled: 119 Confidence: 99.9% Identity: 21% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 2gm3 chain A domain 1 Region: 4 - 139 Aligned: 131 Modelled: 132 Confidence: 99.8% Identity: 11% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3fh0 chain A Region: 2 - 138 Aligned: 123 Modelled: 137 Confidence: 99.8% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase Phyre2 PDB 1q77 chain A Region: 2 - 138 Aligned: 131 Modelled: 135 Confidence: 99.8% Identity: 15% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3loq chain A Region: 2 - 142 Aligned: 122 Modelled: 122 Confidence: 99.8% Identity: 13% PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 Phyre2 PDB 3olq chain A Region: 3 - 142 Aligned: 140 Modelled: 140 Confidence: 99.7% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 Phyre2 PDB 3mt0 chain A Region: 2 - 141 Aligned: 122 Modelled: 122 Confidence: 99.7% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 Phyre2 PDB 3idf chain A Region: 4 - 138 Aligned: 135 Modelled: 135 Confidence: 99.7% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a Phyre2 PDB 2jax chain A Region: 2 - 138 Aligned: 133 Modelled: 137 Confidence: 99.7% Identity: 11% PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis Phyre2 PDB 3ab8 chain B Region: 2 - 138 Aligned: 116 Modelled: 117 Confidence: 99.7% Identity: 12% PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. Phyre2 PDB 3a2k chain B Region: 4 - 112 Aligned: 94 Modelled: 94 Confidence: 91.3% Identity: 18% PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna Phyre2 1 d1jmva_ 2 d2z3va1 3 c3hgmD_ 4 d1mjha_ 5 c2dumD_ 6 c3s3tD_ 7 c2pfsA_ 8 c3dloC_ 9 c3fg9B_ 10 d1tq8a_ 11 d2gm3a1 12 c3fh0A_ 13 d1q77a_ 14 c3loqA_ 15 c3olqA_ 16 c3mt0A_ 17 c3idfA_ 18 c2jaxA_ 19 c3ab8B_ 20 c3a2kB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jmva_ 99.9 32 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 2 d2z3va1 99.9 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 3 c3hgmD_ 99.9 17 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 4 d1mjha_ 99.9 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 5 c2dumD_ 99.9 12 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 6 c3s3tD_ 99.9 15 PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum 7 c2pfsA_ 99.9 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 8 c3dloC_ 99.9 16 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus 9 c3fg9B_ 99.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 10 d1tq8a_ 99.9 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 11 d2gm3a1 99.8 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 12 c3fh0A_ 99.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase 13 d1q77a_ 99.8 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 14 c3loqA_ 99.8 13 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 15 c3olqA_ 99.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 16 c3mt0A_ 99.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 17 c3idfA_ 99.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a 18 c2jaxA_ 99.7 11 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis 19 c3ab8B_ 99.7 12 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. 20 c3a2kB_ 91.3 18 PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna 21 d1np7a2 not modelled 87.9 11 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 22 d1g5qa_ not modelled 86.0 15 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 23 c2e21A_ not modelled 85.0 20 PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. 24 c1vl2C_ not modelled 80.7 16 PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution 25 d1vbka1 not modelled 77.6 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 26 c3tvsA_ not modelled 75.0 11 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome 27 c1kh2D_ not modelled 74.7 16 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 28 c3qjgD_ not modelled 74.4 14 PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus 29 d3clsc1 not modelled 72.8 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 30 c3lqkA_ not modelled 71.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 31 d1o94c_ not modelled 69.2 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 32 c1np7A_ not modelled 68.8 11 PDB header:lyase Chain: A: PDB Molecule:dna photolyase; PDBTitle: crystal structure analysis of synechocystis sp. pcc6803 cryptochrome 33 c2xrzA_ not modelled 67.0 12 PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion 34 c2pjuD_ not modelled 65.6 8 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 35 d1j20a1 not modelled 64.5 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 36 d1wy5a1 not modelled 63.3 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 37 c1k97A_ not modelled 62.3 14 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 38 c1o94D_ not modelled 61.5 11 PDB header:electron transport Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein 39 c2nz2A_ not modelled 57.8 14 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline 40 c3fy4C_ not modelled 57.2 15 PDB header:lyase Chain: C: PDB Molecule:6-4 photolyase; PDBTitle: (6-4) photolyase crystal structure 41 d2pjua1 not modelled 57.0 8 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 42 d1owla2 not modelled 54.2 12 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 43 d1efpb_ not modelled 53.4 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 44 c1ni5A_ not modelled 50.6 25 PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli 45 d1uf3a_ not modelled 50.5 15 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 46 c3qg5D_ not modelled 49.3 16 PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair 47 c1w2wJ_ not modelled 47.5 9 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 48 c2q8uA_ not modelled 47.0 14 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease, putative; PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution 49 c3mcuF_ not modelled 46.8 22 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 50 d1iv0a_ not modelled 44.6 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 51 d3bzka5 not modelled 42.2 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 52 d1gsoa2 not modelled 40.7 39 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 53 c2ejbA_ not modelled 39.8 18 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 54 c1tezB_ not modelled 39.8 12 PDB header:lyase/dna Chain: B: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: complex between dna and the dna photolyase from anacystis nidulans 55 c3zquA_ not modelled 39.7 12 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 56 d1p3y1_ not modelled 39.2 11 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 57 d1nu0a_ not modelled 37.9 9 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 58 d3clsd1 not modelled 36.9 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 59 c3bl5E_ not modelled 36.4 9 PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis 60 c3ih5A_ not modelled 35.9 19 PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron 61 c3t1iC_ not modelled 35.4 16 PDB header:hydrolase Chain: C: PDB Molecule:double-strand break repair protein mre11a; PDBTitle: crystal structure of human mre11: understanding tumorigenic mutations 62 d1vhxa_ not modelled 34.8 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 63 c2xmoB_ not modelled 34.2 17 PDB header:hydrolase Chain: B: PDB Molecule:lmo2642 protein; PDBTitle: the crystal structure of lmo2642 64 d1sbza_ not modelled 34.1 18 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 65 d2c5sa1 not modelled 34.1 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 66 c3op1A_ not modelled 33.6 12 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 67 d1ii7a_ not modelled 33.3 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 68 c1mvlA_ not modelled 33.3 16 PDB header:lyase Chain: A: PDB Molecule:ppc decarboxylase athal3a; PDBTitle: ppc decarboxylase mutant c175s 69 d1mvla_ not modelled 33.3 16 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 70 d1fmfa_ not modelled 32.1 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 71 c3auzA_ not modelled 32.1 8 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese 72 c3umvB_ not modelled 31.0 16 PDB header:lyase Chain: B: PDB Molecule:deoxyribodipyrimidine photo-lyase; PDBTitle: eukaryotic class ii cpd photolyase structure reveals a basis for2 improved uv-tolerance in plants 73 d1ni5a1 not modelled 30.2 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 74 d1zuna1 not modelled 29.9 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 75 d1efvb_ not modelled 29.6 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 76 c3uhjE_ not modelled 29.5 21 PDB header:oxidoreductase Chain: E: PDB Molecule:probable glycerol dehydrogenase; PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021 77 c2qf7A_ not modelled 29.0 12 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli 78 d2dbsa1 not modelled 28.2 17 Fold:TTHC002-like Superfamily:TTHC002-like Family:TTHC002-like 79 c3r8wC_ not modelled 27.6 24 PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution 80 c3av0A_ not modelled 26.2 12 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 81 d3bula2 not modelled 25.9 20 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 82 c3nhzA_ not modelled 25.7 12 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 83 d1e0ta3 not modelled 25.6 17 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 84 c3cvyA_ not modelled 25.2 10 PDB header:lyase/dna Chain: A: PDB Molecule:re11660p; PDBTitle: drosophila melanogaster (6-4) photolyase bound to repaired2 ds dna 85 c2q5cA_ not modelled 24.9 11 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 86 d1v53a1 not modelled 24.6 28 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 87 d1s3la_ not modelled 24.4 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 88 c1s3mA_ not modelled 24.4 16 PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase 89 c2jbvA_ not modelled 24.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:choline oxidase; PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism 90 c2j4dA_ not modelled 23.9 17 PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana 91 d1t6t1_ not modelled 23.1 9 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 92 c3jzdA_ not modelled 22.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 93 d1gvfa_ not modelled 22.5 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 94 d1pkla3 not modelled 22.3 7 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 95 c3psfA_ not modelled 21.7 15 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 96 c1zunA_ not modelled 21.3 12 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae 97 c2yxbA_ not modelled 21.2 9 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 98 d1nuia1 not modelled 20.9 11 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 99 c3u9sE_ not modelled 20.8 13 PDB header:ligase Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex 100 d1cnza_ not modelled 20.7 28 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 101 d1vl2a1 not modelled 20.4 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 102 c3u1hA_ not modelled 20.4 32 PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus 103 d1cm7a_ not modelled 20.3 28 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 104 d1t9ka_ not modelled 20.2 9 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 105 d1xaca_ not modelled 20.2 24 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0