232 d2hoxa1 Probab=99.08   E-value=1.3e-07  Score=69.02  Aligned_columns=275  Identities=13%

Q ss_pred             HHHHHHHHHHHCC-------CCCEEEECCCCHHHHHHHHHHCCCCCE--------EEEECCHHHHHHHHHHHHCCCEEEE
Q ss_conf             9999999998298-------840998557107999999983489989--------9991712499999999967986999
Q batch____       177 CIAQQHAAKVFNA-------DKTYFVLNGTSSSNKVVLNALLTPGDL--------VLFDRNNHKSNHHGALLQAGATPVY  241 (732)
Q Consensus       177 ~eAq~laA~~fGA-------~~T~FlvNGST~gn~a~i~a~~~~Gd~--------VLv~RNcHKSV~~gAl~Lsga~Pvy  241 (732)
                      .+-++..+++++.       ++-.-++||+|.++.+++.++++|||.        |++..-+.-...+ ++.+.|...+.
T Consensus       103 ~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~-~~~~~~~~~~~  181 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE-QTKYFDKKGYV  181 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH-HHHHSCCTTEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHH-HHHHCCCCCCC
T ss_conf             89999999998850886788776999468899999999986488861235677435730023778999-99855997444


Q ss_pred             EECCCCCCCCCCCCCHHHCCHHHHHHHHHHCHHHHHCCCCCCCEEEEECC-CHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             30775633434677832289999999987370133202347537999888-72622775999999998529839998875
Q batch____       242 LETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCDYILFDSAW  320 (732)
Q Consensus       242 l~P~~~~~g~ig~i~~~~it~e~i~~~l~~~p~aka~~~~~~~~vvlTsP-TY~Gv~~Di~~Ia~~~h~~~~~LlVDEAH  320 (732)
                      +..+.+                          ...+......++++++|| |--|.+.+       |.+++..+++||++
T Consensus       182 ~~~d~~--------------------------~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y  228 (425)
T d2hoxa1         182 WAGNAA--------------------------NYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVY  228 (425)
T ss_dssp             EEEEGG--------------------------GGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTT
T ss_pred             CCCCHH--------------------------HHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCC
T ss_conf             247988--------------------------999724888579998178888560654-------23239689971432


Q ss_pred             CHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCCHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf             10002573465667543113865574599860000013-54701024632776444201479899999998755887138
Q batch____       321 VGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQA-GFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFY  399 (732)
Q Consensus       321 GAH~~FhP~~~~~~~~al~~gAD~~~iivvqStHKtLp-aLTQtA~LHv~~~~~~~~~~~vd~~rl~~al~m~qSTSPSY  399 (732)
                              ......+.......+    +++.|.=|+++ +=....|+.+.+.         +.-..-..+..+.+.++|-
T Consensus       229 --------~~~~~~~~~~~~~~~----i~~~S~SK~~g~~GlRiG~~i~~~~---------~i~~~l~~~~~~~~~~~s~  287 (425)
T d2hoxa1         229 --------YWPHYTPIKYKADED----ILLFTMSKFTGHSGSRFGWALIKDE---------SVYNNLLNYMTKNTEGTPR  287 (425)
T ss_dssp             --------CSTTTSCCCSCBCCS----EEEEEHHHHTSCGGGCCEEEEECCH---------HHHHHHHHHHHHHTSSCCH
T ss_pred             --------CCCCCCCCCCCCCCE----EEEEECCCCCCCCCCCEEEEEECCH---------HHHHHHHHHHHCCCCCCCH
T ss_conf             --------343323333456854----9998155101233231018996898---------9999999864105777368


Q ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHCCCCCCCCCCC
Q ss_conf             9-------99999999999861202899999999999999999741113-----------------32100001344443
Q batch____       400 P-------LFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQH-----------------IRPFVPELVDGKPW  455 (732)
Q Consensus       400 l-------LmASLD~Ar~~l~~e~G~~l~~~~i~~a~~~R~~i~~~~~~-----------------~~~~~~~~~~~~~~  455 (732)
                      +       +|.+..........+ ++++++...+...+-|+.+.+....                 +....+.       
T Consensus       288 ~~Q~aA~~~L~~~~~~~~~~~~~-~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~-------  359 (425)
T d2hoxa1         288 ETQLRSLKVLKEVVAMVKTQKGT-MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPP-------  359 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS-TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECC-------
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-------
T ss_conf             99999999960201345655554-8999999999999999999999863576300345655432210013778-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECC
Q ss_conf             33442111222333345554333344445567422376079998257666655322028899999999998297966358
Q batch____       456 QSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCD  535 (732)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~~DP~Ki~I~t~g~~~~~g~~~~~GisG~~l~~~L~e~gI~~E~a~  535 (732)
                                                          -..-+.+.++.-            +...+.++|+++||.+-=.+
T Consensus       360 ------------------------------------~~~f~w~~~~~~------------~~~~~~~lL~e~GI~v~pGs  391 (425)
T d2hoxa1         360 ------------------------------------SPSYAWVKCEWE------------EDKDCYQTFQNGRINTQNGV  391 (425)
T ss_dssp             ------------------------------------CCSEEEEEECSG------------GGCSHHHHHHHTTEECEEGG
T ss_pred             ------------------------------------CCCEEEEECCCC------------CHHHHHHHHHHCCEEEECCC
T ss_conf             ------------------------------------761699867898------------08999999996694997170


Q ss_pred             CCEE---EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             9769---99966888999999999999999
Q batch____       536 LNSI---LFLLTPAEDMAKLQQLVALLVRF  562 (732)
Q Consensus       536 ~~~v---L~l~s~g~t~~d~~~L~~aL~~i  562 (732)
                      .+..   .+=+|++.++++++.+++.|.++
T Consensus       392 ~FG~~~~~vRiSl~~~~e~ld~~l~rL~~~  421 (425)
T d2hoxa1         392 GFEASSRYVRLSLIKTQDDFDQLMYYLKDM  421 (425)
T ss_dssp             GGTSCTTEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             238988659999139989999999999998