Secondary structure and disorder prediction

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Sequence

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Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vog chain B Region: 3 - 8 Aligned: 6 Modelled: 6 Confidence: 40.5% Identity: 100% PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-modifying factor; PDBTitle: structure of mouse a1 bound to the bmf bh3-domain Phyre2 PDB 2fz0 chain A Region: 3 - 11 Aligned: 9 Modelled: 9 Confidence: 22.3% Identity: 67% PDB header:membrane protein Chain: A: PDB Molecule:v-snare component of the vacuolar snare complex PDBTitle: identification of yeast r-snare nyv1p as a novel longin2 domain protein Phyre2 PDB 1xeq chain A domain 1 Region: 15 - 24 Aligned: 10 Modelled: 10 Confidence: 7.7% Identity: 70% Fold: S15/NS1 RNA-binding domain Superfamily: S15/NS1 RNA-binding domain Family: N-terminal, RNA-binding domain of nonstructural protein NS1 Phyre2 1 c2vogB_ 2 c2fz0A_ 3 d1xeqa1

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vogB_ 40.5 100 PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-modifying factor; PDBTitle: structure of mouse a1 bound to the bmf bh3-domain 2 c2fz0A_ 22.3 67 PDB header:membrane protein Chain: A: PDB Molecule:v-snare component of the vacuolar snare complex PDBTitle: identification of yeast r-snare nyv1p as a novel longin2 domain protein 3 d1xeqa1 7.7 70 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:N-terminal, RNA-binding domain of nonstructural protein NS1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0