Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	L	P	L	V	A	A	A	T	A	A	F	L	V	V	A	C	S	S	P	T	P	P	R	G	V	T	V	V	N	N	F	D	A	K	R	Y	L	G	T	W	Y	E	I	A	R	F	D	H	R	F	E	R	G	L	E	K	V
Secondary structure
SS confidence
Disorder		?	?															?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	A	T	Y	S	L	R	D	D	G	G	L	N	V	I	N	K	G	Y	N	P	D	R	G	M	W	Q	Q	S	E	G	K	A	Y	F	T	G	A	P	T	R	A	A	L	K	V	S	F	F	G	P	F	Y	G	G	Y	N	V	I	A
Secondary structure
SS confidence
Disorder																									?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Sequence		L	D	R	E	Y	R	H	A	L	V	C	G	P	D	R	D	Y	L	W	I	L	S	R	T	P	T	I	S	D	E	V	K	Q	E	M	L	A	V	A	T	R	E	G	F	D	V	S	K	F	I	W	V	Q	Q	P	G	S
Secondary structure
SS confidence
Disorder																												?																									?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qwd chain A Region: 18 - 176 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 98% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 3cqr chain B Region: 24 - 176 Aligned: 152 Modelled: 153 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast; PDBTitle: crystal structure of the lipocalin domain of violaxanthin2 de-epoxidase (vde) at ph5 Phyre2 PDB 1jyd chain A Region: 20 - 176 Aligned: 156 Modelled: 157 Confidence: 100.0% Identity: 19% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 3fmz chain B Region: 20 - 176 Aligned: 156 Modelled: 157 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: B: PDB Molecule:retinol-binding protein 4; PDBTitle: crystal structure of retinol-binding protein 4 (rbp4) in2 complex with non-retinoid ligand Phyre2 PDB 1bbp chain A Region: 22 - 175 Aligned: 151 Modelled: 152 Confidence: 100.0% Identity: 23% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1kt7 chain A Region: 20 - 176 Aligned: 156 Modelled: 157 Confidence: 100.0% Identity: 21% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1iiu chain A Region: 22 - 177 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 22% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1gka chain B Region: 22 - 176 Aligned: 155 Modelled: 155 Confidence: 100.0% Identity: 21% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 3ebw chain A Region: 22 - 176 Aligned: 148 Modelled: 146 Confidence: 100.0% Identity: 21% PDB header:allergen Chain: A: PDB Molecule:per a 4 allergen; PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches Phyre2 PDB 1n0s chain A Region: 22 - 175 Aligned: 151 Modelled: 152 Confidence: 100.0% Identity: 24% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1i4u chain A Region: 22 - 176 Aligned: 152 Modelled: 155 Confidence: 100.0% Identity: 20% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 2hzq chain A Region: 23 - 176 Aligned: 152 Modelled: 154 Confidence: 100.0% Identity: 30% PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone Phyre2 PDB 1z24 chain A domain 1 Region: 22 - 176 Aligned: 155 Modelled: 155 Confidence: 100.0% Identity: 22% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1kxo chain A Region: 22 - 176 Aligned: 152 Modelled: 155 Confidence: 100.0% Identity: 23% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1x71 chain A domain 1 Region: 18 - 176 Aligned: 157 Modelled: 157 Confidence: 100.0% Identity: 15% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1qab chain E Region: 23 - 177 Aligned: 154 Modelled: 155 Confidence: 100.0% Identity: 20% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 2l5p chain A Region: 19 - 176 Aligned: 156 Modelled: 158 Confidence: 100.0% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis Phyre2 PDB 2k23 chain A Region: 16 - 176 Aligned: 159 Modelled: 159 Confidence: 99.9% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 Phyre2 PDB 3by0 chain B Region: 17 - 176 Aligned: 155 Modelled: 160 Confidence: 99.9% Identity: 13% PDB header:ligand binding protein Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin; PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin Phyre2 PDB 1lf7 chain A Region: 22 - 176 Aligned: 148 Modelled: 153 Confidence: 99.9% Identity: 16% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 1 d1qwda_ 2 c3cqrB_ 3 d1jyda_ 4 c3fmzB_ 5 d1bbpa_ 6 d1kt7a_ 7 d1iiua_ 8 d1gkab_ 9 c3ebwA_ 10 d1n0sa_ 11 d1i4ua_ 12 c2hzqA_ 13 d1z24a1 14 d1kxoa_ 15 d1x71a1 16 d1qabe_ 17 c2l5pA_ 18 c2k23A_ 19 c3by0B_ 20 d1lf7a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qwda_ 100.0 98 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 2 c3cqrB_ 100.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast; PDBTitle: crystal structure of the lipocalin domain of violaxanthin2 de-epoxidase (vde) at ph5 3 d1jyda_ 100.0 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 4 c3fmzB_ 100.0 19 PDB header:transport protein Chain: B: PDB Molecule:retinol-binding protein 4; PDBTitle: crystal structure of retinol-binding protein 4 (rbp4) in2 complex with non-retinoid ligand 5 d1bbpa_ 100.0 23 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 6 d1kt7a_ 100.0 21 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 7 d1iiua_ 100.0 22 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 8 d1gkab_ 100.0 21 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 9 c3ebwA_ 100.0 21 PDB header:allergen Chain: A: PDB Molecule:per a 4 allergen; PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches 10 d1n0sa_ 100.0 24 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 11 d1i4ua_ 100.0 20 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 12 c2hzqA_ 100.0 30 PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone 13 d1z24a1 100.0 22 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 14 d1kxoa_ 100.0 23 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 15 d1x71a1 100.0 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 16 d1qabe_ 100.0 20 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 17 c2l5pA_ 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis 18 c2k23A_ 99.9 16 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 19 c3by0B_ 99.9 13 PDB header:ligand binding protein Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin; PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin 20 d1lf7a_ 99.9 16 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 21 c2e4jA_ not modelled 99.9 21 PDB header:isomerase Chain: A: PDB Molecule:prostaglandin-h2 d-isomerase; PDBTitle: solution structure of mouse lipocalin-type prostaglandin d2 synthase 22 d1ew3a_ not modelled 99.9 17 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 23 c2xstA_ not modelled 99.9 18 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 24 d1epba_ not modelled 99.9 21 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 25 d1pm1x_ not modelled 99.9 16 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 26 d1znda1 not modelled 99.9 13 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 27 d1yupa1 not modelled 99.9 17 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 28 d2a2ua_ not modelled 99.9 17 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 29 d1beba_ not modelled 99.9 18 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 30 d1exsa_ not modelled 99.9 12 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 31 d1gm6a_ not modelled 99.9 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 32 d1jzua_ not modelled 99.9 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 33 c3l4rA_ not modelled 99.9 14 PDB header:allergen, lipid binding protein Chain: A: PDB Molecule:minor allergen can f 2; PDBTitle: crystal structure of the dog lipocalin allergen can f 2 and2 implications for cross-reactivity to the cat allergen fel d 4 34 d1u17a1 not modelled 99.9 13 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 35 d1x8qa_ not modelled 99.9 18 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 36 c3bx6A_ not modelled 99.8 12 PDB header:signaling protein Chain: A: PDB Molecule:alpha-1-acid glycoprotein; PDBTitle: crystal structure of human alpha 1 acid glycoprotein 37 d1avgi_ not modelled 99.8 15 Fold:Lipocalins Superfamily:Lipocalins Family:Thrombin inhibitor 38 c2r73C_ not modelled 99.7 17 PDB header:transport protein Chain: C: PDB Molecule:trichosurin; PDBTitle: crystal structure of the possum milk whey lipocalin2 trichosurin at ph 8.2 39 d1gt1a_ not modelled 99.6 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 40 c3fiqA_ not modelled 99.6 11 PDB header:transport protein Chain: A: PDB Molecule:odorant-binding protein 1f; PDBTitle: odorant binding protein obp1 41 d1bj7a_ not modelled 99.6 12 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 42 d1e5pa_ not modelled 99.5 12 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 43 d1xkia_ not modelled 99.5 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 44 d1dzka_ not modelled 99.4 12 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 45 c2wewA_ not modelled 99.2 12 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein m; PDBTitle: crystal structure of human apom in complex with myristic2 acid 46 c3ebkA_ not modelled 97.7 23 PDB header:allergen Chain: A: PDB Molecule:allergen bla g 4; PDBTitle: crystal structure of major allergens, bla g 4 from2 cockroaches 47 d1pgsa1 not modelled 58.3 41 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:PHM/PNGase F Family:Glycosyl-asparaginase 48 c2k29A_ not modelled 46.0 32 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 49 d2hsga1 not modelled 44.0 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 50 d1lcda_ not modelled 38.2 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 51 d2bjca1 not modelled 36.1 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 52 d1qpza1 not modelled 32.6 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 53 c2lcvA_ not modelled 32.4 17 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 54 c2l8nA_ not modelled 32.3 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 55 d1efaa1 not modelled 31.2 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 56 d2cpga_ not modelled 28.0 25 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 57 d1uxca_ not modelled 18.1 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 58 c2k5jB_ not modelled 16.8 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 59 c3h5tA_ not modelled 14.5 29 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum 60 c2eq9C_ not modelled 14.1 14 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 61 c2kebA_ not modelled 14.0 4 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 62 d3e9va1 not modelled 13.3 22 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 63 d2z15a1 not modelled 13.0 56 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 64 d1uxda_ not modelled 12.9 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 65 c3brnA_ not modelled 12.7 16 PDB header:ligand binding protein Chain: A: PDB Molecule:lipocalin; PDBTitle: crystal structure of am182 serotonin complex 66 d2b78a1 not modelled 12.3 10 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 67 c2eq8C_ not modelled 11.9 18 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 68 c2xlfA_ not modelled 10.8 17 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 69 c2eq7C_ not modelled 10.7 9 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 70 c3kjxD_ not modelled 10.3 29 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi 71 c1zvvA_ not modelled 10.2 17 PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex 72 c3dv0I_ not modelled 10.2 18 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 73 d2cyua1 not modelled 9.5 14 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 74 d2hzab1 not modelled 9.3 20 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 75 d1w85i_ not modelled 8.8 18 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 76 d1xn7a_ not modelled 8.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 77 c1w3dA_ not modelled 8.4 18 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 78 d2bsqe1 not modelled 8.0 13 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Trafficking protein A-like 79 c3jv1A_ not modelled 8.0 9 PDB header:hydrolase Chain: A: PDB Molecule:p22 protein; PDBTitle: crystal structure of the trypanosoma brucei p22 protein 80 d1yqfa1 not modelled 8.0 9 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 81 c3c1dA_ not modelled 7.9 6 PDB header:recombination, dna binding protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: x-ray crystal structure of recx 82 d1w4ha1 not modelled 7.4 14 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 83 d1hmsa_ not modelled 7.3 50 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 84 c2cooA_ not modelled 7.3 14 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase 85 c3eyiB_ not modelled 7.2 15 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 86 c3qv0A_ not modelled 7.1 14 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 87 d2hzaa1 not modelled 7.1 20 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 88 d1p32a_ not modelled 6.9 9 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 89 c1zwvA_ not modelled 6.6 14 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 90 c1w4kA_ not modelled 6.6 27 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase e2; PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions 91 d2bj7a1 not modelled 6.3 10 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 92 d1qfta_ not modelled 6.1 12 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 93 d1myla_ not modelled 6.0 29 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 94 d1wh7a_ not modelled 6.0 48 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 95 c2zf8A_ not modelled 5.9 5 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 96 d1fdqa_ not modelled 5.9 25 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 97 d1bwya_ not modelled 5.9 38 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 98 c2z0rA_ not modelled 5.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0547; PDBTitle: crystal structure of hypothetical protein ttha0547 99 d1o8va_ not modelled 5.7 50 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0