BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (296 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax... 612 e-174 UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=P... 233 8e-60 UniRef50_B9K581 Transcriptional repressor of rpiB expression; tr... 226 7e-58 UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio ... 226 8e-58 UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=G... 215 1e-54 UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 T... 204 2e-51 UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Se... 159 1e-37 UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=A... 158 2e-37 UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=D... 155 1e-36 UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales Re... 152 9e-36 UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n... 152 2e-35 UniRef50_D2AR91 Putative transcriptional regulator, RpiR family ... 148 2e-34 UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=T... 146 8e-34 UniRef50_C0Q155 Protein rpiR n=2 Tax=Salmonella enterica RepID=C... 146 9e-34 UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=B... 146 1e-33 UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostri... 143 7e-33 UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia... 142 1e-32 UniRef50_C8QBF9 Transcriptional regulator, RpiR family n=1 Tax=P... 142 2e-32 UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Ac... 138 2e-31 UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=L... 138 2e-31 UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=A... 137 6e-31 UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=B... 134 4e-30 UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus si... 133 9e-30 UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus ... 132 1e-29 UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=P... 132 1e-29 UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=T... 131 3e-29 UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=F... 130 5e-29 UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostri... 130 7e-29 UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=H... 130 8e-29 UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulat... 130 8e-29 UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=At... 129 1e-28 UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=P... 129 1e-28 UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes Rep... 129 2e-28 UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp... 128 2e-28 UniRef50_P44540 Uncharacterized HTH-type transcriptional regulat... 128 3e-28 UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=B... 126 8e-28 UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator... 126 8e-28 UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=A... 125 1e-27 UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=B... 124 3e-27 UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=... 124 4e-27 UniRef50_Q184N2 Putative phosphosugar-binding transcriptional re... 121 3e-26 UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus ... 121 3e-26 UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=... 120 4e-26 UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enteroco... 120 7e-26 UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=St... 119 9e-26 UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=... 119 9e-26 UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oen... 118 3e-25 UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus ... 118 3e-25 UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator ... 118 3e-25 UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Er... 117 4e-25 UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=O... 117 4e-25 UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseria... 117 4e-25 UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=... 117 4e-25 UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=K... 117 4e-25 UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=B... 117 5e-25 UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=B... 117 6e-25 UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=P... 116 9e-25 UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus la... 116 1e-24 UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional... 115 1e-24 UniRef50_P26833 Uncharacterized HTH-type transcriptional regulat... 115 2e-24 UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax... 115 2e-24 UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATC... 114 3e-24 UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=P... 114 4e-24 UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttle... 114 4e-24 UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmone... 113 7e-24 UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=... 113 8e-24 UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Ba... 113 9e-24 UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=... 112 1e-23 UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostri... 112 2e-23 UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecali... 112 2e-23 UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales ... 111 3e-23 UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=A... 111 4e-23 UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=C... 110 4e-23 UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n... 110 4e-23 UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=S... 110 4e-23 UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n... 110 6e-23 UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostri... 110 6e-23 UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax... 110 6e-23 UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Ba... 109 1e-22 UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteri... 109 1e-22 UniRef50_C9XPJ9 RpiR-family transcriptional regulator n=5 Tax=Cl... 109 1e-22 UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=G... 108 2e-22 UniRef50_C9Q9L7 Helix-turn-helix protein RpiR n=6 Tax=Vibrio Rep... 108 3e-22 UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillale... 108 3e-22 UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillac... 108 3e-22 UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=C... 108 3e-22 UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Provide... 108 3e-22 UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=P... 107 5e-22 UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=B... 106 7e-22 UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax... 106 8e-22 UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus ... 106 9e-22 UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=A... 105 2e-21 UniRef50_B9B6B2 Transcriptional regulator, RpiR family n=3 Tax=B... 105 2e-21 UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulat... 105 2e-21 UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment)... 105 3e-21 UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=... 104 3e-21 UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n... 104 4e-21 UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=S... 104 4e-21 UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocace... 103 5e-21 UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopo... 103 6e-21 UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=T... 103 6e-21 UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putativ... 103 6e-21 UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n... 103 8e-21 UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rh... 102 1e-20 UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, ... 102 1e-20 UniRef50_UPI0000D541FA probable transcriptional regulator n=1 Ta... 102 1e-20 UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=... 102 1e-20 UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax... 102 1e-20 UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. ... 102 1e-20 UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enteroba... 102 2e-20 UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=E... 102 2e-20 UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus... 102 2e-20 UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=C... 102 2e-20 UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=G... 102 2e-20 UniRef50_C8STB5 Transcriptional regulator, RpiR family n=1 Tax=M... 101 3e-20 UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=R... 101 4e-20 UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostri... 100 5e-20 UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostri... 100 6e-20 UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR... 100 7e-20 UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Sta... 100 7e-20 UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=B... 100 8e-20 UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulat... 100 1e-19 UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus ... 99 2e-19 UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostri... 99 2e-19 UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor... 99 2e-19 UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostri... 99 3e-19 UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=K... 98 4e-19 UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=C... 97 5e-19 UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=At... 97 7e-19 UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium ... 96 1e-18 UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=S... 96 1e-18 UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=B... 96 2e-18 UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=A... 96 2e-18 UniRef50_A6W619 Transcriptional regulator, RpiR family n=1 Tax=K... 96 2e-18 UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium bu... 95 3e-18 UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus pl... 95 3e-18 UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteri... 95 4e-18 UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escheri... 94 4e-18 UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=B... 94 5e-18 UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=D... 94 5e-18 UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostri... 94 6e-18 UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=... 94 6e-18 UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=... 94 6e-18 UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonel... 94 7e-18 UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n... 94 7e-18 UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteur... 94 8e-18 UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=S... 93 1e-17 UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=M... 93 1e-17 UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=M... 92 2e-17 UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteri... 92 2e-17 UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=P... 92 2e-17 UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=P... 92 2e-17 UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteoba... 92 3e-17 UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Ga... 92 3e-17 UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=B... 91 3e-17 UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=P... 91 4e-17 UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=E... 91 4e-17 UniRef50_C2L0R5 Possible transcriptional regulator RpiR n=1 Tax=... 91 4e-17 UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium ... 91 4e-17 UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp... 91 5e-17 UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macroco... 91 6e-17 UniRef50_A6M3B1 Transcriptional regulator, RpiR family n=1 Tax=C... 91 7e-17 UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collins... 90 7e-17 UniRef50_A4E6N7 Putative uncharacterized protein n=1 Tax=Collins... 90 9e-17 UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=E... 90 9e-17 UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=R... 90 1e-16 UniRef50_C0C1I3 Putative uncharacterized protein n=1 Tax=Clostri... 90 1e-16 UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=F... 89 1e-16 UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=P... 89 1e-16 UniRef50_A7G380 Transcriptional regulator, RpiR family n=1 Tax=C... 89 1e-16 UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family pr... 89 1e-16 UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteoba... 89 2e-16 UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=K... 89 2e-16 UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=A... 88 3e-16 UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=S... 88 4e-16 UniRef50_P46117 Uncharacterized HTH-type transcriptional regulat... 88 4e-16 UniRef50_C7TGD6 Transcriptional regulator, RpiR family n=3 Tax=L... 87 5e-16 UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostri... 87 5e-16 UniRef50_C0BYY2 Putative uncharacterized protein n=1 Tax=Clostri... 87 6e-16 UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n... 87 7e-16 UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=La... 87 8e-16 UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Ta... 87 8e-16 UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejue... 87 9e-16 UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, ... 87 1e-15 UniRef50_UPI0001BC57B3 oxygen-independent coproporphyrinogen III... 86 1e-15 UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=La... 86 2e-15 UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=D... 86 2e-15 UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=F... 86 2e-15 UniRef50_B1QVU2 Transcriptional regulator, RpiR family n=9 Tax=C... 85 2e-15 UniRef50_Q89XK4 Transcriptional regulatory protein n=1 Tax=Brady... 85 3e-15 UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=C... 85 3e-15 UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulat... 85 3e-15 UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulat... 85 3e-15 UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma p... 85 3e-15 UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collins... 85 3e-15 UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=A... 85 4e-15 UniRef50_A5IPI4 Transcriptional regulator, RpiR family n=54 Tax=... 84 5e-15 UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collins... 84 8e-15 UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=R... 83 9e-15 UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Cl... 83 1e-14 UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=S... 83 1e-14 UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostri... 83 1e-14 UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=F... 83 1e-14 UniRef50_Q4L9T6 Similar to transcriptional regulator n=2 Tax=Sta... 83 1e-14 UniRef50_UPI000169311A hypothetical protein Plarl_08670 n=1 Tax=... 83 1e-14 UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=L... 82 2e-14 UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=L... 82 2e-14 UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n... 82 2e-14 UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacte... 82 2e-14 UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteracea... 82 2e-14 UniRef50_Q21ZX8 Transcriptional regulator, RpiR family n=4 Tax=C... 82 2e-14 UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=B... 82 2e-14 UniRef50_D1AYR1 Transcriptional regulator, RpiR family n=2 Tax=F... 82 3e-14 UniRef50_A6DTP0 Putative transcriptional regulator, rpiR family ... 81 3e-14 UniRef50_C9S176 Transcriptional regulator, RpiR family n=2 Tax=G... 81 4e-14 UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=L... 81 4e-14 UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax... 81 4e-14 UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_... 81 5e-14 UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=B... 80 6e-14 UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 Re... 80 7e-14 UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=A... 80 7e-14 UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=... 80 1e-13 UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales ... 79 2e-13 UniRef50_B0NFU9 Putative uncharacterized protein n=2 Tax=Clostri... 79 2e-13 UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=A... 78 3e-13 UniRef50_UPI0001BC58DB RpiR family transcriptional regulator n=1... 78 3e-13 UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hy... 78 4e-13 UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=S... 77 5e-13 UniRef50_B5RKH7 Transcriptional regulator, RpiR family n=2 Tax=P... 77 6e-13 UniRef50_C4F999 Putative uncharacterized protein n=1 Tax=Collins... 77 6e-13 UniRef50_A5LQQ9 Phosphosugar-binding transcriptional regulator, ... 77 7e-13 UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n... 77 7e-13 UniRef50_D2PSH8 Transcriptional regulator, RpiR family n=1 Tax=K... 77 7e-13 UniRef50_B0PG82 Putative uncharacterized protein n=1 Tax=Anaerot... 77 7e-13 UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulat... 76 1e-12 UniRef50_B7IEI4 Transcriptional regulator, RpiR family n=1 Tax=T... 76 1e-12 UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostri... 76 1e-12 UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1... 76 2e-12 UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=P... 76 2e-12 UniRef50_C5CD76 Transcriptional regulator, RpiR family n=1 Tax=K... 76 2e-12 UniRef50_C0XD02 RpiR family transcriptional regulator n=1 Tax=La... 75 2e-12 UniRef50_C8N6B7 RpiR family phosphosugar-binding transcriptional... 75 2e-12 UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonel... 75 2e-12 UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnoba... 75 3e-12 UniRef50_B0NJ36 Putative uncharacterized protein n=1 Tax=Clostri... 75 3e-12 UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulat... 74 5e-12 UniRef50_C5BWC4 Transcriptional regulator, RpiR family n=1 Tax=B... 74 5e-12 UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostri... 74 6e-12 UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillu... 74 6e-12 UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus ... 74 7e-12 >UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax=Gammaproteobacteria RepID=RPIR_ECOL6 Length = 296 Score = 612 bits (1578), Expect = e-174, Method: Compositional matrix adjust. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS Sbjct: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM Sbjct: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM Sbjct: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP Sbjct: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK Sbjct: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 >UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=Proteobacteria RepID=A1AYM0_PARDP Length = 287 Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 120/278 (43%), Positives = 178/278 (64%), Gaps = 2/278 (0%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 P +G +RMK +T E+R+V+ + +L A++ V+E VS+AM+VK++K Sbjct: 7 PRTVG--AQIRMKLPFLTPLEARVVDTITGRNDLDLTTALRQVSEDAGVSDAMVVKIAKK 64 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 LGF+GFR+ R AL Y L SE++ +++ D++ KVF +++ + E SI++V Sbjct: 65 LGFNGFRDFREALVVYRQTDVASLHSEISPEDSSADIIRKVFQTSIQALEETMSIIDVSA 124 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 RAA + ARQRD YG GGS I DV HKFLRIG+R D H+M+MSA+LL D Sbjct: 125 FDRAATLLHGARQRDFYGVGGSAQIARDVAHKFLRIGLRAGVQDDPHMMLMSAALLGPED 184 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 VV+ +HSG TS+V A LA++ GA++I IT+ +P+++LAD +CS A +PLLG N Sbjct: 185 VVVAFSHSGTTSNVIEAARLARQQGARVIAITNYATAPLSELADIALCSTAQGSPLLGEN 244 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 A+ARI QL ++DA FV+VAQ ++E+A + +T VD Sbjct: 245 AAARIAQLNIMDAIFVAVAQRDLERAEAQLARTRNAVD 282 >UniRef50_B9K581 Transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) n=3 Tax=Proteobacteria RepID=B9K581_AGRVS Length = 291 Score = 226 bits (576), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 114/273 (41%), Positives = 174/273 (63%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P +RM +T E+++V+ + + S ++K +AE VSEAM+VK++K LGFS Sbjct: 10 AVGPRIRMMMPMLTPLEAKVVDTVFGMRDFSEETSLKQIAENAGVSEAMVVKITKKLGFS 69 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR+ RS++ Y Q + EL+ D+ ++V KVF ++ + E +I+++ +A Sbjct: 70 GFRDFRSSVSQYNRQPTTEMHQELSVDDTSLEIVQKVFRTSIHALEETLAILDMAAFDQA 129 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A ++AR RD YG GGS I DV HKFLRIGVR + D+H+M+MSA+LL + DV + Sbjct: 130 ADMIHKARNRDFYGVGGSAQIARDVAHKFLRIGVRASVFDDSHMMLMSAALLADTDVAIG 189 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +HSG T V A++LA+KNGA I +T+ S +A+ AD ++CS A +PL+G NA+AR Sbjct: 190 FSHSGNTIAVIEALQLARKNGASTIAVTNYGSSALAQSADVVLCSTAQGSPLMGENAAAR 249 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 I QL +LDA FV+VAQ + + A N+ +T + V Sbjct: 250 IAQLNILDAIFVAVAQRDYQAAERNLDRTMSAV 282 >UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XGH5_VIBHA Length = 296 Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 119/275 (43%), Positives = 176/275 (64%), Gaps = 10/275 (3%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 P +RM+ +T E I E LKP + + +IK+VAE L VS A+IVKVSK LGFSGF+ Sbjct: 22 PNIRMRMPSLTRTEQSIAENFLKPHFMQKSTSIKEVAERLGVSTALIVKVSKKLGFSGFK 81 Query: 78 NLRSALE-----DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 L+ AL D ++ SEQ+ P D++ + +V KV ++ + E + V+ + + Sbjct: 82 QLKDALNAHHHSDSYAPSEQLQP-----DDSCEQIVTKVLQNSINALTEILNFVDANMVS 136 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 AA AR +LY AGGSN IC D QHK LR G+R D H+M+MSAS+L E DVV Sbjct: 137 AAAEAIINARNIELYAAGGSNIICEDFQHKLLRFGIRASVPRDRHLMLMSASVLSEKDVV 196 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 LVV+HSG+T D+ AV LAK++GA II IT+++H+ +++L+DY + +PA PLLG+N Sbjct: 197 LVVSHSGQTVDLMDAVRLAKQSGATIISITNNFHAELSQLSDYPLYAPASPEPLLGKNGI 256 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 AR+++L ++D+ + ++A +QA N++KT V Sbjct: 257 ARLVKLAMIDSLYATIASKIPDQAEENLEKTTKAV 291 >UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=Gammaproteobacteria RepID=C4L7F8_TOLAT Length = 292 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/261 (43%), Positives = 168/261 (64%), Gaps = 8/261 (3%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + + +RM G++ E +I EWLL GN+ +IK VAE L VSE +IVK+SK L Sbjct: 7 DALATGAKIRMALPGLSNTERQIAEWLLAKGNVESKTSIKSVAEQLEVSEPLIVKLSKKL 66 Query: 72 GFSGFRNLRSALEDYFS----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 GF+GFR LR AL +Y S SEQ E+ ++ + V+NKVF +++ + E +S+ + Sbjct: 67 GFAGFRELRQALVEYLSSLPIDSEQ----EIEPTDSVESVLNKVFANSIQAMKEARSVAD 122 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 I AA+ + A+ ++G GGS A+C D +HK LRIG+ +AY D H+M+M +S L Sbjct: 123 PILIANAAQLIFNAKNVVIFGVGGSAAVCQDFEHKLLRIGILSRAYSDFHMMLMVSSQLD 182 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 E DV++V++ SG T ++ AVE AK+ +++ICIT++ S +A+LADY I SPA LL Sbjct: 183 ENDVIVVISQSGDTRELLKAVENAKQRHSRVICITNNDTSALAQLADYAIFSPAKGGILL 242 Query: 248 GRNASARILQLTLLDAFFVSV 268 G+NA ARI+QL LLD F+++ Sbjct: 243 GQNAVARIVQLNLLDVLFIAI 263 >UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 Tax=Vibrio shilonii AK1 RepID=A6D304_9VIBR Length = 289 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/261 (40%), Positives = 169/261 (64%), Gaps = 6/261 (2%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + P +RM +T+ E I E L+P L + +I +VAE L+VS A+IVKVSK L Sbjct: 9 NSNQVIPNIRMMMPSLTKTEQSIAENFLQPHFLQKSTSINEVAERLSVSPALIVKVSKKL 68 Query: 72 GFSGFRNLRSALEDYFSQSE--QVLPSE-LAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GFSGF+ L+ E ++QSE PSE L D++ + +V+KV ++ + E + V+V Sbjct: 69 GFSGFKQLK---ESLYAQSETQSYAPSERLLPDDSAEKIVSKVLQNSINALTEILNFVDV 125 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + AA +AR +L+ GGS+ IC D QHK LRIG++ D H+M+MSAS++ + Sbjct: 126 SMVDAAAEALLKARNIELFAVGGSSIICEDFQHKLLRIGIKSSVPKDRHLMLMSASIMTD 185 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DVVLVV+HSG+T D+ AV AK++GA +I IT++YH+ ++ L+D + +PA P+LG Sbjct: 186 QDVVLVVSHSGQTVDLMDAVRQAKQSGATVISITNNYHAELSSLSDIPLYAPASPEPVLG 245 Query: 249 RNASARILQLTLLDAFFVSVA 269 +N +AR+++L ++D+ + ++A Sbjct: 246 KNGTARLVKLAMIDSLYATMA 266 >UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1J5_9FIRM Length = 282 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 146/257 (56%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +T++E +I E++L+ N I ++AE + S+A IV+ KL G G++N + L Sbjct: 17 LTKSEKKIAEYILEHPNRVVDATITELAERIGTSDASIVRFCKLFGCKGYQNFKIRLARE 76 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 + L L + + K+FN + T+ E ++NV+ + A+ +A ++ Sbjct: 77 VVPHYKQLNVALEQHDTALTICQKIFNTEIATLHETLEMLNVEHLQTMAQRIREADYIEV 136 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G+GGS+ + D++HKFL++G+RC DA I MSASLL++GDV + ++H+G T V Sbjct: 137 FGSGGSSVVAQDIRHKFLKVGIRCTVLLDADIQAMSASLLKKGDVAIGISHTGSTKSVFH 196 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 +++A+KNGA +I +T SPI ++AD +I + ET + SARI +L ++DA Sbjct: 197 CLKMARKNGAYVILLTTQAKSPIGRIADLVIPVGSKETLFKSESTSARIAELVVMDAVLA 256 Query: 267 SVAQLNIEQANINMQKT 283 + ++ N+ + KT Sbjct: 257 LAVSDDYKKYNVKITKT 273 >UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=Actinomycetales RepID=C7MQM6_SACVD Length = 333 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 6/284 (2%) Query: 6 FDSALPNGIGLAPYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAM 63 DS+ P G +P +R++ G+ E R+ + +L+ + +I +VA A SE Sbjct: 27 VDSSKPAGSEASPLVRIRSLLPGLARAEQRVAKVVLEDPSSVARRSITEVAMAAKTSETT 86 Query: 64 IVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD----VVNKVFNITLRTI 119 + + K +G G+ LR AL +++E +L D D VV+KV R + Sbjct: 87 VTRFCKAIGVGGYPQLRIALAADTARTEAKSSRDLGGDITADDDLASVVSKVSFADARAV 146 Query: 120 MEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIM 179 E +++ E+ R +A + D+YG G S + AD+Q K RIG A+ D HIM Sbjct: 147 EETAEQLDIAELTRVTELLAEATRVDVYGVGASAFVAADLQQKLHRIGRVSFAWSDTHIM 206 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS 239 + SA++L EGDV + ++HSG T+D A+ +AK++GA + IT+ SPIA +AD+++ + Sbjct: 207 LTSAAVLSEGDVAVAISHSGATTDTVEALRVAKEHGATTVAITNFPRSPIASVADHVLTT 266 Query: 240 PAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 A ET ++RI QLT++D F+ VAQ ++++ ++ T Sbjct: 267 AARETTFRSGATASRIAQLTVIDCLFIGVAQRRMDESMAALEAT 310 >UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=Dictyoglomus RepID=B8E0M8_DICTD Length = 281 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 149/264 (56%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 ++ ++E ++E ++ ++L I ++AE + VSEA IV++ K LG GF+ L Sbjct: 9 IKEQKESFRDSEEKVANYILARWQEVLHLPITELAERIGVSEATIVRMCKKLGLRGFQEL 68 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + AL Q + + + + + ++ KVF+ +R + ++++V EI RA Sbjct: 69 KIALATEKIQPIKTVHQAVQEGDDLETILKKVFSANIRAMESTLNVISVKEIERAIDAIL 128 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 ARQ +YG GGS + D QHKF++ G+ AY D+H+M MSAS+L+ DVV+ ++ SG Sbjct: 129 NARQLQIYGVGGSGPVALDAQHKFMKTGIPTVAYIDSHMMAMSASILEPQDVVIGISASG 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 + D+ A+ELAK GA I ITH +P+ ++ D + + ET + SARI QL+ Sbjct: 189 SSKDIFEALELAKNRGATTIGITHYAKTPLDRVLDIKLSVSSEETFYRTESTSARIAQLS 248 Query: 260 LLDAFFVSVAQLNIEQANINMQKT 283 ++D ++ VA +++ N++ T Sbjct: 249 IIDTLYIGVALKRLDKMIENLKLT 272 >UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales RepID=C0ZD50_BREBN Length = 288 Score = 152 bits (385), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 152/277 (54%), Gaps = 1/277 (0%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 +++ P+ + LR ++ E +I +++L+ + +I ++A+ ++A + Sbjct: 1 MNASTPHAPRVLTQLRAIYTQLSGKEQQIADYILEHASEIIHFSITELADQCQCADATVF 60 Query: 66 KVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAP-QDVVNKVFNITLRTIMEGQS 124 ++ + LGF G++ + AL + +Q + E+ D+ + K+F + TI + Q Sbjct: 61 RLCRRLGFRGYQAFKIALASEVTNPKQTIHQEINLDDDDVSAIAEKIFTANIETIRDTQQ 120 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 I+N DE+ + A + + YG+GGS I D HKF+R G+ C + DAH +MSAS Sbjct: 121 IINKDELMKIVSCLENASRIEFYGSGGSAVIAQDAYHKFMRTGIPCLYHSDAHYQVMSAS 180 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 LL +G VV+ ++HSG D+ AA+++AK+ GAK I IT SP+ +LAD + + + ET Sbjct: 181 LLTKGAVVVGISHSGSNKDILAALQVAKEAGAKTIGITSYGKSPLVRLADMCLYTTSRET 240 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQ 281 S+R+ QL+L+D +V+V+ E N+Q Sbjct: 241 VFRTEALSSRLAQLSLIDLLYVAVSLRRQEDTIANIQ 277 >UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n=51 Tax=Bacillus RepID=A8FJ30_BACP2 Length = 285 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 146/269 (54%), Gaps = 12/269 (4%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 GL P L+ E +T I+ +I ++A+ A SEA I ++ K LGF Sbjct: 18 GLPPKLKAIAEHITSEPRDIIHL-----------SIVELAKKTASSEATIFRLCKRLGFE 66 Query: 75 GFRNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF++L+ A+ Q++ + E++ D+ + KVF + + + ++N +++ + Sbjct: 67 GFQDLKIAIAQEIDQTKPNYVDEEMSLDDDMAVFMQKVFQTNISALKDSFQLLNPEDVEK 126 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A + ++A++ + YG+GGS I D HKF+R G+ C + D+H MSA LL + V+ Sbjct: 127 AIQIIHEAKRLEFYGSGGSGLIATDAFHKFMRTGINCIVHTDSHFQAMSAGLLDQHSTVI 186 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++HSGR D+ A++ AK GAK I IT SP+++LAD + + ET SA Sbjct: 187 GISHSGRNKDLLDAMKTAKSKGAKTIGITSYQRSPLSQLADVTLYTATQETAFRTEAMSA 246 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQK 282 R+ QLT++D + ++A L ++ N+++ Sbjct: 247 RLAQLTVIDVLYFALAHLRQQETITNLKQ 275 >UniRef50_D2AR91 Putative transcriptional regulator, RpiR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AR91_STRRD Length = 299 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 2/282 (0%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 P + L +R +T I +L + I + + SEA IV+ ++ Sbjct: 7 PTPVNLVATVRAVLPSLTPAAQAIARLILDDPGMVARSTITEFSAVSGTSEATIVRTARA 66 Query: 71 LGFSGFRNLRSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 LGF+G+ LR AL + + E+++P +L D+ DV+ KV + + + +N Sbjct: 67 LGFAGYSQLRFALAAAVAREEPERLVPGDLGPDDPLTDVIAKVTRAESEALADTAAQLNP 126 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 D + AR+ D+YG G S + AD+ K +RIG A+ DAH+ + SA+LL E Sbjct: 127 DRLGAVVEAMTAARRVDVYGVGASGLVAADMAQKLMRIGRSSHAFTDAHLALTSAALLGE 186 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 GDV + V+ +G T DV A + +A+K GA + IT++ S +A+LA++++ S ET Sbjct: 187 GDVTVGVSCTGETPDVIAPMRVARKAGATTVAITNNPRSSLAELAEHVLVSAGRETAFRP 246 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++RI QL ++D FV +AQ E ++ ++ T +D F Sbjct: 247 GALASRISQLLIVDCIFVGIAQRTFETSDAALRATRGALDEF 288 >UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSQ6_9FIRM Length = 287 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 146/255 (57%), Gaps = 2/255 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G P +R + +T+ E ++ +++L+ +I ++AE +EA I ++ + +G+ Sbjct: 10 GCLPRIRSIYKALTKAEQKVADYILENAAKVVHLSITELAEVSGSAEATIFRLCQKVGYR 69 Query: 75 GFRNLRSALE-DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 G+++ + AL D ++ +E V A D + KVF+ + + I++ + + Sbjct: 70 GYQHFKIALAGDLYTPAELVYKDVNAGDSMGV-IARKVFHDINEGLQDTLKIIDEAALDK 128 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A +AR+ D YG+ GS I AD++++F+R G+ +AY D H+ ++SA+L+Q GD+ + Sbjct: 129 AVAAITKARRIDAYGSAGSAVIAADIEYRFMRFGIPVRAYADPHMQIISAALMQPGDLAI 188 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V+H+G D+ +V +AK+NGA +I IT SP++KLAD +C A ET +A Sbjct: 189 AVSHTGANRDLLDSVAMAKQNGATVIAITSYMKSPLSKLADITLCGSAKETEYRSEAMAA 248 Query: 254 RILQLTLLDAFFVSV 268 R++ L ++DA +V V Sbjct: 249 RLVHLAIVDALYVGV 263 >UniRef50_C0Q155 Protein rpiR n=2 Tax=Salmonella enterica RepID=C0Q155_SALPC Length = 293 Score = 146 bits (368), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 19/233 (8%) Query: 49 AIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQ-----VLPSELAFDEA 103 +I D+A L VS + I KVSK LGF+GF +L+ ++ + +E V+P F E Sbjct: 43 SITDIAHYLKVSVSSITKVSKKLGFTGFHDLKLSISKNINNNEDTVDIPVIPDSEGFIE- 101 Query: 104 PQDVVNKVFNITL-RTIMEGQSIVNVDEIH----RAARFFYQARQRDLY--GAGGSNAIC 156 K+F TL +I+ Q +NV + A F ++ + ++ G GGS +IC Sbjct: 102 ------KIFESTLLNSILALQEALNVIDCSIIKSVAWLFIHKNAEAKIFIAGCGGSASIC 155 Query: 157 ADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGA 216 D HK L+IG+ + D+H +MSASL+++GD++L V+HSG+TSD+ V +A + GA Sbjct: 156 DDFNHKLLKIGIFSTVFSDSHKQLMSASLMRQGDILLAVSHSGQTSDIIQMVNIANERGA 215 Query: 217 KIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVA 269 + IC+T+ +SP++ + + I S P+ G NA+ RI+ L +LDA F +A Sbjct: 216 ETICLTNYPNSPLSLICRHSIISAVKNNPITGENATTRIVHLNILDAIFTIIA 268 >UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=Burkholderiaceae RepID=Q1LPJ6_RALME Length = 338 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 137/261 (52%), Gaps = 1/261 (0%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 + + +E R+ +++ + G + ++A+ VS+ I + LG+ GF+ + Sbjct: 10 DSLRPSERRLADYVARHGASVIRLTMPELADRAGVSQPTIARFCAALGYDGFKEFKLQFA 69 Query: 85 DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 + ++ D+ P D+ KVF+ T+ T+M ++ ++ D+I R AR+ Sbjct: 70 QNVGGGTPFVHQDVEADDRPADIAGKVFDRTIATLMSVRNALSADQIEHGIRLLAGARRI 129 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 + YG G S + D+QHKF R+G+ AY D H+ MSA+LL+ GDV ++V++SGRT D+ Sbjct: 130 EFYGCGNSGIVALDIQHKFFRLGIPTTAYSDPHVFSMSAALLRPGDVAVLVSNSGRTWDM 189 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 A LA+ +GA ++ +THS SP+A+LAD + S E + ++RI L L D Sbjct: 190 LTAATLARSSGASVLALTHS-GSPLARLADVCVFSDVEEDSEVYTPMTSRICHLVLGDVL 248 Query: 265 FVSVAQLNIEQANINMQKTGA 285 VA + +Q+ A Sbjct: 249 AAGVALDRADSVAAGLQRAKA 269 >UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI47_9CLOT Length = 285 Score = 143 bits (360), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 148/261 (56%), Gaps = 2/261 (0%) Query: 29 ENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR-SALEDYF 87 +NE +I E++ ++ D AEA VSEA IV+ ++ LG+ G++ ++ S +D Sbjct: 22 KNEMKIYEFIEINRKEIIHMSVADAAEACGVSEAAIVRYAQKLGYKGYQAMKISIAQDVI 81 Query: 88 SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 +Q+ D P +V+K+F+ ++++ + +++ + I A R+ + Sbjct: 82 EPGQQIYGQLSKGDTIPT-IVDKIFDSNIQSLRDTSDVLSRENIDEAVNLILGCRRLLFF 140 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G GGS + D QHKFL+IG A+ D+++ M+AS+L DV++ V+HSG + D+ A Sbjct: 141 GVGGSGCVAMDGQHKFLKIGYMAMAFTDSNLQAMAASVLTSRDVLVAVSHSGASKDILMA 200 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 +++AK++GAK I IT+ SPI + AD ++ + + ET S+RI +LT++D ++ Sbjct: 201 MDIAKQSGAKTIAITNYGKSPIVEKADVVLYTSSNETAFNSDALSSRIAELTIIDMLYIG 260 Query: 268 VAQLNIEQANINMQKTGAIVD 288 V+ +++ N+ KT +D Sbjct: 261 VSYKRYDESYANILKTRKALD 281 >UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSK7_9FIRM Length = 282 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 153/265 (57%), Gaps = 2/265 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + +T E +I ++L+ + I ++AE VS+A +V+ + LG+ G+++ Sbjct: 10 IRGRMNYLTNTERKIANYVLENYDQVLNSNITELAENAKVSDASVVRFCRSLGYKGYQDF 69 Query: 80 R-SALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + +A +D + + + P L ++P + +K+FN+ + + + +N+ E+ +AA+F Sbjct: 70 KINAAKDVLPREKHLNPI-LEESDSPDMICHKIFNLEISVLERTLASLNMREVEKAAQFI 128 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 + ++ +G+GGS + D HKF++IGV+ + D + +M++SL EGDVV+ ++HS Sbjct: 129 FHGKRVLFFGSGGSLLVGQDALHKFMKIGVQVYVHEDRDLQLMASSLAGEGDVVIGISHS 188 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G V ++ AK+NGA+ I + +P++K+AD +I + + ET + S RI QL Sbjct: 189 GSNYSVLRCLKNAKENGAQTIALVSRGKTPLSKIADVVIDTASEETIFQSESVSTRIAQL 248 Query: 259 TLLDAFFVSVAQLNIEQANINMQKT 283 ++D+ VA +N +++ +QKT Sbjct: 249 AIIDSLVSIVAFMNYDESYRAIQKT 273 >UniRef50_C8QBF9 Transcriptional regulator, RpiR family n=1 Tax=Pantoea sp. At-9b RepID=C8QBF9_9ENTR Length = 297 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 149/273 (54%), Gaps = 12/273 (4%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 LAP L K+ + +R ++ P L+ + +I D+A+ L VS A I KV+K LGF+G Sbjct: 21 LAPELGRKERSI----ARFIDD--NPETLA-SMSITDIADYLDVSVASITKVAKKLGFTG 73 Query: 76 FRNLRSALEDYFSQSEQVL--PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +L+ + + + SE+++ P + + +V ++ + + +++ + Sbjct: 74 FHDLKMNIGKHITVSEELIDVPPVSGGEFYTEKIVESTLYNSILALQDALKAIDIAVVKS 133 Query: 134 AARFFYQARQRD---LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 A F + + G GGS +IC D HK L+IG+ + D+H +M+ASL++ GD Sbjct: 134 VAALFIHRSENARIVIAGCGGSGSICEDFNHKLLKIGIFSSVFSDSHKQLMTASLMRPGD 193 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 ++L V+HSG+T+D+ ++A GA+ IC+T+ +SP++ ++ + I S P+ G N Sbjct: 194 ILLTVSHSGQTTDIINMTKMANDKGAETICLTNYPNSPLSHISRHAIISSVKNNPITGEN 253 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 A+ RI+ L +LDA F +A E + ++ T Sbjct: 254 ATTRIVHLNILDAIFTIIASKTSEFSQESLHNT 286 >UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Actinomycetales RepID=A4F6M8_SACEN Length = 308 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 147/282 (52%), Gaps = 5/282 (1%) Query: 7 DSALPNGIGLAPYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 D LP +P +R++ G+ E R+ +L +I +VAEA SE + Sbjct: 4 DDTLPESGEASPLIRIRSLLPGLARAEQRVANIVLADPASVARRSITEVAEAAGTSETTV 63 Query: 65 VKVSKLLGFSGFRNLRSAL---EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 + K +G G+ +LR AL S ++ L S++ ++ + ++ KV + + E Sbjct: 64 TRFCKAIGVGGYPDLRIALAADTARTSSRDRDLGSDIGPEDDVRKIIEKVSYADAKAVEE 123 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 ++ + + +AR+ D+YG G S + D+Q K RIG+ C A+ D H + Sbjct: 124 TADQLDAETLRSLVDAVARARRIDVYGVGASAFVALDLQQKLHRIGLTCFAWSDTHNALT 183 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 SA++L+EGDV + ++H+G T++ A++ A K GA +T+ SPI ++AD+++ + Sbjct: 184 SAAVLREGDVAIGISHTGATTETVEALQEAGKRGATTAALTNFARSPITEVADHVLTTAV 243 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 ET ++RI QLT++D F+ VAQ +++Q ++ T Sbjct: 244 RETTYRSGAMASRIGQLTVIDCLFIGVAQRHLDQTKAALEAT 285 >UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPL3_9FUSO Length = 285 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 2/257 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR-SALED 85 +++ E I +++LK N S I D+AE + V + I +K LGF GFR R S L D Sbjct: 17 LSKKEKLIADYILKNINKSTNLTIADLAENIGVVNSTIFSFTKKLGFKGFREFRDSLLRD 76 Query: 86 YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 F+ + V +++ +++ ++ KVFN ++++ + + I A + Q Sbjct: 77 QFNSNINV-HEKISKNDSITSIIEKVFNSNIKSLEDTKKIAEKKSFSTALKILTQVDIVH 135 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 +G GGS+ I D HKFLR ++C+ D H+ +M ASLL + D +++HSG T + Sbjct: 136 FFGVGGSSVIAHDAYHKFLRSPLKCRFDSDFHLQLMQASLLTKNDCAFIISHSGMTKESI 195 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 ++AK+ AKII +T S +AK AD S A E S+RI QL++LD F Sbjct: 196 EIADIAKERKAKIIVLTSYPLSILAKKADITFISTAEEIEYRSEALSSRIAQLSILDTIF 255 Query: 266 VSVAQLNIEQANINMQK 282 + V N + I++ K Sbjct: 256 ILVMLNNPTKTQISLNK 272 >UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C6WFA6_ACTMD Length = 304 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 143/273 (52%), Gaps = 6/273 (2%) Query: 17 APYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 +P ++++ G+ E R+ + +L +I +VAE+ SE + + K +G Sbjct: 9 SPLVKIRSLLPGLARAEQRVAKVVLDNPATVAHRSITEVAESAGTSETTVTRFCKAIGVG 68 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQD----VVNKVFNITLRTIMEGQSIVNVDE 130 G+ LR AL +++ +L D P D VV KV R + E +NVD Sbjct: 69 GYPELRIALAADTARTAARTDRDLGGDIGPGDDLRQVVGKVAFADARAVEETAEQLNVDT 128 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + +A + D+YG G S + D+Q K RIG C A+ D HI + SA++L D Sbjct: 129 LQAVVDAVARAGRVDVYGFGASAFVAFDLQQKLHRIGRTCFAWNDTHIALTSAAVLTGAD 188 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V + ++H+G T++ A+ +A++ GA + +T+ SPI+++AD+++ + A ET Sbjct: 189 VAVGISHTGSTTETVEALRVARERGATTVALTNFPRSPISEVADHVLTTAARETTFRSGA 248 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 ++RI QLT++D F+ VAQ ++E A ++ T Sbjct: 249 MASRIAQLTVVDCLFIGVAQHHVESATSALEAT 281 >UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=Bacillales RepID=C4L752_EXISA Length = 282 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 139/256 (54%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +++ E RI +++LK I VA+ L V+E+ + + + +GF G++ L+ AL Sbjct: 17 LSKKEQRIADYILKQPEQIIHHTINQVADDLDVAESTVFRFCQRVGFKGYQALKIALASD 76 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 Q + ++ + ++ K+F+ +TI + I+ + +A F AR+ + Sbjct: 77 VVAPLQDIHEDITETDTALEIAEKIFSTNGKTIESTRQILEGVSLEKAVELFLGARRIEF 136 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G+GGS + D HKF+R G++ A ++H+ +MSAS L DV +V++HSG + + Sbjct: 137 FGSGGSAVVALDAYHKFVRSGLQVSAMLESHMQLMSASQLTTADVAVVISHSGASKETLD 196 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 +L K+ G +I IT+ SP++K+AD + + + ET ++RI +L+L+DA F Sbjct: 197 IAKLLKEKGVPMIAITNYAKSPLSKIADVSLYTVSQETAFRSEALASRIAELSLIDALFT 256 Query: 267 SVAQLNIEQANINMQK 282 +V E A ++Q+ Sbjct: 257 AVMMRRGEAARTSLQQ 272 >UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XRD4_9DEIN Length = 264 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 130/265 (49%), Gaps = 7/265 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT RI +++L + + +VA+A SEA +V+ + LGF GF++ + AL Sbjct: 1 MTPALERIAQYVLHNADQVIYQTVIEVADAAGSSEASVVRFCRDLGFQGFQDFKLALASD 60 Query: 87 FSQSEQVLPSELAFDEAP---QDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 S +LP + E P Q + V+N + + E + ++NVD + +AR+ Sbjct: 61 LVTSPVILPKQ----EKPTSAQSTADYVYNTARQVLDETRRLMNVDLLEEVVERILKARR 116 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 D YG G + D K R+G AYPD H +SA+ L D+ ++ SG + D Sbjct: 117 IDFYGVGNAGTTAQDFAQKLQRLGCAAIAYPDPHSAAVSAATLGPKDLAFGISVSGSSID 176 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 A+E AK GA + +T SPI + AD ++ + APE+PL + A+I QL LLD Sbjct: 177 TVKALEQAKLAGAYTVAVTRGARSPITRFADAVLLTSAPESPLTRGSMGAKISQLMLLDF 236 Query: 264 FFVSVAQLNIEQANINMQKTGAIVD 288 F A + + A + + A+ D Sbjct: 237 LFTRTALRHPKGAELLSKTAAAVAD 261 >UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJF9_BREBN Length = 297 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 137/260 (52%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 T++E ++ +L+ + ++ D+AE V E +++ + +GF G++ + AL Sbjct: 33 TKSEQKVAHIVLQQTDSVIYSSVIDLAEKAGVGETTVLRFCRKIGFHGYQEFKLALAQEL 92 Query: 88 SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 + L E+ D++ + +KV + I + ++ ++++ R +A Y Sbjct: 93 VNPVKNLHGEVGEDDSLDIITHKVTATNQQAIGDTSALFQLEQLERCVDLLQKANTIHFY 152 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G G S D ++ FLRIG+R A+ ++H+ M+A+ L GDV + ++ SG T D + Sbjct: 153 GVGTSAVTAQDAKYTFLRIGLRVDAFNESHLQAMAAATLGPGDVAIGLSVSGSTKDTIDS 212 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 +++AK+ GA IC+TH SPI +AD + + A E PL G + +A+I QL +LD + Sbjct: 213 LKVAKQAGAACICLTHYRRSPITNVADITLLTAAQEGPLQGGSLAAKIAQLHVLDVISTT 272 Query: 268 VAQLNIEQANINMQKTGAIV 287 + N E+A + ++T V Sbjct: 273 ITMRNKEKALLYKERTAKAV 292 >UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7K6_PAESJ Length = 284 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 2/263 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 T E + +++L+ + +I D+AE V EA I + K LGF G++ + AL Sbjct: 17 FTATEKKTADYILEHADAVVYMSITDLAEGCGVGEASIFRFCKALGFKGYQQFKIALAHS 76 Query: 87 FSQSEQV--LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 S ++ L ++ + +D V+K + + E ++ +D I+RA ++ + Sbjct: 77 ISADNEIPQLSGQVKIQDTLEDAVSKTLQSNINALNETFKLIQLDSINRAIDLLIRSDRF 136 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 YG G S + +KF+RI + D+H MSA+L+ E DV +++++SG T D Sbjct: 137 IFYGVGSSLMTAMEANNKFMRITNKTGCSVDSHQQAMSAALMGERDVAIIISYSGSTKDS 196 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 + AK+ GA II IT SP+ +D + A E PL G + SA+I QL LLD Sbjct: 197 IEVAKKAKERGAAIIVITRFVKSPLTSYSDITLLCGANEGPLQGGSLSAKIAQLYLLDVL 256 Query: 265 FVSVAQLNIEQANINMQKTGAIV 287 +V + E + +N + T A V Sbjct: 257 YVEYFKRTYEASIVNKENTSAAV 279 >UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q8T9_9THEO Length = 282 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 131/242 (54%), Gaps = 2/242 (0%) Query: 30 NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ 89 +E++I +++L ++ +I ++A A SEA IV+ + +G GF+ L+ + S+ Sbjct: 18 SEAKIAKYILDNADVVTELSINELARACDTSEASIVRFCRTIGLKGFQELKIKIAVSLSK 77 Query: 90 SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGA 149 + L + D+ DV+ K+ N + I S+++V I +A A + D YG Sbjct: 78 QTKKLDGGITDDDDVSDVIQKIANFNKQAIDNTISLLDVKSIIKAVDALSNANKIDFYGV 137 Query: 150 GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVE 209 S + D KF RI + C AY D H+ + SA+ L++GDV +++SG T ++ A+E Sbjct: 138 AASGTVAYDAMLKFARINIPCTAYQDTHLQLTSAANLKKGDVAFGISYSGCTREIVEALE 197 Query: 210 LAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA-RILQLTLLDAFFVSV 268 +AK+ GA I +T P+ K+AD I + E PL A+A RI QLT++D F+ V Sbjct: 198 VAKEAGATTISLTKFGQFPLVKVAD-INLFVSSEEPLFRSGATASRIAQLTVIDILFILV 256 Query: 269 AQ 270 A+ Sbjct: 257 AK 258 >UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=Firmicutes RepID=A6LVH8_CLOB8 Length = 282 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 139/260 (53%), Gaps = 5/260 (1%) Query: 26 GMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL-- 83 G++ E I +++L+ +I +++ L V+++ + + +K LG+SGF+ + A+ Sbjct: 15 GLSAKEQNIADYILENPISVAHNSISYLSDELNVADSTLFQFAKKLGYSGFKEFKMAILI 74 Query: 84 -EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 E+ FS + + ++ D+ + KVF+ ++T+ + I+ +D++ +AA + Sbjct: 75 EENNFSTTS--IHEKIEIDDNELTMAQKVFDSNIKTLTNTKKILGLDDLKKAAEIISNSN 132 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 +G GGS + D HKFLR + D HI +M ASLL D + ++H+G++ Sbjct: 133 LLYFFGVGGSGILAEDAYHKFLRSPAHVRHSTDYHIQLMEASLLTPQDCAICISHTGKSK 192 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 + E+ K+ GAK+I IT SP+AK+ D + S + E S+RI QL++LD Sbjct: 193 ETIRIAEIVKEAGAKVIVITSHASSPLAKIGDVVFISISEEIEFHSEALSSRISQLSILD 252 Query: 263 AFFVSVAQLNIEQANINMQK 282 + +V + +N E++ + K Sbjct: 253 SLYVILMFMNKEKSKEALSK 272 >UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWE9_9CLOT Length = 301 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 137/260 (52%), Gaps = 1/260 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + NG L + K+ +++ E E++ +I D+AE SEA + +V Sbjct: 20 ISNGT-LYDRVEEKRGSLSKKELETAEYMAAHQEQLIYSSITDLAERAGSSEATVTRVCG 78 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LG+ GF+ L+ + + ++ + L D + ++ K+F+ + T+ Q +NV Sbjct: 79 KLGYRGFQALKVGVARELTTPQEKIHENLEADSPAEVIIEKIFSSAIETLSMTQKSINVK 138 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + + +AR+ + G G S +I AD QHKFLR+ + AY D H+ M++ S + + Sbjct: 139 AVAASIDALCRARRIIIIGNGNSASIAADAQHKFLRLDLNAHAYTDDHMQMIAVSSMTDQ 198 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV+L +++SG + +V A AK+ GA +I +T+ SP++KLAD + + + ET Sbjct: 199 DVLLAISYSGSSRNVVEAAHQAKEQGATVISLTNEGSSPVSKLADICLNTYSQETRYRTY 258 Query: 250 NASARILQLTLLDAFFVSVA 269 S+R+ +LT++D + VA Sbjct: 259 AISSRMAELTIIDTIYTGVA 278 >UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNZ1_HIRBI Length = 297 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 138/268 (51%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R++++ + + S I +++L N ++ ++AEA SE ++ + + LG SGF+ L Sbjct: 25 IRIRKDSLGPSTSTIADYVLGHANAVVGMSVTELAEATGTSEGSVINLCRQLGLSGFQQL 84 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + +L + Q + +L + V K+F+ + E SI++ D I A Sbjct: 85 KLSLAQEVVRPVQFIHEDLQPSDDTSTVCQKMFHAGSEALRETLSILDPDAISMAVDVIR 144 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A + ++YG G S I D Q++ LRIG+ + D+HI +SAS VL ++HSG Sbjct: 145 SADRVEIYGIGSSAPIAEDAQYRMLRIGLDAKVVVDSHIQAISASRTGPNVAVLTISHSG 204 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T + AA LA+ GAK I IT+ SP+ AD + + A ET ++RI QL Sbjct: 205 STHETLAATRLARDAGAKTIIITNFASSPLQAYADVKLYTMARETKFRSEAMTSRIAQLC 264 Query: 260 LLDAFFVSVAQLNIEQANINMQKTGAIV 287 +LD ++A + E+A +++T ++ Sbjct: 265 ILDVLIAALALDDYERATTVLRQTSEVL 292 >UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulator TTE0211 n=3 Tax=Clostridia RepID=Y211_THETN Length = 282 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 131/251 (52%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R T +E++I +++L+ + ++ ++A A SEA I++ + +G GF+ L Sbjct: 8 IREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGLKGFQEL 67 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + + ++ + L + ++ V+ K+ N + I +++N +E+ +AA Sbjct: 68 KIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTKAAEALA 127 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A + D YG S + D KF RI + C AY D H+ + SA L++GDV +++SG Sbjct: 128 NANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAFGISYSG 187 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T ++ A++ AK+ GA I +T SP+AK AD + + E ++RI QLT Sbjct: 188 ATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMFRAGAMASRIAQLT 247 Query: 260 LLDAFFVSVAQ 270 ++D F+ VAQ Sbjct: 248 VIDILFILVAQ 258 >UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9G3_9ACTN Length = 285 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 125/240 (52%) Query: 29 ENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFS 88 E E I +++L+ + I ++A+ L V+++ I K ++ +G+ GFR+ R+ L Sbjct: 19 EKEQAIAQFILQHVRETSYMTIHELADKLGVADSTIFKFAQKMGYKGFRDFRNDLLTEAY 78 Query: 89 QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYG 148 E + + ++ + +F+ ++ ++ +++N D + RA A +G Sbjct: 79 DPEVSVHEHITTRDSLATIAATIFHSSVTSLHNTLALLNEDNLKRALSLINNAHTLTFFG 138 Query: 149 AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAV 208 GGSN + AD HKFLR + CQ D HI +M ASLL DV ++++HSG + Sbjct: 139 CGGSNIVAADAYHKFLRSPLHCQNAIDEHIQIMQASLLGAQDVAIIISHSGLSRTTLQIA 198 Query: 209 ELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSV 268 E+ ++N II IT ++PI + AD + S + ET + ++R+ QL +LD F +V Sbjct: 199 EILRENRVPIIFITSYLNTPITRFADVVFISASEETGYRSESLASRVAQLVILDTLFCAV 258 >UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=Propionibacterium acnes RepID=D1YCB1_PROAC Length = 290 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 6/274 (2%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L P + M + M E+++ +L + + A + +AEA VS A +V+ + LG SG Sbjct: 5 LLPRIDMARTTMRPAEAQVAAVILAKPDWTLAASTSQLAEAAGVSPATVVRFCRALGMSG 64 Query: 76 FRNLRSALEDYFS------QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +R LR+ L S + V + D++ ++ K+ RTI V+ D Sbjct: 65 YRELRTELARDLSRRTLELERSSVAEGTITLDDSLTQMITKIAFHEARTIENTARAVDAD 124 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ A A + L+G G S + +D+ K RIG+ CQ + D H+ ++ A+L + Sbjct: 125 ELEAVASAISIAPRTALFGVGSSGLVASDLSEKLERIGLVCQHHQDTHMQLVHAALCKRP 184 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 V L ++ SG T +V A+ +A+K+GA + +T SP+ +LAD+++ + A ET + Sbjct: 185 CVALGISFSGNTQEVVEALTVAQKHGATTVAMTGLPDSPVGRLADHVLVTSARETQVRAG 244 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 S+R+ QL ++D F VAQL ++ + T Sbjct: 245 AMSSRMAQLAVVDFLFARVAQLCMDDLETLLSST 278 >UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes RepID=Q8R7I8_THETN Length = 285 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 2/244 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +T E ++ +++L+ +I ++AE E IV+ + +G SGF+ + L Sbjct: 20 LTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLSGFQEFKLNLAKE 79 Query: 87 FSQSEQVLPSELAFDEAPQDV-VNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 ++ E + ++F++ P DV V K+ I ++++ E+ +A AR+ Sbjct: 80 IAEPETSIHENISFND-PLDVLVQKITTENTLAISNTVKLLSMSELEKAVDAIINARKIQ 138 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 YG G S D ++KF+R+G+ A DAHI +SA L + DV + ++ SG T D Sbjct: 139 FYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLTDKDVAVGISFSGSTKDTV 198 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 LAK+ GA++I IT+ SPI +AD ++ + A ETPL +++I QL +LD + Sbjct: 199 ETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRSGALTSKIAQLHILDILY 258 Query: 266 VSVA 269 +VA Sbjct: 259 TAVA 262 >UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I531_9CLOT Length = 284 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 140/262 (53%), Gaps = 5/262 (1%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +T+ E++I +++ + N S + ++A V EA + + + LGF F + + Sbjct: 12 LTKAENKICDYIEEYMNSSIYMTVTEIANNCGVGEATVTRFCRKLGFRSFLEFKMTMAQE 71 Query: 87 FSQS----EQVLPSEL-AFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQA 141 F S E ++ SE+ + +++ + V K + I + ++ E ++ I + +A Sbjct: 72 FKNSGYDNEDIIESEVVSENDSLGEFVKKFYEINVNSLEETLKKIDYSMIEEISDILVKA 131 Query: 142 RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 ++ G G S I D +KF++IG+ C Y D+H ++M ASL++EGDV+ ++++SG T Sbjct: 132 KRISFTGVGHSGIIAEDAYYKFMKIGLICNCYRDSHTLVMMASLMKEGDVLFIISNSGNT 191 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLL 261 ++ A E+A++N K+I IT + S +A+++DY++ E + + RI Q L+ Sbjct: 192 EEINIAAEIARENNVKVISITENLLSKLARVSDYVLNYTDQEIKIDMESFGIRISQNFLI 251 Query: 262 DAFFVSVAQLNIEQANINMQKT 283 D +V + N E A ++ KT Sbjct: 252 DLICTNVIRKNKEIAVVSKSKT 273 >UniRef50_P44540 Uncharacterized HTH-type transcriptional regulator HI0143 n=33 Tax=Gammaproteobacteria RepID=Y143_HAEIN Length = 288 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 138/263 (52%), Gaps = 4/263 (1%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 + +T++E +I + +L+ +L ++ ++A+ L V EA +V+ + +GF GF + L Sbjct: 16 QSLTKSEKKIADTILRSPDLVSQCSLSEIAKHLQVGEATLVRFCRTIGFKGFSEFKLELS 75 Query: 85 DYFS----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQ 140 + Q E +L +E+ + + K+ + E +++++ ++ + + Sbjct: 76 IELATKDNQDESILETEIMPSDDSLTIAQKLQTAVANVMEETINLLDLKQLEEVVKVLKK 135 Query: 141 ARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGR 200 AR+ L+G G S D ++K +RIG + A + H M M A+LL DV + ++HSG Sbjct: 136 ARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAALLTSSDVAIGLSHSGY 195 Query: 201 TSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTL 260 +++ +++AK+NGA + +THS SP+ + ADY++ + + L G + +I QL + Sbjct: 196 SAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGKLQGDSIGTKIAQLFV 255 Query: 261 LDAFFVSVAQLNIEQANINMQKT 283 LD + + Q + A QKT Sbjct: 256 LDLIYALLVQGEEDIAAQTKQKT 278 >UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6X6_RUMHA Length = 297 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 139/254 (54%), Gaps = 8/254 (3%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR--SA 82 E + E +I +LL + S + ++A+ + VS+A IV+ K +G++GF+ + +A Sbjct: 30 EHTKKTERKIAAYLLGNFDKSLHSTLLELADEIGVSDASIVRFCKSIGYTGFQEYKINAA 89 Query: 83 LEDYFSQSEQVL--PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQ 140 L+ S E L PS L+ D+ P ++ +K+F I + + + +++ +++ A + Sbjct: 90 LQ---SVPEPRLYNPS-LSVDDNPAEICDKIFAIESSALEQTKQELDISVMNKVADVLLK 145 Query: 141 ARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGR 200 AR+ +L G GGS D QHK L+IGVR + D + +MSASLL E DV+ ++HSG Sbjct: 146 ARRINLVGTGGSAISARDFQHKLLKIGVRAELQEDKDLQLMSASLLTEEDVLFAISHSGS 205 Query: 201 TSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTL 260 V +ELA+K AKII +T + + + ADY + + +T + SAR+ QL + Sbjct: 206 NLHVAETIELAQKRNAKIITLTMKSKNILVEKADYPLYVVSEKTIFESESFSARLAQLAM 265 Query: 261 LDAFFVSVAQLNIE 274 LD +A N + Sbjct: 266 LDCLVALMAFKNFD 279 >UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator n=2 Tax=Enterococcus casseliflavus RepID=C9AZQ1_ENTCA Length = 283 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 142/260 (54%), Gaps = 15/260 (5%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL---EDYF 87 E I +++L+ + +I D++ L ++++ + +K LG++GF++ + A+ E+ F Sbjct: 20 EQAIADYILENPSKVSHSSISDLSNELGIADSTFFQFTKKLGYNGFKDFKMAMLMQENDF 79 Query: 88 S-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 S ++ Q +EL + KVF+ + T+ + ++++ +++ AA Q++ Sbjct: 80 SAISIHENIQKSDNELT-------MAQKVFDSNMTTLTDTKNLLKEEDLKLAAAMINQSK 132 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 + +G GGS + D HKFLR + D HI +M ASLL D + ++H+G++ Sbjct: 133 RLFFFGVGGSEIVATDAYHKFLRSPITVFHSSDYHIQLMEASLLTPDDCGIFISHTGKSR 192 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 + ++AK NGAKII IT SP+AKL D + S + ET ++RI QL+++D Sbjct: 193 ETIELAQVAKNNGAKIIVITSHAASPLAKLGDVVFISISEETEFRSEALASRIAQLSIMD 252 Query: 263 AFFVSVAQLNIEQANINMQK 282 + +V + +N ++A ++ K Sbjct: 253 SLYVILMFINRDKAQQSIAK 272 >UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM70_9ACTN Length = 283 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 124/249 (49%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + +++ E ++ E+LL + + I +A+ L ++++ + K ++ LGF GFR+ Sbjct: 10 VRALESSLSDKERQLAEFLLADPHKASKMTISQIAQTLGMADSTVFKFTQKLGFEGFRDF 69 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 R L E + + P+ + VF ++R++ + + + + +I AA+ Sbjct: 70 RGELAAEGFDPEVSIHEHITHKSTPKQMAETVFESSIRSLTDTKELFSEQDIIHAAKLIE 129 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 Q YG GGS+ + AD HKFLR R D H+ +M AS D L+V+HSG Sbjct: 130 DCYQLTFYGMGGSSVVAADAYHKFLRTPKRVAYDADFHLQLMRASRSNGDDCALLVSHSG 189 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 R E ++ GA I IT + SP+ LAD + + A ET + ++RI QL Sbjct: 190 RCIQTIQIAEKLREVGASTIVITSNPSSPLTALADACLVTIAEETAYRSESLASRISQLA 249 Query: 260 LLDAFFVSV 268 L+DA + V Sbjct: 250 LVDALYTIV 258 >UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=Bacteria RepID=A6LRF3_CLOB8 Length = 294 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 134/247 (54%), Gaps = 8/247 (3%) Query: 30 NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL------ 83 +E ++ +++L G+ + +++ + VSE I++ K +G SG+ + AL Sbjct: 21 SEKKVADYVLLNGHSVSTMTLAELSRQVGVSEPTIIRFVKSIGCSGYSEFKMALMKEWGR 80 Query: 84 EDYFSQSEQVLPSELAFD--EAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQA 141 E Q + L EL D E +DV K+ +T++ + + I+++++ +A + Sbjct: 81 ESVDKQYDSKLLVELHIDRDEKIEDVPVKMIGLTIKALEDTLKIIDINKYKKAIEMIRSS 140 Query: 142 RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 D+YG G S ++ +D+++KFLRIG+ C+AY D++I + AS L D+ + V+HSG T Sbjct: 141 NIIDVYGVGNSGSVASDIRNKFLRIGLECRAYSDSNIQQICASHLTSNDLAIGVSHSGST 200 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLL 261 D A+++AK++GA+ I +T+ I++ AD + ET +RI QL ++ Sbjct: 201 IDTVNALKIAKESGARTIALTNFKAPAISEYADITFFTGGEETTFYSETMVSRISQLAIV 260 Query: 262 DAFFVSV 268 D ++ + Sbjct: 261 DMLYMGI 267 >UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789683 Length = 289 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 139/265 (52%), Gaps = 8/265 (3%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR-SALED 85 +T+ E ++ +++ + + D++E V E +++ + LGF GF + S +D Sbjct: 24 LTKTEKKVADYVKGFPEETVLATVTDLSEKAGVGETSVIRFCRKLGFRGFHEFKLSVAQD 83 Query: 86 YFSQSEQVLPSELAFDEAPQDVVNKV---FNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 + V+ + + + V K+ I L+ ++ +VN D + A A Sbjct: 84 LVDRPPSVVDTSIDEQDDLMTVARKLTMQHEILLKNTLD---LVNADNLRMAVDKLLAAN 140 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 + +YG G S D+ ++ +R+G+ +A+ D+HI+ MSASL+++GD+V ++ SG T Sbjct: 141 KVYVYGVGSSGITALDLHYQLMRLGLNVEAHRDSHIIAMSASLVKKGDLVFAISTSGSTR 200 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 D+ AV+ AKKNGA +IC+T SPIA AD ++ + E P G + + +Q +L+ Sbjct: 201 DLVDAVKEAKKNGADVICLTGHLRSPIATYADTVLLVSSREMPTEGGALATKFMQTYMLN 260 Query: 263 AFFVSVAQLNIEQANINMQKTGAIV 287 ++ + E A+ +++KT + V Sbjct: 261 -ILTTLLTMKKEDASESLKKTASSV 284 >UniRef50_Q184N2 Putative phosphosugar-binding transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q184N2_CLOD6 Length = 283 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 150/279 (53%), Gaps = 3/279 (1%) Query: 16 LAPYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 ++ L++KQ E +TE + +I +++L ++ ++A S A IV+ S+ +G+ Sbjct: 1 MSCILKLKQIYEDLTEVDKKIADYILNNTEAISKLSVSELASNSKTSTASIVRFSRKMGY 60 Query: 74 SGFRNLRSAL-EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 SGF +L+ + +D + + + +D V+NK+ N + TI + + + D I Sbjct: 61 SGFGDLKIEIAKDLMGKENEYTYVDENYDCNIDSVINKITNKNIETINQTRLLNEKDIIK 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A +A+ ++G GGS + D+Q K LRI + D+H +M +S + + D+ Sbjct: 121 EAVEQIIKAKNVYIFGVGGSALVALDLQMKLLRINKQAFTSLDSHTQLMVSSNVDKEDIA 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG + +V ++E AK G K+ICIT + ++K++D + P E L S Sbjct: 181 IAISYSGESKEVIKSIENAKLKGCKVICITKYSDNHLSKISDLKLVVPNIEKRLREGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +RI LTL+D ++S+ Q N+ +A +Q+T I+D+ + Sbjct: 241 SRIAMLTLIDIIYISIIQENLNEAEQKLQETKRILDYLN 279 >UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7S3_BREBN Length = 288 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 146/264 (55%), Gaps = 7/264 (2%) Query: 8 SALPNG--IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 S + NG +GL L + + +E ++ +++L +++ +AE VSEA I+ Sbjct: 2 SHMLNGGLVGLQAIL----DQLKPSERKVADYILAHPEDVVKLSVQKLAEYSGVSEATII 57 Query: 66 KVSKLLGFSGFRNLRSALE-DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 ++++ L G++ L+ + D Q+ + E+ + + + ++ V +++I + S Sbjct: 58 RLARSLNMKGYQELKLRVAGDLTKQTARGSYQEIMMEGSVESIMQAVSWNNIQSIQDTLS 117 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 +++ +E+ +A AR+ D+YG G S I D++ KF RI + C+AY D H + SA Sbjct: 118 VLSNEEVKKAVDVLSVARKIDVYGVGASAVIADDIRQKFSRINLWCEAYSDFHAQLTSAV 177 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 L E DVV+ +++SG+T D+ ++ AK+ GA II +T SP+A+LA+ + + + E Sbjct: 178 TLTEKDVVIGISYSGQTEDIIQSLTEAKQQGATIITLTKFGPSPVAELANIRLFTSSVEK 237 Query: 245 PLLGRNASARILQLTLLDAFFVSV 268 + ++RI QL ++D F+++ Sbjct: 238 SIRSGAMASRIAQLNVIDILFITM 261 >UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=Clostridium RepID=A7GD47_CLOBL Length = 281 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 147/277 (53%), Gaps = 3/277 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ +R + MT++E +I E++ K + + +++A + S A I++ +K +G+ Sbjct: 1 MGVLLRIRENFDSMTKSEKKIAEYIFKSPKDIISDSAQEIAIKTSTSPASIIRFTKKVGY 60 Query: 74 SGFRNLRSAL--EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 + + AL E+Y +S + + ++++ ++NK+ N + TI + + +V+ +++ Sbjct: 61 NSLNEFKFALVAEEYTKESTE-FDYIINYNDSIDSIINKLGNKVIDTINDTKELVDDEKL 119 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A + A LYG G S + D Q+K LRI + D+H+ + + + DV Sbjct: 120 LEAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDV 179 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + +++SG T +V AVE AKKNGA I IT S ++ +AD + P+ E L Sbjct: 180 AVAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAI 239 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 S+R QL + D+ F+ +A+ N+++ N+ T +V+ Sbjct: 240 SSRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVE 276 >UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enterococcus RepID=C0X1P6_ENTFA Length = 285 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 131/249 (52%), Gaps = 14/249 (5%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRS--ALE 84 +T++E ++ +++L G + D+ V +A I++ + LGFSGF +L+ A E Sbjct: 27 LTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGFSGFSDLKIEIAKE 86 Query: 85 DYFSQSEQVLPSELAF-DEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 D+ + EQ PS + DE + ++ + ++N +++ +A + QA Sbjct: 87 DFSKKKEQ--PSSGKYHDEVAKSLI--------EVLQSTSCLINEEKLTKAIQLINQASS 136 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 ++G G S D++ FLR+G++ +A D H ASLL + D+V++ + SG+T D Sbjct: 137 LYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVIIFSLSGKTKD 196 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 ++++AK NGAKI+ IT+ HSPI K AD ++ A E L G + + +I QL + D Sbjct: 197 TYDSLKIAKNNGAKILAITNYIHSPIGKSAD-LVLQTAIEEFLNGGSLAGKISQLYICDL 255 Query: 264 FFVSVAQLN 272 Q N Sbjct: 256 LVHEYEQNN 264 >UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=Streptomyces RepID=B5HLI6_9ACTO Length = 317 Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 5/269 (1%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 G LA +R MT + R+ E + A + +AE SEA +V+ ++LLG Sbjct: 32 GSALAAKVRTLGPSMTRSMHRVAEAVAADPAGCAALTVTGLAERTGTSEATVVRTARLLG 91 Query: 73 FSGFRNLRSALEDYF----SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 + G+R+LR AL S + +++A D+ DVV K+ +T+ + + ++ Sbjct: 92 YPGYRDLRLALAGLAAQQQSGRAPAITTDIAVDDPIADVVAKLAYDEQQTLADTAAGLDT 151 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 ++ A AR+ D+YG G S + D+ K LRIG+ QA+ D H+ + +A L+ Sbjct: 152 AQLGAAVAATASARRIDVYGVGASGLVAQDLTQKLLRIGLIAQAHSDPHLAVTNAVQLRS 211 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-CSPAPETPLL 247 GDV + +THSG T DV + +A ++GA + IT + + AD+++ S A E+ L Sbjct: 212 GDVAIAITHSGATGDVIEPLRVAFEHGATTVAITGRPDGAVTQYADHVLTTSTARESELR 271 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQA 276 S+R QL ++D FV VAQ E A Sbjct: 272 PAAMSSRTSQLLVVDCLFVGVAQRTYETA 300 >UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=Bacillales RepID=C4KZ09_EXISA Length = 301 Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 2/256 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L + + +E MT E +I +++L L K++A+ VSEA IV+ ++++G Sbjct: 22 SLLTKIDLAKEDMTAVEKKIADYILSHSTLIPNMTTKELAQKTDVSEASIVRFARVVGID 81 Query: 75 GFRNLRSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F+ + AL + +E L + L + P D KV ++ I ++ E+ Sbjct: 82 SFKAFKLALVKDLAVTETTLTDFNVLQQKDTPYDSFQKVIHVNKAAIEACAEAMDKRELE 141 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A F +A + YG GGS+ D Q+KF ++G PD H M+ L + DV Sbjct: 142 HAVDLFARASRVIFYGVGGSSTAAIDAQYKFTKLGYAATTSPDFHYMLSLIPHLGKSDVF 201 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++ SGRT DV V AKK +I IT+ SP+ + AD +C+P E+ + + Sbjct: 202 VAISTSGRTKDVLELVRFAKKKRVPVIAITNLDKSPLYREADVRLCTPNVESDFRIASIA 261 Query: 253 ARILQLTLLDAFFVSV 268 +R+ QLT++D ++ + Sbjct: 262 SRMTQLTIIDTLYMGL 277 >UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oeni RepID=Q04DU1_OENOB Length = 282 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 129/258 (50%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R E + E RI +++L + I+ +++ + +S A I + ++ LG+ FR+ Sbjct: 8 IRSYYEKLHPGEKRIADYILSHQDSVMDATIQSLSDKIGISTASISRFTRHLGYPNFRDF 67 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 AL S +E+ + + +V K+F+ + + + +N+ ++ R + Sbjct: 68 LIALSASKKNSSSDFFTEIKQSDQSEQIVKKLFSAGIAALTATAANINMKDLDRVVDWLV 127 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 + + +G GGS+ + + HKFLR + ++PD I +M A+ L D+ +V++HSG Sbjct: 128 SSNKIGFFGIGGSSIVAFNAYHKFLRTNLNIVSHPDYDIQIMQAAHLTSEDLGIVISHSG 187 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 R D ++NG+KI+ IT SPIAK AD ++ S + E + S+ + Q+T Sbjct: 188 RNQDTLLVENKLRENGSKIVAITAFPESPIAKNADIVLNSYSEEVNFRQESMSSLVAQIT 247 Query: 260 LLDAFFVSVAQLNIEQAN 277 ++D F V EQ + Sbjct: 248 IIDTLFTLVGHRLNEQTD 265 >UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J4B4_9BACL Length = 288 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 137/273 (50%), Gaps = 7/273 (2%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAP--AIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +R +E +T E + E++L N P +IK +A+ S+A +++ K +G+SG+R Sbjct: 12 IRDMKENLTPVERMVAEYIL--ANTEDIPHLSIKSLAKLSKTSDASVLRFCKTMGYSGYR 69 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNIT---LRTIMEGQSIVNVDEIHRA 134 + ++ + + + D+ + NI+ +++I + S+++ E+ RA Sbjct: 70 SFIVSISAALGSMDDERKDQYTDIQPGDDLDTIIANISRNNMKSIEDTLSVLDRGEVARA 129 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + + + +G G S +C D + KF RI C +Y D H + +A+LL +GDV + Sbjct: 130 VKALRASNRIVFFGIGASGLVCQDGEQKFSRINKMCHSYTDGHSQLTAATLLGKGDVAIF 189 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V++SG T ++ +E+AKKN A + IT S +A AD ++ PE + +R Sbjct: 190 VSNSGNTLEIIETLEIAKKNNATTVAITKYNKSELADKADILLGISTPEITMRSGAMGSR 249 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 I LT++D F VA + + KT +I+ Sbjct: 250 IAMLTIIDMLFAGVASAEYQNVKKYLTKTHSIL 282 >UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator n=24 Tax=Neisseria RepID=A9M040_NEIM0 Length = 282 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 133/256 (51%), Gaps = 6/256 (2%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E ++ E L A+ ++AE +VS+ +++ + LG+ G + AL S Sbjct: 16 ERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKGLPEFKLALS--ASIG 73 Query: 91 EQVLP---SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 + +P EL D+ VV KV +++ + + E+ A AR+ + Y Sbjct: 74 HEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENAIATLMHARRVEFY 133 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G G S + D QHKF R G+ AY D H +M+AS+L + DV++ ++++G + ++ A Sbjct: 134 GVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVAISNTGSSIELLDA 193 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 V +AK+NGA +I +T + SP+A+LAD ++ E L +R+LQL ++D + Sbjct: 194 VSIAKENGASVIALTRN-DSPLAQLADCVLSVATQENAELYTPMVSRLLQLAVIDILAIG 252 Query: 268 VAQLNIEQANINMQKT 283 +A + A++ +QK+ Sbjct: 253 LALRLGDAASLQLQKS 268 >UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZR0_ERYRH Length = 280 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 131/249 (52%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 T+ E RI E++L+ + + + A+ + S A IV+ SK +G++GF +L+ L Sbjct: 15 TDTEKRIAEYILENKDEVVNFSSQHFAKEINSSAAAIVRFSKKIGYNGFTHLKVELARDH 74 Query: 88 SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 S+ EQ + ++ + +V K RT ++N++ + + AR+ L Sbjct: 75 SEEEQSFDKLIKEEDTIETMVRKSHYSNHRTFDNTYKLLNLEVLDASIAAISNARRIYLL 134 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G GGS +C D+ HKF+RI + D H+ M S + + E DV + +++SG+T ++ A Sbjct: 135 GIGGSGIVCQDLYHKFVRIDADVVYFDDFHLEMSSLTHITENDVTIALSYSGQTREIIMA 194 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 +LA+ GA I IT + +AK +D++I P E+ + + ++R L + D ++ Sbjct: 195 QKLAQDKGATTIAITQVGRNELAKNSDFVINIPKEESEVRLGSIASRFSMLAISDLLYLG 254 Query: 268 VAQLNIEQA 276 VA+ NIE+ Sbjct: 255 VAKNNIEET 263 >UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=Oxalobacteraceae RepID=A6T0F7_JANMA Length = 286 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 148/271 (54%), Gaps = 14/271 (5%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + + ++++E ++ +L+ L+ A I +A+ VSE +V+ + +GF G++ Sbjct: 6 IRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDGWQAF 65 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + L + + ++ D+V+KV N ++ T+++ ++ ++ + I +A + Sbjct: 66 KLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQALQVLG 125 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 +A + YG G S I AD QHKF R GV AY D HI ++ASLL++GDVV+ ++ G Sbjct: 126 RANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAISQRG 185 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-----CSPAPETPLLGRNASAR 254 + + +V+LA+ +GA I+ + S +P+A+LA +I P TP+ SAR Sbjct: 186 SSLSLLRSVQLARSSGAAIVVLAPS-GTPLAELATVLIPIDLHFHTDPYTPI-----SAR 239 Query: 255 ILQLTLLDAFFVSVA-QLNIEQAN--INMQK 282 + L ++D V +A +L+ E+ +N QK Sbjct: 240 LAHLVVIDILAVGLALRLSPERRKKMLNAQK 270 >UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseriaceae RepID=D0W145_NEICI Length = 315 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 6/256 (2%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E ++ E L A+ ++AE +VS+ +++ + LG+ G + AL S Sbjct: 16 ERKVAECALAKPKWFVHAAVAEIAEHSSVSQPTVIRFCRSLGYKGLPEFKLALSA--SIG 73 Query: 91 EQVLP---SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 + +P EL D+ VV KV +++ + + E+ A AR+ + Y Sbjct: 74 HEGMPYVHEELNADDDMSSVVEKVLGNAAASLLGERRFLKESELENAIATLMHARRVEFY 133 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G G S + D QHKF R G+ AY D H +M+AS+L DV++ ++++G + ++ A Sbjct: 134 GVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSSEDVLIAISNTGSSIELLDA 193 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 V +AK+NGA II +T + SP+A++AD ++ E L +R+LQL ++D + Sbjct: 194 VSIAKENGASIIALTRN-ESPLAQMADCVLSIATQENAELYTPMVSRLLQLAVIDILAIG 252 Query: 268 VAQLNIEQANINMQKT 283 +A + A++ +QK+ Sbjct: 253 LALRLGDAASLQLQKS 268 >UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016945F6 Length = 248 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 10/246 (4%) Query: 53 VAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELA-------FDEAPQ 105 +AE VSEA IV++S+ L G++ L+ + +QS L S LA D + Q Sbjct: 3 LAELAEVSEATIVRLSRSLNLKGYQELKLRIAADLAQS---LNSNLAESYQEIHMDASSQ 59 Query: 106 DVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLR 165 +V + + +R+I + S++N+ E+ RA AR+ L+G G S I D + K R Sbjct: 60 SLVESISHNNMRSIQDTMSVLNIKELDRAIEVLGGARKITLFGIGASAVIAQDFKQKLTR 119 Query: 166 IGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSY 225 I C+A D A+ LQE D VL +++SG T D+ A++ AK+ GA +I +T Sbjct: 120 INRWCEAAYDFDSQATLAANLQEKDAVLGISYSGNTQDILLAMQAAKERGATLISLTKFG 179 Query: 226 HSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 H+P+A+ A + + + E + ++RI QL ++D +V +A+ N E+ + ++ T Sbjct: 180 HNPVAEQAHIRLFTSSLEKSIRSGAMASRIAQLNVIDILYVGIARQNYEENILALENTRK 239 Query: 286 IVDFFS 291 V + Sbjct: 240 AVKMMN 245 >UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIM2_KOSOT Length = 283 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 134/269 (49%), Gaps = 16/269 (5%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 ++ T+ E +I +++K ++ +V++ L VSE IV+ + LG++GF + AL Sbjct: 15 KDSFTKTEKKIATFVVKNPQKVVYMSLTEVSDILKVSEGSIVRFCQKLGYTGFHPFKIAL 74 Query: 84 -----EDYFSQSEQVLPSELAFDEAPQDVV---NKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++ FS SE FD +D+ N V + I ++ + + Sbjct: 75 AVSENQESFSSSE--------FDFNSRDLSSLKNYVAQRHIDVIKNTSEFISEEILEACV 126 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 AR + G G S D +KF+RIG+ C+ DAHI M AS L+EGDV+L + Sbjct: 127 EKILTARTILISGVGASGNTAHDAFYKFMRIGLNCKTSHDAHIQAMIASELREGDVLLAI 186 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + SG T ++ ++A+K GA +I IT SP+A+ A +++ +P E+P ++I Sbjct: 187 SQSGSTLEIVDIADIARKGGATVIAITGYARSPLARFAHHVLLTPTRESPFESGALRSKI 246 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTG 284 QL +L+ F +V E+ +++T Sbjct: 247 AQLYVLELLFTAVFHRMEEKGRKFIERTA 275 >UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PDB4_BACCO Length = 283 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 12/245 (4%) Query: 30 NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ 89 E +I +++L+ I VA+ L V++A + + K +GFSGF+ L+ AL Sbjct: 24 KERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSGFQALKIALA----- 78 Query: 90 SEQVLPSELAFDEAPQDVVN------KVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 +E P + DEA +D N KVF + T+ + +N +H A + +A+ Sbjct: 79 AEAARPGK-NMDEAVKDTDNEKAVAIKVFESNIETLQDTIHTLNQKHLHEAVEWICRAKH 137 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 YG G ++ I D KFL+ + AY D H+ ++SA+ + DV + ++H+G + Sbjct: 138 IVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFISHAGADKE 197 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 + ++ +K GAK I IT SP+++ AD + + + E + SARI+QL+L+D Sbjct: 198 MLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPLFTVSQEADFRFSSFSARIVQLSLIDT 257 Query: 264 FFVSV 268 +V+V Sbjct: 258 LYVNV 262 >UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=Bacteria RepID=D1AUV3_STRM9 Length = 272 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 133/255 (52%), Gaps = 7/255 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 ++ E ++ ++++K + C + ++ + + VSEA IV+ K +GF GF + + Sbjct: 14 FSKQEIKVADYVIKEKDAICFMPLHEITKKINVSEATIVRFVKKIGFKGFIDFK------ 67 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 + ++ E + + N +NI + TI ++++N +++ A +++ + Sbjct: 68 LEVAREIATIEDERNTKEHYIENIEYNI-IETIKNTKNLINKEDVENAIEAIENSKKLYV 126 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G G S + Q++F+R G + D H +M AS E DV++V++ SG T D+ Sbjct: 127 FGMGASGVAALEFQNRFMRFGKIGHSVSDGHFQVMYASTTTEKDVIVVISLSGETVDLIY 186 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 + +AK+NG KII IT+ SPIAKL+D +I + ET L G +++ QL ++D Sbjct: 187 PLSIAKENGCKIIAITNYILSPIAKLSDIVILTSGKETLLNGGALVSKMSQLYIIDVLAT 246 Query: 267 SVAQLNIEQANINMQ 281 A N ++A + Q Sbjct: 247 GYALRNSKKAKLVRQ 261 >UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH25_PETMO Length = 283 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 135/259 (52%), Gaps = 12/259 (4%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAP-AIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +L + T++E ++ E++L I ++A SEA I + K GF F+ Sbjct: 7 FLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGFETFQ 66 Query: 78 NLRSAL-----EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 + + L ED F + + + + +++PQ+++ KV +L++I SI++++ Sbjct: 67 DFKLTLALDNNEDIFEEEKDIT---IFKNDSPQEILRKVKLGSLKSIESTTSILDINNFL 123 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +AA F A++ ++YG G S+A+ +Q+K R+G A D H+ +SA+ L GD+ Sbjct: 124 QAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLNFGDLA 183 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL---LGR 249 + ++ SG T D ++ +AKK+GA I +T +SPI K +D ++ + E P+ GR Sbjct: 184 IGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTSAGR 243 Query: 250 NASARILQLTLLDAFFVSV 268 + +I + +L S+ Sbjct: 244 SILVQIFAVEILSGLLYSI 262 >UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus lactis RepID=Q02VU4_LACLS Length = 282 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 129/251 (51%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L +R + +++++ I ++L+ + + +I++ A+ VS A I + SK +GF+ Sbjct: 5 LISRIRSYYDNLSKSDQAISDYLIANIDSAAMLSIQEFAQKTQVSTATISRFSKKIGFNS 64 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F+ L+ A+ S + SEL+ + ++++ K FN + ++ ++++ ++ + Sbjct: 65 FQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLDQTM 124 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 +A +G GGSNA+ HKFLR+ + C + D H M A+ L D V+ Sbjct: 125 EILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDCAFVI 184 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +H+G+ D VE+ K G II +T SP+AK AD + S + E ++ + Sbjct: 185 SHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAVASTV 244 Query: 256 LQLTLLDAFFV 266 Q++LLDA F+ Sbjct: 245 SQISLLDALFM 255 >UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HWK5_9FIRM Length = 297 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 139/267 (52%), Gaps = 10/267 (3%) Query: 23 KQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSA 82 K+ T+ E+ E+ LK + I +VAE S A I K K LGF G+++ + Sbjct: 24 KKSTFTKTENFYAEYFLKLDDEILNKTISNVAEETESSTASIFKFIKKLGFKGYKDFQLN 83 Query: 83 LEDYFSQS--EQVLPSELAFDE--APQDVVNKV--FNI-TLRTIMEGQSIVNVDEIHRAA 135 L +++ + +L + + +E +P ++ NK+ FNI ++ T+ E I N+ Sbjct: 84 LATNINKNSDDSLLTAITSVNENDSPDEIANKIMAFNIQSMYTLKED--IKNI-PFESCL 140 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 ++++ +G GGS I D HKFLR D+H+ + + + + + D + V Sbjct: 141 NLIKKSKKIHFFGMGGSATIAYDSYHKFLRTKYMVNYISDSHMQLSACTKMDQNDCIFVF 200 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSGRT +V ++AKKN AKII +T + S + K++D + P+ E+ + +ARI Sbjct: 201 SHSGRTLEVIEVSKVAKKNKAKIIALTGNPKSEMVKISDEAMILPSIESEHGTESLNARI 260 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQK 282 L LT++D +S+ N+E+ M+K Sbjct: 261 LYLTVMDILLISLMYDNVEENKKYMKK 287 >UniRef50_P26833 Uncharacterized HTH-type transcriptional regulator CPE0189 n=15 Tax=Clostridiales RepID=Y189_CLOPE Length = 279 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 T++E ++E++ + +I +A+ V EA I + +K LGF+GF++ + L Sbjct: 15 TKSEKTLIEYIKSDLDNIIYKSISIIAKESGVGEATITRFTKKLGFNGFQDFKVTLAKEI 74 Query: 88 S--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 S ++ ++ + DE+ + NK+ ++ + + +++D + + A++ Sbjct: 75 SNKKNTSIINLHVHRDESVTETANKMLKSSINILEQTVKQIDLDLMCKCRDLIMNAKRVY 134 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 G G S D+ +KF+RIG D+H M++ +S+ + DV++ +++SG T +V Sbjct: 135 FIGIGYSGIAATDINYKFMRIGFTTVPVTDSHTMVIMSSITNDDDVIVAISNSGTTKEVI 194 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 V+ AK+NG KII +T +P+ KL+DY + + ET + S++I Q+ LLD + Sbjct: 195 KTVKQAKENGTKIITLTEDSDNPLRKLSDYELTYTSAETIFETGSISSKIPQIFLLDLLY 254 Query: 266 VSVAQ 270 V + Sbjct: 255 TEVIK 259 >UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C77F Length = 277 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 2/256 (0%) Query: 21 RMKQEGMTENESRIVEWLLK-PGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 R+K+ +TE E I +++++ P + A+K + E S A +V+ +K LG+SGF L Sbjct: 6 RIKEASLTETEKEIAQYIIEHPEQVLDDSAMK-LGEKTHSSSAAVVRFAKKLGYSGFPQL 64 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + L S + + L DE ++NKV + + TI + +++ + + Sbjct: 65 KIELAKDLVGSIPEVDNLLHPDEDMATLMNKVHHSQIVTIDKTYHLLSASTLEDVVKALE 124 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 QA+ L+G GGS +C D HK +RIG YPD H+ M S + E D+ + V++SG Sbjct: 125 QAKHVYLFGVGGSAIVCDDFIHKLMRIGKYACFYPDVHLQMTSVPNMTEEDLAIFVSYSG 184 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T + A + AK+ + IT S ++ + KL D+++ P+ E L S+R L Sbjct: 185 ETKGIVTAAKWAKEMNIPSVAITQSAYNKLGKLVDHVLTIPSQEQSLRIGAMSSRYSSLI 244 Query: 260 LLDAFFVSVAQLNIEQ 275 ++D + + + N E+ Sbjct: 245 VVDLLYYGLVKRNKEK 260 >UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I8T9_9ACTO Length = 312 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 26/260 (10%) Query: 46 CAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL---------RSALEDYFSQSEQVLPS 96 C+ A ++ S+A + + + +G +++L R + D+ S + Sbjct: 56 CSAA--ELGRRTGTSQATVTRFCRAIGLESYQHLLIELAQERGRGEVSDWGS-------A 106 Query: 97 ELAFDEAPQDVVNKVFNIT----LRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGS 152 E+ D +P D + +V + LR I + +++D + RAA+ +AR+ D+YG GGS Sbjct: 107 EIGPDISPDDSLERVVQVVGSADLRAIQQTIERIDLDALERAAQALAKARRIDVYGVGGS 166 Query: 153 NAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAK 212 A+ + + + RIG + + + + H SA+LL DV + ++HSG T + E+AK Sbjct: 167 GAVAQETETRLFRIGCQVRGWTEVHGAATSAALLTPADVAIGISHSGATRETLEPFEMAK 226 Query: 213 KNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLN 272 + GA I IT SP+AK AD + S ET + R L ++D +V V Q+ Sbjct: 227 ERGATTIAITTDPRSPLAKAADIRLISATSETSFRTGSIGGRHSVLMIVDCLYVRVGQVA 286 Query: 273 IEQANINMQKTGAIVDFFSP 292 ++A+ ++ A+ D +P Sbjct: 287 YQRASASL----ALTDHITP 302 >UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLH9_PECWW Length = 320 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 3/253 (1%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL- 83 G+++ I ++L+ ++ +K +A + VSEA IV+ K +G++G L+SAL Sbjct: 45 HGLSDTNQTIANYVLQNPSMVAQLPVKKLAVEIGVSEATIVRFCKHIGYAGLLELKSALN 104 Query: 84 EDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQA 141 + F S+ LP ++ ++ DV K+ R + E ++++ I++ F A Sbjct: 105 RELFDDSDLSLPVTPDILMNDTRHDVAQKIALTVDRAVKETIDLIDMQTINQIVSLFISA 164 Query: 142 RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 R+ G G S + + K RIG+ A+ D M + + L+ D+V+ +HSG T Sbjct: 165 RRVMFIGFGASGLAALEARDKMNRIGIDSDAFTDRFSMTLKLANLKPDDLVVAFSHSGET 224 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLL 261 +V A +LA+K GA + ITHS HSP+ L +Y++ + G + R+ QL ++ Sbjct: 225 PEVVNAFKLAEKAGATRLAITHSTHSPLTSLGNYVLLTCGESERYQGDSIGTRVSQLFMI 284 Query: 262 DAFFVSVAQLNIE 274 + + + N + Sbjct: 285 EFLCTELTKQNFK 297 >UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9W4_9FIRM Length = 280 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 139/279 (49%), Gaps = 5/279 (1%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 A+PN + L+ L Q +T E +I +++ K +I ++AE V++A + + Sbjct: 2 AIPN-VLLSMQLSYNQ--LTRTEKKIADYVQKNAQKVLFMSITELAEECHVADASVHRFC 58 Query: 69 KLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 + +G G++ + L + SE + P + +V L I E +++ Sbjct: 59 RTIGAKGYQEFKMWLSINMGHEKGEEESEEEDGKEP--IFQQVLKSHLEAINETNQLLDK 116 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 +++ +A R +ARQ +G G S + +KFL + + D H+ M+AS++ E Sbjct: 117 EKVDQAVRMLTEARQIMFFGVGDSKTAAIEANNKFLHVTPKVMCAGDTHLQAMAASMMTE 176 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 D++ VV++SG T D ++AK+ GAK+I IT SP+ + +D ++ + E PL G Sbjct: 177 EDLLFVVSYSGSTKDTVEVAQIAKEAGAKVISITRFLKSPLTEFSDCVLICGSKEGPLEG 236 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + A++ QL ++D + + N ++A N QKT V Sbjct: 237 GSMGAKLSQLHIIDILYQCYFKANGKKARENRQKTANAV 275 >UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MLD6_SALAR Length = 293 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 131/256 (51%), Gaps = 3/256 (1%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE-D 85 + E +++I ++L+ L +K +A+ + VSEA IV+ K +G+ G NL++ L+ + Sbjct: 19 LGETDAKIAGYILQQPGLVVQFPVKKLAQEIGVSEATIVRFCKKVGYGGLLNLKADLKRE 78 Query: 86 YFSQSEQVLPS--ELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 ++++ LPS ++ D++ DV K+ + E ++++ + F AR+ Sbjct: 79 LLAENDLSLPSSPDIFLDDSRNDVAQKIALTIETSARETIGLLDMKIVKPVVERFLSARR 138 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 G G S + + K R+G+ A+ D M + + L+ D+V+ +HSG T + Sbjct: 139 VMFVGFGASGLAALEARDKMNRLGIDSDAFTDRFTMTLKLANLKRDDLVVAFSHSGETPE 198 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 V A LA+K GA + ITHS HSP+ +LA+ + P+ G + S RI QL +++ Sbjct: 199 VVNAFRLAQKKGAYTLAITHSPHSPLNELANTFWLTSGEAGPMQGDSISTRISQLFIIEF 258 Query: 264 FFVSVAQLNIEQANIN 279 + + N+ + + Sbjct: 259 LCTEITRHNLRDSGMT 274 >UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=Burkholderiaceae RepID=Q3JNN8_BURP1 Length = 339 Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 1/252 (0%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 P + + + +E ++ +++L ++ ++A S+ I + + LG SGFR Sbjct: 10 PRIETIRAQLRPSERKLADFVLAAPREVLDLSMTELAARAGASQPTIARFCQALGCSGFR 69 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + L + + ++ DE ++ KVF+ T+ ++E ++ ++ + A Sbjct: 70 EFKIRLAQSVAPGVASVYRDVEPDERAPGIIGKVFDRTIGALIEVRNSLSATSVAEAIEL 129 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +A + + YGAGGS D+QHKF R+GV AY D H MSA+LL DVV+ +++ Sbjct: 130 LTRASRIEFYGAGGSGIAAQDIQHKFFRLGVPSVAYSDPHTFSMSAALLGANDVVVAISN 189 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 +GRT D+ A A GAK+I ITHS HSP+A+L+ + S E + ++R+ Sbjct: 190 TGRTRDIVDAARAALACGAKVISITHS-HSPLAQLSTVSLASNVAEETDVFSPMTSRMSH 248 Query: 258 LTLLDAFFVSVA 269 L + D V VA Sbjct: 249 LAIGDILAVGVA 260 >UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK55_BACSK Length = 268 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 141/260 (54%), Gaps = 18/260 (6%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +++ ++ E RI ++++ IKD+A +VS A I + + +G + F Sbjct: 8 IQVNYHALSAAEKRIADYVMSAPEELANIHIKDLAAKCSVSVATITRFCRKVGAANFVEF 67 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + ++ D E+ +++ ++ +I I + ++N D+I +AA Sbjct: 68 KMSVRDSIRTEEE-----------GGELIAEMESIYKAIIGGSRELINQDDIVQAATLLE 116 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A + ++YG G S +++ + +R+G+R + D+H M+M+ASLL DVVL +++SG Sbjct: 117 NANRIEIYGIGSSGLSGQEMKFRLMRMGMRVDCHIDSHTMVMNASLLTAADVVLAISNSG 176 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR---NASARIL 256 T D++ AV LAK+NGA +I +T+ H+P++++AD ++ S +P+ P R NA I+ Sbjct: 177 HTVDIQEAVALAKENGATVILLTNHEHTPLSEMADLLLLSFSPK-PFYARGFLNAQLSIV 235 Query: 257 QLTLLDAFFVSVAQLNIEQA 276 +LD + +AQ N E+A Sbjct: 236 H--VLDLISLVLAQ-NEERA 252 >UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788119 Length = 278 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 130/257 (50%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR + + +E ++ ++L+ ++ D+A S+A IV++ K +GF G+++L Sbjct: 8 LREVYDSLNPSERKVAAFILQEPAEMIQMSVADLAVRSGSSQAAIVRLCKTMGFKGYQDL 67 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + + + ++ +++ ++ V N +++I + I+ + A Sbjct: 68 KLKVAGDLQEPLATGYQDIRPNDSISAIIQNVSNNNIQSIRDTMKIMEEGMVEEAVLALD 127 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 Q+++ ++G G SN I D Q KFLRI C ++PD H+ + SA LL D + +++SG Sbjct: 128 QSKRIFMFGVGASNLIGMDAQQKFLRINKVCISFPDPHVQLTSAVLLTPDDAAVCISYSG 187 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T +V A +AK+ G K I IT S +++ D + + + E + S+RI QL Sbjct: 188 ETDEVIRAAAIAKEKGCKTIGITKYGDSTLSRSVDIPLYTSSTENEIRSGAMSSRITQLN 247 Query: 260 LLDAFFVSVAQLNIEQA 276 L+D ++ VA N E + Sbjct: 248 LIDILYLGVASRNYENS 264 >UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQA6_9CLOT Length = 290 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 139/278 (50%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 L +G+G ++ ++ +I ++++ + + + +AE+ VSEA +V+ + Sbjct: 8 LQSGMGCTERIQATYSALSGASKKIADFVIDHPDQAVHMTVVQLAESCEVSEASVVRFCQ 67 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 L ++GF + +L + Q++ ++ ++ ++ KVF + + E ++N Sbjct: 68 CLQYAGFYEFKLSLAAEIVPASQMIQEDITVEDTEPTILEKVFAGEQQALQETLQMLNRQ 127 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A + + + + G + I D ++ LR G+ + D + ++ AS+L+ G Sbjct: 128 DFISAVNHIAFSNKVEFFSCGNARPIAQDAHYRLLRTGIDSRIGIDDYDCLIHASMLRTG 187 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++HSG T + +E AKKNGA ICIT +PI +++D + S + ET Sbjct: 188 DVAIGISHSGSTKNTIKMLEEAKKNGATTICITGMEKAPITRVSDICMVSHSKETMFRSM 247 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++RI Q+ ++DA V+V+ E++ + T I+ Sbjct: 248 AMASRIAQMAIIDALVVAVSFKRFERSKQYLTLTDKIL 285 >UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDH7_9FIRM Length = 281 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 117/227 (51%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 L+ Q +T++ + E+L++ + +I +A V+EA + + + LGF G+ + Sbjct: 9 LQQHQGDLTKSGRTVAEYLVQHAAEAQYLSISSLARECQVAEATVFRFCRALGFEGYHEM 68 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 R AL + V E A D + + + I Q+ ++ + +A + Sbjct: 69 RIALAQANATGVLVNQQEPAPDADTATLCEHASALFMTAINGTQNALSPQAVDQAVALLH 128 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 ARQ G GGS A ++ +F I + +A D+H+ +M+ASL+ E DVVL V++SG Sbjct: 129 SARQVFCMGQGGSMAAAKEICARFACITNKFRAVADSHMQVMAASLMTEQDVVLFVSYSG 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 T D+ + AK NGAKII ITH SP AKLAD ++ A E+PL Sbjct: 189 ATRDLMETLRTAKANGAKIILITHYEDSPGAKLADIVLLCGAQESPL 235 >UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales RepID=D1PSB4_9FIRM Length = 282 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 130/272 (47%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N LR + +T + R+ ++L + + +I +A V+EA I + + L Sbjct: 2 NSCNFWELLRSRYSELTRSGRRVADYLTRHAEEAQYLSISSLAAECGVAEATIFRFCRSL 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF G+ ++ +L + +L + + L I +S++N + I Sbjct: 62 GFDGYNEMKISLAQANAIPTAAGADKLEPGADTATLCTHASAVALEAINGTRSVLNPEAI 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 AA +ARQ +G GGS + D+ +F + + + D+H+ ++ASL+ DV Sbjct: 122 DAAATLLQRARQVFCFGQGGSQILANDIWARFATVSTKFRTAGDSHMQTIAASLMVPEDV 181 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 VL +++SG T D+ + + K NGAK+I +TH +P LAD ++ A E+PL G + Sbjct: 182 VLFISYSGSTRDMMETLRIVKGNGAKVILLTHYADAPGTALADVVLLCGAKESPLDGGSI 241 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 +A+I L + + + N E A I ++T Sbjct: 242 AAKIAVLFVAEVLVLRFTLDNQELAAIARERT 273 >UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=Actinomycetales RepID=A8LV24_SALAI Length = 320 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 5/279 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ +R + +T R+ E +L + I ++AE S A I + + +GF Sbjct: 32 GVLARVRAGADDLTGALRRVAEHVLSDPEAAARATIVELAERSGTSPATITRFCRAMGFE 91 Query: 75 GFRNLRSALEDYFSQSEQV-LPSELAFDEAPQD----VVNKVFNITLRTIMEGQSIVNVD 129 G+ +LR + ++ ++ + P D V++++ R + + +++++ Sbjct: 92 GYADLRLGIAAETGRARLAGWTVDIGREIQPGDPLRRVLDQIIAADTRAMHDTAALLDLA 151 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ RAA A + +++GA GS + ++Q RIGV A+ D H + SA+LL+ G Sbjct: 152 EVERAAVAIAGASRVNIFGASGSALVGEEMQFMLHRIGVAAWAWSDVHEGLASAALLRVG 211 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV L V+HSG+T + + A GA + +T SP+A+LAD + + + T Sbjct: 212 DVALGVSHSGQTRETIEMLAEAGSRGATTVAVTGFPRSPLAELADIALLTASRATTFRPD 271 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 SAR QL +LD +++VAQ ++A+ +++T VD Sbjct: 272 ALSARHPQLVVLDLLYIAVAQRTHDRAHAALRRTAQAVD 310 >UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TJ91_CLOBB Length = 285 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 125/240 (52%), Gaps = 2/240 (0%) Query: 31 ESRIVEWLLK-PGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ 89 E ++ +++L+ P N+ +I ++AE SEA + ++ LG+ G+++L+ L + Sbjct: 24 EKKVAQYVLENPKNI-IHFSITELAEVSKASEATVFRLCSKLGYKGYQDLKINLAGSVIE 82 Query: 90 SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGA 149 + E+ ++ ++ K+ + + +I I +++ +A A++ +G Sbjct: 83 PIDNIYEEVKENDDTYIIMRKIMSSNINSIESTLKINKTEDLDKAIAIILNAKKIMFFGM 142 Query: 150 GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVE 209 GGS I D HKF+R G+ C A D+H +M +S+ GD ++ ++SG ++ + Sbjct: 143 GGSWTIANDAYHKFIRTGIDCVASCDSHWQVMFSSMANSGDAIIAFSNSGSNKELVENIN 202 Query: 210 LAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVA 269 LAKK G KII IT + SP+AK++D + + E+ +R+ L ++D +V VA Sbjct: 203 LAKKRGIKIIAITGNEKSPLAKISDLHLIAYGNESMFRSEAMESRLTSLMIVDWLYVGVA 262 >UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n=22 Tax=Gammaproteobacteria RepID=A4TMJ1_YERPP Length = 292 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/271 (26%), Positives = 132/271 (48%), Gaps = 18/271 (6%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 Q +T + RI ++L +I D++ EA I++ + LG+ GF++ + L Sbjct: 21 QNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKGFQDFKMDL 80 Query: 84 EDYFS---QSEQVL--------PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 + SE L LA Q +N V + TL ++++++ + Sbjct: 81 AIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETL-------NLLSIESVE 133 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + + A + ++G G S D + K +RIG+R A + H M M ASL+ GDV Sbjct: 134 QVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMNPGDVA 193 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++HSG +++ A++LAK+ GA + +TH+ S I +LADY++ + + L G + Sbjct: 194 IGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQGDSIG 253 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 +I QL +LD + + + + QA +KT Sbjct: 254 TKIAQLFVLDLIYALLVKADPAQAESIKRKT 284 >UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ALE3_SEBTE Length = 282 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 130/255 (50%), Gaps = 2/255 (0%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 ++ T +E+++ ++ K I++++ A+ E I++ K GF G+ + + +L Sbjct: 16 KKSFTASETKVFNYIEKNPESVVRMNIRELSNAIDTGETTIIRFCKKTGFKGYNDFKISL 75 Query: 84 EDYFSQSEQVLPSELAF--DEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQA 141 S+ +Q ++ DE + ++N + + + S++N + + + A Sbjct: 76 ISSLSKEKQSNKYKIDILADENYNSIAEGIYNNSFNVLKDTLSLINNEILDKCINLINNA 135 Query: 142 RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 + + G G SN D ++KFLRIG ++ D H+ M+AS+ DV++ ++ +G T Sbjct: 136 KHIEFIGIGHSNLTAQDAKYKFLRIGKSVASHSDPHLFKMAASISDREDVIIGISQTGET 195 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLL 261 +V +++ AK GAK I IT++ + I K ADY++ + E L + S RI QL ++ Sbjct: 196 REVIDSLQSAKVRGAKTIAITNNDKTEITKYADYVLLNGFNEELLETGSFSERISQLFII 255 Query: 262 DAFFVSVAQLNIEQA 276 + ++ V N ++A Sbjct: 256 ELLYLGVLSKNKDKA 270 >UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n=4 Tax=Firmicutes RepID=A8FIY5_BACP2 Length = 286 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 128/253 (50%), Gaps = 7/253 (2%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 ++R ++ + +I ++L+ +I +A SE I + + +G+ ++ Sbjct: 12 HIRTTFHSLSPTQKKIANYILENPQKVVLHSISALASECNTSETTIFRFLRKIGYESYQV 71 Query: 79 LRSAL-EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 R + +D + + Q + E+ ++ D+ +KV +T +I + + IV E H +F Sbjct: 72 FRVHVAQDIATNTPQSIYGEIEASDSVADIKHKVIELTTNSIQDMKHIV---EDHAVTQF 128 Query: 138 FYQARQRD---LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 Q +Q +GAG S+ I D HKFL++G D H+M M A+ E D ++ Sbjct: 129 IEQMKQAHKTVFFGAGASSFIAGDAYHKFLQLGFDVSLCSDPHMMNMIATHATEHDFIVA 188 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG + ++ AV+ AK+ GAKI IT S +AK +D+ + S + ET + +R Sbjct: 189 ISHSGESREILDAVQFAKEKGAKIASITSYPKSELAKRSDFHLLSSSRETTYRSDSMISR 248 Query: 255 ILQLTLLDAFFVS 267 I QL ++D +V+ Sbjct: 249 INQLVIIDVLYVA 261 >UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C246_9CLOT Length = 292 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 7/265 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + NG + R +T E R+ E++L ++K +A EA IV++ K Sbjct: 4 IENGRNILATTRFLLPSLTAAEKRVAEFVLASPKEVTRMSLKKLAVRCECGEATIVRLCK 63 Query: 70 LLGFSGFRNLRSALEDYFS----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 +G SG+ L+S LE + E V L+ + ++V +VF + + + + Sbjct: 64 TIGVSGYAELKSLLETQLQLPAVKEESV---RLSTGQGMGEIVARVFELNILNLRRTLEV 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 V+E A A + + G + C+ +F RIG C A DA + +++A Sbjct: 121 AAVEEYENACEVLSTANKICFFAIGDAMFPCSYASLRFRRIGYDCYADSDADVQIVNACN 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 ++EGDV + ++HSGRT V A+ +AK GA ICIT + S + K +D ++ + +T Sbjct: 181 MKEGDVAIAISHSGRTKQVVEAMRIAKSRGAVTICITKAGKSELTKYSDIVLYNVTTDTT 240 Query: 246 LLGRNASARILQLTLLDAFFVSVAQ 270 + + R+ + +LDA ++ V Q Sbjct: 241 VDKEIIARRVAEQAMLDAVYMGVLQ 265 >UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax=Enterobacteriaceae RepID=MURR_SALAR Length = 287 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%) Query: 28 TENESRIVEWLL-KPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 TENE +I +LL G L + +++A+ L +S++ IVK ++ LG +GF LR AL + Sbjct: 15 TENEQKIATFLLAHVGELKTVSS-RNMAKQLEISQSSIVKFAQKLGANGFTELRMALIEE 73 Query: 87 FSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 S S + L S + +++ + + K+ + + E ++++ + + + Sbjct: 74 HSVSREKKRDKAVHLHSSITSEDSLEMMARKLNREKIVALEETYNLMDYERLEQVINLIS 133 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 +A + G GGS + D+ K ++IG R D H+ A L++GDV + +++SG Sbjct: 134 KAPLIQITGVGGSALVGRDLSFKLMKIGFRVACEVDTHVQATIAQALRQGDVQIAISYSG 193 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 ++ E A+K GA +I IT SP+ +LADY + + + ET + S R Q + Sbjct: 194 SKKEIVLCAEAARKQGATVIAITSLADSPLRRLADYTLDTVSGETEWRSSSMSTRTAQNS 253 Query: 260 LLDAFFVSVAQLN 272 + D FV + QLN Sbjct: 254 VTDLLFVGMVQLN 266 >UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Bacillales RepID=C6J1X3_9BACL Length = 289 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 127/255 (49%), Gaps = 9/255 (3%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 E ++ E ++ E++L+ I ++A A +S + + + K F GF + + L Sbjct: 13 ETLSPQERKLGEYILESPATVIHQGITELANACGISPSTVTRFCKTFHFKGFPDFKMKLA 72 Query: 85 DYFSQSEQVLPSELAFDEAP-----QDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + P+E + + Q +V + L +I + +++++++ RA Sbjct: 73 SELAHK----PAENHYQDIIAGNDLQKIVEAMEANHLASITDTTRLLDMNQLSRAVEALC 128 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 +A++ DLYG S+ + D K +RIG C A+ D+H+ + SAS L EGDV L +++SG Sbjct: 129 RAKRIDLYGVATSSIVAQDFYQKLVRIGKNCTAFADSHMQITSASSLGEGDVALAISYSG 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T + A+ AK +GA + +T + +A LAD + S + E + + ++RI QL Sbjct: 189 ETPETIDALRCAKDSGATTLSLTQYSSNSLASLADIALFSSSLEEGMRRGDMASRIAQLH 248 Query: 260 LLDAFFVSVAQLNIE 274 ++D F + L + Sbjct: 249 VIDILFTGMVSLEFQ 263 >UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A8S9N1_9FIRM Length = 321 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 144/282 (51%), Gaps = 17/282 (6%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR Q ++ E +I +++L+ + + I+D+A S + +V++ +++GF G++ L Sbjct: 41 LREVQPSLSSTERQIAQFILENPDETTTLTIRDLARRSFSSPSSVVRICRVIGFQGYKEL 100 Query: 80 RSAL--------EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 R AL E+ + + + P + + Q++V+KV + ++++++ Q ++ +DE+ Sbjct: 101 RHALTLELATLGENGSHREKDITPQD-----SLQEIVDKVTHKNIQSLLDTQRLLLLDEL 155 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + AR L+G G S + D KFLR+ C D+H ++ A DV Sbjct: 156 EQCVELIANARTVLLFGIGSSLCVAKDTYLKFLRLDKPCVVNEDSHSQLLQARNATAQDV 215 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 +V ++SG+T ++ ++ K GA +I +T Y S +A+LAD+++ A E+ Sbjct: 216 GIVFSYSGQTMEMIQCIKEMKAGGAPVIAVTRYYPSEVAQLADHVLYVAANESLFRNGAM 275 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 S+R+ QL ++D + + A N E + KT + PG Sbjct: 276 SSRLSQLNVVDILYTAYASRNHEDTMRRLTKT----HIYKPG 313 >UniRef50_C9XPJ9 RpiR-family transcriptional regulator n=5 Tax=Clostridium difficile RepID=C9XPJ9_CLODC Length = 250 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 11/252 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L + Q+ ++ NE ++ + LK IKD+A S A IV+ + LGF Sbjct: 1 MNLIDKLDINQKKLSTNEISLLNYFLKNSEKINQKKIKDIANETFNSTAYIVRFCQKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SG+ ++ L FS S + ++ F ++ D+ +M+ Q+++NV+ I Sbjct: 61 SGYSEFKNFL--VFSYSNRNERNK-EFTKSQSDI--------FTDVMDTQNLINVENIDM 109 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + ++ +G G S +C ++ +F IGV + Y D+ +M ++AS + + D+V+ Sbjct: 110 CLNEIHNSKHIYFFGVGSSRLVCTEMSQRFSAIGVNVKYYDDSTLMYLAASNITKDDLVI 169 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V+ SG T+ V A +AK N K+I +T+ + ++ +AD + +P+ N ++ Sbjct: 170 AVSMSGETAQVIKACNIAKTNQVKVISLTNISVNSLSNIADIKLFVSSPQYNFNSVNYTS 229 Query: 254 RILQLTLLDAFF 265 R+ L+L++ F Sbjct: 230 RVPALSLMEYMF 241 >UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=Gammaproteobacteria RepID=A0KFB6_AERHH Length = 286 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 ++ +E +I +++L + +++A+ VS++ IVK ++ +GF GF + A+ + Sbjct: 14 LSPSELKIADYILACPEQVTHFSSQELAQQADVSQSSIVKFTQKIGFKGFTAFKLAVSED 73 Query: 87 FSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + + L + + D+ + + K+ + +I+E ++ + R Sbjct: 74 LGRKHAIKTDNVGDLYNGIGRDDDLETMAKKLAQEKINSIVETTQALDNATLARVLDVIN 133 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 QA + L G GGS D+ +K L+IGV D+H+ + A L GDV LVV++SG Sbjct: 134 QAGRVQLVGIGGSALTAKDLWYKLLKIGVTTLFAQDSHVQISIAQTLGPGDVQLVVSYSG 193 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 + DV AA ELAK+NGA +I +T ++P+ ++AD ++ + A E L + S+R Q T Sbjct: 194 ASRDVLAAAELAKRNGATLIAVTSFRNTPLRQMADMVLDTVADENELRISSISSRTAQNT 253 Query: 260 LLDAFFVSVAQ 270 + D F+ + Q Sbjct: 254 ITDILFLGLVQ 264 >UniRef50_C9Q9L7 Helix-turn-helix protein RpiR n=6 Tax=Vibrio RepID=C9Q9L7_9VIBR Length = 281 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 135/250 (54%), Gaps = 8/250 (3%) Query: 29 ENESRIVEWLL-KPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE--- 84 +NE ++ + ++ + +LS A K V L +S++ +++ +K LG SGF +L+ L Sbjct: 17 QNEQKLSQLIVERQFDLSELSATK-VGALLGISDSSVIRYAKSLGCSGFPDLKLKLAAQA 75 Query: 85 -DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 +++ Q + + + ++ ++ K ++ + TI + +++ + + + A+ +A + Sbjct: 76 PQVMARTAQSVYASIETGDSTAQIIEKAKHLFVSTIEQSIGLMDAESVEQCAQQLLKANK 135 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 L G G S + AD+ HK +R G Q D HI ++ ASLL+ DV+LVV+ G T + Sbjct: 136 IALAGIGASAIVAADINHKLIRAGFNVQFNQDYHIQIVQASLLKADDVLLVVSARGNTQE 195 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYII-CSPAPETPLLGRNASARILQLTLLD 262 V A+E A++NGA++I +T +A+LADY+I S E LG + ++LQ+ D Sbjct: 196 VLTAIERAQQNGAQVIALTRYGRDKVAQLADYVIPYSYTEEHSQLGM-VTPQLLQMAAFD 254 Query: 263 AFFVSVAQLN 272 F + L Sbjct: 255 IVFFKLITLT 264 >UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillales RepID=Q02YU6_LACLS Length = 273 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 132/241 (54%), Gaps = 11/241 (4%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 ++ K E +T++E +I ++L + D+ +A+ V +A IV+ + LG+SGF +L Sbjct: 7 IKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGYSGFSDL 66 Query: 80 R--SALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + A E Y +S L FDE ++ + E +S +++++ ++++ Sbjct: 67 KIEVAKESYSQKSSNRTDLTLFFDENENSII--------EILHETKSKLDLEQFEKSSKL 118 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +A ++G G S D++ FLRIGV +A +H + +A+LL++ D+++ ++ Sbjct: 119 ISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISGSHFQLQTAALLKKTDLIIGISL 178 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG+T ++ ++++AK+ A+II IT S +SP+A+L+D I E G + + +I Q Sbjct: 179 SGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSD-INLQTVNEEFFDGGSLTGKISQ 237 Query: 258 L 258 L Sbjct: 238 L 238 >UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillaceae RepID=Q03CI3_LACC3 Length = 280 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 123/247 (49%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 L++ + ++ E ++ +L + + I ++++ VS A I + +K LG++ F+ L Sbjct: 8 LQIYKPNLSGQEKKLAAYLQAHPDHASQANISELSQLTGVSTATISRFAKALGYTNFQAL 67 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 R AL + + L +EL+ ++ + K+F + + + ++ D + +A ++ Sbjct: 68 RMALAQTSPEDDHALFAELSPKDSVDTLAQKIFTSNIDALRTTLANLDTDALTKAVKWIT 127 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A L+G G SN + D HKFLR + D H+ +M+A+ L D +++ +HSG Sbjct: 128 HAEHLGLFGLGASNLVALDGYHKFLRTAIPVAYAADYHMQLMAATHLGPRDAMILTSHSG 187 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 D A ELAKK +I IT S S + K+AD + A E+ A I +++ Sbjct: 188 EDKDAIALAELAKKQQVPLIVITGSPTSRLVKMADAAFVAVAEESRYRTEALHALIAEIS 247 Query: 260 LLDAFFV 266 ++D F+ Sbjct: 248 IMDTLFM 254 >UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=Clostridium RepID=A6LUR0_CLOB8 Length = 281 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 135/262 (51%), Gaps = 6/262 (2%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 Y++ + T+ E I ++L++ + + +D+AEA S +V+ +K +GF+ Sbjct: 6 YIKQNYDSFTDREKLIADYLIETKERIISMSARDIAEATKTSAPTVVRFAKKIGFNTLNE 65 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNI--TLRTIMEGQSIVNVDE--IHRA 134 L+ L S+ E+ + + + N ++ I ++ +IME Q++ +DE + +A Sbjct: 66 LKLKLSINISKEEEAGAIQFQYLDNDLGTKNIIYGIKQSVDSIME-QTVSLLDEECLDKA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A+ ++ G S + D +K R+ RC D H+ + S+ LL+EGDV L Sbjct: 125 IELLISAKNIYIFSVGVSGLVGQDFYYKLSRMNKRCICNTDTHLQITSSVLLEEGDVALA 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITH-SYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T +V V+ A+ +I IT S ++ IA ++D +I PA E + S+ Sbjct: 185 ISYSGETKEVIKCVKNARNRKVPVIAITKASVNNTIADISDIVIRIPAVEKSIREGAISS 244 Query: 254 RILQLTLLDAFFVSVAQLNIEQ 275 RI QL ++D ++ + + NI++ Sbjct: 245 RISQLAIIDMLYIGMIRNNIKE 266 >UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C448 Length = 286 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 129/252 (51%), Gaps = 9/252 (3%) Query: 27 MTENESRIVEWLLK-PGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED 85 + EN+ +I +++L+ P N+ + + +AE L VS++ IVK S+ +G G+ L+ AL + Sbjct: 14 LAENQRKIAQFILENPENVLNLSS-QQLAEILDVSQSAIVKFSQKVGVKGYPALKLALSE 72 Query: 86 YFSQSE-------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + + L + +A D+ V K+ +I E +++ + R Sbjct: 73 IIGRQQLKDGAPHSALHNRIAPDDNLMVVAQKLAMEKNHSITETTKLIDFKQFERIVERI 132 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 Q+++ + G GGS D+ +K +IG+ D H+ + +A L DV +V++ + Sbjct: 133 DQSQRVQIVGIGGSGLTAKDLSYKLQKIGITTLVESDHHVQIAAALTLNTHDVQIVISFT 192 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 GR D+ A +A+K GA +I IT SP+ +LADY++ S A E + S+R Q Sbjct: 193 GRRKDMLTAANIARKQGACVIAITRDCDSPLGQLADYVLESIAEEDEWRSSSISSRTAQN 252 Query: 259 TLLDAFFVSVAQ 270 TL D F+++ Q Sbjct: 253 TLTDLIFMALLQ 264 >UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=Q2G836_NOVAD Length = 296 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 121/232 (52%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 M++ ++I ++++ +I D+A + SE ++ + +G GF++L+ +L Sbjct: 31 MSKTAAKIAAYVVEHPADVVGMSITDLAALVDASEGSVINFCRSIGLGGFQHLKLSLAQE 90 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 Q + +L +++ + V KVF+ ++ + + S+++ + A AR+ ++ Sbjct: 91 IVQPVHFIHEDLEREDSTETVCRKVFHSGIQALRDSLSVLDPKAMAAAVDIIRAARRVEI 150 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 YG G S I D ++ LRIG+ + D+H+ +SAS + VL ++HSG T++ A Sbjct: 151 YGIGSSAPIAEDAHYRLLRIGLDARVVIDSHVQAISASRCDKDVAVLTISHSGSTNETVA 210 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 A LA + GA+ I IT+ SPI AD ++ + A ET ++RI QL Sbjct: 211 ATRLAHEAGARTIVITNFGRSPIQAYADVVLFTMARETRFRTEAMTSRIAQL 262 >UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EB66_BRASB Length = 270 Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 122/239 (51%) Query: 49 AIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVV 108 +I +VAEA VSE IV + +G GF+ L+ L + +++ +L + P V Sbjct: 27 SITEVAEACDVSEGTIVSFCRRVGVRGFQELKIMLARDLIEPVRLIQEDLHRGDDPATVT 86 Query: 109 NKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGV 168 + +F ++ E + +++++ + A R +A++ ++YG G S I D+ ++ L++G+ Sbjct: 87 DHIFAAHAASLQETRRLLSMEALAEATRLLREAQRIEIYGIGSSAPIAQDLSYRLLQLGL 146 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 A D+H+ +SA + G + V+HSG T + A LA+ GA+ I IT SP Sbjct: 147 AANAIVDSHVQAVSAGMTGPGVATVTVSHSGSTVETVLATRLAQAAGARTIGITRLGKSP 206 Query: 229 IAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +A + ++ + A ET S+R+ QL ++D A + E++ +Q I+ Sbjct: 207 LAAHCEVLLYTVANETRYRPEAMSSRVAQLAIIDTLVSCCALTDTERSVGRLQHAARIL 265 >UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C511 Length = 286 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 75/281 (26%), Positives = 136/281 (48%), Gaps = 19/281 (6%) Query: 10 LPNGIGLAPYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALA----VSEAM 63 L G + Y+R+K+ + T E I E++L+ ++D A+AL S A Sbjct: 3 LIGGDHMNAYIRIKEYNDSYTATEKLIAEYILEN------DILQDSAQALGEKTNTSAAA 56 Query: 64 IVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD----VVNKVFNITLRTI 119 I++ SK +GF GF +L+ L ++ E+ +L F+ P+D +V K + + T+ Sbjct: 57 IIRFSKKIGFKGFSDLKMNLAQS-TKEEKQQEVDLIFE--PEDNISTLVEKGCRLNMNTV 113 Query: 120 MEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIM 179 ++ ++N+D + + A L+G GGS+ I D+ K +RIG + D H+ Sbjct: 114 LKTYQLINIDTLEESIDLLNNASTIYLFGVGGSSVIGLDIYQKLMRIGKKVIYNADLHVQ 173 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS 239 M A + + D L++++SG T+ + + + +I IT +PI+KL+ Y + Sbjct: 174 MTFAQSMDQNDAALIISYSGSTTGLVDVARVLHEKQIPVISITQINANPISKLSTYSLKV 233 Query: 240 PAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINM 280 P+ E L S+RI + D + V + N E+ N+ Sbjct: 234 PSEEKALRIGAVSSRISSFVITDLLYYGVFKKNFEEHKKNL 274 >UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q61_LACBA Length = 286 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + ++ E ++ + L + IK++A A VS A I + K + ++ +R Sbjct: 9 IRGTYDQLSRTEKKVAQMALNTPAVVSEMTIKELASATGVSTATISRFVKRMDYANYREF 68 Query: 80 RSAL-----EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 AL ED + + P ELA ++ + NK F+ T+ ++ ++ ++ RA Sbjct: 69 TMALAHLAIED-GGEHQSSFP-ELAEGDSLATIANKTFHYTISSLEATNEALSEKDLARA 126 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A + +G GGS+ D HKFLR + YPD I +M A+ L + D +V Sbjct: 127 VLKLINAEKVTFFGLGGSSIAALDGYHKFLRTALSVTYYPDFDIQLMQAARLSDQDCAVV 186 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSGR S+ VE ++N II IT SP+A+ AD S E + Sbjct: 187 ISHSGRNSETLQVVEELQRNDVSIIAITSYSGSPLAQAADVTFLSLTDEVNYRSEGMYSL 246 Query: 255 ILQLTLLDAFF-VSVAQLNIEQANINMQKTGAIVD 288 I QL +LD F ++V +++ N+ M K +++ Sbjct: 247 ISQLAILDTLFMMTVLRVSSRTGNV-MTKVHDVIE 280 >UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEV7_ACHLI Length = 281 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 137/257 (53%), Gaps = 6/257 (2%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 +E ++ E ++++L++ L +++ +AEA S A +V++ K LG++GF++ + + Sbjct: 11 KEALSMAERIVLDYLIENKTLLKDFSVEKIAEAAYTSPASVVRMCKKLGYNGFKDFK--I 68 Query: 84 EDYFSQSEQVLPSELAFDEA----PQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + + S+ +P + + Q+ K +R + E ++ + +AA Sbjct: 69 DFILANSKVEIPETSEYTDVILIKDQNNGKKAIENNIRALEETINLYDEKTYTKAASLIM 128 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 AR+ ++G G S +C D++ K RI C A ++H + AS + DVV+ +++SG Sbjct: 129 NARKILIFGKGSSFLVCKDLEMKLRRINKFCVAQGESHDQFVDASFINNKDVVIFISNSG 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 +T ++ ++ LAK+N II IT S +A ++D ++ + A E+ ++RI Q++ Sbjct: 189 KTKEIISSALLAKENKTPIISITRIGSSILADISDVVLYTSALESEFRSAAMTSRISQMS 248 Query: 260 LLDAFFVSVAQLNIEQA 276 ++DA + A +I+++ Sbjct: 249 VVDALYAKCAYTDIDRS 265 >UniRef50_B9B6B2 Transcriptional regulator, RpiR family n=3 Tax=Burkholderia multivorans RepID=B9B6B2_9BURK Length = 311 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 7/254 (2%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 ++ + + +E+++VE LL A VA VS +++ ++ LGF+GF L Sbjct: 40 IQARSGDLAASEAKVVELLLSDPLFVGASTTAQVAARAGVSPPTVIRAARALGFTGFTEL 99 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSI----VNVDEIHRAA 135 + + + P E+ +A V ++RT ++ S + + + +A Sbjct: 100 KIEIARARGTARFFAPPEVLTADASS---AAVLETSIRTGVDALSALSGAIEIAALDKAV 156 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 QARQ +GAG S + AD + +GV PD M++A LL GDVV+ V Sbjct: 157 ASIQQARQVFAFGAGPSATVAADAVFRLRAVGVTTVGIPDYLSAMIAARLLGPGDVVIAV 216 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + +GRTS A + A GA ++ +T+ Y +P+A LAD + P A +R+ Sbjct: 217 SSTGRTSSTLAVADAASSAGATLVAVTNQYGTPLANLADIALVVGGAPLPAQMAAAGSRL 276 Query: 256 LQLTLLDAFFVSVA 269 QL ++DA ++A Sbjct: 277 AQLVVIDALVAALA 290 >UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulator CA_C0191 n=5 Tax=Clostridia RepID=Y191_CLOAB Length = 283 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 133/257 (51%), Gaps = 10/257 (3%) Query: 20 LRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +R+K+ + +E +I E++L +IK++A S++ +V++ K+L + G++ Sbjct: 6 IRIKEIINDLNPSERKIAEYILNNSKAISDLSIKELAGKSGSSKSAVVRLCKILNYKGYK 65 Query: 78 NLRSALEDYFSQSEQVLPSELAF-DEAPQDVVNKVF-NITL---RTIMEGQSIVNVDEIH 132 R A+ + V E + D P+D ++ + NI+ ++I +++ + + Sbjct: 66 EFRIAIA---KDTVNVDKEENRYTDINPKDDLHTIIKNISYNNKKSIDNTMEVLSEELVE 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A+ +A + D YG G S + D KF+RI +A PD H+ + AS L++GDV Sbjct: 123 KASEAISKAYRVDFYGIGASYIVAMDAFQKFMRINKNVRATPDTHLQVEFASNLKKGDVA 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++++G T D +++ AK+ GA I +T + I+ L D + +PE S Sbjct: 183 VAISYTGETKDTFESIKAAKEAGATTISVTKFGSNSISDLCDINLFVLSPEITFRSGAMS 242 Query: 253 ARILQLTLLDAFFVSVA 269 +RI QL ++D F SVA Sbjct: 243 SRIAQLNVIDILFTSVA 259 >UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment) n=3 Tax=Lactobacillus RepID=C2D3P4_LACBR Length = 281 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 5/254 (1%) Query: 17 APYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 +P +KQ + ++ +I ++++ + I+D+A S A + ++ K LG+S Sbjct: 3 SPVQMLKQSFDNLSRTNKKIAKYVIDNPQAASEANIEDLAAVTETSTASVSRLVKTLGYS 62 Query: 75 GFRNLRSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 FR +L Y Q LP ++ ++ + +K+F + R + + + ++ +E Sbjct: 63 NFREFTLSLA-YTQLRPQNLPIFKDIDANDTLSTIADKIFTSSQRALQDTREGIDENEFA 121 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 R+ R+ +G GGS+ D HKFLR + C YPD + +M A L E D Sbjct: 122 RSVLRIIHCRRLGFFGLGGSSVAALDGYHKFLRTSIDCFYYPDFDVQLMQAVKLGEDDCA 181 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +VV+HSG+ E K+ +I IT SP+ +D S + E+ Sbjct: 182 IVVSHSGKNRQTIKIAETLKRRKVPVIAITSYQDSPLVGHSDITFISSSDESNYRSEGMY 241 Query: 253 ARILQLTLLDAFFV 266 + + QLT++D F+ Sbjct: 242 SLLAQLTIIDTLFM 255 >UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=cellular organisms RepID=A9BXM8_DELAS Length = 323 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 133/267 (49%), Gaps = 22/267 (8%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E R+ +L ++++AE VS+ +V+ + +G+ G + + L S+ Sbjct: 58 EQRVARLVLADPRAFARQPVRELAERAHVSKPTVVRFCRSMGYDGLADFKLKLAGSVSEG 117 Query: 91 EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF----FYQARQRDL 146 + + D+ DV+ KV + + ++ ++ + I +AA+ + R+ + Sbjct: 118 VPFIHRSVDTDDKTSDVMVKVVDNAVAAFLQYRNAASTTAIEQAAQAIASTWQTGRRIEF 177 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 YGAG S + D QHKF R+GV A D H+ +MSA+LL GD +++++SGRT D+ Sbjct: 178 YGAGNSGIVAQDAQHKFFRLGVTSLATSDGHMQVMSATLLGPGDCAVIISNSGRTRDLMD 237 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPE-----TPLLGRNASARILQLTLL 261 A ++A+KNGA I IT S SP+A + + PE +P++ +R+L L ++ Sbjct: 238 AADIARKNGATTIAITAS-GSPLASACHIHLAADHPEGYDRYSPMV-----SRLLHLLVI 291 Query: 262 DAFFVSVA-------QLNIEQANINMQ 281 D VA Q +EQ N++ Sbjct: 292 DVLATCVALRIGPALQPALEQMKNNLR 318 >UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n=3 Tax=Vibrionales RepID=A5L3V2_9GAMM Length = 282 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 125/242 (51%), Gaps = 4/242 (1%) Query: 52 DVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED----YFSQSEQVLPSELAFDEAPQDV 107 ++A+A+ VS++ IVK S+ +G+ GF ++ L Y S++ + + ++P V Sbjct: 39 ELAKAVGVSQSTIVKFSQKIGYKGFSEMKVKLYQSDMSYQPVSQRGIHGTITRKDSPDTV 98 Query: 108 VNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIG 167 + K+ +++ + +++ AA + A + + G G S+ + D +K ++IG Sbjct: 99 MEKLLASKTQSLERTVLLNEGEQLSNAADLLHLANKIQISGVGASSLVAKDFAYKLMKIG 158 Query: 168 VRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHS 227 A PDAHI + +A+ L E DV++ +++SG+T +V +LA+ AK+I I+ S Sbjct: 159 HAVHAEPDAHIQIANAASLTENDVLVAISYSGKTREVVKVAQLARSKKAKVIVISQLSPS 218 Query: 228 PIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + K AD + S A E + + +AR Q + D F+++ Q + + Q A+ Sbjct: 219 ALDKYADIKLISAADENHIRSSSITARDSQFYITDLLFIALTQQEEQADQLIEQSKSAVA 278 Query: 288 DF 289 +F Sbjct: 279 EF 280 >UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=Streptomyces RepID=B5GNW3_STRCL Length = 354 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT + R+ E + A + +AE SEA +V+ ++LLG+ G+R+LR AL Sbjct: 79 MTRSMQRVAEAVADDPAGCAALTVTGLAERTGTSEATVVRTARLLGYPGYRDLRLALAGL 138 Query: 87 FSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 + + + ++++ D+ DVV K+ +T+ + + ++ + A AR Sbjct: 139 AAHQQSGRSPSVTADISVDDPLPDVVAKLARDEQQTLADTAATLDTAALAAAVSAAATAR 198 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 + D+YG G S+ + D+ K LRIG+ A+ D H+ + +A L+ GDV + +THSG T Sbjct: 199 RIDIYGVGASSLVGLDLAQKLLRIGLIAHAHTDPHLAVTNAVQLRTGDVAVAITHSGSTG 258 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-CSPAPETPLLGRNASARILQLTLL 261 DV + A + GA I IT P+ + AD+++ S + E+ L S+R QL ++ Sbjct: 259 DVIEPLRAAFERGATTIAITGRADGPVTQYADHVLTTSTSRESELRPAAMSSRTGQLLVV 318 Query: 262 DAFFVSVAQ 270 D F+ VAQ Sbjct: 319 DCLFIGVAQ 327 >UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocaceae RepID=Q03YQ8_LEUMM Length = 284 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 2/251 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR +++ E +++++++ + + I++++E VS A I + K +G FR Sbjct: 9 LRAQRKQYNTTEQKLIDFIINHVSEAREANIQEMSELSGVSTATISRFVKKIGLESFREF 68 Query: 80 RSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 +L +Q + L E+A + V KVF + S + ++ A Sbjct: 69 SVSLASAATQMAASVDLFGEIADTDDTIAVAQKVFGGAENALAATVSNLTATQLDEATLA 128 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 AR+ +G GGS+ + + HKFLR + A+PD + +M A L D +V++H Sbjct: 129 LISARRVGFFGIGGSSIVAFNAYHKFLRTPIDVIAHPDYDVQLMQAVKLNSNDTAVVISH 188 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SGR D + + KII +T SP+AKLAD ++ S A E + S+ I Q Sbjct: 189 SGRNKDTLLIAKKLHEQHVKIIAVTSFKDSPLAKLADLVLLSLAEEVNFRSESMSSLIAQ 248 Query: 258 LTLLDAFFVSV 268 LT++D F V Sbjct: 249 LTIIDTLFTLV 259 >UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8M2_9ACTN Length = 291 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 128/256 (50%), Gaps = 3/256 (1%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E + ++L+ + S ++K +A VS A +V++ K +GF GF+ ++ L + Sbjct: 19 EKAVARYVLQCPHESNRLSVKALAARSFVSPAAVVRMCKSIGFEGFKEFKTELTRELATE 78 Query: 91 EQVLP---SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 + +LP ++ ++ + ++ K+ + ++ + +++ + I +A + L+ Sbjct: 79 KLILPLDTKDIKQNDTLESIIKKITLKNIHSLYDALRLIDPETIEKAVELLQACDRILLF 138 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G G S D KFLR+ C D H+ +++A DV +V+++SG+T++ Sbjct: 139 GLGASLIAAKDANLKFLRVNKTCLINDDWHLQLITARNSTSQDVGIVISYSGQTAETLTC 198 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 E+ K N II IT SPI+KLAD ++ + + E+ S+RI QL ++D + + Sbjct: 199 AEILKHNNTPIIAITRCIESPISKLADVLLYTTSNESLFRSAAMSSRISQLNIIDILYTA 258 Query: 268 VAQLNIEQANINMQKT 283 A + E+ + KT Sbjct: 259 FAVSDYEKNFTYLSKT 274 >UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3D9_THELT Length = 276 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 129/271 (47%), Gaps = 9/271 (3%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 ++ Q+ T+ E+ + ++++ + +I ++ + L + + +V+ + LGFSGF Sbjct: 9 IKANQKQFTKKENELAQFVIDHPDEVIHMSITEIVDELRIGQGTVVRFCQKLGFSGFHPF 68 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE--IHRAARF 137 + AL + E+ E +D++ V ++ I E ++ ++E +++ A Sbjct: 69 KIALAKSLGRQEEA-------SEGSKDMLAMVKEDHIKAIEETSKLLKLNEKVVYQCAEK 121 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 R+ L G G S D +KF+RIGV + D H MS S E D V+ + Sbjct: 122 ISNCRRLYLLGVGASGVTALDAYYKFMRIGVDVKYMLDPHFQAMSLSGCNEKDCVVAFSQ 181 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T+ V ++AK+N A +I +T SP+ AD+++ + E P ++I Q Sbjct: 182 SGSTAVVVDMAQIAKQNKACVIAVTGYNKSPLTFYADFVLLTAVRENPFQSGAIRSKIAQ 241 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 L +L+ F L ++A N+ +T V+ Sbjct: 242 LHVLEVLFEQTKLLLADKAKQNVDRTARSVE 272 >UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ITC5_RHOCS Length = 280 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 131/255 (51%), Gaps = 11/255 (4%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + G+ +E +I + +L+ + ++ ++A VS+ +V+ + +G SG+++ Sbjct: 5 IRSMRPGLRRSEQKIADIVLRQPHAVVNASVAELAHDADVSQPTVVRFCRSIGCSGYQDF 64 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + L + + D+ ++ K+ N ++ + ++ +N D + A + Sbjct: 65 KLRLAQDLAAGPARPEDAVRPDDPVAEIAAKLLNRSIGALTRLRNQLNPDALEAAVQVLT 124 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 + R+ D YG G S + D Q+KF R+G+ A+ D+H+ M+A+LL V L V+ SG Sbjct: 125 ETRRLDCYGFGASGVVALDAQNKFFRLGLPVVAHTDSHVQAMAAALLGPQGVALAVSRSG 184 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPE-----TPLLGRNASAR 254 RT ++ +V+LA GA++I IT + SP+A A + APE TP+ ++R Sbjct: 185 RTRELLRSVDLALAGGARVIAIT-AGGSPLAGRATVPLLVDAPEDSSPYTPM-----TSR 238 Query: 255 ILQLTLLDAFFVSVA 269 I L ++D V+ A Sbjct: 239 IAHLAVVDILQVATA 253 >UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n=48 Tax=Gammaproteobacteria RepID=B5FDJ7_VIBFM Length = 283 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 135/263 (51%), Gaps = 8/263 (3%) Query: 23 KQEGMTENESRIVEWLLK-PGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRS 81 ++ ++ N +I++++L P ++S + + +A + VS++ IVK+++ LGF GF + Sbjct: 10 QRSNLSSNGIKILDFILDDPASISSYSS-QALAAKVGVSQSSIVKLTQRLGFKGFTAFKL 68 Query: 82 ALEDYFSQSEQVLPSE------LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 A+ + + + +L E + D++ + K+ ++ + +N E Sbjct: 69 AIIEDLGRKQAILEPERPIHNKINSDDSSLTIAQKLVQEKTHALIATTNAINFSEFELVT 128 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 QA++ + G GGS D+ K L+IG+ D+H+ + +A+ L + DV +V+ Sbjct: 129 TLLNQAQRIQIVGIGGSALTAKDLAFKLLKIGMTALTEQDSHVQIATANTLTKQDVQIVI 188 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG ++ A + A GA +I +T + SP+ KLA++ I + A E + S+R Sbjct: 189 SYSGSRKEILMAAQTAMDKGATVIALTSTKKSPLRKLANFCIDTIADERQFRSSSISSRT 248 Query: 256 LQLTLLDAFFVSVAQLNIEQANI 278 Q + D F+++ Q+ ++A + Sbjct: 249 AQNVITDLLFMTLLQIKSDKAKL 271 >UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIB3_RHOER Length = 291 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 3/268 (1%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 D + P + L +R ++ E RI E + +L+ + D+AE + S A +V Sbjct: 3 LDRSAPASVDLLARIRASLSSLSPAELRIAEIIEADPSLASTLTVNDLAERASTSTATVV 62 Query: 66 KVSKLLGFSGFRNLRSALEDYF-SQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEG 122 + +K LGF G+ LR AL S +E +P ++ ++ +V+ K+ + Sbjct: 63 RTAKRLGFEGYPQLRLALAAISGSGTENTIPLGVDIVAADSAGEVMAKLAEFESEQLKGT 122 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 + + + AR+ ++YG G S + D+ K RI V C+ + D M+S Sbjct: 123 AQLTDPAALEEVVSRIRSARRVEVYGIGASGIVAQDLTLKLSRIDVNCRVHLDRDAAMVS 182 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASLL D+ + ++HSG TSDV + LA++ GA IT S +A + +++ + Sbjct: 183 ASLLGPDDIAVGISHSGETSDVVEPLALARRTGASTAAITGGARSTLAVQSHHVLLTAGR 242 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQ 270 E ++R QL ++D F VA Sbjct: 243 EFGFRSAAMASRTGQLLVVDTIFAMVAH 270 >UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF6_9LACT Length = 292 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 13/260 (5%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L PY++ + E I + +K G+ + ++A+ +SEA I K K +GF G Sbjct: 10 LRPYIK----SFNDTEKIIADHFIKLGHDVVNKTLSNLADDTGLSEATIFKFVKKIGFDG 65 Query: 76 FRNLRSALEDYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 F N + ++ F ++E + S+++ +++ + K+ + + I ++DE Sbjct: 66 FPNFKISVASNFQNIEERKNELTVFSDISKEDSSYAIAQKL--VYSNKLALDNLIGSLDE 123 Query: 131 --IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 I++A Y ++ +G G S+ I D HKFLR C D H+ + A+ L Sbjct: 124 ERINQALNLIYDSQTIHFFGQGASSVIALDSYHKFLRTRFLCNYISDYHMQLSYATKLGP 183 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 D V + +HSG T++ + + N II +T ++H+ + KL+ + E+ Sbjct: 184 NDCVFLFSHSGETNETIEVARILRNNQVNIIVLTGNHHTDLVKLSSISFVVDSEESAFQS 243 Query: 249 RNASARILQLTLLDAFFVSV 268 ++RIL LT++D +V++ Sbjct: 244 ETLTSRILYLTIIDILYVAL 263 >UniRef50_UPI0000D541FA probable transcriptional regulator n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D541FA Length = 207 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 105/192 (54%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 + ++E ++ E++L + + A+ +SE +++ K +GF+GF++L+ L Sbjct: 16 LRKSEQKVGEFILNDPKSVITMKTAEASSAMGISEPTLIRFCKAIGFTGFQDLKINLSQQ 75 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 + + + E+ D++ ++ KVF+ ++ I+ +S ++ D + A A++ + Sbjct: 76 LAADDYFVMYEINEDDSIHELCEKVFDTSISEILNVRSQIDQDILENAIETLVNAKRVEF 135 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 Y GGS + D QHKF R+ + D H+ MSA+ L+ DVV+ ++ SG T+ + Sbjct: 136 YAFGGSAPVAMDGQHKFFRLKIPSSYISDPHLQFMSANSLERDDVVVAISQSGTTTALIE 195 Query: 207 AVELAKKNGAKI 218 +V++ +KNGAK+ Sbjct: 196 SVKIVRKNGAKV 207 >UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=cellular organisms RepID=Q1QSE2_CHRSD Length = 289 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 11/256 (4%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + E +E ++ ++L+ I D+A VSE +V+ + LG +GF++ Sbjct: 9 MRRRMEHFRRSEQKVARFVLRHPEDVIHMRIVDLATEAKVSEPTVVRFCRALGCNGFQDF 68 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + L + Q + ++ + + +F+ T+ T++ + ++ + +A Sbjct: 69 KLKLAQMLATGSQFAQFSMNDSDSVAEFAHNIFDSTVGTLLSVRDRLDHAALGKAVTALA 128 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A + + YG G S A+ D QHKF R+ + AY D H+ MSA L DVV+ ++ +G Sbjct: 129 MANRVEFYGFGASGAVAFDAQHKFFRLQISTAAYTDPHMQNMSAVTLTPRDVVVAISQTG 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAK---LADYIICSPAPE--TPLLGRNASAR 254 RT + A+V LA++ GA +I + S SP+A L YI E TP+ S+R Sbjct: 189 RTRALVASVRLARETGATVIGLCPS-DSPLASEVTLPLYIDVHEDTEIYTPM-----SSR 242 Query: 255 ILQLTLLDAFFVSVAQ 270 + L ++D V VA+ Sbjct: 243 VAHLVIIDVLAVGVAK 258 >UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019054B9 Length = 259 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 125/246 (50%), Gaps = 6/246 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT ++ ++L +I ++AE SEA +++ + LG+ GF+N + AL Sbjct: 1 MTRALEKVAAFVLADPQTVLYKSITELAEEAESSEASVIRFCRELGYQGFQNFKLALAHE 60 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 + +Q S AP D+V ++ + E + +++ D I R + AR ++ Sbjct: 61 LATLQQPTAS------APGDMVQELVETARTALEETERLLDRDAIQRVSSLLLDARHIEI 114 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G S +++K R+G++ D+H+ M+++ D+ ++++ SG T D Sbjct: 115 FGVAASAITAQYLEYKLARLGIQAHIPRDSHLATMASATASADDLYILISSSGSTIDTLR 174 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 E A GAK+I IT+ SP+A + D+ + + +PETPL G ++I QL ++DA Sbjct: 175 VAESAHARGAKVIAITNRTKSPLAAICDFKLLASSPETPLTGGAFPSKISQLLIVDALAN 234 Query: 267 SVAQLN 272 ++ +L+ Sbjct: 235 TITKLD 240 >UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693BD8 Length = 265 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 9/240 (3%) Query: 34 IVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQV 93 + ++++ + + I ++AE S A I + K L F GF + + L ++ Sbjct: 2 LASYIVEHAHEVVSMGITELAERSQTSPATISRFCKSLHFQGFTDFKLKLSGELAKQ--- 58 Query: 94 LPSELAFDEAP-----QDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYG 148 PSE ++ + ++V+ + LR+I + + ++ ++ +A ARQ DLYG Sbjct: 59 -PSEHSYQDIVAGNPLSEIVSAIEANHLRSIADTTQLNDIKQLQQAVSALKNARQIDLYG 117 Query: 149 AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAV 208 S + D K +RIG R + D H+ + SAS L E DVV +++SG T + A+ Sbjct: 118 VATSGIVAQDFYQKLVRIGKRTSVFSDPHMQITSASNLGENDVVFAISYSGDTEETIQAL 177 Query: 209 ELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSV 268 AK+ GA I +T +P+A L+D + + E + + ++RI QL ++D F S+ Sbjct: 178 RCAKERGAVTISLTKFGTNPLANLSDIRLFASTLEEGMRRGDMASRIAQLHVIDILFTSL 237 >UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enterobacteriaceae RepID=A1JQZ2_YERE8 Length = 286 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 7/257 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 + EN+ +I + +L + + AE VS++ IVK S+ +G GF L+ A+ + Sbjct: 14 LAENQKKIAKCILDNPESILSISSSQFAEDAGVSQSAIVKFSQKIGMKGFPALKIAISEE 73 Query: 87 FSQS-------EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 S++ + L + ++ +++ + K+ + +IME +N + Sbjct: 74 LSRNNLFKSYPHKALHNSISPEDSLMVMAQKLAHEKTASIMETTRKINFSVFQQVVSLIN 133 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A++ + G G+ D+ +K +IG+ D H+ + +A L DV +V++ +G Sbjct: 134 AAQRVQIVGIWGAGLTAKDLSYKLQKIGIMTLVEADLHVQIAAALTLTPKDVQIVLSFTG 193 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 R D+K A +AK GA +I IT S SP+AK+ADY++ S + E + S+R Q T Sbjct: 194 RRKDMKIAATVAKAQGATVIAITGSKVSPLAKIADYVLESISDENEWRSSSISSRTAQNT 253 Query: 260 LLDAFFVSVAQLNIEQA 276 L D F+++ Q E A Sbjct: 254 LTDLIFLALMQQRKEMA 270 >UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJ20_EXIS2 Length = 284 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 E + + ++ +++L N I +AE S A +V+ + LG G+ LR + Sbjct: 13 HEELPSSSRKVADFVLAHMNEIAGMTIHHLAEESGTSAAAVVRFCRALGLKGYPELRMRI 72 Query: 84 EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 ++++ ++ +E P D+V K + +++ + + ++ D I AA QAR Sbjct: 73 SADTARTDLKGYHDIEKNERPADLVEKTVSNSIQALQDTAKQLSEDRIAEAADVLDQARA 132 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 YG G SN + D K+ R+G D H++ + + DV +++SG T + Sbjct: 133 IYFYGIGASNVVALDAAQKWTRVGKLTIQESDQHLVATILANASQDDVFFAISYSGETEE 192 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADY-IICSPAPETPLLGRNASARILQLTLLD 262 V + LAK G K+I +T + +++LAD + S APE PL S+R+ QL +D Sbjct: 193 VVELIRLAKIRGLKVISLTRFGDNRVSQLADIALWTSRAPEAPLRSAALSSRLAQLFAID 252 Query: 263 AFFVSVAQLNIEQANINMQKT 283 F+S A ++ + +Q T Sbjct: 253 VLFLSYAAVHYDDTIERLQYT 273 >UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus RepID=D0R5V5_LACJF Length = 272 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 132/251 (52%), Gaps = 11/251 (4%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 ++ +T++E+++ ++ IK + A +A IV++ K LG+SGF +L+ AL Sbjct: 11 KDKLTKSENKLANYIATHTEHVIYDTIKSLGTANNTGDATIVRLCKKLGYSGFSDLKIAL 70 Query: 84 EDYFSQSEQVLPSELAFDEA--PQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQA 141 + ++ + + +EA ++ +KV + +I + + ++N + +A +A Sbjct: 71 -----AQDSMMTTSKSHEEAQTSSELSSKVL---ISSIEKTEELINPSVLKQAVSLLAKA 122 Query: 142 RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 R+ ++G G S D + +LRIG+ A D HI + A+LL + D+V+ ++ SG T Sbjct: 123 RRIHIFGLGHSGESARDYERTWLRIGLIANAESDPHIQVQVATLLSKDDLVVGLSLSGHT 182 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLL 261 D ++++AK+ GAKII IT+ SPIA+L D + + E +G + ++ QL L Sbjct: 183 KDTYDSLKVAKEYGAKIIAITNDLTSPIAQLGDVSLQTSVSEFMNIG-TVAGQVSQLYLC 241 Query: 262 DAFFVSVAQLN 272 D +LN Sbjct: 242 DVLAREYEKLN 252 >UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIQ0_CLOPH Length = 284 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/272 (23%), Positives = 125/272 (45%), Gaps = 3/272 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ + T++E + +++ + +I D+AE V + + + K L + Sbjct: 4 GIFARIESSYSKFTKSEKIVADFVFENPEKVLYTSITDLAEICGVGDTTVFRFCKALKLN 63 Query: 75 GFRNLRSALEDYF---SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ + L + S+ + ++ D+ Q + K + + + E +N + + Sbjct: 64 GYQEFKMFLAQDIAVRTGSDYTINGSVSQDDDIQTICKKALAVDIAALTETFEGLNFEAV 123 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + A + +G G S I + + KF+RI + D H+ MSA+LL D+ Sbjct: 124 TKVVDMISNANKVQFFGMGSSGVIALEAKMKFMRILPNVEHIADCHMQFMSAALLSSRDL 183 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++SG T D LAK NG K++ IT +S +A ++D +I + E PL G + Sbjct: 184 AIIFSYSGSTKDSIEIANLAKSNGCKVVSITRYVNSHLANISDVVIPCGSNEGPLDGGAS 243 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 S ++Q +LD ++ + Q+ +N KT Sbjct: 244 STSMVQFYILDILYLLYFTKHYHQSKLNKAKT 275 >UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=Gammaproteobacteria RepID=B4EZY5_PROMH Length = 295 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 124/251 (49%), Gaps = 4/251 (1%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 + +T RI +++L +I +++A EA +V+ + LG+ GF++ + L Sbjct: 22 KNSLTRVSQRIADYILFHPTEVTQLSIAQLSQATKAGEATVVRFCRTLGYKGFQDFKMDL 81 Query: 84 EDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + S+ +L +E++ + + K+ + E +++++ ++ A Sbjct: 82 AIEMATSDNDESPILDAEVSHQDDIHTIGLKLQATINNVLSETLNLLDMQQVQGAVNALL 141 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A + G G S D+++K +RIG R A + H M M ASLL+ GDV + ++HSG Sbjct: 142 SANYVFICGVGSSGITAEDLKNKLMRIGYRVDAVTNNHFMYMQASLLKSGDVAIGISHSG 201 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 + + A++LAK+ GA I +TH+ S I + AD+ + + + L G + + QL Sbjct: 202 NSLETVHALKLAKEAGASTIALTHNLGSQIMEYADHHLINGNRQGKLQGDSIGTKTAQLF 261 Query: 260 LLDAFFVSVAQ 270 +LD + + Q Sbjct: 262 VLDLLYTLLVQ 272 >UniRef50_C8STB5 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STB5_9RHIZ Length = 275 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 5/245 (2%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR MT +R+ E +L + + +I ++AEA A SEA +++ + GF+GF++ Sbjct: 9 LRAAAGDMTPALARVAETVLAQPDATLRQSITELAEASASSEASVMRFCRDQGFAGFQDF 68 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + AL + E+ L P D + ++ + ++ E + ++ ++I +AAR Sbjct: 69 KLALAKELATDERARDIGL-----PTDDIQRLVETAIISLRETEQLIVREDIAKAARQLL 123 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A D +G S + +K RIG +A DAH+ +M+A Q+G V +V++ SG Sbjct: 124 AATAIDCFGIAASAITAQYLAYKMTRIGKLSRALGDAHLAVMAAGTTQKGTVQVVISSSG 183 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T D ELA+ GA +I I++ SP+ D + + PETPL G ++I QL Sbjct: 184 STIDAVRIAELARSQGAFVIGISNRSKSPLVAACDLALIASWPETPLTGGAFPSKISQLL 243 Query: 260 LLDAF 264 ++DA Sbjct: 244 IVDAL 248 >UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=Ralstonia pickettii RepID=B2UF98_RALPJ Length = 287 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 133/263 (50%), Gaps = 2/263 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR + ++ + + +L LS +++ +A VS IV++ + LGF G R Sbjct: 12 LRAQLPALSPAQQGVARLILDAPELSLEQSVETLAVRAGVSMPTIVRMCQALGFEGLREF 71 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 ++ L + ++ LP + + P V +KV + R + + + ++ ++ AA Sbjct: 72 KATLAAELAHAQPTLPGHVGRADPPALVASKVIDGATRALAKLRESLSTTQVDAAAERIA 131 Query: 140 QARQRDLYGAGGSNAICA-DVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 +AR+ D Y AG +++ A D+Q + +R+G+ AY DAH+ ++SA++L DVV+ +H Sbjct: 132 RARRVDCYAAGAASSFMANDMQARLMRLGLASNAYFDAHLQLVSAAMLGASDVVVAFSHV 191 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 GR + ++ A + GA +I IT + +P+A+ A + PE ++ A ++ L Sbjct: 192 GRMPYLLESIAYAAEQGACVIAITQA-GTPLAERAQIALTVDVPEDAVMRVGTEAYLVHL 250 Query: 259 TLLDAFFVSVAQLNIEQANINMQ 281 T+++ VAQ E M+ Sbjct: 251 TVIEILMTCVAQRRDEMVRSRMR 273 >UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6A5_9CLOT Length = 282 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 133/261 (50%), Gaps = 11/261 (4%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED---YF 87 E+++ E++LK + ++A+ S A +V++ K + GF L+ L + YF Sbjct: 22 ENQVREYILKYPKKVLEYTVYELAKESFTSPATVVRLCKKIDIKGFARLKVLLAEETKYF 81 Query: 88 SQSEQVL--PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 + L + + +++P ++ K+ NI ++TI E + +VN + + AR +A D Sbjct: 82 QDMKLNLLDTTTIEKNDSPHAIIEKITNIAVKTIEETRVLVNEKQFMQVARLLQKAVIVD 141 Query: 146 LYGAGGSNAICADVQHKFLRIG---VRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 YG G S+ + D Q+KF+RIG + Q Y ++ +++ G +++++SG T Sbjct: 142 FYGVGASSPVAIDAQYKFMRIGKNVITYQLYDRQYVQAVNSDASHVG---IIISYSGETK 198 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 ++ + +KNG ++ +T S + + ++ADY + A ET ++R QL ++D Sbjct: 199 EMLKIAGILQKNGTPVVAVTSSGENSLNRIADYNLFVTAKETVFRSGAMASRTAQLYIID 258 Query: 263 AFFVSVAQLNIEQANINMQKT 283 + L+ +++ +Q+T Sbjct: 259 ILYALYCSLDYDESIKKIQQT 279 >UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4M2_9CLOT Length = 282 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/250 (22%), Positives = 127/250 (50%), Gaps = 1/250 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R K ++ ++ + +++L + + ++A A VSE +++ L ++ ++ Sbjct: 9 IRTKYNTLSSSQKDVADYILTNPDKVMMNTLNEIAAACRVSETTVLRFLHKLNYNSYQLF 68 Query: 80 RSALEDYFSQSEQ-VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 R L S+ Q + ++ F + ++++K+ + T+ +I + + I++ + Sbjct: 69 RINLTQELSKDNQETVYDDVGFQDTEDEIIDKIIHSTVSSITDSRQIIDPASVKAVVEKI 128 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 AR+ + G G S I D+ HK +++G+ D HIM + A+ L + ++++ +HS Sbjct: 129 AGARRIVVAGVGASGFIAQDLYHKLIKLGLNAVCANDPHIMNILATGLDQNTILILFSHS 188 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G + +V +AK+ ++ +T S +A A Y++CS + ET ++RI+Q+ Sbjct: 189 GESREVLDMAAIAKERRCQVCAVTSYAKSTLANQAGYLLCSSSRETMFRSDAMTSRIVQM 248 Query: 259 TLLDAFFVSV 268 ++D +VS+ Sbjct: 249 VIIDILYVSL 258 >UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YX9_LACSS Length = 280 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 5/271 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR + +E +I +++ + + I++ A VS A I + +K+LGF F+ Sbjct: 9 LRSYYDNFSEKYKQIADYIFQESQFNQRLTIQEFAANCGVSTATISRFAKILGFDNFQAF 68 Query: 80 RSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + AL ++ P E+ ++ + K+F+ + S++ +++ +A Sbjct: 69 KMAL---LAKEANTSPLFHEINANDTFTTMAEKIFSSNSNALKATWSLLTEEQLQKAVAL 125 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +A L+G G S + D HKFLR + D H+ +M A+ L D ++++H Sbjct: 126 INRAHLLSLFGLGASGIVAQDGYHKFLRTSIPTVFNQDYHLQLMQATKLTNQDCAIIISH 185 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG+ D + K+ +I IT +S +AKL D + S + ET A I Q Sbjct: 186 SGQNKDALELARILKERQVPLIVITSFGNSSLAKLGDITLLSISEETNYRAEALHALIAQ 245 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 ++L+D+ F+ VA N ++ + ++ A +D Sbjct: 246 ISLIDSLFMMVAVNNGQETEQSFKEIRAEID 276 >UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4LA29_STAHJ Length = 283 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E R+ E++L+ + +++ +A+ VS A +V++SK L GF++L+ L+ + + Sbjct: 19 ERRVAEYILEHPDEIINYSVQKLADLTNVSVATVVRLSKKLKCKGFQDLK--LKIAYDLN 76 Query: 91 E----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 E Q +E+ D + ++V VF+ +T+ + + I++ + I A +R+ + Sbjct: 77 EPGNIQRGYAEIDKDYSIEEVTQTVFHNNTKTLRDTERILSTENIKHAFELIVNSRKTCI 136 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 YG G S I D + K RI C + ++ L DVV+ ++ SG+T D+ Sbjct: 137 YGIGASALIAQDFKQKLTRIDYWCDVGSSFDEQVTLSANLSSEDVVIAISSSGQTKDIVN 196 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 + +LAK+ GAK+I IT +PI+ L+D + + E S+RI L+++D ++ Sbjct: 197 STQLAKEKGAKVISITKYGDNPISNLSDVQLFVSSSEKAKRSGAMSSRIAMLSIIDILYI 256 Query: 267 SVA 269 +A Sbjct: 257 CIA 259 >UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C2G7_BEUC1 Length = 285 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 10/259 (3%) Query: 33 RIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQ 92 R+ E +L+ + I ++A SE IV+ + LG +G+ LR L + E Sbjct: 20 RVAEAILERPQVVLEKTISELASQCETSETTIVRFCRTLGLTGYVQLRLELATEIGR-EN 78 Query: 93 VLPSEL--------AFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 EL A D F TL I E + ++++ + R A + Sbjct: 79 AQRGELGDHGADILAEDGLAAMAAKIAFTDTL-GIEETLASLDIEHLERVVDAIDTAGRS 137 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 YG G S + AD+Q K RIG + D H + +A+L GDV + +HSG T + Sbjct: 138 VTYGVGSSGSSAADLQRKLFRIGRVAFTFDDPHDAVTAAALSSPGDVAVAFSHSGATREA 197 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 A + A K+GA+ + +T+S S +A+ AD ++ + ET ++RI QL ++D Sbjct: 198 LAFLATAGKHGARTVAVTNSAESALARAADIVLVTSVRETQFRSGAMASRIAQLMIVDCI 257 Query: 265 FVSVAQLNIEQANINMQKT 283 FV VAQ +Q ++ T Sbjct: 258 FVGVAQRRYDQTVDALKST 276 >UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulator TM_0326 n=7 Tax=Thermotogaceae RepID=Y326_THEMA Length = 280 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 127/252 (50%), Gaps = 2/252 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAV-SEAMIVKVSKLLGFSGFRN 78 ++ K + T E +I + +L +I D++E V SEA +VK K LG + F+ Sbjct: 7 IKEKYDEFTNAEKKIADTILSDPKGIIESSISDLSEKAGVKSEASVVKFYKKLGLNSFQQ 66 Query: 79 LRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + L S++ +++ +++ ++ + + K+F T+R I++ + +++D I R Sbjct: 67 FKVLLAQSISRAPLEIVYEDVSSEDDTKTITEKIFKATVRAILDTLNWLDIDSIERTVDL 126 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 F A++ G S A+ D HKF RIG C D HI+ + D+++ ++H Sbjct: 127 FKNAQRIIFIGFAASAAVAFDAFHKFTRIGKNCLFSNDEHIIAAILATASPSDLLVAISH 186 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 +G T V + AK+ ++ IT + S +AK +D ++ + ET + ++RI+Q Sbjct: 187 TGETISVVNFAKKAKEMKMPVVTITGNRKSTLAKYSDVVLATNTKETKIRTDAMTSRIVQ 246 Query: 258 LTLLDAFFVSVA 269 L +LD + +A Sbjct: 247 LVILDTIYTLLA 258 >UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus suis RepID=A4VXR0_STRSY Length = 275 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 2/246 (0%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 E +T E+++++++ + + I +A+ VS A I ++SK +G+S F L+ +E Sbjct: 11 ENLTPTENKLLDYIEENIHRIETMNIYQLADNAGVSTATISRISKKMGYSNFNKLK--IE 68 Query: 85 DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 S+ + +L + ++ D+ K+ + + + S +N++E+ A + A + Sbjct: 69 IAKSKYDDLLNAHFTPSDSIDDISTKLIHSITISNQQTVSFLNLEELEAAVKLLQSASRI 128 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 L+G G S +C+D +K RIG C D HI M + + GD+ + +++SG T +V Sbjct: 129 YLFGVGASGIVCSDFYYKLSRIGKTCIFAQDTHIQMANIATAGNGDLAIGISYSGMTKEV 188 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 + AK+NG I IT + + +A LAD P E L ++R L L D Sbjct: 189 VEPLRFAKENGVSTITITGTGKNQLADLADITFRIPRHEHELRVGAITSRSNSLFLTDLL 248 Query: 265 FVSVAQ 270 ++++ Q Sbjct: 249 YLALIQ 254 >UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D858_9CLOT Length = 275 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 8/242 (3%) Query: 31 ESRIVEWLLKP-GNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR--SALEDYF 87 E R E+LL + P I +A+ VSEA +V+V +G+SG + L+ A E+ Sbjct: 24 ERRFAEYLLNSFAGIEKEP-IAVLAKEAQVSEATVVRVCHKMGYSGLKELKIVVARENET 82 Query: 88 SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 + S DE + +VF +R + + ++++ DE+ +A + A +Y Sbjct: 83 AGSFDGGIGGQYMDELKE----RVFMGAIRALQDTMNLIDEDEVEKATKVLCNANYISIY 138 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G GGS + ++H+ +++G+ Y + +++A +GDV + ++HSG +S V A Sbjct: 139 GVGGSVPVARSLKHQLMKLGIPSNVYNEFQPTIIAAEKYNKGDVAIGISHSGESSQVVEA 198 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 + +A+ GA ICIT S I +D + + G N+ ARI Q ++++ +++ Sbjct: 199 LRIARGKGATTICITSYGDSAITHCSDVKFFTTSETLLNGGDNSLARIAQTSIINLLYLN 258 Query: 268 VA 269 VA Sbjct: 259 VA 260 >UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor) n=2 Tax=Bacillus RepID=Q9K6Z8_BACHD Length = 284 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 2/240 (0%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E+++ ++LK L K +AE S++ IV+ K LG F L+ AL ++ Sbjct: 21 ETKVANYVLKHPELVPTMTTKQLAEQANASQSSIVRFCKRLGLESFPKLKLALAKELTRK 80 Query: 91 EQVLPSE--LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYG 148 E + S L D++P + KV ++ + +N A +A++ +G Sbjct: 81 EAYINSASLLETDDSPPILFQKVSSLNQMALDMATKAMNEQAFTEAVEQMVKAKKIAFFG 140 Query: 149 AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAV 208 GGS C D Q+KF+R+G A D H M+ +++ E DVV+ ++ SG T +V Sbjct: 141 VGGSFTSCIDGQYKFMRLGFHSLASGDYHQMIPFITMMDEQDVVICMSTSGNTKEVLDIA 200 Query: 209 ELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSV 268 + AK+ K+I IT S S + + A + P E + ++R QL ++DA +VSV Sbjct: 201 DYAKERNVKLIGITASSRSALTRKAAVSLLIPDIEVQQRIGSIASRTSQLNVIDALYVSV 260 >UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Q9_9CLOT Length = 287 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 135/260 (51%), Gaps = 25/260 (9%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAV-SEAMIVKVSKLLGFSGFRNLRSALED 85 +T+ + ++ +++LK + +I D+ ++ SEA +VK +LLGF GF++ + L Sbjct: 21 LTKGQKQLADYILKNPSEVVNKSITDLISHTSLKSEASVVKFYRLLGFDGFKSFKIKLAQ 80 Query: 86 -----YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQ 140 F SE S++ D+ P ++ KVF + ++ + I E A + Sbjct: 81 ELVNRTFYHSE----SDITIDDEPTEIKKKVFLGAMSSLSKNADIA-AGECMDAQKLLSS 135 Query: 141 ARQRDLYGAGGSNAICADVQHKFLRI---GVRCQAYPDAHIMMMSASLL---QEGDVVLV 194 A++ + G G S +IC Q+ F R+ G+ C DAH M+A++L + GDV+L Sbjct: 136 AKRIIILGHGASASIC---QYAFFRLTELGLNCVCNQDAH---MNAAILTHPRPGDVILC 189 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V+ SG T+D+ +E+A + I IT + S IA+L+ I+ + + E +L ++R Sbjct: 190 VSQSGETADLYKQIEMAYQRRIPAILITGAPGSSIARLSQVILSTVSEERNILTDALNSR 249 Query: 255 ILQLTLLDAFF--VSVAQLN 272 + Q L+DA F +S+A N Sbjct: 250 VSQFCLIDALFSMISIANAN 269 >UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG85_KOSOT Length = 275 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 124/244 (50%), Gaps = 3/244 (1%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 + ++E+E R+ +++++ + I ++A+ SEA + ++ K LGFSG+++ + +L Sbjct: 11 DSLSESERRVAKYIIERPDDVIHYTITELAKFSHSSEATVYRLVKKLGFSGYQSFKISLA 70 Query: 85 DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 S ++V+ E + + Q+ V ++ + E +++++D + +A AR+ Sbjct: 71 RELSIPQEVI--EEGSEGSYQNFVERIVQENISLAKETMAVLDLDALKKAVELIINARRL 128 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 +G G S + F +G Y D H +M AS L DVV+ ++H+G D Sbjct: 129 VFFGVGRSAVVAQSGSFNFALLGFSSTHYIDPHAQVMVASGLTNEDVVVGISHTGTIRDT 188 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 +V++A GAK I IT +SPI ++ D ++ + A + P +RI + +LD Sbjct: 189 VKSVQVAHAAGAKTIVITSGINSPITEVGDVVLYTAAGK-PSTSEFTVSRIGEFLILDIL 247 Query: 265 FVSV 268 + +V Sbjct: 248 YKTV 251 >UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMQ5_CLOPH Length = 285 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 7/272 (2%) Query: 21 RMKQEGMTENESRIVEWLLKP-GNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 R + + +E ++ + L N+ P I +AE VS+ ++ K +GF G ++L Sbjct: 9 RSIMDSLNNSERKVATYFLNNIENIFSIP-IARLAEESGVSQVTWIRFCKAIGFDGLKDL 67 Query: 80 RSAL--EDYFSQSEQVLPSELA---FDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 + +L E S SE + S+ + + + N + N TL+ + + +++ D + + Sbjct: 68 KKSLFMELNSSTSEGIDTSDFSDIKKHSTLEQMCNTIRNTTLQAVEDTIKLIDYDTLKKV 127 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +A L+G G S + D K LRI D H ++ + + DV ++ Sbjct: 128 VSILSKASCIKLFGVGASALVADDFCKKLLRINKNVNFSYDMHTQLVYGANARPEDVAVI 187 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++SG T ++ ++LAKK+ I IT SP+ ADY I APE S+R Sbjct: 188 FSYSGTTKEMLEIMDLAKKSNCPTIVITKYTKSPLVASADYSIYISAPEINYRSGAMSSR 247 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 I QLT++D F S+A N ++K+ + Sbjct: 248 IAQLTIVDLLFTSLANKNYTSVEKYLEKSSEV 279 >UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9S0_9ACTN Length = 282 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 130/255 (50%), Gaps = 8/255 (3%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 L+ ++ ++ +E +I+ ++LK I ++A+ VS A I ++ + L G++ Sbjct: 10 LKENKDRVSTSEQQIITYILKKPEAIVGVTIHELAQMTFVSAATISRLLRKLSLGGYKEF 69 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQD----VVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + L + + S + D P+D ++ K+ T+ +I + + N I A Sbjct: 70 QQYLIYELASMKTSRQSSIE-DINPKDSTKQIMFKIMRKTIESITLTEKLNNPKTIDSCA 128 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + AR ++G G S D+Q+KFLR + C D H+ +++A+ + +GDV + Sbjct: 129 ELIHNARHITIFGMGSSLLSAQDLQYKFLRANIDCTLSADWHMQLIAANNMSDGDVAIAF 188 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSP-IAKLADYIICSPAPETPLLGRNA-SA 253 ++SG T + V A+ +G K+I IT S +S + + AD ++ + E PLL +A ++ Sbjct: 189 SYSGVTPETLRCVHAAQDHGGKVIAITRSVNSTELVRHADIVLYVASTE-PLLRSSAGTS 247 Query: 254 RILQLTLLDAFFVSV 268 RI QL ++D F ++ Sbjct: 248 RITQLMIVDTLFSTL 262 >UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium RepID=C3WE65_FUSMR Length = 284 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 10/262 (3%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 + ++ E ++ E++L+ + ++A S+A +V+ +K LGF GF + AL Sbjct: 12 DNISSTEKKVGEYILENPDKIKDLNTYELANITKTSQATVVRFAKRLGFKGFPAFKLALS 71 Query: 85 DYFSQSE-----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + ++ E+ D++ + + K+ N + I + + + E+ +A Sbjct: 72 QDLGNRKAESHVNIMHEEIKPDDSFEIIGRKISNENITAISDTYEVTDFTELEKAVVMLS 131 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 +AR+ L G G S + D +K L +G D H+ + S + E DV+ V++HSG Sbjct: 132 KARKIMLAGIGFSGIVAKDFYYKLLELGKHAMIEVDTHMQLSCLSTMGEDDVLFVISHSG 191 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 +T ++ V++AK G +I +T +PI LAD + + + S RI QLT Sbjct: 192 KTMEMYNVVKVAKSKGITVIAMTSIAPNPIKDLADIRLNTVEMNSNFRSTALSPRISQLT 251 Query: 260 LLDAFFVSVAQLNIEQANINMQ 281 ++D +V ++ +E N NMQ Sbjct: 252 VIDMLYV---KMMLE--NKNMQ 268 >UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UGP6_SINMW Length = 284 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 135/263 (51%), Gaps = 4/263 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR +++ E R+ W+LK +LS ++ +A+A VS+ ++++ + GF GF +L Sbjct: 16 LRSVLPKLSDAERRVALWMLKNVDLSIRQSMSAIAQATDVSDTTVLRMCRTAGFEGFTDL 75 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + AL E + S + + ++F + + + +++ +A Sbjct: 76 KLALAQ--EPREAIEHSSGEPEASALQAAGRLFRAITQALNDTFGVLDEATFAKALDLVA 133 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A+ + G GGS + + +R+G+RC A D+ + +M A+L GD+V+ +++SG Sbjct: 134 NAKHIMVGGVGGSGIVAQAFYQRCIRLGLRCDAPIDSQLQIMHAALTGPGDLVVAISYSG 193 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 TSD ++ AK GA +CIT + S +A+LAD ++ S + E +A+I Q+T Sbjct: 194 ITSDPVLVLQEAKARGASTLCITGNSSSALARLADVVLVSVSHEQG--SEPMAAQIAQMT 251 Query: 260 LLDAFFVSVAQLNIEQANINMQK 282 L+DA + ++ N E A + ++ Sbjct: 252 LVDALYAALVARNPEPAQLTEER 274 >UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=Burkholderia RepID=Q13K65_BURXL Length = 287 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 128/262 (48%), Gaps = 9/262 (3%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 PN L P++R + E ++ + +L + + +I ++A+ VSE + + + Sbjct: 4 PN---LIPHIRSALANLRPAERKVADMVLSDVDFAMRASITELAQRAEVSEPSVTRFCRA 60 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 +G G R+ + L + + +A D+ Q +++KV + I + ++ Sbjct: 61 IGAHGLRDFKMQLAQSVAGGVPYASTAVARDDDVQTLMDKVGEAAIGGITHARGALDPAV 120 Query: 131 IHRAARFFYQARQRDLYGAG-GSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A AR+ +G G GS + D +FLR+ + A+ D H+ + A L++ G Sbjct: 121 VESAIAALSSARRVFFFGVGSGSGLVAQDAALRFLRLDIASTAFTDGHLQRLYAGLMEPG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLAD--YIICSPAPETPLL 247 DV ++HSGR+ +V ++++AK+ GA I +T+ S +A L D ++ P+P P Sbjct: 181 DVAFAISHSGRSVEVNESIQIAKERGATTIALTN-VGSRLAWLVDIPLLLRVPSPIDP-- 237 Query: 248 GRNASARILQLTLLDAFFVSVA 269 +R++ L ++DA + VA Sbjct: 238 NTPGVSRLVHLCIMDALAIGVA 259 >UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C5BVH6_BEUC1 Length = 299 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 12/278 (4%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 GL P LR +E RI E +L I+ +A S+ + + + +G + Sbjct: 22 GLLPTLR-------SSERRIAEAILDDPQAVSRDTIEQLAARCGTSKTSVTRFCRTIGLA 74 Query: 75 GFRNLRSALE-DYFSQSEQVLPSELAFDEAPQD----VVNKVFNITLRTIMEGQSIVNVD 129 G+ LR AL D + ++ +EL PQ+ VV+++ +R + E ++ Sbjct: 75 GYTELRLALAGDVGRRRDESWRAELGSSADPQNPADVVVDELLTANVRALTETVRTLDRA 134 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + + A + DLYG GGS + AD+Q +F RIG A+ ++H + A++L Sbjct: 135 ALAASVDALASAGRIDLYGIGGSGTVAADLQRRFHRIGRVAHAWSESHDALTGAAMLGAS 194 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++H+G TS+V AA+ LA+ GA I +T+ S +A AD ++ + A E Sbjct: 195 DVAIALSHTGETSEVAAALALARDRGATTIAVTNYPGSAVAAAADLVLVTAAHEERARAD 254 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + R Q+ ++D +V VA + +++ +++T V Sbjct: 255 GLAGRHAQMFVVDCLYVLVAGVLHDESQSGLRRTSEAV 292 >UniRef50_A6W619 Transcriptional regulator, RpiR family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W619_KINRD Length = 296 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 2/258 (0%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 T + +R+++ LL + + D+A + SEA +V+ ++ LGF+G+ LR AL Sbjct: 21 TASGARVLQALLADPAGAAQLTVTDLARRTSTSEATVVRTARSLGFAGYPQLRLALAAAG 80 Query: 88 SQSE--QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 + E +L L VV + + + ++V + AA + AR D Sbjct: 81 AHHEPAALLTGSLEDTADLATVVATLAAVETEAVAATARTLDVAALAAAADAVHAARVVD 140 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 YG G S + AD HK R+G+ + + H ++S++LL GD L V+HSGRT D+ Sbjct: 141 CYGIGASGLLAADFDHKAARVGLVTRLRTEGHAALVSSALLGPGDAALAVSHSGRTPDLV 200 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 + A++ GA +I +T S SP+A AD+++ + ET ++R L +LD + Sbjct: 201 GSARQARERGAAVIAVTSSPGSPLAAAADHVLVATGRETAYRAGAMASRASSLLVLDCLY 260 Query: 266 VSVAQLNIEQANINMQKT 283 V+V Q A ++ T Sbjct: 261 VAVVQRLGPAATAALRGT 278 >UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1QW74_CLOBU Length = 281 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 142/272 (52%), Gaps = 3/272 (1%) Query: 20 LRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 L +KQ + MTE+E +I +++L + + ++A S + +V+ S+ LGF GF+ Sbjct: 5 LLIKQIYDKMTESEKKIADYVLVNSSEVYKFSASELANITKTSSSSVVRFSRKLGFEGFQ 64 Query: 78 NLRSAL-EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 + L +D + E + + ++ ++V+ K N +++I + S+++ I A + Sbjct: 65 EFKIELAKDDINPVENIEYDYIDTEDNIREVIVKTANKNIQSINDTISLLDEHTIEEAIK 124 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 A+ ++G G S I D+Q+K LRI ++H+ + ++ + D+ + ++ Sbjct: 125 AIKNAKNIYIFGIGESALIGLDLQYKLLRIHKNAMISLESHVQLSMSANISNDDIAIGIS 184 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 + G+T +V +A+ K+ GAK I IT +P++ L D I P E L S+RI+ Sbjct: 185 YLGKTKEVYSALSKCKEKGAKCITITKFGENPVSSLGDIKIQVPFVEKDLRIGAISSRIV 244 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 QLT++D FV +A+ N +++T +++ Sbjct: 245 QLTVIDILFVGLAKENFSDVEKYLKETRNMIE 276 >UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNS3_LACPJ Length = 292 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 17/267 (6%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R ++ + +I ++++ + A +I D+A A+ VS A + + K + FS FR Sbjct: 16 IRSYYPNLSVTDRKIADYIIADPIKTAAQSISDLAAAVGVSTATVSRFVKRISFSSFR-- 73 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDV---------VNKVFNITLRTIMEGQSIVNVDE 130 D+ + P E EA QDV FN ++ + ++ + Sbjct: 74 -----DFSRELTAAEPIEQTNAEAFQDVEKQTTFKGIAESTFNSIRSSLDQTSQVMTEAD 128 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + RA AR YG GGS D HKF+R G+ C D + +M A+ + D Sbjct: 129 LKRAVELLLNARSIGFYGLGGSAVAALDGYHKFVRTGIPCAHNSDYDMQLMQAAQMNASD 188 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V +V++H+GR + +I +T +SP+AK + S A E Sbjct: 189 VAVVISHTGRNQQTLQVLATLTSQSVPVIALTSFGNSPLAKDSTVAFISVAEEINYRSEG 248 Query: 251 ASARILQLTLLDAFFVSVA-QLNIEQA 276 ++ I Q++++D+ F+ A NIE A Sbjct: 249 LTSLIAQMSIIDSLFLMTAVHGNIEMA 275 >UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N1V0_9FIRM Length = 277 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 16/262 (6%) Query: 16 LAPYLRMK--QEGMTENESRIVEWLLKPGN--LSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + Y ++K Q T E I +++L+ L C+ + + E S A I++ SK L Sbjct: 1 MNSYAKIKEAQSSYTSTEKVIAKYILENAADVLKCSA--QSLGEKTGTSAAAIIRFSKKL 58 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAF--DEAPQDVV---NKVFNITLRTIMEGQSIV 126 G++GF L+ +L +QS++ ++ F DE D+V +K + + T+++ ++ Sbjct: 59 GYNGFSELKMSL----AQSKRAPEEKIDFIIDE-NDDIVTLADKCCRLNMNTVLKTYQLI 113 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + +++ A + A L+G GGS + DV+ K RIG + D H+ + + + Sbjct: 114 DTNQLDNAIKKLIAANTIYLFGVGGSAIVAQDVEQKLTRIGKKVIYNKDLHVQLTFSESM 173 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 + D L +++SG T + ++ K II IT +P++KL+D I+ P E + Sbjct: 174 NKEDAALFISYSGTTKGLVEIAKMIKNKNVPIISITQFKPNPLSKLSDIILQVPNEEKEI 233 Query: 247 LGRNASARILQLTLLDAFFVSV 268 S+RI L + D + V Sbjct: 234 RMGAISSRISSLVMTDLLYYGV 255 >UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escherichia coli O157:H7 str. EC4024 RepID=UPI00017F2FF2 Length = 285 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 17/262 (6%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G + + +T+ E RI +++ +I +A+A+ V EA I++ K LG+ Sbjct: 5 VGFNTLINTRINELTQTEIRIYQFIKNNRMRFIDMSIAKLADAMNVGEASIIRFCKKLGY 64 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDE--------APQDVVNKVF--NITLRTIMEGQ 123 G L++ L + +L + DE A Q N F N TL + E Q Sbjct: 65 KGLSELKTTLRLETDTDDTLLSKVTSLDEQTNSMTGIAQQLANNNYFAINETL-ALQEEQ 123 Query: 124 SIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSA 183 ++V RAA + A Q YG G S +++F+RI A D H M +++ Sbjct: 124 ALV------RAADYLSNAGQVYFYGIGMSAISVLYAKYRFMRIMANVDALIDNHTMTLNS 177 Query: 184 SLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPE 243 + + + DVV+ ++HSG T DV A++ K+ GA I I+ HS +++ AD ++ + Sbjct: 178 NNVGKKDVVVAISHSGETRDVVDALKRVKEKGAVTIVISKLQHSSLSQYADVVLLTGGTS 237 Query: 244 TPLLGRNASARILQLTLLDAFF 265 P +++ Q ++D F Sbjct: 238 NPYQSDSSTITAAQSFMVDVLF 259 >UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1Y9_BEUC1 Length = 307 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 131/274 (47%), Gaps = 5/274 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ LR + ++ R E +L S A I D+AEA S + + ++ + LG Sbjct: 16 GILAELRRLLPDLPDSVRRTAERVLADPVASVAGTITDLAEASGTSPSAVSRLCRRLGVD 75 Query: 75 GFRNLRSAL-EDYFSQSEQVLPSELAFDEAP----QDVVNKVFNITLRTIMEGQSIVNVD 129 G+ LR A+ D + + +++ P +DV + T R + + + +++D Sbjct: 76 GYPALRIAVVADATASASSPWEIDISRTIGPTDSLEDVAGTLGAATSRAVHDTLAGLDLD 135 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A AR+ LYG GS + A++Q + RIG+ ++ D H + A+LL G Sbjct: 136 VLRDVAHAVAGARRVHLYGVSGSAVMTAELQLRLHRIGIATWSFADVHEGLTGAALLGPG 195 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + V+++G T + + A A + +T + S +A +AD I+ + ET Sbjct: 196 DVAIAVSYTGETIETLEMLRAAGSRDALTVAVTGAPRSSLAAVADRILVTVTEETTFREG 255 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 +AR +LT+++ +++V QL E+ + +T Sbjct: 256 PLAARFSELTVVELLYLAVGQLTYERTTELLTQT 289 >UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=Deinococcus RepID=Q1J2N3_DEIGD Length = 290 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 129/260 (49%), Gaps = 12/260 (4%) Query: 16 LAPYLR---MKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L P LR + +E R+++ +L + I +++EA S+A +V++ + LG Sbjct: 8 LPPVLRRLHLLREEQGAATVRVIDQILMDPERFLSLTIAELSEAAGTSDATVVRLVQHLG 67 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD----VVNKVFNITLRTIMEGQSIVNV 128 F G++ + L + S + ++L + PQD ++ K+F+ + + + +N+ Sbjct: 68 FGGYQEFKLQLSRALAVSRK---ADLTVE--PQDASVTILRKIFDSSNTALDDTLEHLNL 122 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + A + AR +L G G S + Q++ LR+G+ C+A D + + SLL+ Sbjct: 123 EAFSAAVQAMTLARHIELIGMGASGVVALSGQYRGLRLGLSCRASTDPGTFLSTCSLLEP 182 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV++ V+ SG V A LA++ GA ++ +T +P++K+ + + AP Sbjct: 183 TDVLIAVSFSGTRPQVVQAARLARQAGAIVVALTGLGRTPLSKVVHHTLTVSAPGDRYRP 242 Query: 249 RNASARILQLTLLDAFFVSV 268 + +I Q+ +LDA F S+ Sbjct: 243 EGLATQIPQVAILDALFTSL 262 >UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A8RRF4_9CLOT Length = 289 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 120/238 (50%), Gaps = 3/238 (1%) Query: 49 AIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL---EDYFSQSEQVLPSELAFDEAPQ 105 +IK +A+ S A IV++ + +GF G++ L+ +L +S + + E+ D++ + Sbjct: 37 SIKQLADKTFSSAATIVRLCRKMGFDGYKELQKSLLYESALRRESTRPMEQEIKKDDSLE 96 Query: 106 DVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLR 165 ++VNKV + ++ + +V++D +++ +++ L+G G S + D+ K LR Sbjct: 97 ELVNKVTYKNIVSLDNTRKLVDLDILNQCVELLDRSQTVYLFGIGSSLLVARDMYLKLLR 156 Query: 166 IGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSY 225 + C D H ++ A ++ D+ L+V++SG T ++ A+ A +I I+ Sbjct: 157 VNKACVICDDWHAQLLQARNIRSCDLALIVSYSGLTEEMITCAREARLREAPVITISRFE 216 Query: 226 HSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 SP+ +LADY + A E S+RI QL ++D + + ++ +KT Sbjct: 217 QSPLVRLADYNLAVAATELIFRSGAMSSRISQLNMIDILYTAYVHKRYDECMEQFRKT 274 >UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NHI8_9LACT Length = 281 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 26 GMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL-- 83 TE + I E++ + K++ + S A V+ SK +G+ G + AL Sbjct: 13 AFTETDRSIAEFVFVNRQVVLESNAKELGDMTKTSAAAWVRFSKKMGYKGLPAFKVALAK 72 Query: 84 EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 E +E + + L ++ ++ K N+ + I E S+++ + +A F ++A+ Sbjct: 73 ETQSYTNEDDIETFLNPQDSLMGLLQKTENMLTQNIRETFSLLDYHALEKAIEFIHEAKT 132 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 L G GGS+ +C D HK RI D H +M + L + DVVLV++++G T Sbjct: 133 VFLLGVGGSSIVCLDFYHKMTRIHQNVMYDRDLHTLMPRIAQLDKNDVVLVISYNGETES 192 Query: 204 VKAAVELAKKNGAKIICIT-HSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 V + ++AK GA+I+ +T ++ S ++ L+D + P E + + ++R LT+ D Sbjct: 193 VNSIAKVAKTMGARIVGVTKYNLKSTLSTLSDIRLFVPVEEKEIRLGSITSRNSLLTITD 252 Query: 263 AFFVSVAQ 270 + +A+ Sbjct: 253 LLYYGIAK 260 >UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=1 Tax=Vibrio cholerae CT 5369-93 RepID=D0I0X8_VIBCH Length = 282 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 125/263 (47%), Gaps = 5/263 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L LR EG + + ++++ + + I ++A SEA ++++ + LGF Sbjct: 7 VNLLSRLRYGMEGYSPKLKTVADFIVSNADSAQYLTITELARDTMTSEATVIRLCRDLGF 66 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 G+ + R AL SQ + +++A ++ D ++ + ++ + +++ +I+R Sbjct: 67 KGYSDFRMALAIEISQPQFTKNNDVAKEDG--DRIDDATQSAITSLQDTSILIDRKQINR 124 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + +QA G G S+ + + + RIG + D HI M A D+ Sbjct: 125 ICQMIHQADNIHCVGVGASSIVGRYLSFRLTRIGKSSTMFEDTHIAAMRAVKSTPSDLWF 184 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T DV AKK + ++ +T+ HSP++ +D ++ + PE PL G ++ Sbjct: 185 AISSSGSTKDVVYVATRAKKQQSPVVSLTNIRHSPLSVTSDEVMVAARPEGPLTGGAFAS 244 Query: 254 RILQLTLLDAFFVSVAQLNIEQA 276 ++ L L+D + + QL E A Sbjct: 245 KVSALLLVD---ILINQLVAEHA 264 >UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUK3_9FIRM Length = 280 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 12/270 (4%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 E MT E I ++L+ + ++ A S A + +K +G+ G L+ L Sbjct: 12 ESMTATEQMIGRYILEHRHEVLEMNTLELGWASGTSGAAWTRFAKKMGYKGLPALKLDLA 71 Query: 85 DYFSQSEQVLPS-ELAFDEAPQDVVNKVFNITLRTIMEG---QSIVNVDE--IHRAARFF 138 ++++ +P +L D P+D + + + T +TI+E ++ +DE + +A Sbjct: 72 Q--DRTDEEMPEVDLFLD--PRDTLGALLHKT-QTILEQNLRRTYELIDEAVLAQAIDMM 126 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 A + L G GGS +C D+ HK RI D H++M + GDVVLVV++S Sbjct: 127 ASAHRLFLCGIGGSGIVCMDLVHKLTRINRPVTYDRDTHVLMAQMAHCMPGDVVLVVSYS 186 Query: 199 GRTSDVKAAVELAKKNGAKIICIT-HSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 G T V LAK+ GAKII IT H+ +P+A LAD + P E + + ++R Sbjct: 187 GNTHTVNQMAYLAKEQGAKIIAITGHNLKAPLASLADVCLFIPRDEKEIRLGSVTSRDGS 246 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L + D + VAQ ++ KT ++ Sbjct: 247 LIVTDLLYYGVAQRQFHATKEHLVKTRKMI 276 >UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n=3 Tax=Listeria monocytogenes RepID=C8JWL0_LISMO Length = 273 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 131/247 (53%), Gaps = 6/247 (2%) Query: 26 GMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED 85 ++++E ++ + +L + +I D+A V E+ IV+ S+ +G +GF++L+ AL Sbjct: 13 SLSKSEQKVAQLILSNPDEVENLSINDLALMANVGESTIVRFSRKIGLTGFQDLKIALVK 72 Query: 86 YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 Y + +Q + E +D+V + F + + + +S + +++ +AA+ ++A Sbjct: 73 YQTSQKQNITDE---SNEAKDLVYRQF---VDGLQDTKSFIEQEKLEQAAKMIHRAEHVY 126 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 + G S I + ++ R+G + PD H+ + +++++ D+V+ ++ SG T +V Sbjct: 127 ILSVGTSAFIAMQLSNRLKRLGKFVEFVPDGHLQSIYVTMVKKTDIVIGISKSGNTKEVI 186 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 +ELA ++GA ++ +++ +S I+++ D + + + E + SA + QL LLD Sbjct: 187 QNIELASQSGAPVVTLSNFINSKISQMGDVSLVASSKEFLSDAGSFSAEVSQLYLLDTLI 246 Query: 266 VSVAQLN 272 + +N Sbjct: 247 KVLVDIN 253 >UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKN4_PASMU Length = 286 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 7/286 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G L+ ++ NE RI +++LK + + + K +A +AVS++ I+K S+ LG Sbjct: 1 MGFLIKLKHTYPSLSPNEQRIADFILKHPHEVKSSSSKALANQIAVSQSAIIKFSQKLGA 60 Query: 74 SGFRNLRSAL-EDYFSQSEQVLPSELAFDEAPQ-----DVVNKVFNITLRTIMEGQSIVN 127 F + + A+ E Q Q P D ++ K+F + + E S+ Sbjct: 61 DKFSDFKLAISEALIRQETQSEPRVHLHDSITDKDDLSEIAEKLFVEKQQALKESLSLNA 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 + + R QA++ L G G S + D +K +IG+ D H + + L Sbjct: 121 IPYVARVVEQLMQAKRIQLMGIGNSALVAKDFFYKLTKIGLPVVTETDTHASLAMSQSLT 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 D++ +++ SGR ++ A E AK KII +T +P+ +LADY++ S A E+ Sbjct: 181 PQDILFLISFSGRHREILLAAENAKARQIKIIALTALTTNPLHELADYLLYSVADESTFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + ++R Q + D F+ + Q E AN + ++ A++ + G Sbjct: 241 SSSIASRTAQHAITDLLFMGILQQK-EHANDLILESRALIGQLNKG 285 >UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=Shigella flexneri 2002017 RepID=D2AGN5_SHIF2 Length = 333 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 124/258 (48%), Gaps = 7/258 (2%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + T NE +I ++L + + + + +A+ L +S++ IVK ++ LG GF L Sbjct: 74 IRNAESEFTGNEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLGAQGFTEL 133 Query: 80 RSALEDYFSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 R AL +S S + L S + D++ + + K+ + + ++ + + Sbjct: 134 RMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQ 193 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + +A + G GGS + D+ K ++IG R D H+ + L++GDV Sbjct: 194 KIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQ 253 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG ++ E A+K GA +I IT SP+ +LA + + + + ET + S Sbjct: 254 IAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMS 313 Query: 253 ARILQLTLLDAFFVSVAQ 270 R Q ++ D FV + Q Sbjct: 314 TRTAQNSVTDLLFVGLVQ 331 >UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=Micrococcineae RepID=A9WVK2_RENSM Length = 346 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 151/292 (51%), Gaps = 7/292 (2%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 A+ + +G+ L+ + M+ S+I +L++ +IK++A+ S A + + Sbjct: 30 AVDSAVGVVNRLKAQLPEMSGAMSKIARYLIEKPLAPLELSIKELADETGTSAATVTRFC 89 Query: 69 KLLGFSGFRNLRSALEDYFSQSE--QVLPSEL--AF--DEAPQDVVNKVFNITLRTIMEG 122 +L+G++G+ R + +S+ + +++ AF D++P+DV++ + N R++ E Sbjct: 90 RLIGYTGYAPFRVGVASDLGRSDARESWKTDIGRAFGPDDSPRDVLSTLMNAHARSLQET 149 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 +++++ + AR + D+YG GGS + ++Q++ RIG+ C + + + S Sbjct: 150 AAVLDLRLMKNLARRIALSEHVDIYGIGGSAVMAKELQNRLYRIGIPCHHCTEVYAGLTS 209 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASL + + ++++GRT + + A GA + ++++ +S +A+ AD+ I + Sbjct: 210 ASLQNSQCIAIGISNTGRTEETIQMLRQAGLAGATTVALSNNPNSTLAESADFQITTSVH 269 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG-AIVDFFSPG 293 E L + SA+ +QL +D ++ +AQ N +A + + A+ PG Sbjct: 270 EQFLQPDDLSAKHVQLLAMDLLYLLLAQENFPRATSQLAASAMAVAPHRRPG 321 >UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SX74_9RHIZ Length = 314 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E R+ + +L + + +A+ VSE + + + +G G R+ + L +QS Sbjct: 43 ERRVADVVLDDVKYAVDASNAALAQRAGVSEPTVTRFCRAIGCEGLRDFKLKL----AQS 98 Query: 91 EQVLPSELAFDEAP-----QDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 V LA AP N VF R + E + ++ E+ +AA +ARQ Sbjct: 99 LVVGALYLAKSPAPGSGNGMPFWNAVFGEARRALQEAERQLDPVELQKAAELIAKARQVT 158 Query: 146 LYGAGGSN-AICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 ++G GGS+ A+ + Q++ R G+ A D ++M M+AS L+ GD+V+ ++ +GRT +V Sbjct: 159 VFGLGGSSSALAQETQYRLFRYGITVNAQCDPYLMRMTASTLKPGDLVIAISATGRTREV 218 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 AVELAK A I +T + + +A+ D + PE P + ++R L ++D Sbjct: 219 IEAVELAKHYRANAIGVT-APDTELARACDVRLAVAVPEYPDTLKPTASRYAFLAMIDLL 277 Query: 265 FVSVA 269 V+ A Sbjct: 278 AVASA 282 >UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteriaceae RepID=A4WDW6_ENT38 Length = 274 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/273 (23%), Positives = 135/273 (49%), Gaps = 10/273 (3%) Query: 20 LRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 LR++Q G + + ++ ++L + I ++A SEA + ++ + LG G+ Sbjct: 9 LRLRQGVSGYSPTQQKLGSFVLNDPSRVLYLTITELARESDTSEASVTRLCRTLGCKGYT 68 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + AL Q E V P + D ++++ ++ + + +++ + + +AA+ Sbjct: 69 EFKMALA-LDVQREHV-PLK------KGDEIDEIVEESILALQDTSRLLDREILLKAAQA 120 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +Q+R +YG S I + +K LR+G Q + D H M+A+ L D+V+ ++ Sbjct: 121 LHQSRSVYIYGVAASAIIGDYLHYKLLRLGKPAQLFSDMHRASMNATTLTSDDLVVAISS 180 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T D+ V+LA+K GA ++ ++++ SP+ L+D ++ + PE PL +A++ Sbjct: 181 SGSTRDLLHVVKLARKRGAHVLALSNTPRSPLTSLSDMLLVAAKPEGPLSAGALNAKVGV 240 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + L++ ++ L+ + + Q A + Sbjct: 241 MLLVELLATTMISLDDRYGDASQQTASATLPLL 273 >UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEU1_PETMO Length = 269 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 127/244 (52%), Gaps = 10/244 (4%) Query: 27 MTENESRIVEWLL-KPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED 85 +T E + ++++ +PG++ +I +++ SE I +V K +G+SG++ + LE Sbjct: 13 LTNKEKQAAQYIIERPGDV-IHYSITELSNWAGTSETTIYRVLKKVGYSGYQKFK--LEL 69 Query: 86 YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 S L S+ +D+ + ++N T+ + + V+ D+I A+ +++ Sbjct: 70 ARELSTPTLDSK-----ESKDLFDMIYNRTVNALTDILRQVDRDKITHASEIIMNSKKLL 124 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 Y G S I D KF +G AY D H+ ++ AS L++ DVV+ ++HSG D Sbjct: 125 FYAVGRSFPIALDASLKFAALGFASTAYSDPHMQVIVASNLEKDDVVIAISHSGVIRDTY 184 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 + ++AK+ GA I +T +SP++K+ + ++ + A E P +RI ++ +++ + Sbjct: 185 KSAQVAKEAGAFTIGMTAGVNSPLSKIVNLVLYTSA-EMPQESEFTVSRIGEMFMVELLY 243 Query: 266 VSVA 269 SVA Sbjct: 244 NSVA 247 >UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=A6UCC0_SINMW Length = 296 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 125/263 (47%), Gaps = 5/263 (1%) Query: 11 PNGIG----LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVK 66 P IG + +R+++ + +++ ++ E +L I + AE VS+ +++ Sbjct: 8 PKSIGGNNNILEVIRLRRADLRKSDRKVAELVLADPKRVINATIAEAAEWAGVSQPTVIR 67 Query: 67 VSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 +G G+++ + L + S + + P V K+F+ T+ ++ ++ + Sbjct: 68 FCASIGCQGYQDFKLRLAQSLALGMSATHSVIDASDTPAQVSAKIFDYTITSLDWVRNHL 127 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + ++ RA +A + + +G G S + D Q KF GV C A DAH +M S+L Sbjct: 128 DPVQVSRAIDALSKASRIEFFGFGASGIVARDAQQKFPLFGVPCGAETDAHQQIMVVSML 187 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 + GDV +V++++G T + A+++G ++I I S P+ + D ++ E Sbjct: 188 KPGDVAVVISNTGATLAIIETARRARESGCQVIGIVGS-DGPLVEFCDIVLMVETLENTN 246 Query: 247 LGRNASARILQLTLLDAFFVSVA 269 + +RI LT++D SVA Sbjct: 247 IYTPTISRIAALTVIDILSTSVA 269 >UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=Q7MD38_VIBVY Length = 278 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 130/268 (48%), Gaps = 6/268 (2%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR E ++ + +++L+ + I D+A SEA +V++ + +G+ G+ + Sbjct: 11 LRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYKGYSDF 70 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 R AL SQ+E + + D+ + + ++ + +++ + R + Sbjct: 71 RMALAVDLSQTESRQQNHI-----EGDICDVSAQSAVDSLQDTAKLIDRKSLARIVERVH 125 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 QA G G S+ + + ++ +RIG + + D H+ MSAS +GD+ V+ SG Sbjct: 126 QAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSG 185 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T +V A LA K ++ +T+ HSP++ L+ ++ + PE PL G ++++ L Sbjct: 186 STKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASKVGALL 245 Query: 260 LLDAFFVSVAQLNIEQANINMQKTGAIV 287 L+D S+ + E + ++Q+T +V Sbjct: 246 LVDVLVNSLLESYPEYKD-SVQETAEVV 272 >UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Gammaproteobacteria RepID=B8KWX3_9GAMM Length = 337 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 125/271 (46%), Gaps = 13/271 (4%) Query: 4 SEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAM 63 S+ S++ I L + G+ ++E ++ + +L + + +I +A VSE Sbjct: 41 SDGQSSMAYDINLLEDINQSLPGLNKSEVKVAQAILSDPDAATRMSIASLASRAGVSEPS 100 Query: 64 IVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQ 123 + + K G SGF + + L + + + F + K+F+ + ++ + Sbjct: 101 VNRFCKRFGASGFPDFKLRLATSMVSGVRYISRAVEFSDDIDTYPGKLFDNAISALVAAK 160 Query: 124 SIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSA 183 + +I RA F QAR+ +G G S A+ D +HKF R V + D + M A Sbjct: 161 EQLPTGDIARAVDFLAQARRIHFFGLGTSAAVTKDAEHKFFRFNVPVTNHQDPLMQRMLA 220 Query: 184 SLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPE 243 + GDV +++H+GRT + ELA++ A ++ +T + SP+A+ +D I Sbjct: 221 AAGSVGDVFFIISHTGRTRALVEVAELARQTEATVVSLT-APQSPLAQESDCAI------ 273 Query: 244 TPLLGRNA------SARILQLTLLDAFFVSV 268 T +G N ++R++QL ++D V Sbjct: 274 TLTIGENTEEYLPMTSRLVQLAVIDVLATGV 304 >UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L9A2_9FIRM Length = 336 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 117/247 (47%), Gaps = 12/247 (4%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +T + ++ +++ + +I +AE VSEA I + + LG SG+ + + A+ Sbjct: 67 LTRSGKKLADYIFANTTETQYLSISALAENSGVSEATITRFCRKLGLSGYNDFKLAI--- 123 Query: 87 FSQSEQVL--------PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 ++S+ V PS + ++ D+ K+ + + ++ E +++ EI RA Sbjct: 124 -AKSDHVTDMGEPSGSPSTITSQDSLPDIFQKLLSANILSLTETFDLLDEKEISRAVDLL 182 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 Y A G G S+ + + +F R D+H+ M+S +L DV+L ++S Sbjct: 183 YGAHHVYCLGNGSSSVMAMEAWARFSTASTRFIHIADSHMQMLSIALATPQDVILFFSYS 242 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G T D++ + +A K +I +TH S A AD + E+PL + +AR+ Q+ Sbjct: 243 GATRDMEDIMNIAHKRKIPVILVTHFPKSQAAAFADVTLLCGYNESPLQSGSIAARMGQM 302 Query: 259 TLLDAFF 265 ++D F Sbjct: 303 LIIDCLF 309 >UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BB20_PARDP Length = 280 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 22/281 (7%) Query: 4 SEFDSALPNGIG-LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 + FD A+ G + +R T E R+ E +L + + +I D A VSE Sbjct: 2 APFDGAVLTARGEMLDRIRQSLASFTPAERRVAEAVLDTPSTAITWSISDAARIAKVSEP 61 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD-----VVNKVFNITLR 117 I++ + L GF + R L ++ Q P LA + D +V+ +F + Sbjct: 62 SIIRFCRRLDCDGFPDFRLKLAQQLAK-HQPAPQPLARPGSGNDDPLAAMVDDIFQRAGQ 120 Query: 118 TIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAH 177 I E + +++ + A +AR+ D+YG G S + ++ QH+ + + AY D Sbjct: 121 AIEEARRDLDLGALRAAVAMLGKARRVDIYGYGSSGFMASEAQHRLAALAIPAVAYSDPT 180 Query: 178 IMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII 237 + M SA LL GD++ V++ SG TS + + +E+A+K GA ++ I+ S +A LAD + Sbjct: 181 LQMHSAPLLGPGDLLFVLSFSGLTSYLISNIEIARKAGAPVLAISPK-GSIVASLADVNL 239 Query: 238 CSPAPETPLLGRNASARILQLT--------LLDAFFVSVAQ 270 A R +S R+ T LLDA F ++A+ Sbjct: 240 NLNA------YRQSSGRMAVPTGRVAPMYVLLDALFAAMAE 274 >UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X148_ENTFA Length = 295 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/270 (22%), Positives = 121/270 (44%), Gaps = 7/270 (2%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R+K+ ++ E +I ++ + +L ++ +A + VS++ + + K +G+SGF+ Sbjct: 10 IRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKKIGYSGFQEF 69 Query: 80 R------SALEDYFSQSEQVLPSELAFDEAPQDVV-NKVFNITLRTIMEGQSIVNVDEIH 132 + S + F V ++ + + KV + ++ + + + Sbjct: 70 KIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNATQFLTKELLD 129 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 Y A+ +G GGS+ + D HKF+R RC D H+ + + L D V Sbjct: 130 NVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFVTKLTSEDCV 189 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +HSG+T + KK AK+I +T + S +A L+D I E + + Sbjct: 190 FIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEEGLFRAESLA 249 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQK 282 +RI LT++D + + N +Q +++K Sbjct: 250 SRISYLTVMDILYTNTMYHNFDQNADSLKK 279 >UniRef50_C2L0R5 Possible transcriptional regulator RpiR n=1 Tax=Oribacterium sinus F0268 RepID=C2L0R5_9FIRM Length = 314 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 127/266 (47%), Gaps = 10/266 (3%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 M E +I ++L+ + C ++A VS A + + K++G+ FR+ R + Sbjct: 39 MNEAMQKIADYLIDTEDKKCVERASELARRSGVSTASVSRFVKMMGYKEFRDFRLKIVME 98 Query: 87 FSQSEQVLPSELAFDEAP-----QDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQA 141 + + +EL ++ P + +F+ ++R + E I++ D + A ++A Sbjct: 99 KQEENRQEENELNYNGEPITGDAHSICKTIFSKSVRELEETWGILDFDTMQTVADLIHEA 158 Query: 142 RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 R+ + G G S + + RIG + DAH ++ S++++ D+++ V++ G++ Sbjct: 159 RRIVVIGVGRSKVTMEALYSRLYRIGYPIMMFSDAHEIVNITSIMEKKDILICVSNFGQS 218 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN----ASARILQ 257 V AKK G +++ I+ SP+AK++DY + S N +S + Q Sbjct: 219 KSVVEGARRAKKRGIQVVGISSIKESPLAKISDYTLFSAYDYNNAQDGNLFDPSSENLAQ 278 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKT 283 L ++D ++ VA N ++ NI KT Sbjct: 279 LVIVDCLYMLVAHKN-KRKNITYFKT 303 >UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAG5_FUSMR Length = 283 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 1/236 (0%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL-EDYFSQ 89 E +I ++L+ I+D++E + S A I + +K +GF F L+ + +++ + Sbjct: 21 EQKIALFILENTFAVIDMTIEDMSEKIGTSVASISRFTKKIGFENFYLLKLGIAKEFVNS 80 Query: 90 SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGA 149 S + + + + D+ V + E N D++ + A L+ Sbjct: 81 SNKTISLNVNKNSNATDIYTNVAKTNSAILEESIEYFNTDKMEEISEIILNANHIYLFAM 140 Query: 150 GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVE 209 G S + + +KF+R+G++C D H ++ AS+L + DV L+ +HSG DV +E Sbjct: 141 GASGILAKESWYKFIRLGLKCSMIEDFHSQLLQASILDDTDVALIFSHSGINKDVLTLLE 200 Query: 210 LAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 + + A I IT+ +P ++ D + TP+ S+RI QL ++++ + Sbjct: 201 IINETPAYSIGITNYARTPFSQSVDICLFFSENSTPMDKVGFSSRIPQLIIIESLY 256 >UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2D0_9BACL Length = 284 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 132/267 (49%), Gaps = 1/267 (0%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 E + E+E + +++L +I VA+ S A I ++ + LG SGF +L+ L Sbjct: 15 EQLPESERKAAQYILTASAEVSGLSIHAVADKAGTSAAAITRLCRSLGLSGFPDLKMRLS 74 Query: 85 DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 ++ ++ ++ E Q+V+ K + +L+ I + + + I + F +A Sbjct: 75 VDNAKPQRPGYYDIERGETIQNVIQKTVSNSLQAIQDMMLHLQPELIEQVVDSFREASVI 134 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 +YG G S + AD K+LR+G + A D H++ + + G + + +++SG T +V Sbjct: 135 HMYGVGASAIVAADAAQKWLRLGKQAFALQDEHLIAAALASAPPGALFMGISYSGNTKEV 194 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASARILQLTLLDA 263 +A+K G + I ++ + +A+LAD ++ +P APE L +S+R+ QL ++D Sbjct: 195 LQLFRVAQKYGVRTIGLSRFGNHKVAELADLMLYTPQAPEATLRSGASSSRLAQLVMIDI 254 Query: 264 FFVSVAQLNIEQANINMQKTGAIVDFF 290 F + A E+ + + +T F Sbjct: 255 LFFAYASTQYEETILRLSQTHEATAFL 281 >UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8A7_MACCJ Length = 285 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 131/262 (50%), Gaps = 9/262 (3%) Query: 25 EGMTENESRIVEWLLK-PGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 + T E RI + +++ P + P IK++A SEA IV+ SK LG SG + ++ L Sbjct: 13 DSFTPVEKRIADVVIEYPEKVVNLP-IKEIAHLSNTSEAAIVRFSKRLGLSGIKVVKVEL 71 Query: 84 -EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 + + +++ +P+++ + + + KVFN T++ + + +++ I AA+ A+ Sbjct: 72 ARELHTIADKKVPTKIELTDDEEVMKEKVFNNTIQALYNTEKVISAKVIDEAAQAITSAK 131 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL---QEGDVVLVVTHSG 199 + ++G G S + D+ K + I Q+ A ++ + +LL + GDV+ V + + Sbjct: 132 RVMIFGVGNSRVVATDLHVKLMNID---QSAILATDLLSAITLLGHYEAGDVLFVTSETS 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 + + + AK+ G KII +T + SP ++AD ++ E + + R QLT Sbjct: 189 KNKVITDICKYAKEKGIKIILLTQKFSSPAIRMADIVLAMAKEENEINLGYMTVRTAQLT 248 Query: 260 LLDAFFVSVAQLNIEQANINMQ 281 ++D ++ V + NMQ Sbjct: 249 IVDVLYLRVCAYLKDTVLSNMQ 270 >UniRef50_A6M3B1 Transcriptional regulator, RpiR family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M3B1_CLOB8 Length = 247 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 21/215 (9%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR----NL 79 ++ + +NE+ +++++L+ I+D+++ S A IV+ L +SG+ NL Sbjct: 11 RKFLNKNENYLLKYILENIEKVSNMRIQDLSKETFTSTATIVRFCNKLSYSGYSEFKANL 70 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 R+++ D + +++ + FD+ I + + ++N I + Sbjct: 71 RNSI-DRENNHKKISDNMFLFDD----------------IAKTKDLINDSLIDEVISIIH 113 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A + D YG G S +C D+ KF + C+ + D+ IM +AS L +++ ++ SG Sbjct: 114 DAEKIDFYGEGSSKDVCIDISRKFHLVEKNCRYFNDSSIMYSTASDLDSKTLIIAISMSG 173 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLAD 234 TS V AV +AK G KIIC+T ++ +A L+D Sbjct: 174 ETSQVIKAVNIAKTRGCKIICVTSVGYNTLANLSD 208 >UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC5_9ACTN Length = 283 Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 117/234 (50%), Gaps = 6/234 (2%) Query: 49 AIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL---EDYFSQSEQVLPSELAFDEAPQ 105 +++ +A+ S + I++ K LGF+G++ + L + V +++ D++ + Sbjct: 38 SVRGLADVTFSSPSSILRFCKRLGFAGYKEFQRELIAELALLGDKKDVALEDISMDDSVE 97 Query: 106 DVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLR 165 +V KV +RTI ++ + R A +AR +L+G G S + D+ K +R Sbjct: 98 RIVGKVMKSNVRTIEATARTLDYTVLERCAARLKRARAVNLFGIGASRLVAHDLAQKLMR 157 Query: 166 IGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITH-S 224 + C+ Y D H ++ A + EGD+ + ++SG T +V A+++ ++ +T Sbjct: 158 VDKECRLYDDWHDQLLCAKNMHEGDMAIAFSYSGLTQEVLDCTAEAQRHNCPVVAVTKVD 217 Query: 225 YHSPIAKLADYIICSPAPETPLLGRNASA-RILQLTLLDAFFVSVAQLNIEQAN 277 S +A +AD ++ A E PL+ A A R+ QL ++DA + + + E+A Sbjct: 218 GSSKLATMADAVLGVAASE-PLVRSGAMASRMAQLMVVDALYAAYVASDYERAT 270 >UniRef50_A4E6N7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6N7_9ACTN Length = 301 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 111/217 (51%), Gaps = 10/217 (4%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 +G +E+E RIV+++L+ + + ++ A A SEA + + + LGF FR+ + +L Sbjct: 31 HQGYSESEQRIVDYILEHQSEAPRLTAAQLSRAAATSEATVSRFCRKLGFGSFRSFQFSL 90 Query: 84 -EDYFSQSEQVLPSELAFDEAPQDVVN----KVFNITLRTIMEGQSIVNVDEIHRAARFF 138 D SQ + L E++ D Q + N KV L ++G ++ D + Sbjct: 91 ARDLESQRNEGLTDEVSLDNMEQSLKNILAAKVSE--LNATIDG---IDHDTLAAVVHAL 145 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 A + G +NA+ D KF ++G+RC A + + A L+ GDV++++++S Sbjct: 146 KHAGVIEFAAVGNTNAVALDATFKFSQLGLRCMASTISETSIGFALTLRPGDVIVLISNS 205 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADY 235 G++ + + A+ GA ++ I+ SP+A+LADY Sbjct: 206 GKSRRLNRMAKAARNCGATVVVISSDSKSPLARLADY 242 >UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KYQ0_EXISA Length = 267 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT +E +I ++L+ N + I D+A A+A S I + K +G + +L+ ++ Sbjct: 12 MTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGSYSSLKLMMQKT 71 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 +++ LP + + + + I +++ DE+ + +R L Sbjct: 72 LTETN--LPQTTSLEPMQRSYI--------ELIQTTAHLIDQDELLAICKEITSSRSVHL 121 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 YG G + + +++++ R+G+ D+H M+M AS++ DVV+ ++SG + +V Sbjct: 122 YGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASIVTSEDVVIAFSNSGESREVVQ 181 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADY 235 A++LAK++G + HSP+A+L DY Sbjct: 182 AMQLAKESGCTTVAFVGYQHSPLAELVDY 210 >UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=Ralstonia RepID=B2UK47_RALPJ Length = 280 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 12/242 (4%) Query: 1 MSQSEFDSAL-PNGIGLAPYLRMKQEGMTENESRIVEWLLK-PGNLSCAPAIKDVAEALA 58 MS + S+L P L +R + ++ E ++ +W+L+ PG + P + +A Sbjct: 1 MSAPQDTSSLAPPSTDLRERIRAARPSLSPAERQVADWVLRQPGTVLSLP-VAAIAREAG 59 Query: 59 VSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVV---NKVFNIT 115 VS+ +++ + +G G + + L + ++ P A AP +V +V T Sbjct: 60 VSQPTVIRFCRSMGCHGLSDFKLRLAQGNAAHDK--PRGAA---APSNVPRSGTRVLQDT 114 Query: 116 LRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPD 175 + + + + + A A + DLYG G S + D Q KF R G+ AY D Sbjct: 115 IDALAAMRDRFDPLALDAAVALVDTAHRIDLYGFGSSGVVARDAQTKFFRYGIPANAYSD 174 Query: 176 AHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADY 235 +++ MS ++LQ GDVV+ ++ SG +++ AVE ++ G +I +T + SP+A LAD Sbjct: 175 PYLVSMSLNVLQAGDVVIAISKSGALPELQTAVERVRELGVHVIAVT-APGSPLAALADV 233 Query: 236 II 237 ++ Sbjct: 234 VL 235 >UniRef50_C0C1I3 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1I3_9CLOT Length = 288 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 5/237 (2%) Query: 38 LLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL---EDYFSQSEQVL 94 LL P + I + A SEA V++++ LG++G+ L+ L E F + E +L Sbjct: 31 LLHPQEAALHSIITESAGRAGCSEATFVRLAQKLGYNGYAQLKQMLLPAEAAF-EPETLL 89 Query: 95 P-SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSN 153 P ++ E Q V+ VF+ R + + +++ + + +A + GAG + Sbjct: 90 PYGDIGRGEDSQAVLCSVFHAAARALDDTLDLLDRKVYEESLSYITRAGKILSAGAGDAY 149 Query: 154 AICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKK 213 KF RIG+R D + +M AS ++ GDV+L+++HSG T + E AK Sbjct: 150 TAAYSAYLKFSRIGLRAVCPADFDVQIMEASGMKRGDVLLLISHSGSTRTLCQVAETAKA 209 Query: 214 NGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQ 270 A+II +T+ SP+AKL+D +I + A + RI +L +++A ++S+ Q Sbjct: 210 KKARIITVTNYPLSPLAKLSDCVIRTAAFTKNPCNETVAKRIPELCIIEALYISILQ 266 >UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JBJ8_FRASC Length = 299 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 128/277 (46%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 P G +LR +T + +I + +L + D+A+ S A +V+ + Sbjct: 18 PGPGGTIAHLRACLPTLTPSGRKIGQLILDDPREIVHLTVTDLADRTGTSVATVVRFCQD 77 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 LG GF +L+ L E+ L + ++P ++ K+ + T + E V+ Sbjct: 78 LGLKGFADLKIRLAGEAIPPERGLHEAVTHADSPATILEKILHSTESALSETTRTVDRAA 137 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 RA A + L GAG S + D ++F +G+ +A DAH+ ++A LL Sbjct: 138 FTRAVDALQCADRVLLIGAGTSAPLAQDAAYRFRTLGLLAEAPADAHVQHVAARLLPPAS 197 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 L ++H+G+T + A A+ GA I +T + SP+ +LAD + + + ET Sbjct: 198 ACLAISHTGQTRETLAGAAAARAAGATTIALTSFFRSPLTRLADVALVAGSSETNYRVEA 257 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 S+RI+ T+LDA FV+V ++A + T ++ Sbjct: 258 MSSRIIHATVLDALFVAVHLAQPDRAQKAQELTAEVL 294 >UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15N75_PSEA6 Length = 282 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/279 (23%), Positives = 143/279 (51%), Gaps = 5/279 (1%) Query: 16 LAPYLRMK--QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 ++ + ++K ++ ++ +E ++ +++L N + +++A + VS++ +VK ++ LG+ Sbjct: 1 MSTFTKIKAIKDTLSNSELKLAKFVLSSSNAVRDLSSQELANVVGVSQSSVVKFAQKLGY 60 Query: 74 SGFRNLRSALEDYF--SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+ + + D + SE L ++ +++ + V K+ + + + E +++ Sbjct: 61 KGYPAFKLGVIDALNSTASEGNLHGKITLNDSFKQVSEKLLSSKVAVLTETKNLNEEAAF 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 H+A A++ + G GGS + D +K ++G+ PD H + A+ L E D+ Sbjct: 121 HQAVELLKSAKRILICGLGGSALVGKDFSYKLQKLGMLAIEEPDMHAQLAFAATLSENDL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V ++ SG T ++ V+ AK+N K+I +T +P++ LAD + S A E + Sbjct: 181 VFAISESGSTREIVNVVKQAKQNSCKVITVTRYGATPVSDLADIKLYSVAEEESARLSSI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 AR Q ++D F+++ Q + Q ++KT ++V F Sbjct: 241 MARTAQEFIIDILFIAITQ-SSRQGRQLLEKTNSVVSDF 278 >UniRef50_A7G380 Transcriptional regulator, RpiR family n=1 Tax=Clostridium botulinum A str. Hall RepID=A7G380_CLOBH Length = 179 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 91/173 (52%) Query: 118 TIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAH 177 TI + + +V+ +++ A + A LYG G S + D Q+K LRI + D+H Sbjct: 4 TINDTKELVDDEKLLEAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSH 63 Query: 178 IMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII 237 + + + + DV + +++SG T +V AVE AKKNGA I IT S ++ +AD + Sbjct: 64 LQLAVSVHITNRDVAVAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINL 123 Query: 238 CSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 P+ E L S+R QL + D+ F+ +A+ N+++ N+ T +V+ Sbjct: 124 NIPSIEKDLRIGAISSRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVL 176 >UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family protein n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A71F3 Length = 300 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 9/249 (3%) Query: 50 IKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVN 109 + ++A VSE +V+ + LGF G R+ + + + L + ++ ++V Sbjct: 46 VNEIAVFAGVSEPTVVRFCRALGFHGLRDFKLRVAQQVALGSVALHRNVTAVDSIDEIVG 105 Query: 110 KVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNA-ICADVQHKFLRIGV 168 KV + +++ + + ++I RA A + D YG G ++ + AD Q + R G+ Sbjct: 106 KVLRSSADILLDIERQLPREQIKRAISALGSAHRVDCYGVGTTSGFVAADAQARLFRFGI 165 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 + Q Y DA++ M SA+ L GD V+ V+H GR + AV +A++ GA +I I +P Sbjct: 166 QAQTYTDANMQMFSAATLSPGDGVIAVSHFGRMPFLLEAVRVARERGAVVIGICEP-GTP 224 Query: 229 IAKLAD--YIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 +A D PA +G +A I L ++D V VA E+ +++ + Sbjct: 225 LAGECDIPLTFALPASVNAYIGSDAC--IAHLAIIDILIVGVA---FERGAAGIEQLRRL 279 Query: 287 VDFFSPGAL 295 + SP L Sbjct: 280 QNVLSPHGL 288 >UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteobacteria RepID=B7LQI9_ESCF3 Length = 301 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/270 (22%), Positives = 130/270 (48%), Gaps = 7/270 (2%) Query: 26 GMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED 85 +T E RI +++L + I ++A S+A + + ++ LG R L+ L Sbjct: 31 ALTATEKRIAQFILDDVPAAVELPIAELARLTQTSQASVTRFARALGCKDVRELKVKLAQ 90 Query: 86 YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 + ++ + D D V ++ + + + ++++ I +A + QARQ Sbjct: 91 SLAIGQRFI-----LDVPDLDGVQGIYESIISVLETHRRSLDMNAISQAVSWLSQARQIL 145 Query: 146 LYGAGGSNAICA-DVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 G GG + IC+ ++Q++ R+G+ + DA +M M S + DVV+V++ G T ++ Sbjct: 146 ALGTGGGSTICSQEIQYRLFRLGLPVVSQNDALMMRMMCSAVMPQDVVIVLSLGGYTPEI 205 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 + +A++ GA++I IT + +P+A+ D ++ E+ + + +R L ++D Sbjct: 206 IESAAIARQYGARVIAITPA-QTPLAEQVDLVLPLLVQESDYIFKPTPSRYAMLAMVDVL 264 Query: 265 FVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 +A N QA +++ ++D GA Sbjct: 265 ATELAMANKAQAKDRLRRIKLVLDSHRGGA 294 >UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUN7_9ACTO Length = 294 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 12/261 (4%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 GL P L T E R+ E +L + I +AE S + + + LG + Sbjct: 10 GLVPTL-------TPAEQRVAEQVLADPLGTHRGTIGQLAERSRTSLTTVTRFCRALGMA 62 Query: 75 GFRNLRSALEDYFSQSEQV-----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 G++ LR AL ++ +++ D+ Q V+ + +R + E S +++ Sbjct: 63 GYQELRFALATEAGEASSRDWTLGAAADIGPDDPMQSVLANLVATDVRALQETASQLDLA 122 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + AR+ DLY GS A+ D+Q + ++G+ C + D H + SA+LL Sbjct: 123 VAEQLVDAITTARRVDLYAVSGSAAVTNDLQRRLHQLGITCHLWIDVHDALASATLLGPE 182 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++HSG T +V + A+ GA +T+ S I +A ++ + A E Sbjct: 183 DVAIGISHSGETIEVIEPLTAARDAGAVTAAVTNFPRSAITSVAGLLLTTSAREATYRSG 242 Query: 250 NASARILQLTLLDAFFVSVAQ 270 + S R QL ++D VAQ Sbjct: 243 SLSGRHTQLLVIDCLVTGVAQ 263 >UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=Anaerococcus RepID=C7REF2_ANAPD Length = 279 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/271 (23%), Positives = 133/271 (49%), Gaps = 3/271 (1%) Query: 20 LRMKQEGMTENESRIVEWLL-KPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 ++ + E T ++++I +++L KPG + + K +A+ S++ I++ + +G+ G+ + Sbjct: 7 IKERSEDFTPSDTKIAKYILDKPGEVIKINSQK-LADLTGTSQSAIIRFVQKIGYKGYTS 65 Query: 79 LRSALEDYFSQSEQVLPSE-LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 L+ + E L SE ++ D+ D++ K + +I + ++++ D+I +A Sbjct: 66 LKLDIAKSLENDEINLKSEVISADDKVGDIIEKSKINVISSIEKTYALIDEDQISKAIDN 125 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 A L G G S +C D +K R G + DAH + + ++E D+++ +T+ Sbjct: 126 IVYANFVYLAGIGSSGLVCEDFLYKLQRSGKKAFYETDAHTNLSLLTNIKEDDLLICITY 185 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 + + +V A E AK GAK+I IT + +A ++D +I P E + S+R Sbjct: 186 TALSKEVLIAAEYAKTIGAKLISITKAGRGKLANMSDILIPIPEIEKKMRYGAISSRFAS 245 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 + D F N+++ N+ + + D Sbjct: 246 QIITDILFYGYISKNMDEVVKNLMVSKELTD 276 >UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDH7_9ACTO Length = 342 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 10/276 (3%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R G+ +E RI E +L + + + ++A A S +V+ + +G+ +++L Sbjct: 16 VRAALPGLRPSERRIAEAILDDPHATAGLTVAELAAACDTSTTTVVRFYQRIGYGRYKDL 75 Query: 80 RSALEDYFSQSEQVLPSEL--------AFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 R L ++ EQ+ + L D + N TL +I + I++ D + Sbjct: 76 RLDLTREATR-EQLETANLPAASGDIDRDDTIDDIIAKVAANETL-SIADTAEILDRDAL 133 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 RA AR+ D +G G S + D+Q K RIG ++ D +A L E V Sbjct: 134 ARAVDCVLNARRVDSFGVGASGFVGLDLQQKLTRIGRTALSWLDTDAAWSAAVTLDEQCV 193 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + ++H+G T+ + +A GA I IT+ ++ +A+ AD ++ + A ET Sbjct: 194 AIAISHTGTTAATVEFLAMAAAEGATTIAITNHDNTALAETADVVLTTAARETRFRSGAL 253 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +RI QL ++D F VA+ + + + ++KT A V Sbjct: 254 GSRIAQLMVVDCLFTGVARASYDASMSALRKTYAAV 289 >UniRef50_P46117 Uncharacterized HTH-type transcriptional regulator in aarA 3'region n=5 Tax=Enterobacteriaceae RepID=YARA_PROST Length = 282 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 120/258 (46%), Gaps = 9/258 (3%) Query: 30 NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ 89 E R+ +LL + A + ++A+A VS A +++ ++ +G+ G+ + + DY S Sbjct: 20 TEQRLARFLLDSRDNFVAMNVAELAQAAGVSSASVIRFTRQMGYRGYSDFKV---DYLSD 76 Query: 90 SEQVLPSELA-----FDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 +Q L+ +D+ Q ++ K + + I + +++ + + A+ +A++ Sbjct: 77 EKQYKAESLSGSLNPYDDTEQ-IIAKSGQMFITAIEKSLELLDPNTMDEIAQKIVEAKRI 135 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 L+G G S + D+ +K +R+ PD H+ + +S + D+V+ +T G T D+ Sbjct: 136 VLFGVGTSAIVAYDIFYKLIRVNKYALFSPDLHVQLSYSSNVDADDLVIAITAKGNTPDI 195 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 ++LA K G I +T +LAD ++ E + ++LQ+ + D Sbjct: 196 NHMLKLANKKGCSTIVLTRFGQDEAVRLADLVLPYFYDEQLFQTGVITPQVLQMVVFDTL 255 Query: 265 FVSVAQLNIEQANINMQK 282 F L E + +QK Sbjct: 256 FFKYLTLTNEDVVLALQK 273 >UniRef50_C7TGD6 Transcriptional regulator, RpiR family n=3 Tax=Lactobacillus rhamnosus RepID=C7TGD6_LACRL Length = 277 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 7/240 (2%) Query: 48 PAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDV 107 +++++++ + VS A I + ++ LGF+ F L+ AL + + ++ ++ Sbjct: 36 SSLRNLSDKIGVSTATISRFARQLGFASFDQLKLAL---LKEIDNTTNGDVETNDNSLAS 92 Query: 108 VNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIG 167 K N + + S + D+I + A + L+G G SN I H FLR+ Sbjct: 93 ARKTVNANIAALEGTLSFLTQDQIDHSVNLLLDANKVALFGLGSSNVIAKAAYHTFLRLP 152 Query: 168 VRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHS 227 + A D H+ +MSA+ L E DV +V++H+G +D+ A V+L + II +T S Sbjct: 153 LTLIADNDYHMQLMSANKLTEHDVAIVISHTGNDTDILALVDLLSAHQVPIIAVTSYATS 212 Query: 228 PIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 P+AK + S + +T + QL + D + + + + + +KT A+V Sbjct: 213 PLAKRVSDVFFSISEDTRYRSDALISMTSQLAIFDVLYTEL----VRRMGLQSEKTIALV 268 >UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0W9_9CLOT Length = 310 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 7/251 (2%) Query: 23 KQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSA 82 K ++++E ++ +++ + +K VA+ VSE I++ SK +G GF L+ Sbjct: 38 KYMALSKSEKKVADFIKNFNGKAEKLTMKKVAKEAGVSEPSIMRFSKSIGLDGFNELKYC 97 Query: 83 LEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQ-----SIVNVDEIHRAARF 137 L E + FD +D ++ + + T+ E Q +++ Sbjct: 98 LMKTKKDDEGTMKPLHGFDINREDTIDMIPGKIVMTV-ENQINSMLESISLKSYSDMINC 156 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 A+ D+Y S + D+ K L +G+ + Y D+++ +SA L DV + +++ Sbjct: 157 IINAKNVDIYSVENSVSSANDLATKLLYLGINVKMYTDSYLQKISAYNLTSEDVAIGISY 216 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG + D ++ AKK GA + IT+ S I K AD +IC+ + + L G +R +Q Sbjct: 217 SGNSKDTVEMIKTAKKRGATTVVITNYKDSKIVKYADILICTSSDQM-LYGDAIFSRAIQ 275 Query: 258 LTLLDAFFVSV 268 L + D ++ + Sbjct: 276 LVINDMIYMGI 286 >UniRef50_C0BYY2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYY2_9CLOT Length = 280 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 102/199 (51%), Gaps = 7/199 (3%) Query: 44 LSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQ---VLPSELAF 100 L+C+ I D+AE VS A + + ++LG+ F+ R +L++Y + V SE+A Sbjct: 22 LNCS--IGDIAEKSNVSAASVTRFVQILGYKNFKAFRQSLQEYLLAGQDQLSVTSSEIAM 79 Query: 101 DE--APQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICAD 158 E AP+ + N V + + + S+++ + + A+ AR G G S Sbjct: 80 SESSAPESICNYVIQSEIEMLRDTLSLMDFPTMDKVAKKICSARHVIFIGEGRSYIAAQS 139 Query: 159 VQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKI 218 ++F R+G+ C Y D H M+ + + Q D+++ +++ G + V ++ A+++G Sbjct: 140 ACNRFDRLGILCSCYGDPHSMLPAIGMAQPEDLIVGISNFGHSRPVVNCIKYAREHGVPT 199 Query: 219 ICITHSYHSPIAKLADYII 237 + IT S SP+A+ A+ +I Sbjct: 200 VAITSSQDSPLAQQAESLI 218 >UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBM1_9CLOT Length = 266 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 118/227 (51%), Gaps = 19/227 (8%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 ++ K ++ E I +++++ G+ I D+A+ + S A I + +K +G F ++ Sbjct: 7 VQRKYNEFSDKEKDIADYIMQHGDKIKNINITDLAKEIGTSGATITRFAKKIGCDSFVDM 66 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLR----TIMEGQSIVNVDEIHRAA 135 + L S +V E P + + +F+ T + I + +++ +EI + Sbjct: 67 KIKL-----GSNKV--------ELPINDEDGIFSYTYQYYNEVIERTKMLIDKEEIFKVV 113 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 +A+ +YG G S C ++ + LR+G D+H+M++++S++ E D+V+ + Sbjct: 114 NEIKKAKNIYIYGVGSSGLTCKEMMQRLLRMGFNVHCISDSHMMIINSSIVSENDLVIGI 173 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLAD--YIICSP 240 + SG T +V ++ +K+NGAKI+ IT S ++K +D +I+ +P Sbjct: 174 SISGETQEVIHSLRKSKENGAKIVSITGFEGSTVSKYSDIKFIVYNP 220 >UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=Lactobacillus crispatus RepID=C2KD15_9LACO Length = 279 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 111/209 (53%), Gaps = 3/209 (1%) Query: 29 ENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFS 88 + E +I ++L+ + I +A + VS A I + ++ + S F +L+ L + Sbjct: 16 QQERKIALFILQDPQFIQSANINQLASTIKVSNATITRFARRVNCSSFTDLKVKLAAAAA 75 Query: 89 QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYG 148 S+ + + + + ++V++ R + E Q+ +++ ++ + + A++ YG Sbjct: 76 SSQ---VNTITNQDNSKTTAHQVYDFYNRVLSETQNKLDIKQLKKIIQLIKSAKRVYFYG 132 Query: 149 AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAV 208 G S + + LR+G+ A +++ M M++S++ + D+++ ++ +G T + A+ Sbjct: 133 IGSSGYTSLEATQRLLRMGISAFAETESNNMFMTSSIISKDDLIIAISSTGSTDSLVRAI 192 Query: 209 ELAKKNGAKIICITHSYHSPIAKLADYII 237 ELAKKN A ++ +T +SP+A+LAD ++ Sbjct: 193 ELAKKNKATVVALTSYDNSPLAQLADIVV 221 >UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Tax=Gammaproteobacteria RepID=HEXR_ECOLI Length = 289 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 116/240 (48%), Gaps = 1/240 (0%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 E ++++E ++ E +L + + +I +A VSE + + + + GF + + L Sbjct: 12 EHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLA 71 Query: 85 DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 + + + D++ + K+F + T+ + ++ I+RA QA++ Sbjct: 72 QSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKI 131 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 +G G S A+ D +KF R V D + MS +GDVV++++H+GRT ++ Sbjct: 132 AFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNL 191 Query: 205 KAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF 264 +LA++N A +I +T S +P+A+ A I PE + +R+ QLT++D Sbjct: 192 VELAQLARENDAMVIALT-SAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVL 250 >UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNY6_HAHCH Length = 285 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 131/264 (49%), Gaps = 7/264 (2%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 +LR ++ + ++E ++ E +L+ N I D+A VSE IV+ + + F F++ Sbjct: 10 WLRQNRDTLRKSEQKVAECVLRNPNDVIHMRIVDLATEAGVSEPTIVRFCRTICFDSFQS 69 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + +L + ++ P ++ Q + K+F+ ++ + + + D I +A + Sbjct: 70 FKVSLAQQLASMQRQTPFRARSGDSLQQLGAKIFSDVQSSLQQVFNQLAWDRIEQACAWI 129 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 + + +G G S A+ AD Q KF R+ A PD M+ A L++ DV++ ++HS Sbjct: 130 SNSPRLYFFGYGASAAVAADAQQKFFRLKPSTHACPDPDTQMLIAGLVETNDVIIAISHS 189 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPE-----TPLLGRNASA 253 GRT+++ + A+ +GAK++ I+ S +A +A+ I E TPL R A Sbjct: 190 GRTNNLIQSCMQARASGAKVVAISPP-QSALANIANLNIGVSVDENADAFTPLASRLAHL 248 Query: 254 RILQLTLLDAFFVSVAQLNIEQAN 277 IL T+ F + + ++++ N Sbjct: 249 MILD-TIASNLFQKLDEQHVQKLN 271 >UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBX8_9LACT Length = 285 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 131/273 (47%), Gaps = 1/273 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R K+ + ++E +I E +L+ + D+A S A +++ + +G GF L Sbjct: 9 IREKKITLPQSEKKIAETILRDPVKVIQMSATDLATEAGSSSAAVIRFCRSIGIKGFTEL 68 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + L + L +++ DE + V K+ T E ++++ +I R + + Sbjct: 69 KLQLSADSQGIKDNLYTDILADENLEQVKKKMLINTNHLFKETNNVLDTKQIERVSELLH 128 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 ++ LYG G S+ + +D+Q KF R+G D H+++ S ++ E V V++SG Sbjct: 129 ESSIIYLYGLGASHIVASDIQQKFSRMGKIVVCSLDQHLLVTSMAVAGENAVFFGVSNSG 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASARILQL 258 +V A + +AK+ G K + +T++ + ++ AD + + A E PL + + Q+ Sbjct: 189 EKKEVLALMIMAKELGLKTVALTNNTENALSLEADIALKTAFAHEAPLRSGATISLLTQM 248 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +D F A N + N++K+ A + ++ Sbjct: 249 YAVDILFYDYASKNYDLTVTNLEKSKAAIQRYN 281 >UniRef50_UPI0001BC57B3 oxygen-independent coproporphyrinogen III oxidase n=2 Tax=Fusobacterium RepID=UPI0001BC57B3 Length = 538 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 5/220 (2%) Query: 54 AEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSE-----QVLPSELAFDEAPQDVV 108 AE + IV+ SK LGF GF + + +L + ++ E+ + + + Sbjct: 295 AENIYQGGTNIVRFSKKLGFKGFPDFKLSLSQDIGNRKAESHVNIMHEEIKPTDTFEIIG 354 Query: 109 NKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGV 168 KV + I + E+ +A + +AR+ L G G S + D K L +G Sbjct: 355 KKVATENTMAVNNTYEITDFKELEKAVKMISEARKIMLAGVGFSGIVAKDFHFKLLELGK 414 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 + D H+ + + + E DV+ V++HSG+T +V + AK KII +T SP Sbjct: 415 QTLFENDTHMQLSYLATMNENDVLFVISHSGKTLEVFNLAKAAKNRKVKIITLTSVVQSP 474 Query: 229 IAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSV 268 I +L D + + ++ S RI QLT++D ++ + Sbjct: 475 IRELGDIKLSTVEMKSDFRATALSPRISQLTVIDMIYIKL 514 >UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=Lactobacillales RepID=D0RS60_9STRE Length = 277 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 16/249 (6%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +T E +I ++ L L+ + + V++ L VS + + +K GFSG+R ++ Sbjct: 16 LTHLEKKIADYFLSAEALTADLSAQAVSQRLYVSVPSLTRFAKKCGFSGYRQFIFEFQES 75 Query: 87 FSQSEQV---LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 S+S+ V L + D +++NK F++ I E Q + D ++ A R + Sbjct: 76 SSESKNVSRDLTRNVLSDYG--ELLNKTFSL----IDEEQFLRVGDMLNNAGRVY----- 124 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 +YG G S + +++ +F+R+G+ C+A D H++ M+ +L +V+ ++ SG T Sbjct: 125 --IYGQGSSGLVAREMEFRFMRLGMVCKAITDDHMIRMNRVMLNPDCLVIGISISGETKI 182 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 + A++ AKK GAK + +T + + + D ++ + G N S + L ++D Sbjct: 183 ITQAIQNAKKVGAKTVLVTSNNSDDLRQQCDELVLVAVKKHLAQGNNISPQFPVLVVMDI 242 Query: 264 FFVSVAQLN 272 F+ L+ Sbjct: 243 FYAYYMDLD 251 >UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J381_DEIGD Length = 286 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 10/215 (4%) Query: 50 IKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVN 109 I ++A V E+ + ++ + LGFSGF + AL SQ++ + F A + V Sbjct: 53 ITELAATAGVVESAVTRLCRRLGFSGFHAFKIALSGDVSQAQGAAEATDPFSVAARQAVQ 112 Query: 110 KVFNITLRTIMEG-QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGV 168 + EG + + + + R A+ A + D+ G S + +K R+GV Sbjct: 113 AI---------EGTRQVADPAALERVAQAIAAATRVDVVGQSNSGLSAQFLANKLARVGV 163 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 AY D H+ ++A+ VV+ T SG T D + LA GA + +TH SP Sbjct: 164 PAFAYTDPHLAAVAAATQSPRGVVVGFTRSGSTIDTVQTLRLAASKGACTVAVTHRASSP 223 Query: 229 IAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 + + A ++ + +PE+PL G S+ + Q+ L++A Sbjct: 224 VTRYAREVLATSSPESPLAGGALSSLVSQVLLVEA 258 >UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=Firmicutes RepID=B1R0U2_CLOBU Length = 284 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 4/241 (1%) Query: 29 ENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFS 88 E E +I +++LK G I ++AEA S+A + + + GF +L+ L S Sbjct: 20 EAEKKIADYILKYGTKLIEMTISELAEAAGTSDATVTRFCRKCNMKGFHHLKITLAKELS 79 Query: 89 QSEQVLPSELAFDEAPQDVVNKVFNITLRTIME-GQSIVNVDE--IHRAARFFYQARQRD 145 +S Q + ++ D + +++ + NI I E Q+I+ ++E + A Sbjct: 80 ES-QKEDTRVSGDVSEENIKESLNNILFNKIEEMKQTILTINEEKFKEILQILRNAGIVQ 138 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 G + + D +KF ++GV A + L+E DVV+ +++SG + + Sbjct: 139 FVAVGNTIPVALDGCYKFNQVGVASVANTIWETQIAYTYNLKENDVVIAISNSGASKRLI 198 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 +E+AK+ GA I IT+S SP+AKL++Y I + E L +RI +T+++ F Sbjct: 199 DVIEIAKEKGAVTIAITNSDKSPLAKLSNYHIKTATREKLFLEEYYFSRISAMTVIEILF 258 Query: 266 V 266 + Sbjct: 259 L 259 >UniRef50_B1QVU2 Transcriptional regulator, RpiR family n=9 Tax=Clostridiales RepID=B1QVU2_CLOBU Length = 275 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 17/224 (7%) Query: 51 KDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNK 110 K++++ L VSEA + + SK GF G+R E + E F E P +V Sbjct: 42 KNISKKLFVSEAALSRFSKKCGFKGYR-------------EFIFLYEQNFVEKPSNVTTN 88 Query: 111 VFNITLRTIME----GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRI 166 L T E ++++ +++ R + F Q ++ +YG G S +++ +F+RI Sbjct: 89 YTKQVLDTYQELLNKSYALLDEEQMVRITKLFNQKKRVYVYGRGSSALAAQEIKLRFMRI 148 Query: 167 GVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYH 226 GV ++ D+HIM M+ LL +V+ ++ SG+T +V ++ AK A + IT Sbjct: 149 GVNIESIVDSHIMKMNFVLLNSDCLVIGISVSGKTDEVLDSLRAAKSRNATTVLITSRKE 208 Query: 227 SPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQ 270 + D II E G+ S + L ++D F+ Q Sbjct: 209 KEFEEFCDEIILLAVKEHLDNGKAISPQFPILVMVDIFYAHFLQ 252 >UniRef50_Q89XK4 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89XK4_BRAJA Length = 318 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 4/229 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R ++ +E R+ LL + + ++A + VSE + + S+ +G G R+L Sbjct: 35 IRQSAPSLSPSEQRVAMALLADVEFAIHASNAELARSARVSEPTVTRFSRSVGCRGVRDL 94 Query: 80 RSALEDYFSQSEQV--LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + L + LP + D A + VF R I + + ++I RAA Sbjct: 95 KVRLAQAMAVGRIYVELPPHVGTDLARPALWRSVFQEIRRAIAAAEEGLRKEDIERAAEA 154 Query: 138 FYQARQRDLYGAGGSNAICA-DVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 + + +G GG + + A +VQ++F R+G+ D +M M A+ L E DVV+ ++ Sbjct: 155 ISRCSKLAAFGVGGGSTLAAMEVQNRFFRLGIAVSHTSDPSLMRMIAATLGEEDVVVAIS 214 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 +G S+V A +AK+ GA ++ IT S +A +AD + PE P Sbjct: 215 TTGAASEVIEAAGIAKQYGALVVAITRP-QSRLASIADIALGVHVPEAP 262 >UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X566_COMTE Length = 282 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 E +T E R+ + +++ + + ++A VS+ +V+ K LG+ G + L Sbjct: 10 ETLTPAEKRVGKLVIENPRRFASMSTSEIASECFVSQPTVVRFCKGLGYGGLTQFKQKLR 69 Query: 85 DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA----ARFFYQ 140 S + S + + +V KV + ++ T+ ++ V I RA A + + Sbjct: 70 GDRSDGVPYVHSSVDAGDTSFNVALKVVDSSIATLALFRTYVPKISIERASNTLAAAYSE 129 Query: 141 ARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGR 200 R YG+G S + D Q +F R+G A D + +++A+ +EGDVV+ ++ SGR Sbjct: 130 QRSLSFYGSGHSGVVAQDAQLRFSRLGFNSTALNDGYSQVLNAASRKEGDVVVALSCSGR 189 Query: 201 TSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTL 260 T ++ +V++AK+ GA +I +T S +P+A + + + E S+R+L L + Sbjct: 190 TKELLESVDVAKRQGATVIAVTGS-GTPLATMGSIHLATDHLEDIDRYLPMSSRLLHLVV 248 Query: 261 LDAFFVSVA 269 +D +VA Sbjct: 249 IDIVATAVA 257 >UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=16 Tax=Enterococcus RepID=C2H8J8_ENTFC Length = 286 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 13/275 (4%) Query: 25 EGMTEN----ESRIVEWLLKPGNLSCAPAI--KDVAEALAVSEAMIVKVSKLLGFSGFRN 78 E M E+ E ++ +++ GN+ P + ++AEA +S +V+ SK +GF + Sbjct: 12 ESMMEDYSSAEKKLANYII--GNIEKVPTMTANELAEASGLSAPTVVRFSKKIGFQSLTD 69 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + + S++ +E+ + NK+ N I E I+ + I + Sbjct: 70 FKITISTELQTGIDEGFSDIEANESFYSIKNKLGNNAQVAIKETVDILEEETIQKVVECL 129 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 A LYG G S+ + D+ K+ R+G D H+++ ++ V+ +V++S Sbjct: 130 ETAESVFLYGVGASSLVVEDILQKWSRVGKPIIFEKDIHVLLPQLVSNEKKKVLWLVSNS 189 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL-- 256 GR++DV A ELAK +II +T ++P++K+AD ++ + P+ + R+A+ L Sbjct: 190 GRSTDVVALAELAKNMNIEIIALTQFGNNPLSKIADVLVQTSRPK-EITNRSAATNSLLA 248 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKT-GAIVDFF 290 Q +D F N E + ++KT AI D+F Sbjct: 249 QFATIDIIFYFYMAKN-ESLSEKVKKTREAIQDYF 282 >UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulator ybbH n=7 Tax=Bacillaceae RepID=YBBH_BACSU Length = 283 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/279 (22%), Positives = 128/279 (45%), Gaps = 12/279 (4%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 GLA MK + + +E ++ +++L + + + +++ S+A ++++ K LG Sbjct: 5 GLAIIQSMKHK-LPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLK 63 Query: 75 GFRNLRSAL-----EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 GF++L+ + + F ++P E P + K ++ I + +++ Sbjct: 64 GFQDLKMRVAGDLAKPTFQGYRDIVPHE----PLPS-ISEKTAGNAIQAIQDTSDLMDYK 118 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ RA +A G G S + D Q K+LRI + A+ D H++ + + Sbjct: 119 ELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKD 178 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+V ++ SG T ++ +AK+ G I +T + ++ LAD + + L+ Sbjct: 179 DIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRS 238 Query: 250 NA-SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 A S+R+ QL ++D F+ +A E + KT A + Sbjct: 239 AATSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAI 277 >UniRef50_A0YBK7 Transcriptional regulator n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBK7_9GAMM Length = 271 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 1/213 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +++ ES I +L + + D+A AVS+ MI + + LG S F + + L Sbjct: 5 LSKAESSIARAILADPDAAVNSTTADLARIAAVSDPMISRFCRTLGCSSFPDFKVRLAKS 64 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 + ++ + + K N + +S + I + ++++ ++ Sbjct: 65 LVSKASFISEAVSKGDDAALYIEKRINANQAALEYIRSKLKPAIIEQTVAALGRSKRIEI 124 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G GG+ AI D QHK R+G+ AY D + M+A+ E VVLV++ +GRT + Sbjct: 125 FGMGGAAAIAKDAQHKLFRLGIPTVAYEDHLMQRMAAAAADENTVVLVISFTGRTRAMIE 184 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICS 239 ++AK + A +I IT+ SP+AKLAD I S Sbjct: 185 IADIAKNSQATLIAITNP-KSPLAKLADITITS 216 >UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAC9_9ACTN Length = 270 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 11/211 (5%) Query: 52 DVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKV 111 D++ L V EA IV+ + LG GF L+ +L E A ++ ++ Sbjct: 40 DLSRELGVGEATIVRFCRKLGLGGFTELKF-----------LLSVENEEHTAARENSGEI 88 Query: 112 FNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQ 171 +I + +I S+V+ +I A + +G G S + + + R G R + Sbjct: 89 KDILISSIKMTDSMVSSKDISDVVDLAGAASEVFFFGIGMSGLSASMGESRLFRFGKRTK 148 Query: 172 AYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAK 231 A +AH M ASL E +++ V+ SG T D+ AV LAK++GAK++ IT S +A+ Sbjct: 149 AITEAHAQNMQASLCDENSLIVAVSISGETIDLIEAVSLAKESGAKVVAITSYLRSTLAE 208 Query: 232 LADYIICSPAPETPLLGRNASARILQLTLLD 262 LADY++ S + S + QL +LD Sbjct: 209 LADYVLLSFGKPNYINAGAFSTVVSQLYILD 239 >UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W838_ATOPD Length = 304 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 120/265 (45%), Gaps = 8/265 (3%) Query: 20 LRMKQEGMTEN----ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 +R++ E +N E I++++L +I +A S + +V++ K LG G Sbjct: 4 VRLRLEEYRKNASSAERDIIDYILSDPEAVVGQSIHKLAAQTYTSASTVVRLCKKLGCGG 63 Query: 76 FRNLRSALEDYFS---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 ++ + AL + +S + + + ++ KV + ++ +++ + Sbjct: 64 YKEFQQALIYELAVSNKSNDIAVGGVIAGDTTDVIIEKVTAKNISSLELTMQLLDAQVVD 123 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 QA L+G G S + D+Q K +R+ + C D H ++ A + D+ Sbjct: 124 SVVSLMMQAHSICLFGMGASLLVARDLQLKLMRLNINCNLSDDYHSQLLYAKNMSREDLA 183 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITH-SYHSPIAKLADYIICSPAPETPLLGRNA 251 +VV++SG T + +AK NGAK+I IT S + +DY++ E + Sbjct: 184 IVVSYSGLTREAIECAWIAKANGAKVISITRGGIDSELIHRSDYVLGVAETEHIMRSGAM 243 Query: 252 SARILQLTLLDAFFVSVAQLNIEQA 276 S+RI QL ++DA F + N E++ Sbjct: 244 SSRIAQLNVVDALFAAYVNRNYEKS 268 >UniRef50_A5IPI4 Transcriptional regulator, RpiR family n=54 Tax=Staphylococcus RepID=A5IPI4_STAA9 Length = 266 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/260 (21%), Positives = 123/260 (47%), Gaps = 16/260 (6%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 Q T+ + RIV ++ + G I +A A+ S A + + S L + F++L+ Sbjct: 11 QHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDYENFQDLK--- 67 Query: 84 EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 F+ +++ +E + +P ++ ++ + I + ++ D I +R Sbjct: 68 ---FNIQQEM--TETVIENSP--IIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRH 120 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 G G S + ++ +R+G++ D+H+M +SASLL D+ + +++SG TS+ Sbjct: 121 ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE 180 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 + +A E+AK +GA ++ IT+ S + AD ++ + RN + + + Sbjct: 181 LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQ-----SRNTDHQFINTQIATL 235 Query: 264 FFVSVAQLNIEQANINMQKT 283 F + + ++ + N N+ +T Sbjct: 236 FLIDIVSYHLLE-NTNLSQT 254 >UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA31_9ACTN Length = 281 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 127/277 (45%), Gaps = 15/277 (5%) Query: 20 LRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +R+KQ + + E ++E +L +I ++A VS + I ++ K LG G++ Sbjct: 6 VRLKQYRDNASPAERELIERILDDPESISGLSIHELAAYAFVSPSTITRLCKKLGLKGYK 65 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV---NVDEIHRA 134 + L + + S++ D AP D + R ++ +V N E + A Sbjct: 66 EFQHLLIYDLALLRESSSSKIE-DLAPTDTSRQTIEKVTRDNIDSLRLVEKLNDPETYEA 124 Query: 135 A-RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AR +L+G G S D+ +K LRIGV C D H ++ AS D+ + Sbjct: 125 CVDLMSDARTINLFGMGASLLSARDMHYKLLRIGVSCNLIDDWHGQLLCASNSGPEDLSI 184 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHS-YHSPIAKLADYIICSPAPETPLLGRNAS 252 +++SG T +V V A++ G K+I IT S + S +A+ AD ++ + E + + Sbjct: 185 AISYSGLTEEVNVCVGRARERGGKVIAITGSAFDSKLARQADEVLLVGSTEPLMRSAAMA 244 Query: 253 ARILQLTLLDAFFVSVAQLN-------IEQANINMQK 282 +RI QL ++D F S N +EQ I Q+ Sbjct: 245 SRIGQLGVIDILFKSFVNRNYARFSEVLEQNQIRKQQ 281 >UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=Roseobacter sp. GAI101 RepID=B7RLA4_9RHOB Length = 317 Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 3/265 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR + E ++ ++ A I ++A VS +++ + LG GFR Sbjct: 35 LRRHDGHLATQEQKVANYVKAHLEDISAMTIAELAGHCDVSTPTVIRFCRTLGCDGFREF 94 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDV-VNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + L + S Q L ++ + A D +N++ + + ++ + + RA Sbjct: 95 KLRLAQNLAVSMQYLSADPQPEPADGDTAINQILGGIYASANVMRRQIDPEVLDRAKSAL 154 Query: 139 YQARQRDLYG-AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 + R G GGS+ + + ++F R+G+ + D++I+ M A+ LQ GDV+ +++ Sbjct: 155 LKTRHLLFAGIGGGSSNVSQEAANRFFRLGIPSFSTSDSYILQMRAATLQAGDVLFLISA 214 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG + A E+A GA ICIT S + +A + + I PE + + ++R + Sbjct: 215 SGEADAIVGAAEIAGGYGATTICITKS-GTRLANVCNIPILIDLPEDRDIHKPTASRYIH 273 Query: 258 LTLLDAFFVSVAQLNIEQANINMQK 282 + ++DA +SVAQ + N+++ Sbjct: 274 MIIVDALAMSVAQDLAHETTENLRR 298 >UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Clostridiales RepID=C2L140_9FIRM Length = 285 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/261 (22%), Positives = 122/261 (46%), Gaps = 5/261 (1%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 T+ E ++ +++L+ + +I D+AE V + + + K + G++ + L Sbjct: 17 TKAEKKVADYILQNPDQVLFMSISDLAETCKVGDTSVFRFCKTMNVKGYQEFKMTLSLSM 76 Query: 88 ----SQSEQVLPSELAF-DEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 +S++ ++ D ++ KV T+ +I E S+++ +++ A +A+ Sbjct: 77 RGNGKESKEGDGGNVSLQDNNIAELAGKVLEETIDSIKETHSLLDFNKVTEAMNALSKAK 136 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 + +G G S +KF RI + +MSA+ ++ GDV ++ ++SG T Sbjct: 137 RILFFGVGASMLTAMKAMNKFHRIEPKVYCSEMVSQQLMSAATMERGDVAVIFSYSGATR 196 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 D+ +LAK++GA ++ IT S + D ++ A L + SA I QL L+D Sbjct: 197 DIVEIAKLAKESGATVVSITRFQKSELTDYTDILLLCGANVGSLQKGSTSAEISQLFLVD 256 Query: 263 AFFVSVAQLNIEQANINMQKT 283 + + + E N ++KT Sbjct: 257 IMYTEYYRRHYEYCNQILEKT 277 >UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AK74_SEBTE Length = 284 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/247 (22%), Positives = 121/247 (48%), Gaps = 8/247 (3%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +T++E +I +++K + D+++ + V +A +++ SK LG+S F L +++ Sbjct: 21 LTKSEKKIANFIMKNFEKTKTMTSYDISKKVNVGQATVIRFSKKLGYSSFNELINSINKL 80 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTI---MEGQSIVNVDEIHRAARFFYQARQ 143 E +L ++ + K+ N + I +E + +E+ A A + Sbjct: 81 --DQEDILEKNISLGDDIATTNTKIANQYIDVIKLTLELNPVYVFEEVIEA---IIAAER 135 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 + G G S + D +K R+G+ D H+ S L + D++++++ SG T + Sbjct: 136 IVVLGIGNSAIVSTDFVNKLARVGMNAFTNLDTHLQFSMISNLGKNDLLILISDSGETRE 195 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 + A +LAK+N +II IT + + +D+I+ + + + L ++RI Q T++D Sbjct: 196 IIEAAKLAKQNKTRIISITKFTKNKLHAYSDFILKTASFDINLRLDATTSRITQFTIIDM 255 Query: 264 FFVSVAQ 270 F+++ + Sbjct: 256 IFINILK 262 >UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI5_9CLOT Length = 294 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 114/227 (50%), Gaps = 8/227 (3%) Query: 50 IKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD--- 106 I+D+A VSEA + + K +G+ +R + LE S++E+ S + E ++ Sbjct: 48 IRDLAVESEVSEATVSRFVKAMGYENYRAFQ--LEVTKSKAERRKGSLKGYAEVTEEDNA 105 Query: 107 --VVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFL 164 + K+F ++ + + ++++ D + RAA +AR+ ++ G S ++ + Sbjct: 106 PGICRKIFESNIQALQDTLTVIDYDALERAADLIARARRLCIFAQGRSKVTANSIRLRLH 165 Query: 165 RIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHS 224 R+G+ Y D H +++SL+ DV + ++ GR+ + ++ A G+ II +T Sbjct: 166 RLGIEGTLYTDPHEQAIASSLMGPEDVAVGISTFGRSRSILVSIRRAAARGSSIIGVTSY 225 Query: 225 YHSPIAKLADYIICSPAPETPLLGRNAS-ARILQLTLLDAFFVSVAQ 270 ++P+ K AD ++ + + G S A + Q+ +LD ++ VA+ Sbjct: 226 QNTPLEKEADILLRTVNNDEADFGSEPSCASVTQMVMLDCLYMLVAK 272 >UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2J8J9_FRASC Length = 293 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/261 (23%), Positives = 117/261 (44%), Gaps = 3/261 (1%) Query: 5 EFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 E D+A P + +R ++ E R+ +L ++ ++A+ S A + Sbjct: 10 EGDAAAP---AVLERIRALSASLSSAEQRVARQVLADPVAMIHQSVSELAQVSGSSPATV 66 Query: 65 VKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 V+ + LG G++ L+ AL E+ L E++ + P ++ KV + E Sbjct: 67 VRFCQSLGLRGYQELKLALIRETLPVERQLVDEVSAADGPDEIAGKVLGGAASALTEAAR 126 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 ++ + A A + G S + D ++ +GV + DAH+ ++A Sbjct: 127 GIDGGVLAAIADLVVAAPRTLFVAVGTSAPLAMDAAYRLTTVGVDARFAGDAHVQHVTAR 186 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 +L GD+ + V+H+G T++ AA+ A GA IT SP+ +L + + + ET Sbjct: 187 MLAAGDLCVAVSHTGSTAETLAAMRAAVDAGAHTAAITSFARSPLTELVRHAVVVGSRET 246 Query: 245 PLLGRNASARILQLTLLDAFF 265 ++RI+ L++LDA F Sbjct: 247 AYRIEAMTSRIVHLSVLDALF 267 >UniRef50_Q4L9T6 Similar to transcriptional regulator n=2 Tax=Staphylococcus RepID=Q4L9T6_STAHJ Length = 268 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 119/236 (50%), Gaps = 10/236 (4%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 +T+ + +I+E++ I +A A+ S A I + S L ++ F++++ L+ Sbjct: 14 LTKMDKKIIEYIQTHELDENFSTINSLAYAIGTSPATITRFSGKLNYANFQDMKFNLQH- 72 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 +SE+V+ + AP +V + I + ++ ++I R A RQ + Sbjct: 73 -EKSEKVV------ENAP--LVQLIHRYHQNIIQQTGEFISEEKIKRLAHNLKTCRQVNF 123 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 G G S ++ ++ +R+G++ DAH M +SASLL D+ + +++SG T ++ Sbjct: 124 AGLGSSGLTASEFYYRTMRMGIKGSVSTDAHQMKISASLLSSRDMFVAISNSGETLELIE 183 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 A ++A+ GA ++ IT+ S + K AD ++ + A + + +++I L LLD Sbjct: 184 AAKIARNQGAYVVVITNFEGSALTKNADLVLITTAQSSNNDSKFINSQIATLFLLD 239 >UniRef50_UPI000169311A hypothetical protein Plarl_08670 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169311A Length = 267 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 18/231 (7%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L ++ K +E E +I ++LL + IK++A+ VS A I + SK + Sbjct: 7 SLLKTIQSKYSSFSEKEKKIADFLLSSPAAAAQCHIKEIADQTGVSVASITRFSKKVLCQ 66 Query: 75 GFRNLRSAL-EDYFSQSEQVLPSELA--FDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F L+ L + + ++ L EL + E D+ + + N L+ ++ I Sbjct: 67 SFVELKLKLARESYDHTKDELDVELKNQYKEMFNDIESLIENEPLKEVLSL--------I 118 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A R F +YG G S + ++ R+G +A D H+M++ + LL++ DV Sbjct: 119 KKAKRLF-------IYGLGSSGLAAQEFNYRLSRMGFYSEAVTDPHLMIIRSVLLEKDDV 171 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 V+ + SG+T D+ ++E AK AK+I T +P+ K+A +I + P Sbjct: 172 VIAFSRSGQTKDLLKSLEAAKGKKAKLIAFTAFGDTPLTKMAHKVIWTIHP 222 >UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=Lactococcus lactis RepID=A2RL41_LACLM Length = 283 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/267 (22%), Positives = 122/267 (45%), Gaps = 3/267 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R T E +I +++ + G + ++VA + S A +V+ S+ LG+ GF L Sbjct: 7 IRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGYDGFSQL 66 Query: 80 RSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + L ++ + ++ E+ E P + NK+ + + ++ DEI A Sbjct: 67 KQKLSASYAVHEDDEDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEIMAAVAL 126 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +A ++G G S+ + D+ KF RIG + DAH+ + S S+ + + ++ Sbjct: 127 IDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHLFVSSLSISDRKTIFIGISM 186 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL- 256 G T +V + + II IT S + +++DYI+ S + E + A+ ++ Sbjct: 187 KGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAATMSLMA 246 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKT 283 QL ++D F + ++ ++KT Sbjct: 247 QLYVVDILFYMFVSEHFTESYDKLEKT 273 >UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AH41_LEIXX Length = 289 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 14/267 (5%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 ++ E+RI + +++ I ++A S+A I + + L +SG+R R A+ Sbjct: 15 LSATEARIAQTVIEHPQRVVDLTIAELAAVCDASQASIARFCQALRYSGYREFRLAVAAA 74 Query: 87 FSQSE------QVLPSELAFDEAPQDVVNKV-FNITL---RTIMEGQSIVNVDEIHRAAR 136 S+ + ++ SE+ ++ Q+VV K+ + TL RT E ++ + + Sbjct: 75 TSREQATRERFELTESEIDPSDSLQEVVAKIAYQETLAIERTARE----LDAEALDAVVA 130 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 A + DLYG G S D+Q K RIG+ D+H+ + SA+L + G+V + + Sbjct: 131 AIIAASRVDLYGIGSSILTAQDLQQKLSRIGLTAFCSVDSHLALSSAALQKPGNVAIAFS 190 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 HSG T + A+ +A+ GA + IT+ S IA ++D ++ + A E ++R Sbjct: 191 HSGETRETNHALAVARAAGATTVAITNVPESSIAAVSDLLLMTQARENFYRSGAMASRTA 250 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKT 283 QL L+D FV VAQ +Q +++ T Sbjct: 251 QLALVDFLFVRVAQRLYDQMTDSLRLT 277 >UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DJX2_STACT Length = 288 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/278 (23%), Positives = 126/278 (45%), Gaps = 3/278 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L ++R + + +T+NE I ++LL+ + + + + S A +++ + LGF G Sbjct: 6 LIIHIREQMKHLTKNEQHIAQFLLEHPEKVLEMSAQTLGDVTKTSSATVIRCAHKLGFKG 65 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F +L+ +L Q E E+A DE+P+++ K+ + T+ + ++ + Sbjct: 66 FVDLKLSLSRNLPQHEAHNYKEIAQDESPREIKRKLLSRAAYTLETTEVLLEDQALEALV 125 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV- 194 Y ++ ++G G S+ + D+ KF R G+ DAH++ + + D VL Sbjct: 126 DKLYDVQKIVVFGVGASHIVAEDIYQKFTRAGMEVIQSADAHVLATVLAGYHKKDNVLFI 185 Query: 195 -VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA-PETPLLGRNAS 252 V++SG + +A GA + IT S +A AD ++ A E L S Sbjct: 186 GVSNSGHNQETLRLAHVAHYYGATVAAITSRSDSKLAGEADIVLLHDASSEKSLRLAATS 245 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + I QL +D F + + + ++ +T V+ + Sbjct: 246 SLIAQLMTVDILFYTYLSKDYQAHVAHLSETKKAVEMY 283 >UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCR9_9FIRM Length = 289 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/248 (20%), Positives = 128/248 (51%), Gaps = 5/248 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE-D 85 ++++E ++ ++L + +++A +SE +++ ++ LGF G+++ + L + Sbjct: 17 LSKSEQKLGNYILTHPKDVTDMSTSALSQACDISEPTLIRFTRRLGFQGYKDFKLHLSAN 76 Query: 86 YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY----QA 141 + S P ++ +++ ++ K+ + T+ ++ + ++ +++ A + Y Q Sbjct: 77 FISNQIDSTPVKVNLNDSAIEIYRKLASFTINSLNSTLNTLDANDLENATNYIYVAAKQN 136 Query: 142 RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 R+ L G G S + + Q K +R+ ++ + D H+ + + + L++ D+ + T G + Sbjct: 137 RKIFLSGMGASTVLIHEFQIKMMRLNIQTIFFEDIHLRLEACANLKKNDLFICFTTLGAS 196 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLL 261 + +++A + AKII IT +S IA+ AD + + E L + ++ ILQ ++ Sbjct: 197 KENYELIDIAHERKAKIIVITQFGNSQIAEKADIALYTSIIENNLRLASQTSIILQSMVI 256 Query: 262 DAFFVSVA 269 D F+++A Sbjct: 257 DVLFLTIA 264 >UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteraceae RepID=B9NXN7_9RHOB Length = 320 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 136/279 (48%), Gaps = 13/279 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L P L Q + E ++ +++ N + I ++AE +VS+ +V+ + LG Sbjct: 32 VDLIPALHNSQTKLAVQEQKVADYVKDHLNEISSMTIGNLAERCSVSKPTVVRFCRSLGC 91 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAP--QDVVNKVFNITLRT--IMEGQSIVNVD 129 GFR+ + L + S Q L A DE+ +++V T +M GQ ++ + Sbjct: 92 EGFRDFKLRLAQNVAVSAQYLYRN-AGDESSDANSAIDQVLGALFATLDVMRGQ--IDTE 148 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICA-DVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + A RQ G GG +++ A + ++F R+G+ D++++ M A+ L Sbjct: 149 RLEEARDACLDRRQILFAGIGGGSSLVAQEASNRFFRLGIPSFFVNDSYVLQMRAAALGL 208 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICIT--HSYHSPIAKLADYIICSPAPETPL 246 DV+ +V+ SG + +A E+A GA I IT ++ S I+K+A + + PE Sbjct: 209 EDVLFLVSASGEADAIVSAAEVANGYGATTISITKPNTRLSDISKIA---LLTELPEDSD 265 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 + + ++R L ++DA ++VAQ ++ N+++ A Sbjct: 266 IYKPTASRYAHLAIVDALAMTVAQEMTDETKENLRRIRA 304 >UniRef50_Q21ZX8 Transcriptional regulator, RpiR family n=4 Tax=Comamonadaceae RepID=Q21ZX8_RHOFD Length = 310 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 114/229 (49%), Gaps = 5/229 (2%) Query: 64 IVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQ 123 +++ + LG+ G R + AL + S L + + Q+V++KV + Q Sbjct: 53 VMRTCRDLGYPGLREFKLALAQELAVSGSPLHRRVQLHDGAQEVISKVIRGAATAVSGVQ 112 Query: 124 SIVNVDEIHRAARFFYQARQRDLYGAGGSNAICA-DVQHKFLRIGVRCQAYPDAHIMMMS 182 + + V E+ AA +A + D Y G +++ A D+Q + R+G+ AY D H+ ++S Sbjct: 113 AQLGVAEVEAAADAIVRASRVDCYSVGVTSSFMASDMQARLFRLGLVSNAYLDIHLQLVS 172 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 A+ L VV ++H G + AV++A GA +I +T + +AK AD ++ P Sbjct: 173 AATLGTQGVVFAISHVGGMPSLIEAVDVAHSQGATVIALTQQ-ETELAKHADIVLGIHVP 231 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 E P++ A ++ LT+++ V VAQ ++ +++ G + + S Sbjct: 232 EDPIMHVGTEAYLVHLTVIEIVTVLVAQ---RLGDLAVKRLGGVREVLS 277 >UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=Bifidobacterium RepID=B7GUA9_BIFLI Length = 289 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 16/265 (6%) Query: 39 LKPGNLSCAPAIKDVAEALA------------VSEAMIVKVSKLLGFSGFRNLRSALEDY 86 L+P + A I+D E A VS+ +++ ++ LGF G+R LR L Sbjct: 18 LRPAERAVAQYIRDHIEEAADLTVGQMADIAHVSQPTVIRFARKLGFGGYRELRYVLRHP 77 Query: 87 FSQSEQVLPSELAFDEAPQD----VVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 ++ + FD P D + +K + I E S ++ +A ++ Sbjct: 78 AAEHKVTFNPLDGFDLNPWDGEDEIPSKAADGAKALIDELHSALDPKAYRKAVALLAESE 137 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 D++G S D+ K +G+ C+ DA++ + A L G V + +HSG ++ Sbjct: 138 FIDIFGVENSLTPAMDLFTKLGYLGLTCRLNTDAYLQQIGAGHLTHGAVAVAFSHSGSSA 197 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 D A+ LAK +GAK I IT++ +P+A AD + + + G + + L+D Sbjct: 198 DTVKALRLAKSHGAKTIAITNAIGAPLASWADVTLLTGRDSHTIYGNAIFSCVADTALVD 257 Query: 263 AFFVSVAQLNIEQANINMQKTGAIV 287 ++ V + + + + ++G ++ Sbjct: 258 MLYMGVILSDYGRFSTALDESGRMI 282 >UniRef50_D1AYR1 Transcriptional regulator, RpiR family n=2 Tax=Fusobacteriaceae RepID=D1AYR1_STRM9 Length = 281 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 28 TENESRIVEWLLKP-GNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 T +E I ++L+ N+ A K +A+ S + + + K +G GF+ + L + Sbjct: 14 TSSEKDIAKFLMNNYKNIKKIDARK-IAKETFTSVSAVTRTCKKIGLRGFQEFKIDLIEE 72 Query: 87 FSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 + EQ + S++ + + ++ K+ +++ ++ E + + + D I + + + + Sbjct: 73 LANLEQQKLEFVNSDIERNNDTRMIIEKLNKLSISSLKETKLLQDPDIIDKVVKLIKKKK 132 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 D YG G S+ +C D Q+KF+RIG C A+ + + A + ++ +++++SG T Sbjct: 133 VIDFYGIGASHIVCLDAQYKFMRIGKVCNAFGPFDLQYIQAVNSTDDNLAIIISYSGMTE 192 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS--ARILQLTL 260 D+ E+ + G + + IT + +A A++ + + E+ L R+A+ +RI L L Sbjct: 193 DIIKISEVLRNKGIETVSITMYGSNKVASNANHNLYVTSKES--LKRSAAIYSRISMLNL 250 Query: 261 LDAFFVSVAQLNIEQANINMQKT 283 +D ++ + +N ++ ++ + +T Sbjct: 251 IDVIYLKYSNMNFDEVSVKINET 273 >UniRef50_A6DTP0 Putative transcriptional regulator, rpiR family protein (Fragment) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTP0_9BACT Length = 262 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 126/253 (49%), Gaps = 17/253 (6%) Query: 35 VEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVL 94 +EW GN S I D+A VSEA + + S+ +G +L+ AL F+ ++ L Sbjct: 3 LEW---AGNAS----IHDMAAKAGVSEASVTRFSRSVGCKNVPDLKKALVSSFAIGQRFL 55 Query: 95 PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD----EIHRAARFFYQARQRDLYGAG 150 + + +V ++ I+E + VN +I + A + + ++G+G Sbjct: 56 EGHMDPITEESGAIGQV----VKGIIEALNTVNTQTSQQKIEQTASLVNELERVVVFGSG 111 Query: 151 GSNAICAD-VQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVE 209 G + + AD ++ R GV +Y D + M A+ L E +VLV++ +G+ +++ + + Sbjct: 112 GGSTVIADDAVNRMFRFGVNITSYGDFLMQRMVAATLNEDSLVLVISTTGQIAEINESAQ 171 Query: 210 LAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVA 269 +AK+ GAK++ IT SP+A+LAD + E + + ++R L ++DA + +A Sbjct: 172 IAKQYGAKVVAITRG-DSPLAQLADIHLEVHIQEDEGIYKATASRYALLAVIDAIALELA 230 Query: 270 QLNIEQANINMQK 282 L + + +++ Sbjct: 231 VLRKDSSKETLRR 243 >UniRef50_C9S176 Transcriptional regulator, RpiR family n=2 Tax=Geobacillus RepID=C9S176_GEOSY Length = 244 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 21/236 (8%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R+ + + + + +IV+++++ I+ +AEAL IV+ +K LG+ GF L Sbjct: 7 VRLYADRLNDTDDQIVDYIMEHREEIADIPIQKMAEALYTVPNTIVRFAKKLGYKGFAEL 66 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 ++AL + ++ + LA V+ K + ++E V ++H A F+ Sbjct: 67 KAAL----ALEQRAEAAALA----GGTVIEKTKELLDERLIEEA----VGKLHEAKHVFF 114 Query: 140 QARQRDLYGAGGSNAICADVQHKFLR-IGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 YG G S C ++ K LR +G R + H M+ +A E DVV V++ S Sbjct: 115 -------YGVGDSAYFC-EMMAKHLRCVGKRADFFVQRHDMLYNADRCGEKDVVFVISAS 166 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 G T V AV AK+NGA +I +TH + +A LAD+ + AP+ L + + R Sbjct: 167 GETKQVLEAVAAAKQNGAFVISLTHFCPNSLADLADFRLYCWAPKQFLNKYDVTDR 222 >UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=Lactobacillus RepID=Q1WQV4_LACS1 Length = 274 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 7/187 (3%) Query: 50 IKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQV-LPSELAFDEAPQDVV 108 I +A+ VS A I + + + S F + + L + S +V + SE + Sbjct: 37 ITKLAKKAGVSNATITRFVRRMECSDFHDFKLKLAISAASSPEVPVSSE------SDSMG 90 Query: 109 NKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGV 168 +KV+ + + ++ D IH +AR+ +YG G S + + +R+G+ Sbjct: 91 DKVYEFYQKVLQGTWKQLDTDTIHNIVHAITKARRVYVYGLGSSGYTAQEFTQRLIRMGI 150 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 D+H+M + ++++ DV++ ++ SG T DV A LAK+ G KII IT Y SP Sbjct: 151 AAFCTVDSHMMFIDSTIVNSDDVIIAISQSGNTDDVNVACSLAKQKGTKIISITGFYQSP 210 Query: 229 IAKLADY 235 + +L+ + Sbjct: 211 LIELSTW 217 >UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax=Staphylococcus RepID=A5IV96_STAA9 Length = 290 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/247 (21%), Positives = 115/247 (46%), Gaps = 1/247 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT+NE +I +++L +D+A L +S + +++ SK + GF +L+ + Y Sbjct: 15 MTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSKKITDGGFHDLKINISKY 74 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 ++ + EL +E+ + + K+ T R + + +N I + ++ + Sbjct: 75 VPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDKTIDQICHCLKRSETIFI 134 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 YG G S + D+ K RIG+ Q + HI + D V+++T++G S++++ Sbjct: 135 YGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSNDSVILITNNGTQSEMQS 194 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL-QLTLLDAFF 265 V++ II IT + +P+A+ ++ ++ + + A+ + Q+ +D + Sbjct: 195 MVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHMGATTSLFAQMFTIDILY 254 Query: 266 VSVAQLN 272 LN Sbjct: 255 YRYVALN 261 >UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_LISW6 Length = 283 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 1/237 (0%) Query: 30 NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ 89 +E +I + +L + +I +A+ S A +V+ K +G F L+ L +Q Sbjct: 20 SEKKIGQTVLANPEFTTTASIHKLAQKADASGAAVVRFCKSIGLQSFPELKRQLSLDLAQ 79 Query: 90 SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGA 149 +++ ++ +E + +K+ + ++T+ + S ++ ++ A A YG Sbjct: 80 PQKIGYYDIEPNEDFHTITDKLVSNMMQTMNDTASQLDETKVLTACDLLGDADTIYTYGV 139 Query: 150 GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVE 209 G S + D+ K+LR G A DAH++ M+ + + V + +++SG TS+V V+ Sbjct: 140 GASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKRKSVFIAISNSGETSEVLQLVD 199 Query: 210 LAKKNGAKIICITHSYHSPIAKLADYII-CSPAPETPLLGRNASARILQLTLLDAFF 265 AK N +I +T ++ + + AD + S APE + S+R QL ++D F Sbjct: 200 QAKLNDVTVISLTRFGNNKLKEKADLALETSRAPEAEIRSTATSSRQAQLLVVDILF 256 >UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=Bordetella bronchiseptica RepID=B3EUN5_BORBR Length = 303 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 2/245 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 ++ + +V +L + ++ +A+ VS IV+ + GF R+ AL Sbjct: 19 LSPAQKMVVRVILDDPQAAVLATVEQLAQKAGVSMPTIVRTCRSFGFVSVRDFMVALAQS 78 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 ++ + +L + D+ DV +KV + + ++ E ++V + + A QA + D Sbjct: 79 YAATSSLLHRSVLADDGVADVSSKVIHAAISSLSELDRDLDVVILDKVAERVAQAERIDC 138 Query: 147 YGAGGSNAICADVQH-KFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 Y G ++ A H + R+G+R + D H +MSAS L V V++H GR Sbjct: 139 YSVGAASTFIAHELHSRLFRLGLRSNTFFDMHQQLMSASTLGAKGVAFVISHVGRMPYTL 198 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 A A+++GA ++ +T +P+A AD ++ P+ PL ++ L +++ Sbjct: 199 EAARYAREHGATVVALTQPG-TPLAAAADLVLAVSGPQDPLRRVGTETQLAHLVVIEILM 257 Query: 266 VSVAQ 270 V +AQ Sbjct: 258 VRLAQ 262 >UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y2D5_LEPCP Length = 616 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 118/239 (49%), Gaps = 17/239 (7%) Query: 42 GNLSCAP------AIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLP 95 G+L AP +I +A+ VS +++ + +GF G + + L S S +V Sbjct: 357 GDLLSAPRAWMSDSIARIADRCGVSTPTVMRFCRTMGFKGLADFKLRLGAGLSGSTKVAH 416 Query: 96 SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAI 155 + + + + + N ++ ++E + ++ +A + AR+ ++YG G + Sbjct: 417 RPVRAADPTAERMATILNNSISALIELRDRLHPQAFEQAVKLLANARRIEVYGVGAAALA 476 Query: 156 CADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNG 215 + QHKF R+G++ A D+ + ++A+ L DV+LV+++SG V AV A+++G Sbjct: 477 AEEAQHKFGRLGLQVVARTDSQLQNVTAAFLGPDDVLLVLSNSGAVDPVNEAVMRARRSG 536 Query: 216 AKIICITHSYHSPIAKLADYIICSPAPE-----TPLLGRNASARILQLTLLDAFFVSVA 269 ++I + S +A+L+D I+ PE P++ +R++Q ++D +A Sbjct: 537 TRVIGMC-PQRSDLARLSDVILPVDHPEDLQALVPMV-----SRLMQTVIVDVLVTDLA 589 >UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=A0JVW9_ARTS2 Length = 309 Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/264 (23%), Positives = 134/264 (50%), Gaps = 14/264 (5%) Query: 33 RIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED--YFSQ- 89 ++ E +LK + I ++A A V E+ + + K LG G++++ L + + S+ Sbjct: 27 QVAEAVLKSPEQAQTMTISELAVAAGVGESTVSRFVKELGIDGYKSMLLGLAEATFISKA 86 Query: 90 --SEQVLPSELAFD-----EAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 S + SE+ ++ + ++ KV +++++ +V+ I RA A Sbjct: 87 ATSARTADSEVVYEGVNRGDTAAEIAGKVERSSVQSLRRTGQRQDVEAIQRAVDLI-DAS 145 Query: 143 QRDLYGAGGSNAICAD-VQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRT 201 ++ GS++I A+ +F R G +C Y D I +M A++++ GD+++ ++ SGR+ Sbjct: 146 NTVIFSCMGSSSIAAEEAVMRFTRAGKKCMLYRDTTIQVMLAAIIEPGDLLIGISDSGRS 205 Query: 202 SDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET--PLLGRNASARILQLT 259 + + A+ LA++ GA I IT + SP+ AD ++ + + L G + +++ QL Sbjct: 206 TPIIDAMHLARQRGAATIAITGAEGSPLRNYADVVLYTATVPSGGELYGESVTSKWGQLL 265 Query: 260 LLDAFFVSVAQLNIEQANINMQKT 283 ++D + + A + + ++++T Sbjct: 266 VIDILYATYASRHYDATVEHLKQT 289 >UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=Proteobacteria RepID=A9IGF4_BORPD Length = 307 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 135/291 (46%), Gaps = 13/291 (4%) Query: 8 SALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKV 67 + +P+ + +R +++ ++ E ++ + +L + + +A+ VS A I + Sbjct: 17 AGMPSPRDIVYQIRSRRDALSATERKVADAILDDIAAAAGATVDQLADKAGVSIATISRF 76 Query: 68 SKLLGFSGFRNLRSALEDYFSQSEQVL----PSELAFDEAPQDVVNKVFNITLRTIMEGQ 123 ++ +G R+L+ L + E+ L P E F + L E Sbjct: 77 ARSVGCDDTRDLKLKLAQASAVGERFLDPSTPEESTFYARLYADIEATLRAHLPRFSEAL 136 Query: 124 SIVNVDEIHRAARFFYQARQRDLYGAGGSNAICA-DVQHKFLRIGVRCQAYPDAHIMMMS 182 +AA +AR ++G GG++A+ + ++Q + +R+G AY DA ++ M Sbjct: 137 -------FEQAAGIVREARMTYVFGMGGASAVLSQELQSRLVRLGYAVAAYSDAVLLRMV 189 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 A+ L E DVV+V++ SG T ++ A + K+ GA+I+ +T SP+A LAD ++ Sbjct: 190 AATLDERDVVVVLSTSGLTPEILAGTRIVKQYGARIVTLTDP-ASPLAGLADVVLPIHTA 248 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 ET + + +S+R L +D +A E +++ +D + G Sbjct: 249 ETDFIYKPSSSRYAMLLAIDILATELALARQEATQERLRRIKLALDEYRGG 299 >UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales RepID=C5EPZ9_9FIRM Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 125/257 (48%), Gaps = 16/257 (6%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL--- 83 + ++E + ++ L +I +A A VS+ +++ K LG GF+ + + Sbjct: 16 LRKSEQKAADYYLGYDGPVETMSIAAMARAAGVSQPTVMRFVKALGLEGFKEFKYQVLKA 75 Query: 84 ----------EDYFSQSEQVL--PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 E+ +SE+VL E++ + P++V +V ++ + + ++ I Sbjct: 76 SMGGNGSGMGEEEGGRSEEVLRYGYEISARDRPEEVPGRVVAQSVSYLDDALKHISPSSI 135 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 RAA+ ARQ +Y S ++ D+ K + +G C Y D ++ +SA L DV Sbjct: 136 GRAAKLICGARQIAVYYVENSASVAGDLVTKLMYLGFNCIMYNDIYLQHISAGNLDSRDV 195 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + +++SG + + ++LAKK GA I IT+ HS IA AD ++C+ + + L G Sbjct: 196 AIGISYSGSSKNTVDVMKLAKKKGAATIAITNFEHSLIAGHADILLCTSSQQL-LYGNAI 254 Query: 252 SARILQLTLLDAFFVSV 268 +R+ Q ++D ++ + Sbjct: 255 FSRMSQTAVVDMIYMGI 271 >UniRef50_B0NFU9 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NFU9_EUBSP Length = 285 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/243 (22%), Positives = 115/243 (47%), Gaps = 6/243 (2%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E ++ +++L+ + + ++A+ VS+A +V++ +G++G+ R +L + Sbjct: 29 ERKVADFVLQNPQKAVDSNVSELAKQSGVSDATVVRMCHHIGYTGYYQFRISLARDLGK- 87 Query: 91 EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAG 150 +Q S LA +D V K+F +T++ S ++ D + ++ + G Sbjct: 88 KQYGSSALA---ESRDAVEKLFQEYAQTMLAIGSRIDADVMWNCVNLLKTCKEAHIMAVG 144 Query: 151 GSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVEL 210 + + + + R+G++ A M +L + D+++ ++ SG + V +EL Sbjct: 145 NTCPLAQYMGFRLGRLGIKSTYNVAAEYFMNHVNLADQDDLLIAISQSGTSRQVIQGLEL 204 Query: 211 AKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAF--FVSV 268 K+ G K I IT SP++ LADY++ S E P A + + ++DA FV+ Sbjct: 205 GKEKGLKSIAITAFAQSPVSNLADYVLLSAGKEEPFSFYKGYAHMNETAVIDALLNFVTN 264 Query: 269 AQL 271 +L Sbjct: 265 EEL 267 >UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=Alphaproteobacteria RepID=C6B6F5_RHILS Length = 287 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 120/245 (48%), Gaps = 19/245 (7%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED- 85 ++ +ESRI E ++ + +I ++AE VS + + + LG F + + L Sbjct: 14 LSPSESRIAEIIVNDFEFAVNASIIELAERAKVSPPTVTRFCRRLGCESFSDFKVQLART 73 Query: 86 ------YFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 Y +S+ P+++A QD++ K N + +++ I A Sbjct: 74 AHIGVRYLKPESKSTDPADVA-----QDIITKAQN----ALFLLHRSLDLAAIEAAVSHI 124 Query: 139 YQARQRDLYGAGGSNAICAD-VQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +A +G+GG++++ AD +Q++ R+G+R A D + +M A+ + GDV++ + Sbjct: 125 AKADMIYAFGSGGNSSMIADELQNRLFRLGLRITASSDHSMQLMMAAAARPGDVLIGSSF 184 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SGR ++ A ELA++ K I +T + SP+AK A+ ++ PE + R S RI Sbjct: 185 SGRNMELVRAFELARQTKVKTIALTQT-DSPVAKAAEIVVPIDLPEGHNIYRPTSTRIAY 243 Query: 258 LTLLD 262 + +D Sbjct: 244 IATID 248 >UniRef50_UPI0001BC58DB RpiR family transcriptional regulator n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC58DB Length = 283 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/279 (22%), Positives = 135/279 (48%), Gaps = 11/279 (3%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLK-PGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L + + +T+ E +I E+ +K P + A+ ++ + + VS+A I++ SK LGF Sbjct: 4 LNQFYKEHYNTLTKGEKKIAEYFVKNPKKVMMLSAL-ELGKEIGVSDASILRFSKALGFQ 62 Query: 75 GFRNLRSALEDYFSQ---SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F +L++ + FS +++++ + F + D+VNK+ N L I E ++ ++I Sbjct: 63 KFSDLKNYIASGFSTITPNDRMVKNWDNF-HSQNDIVNKIVNSDLENIKEFLLHIDFEQI 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSA-SLLQEGD 190 + +A++ G G S AI + R+G + + + + A S + + D Sbjct: 122 ETVVNWMNKAKKIYFLGIGSSRAISQFMFWHMKRLGFNTECINEGGLGLYEAFSHITKKD 181 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 +V++ + +D ++ LAK+ GAKII +T + S I+ L+D ++ + Sbjct: 182 IVMLFSFPRFLNDEVKSITLAKEQGAKIITVTSNPFSEISFLSDMVLETFVENDGFF--- 238 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 ++ ++ + L + ++ + N E ++K + DF Sbjct: 239 -NSYMVPMELCNIMLTAIFEKNKESIFTELKKNSLVKDF 276 >UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R285_BRAHW Length = 285 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/271 (23%), Positives = 128/271 (47%), Gaps = 4/271 (1%) Query: 20 LRMKQEGMTENESRIVEWLL-KPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 +R K E ++ +I ++L P + A+ D+++ VS A +V+ +K LGF G Sbjct: 7 IRDKYEDFSKAYKKISNYILSNPKEVIKLTAL-DISKNCGVSSASVVRFAKDLGFKGLDE 65 Query: 79 LRSAL--EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 L+ ++ ++ ++ + + ++ D+ +++ NK+ + + + ++ + + +A + Sbjct: 66 LKISIASKNGDDDNKYNINTIISADDNVEELCNKIMLLIKSSNEDFFYQLDKEALEKAFK 125 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 AR + G G S+ D+ HK R Y DAH+ + L E DVV+ + Sbjct: 126 LIRNARNIYMLGIGASSLSAYDLFHKLKRANFNAFFYEDAHLNAEFFNYLTEEDVVIAFS 185 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 +SGRT++V V++A A II +T + ++K+AD +I P E +++ Sbjct: 186 YSGRTNEVIYPVKIASSKKASIIAVTRKKTNNLSKMADVLITVPNNEELTRMGAITSKYS 245 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L + D + Q + E N+ T + Sbjct: 246 SLIVSDLLYFGAIQKDFENIKENLINTSILT 276 >UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG49_SEBTE Length = 283 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/273 (23%), Positives = 128/273 (46%), Gaps = 27/273 (9%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 PN IG A Y+ + + LSC ++A+ S A I+++ K Sbjct: 15 PNEIGAAKYIISHSDEVIR--------------LSCT----ELAKKTYTSPATIIRLCKK 56 Query: 71 LGFSGFRNLRSALE---DYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 +G G++ + L ++F ++ + +E+ ++ D+++K+ ++++ ++ E + + Sbjct: 57 IGIGGYQEFKVILATEINFFIKNSMEINKNNEIDKKDSISDIIDKISSLSIDSLKETKIL 116 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 + + + A DLYG+G S+ + D +KF+RIG Y + A Sbjct: 117 TDKNVVKSVIDMINNAEILDLYGSGASHFVALDANYKFMRIGKVTATYALYDQQYVQAKN 176 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 E ++ ++SG T+++ ++ +N AKII IT + + + K AD + A E Sbjct: 177 SNENHAAIIFSYSGETAEMIEIAKILTENKAKIITITKNSDNTLEKFADKSLYVTAKEN- 235 Query: 246 LLGRNAS--ARILQLTLLDAFFVSVAQLNIEQA 276 L R+A+ +RI L ++D + + L E+A Sbjct: 236 -LYRSAAIYSRISMLNVIDILYTAYFNLIYEKA 267 >UniRef50_B5RKH7 Transcriptional regulator, RpiR family n=2 Tax=Proteobacteria RepID=B5RKH7_KLEP3 Length = 294 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 24/279 (8%) Query: 23 KQEG--MTENESRIVEWL----LKPGNLSCAPA-----------------IKDVAEALAV 59 K+ G ++E E R+ +WL + G+L+ + A VA V Sbjct: 3 KENGNIISEGEQRLQQWLGSIHARSGDLAASEAKVVDLLLVDPLFVGTSTAAQVATRAGV 62 Query: 60 SEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSE-LAFDEAPQDVVNKVFNITLRT 118 S +++ ++ +GF+GF L+ + ++ P E L D V+ + Sbjct: 63 SPPTVIRAARAIGFTGFTELKIEIARARGTAQFFAPPEVLTADATLASVLETSIRAGVDA 122 Query: 119 IMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHI 178 + + + + A ARQ +GAG S + AD + GV + D Sbjct: 123 LTALSGAIEISALDEAVDLIRSARQVFAFGAGPSATVAADAVFRLRTAGVITVSIQDYLS 182 Query: 179 MMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIIC 238 M++A LL GDV++VV+ +GRTS + + A GA +I IT+ Y +P+A LA+ + Sbjct: 183 AMIAARLLGPGDVIIVVSSTGRTSSTLSIADAASSAGASLIAITNQYDTPLATLANVSLV 242 Query: 239 SPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQAN 277 P A +R+ QL ++D ++ + EQ+ Sbjct: 243 VGGMPLPAQMAAAGSRLAQLVVIDTLVAALTLRDKEQSR 281 >UniRef50_C4F999 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F999_9ACTN Length = 288 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 15/238 (6%) Query: 4 SEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKD--VAEALAVSE 61 +E SALP L ++E IV+++L N AP + +A A + SE Sbjct: 5 TELPSALP--------LITSSRQFLDSEQHIVDFIL--ANTERAPQMTSAQLARASSTSE 54 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTI 119 A + + K LGF +R+ + +L + + ++ + E+ D+ Q + N + + R I Sbjct: 55 ASVSRFCKKLGFKNYRSFQFSLARDLAAREGDERVTGEVTLDDIEQSLAN-IKHAKQREI 113 Query: 120 MEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIM 179 ++ D + R F +A G +NA+ D KF ++G+RC A Sbjct: 114 EATLDALDPDTLRRVVDLFRRAGLVMFAAVGNTNAVAIDAAIKFGQLGIRCVANTITESS 173 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII 237 A + + DV+++V++SG++ ++ + AK GA +I I + ++P+A+LAD ++ Sbjct: 174 TSLALTMGKDDVLVLVSNSGKSQRLERILRAAKHGGATVILICGNENAPLARLADIVL 231 >UniRef50_A5LQQ9 Phosphosugar-binding transcriptional regulator, RpiR family protein n=3 Tax=Streptococcus pneumoniae RepID=A5LQQ9_STRPN Length = 203 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 8/193 (4%) Query: 84 EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 +D Q + S+ DE + ++ V + R +++G+ +I A + +A Q Sbjct: 3 KDILELESQKMSSDTFIDEIKNNYLSIVE--STRKLIDGR------QIELAIKLIREANQ 54 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 + G G S + + LRIG+ + D H +M +LL++ D+++ + SG T + Sbjct: 55 ILMIGVGSSGNAAREFESSLLRIGIISKTVIDTHFQLMHTALLKDNDLIIAFSLSGSTKE 114 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 V+ + AK+ KII IT+ IAKL+D ++ + E+ L G + A+ QL ++D Sbjct: 115 VEETLLNAKRKNVKIISITNYSSRNIAKLSDCVLLTSKKESYLEGGSLMAKASQLFIIDV 174 Query: 264 FFVSVAQLNIEQA 276 ++ +N E Sbjct: 175 ICTRLSLINYEDT 187 >UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n=4 Tax=Enterobacteriaceae RepID=C2LK66_PROMI Length = 283 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/252 (21%), Positives = 117/252 (46%), Gaps = 12/252 (4%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR++ +G E R+ +LL+ + + ++A+ VS A +++ S+ +G+ G+ Sbjct: 11 LRLQGKG---TEQRLAHYLLENSDNIASMNAAELAQKAGVSSASVIRFSRQMGYGGYPEF 67 Query: 80 RSALEDYFSQSEQ------VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 + DY S+ +Q +L + LA ++ + ++ K ++ I + ++++ I Sbjct: 68 KI---DYLSEEKQQKSSSDILYANLAKTDSTEQIIAKTGHLFTTAIQDSIALLDAATIDL 124 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A++ L+G G S + +D+ HK +R+ D H + ++ L D+ + Sbjct: 125 LAEKMISAKRIVLFGVGASAIVASDIFHKLIRVNKNTLFSADLHAQLAYSANLSADDLAI 184 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 VT G T+D+ ++ AK+ G + +T +LA+Y + E + Sbjct: 185 AVTARGNTADINRMLKAAKQEGCITVALTRFGQDEATRLANYTLPYFYDEQHSQLGVITP 244 Query: 254 RILQLTLLDAFF 265 ++LQ+ D F Sbjct: 245 QVLQMVAFDVLF 256 >UniRef50_D2PSH8 Transcriptional regulator, RpiR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSH8_9ACTO Length = 309 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 22/277 (7%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G LR +Q G++ RI LL + I ++AE S + + + L + Sbjct: 5 GFLTRLRAEQPGLSGALGRIAAALLAEPGEAARLTITELAERTGTSPGTVTRFCRTLRLA 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEA----PQDVVNKVFNITL----RTIMEGQSIV 126 GF L+ AL + ++ PS + D P D +++V + + + +++ + Sbjct: 65 GFAELKVALAEEVGRAA---PSRWSTDIGRSIEPADELDQVLKVIVGANTQALLDTADQL 121 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 ++ + AAR AR L+G G S +++ + RIG C +P+ H ++S +L Sbjct: 122 DLGAVDEAARAISDARAIHLFGVGTSGITADELRIRLHRIGFACWVWPELHSALVSVALA 181 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIIC-----SPA 241 DVV+ ++HSG+ ++ A + A GA+ I IT+ S +A A ++ S Sbjct: 182 DRRDVVIGISHSGQIAETIAVLRAAAARGARTIAITNDATSALAGEAGLVLATAQNGSAL 241 Query: 242 PETPLLGRNASA------RILQLTLLDAFFVSVAQLN 272 P G +S R Q +LD + VAQLN Sbjct: 242 TTVPPGGAGSSQADALADRHSQFLVLDVLYTRVAQLN 278 >UniRef50_B0PG82 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG82_9FIRM Length = 296 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 120/237 (50%), Gaps = 13/237 (5%) Query: 34 IVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSA--LEDY--FSQ 89 +VE L + G+L+ + ++ S A I+++ K +G+ GF + R++ + +Y + Sbjct: 33 LVENLHRIGSLN----LNTISAETNSSGATIIRLCKHMGYRGFLDFRNSVRMAEYPPYDG 88 Query: 90 SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGA 149 + V P+E A + ++++ V + T+ ++++ D+ AA +A ++G Sbjct: 89 GDAV-PAEHA---SIRELMCAVIDKNNETVHNTLALIS-DQYEPAALALREANIITMFGN 143 Query: 150 GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVE 209 G + C + KF+++G C D + M AS ++ GDV L V+H+GR+ V A+ Sbjct: 144 GDAIIPCQLIGMKFMKVGKACVVLNDQDMQMFCASSIRSGDVALAVSHTGRSKSVVEAMR 203 Query: 210 LAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 +A + GA I +T S SP+ K Y + + + G S RI + T+L+ ++ Sbjct: 204 IAYERGAITIGVTASAKSPLLKHCSYALFTGTVDETDTGDIISRRIAEQTILETLYL 260 >UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=22 Tax=Enterococcus faecalis RepID=C2JLW7_ENTFA Length = 290 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/272 (22%), Positives = 126/272 (46%), Gaps = 11/272 (4%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + I L+ R++Q + ++E +I E++LK + +++A+ S A I++ Sbjct: 9 MQQNIVLSIQDRLQQ--LPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCH 66 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKV----FNITLRTIMEGQSI 125 + +GF L+ L Q +Q + +E+ E+ D+ K+ ++ R+ GQ++ Sbjct: 67 SMDVNGFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERS---GQTL 123 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 +V ++ A + +YG G S+ + D+ KF R+G D H+ Sbjct: 124 EDV-AVNEAVDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGS 182 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-CSPAPET 244 ++ V +V+++SG + +LAK+ G I+ IT S I + +D ++ S + Sbjct: 183 TEKPSVFIVISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDV 242 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQA 276 PL + + QL ++D F + A N ++ Sbjct: 243 PLRSAATVSLVAQLYVVDVLFFAYAAKNYKET 274 >UniRef50_B7IEI4 Transcriptional regulator, RpiR family n=1 Tax=Thermosipho africanus TCF52B RepID=B7IEI4_THEAB Length = 290 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 11/265 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ L+ + + E +I +++ + +I +++E V EA I ++S+ LG+ Sbjct: 17 LGIIEKLKAIYDQLKPAERKIARYIINYPDDVIHHSISELSELAKVGEATISRISRKLGY 76 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF+ L+ L S ++F+E N V + + ++ + I+N +EI++ Sbjct: 77 KGFQALKIELAKELSS--------ISFEETK---TNSVISEVIESLNKLSKIINENEINQ 125 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A+ ++ + +G G S + F R G Y D H+ ++SA+ + VV Sbjct: 126 IAKKVVESNKIFFFGVGSSGVVAEYGALLFTRGGFFANYYNDPHMQVISAAGMDNQTVVF 185 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG D ++++AK + A + IT Y S I ++ D I P S Sbjct: 186 GISSSGNIRDTVKSMKVAKDSKAFTVAITGGYESKITEVVDKTIYIPPAGLERGMPKISP 245 Query: 254 RILQLTLLDAFFVSVAQLNIEQANI 278 + Q+++L F V L E I Sbjct: 246 IVSQISILHMIFEEVLSLKKEAIEI 270 >UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU66_9CLOT Length = 285 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/246 (22%), Positives = 112/246 (45%), Gaps = 5/246 (2%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R + +T E ++ +++L+ I +++ + V + + + + + G+++ Sbjct: 10 IRSCYDRLTRLEKKVADYVLQHPQEVVKMTINELSNSCGVGDTTVFRFCRSMNVGGYQDF 69 Query: 80 RSALEDYFSQSEQVLPSELAFDEAP----QDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + AL S +L S+ F+ A ++ +V + + E S ++ D I R Sbjct: 70 KLALA-LSSNVNDMLDSKGEFNLAQSHDLHELAQQVSGVFTDAVNETLSSLDYDAISRTV 128 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 AR L+G G S +Q++ +RI D H+ + SA+ +QE V ++ Sbjct: 129 EAILNARSVHLFGFGNSGVSALMMQNRMMRILPNIFYTSDVHMQLTSAATMQEDSVAIIF 188 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +SG T D ++ + GA + IT +P A AD ++CS A E P+ G + S Sbjct: 189 CNSGITKDSIRIAQMTHEAGAFTVFITKFMQTPAAPYADVLLCSGATEGPIQGGSISGVA 248 Query: 256 LQLTLL 261 Q+ ++ Sbjct: 249 SQMYIV 254 >UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BCAC Length = 283 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/265 (21%), Positives = 131/265 (49%), Gaps = 5/265 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 LR ++ ++ E ++ E+++ + +I+ +A+ VS I+++ LG+ GF +L Sbjct: 6 LREARDSLSTKEKQVAEYIIANKKNMQSMSIQSLAQENKVSTTTILRLCHKLGYQGFSDL 65 Query: 80 RSALEDYFSQSE--QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + L + +L ++ +++ + V +KV I +I E ++VN++ A Sbjct: 66 KIDLISSINHKSYGTLLQEDIDINDSMETVNHKVGLIEKSSIEETCALVNLNAFKLANEL 125 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 ++++ +YGAG S + + +++ ++I + D I + L + D+V+V++H Sbjct: 126 ISKSKKIVIYGAGSSGLVAKEFEYQLIKIKKDVNCHLDYSIQFSIVNTLDQNDLVIVISH 185 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG + + LA++ I IT S ++ LA+ ++ + + E ++I Q Sbjct: 186 SGENHECIKLLTLARELKVPTIAITKMGQSSVSSLAETVLHTISTEHVSRLIPIRSKISQ 245 Query: 258 LTLLDAFFVSVAQLNIEQANINMQK 282 LT+++ + L I+Q + +QK Sbjct: 246 LTVINML---ITNLFIKQYDERIQK 267 >UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=Pediococcus RepID=Q03HR4_PEDPA Length = 270 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 99/188 (52%), Gaps = 12/188 (6%) Query: 50 IKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ-SEQVLPSELAFDEAP-QDV 107 I +++ VS A + + K +G+ F + L + S +E V D AP D Sbjct: 37 INTLSKKAEVSTATVTRFVKKMGYPDFSQFKLGLAEATSNITENV-------DNAPLPDQ 89 Query: 108 VNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIG 167 V +N + I +N +++ A A + ++G G S ++ + +R+G Sbjct: 90 VTDFYN---QMITGTWKRINQKTLNQVAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMG 146 Query: 168 VRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHS 227 + A D+H M +S+S++Q+ D+++V++ SG++++V AV +AK++ K++ IT S Sbjct: 147 INAFAPSDSHTMYISSSIMQKDDLLIVLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDS 206 Query: 228 PIAKLADY 235 P+A+++DY Sbjct: 207 PLAEMSDY 214 >UniRef50_C5CD76 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CD76_KOSOT Length = 278 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/272 (24%), Positives = 134/272 (49%), Gaps = 22/272 (8%) Query: 26 GMTENESRIVEWL----LKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRS 81 +T +E ++ ++ LK N+S I+ +A V + ++K +K LGFSGF L+ Sbjct: 15 ALTSSEEKVARYIKENPLKVVNMS----IQSLANECFVVPSTVIKTAKKLGFSGFSELKI 70 Query: 82 ALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME--GQSIVNVDE--IHRAARF 137 AL ++ A D+++ F + E Q+ V + E ++ AAR Sbjct: 71 ALAAELDKA--------AITGLDSDILSNTFKRYAEFVQELIEQASVRLSEELLNEAARI 122 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +A + D+Y G + D+ K ++IG Y + ++ M+SA+ L D V+ ++ Sbjct: 123 VLEANKIDIYSFGFDSIAGLDLYLKLVQIGKTTAHYENGYMQMISATYLGTEDAVIAISS 182 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 +G + D+ AV+ A ++GAK+I I S S +A L + + L + R++Q Sbjct: 183 TGSSKDLFDAVKRAIESGAKVIVIAPS-SSMLAGLETVYLDTYFSTLVLPEGGIATRLVQ 241 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 L L+D ++ + +++ E+++ +K ++++ Sbjct: 242 LFLIDQLYLRILKMD-EKSSERYEKFQNVLEY 272 >UniRef50_C0XD02 RpiR family transcriptional regulator n=1 Tax=Lactobacillus gasseri JV-V03 RepID=C0XD02_9LACO Length = 294 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/261 (19%), Positives = 124/261 (47%), Gaps = 10/261 (3%) Query: 23 KQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSA 82 +++ M+ NE + +LLK ++ VAE S + I+++ LGF+GF + ++ Sbjct: 9 EKKNMSNNEKIVANYLLKADENIEKDTVRTVAEKTYTSPSTIIRLCHKLGFTGFSDFKNK 68 Query: 83 LED---YFSQSEQVLPSELAF--DEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + YF+ Q + F ++ ++V++K+ ++ + TI + + +V++ + R + Sbjct: 69 FLNEVKYFNLQFQNVDVNFPFRREDTAREVMSKITDLYIETIKDTEKVVDMRTLLRCRKI 128 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 ++ + ++ G + K ++IG + + + + A ++Q GD+ +++++ Sbjct: 129 CSESEEIHIFSYGTYLNQAYSFKEKMMKIGKKVMISSNLNYQLYEAEIMQAGDIAIIISY 188 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T++ + +KN I IT + + K+ D + E+ L +N + Sbjct: 189 SGETNNSLLIAKQCRKNNIPTIAITSIGENDLTKICDETLYISTKES--LYKNIGDYSIH 246 Query: 258 LT---LLDAFFVSVAQLNIEQ 275 L+ +LD + + Q + E Sbjct: 247 LSVSYVLDVLYSLIFQNDFEH 267 >UniRef50_C8N6B7 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N6B7_9GAMM Length = 273 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 17/207 (8%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 PY+ + + E +I ++ L G K +A+ L VSEA + + S+ GF G R Sbjct: 10 PYIEAHLQEFSPVERKIADYFLGGGETPPEETGKALAKRLGVSEAALTRFSQKCGFRGLR 69 Query: 78 NLRSALE--DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 L A + S+ V P ++ Q+++NK + +I+++ +I R Sbjct: 70 ELFYAHNQTENHGGSDFVQPVLASY----QELLNKTY-----------AIIDMRQIRRIT 114 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 ++ +YG G S + +++ +F+RIG+ C+A D ++ M+A L + + + Sbjct: 115 ALLLHKKRVYIYGKGSSGMVAQEMKFRFMRIGLICEAITDDDMIRMTAVLTDPECLAIGI 174 Query: 196 THSGRTSDVKAAVELAKKNGAKIICIT 222 + SGR+ + A++ AK GA + +T Sbjct: 175 SISGRSKIIIEALQTAKSQGAATVLLT 201 >UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FU45_9FIRM Length = 277 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 8/186 (4%) Query: 49 AIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVV 108 I ++A+ VS A I + + +G F +L+ L Q E A + D+ Sbjct: 36 TISEMAKETGVSAATITRFCRKVGCESFVDLKIQL--------QASEGESASNHQNHDMF 87 Query: 109 NKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGV 168 + V R I + + ++ + + QA + +YG G S ++ + R+G+ Sbjct: 88 DTVSEFYNRIIQRTSELQSEYQLRQLIQVLSQANRIMVYGMGSSGLTARELAIRLSRMGL 147 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 + D+H+M++S+++ + DVV+ +++SG T DV A+ AK+NGA ++ IT S Sbjct: 148 PATSETDSHMMIISSTVTRSSDVVIAISNSGETKDVIDALGNAKQNGAILVAITSMKGSS 207 Query: 229 IAKLAD 234 +AKLAD Sbjct: 208 LAKLAD 213 >UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5E8_9LACT Length = 268 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/228 (20%), Positives = 107/228 (46%), Gaps = 11/228 (4%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + N + L+ + +++ E ++ ++L+ + IKD++ S A I + Sbjct: 1 MTNNLDLSNRINQNYSLLSKKEKQVAAFILEHKKDIESWNIKDLSRLTETSNATISRFCA 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 L + F ++ + EL+ + P V K+ + + I ++ Sbjct: 61 KLSYRNFNEFKT-----------FVTQELSGNPTPLQVPVKIASYYTQLIHSASQLIETK 109 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 +I+ + + + + G G S +++++ +R+G+ D H+M+M A LL++ Sbjct: 110 QINDFVEAIHLSNKILICGVGNSGLSAMELKYRLVRMGLIVDVVTDPHMMLMDAVLLKKY 169 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII 237 D+++ +++ G+T V A +AKK A + IT+ H+P+ K+AD ++ Sbjct: 170 DLMIAISNYGQTQAVIDACTIAKKEDATVFVITNQNHTPLTKIADQVL 217 >UniRef50_B0NJ36 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NJ36_EUBSP Length = 277 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 4/214 (1%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E ++ + +L+ N +K++A A VSEA +V++ + G++G+ R+ L ++ Sbjct: 21 ERKVADCVLRHPNQVTEYTVKELAMASGVSEATVVRMCQHAGYTGYWPFRTML----ARD 76 Query: 91 EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAG 150 ++ E D ++V +F + S +++D + AR + + AG Sbjct: 77 MGMMGREEKRDNDQANIVAGIFRKYADIMQNLSSKIDLDAMSTCARLIDNCHEVHVIAAG 136 Query: 151 GSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVEL 210 + + + RIG++ A + + +L E DV++ ++ SG T V EL Sbjct: 137 DTGTLAKHMGFCLGRIGIKATYSGLADYYLNTINLADENDVLIAISKSGITKTVIQGAEL 196 Query: 211 AKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 AK+ G K+I IT +S + +LAD+++ S + Sbjct: 197 AKEKGLKVIAITEYGNSKLGELADHVLLSKGDSS 230 >UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=1 Tax=Listeria grayi DSM 20601 RepID=C2C2H3_LISGR Length = 282 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/272 (23%), Positives = 118/272 (43%), Gaps = 16/272 (5%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF----RNLRSA 82 + ++E ++ E +L+ + A +I +A+ S A IV+ K LG F R L S Sbjct: 17 LPKSEKKVAEMVLQDPAFASASSIHSLAKRADTSAAAIVRFCKSLGLKSFPDFKRQLYSE 76 Query: 83 LEDYFSQSEQVLPSELAFDEAPQDVVNKVF---NITLRTIMEGQSIVNVDEIHRAARFFY 139 L + + +FD Q ++ F N T I E + +++ +A + Sbjct: 77 LSSPVASGYYDFEEDESFDGISQKLLANYFQTLNDTAGQISEAKIRTVSEQLEKADTIY- 135 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 YG G S + D+ K+LR G + D H++ M+ + + G V V++SG Sbjct: 136 ------TYGVGASWLVAQDIAQKWLRAGKQVVISQDEHVLAMAFAARKSG-VFFAVSNSG 188 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-CSPAPETPLLGRNASARILQL 258 T+ V E AK+N +I +T S + AD+++ S APE S++ Q Sbjct: 189 ETTSVIELAEQAKQNNLTVIGLTRFGPSKLKAKADFLLETSRAPEAKFRSTATSSKQAQF 248 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++D + + +Q ++++ D F Sbjct: 249 FIIDVLYYHYVSRHYDQMIEQIRESRQATDRF 280 >UniRef50_C5BWC4 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BWC4_BEUC1 Length = 335 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 5/194 (2%) Query: 49 AIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL-EDYFSQSEQVLPSELAFDEAPQDV 107 +I +A A VS A + +++ LLG+ GF +R+A+ ++ + + ++ AP D Sbjct: 72 SITRLATASGVSPATLTRLAGLLGYDGFPAMRAAIATEHGREVQGGWQRDIGTAIAPDDP 131 Query: 108 VNKVFNITL----RTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKF 163 ++V + + R +++ RAA + A + LYG G + ++ + Sbjct: 132 ADQVLGVLVAHSSRAARNAMGALDLAGATRAADWIAAAERIHLYGEWGDSVSLHELYLRL 191 Query: 164 LRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITH 223 LRIG + ++ASLL+ GDV + ++ +G + +A LA++NGA + IT Sbjct: 192 LRIGRPVWFHEGKQATRVAASLLRPGDVAIALSRAGHDAVGEAFCALAQENGAHTVVITG 251 Query: 224 SYHSPIAKLADYII 237 P+A +AD ++ Sbjct: 252 DPEGPLADVADLVL 265 >UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NYS8_9CLOT Length = 282 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/243 (21%), Positives = 113/243 (46%), Gaps = 2/243 (0%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 + + + E ++ ++L+ + + ++ ++A S+A I++ K +G GF L+ L Sbjct: 16 DSLYDAEKKVADYLISHPSEAIEMSVSELASHCDASQATIIRFCKKIGCKGFHQLKIKLA 75 Query: 85 -DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 + Q EQV+ +E+ D+ + + N + + I N +E+ A Sbjct: 76 GEQRQQEEQVISNEIDIDQMDKSL-NNIMISKVEEIKATFHNFNPEELREIVDLIIHANL 134 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 + G + I D +KF ++G++ + + L++GDV ++ SG + Sbjct: 135 IEFAAMGDTIPIALDGSYKFNQLGLKAVSSTIWESQEAFSRTLRKGDVFFAISASGASKR 194 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 + VE+ K NG I IT+ SP+A+L D+++ + E + + R+ ++++D Sbjct: 195 LVKMVEIVKDNGVTTIAITNQSKSPLAELCDHVLLTATREHIFHDQVSFTRMAAMSVIDT 254 Query: 264 FFV 266 F+ Sbjct: 255 LFL 257 >UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XVK6_9LACO Length = 280 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 108/215 (50%), Gaps = 12/215 (5%) Query: 31 ESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQS 90 E ++ L+ L I ++A V A + + +K +G F + + AL Sbjct: 15 EKKVARVTLQKPELVRRMNITELANQAGVGVATVSRFTKRVGCKNFADFKLAL------- 67 Query: 91 EQVLPSELAFDEAPQDVV--NKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYG 148 V P + E+ Q+V N + N + + E ++V+ ++ +AA + A++ ++G Sbjct: 68 --VTPDTMQ-RESEQNVSTPNDIHNYYQKILAETMAMVSTKQLRQAANLIHGAKRVYVFG 124 Query: 149 AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAV 208 G S + + +R+G A ++++M ++++ +Q+ D+V+ ++ SG T +V +AV Sbjct: 125 IGSSGYNAQEFAQRLMRMGKPAFAMTESNMMTIASATMQDNDIVIALSVSGSTPEVCSAV 184 Query: 209 ELAKKNGAKIICITHSYHSPIAKLADYIICSPAPE 243 ++KNGA II +T +S + K++D + + E Sbjct: 185 RDSRKNGATIIAVTAFKNSLLGKMSDLLFQIKSTE 219 >UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus RepID=C2HLD1_LACAC Length = 284 Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/250 (22%), Positives = 121/250 (48%), Gaps = 3/250 (1%) Query: 20 LRMKQEGMTENESRIVEWLL-KPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 ++ K+ + + E + ++++ P N+ + +I+ +++ +S A IV+ + +G +GF + Sbjct: 8 IKGKKSQLPKKEQLLGDYIIANPENV-ISSSIQKLSKDTGISTATIVRFCREIGTNGFSD 66 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 L+ L S E E + N + I QS +N + + +A R Sbjct: 67 LKLQLVAAQSSVNNNDYHEFDAGEGIAAIKNTMAARFESAIEATQSGLNDNSVEKAVRKI 126 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 Y + +YGAG S + +D+ KF+R+G D H+ + + D+++++++ Sbjct: 127 YNSSSILVYGAGASGIVASDMYQKFMRVGKNINYISDLHVALAQLASFTSDDLLILISND 186 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL-Q 257 G+T++V ++A K G + +T + S +AK AD ++ + P + A+ ++ Q Sbjct: 187 GKTTEVSDIQKVADKFGIPTLLLTANPRSFVAKKADLVLLTQDIGEPSIRSGATTSLISQ 246 Query: 258 LTLLDAFFVS 267 + ++D S Sbjct: 247 MFVVDVLVFS 256 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax... 374 e-102 UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes Rep... 304 2e-81 UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales Re... 304 2e-81 UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=T... 298 2e-79 UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=A... 295 1e-78 UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=... 294 2e-78 UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Ac... 294 3e-78 UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=D... 293 5e-78 UniRef50_D2AR91 Putative transcriptional regulator, RpiR family ... 293 6e-78 UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulat... 292 7e-78 UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=A... 292 8e-78 UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=T... 286 8e-76 UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n... 285 9e-76 UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia... 285 1e-75 UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteri... 285 1e-75 UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus ... 284 3e-75 UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=H... 284 3e-75 UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=P... 283 4e-75 UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=P... 282 1e-74 UniRef50_B9K581 Transcriptional repressor of rpiB expression; tr... 282 1e-74 UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=B... 282 1e-74 UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax... 281 2e-74 UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=... 280 5e-74 UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Ba... 278 2e-73 UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=B... 278 2e-73 UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Se... 277 3e-73 UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopo... 277 4e-73 UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=C... 276 6e-73 UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostri... 275 1e-72 UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttle... 275 1e-72 UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus ... 274 2e-72 UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putativ... 273 5e-72 UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus ... 273 6e-72 UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=C... 273 7e-72 UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATC... 272 7e-72 UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=P... 272 1e-71 UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulat... 271 2e-71 UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=A... 271 2e-71 UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=B... 270 4e-71 UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=... 270 4e-71 UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=E... 269 6e-71 UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostri... 268 1e-70 UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=K... 268 1e-70 UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Sta... 268 2e-70 UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. ... 268 2e-70 UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=B... 267 2e-70 UniRef50_P44540 Uncharacterized HTH-type transcriptional regulat... 267 4e-70 UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostri... 267 5e-70 UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostri... 266 7e-70 UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=G... 266 8e-70 UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulat... 264 2e-69 UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio ... 264 3e-69 UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostri... 263 5e-69 UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=S... 263 7e-69 UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Cl... 262 1e-68 UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=T... 262 1e-68 UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Er... 262 1e-68 UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=P... 262 1e-68 UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus si... 262 2e-68 UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=F... 262 2e-68 UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=... 261 2e-68 UniRef50_Q184N2 Putative phosphosugar-binding transcriptional re... 260 3e-68 UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=B... 260 4e-68 UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator... 260 5e-68 UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=A... 260 5e-68 UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oen... 259 8e-68 UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=C... 259 1e-67 UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator ... 258 1e-67 UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=G... 258 1e-67 UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseria... 258 1e-67 UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=... 258 2e-67 UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium ... 258 2e-67 UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteri... 258 2e-67 UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n... 258 2e-67 UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=S... 257 4e-67 UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=C... 256 5e-67 UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=B... 256 5e-67 UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp... 256 6e-67 UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonel... 256 6e-67 UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus ... 256 6e-67 UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=G... 256 7e-67 UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Ga... 256 7e-67 UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=F... 256 8e-67 UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=L... 256 8e-67 UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 T... 255 1e-66 UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n... 255 1e-66 UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collins... 254 3e-66 UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=... 254 3e-66 UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus la... 253 4e-66 UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR... 253 4e-66 UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Ta... 252 1e-65 UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=... 252 1e-65 UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=B... 251 1e-65 UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=B... 251 1e-65 UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostri... 251 2e-65 UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=B... 251 2e-65 UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteoba... 251 2e-65 UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collins... 251 2e-65 UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_... 251 2e-65 UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales ... 250 4e-65 UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=P... 250 5e-65 UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Provide... 250 6e-65 UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n... 249 8e-65 UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax... 249 1e-64 UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=At... 249 1e-64 UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n... 248 1e-64 UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=B... 248 1e-64 UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulat... 248 2e-64 UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor... 247 3e-64 UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=A... 247 3e-64 UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=At... 247 3e-64 UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, ... 246 5e-64 UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment)... 246 6e-64 UniRef50_P26833 Uncharacterized HTH-type transcriptional regulat... 246 6e-64 UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=K... 246 7e-64 UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecali... 246 7e-64 UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rh... 246 8e-64 UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU 245 2e-63 UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=P... 245 2e-63 UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=... 244 2e-63 UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=S... 244 3e-63 UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=O... 244 3e-63 UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulat... 243 4e-63 UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteur... 243 5e-63 UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=B... 241 2e-62 UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax... 241 2e-62 UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostri... 240 3e-62 UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulat... 240 4e-62 UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium bu... 240 4e-62 UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=A... 240 4e-62 UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp... 240 4e-62 UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus ... 240 6e-62 UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=... 239 7e-62 UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillac... 239 1e-61 UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=F... 239 1e-61 UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, ... 238 1e-61 UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU 238 1e-61 UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales ... 238 2e-61 UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=St... 238 2e-61 UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocace... 238 2e-61 UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteri... 238 2e-61 UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteracea... 238 2e-61 UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=... 237 3e-61 UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n... 237 4e-61 UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=A... 236 5e-61 UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=K... 236 6e-61 UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejue... 236 8e-61 UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=L... 235 1e-60 UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=B... 235 1e-60 UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family pr... 235 1e-60 UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=B... 234 2e-60 UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=L... 234 3e-60 UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID... 234 3e-60 UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=P... 234 3e-60 UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=A... 234 3e-60 UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=M... 234 3e-60 UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=La... 234 3e-60 UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enteroco... 234 4e-60 UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hy... 233 4e-60 UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=A... 233 4e-60 UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostri... 233 5e-60 UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus ... 233 7e-60 UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacte... 233 7e-60 UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteoba... 233 8e-60 UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostri... 233 8e-60 UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Ba... 231 2e-59 UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family... 231 2e-59 UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n... 231 2e-59 UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enteroba... 231 3e-59 UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=R... 231 3e-59 UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostri... 231 3e-59 UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulat... 230 4e-59 UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus ... 230 5e-59 UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=E... 230 5e-59 UniRef50_P37767 Uncharacterized HTH-type transcriptional regulat... 230 5e-59 UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n... 230 6e-59 UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=S... 230 7e-59 UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus ... 229 9e-59 UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmone... 229 1e-58 UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus pl... 229 1e-58 UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=D... 228 1e-58 UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=P... 228 2e-58 UniRef50_P46117 Uncharacterized HTH-type transcriptional regulat... 228 2e-58 UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n... 227 3e-58 UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus ... 227 4e-58 UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillale... 227 4e-58 UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales ... 227 4e-58 UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=M... 226 5e-58 UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escheri... 226 8e-58 UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus... 226 9e-58 UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=S... 225 1e-57 UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostri... 225 2e-57 UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=F... 225 2e-57 UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1... 225 2e-57 UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=C... 224 2e-57 UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=R... 224 3e-57 UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional... 224 4e-57 UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=A... 224 4e-57 UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=... 223 5e-57 UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=L... 223 7e-57 UniRef50_B9Y4T6 Putative uncharacterized protein n=2 Tax=Holdema... 222 1e-56 UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=E... 221 2e-56 UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax... 221 2e-56 UniRef50_C8QBF9 Transcriptional regulator, RpiR family n=1 Tax=P... 221 3e-56 UniRef50_D1AYR1 Transcriptional regulator, RpiR family n=2 Tax=F... 220 5e-56 UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=P... 220 5e-56 UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnoba... 220 6e-56 UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=P... 220 6e-56 UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=S... 220 7e-56 UniRef50_C8P0W4 RpiR family phosphosugar-binding transcriptional... 219 1e-55 UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostri... 219 1e-55 UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 Re... 218 1e-55 UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=... 218 1e-55 UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdema... 218 2e-55 UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=S... 218 2e-55 UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=P... 218 2e-55 UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacte... 218 3e-55 UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax... 218 3e-55 UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=F... 217 3e-55 UniRef50_C0Q155 Protein rpiR n=2 Tax=Salmonella enterica RepID=C... 217 3e-55 UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=R... 217 3e-55 UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=La... 217 4e-55 UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, ... 217 4e-55 UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family ... 217 4e-55 UniRef50_C2L0R5 Possible transcriptional regulator RpiR n=1 Tax=... 216 6e-55 UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acid... 216 8e-55 UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus pl... 216 8e-55 UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, ... 215 1e-54 UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family ... 215 1e-54 UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=E... 215 1e-54 UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID... 215 2e-54 UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=R... 215 2e-54 UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=R... 215 2e-54 UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium ... 215 2e-54 UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator... 214 3e-54 UniRef50_C9XPJ9 RpiR-family transcriptional regulator n=5 Tax=Cl... 214 3e-54 UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonel... 214 3e-54 UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacte... 214 3e-54 UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus ... 214 4e-54 UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillu... 213 4e-54 UniRef50_B1QVU2 Transcriptional regulator, RpiR family n=9 Tax=C... 213 5e-54 UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macroco... 213 5e-54 UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=A... 213 5e-54 UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=D... 213 8e-54 UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n... 213 9e-54 UniRef50_C6JFN2 Transcriptional regulator n=3 Tax=Clostridiales ... 212 1e-53 UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1... 212 1e-53 UniRef50_C3RM35 Transcriptional regulator n=2 Tax=Bacteria RepID... 211 2e-53 UniRef50_UPI0001BC57B3 oxygen-independent coproporphyrinogen III... 211 2e-53 UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=B... 210 4e-53 Sequences not found previously or not previously below threshold: >UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax=Gammaproteobacteria RepID=RPIR_ECOL6 Length = 296 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS Sbjct: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM Sbjct: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM Sbjct: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP Sbjct: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK Sbjct: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 >UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes RepID=Q8R7I8_THETN Length = 285 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 137/277 (49%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 N + ++ +T E ++ +++L+ +I ++AE E IV+ + Sbjct: 4 QNNGNVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRR 63 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 +G SGF+ + L ++ E + ++F++ +V K+ I ++++ E Sbjct: 64 IGLSGFQEFKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSE 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + +A AR+ YG G S D ++KF+R+G+ A DAHI +SA L + D Sbjct: 124 LEKAVDAIINARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLTDKD 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V + ++ SG T D LAK+ GA++I IT+ SPI +AD ++ + A ETPL Sbjct: 184 VAVGISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRSGA 243 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +++I QL +LD + +VA ++A + KT V Sbjct: 244 LTSKIAQLHILDILYTAVAVKLKDKAVQELNKTAKAV 280 >UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales RepID=C0ZD50_BREBN Length = 288 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 153/287 (53%), Gaps = 1/287 (0%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 +++ P+ + LR ++ E +I +++L+ + +I ++A+ ++A + Sbjct: 1 MNASTPHAPRVLTQLRAIYTQLSGKEQQIADYILEHASEIIHFSITELADQCQCADATVF 60 Query: 66 KVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAP-QDVVNKVFNITLRTIMEGQS 124 ++ + LGF G++ + AL + +Q + E+ D+ + K+F + TI + Q Sbjct: 61 RLCRRLGFRGYQAFKIALASEVTNPKQTIHQEINLDDDDVSAIAEKIFTANIETIRDTQQ 120 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 I+N DE+ + A + + YG+GGS I D HKF+R G+ C + DAH +MSAS Sbjct: 121 IINKDELMKIVSCLENASRIEFYGSGGSAVIAQDAYHKFMRTGIPCLYHSDAHYQVMSAS 180 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 LL +G VV+ ++HSG D+ AA+++AK+ GAK I IT SP+ +LAD + + + ET Sbjct: 181 LLTKGAVVVGISHSGSNKDILAALQVAKEAGAKTIGITSYGKSPLVRLADMCLYTTSRET 240 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 S+R+ QL+L+D +V+V+ E N+Q + Sbjct: 241 VFRTEALSSRLAQLSLIDLLYVAVSLRRQEDTIANIQHIREAISLKR 287 >UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSQ6_9FIRM Length = 287 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 151/277 (54%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G P +R + +T+ E ++ +++L+ +I ++AE +EA I ++ + +G+ Sbjct: 10 GCLPRIRSIYKALTKAEQKVADYILENAAKVVHLSITELAEVSGSAEATIFRLCQKVGYR 69 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+++ + AL +++ ++ ++ + KVF+ + + I++ + +A Sbjct: 70 GYQHFKIALAGDLYTPAELVYKDVNAGDSMGVIARKVFHDINEGLQDTLKIIDEAALDKA 129 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +AR+ D YG+ GS I AD++++F+R G+ +AY D H+ ++SA+L+Q GD+ + Sbjct: 130 VAAITKARRIDAYGSAGSAVIAADIEYRFMRFGIPVRAYADPHMQIISAALMQPGDLAIA 189 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V+H+G D+ +V +AK+NGA +I IT SP++KLAD +C A ET +AR Sbjct: 190 VSHTGANRDLLDSVAMAKQNGATVIAITSYMKSPLSKLADITLCGSAKETEYRSEAMAAR 249 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++ L ++DA +V V + NM+K + Sbjct: 250 LVHLAIVDALYVGVMLDRQDCIVENMEKIRKAIAIRR 286 >UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=Actinomycetales RepID=C7MQM6_SACVD Length = 333 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 157/295 (53%), Gaps = 6/295 (2%) Query: 5 EFDSALPNGIGLAP--YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 DS+ P G +P +R G+ E R+ + +L+ + +I +VA A SE Sbjct: 26 PVDSSKPAGSEASPLVRIRSLLPGLARAEQRVAKVVLEDPSSVARRSITEVAMAAKTSET 85 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSE----QVLPSELAFDEAPQDVVNKVFNITLRT 118 + + K +G G+ LR AL +++E + L ++ D+ VV+KV R Sbjct: 86 TVTRFCKAIGVGGYPQLRIALAADTARTEAKSSRDLGGDITADDDLASVVSKVSFADARA 145 Query: 119 IMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHI 178 + E +++ E+ R +A + D+YG G S + AD+Q K RIG A+ D HI Sbjct: 146 VEETAEQLDIAELTRVTELLAEATRVDVYGVGASAFVAADLQQKLHRIGRVSFAWSDTHI 205 Query: 179 MMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIIC 238 M+ SA++L EGDV + ++HSG T+D A+ +AK++GA + IT+ SPIA +AD+++ Sbjct: 206 MLTSAAVLSEGDVAVAISHSGATTDTVEALRVAKEHGATTVAITNFPRSPIASVADHVLT 265 Query: 239 SPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + A ET ++RI QLT++D F+ VAQ ++++ ++ T V+ G Sbjct: 266 TAARETTFRSGATASRIAQLTVIDCLFIGVAQRRMDESMAALEATREAVNGHRLG 320 >UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788119 Length = 278 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 134/272 (49%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 LR + + +E ++ ++L+ ++ D+A S+A IV++ K +GF G+++ Sbjct: 7 RLREVYDSLNPSERKVAAFILQEPAEMIQMSVADLAVRSGSSQAAIVRLCKTMGFKGYQD 66 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 L+ + + ++ +++ ++ V N +++I + I+ + A Sbjct: 67 LKLKVAGDLQEPLATGYQDIRPNDSISAIIQNVSNNNIQSIRDTMKIMEEGMVEEAVLAL 126 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 Q+++ ++G G SN I D Q KFLRI C ++PD H+ + SA LL D + +++S Sbjct: 127 DQSKRIFMFGVGASNLIGMDAQQKFLRINKVCISFPDPHVQLTSAVLLTPDDAAVCISYS 186 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G T +V A +AK+ G K I IT S +++ D + + + E + S+RI QL Sbjct: 187 GETDEVIRAAAIAKEKGCKTIGITKYGDSTLSRSVDIPLYTSSTENEIRSGAMSSRITQL 246 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 L+D ++ VA N E + + ++ + Sbjct: 247 NLIDILYLGVASRNYENSVKYLDESRRAIKRL 278 >UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Actinomycetales RepID=A4F6M8_SACEN Length = 308 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 152/293 (51%), Gaps = 5/293 (1%) Query: 7 DSALPNGIGLAPYLRMK--QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 D LP +P +R++ G+ E R+ +L +I +VAEA SE + Sbjct: 4 DDTLPESGEASPLIRIRSLLPGLARAEQRVANIVLADPASVARRSITEVAEAAGTSETTV 63 Query: 65 VKVSKLLGFSGFRNLRSALEDYFSQS---EQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 + K +G G+ +LR AL +++ ++ L S++ ++ + ++ KV + + E Sbjct: 64 TRFCKAIGVGGYPDLRIALAADTARTSSRDRDLGSDIGPEDDVRKIIEKVSYADAKAVEE 123 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 ++ + + +AR+ D+YG G S + D+Q K RIG+ C A+ D H + Sbjct: 124 TADQLDAETLRSLVDAVARARRIDVYGVGASAFVALDLQQKLHRIGLTCFAWSDTHNALT 183 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 SA++L+EGDV + ++H+G T++ A++ A K GA +T+ SPI ++AD+++ + Sbjct: 184 SAAVLREGDVAIGISHTGATTETVEALQEAGKRGATTAALTNFARSPITEVADHVLTTAV 243 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 ET ++RI QLT++D F+ VAQ +++Q ++ T V GA Sbjct: 244 RETTYRSGAMASRIGQLTVIDCLFIGVAQRHLDQTKAALEATYEAVGAHRLGA 296 >UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=Dictyoglomus RepID=B8E0M8_DICTD Length = 281 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 151/273 (55%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ ++E ++E ++ ++L I ++AE + VSEA IV++ K LG Sbjct: 4 SILEKIKEQKESFRDSEEKVANYILARWQEVLHLPITELAERIGVSEATIVRMCKKLGLR 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF+ L+ AL Q + + + + + ++ KVF+ +R + ++++V EI RA Sbjct: 64 GFQELKIALATEKIQPIKTVHQAVQEGDDLETILKKVFSANIRAMESTLNVISVKEIERA 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 ARQ +YG GGS + D QHKF++ G+ AY D+H+M MSAS+L+ DVV+ Sbjct: 124 IDAILNARQLQIYGVGGSGPVALDAQHKFMKTGIPTVAYIDSHMMAMSASILEPQDVVIG 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG + D+ A+ELAK GA I ITH +P+ ++ D + + ET + SAR Sbjct: 184 ISASGSSKDIFEALELAKNRGATTIGITHYAKTPLDRVLDIKLSVSSEETFYRTESTSAR 243 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 I QL+++D ++ VA +++ N++ T + Sbjct: 244 IAQLSIIDTLYIGVALKRLDKMIENLKLTREAI 276 >UniRef50_D2AR91 Putative transcriptional regulator, RpiR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AR91_STRRD Length = 299 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 2/286 (0%) Query: 7 DSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVK 66 D P + L +R +T I +L + I + + SEA IV+ Sbjct: 3 DQDGPTPVNLVATVRAVLPSLTPAAQAIARLILDDPGMVARSTITEFSAVSGTSEATIVR 62 Query: 67 VSKLLGFSGFRNLRSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 ++ LGF+G+ LR AL + + E+++P +L D+ DV+ KV + + + Sbjct: 63 TARALGFAGYSQLRFALAAAVAREEPERLVPGDLGPDDPLTDVIAKVTRAESEALADTAA 122 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 +N D + AR+ D+YG G S + AD+ K +RIG A+ DAH+ + SA+ Sbjct: 123 QLNPDRLGAVVEAMTAARRVDVYGVGASGLVAADMAQKLMRIGRSSHAFTDAHLALTSAA 182 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 LL EGDV + V+ +G T DV A + +A+K GA + IT++ S +A+LA++++ S ET Sbjct: 183 LLGEGDVTVGVSCTGETPDVIAPMRVARKAGATTVAITNNPRSSLAELAEHVLVSAGRET 242 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++RI QL ++D FV +AQ E ++ ++ T +D F Sbjct: 243 AFRPGALASRISQLLIVDCIFVGIAQRTFETSDAALRATRGALDEF 288 >UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulator TTE0211 n=3 Tax=Clostridia RepID=Y211_THETN Length = 282 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 137/278 (49%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R T +E++I +++L+ + ++ ++A A SEA I++ + +G Sbjct: 2 TDVLAVIREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGL 61 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF+ L+ + ++ + L + ++ V+ K+ N + I +++N +E+ + Sbjct: 62 KGFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTK 121 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AA A + D YG S + D KF RI + C AY D H+ + SA L++GDV Sbjct: 122 AAEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAF 181 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T ++ A++ AK+ GA I +T SP+AK AD + + E ++ Sbjct: 182 GISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMFRAGAMAS 241 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 RI QLT++D F+ VAQ ++ T ++ Sbjct: 242 RIAQLTVIDILFILVAQKKYNDVVRYLENTSEVLSMRK 279 >UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C6WFA6_ACTMD Length = 304 Score = 292 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 142/280 (50%), Gaps = 4/280 (1%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 +R G+ E R+ + +L +I +VAE+ SE + + K +G G+ Sbjct: 13 KIRSLLPGLARAEQRVAKVVLDNPATVAHRSITEVAESAGTSETTVTRFCKAIGVGGYPE 72 Query: 79 LRSALEDYFSQSEQV----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 LR AL +++ L ++ + + VV KV R + E +NVD + Sbjct: 73 LRIALAADTARTAARTDRDLGGDIGPGDDLRQVVGKVAFADARAVEETAEQLNVDTLQAV 132 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +A + D+YG G S + D+Q K RIG C A+ D HI + SA++L DV + Sbjct: 133 VDAVARAGRVDVYGFGASAFVAFDLQQKLHRIGRTCFAWNDTHIALTSAAVLTGADVAVG 192 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++H+G T++ A+ +A++ GA + +T+ SPI+++AD+++ + A ET ++R Sbjct: 193 ISHTGSTTETVEALRVARERGATTVALTNFPRSPISEVADHVLTTAARETTFRSGAMASR 252 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 I QLT++D F+ VAQ ++E A ++ T V GA Sbjct: 253 IAQLTVVDCLFIGVAQHHVESATSALEATYDAVAGHRLGA 292 >UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q8T9_9THEO Length = 282 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 136/274 (49%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ + +E++I +++L ++ +I ++A A SEA IV+ + +G Sbjct: 2 TDILTVIKELEATFKPSEAKIAKYILDNADVVTELSINELARACDTSEASIVRFCRTIGL 61 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF+ L+ + S+ + L + D+ DV+ K+ N + I S+++V I + Sbjct: 62 KGFQELKIKIAVSLSKQTKKLDGGITDDDDVSDVIQKIANFNKQAIDNTISLLDVKSIIK 121 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A + D YG S + D KF RI + C AY D H+ + SA+ L++GDV Sbjct: 122 AVDALSNANKIDFYGVAASGTVAYDAMLKFARINIPCTAYQDTHLQLTSAANLKKGDVAF 181 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T ++ A+E+AK+ GA I +T P+ K+AD + + E ++ Sbjct: 182 GISYSGCTREIVEALEVAKEAGATTISLTKFGQFPLVKVADINLFVSSEEPLFRSGATAS 241 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 RI QLT++D F+ VA+ ++ T + Sbjct: 242 RIAQLTVIDILFILVAKRKYNDVVKFLENTTEAL 275 >UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n=51 Tax=Bacillus RepID=A8FJ30_BACP2 Length = 285 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 144/276 (52%), Gaps = 1/276 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R G+ I E + +I ++A+ A SEA I ++ K LGF GF Sbjct: 9 IEKIRAASRGLPPKLKAIAEHITSEPRDIIHLSIVELAKKTASSEATIFRLCKRLGFEGF 68 Query: 77 RNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++L+ A+ Q++ + E++ D+ + KVF + + + ++N +++ +A Sbjct: 69 QDLKIAIAQEIDQTKPNYVDEEMSLDDDMAVFMQKVFQTNISALKDSFQLLNPEDVEKAI 128 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + ++A++ + YG+GGS I D HKF+R G+ C + D+H MSA LL + V+ + Sbjct: 129 QIIHEAKRLEFYGSGGSGLIATDAFHKFMRTGINCIVHTDSHFQAMSAGLLDQHSTVIGI 188 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSGR D+ A++ AK GAK I IT SP+++LAD + + ET SAR+ Sbjct: 189 SHSGRNKDLLDAMKTAKSKGAKTIGITSYQRSPLSQLADVTLYTATQETAFRTEAMSARL 248 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 QLT++D + ++A L ++ N+++ + Sbjct: 249 AQLTVIDVLYFALAHLRQQETITNLKQMRETISQKR 284 >UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSK7_9FIRM Length = 282 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 148/270 (54%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +R + +T E +I ++L+ + I ++AE VS+A +V+ + LG+ G++ Sbjct: 8 EIIRGRMNYLTNTERKIANYVLENYDQVLNSNITELAENAKVSDASVVRFCRSLGYKGYQ 67 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + + E+ L L ++P + +K+FN+ + + + +N+ E+ +AA+F Sbjct: 68 DFKINAAKDVLPREKHLNPILEESDSPDMICHKIFNLEISVLERTLASLNMREVEKAAQF 127 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 + ++ +G+GGS + D HKF++IGV+ + D + +M++SL EGDVV+ ++H Sbjct: 128 IFHGKRVLFFGSGGSLLVGQDALHKFMKIGVQVYVHEDRDLQLMASSLAGEGDVVIGISH 187 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG V ++ AK+NGA+ I + +P++K+AD +I + + ET + S RI Q Sbjct: 188 SGSNYSVLRCLKNAKENGAQTIALVSRGKTPLSKIADVVIDTASEETIFQSESVSTRIAQ 247 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L ++D+ VA +N +++ +QKT Sbjct: 248 LAIIDSLVSIVAFMNYDESYRAIQKTRKAT 277 >UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A8S9N1_9FIRM Length = 321 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 144/282 (51%), Gaps = 7/282 (2%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR Q ++ E +I +++L+ + + I+D+A S + +V++ +++GF Sbjct: 36 NVLLRLREVQPSLSSTERQIAQFILENPDETTTLTIRDLARRSFSSPSSVVRICRVIGFQ 95 Query: 75 GFRNLRSALEDYFS---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ LR AL + ++ ++ ++ Q++V+KV + ++++++ Q ++ +DE+ Sbjct: 96 GYKELRHALTLELATLGENGSHREKDITPQDSLQEIVDKVTHKNIQSLLDTQRLLLLDEL 155 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + AR L+G G S + D KFLR+ C D+H ++ A DV Sbjct: 156 EQCVELIANARTVLLFGIGSSLCVAKDTYLKFLRLDKPCVVNEDSHSQLLQARNATAQDV 215 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 +V ++SG+T ++ ++ K GA +I +T Y S +A+LAD+++ A E+ Sbjct: 216 GIVFSYSGQTMEMIQCIKEMKAGGAPVIAVTRYYPSEVAQLADHVLYVAANESLFRNGAM 275 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 S+R+ QL ++D + + A N E + KT + PG Sbjct: 276 SSRLSQLNVVDILYTAYASRNHEDTMRRLTKTH----IYKPG 313 >UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJF9_BREBN Length = 297 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 74/283 (26%), Positives = 143/283 (50%), Gaps = 1/283 (0%) Query: 5 EFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 + + L +++ T++E ++ +L+ + ++ D+AE V E + Sbjct: 11 PLTATITKTNTLL-HIQSLLPSFTKSEQKVAHIVLQQTDSVIYSSVIDLAEKAGVGETTV 69 Query: 65 VKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 ++ + +GF G++ + AL + L E+ D++ + +KV + I + + Sbjct: 70 LRFCRKIGFHGYQEFKLALAQELVNPVKNLHGEVGEDDSLDIITHKVTATNQQAIGDTSA 129 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 + ++++ R +A YG G S D ++ FLRIG+R A+ ++H+ M+A+ Sbjct: 130 LFQLEQLERCVDLLQKANTIHFYGVGTSAVTAQDAKYTFLRIGLRVDAFNESHLQAMAAA 189 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 L GDV + ++ SG T D ++++AK+ GA IC+TH SPI +AD + + A E Sbjct: 190 TLGPGDVAIGLSVSGSTKDTIDSLKVAKQAGAACICLTHYRRSPITNVADITLLTAAQEG 249 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 PL G + +A+I QL +LD ++ N E+A + ++T V Sbjct: 250 PLQGGSLAAKIAQLHVLDVISTTITMRNKEKALLYKERTAKAV 292 >UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNZ1_HIRBI Length = 297 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 139/277 (50%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R++++ + + S I +++L N ++ ++AEA SE ++ + + LG S Sbjct: 20 NVISRIRIRKDSLGPSTSTIADYVLGHANAVVGMSVTELAEATGTSEGSVINLCRQLGLS 79 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF+ L+ +L + Q + +L + V K+F+ + E SI++ D I A Sbjct: 80 GFQQLKLSLAQEVVRPVQFIHEDLQPSDDTSTVCQKMFHAGSEALRETLSILDPDAISMA 139 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A + ++YG G S I D Q++ LRIG+ + D+HI +SAS VL Sbjct: 140 VDVIRSADRVEIYGIGSSAPIAEDAQYRMLRIGLDAKVVVDSHIQAISASRTGPNVAVLT 199 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG T + AA LA+ GAK I IT+ SP+ AD + + A ET ++R Sbjct: 200 ISHSGSTHETLAATRLARDAGAKTIIITNFASSPLQAYADVKLYTMARETKFRSEAMTSR 259 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 I QL +LD ++A + E+A +++T ++ Sbjct: 260 IAQLCILDVLIAALALDDYERATTVLRQTSEVLSIKR 296 >UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=Proteobacteria RepID=A1AYM0_PARDP Length = 287 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 118/279 (42%), Positives = 176/279 (63%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + +RMK +T E+R+V+ + +L A++ V+E VS+AM+VK++K LG Sbjct: 7 PRTVGAQIRMKLPFLTPLEARVVDTITGRNDLDLTTALRQVSEDAGVSDAMVVKIAKKLG 66 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F+GFR+ R AL Y L SE++ +++ D++ KVF +++ + E SI++V Sbjct: 67 FNGFRDFREALVVYRQTDVASLHSEISPEDSSADIIRKVFQTSIQALEETMSIIDVSAFD 126 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 RAA + ARQRD YG GGS I DV HKFLRIG+R D H+M+MSA+LL DVV Sbjct: 127 RAATLLHGARQRDFYGVGGSAQIARDVAHKFLRIGLRAGVQDDPHMMLMSAALLGPEDVV 186 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +HSG TS+V A LA++ GA++I IT+ +P+++LAD +CS A +PLLG NA+ Sbjct: 187 VAFSHSGTTSNVIEAARLARQQGARVIAITNYATAPLSELADIALCSTAQGSPLLGENAA 246 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ARI QL ++DA FV+VAQ ++E+A + +T VD Sbjct: 247 ARIAQLNIMDAIFVAVAQRDLERAEAQLARTRNAVDNKR 285 >UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7K6_PAESJ Length = 284 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 2/278 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 I + + T E + +++L+ + +I D+AE V EA I + K L Sbjct: 2 REISITSTIHSHYNRFTATEKKTADYILEHADAVVYMSITDLAEGCGVGEASIFRFCKAL 61 Query: 72 GFSGFRNLRSALEDYFSQSEQV--LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 GF G++ + AL S ++ L ++ + +D V+K + + E ++ +D Sbjct: 62 GFKGYQQFKIALAHSISADNEIPQLSGQVKIQDTLEDAVSKTLQSNINALNETFKLIQLD 121 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I+RA ++ + YG G S + +KF+RI + D+H MSA+L+ E Sbjct: 122 SINRAIDLLIRSDRFIFYGVGSSLMTAMEANNKFMRITNKTGCSVDSHQQAMSAALMGER 181 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV +++++SG T D + AK+ GA II IT SP+ +D + A E PL G Sbjct: 182 DVAIIISYSGSTKDSIEVAKKAKERGAAIIVITRFVKSPLTSYSDITLLCGANEGPLQGG 241 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + SA+I QL LLD +V + E + +N + T A V Sbjct: 242 SLSAKIAQLYLLDVLYVEYFKRTYEASIVNKENTSAAV 279 >UniRef50_B9K581 Transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) n=3 Tax=Proteobacteria RepID=B9K581_AGRVS Length = 291 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 115/281 (40%), Positives = 175/281 (62%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P +RM +T E+++V+ + + S ++K +AE VSEAM+VK++K LGFS Sbjct: 10 AVGPRIRMMMPMLTPLEAKVVDTVFGMRDFSEETSLKQIAENAGVSEAMVVKITKKLGFS 69 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR+ RS++ Y Q + EL+ D+ ++V KVF ++ + E +I+++ +A Sbjct: 70 GFRDFRSSVSQYNRQPTTEMHQELSVDDTSLEIVQKVFRTSIHALEETLAILDMAAFDQA 129 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A ++AR RD YG GGS I DV HKFLRIGVR + D+H+M+MSA+LL + DV + Sbjct: 130 ADMIHKARNRDFYGVGGSAQIARDVAHKFLRIGVRASVFDDSHMMLMSAALLADTDVAIG 189 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +HSG T V A++LA+KNGA I +T+ S +A+ AD ++CS A +PL+G NA+AR Sbjct: 190 FSHSGNTIAVIEALQLARKNGASTIAVTNYGSSALAQSADVVLCSTAQGSPLMGENAAAR 249 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGAL 295 I QL +LDA FV+VAQ + + A N+ +T + V L Sbjct: 250 IAQLNILDAIFVAVAQRDYQAAERNLDRTMSAVTSKRRDRL 290 >UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=Bacillales RepID=C4L752_EXISA Length = 282 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 142/274 (51%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +R +++ E RI +++LK I VA+ L V+E+ + + + +GF G++ Sbjct: 8 ARIRGAYSTLSKKEQRIADYILKQPEQIIHHTINQVADDLDVAESTVFRFCQRVGFKGYQ 67 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 L+ AL Q + ++ + ++ K+F+ +TI + I+ + +A Sbjct: 68 ALKIALASDVVAPLQDIHEDITETDTALEIAEKIFSTNGKTIESTRQILEGVSLEKAVEL 127 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 F AR+ + +G+GGS + D HKF+R G++ A ++H+ +MSAS L DV +V++H Sbjct: 128 FLGARRIEFFGSGGSAVVALDAYHKFVRSGLQVSAMLESHMQLMSASQLTTADVAVVISH 187 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG + + +L K+ G +I IT+ SP++K+AD + + + ET ++RI + Sbjct: 188 SGASKETLDIAKLLKEKGVPMIAITNYAKSPLSKIADVSLYTVSQETAFRSEALASRIAE 247 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L+L+DA F +V E A ++Q+ + Sbjct: 248 LSLIDALFTAVMMRRGEAARTSLQQMREAISMRR 281 >UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C77F Length = 277 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 130/270 (48%) Query: 21 RMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR 80 R+K+ +TE E I +++++ + + E S A +V+ +K LG+SGF L+ Sbjct: 6 RIKEASLTETEKEIAQYIIEHPEQVLDDSAMKLGEKTHSSSAAVVRFAKKLGYSGFPQLK 65 Query: 81 SALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQ 140 L S + + L DE ++NKV + + TI + +++ + + Q Sbjct: 66 IELAKDLVGSIPEVDNLLHPDEDMATLMNKVHHSQIVTIDKTYHLLSASTLEDVVKALEQ 125 Query: 141 ARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGR 200 A+ L+G GGS +C D HK +RIG YPD H+ M S + E D+ + V++SG Sbjct: 126 AKHVYLFGVGGSAIVCDDFIHKLMRIGKYACFYPDVHLQMTSVPNMTEEDLAIFVSYSGE 185 Query: 201 TSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTL 260 T + A + AK+ + IT S ++ + KL D+++ P+ E L S+R L + Sbjct: 186 TKGIVTAAKWAKEMNIPSVAITQSAYNKLGKLVDHVLTIPSQEQSLRIGAMSSRYSSLIV 245 Query: 261 LDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 +D + + + N E+ + T I+ Sbjct: 246 VDLLYYGLVKRNKEKYAQKIINTRRIIQEM 275 >UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=Clostridium RepID=A7GD47_CLOBL Length = 281 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 145/279 (51%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ +R + MT++E +I E++ K + + +++A + S A I++ +K +G+ Sbjct: 1 MGVLLRIRENFDSMTKSEKKIAEYIFKSPKDIISDSAQEIAIKTSTSPASIIRFTKKVGY 60 Query: 74 SGFRNLRSAL-EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 + + AL + +++ + ++++ ++NK+ N + TI + + +V+ +++ Sbjct: 61 NSLNEFKFALVAEEYTKESTEFDYIINYNDSIDSIINKLGNKVIDTINDTKELVDDEKLL 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A + A LYG G S + D Q+K LRI + D+H+ + + + DV Sbjct: 121 EAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDVA 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG T +V AVE AKKNGA I IT S ++ +AD + P+ E L S Sbjct: 181 VAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +R QL + D+ F+ +A+ N+++ N+ T +V+ Sbjct: 241 SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLK 279 >UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Bacillales RepID=C6J1X3_9BACL Length = 289 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 129/272 (47%), Gaps = 1/272 (0%) Query: 22 MKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRS 81 E ++ E ++ E++L+ I ++A A +S + + + K F GF + + Sbjct: 10 SHLETLSPQERKLGEYILESPATVIHQGITELANACGISPSTVTRFCKTFHFKGFPDFKM 69 Query: 82 ALEDYFSQSEQVLP-SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQ 140 L + ++ Q +V + L +I + +++++++ RA + Sbjct: 70 KLASELAHKPAENHYQDIIAGNDLQKIVEAMEANHLASITDTTRLLDMNQLSRAVEALCR 129 Query: 141 ARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGR 200 A++ DLYG S+ + D K +RIG C A+ D+H+ + SAS L EGDV L +++SG Sbjct: 130 AKRIDLYGVATSSIVAQDFYQKLVRIGKNCTAFADSHMQITSASSLGEGDVALAISYSGE 189 Query: 201 TSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTL 260 T + A+ AK +GA + +T + +A LAD + S + E + + ++RI QL + Sbjct: 190 TPETIDALRCAKDSGATTLSLTQYSSNSLASLADIALFSSSLEEGMRRGDMASRIAQLHV 249 Query: 261 LDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +D F + L + ++ + V + Sbjct: 250 IDILFTGMVSLEFQDFIPKLESSYQNVQIYRK 281 >UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=Burkholderiaceae RepID=Q1LPJ6_RALME Length = 338 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 139/270 (51%), Gaps = 1/270 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + + + +E R+ +++ + G + ++A+ VS+ I + LG+ G Sbjct: 1 MRDRILAVYDSLRPSERRLADYVARHGASVIRLTMPELADRAGVSQPTIARFCAALGYDG 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F+ + + ++ D+ P D+ KVF+ T+ T+M ++ ++ D+I Sbjct: 61 FKEFKLQFAQNVGGGTPFVHQDVEADDRPADIAGKVFDRTIATLMSVRNALSADQIEHGI 120 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 R AR+ + YG G S + D+QHKF R+G+ AY D H+ MSA+LL+ GDV ++V Sbjct: 121 RLLAGARRIEFYGCGNSGIVALDIQHKFFRLGIPTTAYSDPHVFSMSAALLRPGDVAVLV 180 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SGRT D+ A LA+ +GA ++ +THS SP+A+LAD + S E + ++RI Sbjct: 181 SNSGRTWDMLTAATLARSSGASVLALTHSG-SPLARLADVCVFSDVEEDSEVYTPMTSRI 239 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 L L D VA + +Q+ A Sbjct: 240 CHLVLGDVLAAGVALDRADSVAAGLQRAKA 269 >UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1J5_9FIRM Length = 282 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 148/275 (53%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + K +T++E +I E++L+ N I ++AE + S+A IV+ KL G Sbjct: 3 NTVFLQLIEDKLGTLTKSEKKIAEYILEHPNRVVDATITELAERIGTSDASIVRFCKLFG 62 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G++N + L + L L + + K+FN + T+ E ++NV+ + Sbjct: 63 CKGYQNFKIRLAREVVPHYKQLNVALEQHDTALTICQKIFNTEIATLHETLEMLNVEHLQ 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A+ +A +++G+GGS+ + D++HKFL++G+RC DA I MSASLL++GDV Sbjct: 123 TMAQRIREADYIEVFGSGGSSVVAQDIRHKFLKVGIRCTVLLDADIQAMSASLLKKGDVA 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++H+G T V +++A+KNGA +I +T SPI ++AD +I + ET + S Sbjct: 183 IGISHTGSTKSVFHCLKMARKNGAYVILLTTQAKSPIGRIADLVIPVGSKETLFKSESTS 242 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ARI +L ++DA + ++ N+ + KT Sbjct: 243 ARIAELVVMDAVLALAVSDDYKKYNVKITKTRDAT 277 >UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8M2_9ACTN Length = 291 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 133/275 (48%), Gaps = 3/275 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR + E + ++L+ + S ++K +A VS A +V++ K +GF Sbjct: 3 NIIIRLRENIGFLNPAEKAVARYVLQCPHESNRLSVKALAARSFVSPAAVVRMCKSIGFE 62 Query: 75 GFRNLRSALEDYFSQSEQVLP---SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF+ ++ L + + +LP ++ ++ + ++ K+ + ++ + +++ + I Sbjct: 63 GFKEFKTELTRELATEKLILPLDTKDIKQNDTLESIIKKITLKNIHSLYDALRLIDPETI 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A + L+G G S D KFLR+ C D H+ +++A DV Sbjct: 123 EKAVELLQACDRILLFGLGASLIAAKDANLKFLRVNKTCLINDDWHLQLITARNSTSQDV 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 +V+++SG+T++ E+ K N II IT SPI+KLAD ++ + + E+ Sbjct: 183 GIVISYSGQTAETLTCAEILKHNNTPIIAITRCIESPISKLADVLLYTTSNESLFRSAAM 242 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 S+RI QL ++D + + A + E+ + KT + Sbjct: 243 SSRISQLNIIDILYTAFAVSDYEKNFTYLSKTRIV 277 >UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIQ0_CLOPH Length = 284 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 126/276 (45%), Gaps = 3/276 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ + T++E + +++ + +I D+AE V + + + K L + Sbjct: 4 GIFARIESSYSKFTKSEKIVADFVFENPEKVLYTSITDLAEICGVGDTTVFRFCKALKLN 63 Query: 75 GFRNLRSALEDYFSQ---SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ + L + S+ + ++ D+ Q + K + + + E +N + + Sbjct: 64 GYQEFKMFLAQDIAVRTGSDYTINGSVSQDDDIQTICKKALAVDIAALTETFEGLNFEAV 123 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + A + +G G S I + + KF+RI + D H+ MSA+LL D+ Sbjct: 124 TKVVDMISNANKVQFFGMGSSGVIALEAKMKFMRILPNVEHIADCHMQFMSAALLSSRDL 183 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++SG T D LAK NG K++ IT +S +A ++D +I + E PL G + Sbjct: 184 AIIFSYSGSTKDSIEIANLAKSNGCKVVSITRYVNSHLANISDVVIPCGSNEGPLDGGAS 243 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 S ++Q +LD ++ + Q+ +N KT + Sbjct: 244 STSMVQFYILDILYLLYFTKHYHQSKLNKAKTTESI 279 >UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI47_9CLOT Length = 285 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 149/260 (57%) Query: 29 ENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFS 88 +NE +I E++ ++ D AEA VSEA IV+ ++ LG+ G++ ++ ++ Sbjct: 22 KNEMKIYEFIEINRKEIIHMSVADAAEACGVSEAAIVRYAQKLGYKGYQAMKISIAQDVI 81 Query: 89 QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYG 148 + Q + +L+ + +V+K+F+ ++++ + +++ + I A R+ +G Sbjct: 82 EPGQQIYGQLSKGDTIPTIVDKIFDSNIQSLRDTSDVLSRENIDEAVNLILGCRRLLFFG 141 Query: 149 AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAV 208 GGS + D QHKFL+IG A+ D+++ M+AS+L DV++ V+HSG + D+ A+ Sbjct: 142 VGGSGCVAMDGQHKFLKIGYMAMAFTDSNLQAMAASVLTSRDVLVAVSHSGASKDILMAM 201 Query: 209 ELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSV 268 ++AK++GAK I IT+ SPI + AD ++ + + ET S+RI +LT++D ++ V Sbjct: 202 DIAKQSGAKTIAITNYGKSPIVEKADVVLYTSSNETAFNSDALSSRIAELTIIDMLYIGV 261 Query: 269 AQLNIEQANINMQKTGAIVD 288 + +++ N+ KT +D Sbjct: 262 SYKRYDESYANILKTRKALD 281 >UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9W4_9FIRM Length = 280 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 138/279 (49%), Gaps = 5/279 (1%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 A+PN + +++ +T E +I +++ K +I ++AE V++A + + Sbjct: 2 AIPN---VLLSMQLSYNQLTRTEKKIADYVQKNAQKVLFMSITELAEECHVADASVHRFC 58 Query: 69 KLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 + +G G++ + L + SE + P + +V L I E +++ Sbjct: 59 RTIGAKGYQEFKMWLSINMGHEKGEEESEEEDGKEP--IFQQVLKSHLEAINETNQLLDK 116 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 +++ +A R +ARQ +G G S + +KFL + + D H+ M+AS++ E Sbjct: 117 EKVDQAVRMLTEARQIMFFGVGDSKTAAIEANNKFLHVTPKVMCAGDTHLQAMAASMMTE 176 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 D++ VV++SG T D ++AK+ GAK+I IT SP+ + +D ++ + E PL G Sbjct: 177 EDLLFVVSYSGSTKDTVEVAQIAKEAGAKVISITRFLKSPLTEFSDCVLICGSKEGPLEG 236 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + A++ QL ++D + + N ++A N QKT V Sbjct: 237 GSMGAKLSQLHIIDILYQCYFKANGKKARENRQKTANAV 275 >UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J4B4_9BACL Length = 288 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 136/276 (49%), Gaps = 3/276 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R +E +T E + E++L +IK +A+ S+A +++ K +G+S Sbjct: 7 NILIKIRDMKENLTPVERMVAEYILANTEDIPHLSIKSLAKLSKTSDASVLRFCKTMGYS 66 Query: 75 GFRNLRSALEDYFSQSE---QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+R+ ++ + + +++ + ++ + +++I + S+++ E+ Sbjct: 67 GYRSFIVSISAALGSMDDERKDQYTDIQPGDDLDTIIANISRNNMKSIEDTLSVLDRGEV 126 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 RA + + + +G G S +C D + KF RI C +Y D H + +A+LL +GDV Sbjct: 127 ARAVKALRASNRIVFFGIGASGLVCQDGEQKFSRINKMCHSYTDGHSQLTAATLLGKGDV 186 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + V++SG T ++ +E+AKKN A + IT S +A AD ++ PE + Sbjct: 187 AIFVSNSGNTLEIIETLEIAKKNNATTVAITKYNKSELADKADILLGISTPEITMRSGAM 246 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +RI LT++D F VA + + KT +I+ Sbjct: 247 GSRIAMLTIIDMLFAGVASAEYQNVKKYLTKTHSIL 282 >UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ITC5_RHOCS Length = 280 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 67/272 (24%), Positives = 133/272 (48%), Gaps = 1/272 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R + G+ +E +I + +L+ + ++ ++A VS+ +V+ + +G SG Sbjct: 1 MLDRIRSMRPGLRRSEQKIADIVLRQPHAVVNASVAELAHDADVSQPTVVRFCRSIGCSG 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 +++ + L + + D+ ++ K+ N ++ + ++ +N D + A Sbjct: 61 YQDFKLRLAQDLAAGPARPEDAVRPDDPVAEIAAKLLNRSIGALTRLRNQLNPDALEAAV 120 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + + R+ D YG G S + D Q+KF R+G+ A+ D+H+ M+A+LL V L V Sbjct: 121 QVLTETRRLDCYGFGASGVVALDAQNKFFRLGLPVVAHTDSHVQAMAAALLGPQGVALAV 180 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + SGRT ++ +V+LA GA++I IT SP+A A + APE ++RI Sbjct: 181 SRSGRTRELLRSVDLALAGGARVIAITA-GGSPLAGRATVPLLVDAPEDSSPYTPMTSRI 239 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L ++D V+ A +++ A + Sbjct: 240 AHLAVVDILQVATALRRGVHTGDPLRRPAAAL 271 >UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7S3_BREBN Length = 288 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 146/269 (54%), Gaps = 1/269 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 L+ + + +E ++ +++L +++ +AE VSEA I+++++ L G++ L Sbjct: 12 LQAILDQLKPSERKVADYILAHPEDVVKLSVQKLAEYSGVSEATIIRLARSLNMKGYQEL 71 Query: 80 RSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + + Q+ + E+ + + + ++ V +++I + S+++ +E+ +A Sbjct: 72 KLRVAGDLTKQTARGSYQEIMMEGSVESIMQAVSWNNIQSIQDTLSVLSNEEVKKAVDVL 131 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 AR+ D+YG G S I D++ KF RI + C+AY D H + SA L E DVV+ +++S Sbjct: 132 SVARKIDVYGVGASAVIADDIRQKFSRINLWCEAYSDFHAQLTSAVTLTEKDVVIGISYS 191 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G+T D+ ++ AK+ GA II +T SP+A+LA+ + + + E + ++RI QL Sbjct: 192 GQTEDIIQSLTEAKQQGATIITLTKFGPSPVAELANIRLFTSSVEKSIRSGAMASRIAQL 251 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++D F+++ E+ ++K+ V Sbjct: 252 NVIDILFITMISRMQERVIPLLEKSRLAV 280 >UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TJ91_CLOBB Length = 285 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 131/274 (47%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 G + + E ++ +++L+ +I ++AE SEA + ++ L Sbjct: 5 KNRGCLERITNIYSELKGAEKKVAQYVLENPKNIIHFSITELAEVSKASEATVFRLCSKL 64 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+ G+++L+ L + + E+ ++ ++ K+ + + +I I +++ Sbjct: 65 GYKGYQDLKINLAGSVIEPIDNIYEEVKENDDTYIIMRKIMSSNINSIESTLKINKTEDL 124 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A A++ +G GGS I D HKF+R G+ C A D+H +M +S+ GD Sbjct: 125 DKAIAIILNAKKIMFFGMGGSWTIANDAYHKFIRTGIDCVASCDSHWQVMFSSMANSGDA 184 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++SG ++ + LAKK G KII IT + SP+AK++D + + E+ Sbjct: 185 IIAFSNSGSNKELVENINLAKKRGIKIIAITGNEKSPLAKISDLHLIAYGNESMFRSEAM 244 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 +R+ L ++D +V VA ++ N+++ Sbjct: 245 ESRLTSLMIVDWLYVGVAIKRKDKTLGNLERIRN 278 >UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I8T9_9ACTO Length = 312 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 137/288 (47%), Gaps = 7/288 (2%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 ++P + +R + + + ++ E +L+ + ++ S+A + + Sbjct: 18 SMP-PTDVTTLIRTELPRLAGSLRKVGELILEDPAAVTHCSAAELGRRTGTSQATVTRFC 76 Query: 69 KLLGFSGFRNLRSALEDYFSQSE------QVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 + +G +++L L + E + +++ D++ + VV V + LR I + Sbjct: 77 RAIGLESYQHLLIELAQERGRGEVSDWGSAEIGPDISPDDSLERVVQVVGSADLRAIQQT 136 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 +++D + RAA+ +AR+ D+YG GGS A+ + + + RIG + + + + H S Sbjct: 137 IERIDLDALERAAQALAKARRIDVYGVGGSGAVAQETETRLFRIGCQVRGWTEVHGAATS 196 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 A+LL DV + ++HSG T + E+AK+ GA I IT SP+AK AD + S Sbjct: 197 AALLTPADVAIGISHSGATRETLEPFEMAKERGATTIAITTDPRSPLAKAADIRLISATS 256 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ET + R L ++D +V V Q+ ++A+ ++ T I Sbjct: 257 ETSFRTGSIGGRHSVLMIVDCLYVRVGQVAYQRASASLALTDHITPQH 304 >UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=Propionibacterium acnes RepID=D1YCB1_PROAC Length = 290 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 6/284 (2%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L P + M + M E+++ +L + + A + +AEA VS A +V+ + LG S Sbjct: 4 SLLPRIDMARTTMRPAEAQVAAVILAKPDWTLAASTSQLAEAAGVSPATVVRFCRALGMS 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSE------LAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+R LR+ L S+ L + D++ ++ K+ RTI V+ Sbjct: 64 GYRELRTELARDLSRRTLELERSSVAEGTITLDDSLTQMITKIAFHEARTIENTARAVDA 123 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 DE+ A A + L+G G S + +D+ K RIG+ CQ + D H+ ++ A+L + Sbjct: 124 DELEAVASAISIAPRTALFGVGSSGLVASDLSEKLERIGLVCQHHQDTHMQLVHAALCKR 183 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 V L ++ SG T +V A+ +A+K+GA + +T SP+ +LAD+++ + A ET + Sbjct: 184 PCVALGISFSGNTQEVVEALTVAQKHGATTVAMTGLPDSPVGRLADHVLVTSARETQVRA 243 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 S+R+ QL ++D F VAQL ++ + T V Sbjct: 244 GAMSSRMAQLAVVDFLFARVAQLCMDDLETLLSSTRTAVSTHRK 287 >UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulator CA_C0191 n=5 Tax=Clostridia RepID=Y191_CLOAB Length = 283 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 131/275 (47%), Gaps = 2/275 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G ++ + +E +I E++L +IK++A S++ +V++ K+L + Sbjct: 3 GSLIRIKEIINDLNPSERKIAEYILNNSKAISDLSIKELAGKSGSSKSAVVRLCKILNYK 62 Query: 75 GFRNLRSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G++ R A+ E+ +++ + ++ + ++I +++ + + Sbjct: 63 GYKEFRIAIAKDTVNVDKEENRYTDINPKDDLHTIIKNISYNNKKSIDNTMEVLSEELVE 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A+ +A + D YG G S + D KF+RI +A PD H+ + AS L++GDV Sbjct: 123 KASEAISKAYRVDFYGIGASYIVAMDAFQKFMRINKNVRATPDTHLQVEFASNLKKGDVA 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++++G T D +++ AK+ GA I +T + I+ L D + +PE S Sbjct: 183 VAISYTGETKDTFESIKAAKEAGATTISVTKFGSNSISDLCDINLFVLSPEITFRSGAMS 242 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +RI QL ++D F SVA E+ ++ T Sbjct: 243 SRIAQLNVIDILFTSVAGRMFEEVKEFLENTRKST 277 >UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=Actinomycetales RepID=A8LV24_SALAI Length = 320 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 140/279 (50%), Gaps = 5/279 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ +R + +T R+ E +L + I ++AE S A I + + +GF Sbjct: 32 GVLARVRAGADDLTGALRRVAEHVLSDPEAAARATIVELAERSGTSPATITRFCRAMGFE 91 Query: 75 GFRNLRSALEDYFSQSEQV-----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 G+ +LR + ++ + E+ + + V++++ R + + +++++ Sbjct: 92 GYADLRLGIAAETGRARLAGWTVDIGREIQPGDPLRRVLDQIIAADTRAMHDTAALLDLA 151 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ RAA A + +++GA GS + ++Q RIGV A+ D H + SA+LL+ G Sbjct: 152 EVERAAVAIAGASRVNIFGASGSALVGEEMQFMLHRIGVAAWAWSDVHEGLASAALLRVG 211 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV L V+HSG+T + + A GA + +T SP+A+LAD + + + T Sbjct: 212 DVALGVSHSGQTRETIEMLAEAGSRGATTVAVTGFPRSPLAELADIALLTASRATTFRPD 271 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 SAR QL +LD +++VAQ ++A+ +++T VD Sbjct: 272 ALSARHPQLVVLDLLYIAVAQRTHDRAHAALRRTAQAVD 310 >UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PDB4_BACCO Length = 283 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 132/264 (50%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 ++ + E +I +++L+ I VA+ L V++A + + K +GFSGF+ Sbjct: 13 RIQTMYSEFSAKERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSGFQA 72 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 L+ AL ++ + + + + + V KVF + T+ + +N +H A + Sbjct: 73 LKIALAAEAARPGKNMDEAVKDTDNEKAVAIKVFESNIETLQDTIHTLNQKHLHEAVEWI 132 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 +A+ YG G ++ I D KFL+ + AY D H+ ++SA+ + DV + ++H+ Sbjct: 133 CRAKHIVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFISHA 192 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G ++ ++ +K GAK I IT SP+++ AD + + + E + SARI+QL Sbjct: 193 GADKEMLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPLFTVSQEADFRFSSFSARIVQL 252 Query: 259 TLLDAFFVSVAQLNIEQANINMQK 282 +L+D +V+V + +QK Sbjct: 253 SLIDTLYVNVMLRYKDTNEEILQK 276 >UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=cellular organisms RepID=Q1QSE2_CHRSD Length = 289 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 1/275 (0%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L +R + E +E ++ ++L+ I D+A VSE +V+ + LG Sbjct: 2 SSALFDEMRRRMEHFRRSEQKVARFVLRHPEDVIHMRIVDLATEAKVSEPTVVRFCRALG 61 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 +GF++ + L + Q + ++ + + +F+ T+ T++ + ++ + Sbjct: 62 CNGFQDFKLKLAQMLATGSQFAQFSMNDSDSVAEFAHNIFDSTVGTLLSVRDRLDHAALG 121 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A A + + YG G S A+ D QHKF R+ + AY D H+ MSA L DVV Sbjct: 122 KAVTALAMANRVEFYGFGASGAVAFDAQHKFFRLQISTAAYTDPHMQNMSAVTLTPRDVV 181 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++ +GRT + A+V LA++ GA +I + SP+A + E + S Sbjct: 182 VAISQTGRTRALVASVRLARETGATVIGLC-PSDSPLASEVTLPLYIDVHEDTEIYTPMS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +R+ L ++D V VA+ + ++ + Sbjct: 241 SRVAHLVIIDVLAVGVAKTRGPKLAEQLKSVKKSL 275 >UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJ20_EXIS2 Length = 284 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 1/277 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ + E + + ++ +++L N I +AE S A +V+ + LG Sbjct: 4 GIFSQISAVHEELPSSSRKVADFVLAHMNEIAGMTIHHLAEESGTSAAAVVRFCRALGLK 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+ LR + ++++ ++ +E P D+V K + +++ + + ++ D I A Sbjct: 64 GYPELRMRISADTARTDLKGYHDIEKNERPADLVEKTVSNSIQALQDTAKQLSEDRIAEA 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A QAR YG G SN + D K+ R+G D H++ + + DV Sbjct: 124 ADVLDQARAIYFYGIGASNVVALDAAQKWTRVGKLTIQESDQHLVATILANASQDDVFFA 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 +++SG T +V + LAK G K+I +T + +++LAD + + APE PL S+ Sbjct: 184 ISYSGETEEVVELIRLAKIRGLKVISLTRFGDNRVSQLADIALWTSRAPEAPLRSAALSS 243 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 R+ QL +D F+S A ++ + +Q T V Sbjct: 244 RLAQLFAIDVLFLSYAAVHYDDTIERLQYTRESVKML 280 >UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQA6_9CLOT Length = 290 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 139/278 (50%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 L +G+G ++ ++ +I ++++ + + + +AE+ VSEA +V+ + Sbjct: 8 LQSGMGCTERIQATYSALSGASKKIADFVIDHPDQAVHMTVVQLAESCEVSEASVVRFCQ 67 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 L ++GF + +L + Q++ ++ ++ ++ KVF + + E ++N Sbjct: 68 CLQYAGFYEFKLSLAAEIVPASQMIQEDITVEDTEPTILEKVFAGEQQALQETLQMLNRQ 127 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A + + + + G + I D ++ LR G+ + D + ++ AS+L+ G Sbjct: 128 DFISAVNHIAFSNKVEFFSCGNARPIAQDAHYRLLRTGIDSRIGIDDYDCLIHASMLRTG 187 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++HSG T + +E AKKNGA ICIT +PI +++D + S + ET Sbjct: 188 DVAIGISHSGSTKNTIKMLEEAKKNGATTICITGMEKAPITRVSDICMVSHSKETMFRSM 247 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++RI Q+ ++DA V+V+ E++ + T I+ Sbjct: 248 AMASRIAQMAIIDALVVAVSFKRFERSKQYLTLTDKIL 285 >UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIM2_KOSOT Length = 283 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 135/279 (48%), Gaps = 2/279 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + ++ T+ E +I +++K ++ +V++ L VSE IV+ + Sbjct: 1 MQGKENVLLTIETLKDSFTKTEKKIATFVVKNPQKVVYMSLTEVSDILKVSEGSIVRFCQ 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDE-APQDVVNKVFNITLRTIMEGQSIVNV 128 LG++GF + AL +Q E SE F+ + N V + I ++ Sbjct: 61 KLGYTGFHPFKIALAVSENQ-ESFSSSEFDFNSRDLSSLKNYVAQRHIDVIKNTSEFISE 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + AR + G G S D +KF+RIG+ C+ DAHI M AS L+E Sbjct: 120 EILEACVEKILTARTILISGVGASGNTAHDAFYKFMRIGLNCKTSHDAHIQAMIASELRE 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 GDV+L ++ SG T ++ ++A+K GA +I IT SP+A+ A +++ +P E+P Sbjct: 180 GDVLLAISQSGSTLEIVDIADIARKGGATVIAITGYARSPLARFAHHVLLTPTRESPFES 239 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++I QL +L+ F +V E+ +++T V Sbjct: 240 GALRSKIAQLYVLELLFTAVFHRMEEKGRKFIERTADSV 278 >UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4LA29_STAHJ Length = 283 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 2/273 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 + + +E R+ E++L+ + +++ +A+ VS A +V++SK L GF Sbjct: 5 LIIIESSLSDLNPSERRVAEYILEHPDEIINYSVQKLADLTNVSVATVVRLSKKLKCKGF 64 Query: 77 RNLRSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 ++L+ + ++ + Q +E+ D + ++V VF+ +T+ + + I++ + I A Sbjct: 65 QDLKLKIAYDLNEPGNIQRGYAEIDKDYSIEEVTQTVFHNNTKTLRDTERILSTENIKHA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +R+ +YG G S I D + K RI C + ++ L DVV+ Sbjct: 125 FELIVNSRKTCIYGIGASALIAQDFKQKLTRIDYWCDVGSSFDEQVTLSANLSSEDVVIA 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG+T D+ + +LAK+ GAK+I IT +PI+ L+D + + E S+R Sbjct: 185 ISSSGQTKDIVNSTQLAKEKGAKVISITKYGDNPISNLSDVQLFVSSSEKAKRSGAMSSR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 I L+++D ++ +A + ++ T + Sbjct: 245 IAMLSIIDILYICIASNDYLSNRQKLENTRKAI 277 >UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693BD8 Length = 265 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 125/262 (47%), Gaps = 1/262 (0%) Query: 34 IVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFS-QSEQ 92 + ++++ + + I ++AE S A I + K L F GF + + L + Q + Sbjct: 2 LASYIVEHAHEVVSMGITELAERSQTSPATISRFCKSLHFQGFTDFKLKLSGELAKQPSE 61 Query: 93 VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGS 152 ++ ++V+ + LR+I + + ++ ++ +A ARQ DLYG S Sbjct: 62 HSYQDIVAGNPLSEIVSAIEANHLRSIADTTQLNDIKQLQQAVSALKNARQIDLYGVATS 121 Query: 153 NAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAK 212 + D K +RIG R + D H+ + SAS L E DVV +++SG T + A+ AK Sbjct: 122 GIVAQDFYQKLVRIGKRTSVFSDPHMQITSASNLGENDVVFAISYSGDTEETIQALRCAK 181 Query: 213 KNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLN 272 + GA I +T +P+A L+D + + E + + ++RI QL ++D F S+ Sbjct: 182 ERGAVTISLTKFGTNPLANLSDIRLFASTLEEGMRRGDMASRIAQLHVIDILFTSLVSEE 241 Query: 273 IEQANINMQKTGAIVDFFSPGA 294 ++ ++++ +V + Sbjct: 242 FDELIPRLERSYQLVRKYRNKG 263 >UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=Bacteria RepID=A6LRF3_CLOB8 Length = 294 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 146/281 (51%), Gaps = 8/281 (2%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 ++ + +E ++ +++L G+ + +++ + VSE I++ K +G SG+ Sbjct: 10 KIKNMYNLLRSSEKKVADYVLLNGHSVSTMTLAELSRQVGVSEPTIIRFVKSIGCSGYSE 69 Query: 79 LRSALEDYFSQ--------SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 + AL + + S+ ++ + DE +DV K+ +T++ + + I+++++ Sbjct: 70 FKMALMKEWGRESVDKQYDSKLLVELHIDRDEKIEDVPVKMIGLTIKALEDTLKIIDINK 129 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 +A + D+YG G S ++ +D+++KFLRIG+ C+AY D++I + AS L D Sbjct: 130 YKKAIEMIRSSNIIDVYGVGNSGSVASDIRNKFLRIGLECRAYSDSNIQQICASHLTSND 189 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 + + V+HSG T D A+++AK++GA+ I +T+ I++ AD + ET Sbjct: 190 LAIGVSHSGSTIDTVNALKIAKESGARTIALTNFKAPAISEYADITFFTGGEETTFYSET 249 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +RI QL ++D ++ + + + ++K ++ + Sbjct: 250 MVSRISQLAIVDMLYMGILLDDYDLYTKRLEKINLLLKEKN 290 >UniRef50_P44540 Uncharacterized HTH-type transcriptional regulator HI0143 n=33 Tax=Gammaproteobacteria RepID=Y143_HAEIN Length = 288 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 143/282 (50%), Gaps = 4/282 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + +T++E +I + +L+ +L ++ ++A+ L V EA +V+ + Sbjct: 1 MAKSGNVLNKIGSLYQSLTKSEKKIADTILRSPDLVSQCSLSEIAKHLQVGEATLVRFCR 60 Query: 70 LLGFSGFRNLRSALEDYFS----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 +GF GF + L + Q E +L +E+ + + K+ + E ++ Sbjct: 61 TIGFKGFSEFKLELSIELATKDNQDESILETEIMPSDDSLTIAQKLQTAVANVMEETINL 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 +++ ++ + +AR+ L+G G S D ++K +RIG + A + H M M A+L Sbjct: 121 LDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAAL 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 L DV + ++HSG +++ +++AK+NGA + +THS SP+ + ADY++ + + Sbjct: 181 LTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGK 240 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L G + +I QL +LD + + Q + A QKT ++ Sbjct: 241 LQGDSIGTKIAQLFVLDLIYALLVQGEEDIAAQTKQKTLNVI 282 >UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A8RRF4_9CLOT Length = 289 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 131/273 (47%), Gaps = 3/273 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ + E ++ +L + + +IK +A+ S A IV++ + +GF Sbjct: 3 SVLVRIQEYSAQASGAEKGVLRFLRENPEEAAGYSIKQLADKTFSSAATIVRLCRKMGFD 62 Query: 75 GFRNLRSAL---EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ L+ +L +S + + E+ D++ +++VNKV + ++ + +V++D + Sbjct: 63 GYKELQKSLLYESALRRESTRPMEQEIKKDDSLEELVNKVTYKNIVSLDNTRKLVDLDIL 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 ++ +++ L+G G S + D+ K LR+ C D H ++ A ++ D+ Sbjct: 123 NQCVELLDRSQTVYLFGIGSSLLVARDMYLKLLRVNKACVICDDWHAQLLQARNIRSCDL 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 L+V++SG T ++ A+ A +I I+ SP+ +LADY + A E Sbjct: 183 ALIVSYSGLTEEMITCAREARLREAPVITISRFEQSPLVRLADYNLAVAATELIFRSGAM 242 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 S+RI QL ++D + + ++ +KT Sbjct: 243 SSRISQLNMIDILYTAYVHKRYDECMEQFRKTH 275 >UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWE9_9CLOT Length = 301 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 1/285 (0%) Query: 3 QSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 ++ + NG L + K+ +++ E E++ +I D+AE SEA Sbjct: 13 ANDMGENISNG-TLYDRVEEKRGSLSKKELETAEYMAAHQEQLIYSSITDLAERAGSSEA 71 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 + +V LG+ GF+ L+ + + ++ + L D + ++ K+F+ + T+ Sbjct: 72 TVTRVCGKLGYRGFQALKVGVARELTTPQEKIHENLEADSPAEVIIEKIFSSAIETLSMT 131 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 Q +NV + + +AR+ + G G S +I AD QHKFLR+ + AY D H+ M++ Sbjct: 132 QKSINVKAVAASIDALCRARRIIIIGNGNSASIAADAQHKFLRLDLNAHAYTDDHMQMIA 191 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 S + + DV+L +++SG + +V A AK+ GA +I +T+ SP++KLAD + + + Sbjct: 192 VSSMTDQDVLLAISYSGSSRNVVEAAHQAKEQGATVISLTNEGSSPVSKLADICLNTYSQ 251 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ET S+R+ +LT++D + VA ++A N + + Sbjct: 252 ETRYRTYAISSRMAELTIIDTIYTGVALRLGDKAIANFEALERAL 296 >UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=Gammaproteobacteria RepID=C4L7F8_TOLAT Length = 292 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 111/277 (40%), Positives = 170/277 (61%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +RM G++ E +I EWLL GN+ +IK VAE L VSE +IVK+SK LGF+GFR Sbjct: 13 AKIRMALPGLSNTERQIAEWLLAKGNVESKTSIKSVAEQLEVSEPLIVKLSKKLGFAGFR 72 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 LR AL +Y S E+ ++ + V+NKVF +++ + E +S+ + I AA+ Sbjct: 73 ELRQALVEYLSSLPIDSEQEIEPTDSVESVLNKVFANSIQAMKEARSVADPILIANAAQL 132 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 + A+ ++G GGS A+C D +HK LRIG+ +AY D H+M+M +S L E DV++V++ Sbjct: 133 IFNAKNVVIFGVGGSAAVCQDFEHKLLRIGILSRAYSDFHMMLMVSSQLDENDVIVVISQ 192 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T ++ AVE AK+ +++ICIT++ S +A+LADY I SPA LLG+NA ARI+Q Sbjct: 193 SGDTRELLKAVENAKQRHSRVICITNNDTSALAQLADYAIFSPAKGGILLGQNAVARIVQ 252 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 L LLD F+++ + ++ + + +V Sbjct: 253 LNLLDVLFIAILLQDHDKNREKLTRGSRVVRHLHGKG 289 >UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulator ybbH n=7 Tax=Bacillaceae RepID=YBBH_BACSU Length = 283 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 123/276 (44%), Gaps = 1/276 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 ++ + + +E ++ +++L + + + +++ S+A ++++ K LG GF Sbjct: 6 LAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGF 65 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 ++L+ + ++ ++ E + K ++ I + +++ E+ RA Sbjct: 66 QDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVS 125 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 +A G G S + D Q K+LRI + A+ D H++ + + D+V ++ Sbjct: 126 LLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAIS 185 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASARI 255 SG T ++ +AK+ G I +T + ++ LAD + + + E + S+R+ Sbjct: 186 FSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAATSSRL 245 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 QL ++D F+ +A E + KT A + Sbjct: 246 AQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMR 281 >UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XGH5_VIBHA Length = 296 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 115/275 (41%), Positives = 172/275 (62%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + P +RM+ +T E I E LKP + + +IK+VAE L VS A+IVKVSK LGFSG Sbjct: 20 VIPNIRMRMPSLTRTEQSIAENFLKPHFMQKSTSIKEVAERLGVSTALIVKVSKKLGFSG 79 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F+ L+ AL + +L D++ + +V KV ++ + E + V+ + + AA Sbjct: 80 FKQLKDALNAHHHSDSYAPSEQLQPDDSCEQIVTKVLQNSINALTEILNFVDANMVSAAA 139 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 AR +LY AGGSN IC D QHK LR G+R D H+M+MSAS+L E DVVLVV Sbjct: 140 EAIINARNIELYAAGGSNIICEDFQHKLLRFGIRASVPRDRHLMLMSASVLSEKDVVLVV 199 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSG+T D+ AV LAK++GA II IT+++H+ +++L+DY + +PA PLLG+N AR+ Sbjct: 200 SHSGQTVDLMDAVRLAKQSGATIISITNNFHAELSQLSDYPLYAPASPEPLLGKNGIARL 259 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++L ++D+ + ++A +QA N++KT V Sbjct: 260 VKLAMIDSLYATIASKIPDQAEENLEKTTKAVAIL 294 >UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6A5_9CLOT Length = 282 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 135/279 (48%), Gaps = 6/279 (2%) Query: 12 NGIGLAPYLRMK-QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 G ++ ++++ ++ E+++ E++LK + ++A+ S A +V++ K Sbjct: 2 GGTEMSVLIKLRDYRNLSAAENQVREYILKYPKKVLEYTVYELAKESFTSPATVVRLCKK 61 Query: 71 LGFSGFRNLRSALEDYFSQSEQVL-----PSELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 + GF L+ L + + + + + +++P ++ K+ NI ++TI E + + Sbjct: 62 IDIKGFARLKVLLAEETKYFQDMKLNLLDTTTIEKNDSPHAIIEKITNIAVKTIEETRVL 121 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 VN + + AR +A D YG G S+ + D Q+KF+RIG Y + A Sbjct: 122 VNEKQFMQVARLLQKAVIVDFYGVGASSPVAIDAQYKFMRIGKNVITYQLYDRQYVQAVN 181 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 V +++++SG T ++ + +KNG ++ +T S + + ++ADY + A ET Sbjct: 182 SDASHVGIIISYSGETKEMLKIAGILQKNGTPVVAVTSSGENSLNRIADYNLFVTAKETV 241 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 ++R QL ++D + L+ +++ +Q+T Sbjct: 242 FRSGAMASRTAQLYIIDILYALYCSLDYDESIKKIQQTR 280 >UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ALE3_SEBTE Length = 282 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 134/275 (48%), Gaps = 2/275 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L + ++ T +E+++ ++ K I++++ A+ E I++ K GF Sbjct: 7 NLFNKINSLKKSFTASETKVFNYIEKNPESVVRMNIRELSNAIDTGETTIIRFCKKTGFK 66 Query: 75 GFRNLRSALEDYFSQSEQV--LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G+ + + +L S+ +Q ++ DE + ++N + + + S++N + + Sbjct: 67 GYNDFKISLISSLSKEKQSNKYKIDILADENYNSIAEGIYNNSFNVLKDTLSLINNEILD 126 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + A+ + G G SN D ++KFLRIG ++ D H+ M+AS+ DV+ Sbjct: 127 KCINLINNAKHIEFIGIGHSNLTAQDAKYKFLRIGKSVASHSDPHLFKMAASISDREDVI 186 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++ +G T +V +++ AK GAK I IT++ + I K ADY++ + E L + S Sbjct: 187 IGISQTGETREVIDSLQSAKVRGAKTIAITNNDKTEITKYADYVLLNGFNEELLETGSFS 246 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 RI QL +++ ++ V N ++A T V Sbjct: 247 ERISQLFIIELLYLGVLSKNKDKAMELKDLTIKAV 281 >UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Clostridiales RepID=C2L140_9FIRM Length = 285 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 126/282 (44%), Gaps = 5/282 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 +R T+ E ++ +++L+ + +I D+AE V + + + K + Sbjct: 4 DFLTKIRSAYNQFTKAEKKVADYILQNPDQVLFMSISDLAETCKVGDTSVFRFCKTMNVK 63 Query: 75 GFRNLRSALEDYF----SQSEQVLPSELAF-DEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 G++ + L +S++ ++ D ++ KV T+ +I E S+++ + Sbjct: 64 GYQEFKMTLSLSMRGNGKESKEGDGGNVSLQDNNIAELAGKVLEETIDSIKETHSLLDFN 123 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 ++ A +A++ +G G S +KF RI + +MSA+ ++ G Sbjct: 124 KVTEAMNALSKAKRILFFGVGASMLTAMKAMNKFHRIEPKVYCSEMVSQQLMSAATMERG 183 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV ++ ++SG T D+ +LAK++GA ++ IT S + D ++ A L Sbjct: 184 DVAVIFSYSGATRDIVEIAKLAKESGATVVSITRFQKSELTDYTDILLLCGANVGSLQKG 243 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + SA I QL L+D + + + E N ++KT + + Sbjct: 244 STSAEISQLFLVDIMYTEYYRRHYEYCNQILEKTTVAIKDRN 285 >UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3D9_THELT Length = 276 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 9/276 (3%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ Q+ T+ E+ + ++++ + +I ++ + L + + +V+ + LGFS Sbjct: 4 DVQTIIKANQKQFTKKENELAQFVIDHPDEVIHMSITEIVDELRIGQGTVVRFCQKLGFS 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV--NVDEIH 132 GF + AL + E+ E +D++ V ++ I E ++ N ++ Sbjct: 64 GFHPFKIALAKSLGRQEEA-------SEGSKDMLAMVKEDHIKAIEETSKLLKLNEKVVY 116 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + A R+ L G G S D +KF+RIGV + D H MS S E D V Sbjct: 117 QCAEKISNCRRLYLLGVGASGVTALDAYYKFMRIGVDVKYMLDPHFQAMSLSGCNEKDCV 176 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + + SG T+ V ++AK+N A +I +T SP+ AD+++ + E P Sbjct: 177 VAFSQSGSTAVVVDMAQIAKQNKACVIAVTGYNKSPLTFYADFVLLTAVRENPFQSGAIR 236 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 ++I QL +L+ F L ++A N+ +T V+ Sbjct: 237 SKIAQLHVLEVLFEQTKLLLADKAKQNVDRTARSVE 272 >UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZR0_ERYRH Length = 280 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 137/279 (49%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ T+ E RI E++L+ + + + A+ + S A IV+ SK +G+ Sbjct: 1 MSCIYRIKENMHTYTDTEKRIAEYILENKDEVVNFSSQHFAKEINSSAAAIVRFSKKIGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +GF +L+ L S+ EQ + ++ + +V K RT ++N++ + Sbjct: 61 NGFTHLKVELARDHSEEEQSFDKLIKEEDTIETMVRKSHYSNHRTFDNTYKLLNLEVLDA 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + AR+ L G GGS +C D+ HKF+RI + D H+ M S + + E DV + Sbjct: 121 SIAAISNARRIYLLGIGGSGIVCQDLYHKFVRIDADVVYFDDFHLEMSSLTHITENDVTI 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG+T ++ A +LA+ GA I IT + +AK +D++I P E+ + + ++ Sbjct: 181 ALSYSGQTREIIMAQKLAQDKGATTIAITQVGRNELAKNSDFVINIPKEESEVRLGSIAS 240 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 R L + D ++ VA+ NIE+ + T + Sbjct: 241 RFSMLAISDLLYLGVAKNNIEETRRKIVNTRDTIKSIRN 279 >UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=Q2G836_NOVAD Length = 296 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 140/275 (50%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R M++ ++I ++++ +I D+A + SE ++ + +G GF Sbjct: 21 LTRIRSALPQMSKTAAKIAAYVVEHPADVVGMSITDLAALVDASEGSVINFCRSIGLGGF 80 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 ++L+ +L Q + +L +++ + V KVF+ ++ + + S+++ + A Sbjct: 81 QHLKLSLAQEIVQPVHFIHEDLEREDSTETVCRKVFHSGIQALRDSLSVLDPKAMAAAVD 140 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 AR+ ++YG G S I D ++ LRIG+ + D+H+ +SAS + VL ++ Sbjct: 141 IIRAARRVEIYGIGSSAPIAEDAHYRLLRIGLDARVVIDSHVQAISASRCDKDVAVLTIS 200 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 HSG T++ AA LA + GA+ I IT+ SPI AD ++ + A ET ++RI Sbjct: 201 HSGSTNETVAATRLAHEAGARTIVITNFGRSPIQAYADVVLFTMARETRFRTEAMTSRIA 260 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 QL ++DA ++A + +++ +++T ++ Sbjct: 261 QLCVIDALIAALALADYDRSTDVLKQTFDVLSIKR 295 >UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XRD4_9DEIN Length = 264 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 128/261 (49%), Gaps = 2/261 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT RI +++L + + +VA+A SEA +V+ + LGF GF++ + AL Sbjct: 1 MTPALERIAQYVLHNADQVIYQTVIEVADAAGSSEASVVRFCRDLGFQGFQDFKLALASD 60 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 S +LP + + Q + V+N + + E + ++NVD + +AR+ D Sbjct: 61 LVTSPVILPKQEKPT-SAQSTADYVYNTARQVLDETRRLMNVDLLEEVVERILKARRIDF 119 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 YG G + D K R+G AYPD H +SA+ L D+ ++ SG + D Sbjct: 120 YGVGNAGTTAQDFAQKLQRLGCAAIAYPDPHSAAVSAATLGPKDLAFGISVSGSSIDTVK 179 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 A+E AK GA + +T SPI + AD ++ + APE+PL + A+I QL LLD F Sbjct: 180 ALEQAKLAGAYTVAVTRGARSPITRFADAVLLTSAPESPLTRGSMGAKISQLMLLDFLFT 239 Query: 267 SVAQLNIEQANINMQKTGAIV 287 A + + + KT A V Sbjct: 240 RTALRHP-KGAELLSKTAAAV 259 >UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=Firmicutes RepID=A6LVH8_CLOB8 Length = 282 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 142/275 (51%), Gaps = 1/275 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ G++ E I +++L+ +I +++ L V+++ + + +K LG+ Sbjct: 3 VSVRLKIKSLYNGLSAKEQNIADYILENPISVAHNSISYLSDELNVADSTLFQFAKKLGY 62 Query: 74 SGFRNLRSA-LEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 SGF+ + A L + + S + ++ D+ + KVF+ ++T+ + I+ +D++ Sbjct: 63 SGFKEFKMAILIEENNFSTTSIHEKIEIDDNELTMAQKVFDSNIKTLTNTKKILGLDDLK 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +AA + +G GGS + D HKFLR + D HI +M ASLL D Sbjct: 123 KAAEIISNSNLLYFFGVGGSGILAEDAYHKFLRSPAHVRHSTDYHIQLMEASLLTPQDCA 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++H+G++ + E+ K+ GAK+I IT SP+AK+ D + S + E S Sbjct: 183 ICISHTGKSKETIRIAEIVKEAGAKVIVITSHASSPLAKIGDVVFISISEEIEFHSEALS 242 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +RI QL++LD+ +V + +N E++ + K + Sbjct: 243 SRISQLSILDSLYVILMFMNKEKSKEALSKVRRTI 277 >UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789683 Length = 289 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 136/277 (49%), Gaps = 2/277 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + +T+ E ++ +++ + + D++E V E +++ + L Sbjct: 9 NQSNTLLMISSIYSSLTKTEKKVADYVKGFPEETVLATVTDLSEKAGVGETSVIRFCRKL 68 Query: 72 GFSGFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 GF GF + ++ + V+ + + + V K+ + +VN D Sbjct: 69 GFRGFHEFKLSVAQDLVDRPPSVVDTSIDEQDDLMTVARKLTMQHEILLKNTLDLVNADN 128 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + A A + +YG G S D+ ++ +R+G+ +A+ D+HI+ MSASL+++GD Sbjct: 129 LRMAVDKLLAANKVYVYGVGSSGITALDLHYQLMRLGLNVEAHRDSHIIAMSASLVKKGD 188 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 +V ++ SG T D+ AV+ AKKNGA +IC+T SPIA AD ++ + E P G Sbjct: 189 LVFAISTSGSTRDLVDAVKEAKKNGADVICLTGHLRSPIATYADTVLLVSSREMPTEGGA 248 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + + +Q +L+ ++ + E A+ +++KT + V Sbjct: 249 LATKFMQTYMLNIL-TTLLTMKKEDASESLKKTASSV 284 >UniRef50_Q184N2 Putative phosphosugar-binding transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q184N2_CLOD6 Length = 283 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 144/279 (51%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L+ E +TE + +I +++L ++ ++A S A IV+ S+ +G+ Sbjct: 1 MSCILKLKQIYEDLTEVDKKIADYILNNTEAISKLSVSELASNSKTSTASIVRFSRKMGY 60 Query: 74 SGFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 SGF +L+ + + + + +D V+NK+ N + TI + + + D I Sbjct: 61 SGFGDLKIEIAKDLMGKENEYTYVDENYDCNIDSVINKITNKNIETINQTRLLNEKDIIK 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A +A+ ++G GGS + D+Q K LRI + D+H +M +S + + D+ Sbjct: 121 EAVEQIIKAKNVYIFGVGGSALVALDLQMKLLRINKQAFTSLDSHTQLMVSSNVDKEDIA 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG + +V ++E AK G K+ICIT + ++K++D + P E L S Sbjct: 181 IAISYSGESKEVIKSIENAKLKGCKVICITKYSDNHLSKISDLKLVVPNIEKRLREGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +RI LTL+D ++S+ Q N+ +A +Q+T I+D+ + Sbjct: 241 SRIAMLTLIDIIYISIIQENLNEAEQKLQETKRILDYLN 279 >UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C2G7_BEUC1 Length = 285 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 6/284 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + + + R+ E +L+ + I ++A SE IV+ + LG Sbjct: 1 MSIQSSIQSRLDQFAPSMRRVAEAILERPQVVLEKTISELASQCETSETTIVRFCRTLGL 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPS------ELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 +G+ LR L + ++ ++ + K+ I E + ++ Sbjct: 61 TGYVQLRLELATEIGRENAQRGELGDHGADILAEDGLAAMAAKIAFTDTLGIEETLASLD 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 ++ + R A + YG G S + AD+Q K RIG + D H + +A+L Sbjct: 121 IEHLERVVDAIDTAGRSVTYGVGSSGSSAADLQRKLFRIGRVAFTFDDPHDAVTAAALSS 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 GDV + +HSG T + A + A K+GA+ + +T+S S +A+ AD ++ + ET Sbjct: 181 PGDVAVAFSHSGATREALAFLATAGKHGARTVAVTNSAESALARAADIVLVTSVRETQFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++RI QL ++D FV VAQ +Q ++ T A Sbjct: 241 SGAMASRIAQLMIVDCIFVGVAQRRYDQTVDALKSTYAAAQELR 284 >UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator n=2 Tax=Enterococcus casseliflavus RepID=C9AZQ1_ENTCA Length = 283 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 70/276 (25%), Positives = 144/276 (52%), Gaps = 1/276 (0%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + + ++ + ++ E I +++L+ + +I D++ L ++++ + +K LG Sbjct: 2 TVSIRLQIKTLYKDLSLKEQAIADYILENPSKVSHSSISDLSNELGIADSTFFQFTKKLG 61 Query: 73 FSGFRNLRSA-LEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 ++GF++ + A L S + + + + KVF+ + T+ + ++++ +++ Sbjct: 62 YNGFKDFKMAMLMQENDFSAISIHENIQKSDNELTMAQKVFDSNMTTLTDTKNLLKEEDL 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 AA Q+++ +G GGS + D HKFLR + D HI +M ASLL D Sbjct: 122 KLAAAMINQSKRLFFFGVGGSEIVATDAYHKFLRSPITVFHSSDYHIQLMEASLLTPDDC 181 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + ++H+G++ + ++AK NGAKII IT SP+AKL D + S + ET Sbjct: 182 GIFISHTGKSRETIELAQVAKNNGAKIIVITSHAASPLAKLGDVVFISISEETEFRSEAL 241 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++RI QL+++D+ +V + +N ++A ++ K + Sbjct: 242 ASRIAQLSIMDSLYVILMFINRDKAQQSIAKIRRSI 277 >UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W838_ATOPD Length = 304 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 4/270 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ L ++ + E I++++L +I +A S + +V++ K LG Sbjct: 3 GVRLRLEEYRKNASSAERDIIDYILSDPEAVVGQSIHKLAAQTYTSASTVVRLCKKLGCG 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELA---FDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ + AL + S + + + ++ KV + ++ +++ + Sbjct: 63 GYKEFQQALIYELAVSNKSNDIAVGGVIAGDTTDVIIEKVTAKNISSLELTMQLLDAQVV 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 QA L+G G S + D+Q K +R+ + C D H ++ A + D+ Sbjct: 123 DSVVSLMMQAHSICLFGMGASLLVARDLQLKLMRLNINCNLSDDYHSQLLYAKNMSREDL 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSY-HSPIAKLADYIICSPAPETPLLGRN 250 +VV++SG T + +AK NGAK+I IT S + +DY++ E + Sbjct: 183 AIVVSYSGLTREAIECAWIAKANGAKVISITRGGIDSELIHRSDYVLGVAETEHIMRSGA 242 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINM 280 S+RI QL ++DA F + N E++ Sbjct: 243 MSSRIAQLNVVDALFAAYVNRNYEKSVKRF 272 >UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oeni RepID=Q04DU1_OENOB Length = 282 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 134/277 (48%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R E + E RI +++L + I+ +++ + +S A I + ++ LG+ Sbjct: 3 NVTETIRSYYEKLHPGEKRIADYILSHQDSVMDATIQSLSDKIGISTASISRFTRHLGYP 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 FR+ AL S +E+ + + +V K+F+ + + + +N+ ++ R Sbjct: 63 NFRDFLIALSASKKNSSSDFFTEIKQSDQSEQIVKKLFSAGIAALTATAANINMKDLDRV 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + + + +G GGS+ + + HKFLR + ++PD I +M A+ L D+ +V Sbjct: 123 VDWLVSSNKIGFFGIGGSSIVAFNAYHKFLRTNLNIVSHPDYDIQIMQAAHLTSEDLGIV 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSGR D ++NG+KI+ IT SPIAK AD ++ S + E + S+ Sbjct: 183 ISHSGRNQDTLLVENKLRENGSKIVAITAFPESPIAKNADIVLNSYSEEVNFRQESMSSL 242 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + Q+T++D F V EQ + + +++ Sbjct: 243 VAQITIIDTLFTLVGHRLNEQTDQVINSMRRVIEQTR 279 >UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMQ5_CLOPH Length = 285 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 5/278 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + R + + +E ++ + L + I +AE VS+ ++ K +GF Sbjct: 2 TNIEIKTRSIMDSLNNSERKVATYFLNNIENIFSIPIARLAEESGVSQVTWIRFCKAIGF 61 Query: 74 SGFRNLRSALEDYFSQS-----EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G ++L+ +L + S + S++ + + N + N TL+ + + +++ Sbjct: 62 DGLKDLKKSLFMELNSSTSEGIDTSDFSDIKKHSTLEQMCNTIRNTTLQAVEDTIKLIDY 121 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 D + + +A L+G G S + D K LRI D H ++ + + Sbjct: 122 DTLKKVVSILSKASCIKLFGVGASALVADDFCKKLLRINKNVNFSYDMHTQLVYGANARP 181 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV ++ ++SG T ++ ++LAKK+ I IT SP+ ADY I APE Sbjct: 182 EDVAVIFSYSGTTKEMLEIMDLAKKSNCPTIVITKYTKSPLVASADYSIYISAPEINYRS 241 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 S+RI QLT++D F S+A N ++K+ + Sbjct: 242 GAMSSRIAQLTIVDLLFTSLANKNYTSVEKYLEKSSEV 279 >UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator n=24 Tax=Neisseria RepID=A9M040_NEIM0 Length = 282 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 72/273 (26%), Positives = 136/273 (49%), Gaps = 2/273 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + ++ E ++ E L A+ ++AE +VS+ +++ + LG+ G Sbjct: 1 MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKG 60 Query: 76 FRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 + AL + + EL D+ VV KV +++ + + E+ A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ + YG G S + D QHKF R G+ AY D H +M+AS+L + DV++ Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVA 180 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++G + ++ AV +AK+NGA +I +T + SP+A+LAD ++ E L +R Sbjct: 181 ISNTGSSIELLDAVSIAKENGASVIALTRN-DSPLAQLADCVLSVATQENAELYTPMVSR 239 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +LQL ++D + +A + A++ +QK+ + Sbjct: 240 LLQLAVIDILAIGLALRLGDAASLQLQKSKKSI 272 >UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=Gammaproteobacteria RepID=B4EZY5_PROMH Length = 295 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 130/276 (47%), Gaps = 4/276 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + L + +T RI +++L +I +++A EA +V+ + LG+ G Sbjct: 14 ILDTLGAMKNSLTRVSQRIADYILFHPTEVTQLSIAQLSQATKAGEATVVRFCRTLGYKG 73 Query: 76 FRNLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F++ + L + S+ +L +E++ + + K+ + E +++++ ++ Sbjct: 74 FQDFKMDLAIEMATSDNDESPILDAEVSHQDDIHTIGLKLQATINNVLSETLNLLDMQQV 133 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A A + G G S D+++K +RIG R A + H M M ASLL+ GDV Sbjct: 134 QGAVNALLSANYVFICGVGSSGITAEDLKNKLMRIGYRVDAVTNNHFMYMQASLLKSGDV 193 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + ++HSG + + A++LAK+ GA I +TH+ S I + AD+ + + + L G + Sbjct: 194 AIGISHSGNSLETVHALKLAKEAGASTIALTHNLGSQIMEYADHHLINGNRQGKLQGDSI 253 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + QL +LD + + Q E +T + Sbjct: 254 GTKTAQLFVLDLLYTLLVQAKPETVKEQKLRTLNAL 289 >UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseriaceae RepID=D0W145_NEICI Length = 315 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 2/272 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + ++ E ++ E L A+ ++AE +VS+ +++ + LG+ G Sbjct: 1 MLSKISESLADLSGAERKVAECALAKPKWFVHAAVAEIAEHSSVSQPTVIRFCRSLGYKG 60 Query: 76 FRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 + AL + + EL D+ VV KV +++ + + E+ A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMSSVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ + YG G S + D QHKF R G+ AY D H +M+AS+L DV++ Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSSEDVLIA 180 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++G + ++ AV +AK+NGA II +T + SP+A++AD ++ E L +R Sbjct: 181 ISNTGSSIELLDAVSIAKENGASIIALTRN-ESPLAQMADCVLSIATQENAELYTPMVSR 239 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 +LQL ++D + +A + A++ +QK+ Sbjct: 240 LLQLAVIDILAIGLALRLGDAASLQLQKSKKA 271 >UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=Burkholderiaceae RepID=Q3JNN8_BURP1 Length = 339 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 136/280 (48%), Gaps = 1/280 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P + + + +E ++ +++L ++ ++A S+ I + + LG S Sbjct: 7 TMLPRIETIRAQLRPSERKLADFVLAAPREVLDLSMTELAARAGASQPTIARFCQALGCS 66 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR + L + + ++ DE ++ KVF+ T+ ++E ++ ++ + A Sbjct: 67 GFREFKIRLAQSVAPGVASVYRDVEPDERAPGIIGKVFDRTIGALIEVRNSLSATSVAEA 126 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +A + + YGAGGS D+QHKF R+GV AY D H MSA+LL DVV+ Sbjct: 127 IELLTRASRIEFYGAGGSGIAAQDIQHKFFRLGVPSVAYSDPHTFSMSAALLGANDVVVA 186 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++GRT D+ A A GAK+I ITHS HSP+A+L+ + S E + ++R Sbjct: 187 ISNTGRTRDIVDAARAALACGAKVISITHS-HSPLAQLSTVSLASNVAEETDVFSPMTSR 245 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 + L + D V VA + + + + GA Sbjct: 246 MSHLAIGDILAVGVALRRGPELVDRLGRAKEAITRRRIGA 285 >UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium RepID=C3WE65_FUSMR Length = 284 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 5/265 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ + + ++ E ++ E++L+ + ++A S+A +V+ +K LGF Sbjct: 1 MGVLIKINSMLDNISSTEKKVGEYILENPDKIKDLNTYELANITKTSQATVVRFAKRLGF 60 Query: 74 SGFRNLRSALEDYFSQSE-----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GF + AL + ++ E+ D++ + + K+ N + I + + + Sbjct: 61 KGFPAFKLALSQDLGNRKAESHVNIMHEEIKPDDSFEIIGRKISNENITAISDTYEVTDF 120 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 E+ +A +AR+ L G G S + D +K L +G D H+ + S + E Sbjct: 121 TELEKAVVMLSKARKIMLAGIGFSGIVAKDFYYKLLELGKHAMIEVDTHMQLSCLSTMGE 180 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV+ V++HSG+T ++ V++AK G +I +T +PI LAD + + + Sbjct: 181 DDVLFVISHSGKTMEMYNVVKVAKSKGITVIAMTSIAPNPIKDLADIRLNTVEMNSNFRS 240 Query: 249 RNASARILQLTLLDAFFVSVAQLNI 273 S RI QLT++D +V + N Sbjct: 241 TALSPRISQLTVIDMLYVKMMLENK 265 >UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N1V0_9FIRM Length = 277 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 124/270 (45%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 ++ Q T E I +++L+ + + + E S A I++ SK LG++GF Sbjct: 5 AKIKEAQSSYTSTEKVIAKYILENAADVLKCSAQSLGEKTGTSAAAIIRFSKKLGYNGFS 64 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 L+ +L E+ + + ++ + +K + + T+++ +++ +++ A + Sbjct: 65 ELKMSLAQSKRAPEEKIDFIIDENDDIVTLADKCCRLNMNTVLKTYQLIDTNQLDNAIKK 124 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 A L+G GGS + DV+ K RIG + D H+ + + + + D L +++ Sbjct: 125 LIAANTIYLFGVGGSAIVAQDVEQKLTRIGKKVIYNKDLHVQLTFSESMNKEDAALFISY 184 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T + ++ K II IT +P++KL+D I+ P E + S+RI Sbjct: 185 SGTTKGLVEIAKMIKNKNVPIISITQFKPNPLSKLSDIILQVPNEEKEIRMGAISSRISS 244 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L + D + V + ++ + +T IV Sbjct: 245 LVMTDLLYYGVFKNDLTGNKDKLIETKRIV 274 >UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n=4 Tax=Firmicutes RepID=A8FIY5_BACP2 Length = 286 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 132/274 (48%), Gaps = 1/274 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++R ++ + +I ++L+ +I +A SE I + + +G+ Sbjct: 8 NIFSHIRTTFHSLSPTQKKIANYILENPQKVVLHSISALASECNTSETTIFRFLRKIGYE 67 Query: 75 GFRNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 ++ R + + + Q + E+ ++ D+ +KV +T +I + + IV + + Sbjct: 68 SYQVFRVHVAQDIATNTPQSIYGEIEASDSVADIKHKVIELTTNSIQDMKHIVEDHAVTQ 127 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 QA + +GAG S+ I D HKFL++G D H+M M A+ E D ++ Sbjct: 128 FIEQMKQAHKTVFFGAGASSFIAGDAYHKFLQLGFDVSLCSDPHMMNMIATHATEHDFIV 187 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++HSG + ++ AV+ AK+ GAKI IT S +AK +D+ + S + ET + + Sbjct: 188 AISHSGESREILDAVQFAKEKGAKIASITSYPKSELAKRSDFHLLSSSRETTYRSDSMIS 247 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 RI QL ++D +V+ A N++++ V Sbjct: 248 RINQLVIIDVLYVAAVLELGSNAIENVKRSRLAV 281 >UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDH7_9ACTO Length = 342 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 8/288 (2%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + +R G+ +E RI E +L + + + ++A A S +V+ + +G Sbjct: 9 PRTVLVRVRAALPGLRPSERRIAEAILDDPHATAGLTVAELAAACDTSTTTVVRFYQRIG 68 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELA-------FDEAPQDVVNKVFNITLRTIMEGQSI 125 + +++LR L + EQ+ + L D+ D++ KV +I + I Sbjct: 69 YGRYKDLRLDLTRE-ATREQLETANLPAASGDIDRDDTIDDIIAKVAANETLSIADTAEI 127 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 ++ D + RA AR+ D +G G S + D+Q K RIG ++ D +A Sbjct: 128 LDRDALARAVDCVLNARRVDSFGVGASGFVGLDLQQKLTRIGRTALSWLDTDAAWSAAVT 187 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 L E V + ++H+G T+ + +A GA I IT+ ++ +A+ AD ++ + A ET Sbjct: 188 LDEQCVAIAISHTGTTAATVEFLAMAAAEGATTIAITNHDNTALAETADVVLTTAARETR 247 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 +RI QL ++D F VA+ + + + ++KT A V G Sbjct: 248 FRSGALGSRIAQLMVVDCLFTGVARASYDASMSALRKTYAAVHRKGRG 295 >UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=Clostridium RepID=A6LUR0_CLOB8 Length = 281 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 136/281 (48%), Gaps = 4/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + Y++ + T+ E I ++L++ + + +D+AEA S +V+ +K +GF Sbjct: 1 MNVLQYIKQNYDSFTDREKLIADYLIETKERIISMSARDIAEATKTSAPTVVRFAKKIGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAP---QDVVNKVFNITLRTIMEGQSIVNVDE 130 + L+ L S+ E+ + + + ++++ + + + S+++ + Sbjct: 61 NTLNELKLKLSINISKEEEAGAIQFQYLDNDLGTKNIIYGIKQSVDSIMEQTVSLLDEEC 120 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + +A A+ ++ G S + D +K R+ RC D H+ + S+ LL+EGD Sbjct: 121 LDKAIELLISAKNIYIFSVGVSGLVGQDFYYKLSRMNKRCICNTDTHLQITSSVLLEEGD 180 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITH-SYHSPIAKLADYIICSPAPETPLLGR 249 V L +++SG T +V V+ A+ +I IT S ++ IA ++D +I PA E + Sbjct: 181 VALAISYSGETKEVIKCVKNARNRKVPVIAITKASVNNTIADISDIVIRIPAVEKSIREG 240 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 S+RI QL ++D ++ + + NI++ + T V Sbjct: 241 AISSRISQLAIIDMLYIGMIRNNIKEVEEKLISTRKAVKEL 281 >UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L9A2_9FIRM Length = 336 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 117/263 (44%), Gaps = 4/263 (1%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + + + +T + ++ +++ + +I +AE VSEA I + + LG Sbjct: 53 SANILDLITEQYPTLTRSGKKLADYIFANTTETQYLSISALAENSGVSEATITRFCRKLG 112 Query: 73 FSGFRNLRSALEDYFSQSE----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 SG+ + + A+ ++ PS + ++ D+ K+ + + ++ E +++ Sbjct: 113 LSGYNDFKLAIAKSDHVTDMGEPSGSPSTITSQDSLPDIFQKLLSANILSLTETFDLLDE 172 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 EI RA Y A G G S+ + + +F R D+H+ M+S +L Sbjct: 173 KEISRAVDLLYGAHHVYCLGNGSSSVMAMEAWARFSTASTRFIHIADSHMQMLSIALATP 232 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV+L ++SG T D++ + +A K +I +TH S A AD + E+PL Sbjct: 233 QDVILFFSYSGATRDMEDIMNIAHKRKIPVILVTHFPKSQAAAFADVTLLCGYNESPLQS 292 Query: 249 RNASARILQLTLLDAFFVSVAQL 271 + +AR+ Q+ ++D F Sbjct: 293 GSIAARMGQMLIIDCLFHGFCLK 315 >UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I531_9CLOT Length = 284 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 72/273 (26%), Positives = 144/273 (52%), Gaps = 5/273 (1%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 + +T+ E++I +++ + N S + ++A V EA + + + LGF F + + Sbjct: 9 RSELTKAENKICDYIEEYMNSSIYMTVTEIANNCGVGEATVTRFCRKLGFRSFLEFKMTM 68 Query: 84 EDYFSQS----EQVLPSEL-AFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 F S E ++ SE+ + +++ + V K + I + ++ E ++ I + Sbjct: 69 AQEFKNSGYDNEDIIESEVVSENDSLGEFVKKFYEINVNSLEETLKKIDYSMIEEISDIL 128 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 +A++ G G S I D +KF++IG+ C Y D+H ++M ASL++EGDV+ ++++S Sbjct: 129 VKAKRISFTGVGHSGIIAEDAYYKFMKIGLICNCYRDSHTLVMMASLMKEGDVLFIISNS 188 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G T ++ A E+A++N K+I IT + S +A+++DY++ E + + RI Q Sbjct: 189 GNTEEINIAAEIARENNVKVISITENLLSKLARVSDYVLNYTDQEIKIDMESFGIRISQN 248 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L+D +V + N E A ++ KT ++ + Sbjct: 249 FLIDLICTNVIRKNKEIAVVSKSKTEKAIEKLN 281 >UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUK3_9FIRM Length = 280 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 71/276 (25%), Positives = 121/276 (43%), Gaps = 2/276 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ E MT E I ++L+ + ++ A S A + +K +G+ Sbjct: 1 MSCITKIKSALESMTATEQMIGRYILEHRHEVLEMNTLELGWASGTSGAAWTRFAKKMGY 60 Query: 74 SGFRNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G L+ L + E + L + +++K I + + +++ + Sbjct: 61 KGLPALKLDLAQDRTDEEMPEVDLFLDPRDTLGALLHKTQTILEQNLRRTYELIDEAVLA 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A A + L G GGS +C D+ HK RI D H++M + GDVV Sbjct: 121 QAIDMMASAHRLFLCGIGGSGIVCMDLVHKLTRINRPVTYDRDTHVLMAQMAHCMPGDVV 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICIT-HSYHSPIAKLADYIICSPAPETPLLGRNA 251 LVV++SG T V LAK+ GAKII IT H+ +P+A LAD + P E + + Sbjct: 181 LVVSYSGNTHTVNQMAYLAKEQGAKIIAITGHNLKAPLASLADVCLFIPRDEKEIRLGSV 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++R L + D + VAQ ++ KT ++ Sbjct: 241 TSRDGSLIVTDLLYYGVAQRQFHATKEHLVKTRKMI 276 >UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus suis RepID=A4VXR0_STRSY Length = 275 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 132/272 (48%), Gaps = 2/272 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 L E +T E+++++++ + + I +A+ VS A I ++SK +G+S F L Sbjct: 6 LNHSIENLTPTENKLLDYIEENIHRIETMNIYQLADNAGVSTATISRISKKMGYSNFNKL 65 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + + S+ + +L + ++ D+ K+ + + + S +N++E+ A + Sbjct: 66 KIEIAK--SKYDDLLNAHFTPSDSIDDISTKLIHSITISNQQTVSFLNLEELEAAVKLLQ 123 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 A + L+G G S +C+D +K RIG C D HI M + + GD+ + +++SG Sbjct: 124 SASRIYLFGVGASGIVCSDFYYKLSRIGKTCIFAQDTHIQMANIATAGNGDLAIGISYSG 183 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLT 259 T +V + AK+NG I IT + + +A LAD P E L ++R L Sbjct: 184 MTKEVVEPLRFAKENGVSTITITGTGKNQLADLADITFRIPRHEHELRVGAITSRSNSLF 243 Query: 260 LLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L D ++++ Q + ++ +++T + + Sbjct: 244 LTDLLYLALIQDHKQEITAILEQTKHLTEVIK 275 >UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=Gammaproteobacteria RepID=A0KFB6_AERHH Length = 286 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 8/283 (2%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 + + ++ +E +I +++L + +++A+ VS++ IVK ++ +GF GF Sbjct: 4 LSKISNIRSQLSPSELKIADYILACPEQVTHFSSQELAQQADVSQSSIVKFTQKIGFKGF 63 Query: 77 RNLRSALEDYFSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 + A+ + + + L + + D+ + + K+ + +I+E ++ Sbjct: 64 TAFKLAVSEDLGRKHAIKTDNVGDLYNGIGRDDDLETMAKKLAQEKINSIVETTQALDNA 123 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + R QA + L G GGS D+ +K L+IGV D+H+ + A L G Sbjct: 124 TLARVLDVINQAGRVQLVGIGGSALTAKDLWYKLLKIGVTTLFAQDSHVQISIAQTLGPG 183 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV LVV++SG + DV AA ELAK+NGA +I +T ++P+ ++AD ++ + A E L Sbjct: 184 DVQLVVSYSGASRDVLAAAELAKRNGATLIAVTSFRNTPLRQMADMVLDTVADENELRIS 243 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + S+R Q T+ D F+ + Q ++A + T +D + Sbjct: 244 SISSRTAQNTITDILFLGLVQRR-DEAWALIDGTRGAIDRLNK 285 >UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Gammaproteobacteria RepID=B8KWX3_9GAMM Length = 337 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 3/294 (1%) Query: 2 SQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSE 61 S+ S++ I L + G+ ++E ++ + +L + + +I +A VSE Sbjct: 39 KNSDGQSSMAYDINLLEDINQSLPGLNKSEVKVAQAILSDPDAATRMSIASLASRAGVSE 98 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 + + K G SGF + + L + + + F + K+F+ + ++ Sbjct: 99 PSVNRFCKRFGASGFPDFKLRLATSMVSGVRYISRAVEFSDDIDTYPGKLFDNAISALVA 158 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 + + +I RA F QAR+ +G G S A+ D +HKF R V + D + M Sbjct: 159 AKEQLPTGDIARAVDFLAQARRIHFFGLGTSAAVTKDAEHKFFRFNVPVTNHQDPLMQRM 218 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 A+ GDV +++H+GRT + ELA++ A ++ +T SP+A+ +D I Sbjct: 219 LAAAGSVGDVFFIISHTGRTRALVEVAELARQTEATVVSLTA-PQSPLAQESDCAITLTI 277 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV--DFFSPG 293 E ++R++QL ++D V E+ ++ + + PG Sbjct: 278 GENTEEYLPMTSRLVQLAVIDVLATGVTLRRGERFLPHLARIKDSLKATRLKPG 331 >UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JBJ8_FRASC Length = 299 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 128/281 (45%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 P G +LR +T + +I + +L + D+A+ S A +V+ + Sbjct: 18 PGPGGTIAHLRACLPTLTPSGRKIGQLILDDPREIVHLTVTDLADRTGTSVATVVRFCQD 77 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 LG GF +L+ L E+ L + ++P ++ K+ + T + E V+ Sbjct: 78 LGLKGFADLKIRLAGEAIPPERGLHEAVTHADSPATILEKILHSTESALSETTRTVDRAA 137 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 RA A + L GAG S + D ++F +G+ +A DAH+ ++A LL Sbjct: 138 FTRAVDALQCADRVLLIGAGTSAPLAQDAAYRFRTLGLLAEAPADAHVQHVAARLLPPAS 197 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 L ++H+G+T + A A+ GA I +T + SP+ +LAD + + + ET Sbjct: 198 ACLAISHTGQTRETLAGAAAARAAGATTIALTSFFRSPLTRLADVALVAGSSETNYRVEA 257 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 S+RI+ T+LDA FV+V ++A + T ++ Sbjct: 258 MSSRIIHATVLDALFVAVHLAQPDRAQKAQELTAEVLTEHR 298 >UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPL3_9FUSO Length = 285 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 135/273 (49%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ +++ E I +++LK N S I D+AE + V + I +K LGF Sbjct: 5 NMKFTIKTIYNDLSKKEKLIADYILKNINKSTNLTIADLAENIGVVNSTIFSFTKKLGFK 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR R +L S + +++ +++ ++ KVFN ++++ + + I A Sbjct: 65 GFREFRDSLLRDQFNSNINVHEKISKNDSITSIIEKVFNSNIKSLEDTKKIAEKKSFSTA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + Q +G GGS+ I D HKFLR ++C+ D H+ +M ASLL + D + Sbjct: 125 LKILTQVDIVHFFGVGGSSVIAHDAYHKFLRSPLKCRFDSDFHLQLMQASLLTKNDCAFI 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG T + ++AK+ AKII +T S +AK AD S A E S+R Sbjct: 185 ISHSGMTKESIEIADIAKERKAKIIVLTSYPLSILAKKADITFISTAEEIEYRSEALSSR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 I QL++LD F+ V N + I++ K + Sbjct: 245 IAQLSILDTIFILVMLNNPTKTQISLNKIRTTI 277 >UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 Tax=Vibrio shilonii AK1 RepID=A6D304_9VIBR Length = 289 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 105/279 (37%), Positives = 169/279 (60%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + P +RM +T+ E I E L+P L + +I +VAE L+VS A+IVKVSK L Sbjct: 9 NSNQVIPNIRMMMPSLTKTEQSIAENFLQPHFLQKSTSINEVAERLSVSPALIVKVSKKL 68 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GFSGF+ L+ +L L D++ + +V+KV ++ + E + V+V + Sbjct: 69 GFSGFKQLKESLYAQSETQSYAPSERLLPDDSAEKIVSKVLQNSINALTEILNFVDVSMV 128 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 AA +AR +L+ GGS+ IC D QHK LRIG++ D H+M+MSAS++ + DV Sbjct: 129 DAAAEALLKARNIELFAVGGSSIICEDFQHKLLRIGIKSSVPKDRHLMLMSASIMTDQDV 188 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 VLVV+HSG+T D+ AV AK++GA +I IT++YH+ ++ L+D + +PA P+LG+N Sbjct: 189 VLVVSHSGQTVDLMDAVRQAKQSGATVISITNNYHAELSSLSDIPLYAPASPEPVLGKNG 248 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 +AR+++L ++D+ + ++A A ++ KT V+ Sbjct: 249 TARLVKLAMIDSLYATMASKMPSLAEESLSKTIRAVERL 287 >UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n=22 Tax=Gammaproteobacteria RepID=A4TMJ1_YERPP Length = 292 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 68/276 (24%), Positives = 136/276 (49%), Gaps = 4/276 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + L Q +T + RI ++L +I D++ EA I++ + LG+ G Sbjct: 13 ILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKG 72 Query: 76 FRNLRSALEDYFSQ----SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F++ + L + +L +++ + + +K+ + + E ++++++ + Sbjct: 73 FQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESV 132 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + + A + ++G G S D + K +RIG+R A + H M M ASL+ GDV Sbjct: 133 EQVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMNPGDV 192 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + ++HSG +++ A++LAK+ GA + +TH+ S I +LADY++ + + L G + Sbjct: 193 AIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQGDSI 252 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +I QL +LD + + + + QA +KT V Sbjct: 253 GTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAV 288 >UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA31_9ACTN Length = 281 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 4/273 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L+ ++ + E ++E +L +I ++A VS + I ++ K LG Sbjct: 2 VSLLVRLKQYRDNASPAERELIERILDDPESISGLSIHELAAYAFVSPSTITRLCKKLGL 61 Query: 74 SGFRNLRSALEDYFS---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G++ + L + +S +LA + + + KV + ++ + + + + Sbjct: 62 KGYKEFQHLLIYDLALLRESSSSKIEDLAPTDTSRQTIEKVTRDNIDSLRLVEKLNDPET 121 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 AR +L+G G S D+ +K LRIGV C D H ++ AS D Sbjct: 122 YEACVDLMSDARTINLFGMGASLLSARDMHYKLLRIGVSCNLIDDWHGQLLCASNSGPED 181 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSY-HSPIAKLADYIICSPAPETPLLGR 249 + + +++SG T +V V A++ G K+I IT S S +A+ AD ++ + E + Sbjct: 182 LSIAISYSGLTEEVNVCVGRARERGGKVIAITGSAFDSKLARQADEVLLVGSTEPLMRSA 241 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQK 282 ++RI QL ++D F S N + + +++ Sbjct: 242 AMASRIGQLGVIDILFKSFVNRNYARFSEVLEQ 274 >UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=Bacillales RepID=C4KZ09_EXISA Length = 301 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 2/286 (0%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 + + + L + + +E MT E +I +++L L K++A+ VS Sbjct: 8 IKEQQLQEGDDQMESLLTKIDLAKEDMTAVEKKIADYILSHSTLIPNMTTKELAQKTDVS 67 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRT 118 EA IV+ ++++G F+ + AL + +E L + L + P D KV ++ Sbjct: 68 EASIVRFARVVGIDSFKAFKLALVKDLAVTETTLTDFNVLQQKDTPYDSFQKVIHVNKAA 127 Query: 119 IMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHI 178 I ++ E+ A F +A + YG GGS+ D Q+KF ++G PD H Sbjct: 128 IEACAEAMDKRELEHAVDLFARASRVIFYGVGGSSTAAIDAQYKFTKLGYAATTSPDFHY 187 Query: 179 MMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIIC 238 M+ L + DV + ++ SGRT DV V AKK +I IT+ SP+ + AD +C Sbjct: 188 MLSLIPHLGKSDVFVAISTSGRTKDVLELVRFAKKKRVPVIAITNLDKSPLYREADVRLC 247 Query: 239 SPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 +P E+ + ++R+ QLT++D ++ + E + Sbjct: 248 TPNVESDFRIASIASRMTQLTIIDTLYMGLLHRKGEGLIDRYAEAR 293 >UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus lactis RepID=Q02VU4_LACLS Length = 282 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 135/275 (49%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L +R + +++++ I ++L+ + + +I++ A+ VS A I + SK +G Sbjct: 2 SRTLISRIRSYYDNLSKSDQAISDYLIANIDSAAMLSIQEFAQKTQVSTATISRFSKKIG 61 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F+ F+ L+ A+ S + SEL+ + ++++ K FN + ++ ++++ ++ Sbjct: 62 FNSFQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLD 121 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + +A +G GGSNA+ HKFLR+ + C + D H M A+ L D Sbjct: 122 QTMEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDCA 181 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 V++H+G+ D VE+ K G II +T SP+AK AD + S + E + Sbjct: 182 FVISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAVA 241 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + + Q++LLDA F+ + + + + ++ Sbjct: 242 STVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVI 276 >UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YX9_LACSS Length = 280 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 128/278 (46%), Gaps = 1/278 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR + +E +I +++ + + I++ A VS A I + +K+LGF Sbjct: 4 AIDSLLRSYYDNFSEKYKQIADYIFQESQFNQRLTIQEFAANCGVSTATISRFAKILGFD 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 F+ + AL + + + E+ ++ + K+F+ + S++ +++ +A Sbjct: 64 NFQAFKMALLAKEANTSPLFH-EINANDTFTTMAEKIFSSNSNALKATWSLLTEEQLQKA 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +A L+G G S + D HKFLR + D H+ +M A+ L D ++ Sbjct: 123 VALINRAHLLSLFGLGASGIVAQDGYHKFLRTSIPTVFNQDYHLQLMQATKLTNQDCAII 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG+ D + K+ +I IT +S +AKL D + S + ET A Sbjct: 183 ISHSGQNKDALELARILKERQVPLIVITSFGNSSLAKLGDITLLSISEETNYRAEALHAL 242 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 I Q++L+D+ F+ VA N ++ + ++ A +D Sbjct: 243 IAQISLIDSLFMMVAVNNGQETEQSFKEIRAEIDRTRQ 280 >UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Tax=Gammaproteobacteria RepID=HEXR_ECOLI Length = 289 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 126/274 (45%), Gaps = 1/274 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + E ++++E ++ E +L + + +I +A VSE + + + + Sbjct: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF + + L + + + D++ + K+F + T+ + ++ I+R Sbjct: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A QA++ +G G S A+ D +KF R V D + MS +GDVV+ Sbjct: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++H+GRT ++ +LA++N A +I +T +P+A+ A I PE + + Sbjct: 181 LISHTGRTKNLVELAQLARENDAMVIALTS-AGTPLAREATLAITLDVPEDTDIYMPMVS 239 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 R+ QLT++D + N+++ + Sbjct: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEAL 273 >UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=cellular organisms RepID=A9BXM8_DELAS Length = 323 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 5/271 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + + E R+ +L ++++AE VS+ +V+ + +G+ G Sbjct: 43 MLDRITASLPSLAPAEQRVARLVLADPRAFARQPVRELAERAHVSKPTVVRFCRSMGYDG 102 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + + L S+ + + D+ DV+ KV + + ++ ++ + I +AA Sbjct: 103 LADFKLKLAGSVSEGVPFIHRSVDTDDKTSDVMVKVVDNAVAAFLQYRNAASTTAIEQAA 162 Query: 136 RFFYQA----RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + R+ + YGAG S + D QHKF R+GV A D H+ +MSA+LL GD Sbjct: 163 QAIASTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGVTSLATSDGHMQVMSATLLGPGDC 222 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 +++++SGRT D+ A ++A+KNGA I IT S SP+A + + PE Sbjct: 223 AVIISNSGRTRDLMDAADIARKNGATTIAITASG-SPLASACHIHLAADHPEGYDRYSPM 281 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQK 282 +R+L L ++D VA +++ Sbjct: 282 VSRLLHLLVIDVLATCVALRIGPALQPALEQ 312 >UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EB66_BRASB Length = 270 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 127/268 (47%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 + +I E + +I +VAEA VSE IV + +G GF+ L+ L Sbjct: 2 LPELPPKARQIAELIAAQPEPFVHKSITEVAEACDVSEGTIVSFCRRVGVRGFQELKIML 61 Query: 84 EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQ 143 + +++ +L + P V + +F ++ E + +++++ + A R +A++ Sbjct: 62 ARDLIEPVRLIQEDLHRGDDPATVTDHIFAAHAASLQETRRLLSMEALAEATRLLREAQR 121 Query: 144 RDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSD 203 ++YG G S I D+ ++ L++G+ A D+H+ +SA + G + V+HSG T + Sbjct: 122 IEIYGIGSSAPIAQDLSYRLLQLGLAANAIVDSHVQAVSAGMTGPGVATVTVSHSGSTVE 181 Query: 204 VKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 A LA+ GA+ I IT SP+A + ++ + A ET S+R+ QL ++D Sbjct: 182 TVLATRLAQAAGARTIGITRLGKSPLAAHCEVLLYTVANETRYRPEAMSSRVAQLAIIDT 241 Query: 264 FFVSVAQLNIEQANINMQKTGAIVDFFS 291 A + E++ +Q I+ Sbjct: 242 LVSCCALTDTERSVGRLQHAARILSEKR 269 >UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=Bacteria RepID=D1AUV3_STRM9 Length = 272 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 133/276 (48%), Gaps = 7/276 (2%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 ++ ++ E ++ ++++K + C + ++ + + VSEA IV+ K +GF GF Sbjct: 4 ITLIQSFYPSFSKQEIKVADYVIKEKDAICFMPLHEITKKINVSEATIVRFVKKIGFKGF 63 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 + + + + E + + + + TI ++++N +++ A Sbjct: 64 IDFKLEVAREIATIEDERN-------TKEHYIENIEYNIIETIKNTKNLINKEDVENAIE 116 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 +++ ++G G S + Q++F+R G + D H +M AS E DV++V++ Sbjct: 117 AIENSKKLYVFGMGASGVAALEFQNRFMRFGKIGHSVSDGHFQVMYASTTTEKDVIVVIS 176 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 SG T D+ + +AK+NG KII IT+ SPIAKL+D +I + ET L G +++ Sbjct: 177 LSGETVDLIYPLSIAKENGCKIIAITNYILSPIAKLSDIVILTSGKETLLNGGALVSKMS 236 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 QL ++D A N ++A + Q + + Sbjct: 237 QLYIIDVLATGYALRNSKKAKLVRQGMAEAIANKNK 272 >UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4M2_9CLOT Length = 282 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 130/255 (50%), Gaps = 1/255 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R K ++ ++ + +++L + + ++A A VSE +++ L ++ Sbjct: 5 IFSLIRTKYNTLSSSQKDVADYILTNPDKVMMNTLNEIAAACRVSETTVLRFLHKLNYNS 64 Query: 76 FRNLRSALEDYFSQ-SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 ++ R L S+ +++ + ++ F + ++++K+ + T+ +I + + I++ + Sbjct: 65 YQLFRINLTQELSKDNQETVYDDVGFQDTEDEIIDKIIHSTVSSITDSRQIIDPASVKAV 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ + G G S I D+ HK +++G+ D HIM + A+ L + ++++ Sbjct: 125 VEKIAGARRIVVAGVGASGFIAQDLYHKLIKLGLNAVCANDPHIMNILATGLDQNTILIL 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +HSG + +V +AK+ ++ +T S +A A Y++CS + ET ++R Sbjct: 185 FSHSGESREVLDMAAIAKERRCQVCAVTSYAKSTLANQAGYLLCSSSRETMFRSDAMTSR 244 Query: 255 ILQLTLLDAFFVSVA 269 I+Q+ ++D +VS+ Sbjct: 245 IVQMVIIDILYVSLV 259 >UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=Burkholderia RepID=Q13K65_BURXL Length = 287 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 131/284 (46%), Gaps = 2/284 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + L P++R + E ++ + +L + + +I ++A+ VSE + + + + Sbjct: 2 SAPNLIPHIRSALANLRPAERKVADMVLSDVDFAMRASITELAQRAEVSEPSVTRFCRAI 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G G R+ + L + + +A D+ Q +++KV + I + ++ + Sbjct: 62 GAHGLRDFKMQLAQSVAGGVPYASTAVARDDDVQTLMDKVGEAAIGGITHARGALDPAVV 121 Query: 132 HRAARFFYQARQRDLYGAG-GSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 A AR+ +G G GS + D +FLR+ + A+ D H+ + A L++ GD Sbjct: 122 ESAIAALSSARRVFFFGVGSGSGLVAQDAALRFLRLDIASTAFTDGHLQRLYAGLMEPGD 181 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V ++HSGR+ +V ++++AK+ GA I +T+ S +A L D + P Sbjct: 182 VAFAISHSGRSVEVNESIQIAKERGATTIALTNVG-SRLAWLVDIPLLLRVPSPIDPNTP 240 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 +R++ L ++DA + VA + M+ A + +P A Sbjct: 241 GVSRLVHLCIMDALAIGVALKAGPKTLEKMRHAKARLASHAPEA 284 >UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=Q7MD38_VIBVY Length = 278 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 132/278 (47%), Gaps = 6/278 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + L LR E ++ + +++L+ + I D+A SEA +V++ + Sbjct: 1 MGSPKNLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +G+ G+ + R AL SQ+E + + D+ + + ++ + +++ Sbjct: 61 DMGYKGYSDFRMALAVDLSQTESRQQNHIE-----GDICDVSAQSAVDSLQDTAKLIDRK 115 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + R +QA G G S+ + + ++ +RIG + + D H+ MSAS +G Sbjct: 116 SLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQG 175 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+ V+ SG T +V A LA K ++ +T+ HSP++ L+ ++ + PE PL G Sbjct: 176 DLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGG 235 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++++ L L+D S+ + + ++Q+T +V Sbjct: 236 AFASKVGALLLVDVLVNSLLES-YPEYKDSVQETAEVV 272 >UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC5_9ACTN Length = 283 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 126/259 (48%), Gaps = 4/259 (1%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 + E ++ ++ + +++ +A+ S + I++ K LGF+G++ + L Sbjct: 17 SPAERNVIAYVSAHPHEVVGLSVRGLADVTFSSPSSILRFCKRLGFAGYKEFQRELIAEL 76 Query: 88 S---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 + + V +++ D++ + +V KV +RTI ++ + R A +AR Sbjct: 77 ALLGDKKDVALEDISMDDSVERIVGKVMKSNVRTIEATARTLDYTVLERCAARLKRARAV 136 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 +L+G G S + D+ K +R+ C+ Y D H ++ A + EGD+ + ++SG T +V Sbjct: 137 NLFGIGASRLVAHDLAQKLMRVDKECRLYDDWHDQLLCAKNMHEGDMAIAFSYSGLTQEV 196 Query: 205 KAAVELAKKNGAKIICITH-SYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 A+++ ++ +T S +A +AD ++ A E + ++R+ QL ++DA Sbjct: 197 LDCTAEAQRHNCPVVAVTKVDGSSKLATMADAVLGVAASEPLVRSGAMASRMAQLMVVDA 256 Query: 264 FFVSVAQLNIEQANINMQK 282 + + + E+A +++ Sbjct: 257 LYAAYVASDYERATHVIKQ 275 >UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_LISW6 Length = 283 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 128/281 (45%), Gaps = 1/281 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + + + + +E +I + +L + +I +A+ S A +V+ K + Sbjct: 2 SSGSIINRIEGILHDLPTSEKKIGQTVLANPEFTTTASIHKLAQKADASGAAVVRFCKSI 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G F L+ L +Q +++ ++ +E + +K+ + ++T+ + S ++ ++ Sbjct: 62 GLQSFPELKRQLSLDLAQPQKIGYYDIEPNEDFHTITDKLVSNMMQTMNDTASQLDETKV 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A A YG G S + D+ K+LR G A DAH++ M+ + + V Sbjct: 122 LTACDLLGDADTIYTYGVGASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKRKSV 181 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRN 250 + +++SG TS+V V+ AK N +I +T ++ + + AD + + APE + Sbjct: 182 FIAISNSGETSEVLQLVDQAKLNDVTVISLTRFGNNKLKEKADLALETSRAPEAEIRSTA 241 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 S+R QL ++D F A + ++ ++++ + F Sbjct: 242 TSSRQAQLLVVDILFYYYASHHYDEMIQQIKQSREATNRFR 282 >UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales RepID=D1PSB4_9FIRM Length = 282 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 131/276 (47%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N LR + +T + R+ ++L + + +I +A V+EA I + + L Sbjct: 2 NSCNFWELLRSRYSELTRSGRRVADYLTRHAEEAQYLSISSLAAECGVAEATIFRFCRSL 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF G+ ++ +L + +L + + L I +S++N + I Sbjct: 62 GFDGYNEMKISLAQANAIPTAAGADKLEPGADTATLCTHASAVALEAINGTRSVLNPEAI 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 AA +ARQ +G GGS + D+ +F + + + D+H+ ++ASL+ DV Sbjct: 122 DAAATLLQRARQVFCFGQGGSQILANDIWARFATVSTKFRTAGDSHMQTIAASLMVPEDV 181 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 VL +++SG T D+ + + K NGAK+I +TH +P LAD ++ A E+PL G + Sbjct: 182 VLFISYSGSTRDMMETLRIVKGNGAKVILLTHYADAPGTALADVVLLCGAKESPLDGGSI 241 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +A+I L + + + N E A I ++T + Sbjct: 242 AAKIAVLFVAEVLVLRFTLDNQELAAIARERTSKAL 277 >UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=A6UCC0_SINMW Length = 296 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 126/271 (46%), Gaps = 1/271 (0%) Query: 2 SQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSE 61 + + ++ + +R+++ + +++ ++ E +L I + AE VS+ Sbjct: 3 TNALQPKSIGGNNNILEVIRLRRADLRKSDRKVAELVLADPKRVINATIAEAAEWAGVSQ 62 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 +++ +G G+++ + L + S + + P V K+F+ T+ ++ Sbjct: 63 PTVIRFCASIGCQGYQDFKLRLAQSLALGMSATHSVIDASDTPAQVSAKIFDYTITSLDW 122 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 ++ ++ ++ RA +A + + +G G S + D Q KF GV C A DAH +M Sbjct: 123 VRNHLDPVQVSRAIDALSKASRIEFFGFGASGIVARDAQQKFPLFGVPCGAETDAHQQIM 182 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 S+L+ GDV +V++++G T + A+++G ++I I S P+ + D ++ Sbjct: 183 VVSMLKPGDVAVVISNTGATLAIIETARRARESGCQVIGIVGS-DGPLVEFCDIVLMVET 241 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLN 272 E + +RI LT++D SVA Sbjct: 242 LENTNIYTPTISRIAALTVIDILSTSVALRR 272 >UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C448 Length = 286 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 7/284 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L + + EN+ +I +++L+ + + +AE L VS++ IVK S+ +G Sbjct: 1 MTLLDIITYSLPRLAENQRKIAQFILENPENVLNLSSQQLAEILDVSQSAIVKFSQKVGV 60 Query: 74 SGFRNLRSALEDYFSQSE-------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 G+ L+ AL + + + L + +A D+ V K+ +I E ++ Sbjct: 61 KGYPALKLALSEIIGRQQLKDGAPHSALHNRIAPDDNLMVVAQKLAMEKNHSITETTKLI 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + + R Q+++ + G GGS D+ +K +IG+ D H+ + +A L Sbjct: 121 DFKQFERIVERIDQSQRVQIVGIGGSGLTAKDLSYKLQKIGITTLVESDHHVQIAAALTL 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 DV +V++ +GR D+ A +A+K GA +I IT SP+ +LADY++ S A E Sbjct: 181 NTHDVQIVISFTGRRKDMLTAANIARKQGACVIAITRDCDSPLGQLADYVLESIAEEDEW 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + S+R Q TL D F+++ Q +A + +++ Sbjct: 241 RSSSISSRTAQNTLTDLIFMALLQRREAKAKSLVMNARVVINKL 284 >UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n=3 Tax=Vibrionales RepID=A5L3V2_9GAMM Length = 282 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 141/280 (50%), Gaps = 5/280 (1%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 ++ ++ ++S + ++L + ++A+A+ VS++ IVK S+ +G+ GF Sbjct: 4 IAKVKALLPKLSPSDSLVARYVLDHPQQVKQLSSPELAKAVGVSQSTIVKFSQKIGYKGF 63 Query: 77 RNLRSALED----YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 ++ L Y S++ + + ++P V+ K+ +++ + +++ Sbjct: 64 SEMKVKLYQSDMSYQPVSQRGIHGTITRKDSPDTVMEKLLASKTQSLERTVLLNEGEQLS 123 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 AA + A + + G G S+ + D +K ++IG A PDAHI + +A+ L E DV+ Sbjct: 124 NAADLLHLANKIQISGVGASSLVAKDFAYKLMKIGHAVHAEPDAHIQIANAASLTENDVL 183 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG+T +V +LA+ AK+I I+ S + K AD + S A E + + + Sbjct: 184 VAISYSGKTREVVKVAQLARSKKAKVIVISQLSPSALDKYADIKLISAADENHIRSSSIT 243 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 AR Q + D F+++ Q EQA+ ++++ + V F Sbjct: 244 ARDSQFYITDLLFIALTQQE-EQADQLIEQSKSAVAEFKQ 282 >UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C511 Length = 286 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 5/286 (1%) Query: 10 LPNGIGLAPYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKV 67 L G + Y+R+K+ + T E I E++L+ + + + E S A I++ Sbjct: 3 LIGGDHMNAYIRIKEYNDSYTATEKLIAEYILEN--DILQDSAQALGEKTNTSAAAIIRF 60 Query: 68 SKLLGFSGFRNLRSALEDYFSQ-SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 SK +GF GF +L+ L + +Q + ++ +V K + + T+++ ++ Sbjct: 61 SKKIGFKGFSDLKMNLAQSTKEEKQQEVDLIFEPEDNISTLVEKGCRLNMNTVLKTYQLI 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 N+D + + A L+G GGS+ I D+ K +RIG + D H+ M A + Sbjct: 121 NIDTLEESIDLLNNASTIYLFGVGGSSVIGLDIYQKLMRIGKKVIYNADLHVQMTFAQSM 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 + D L++++SG T+ + + + +I IT +PI+KL+ Y + P+ E L Sbjct: 181 DQNDAALIISYSGSTTGLVDVARVLHEKQIPVISITQINANPISKLSTYSLKVPSEEKAL 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 S+RI + D + V + N E+ N+ + V Sbjct: 241 RIGAVSSRISSFVITDLLYYGVFKKNFEEHKKNLIDSKDNVSILKK 286 >UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9G3_9ACTN Length = 285 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 136/277 (49%), Gaps = 1/277 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 I + ++ E E I +++L+ + I ++A+ L V+++ I K ++ +G+ Sbjct: 4 ISVTAKIKSLLPSCAEKEQAIAQFILQHVRETSYMTIHELADKLGVADSTIFKFAQKMGY 63 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GFR+ R+ L E + + ++ + +F+ ++ ++ +++N D + R Sbjct: 64 KGFRDFRNDLLTEAYDPEVSVHEHITTRDSLATIAATIFHSSVTSLHNTLALLNEDNLKR 123 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A +G GGSN + AD HKFLR + CQ D HI +M ASLL DV + Sbjct: 124 ALSLINNAHTLTFFGCGGSNIVAADAYHKFLRSPLHCQNAIDEHIQIMQASLLGAQDVAI 183 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++HSG + E+ ++N II IT ++PI + AD + S + ET + ++ Sbjct: 184 IISHSGLSRTTLQIAEILRENRVPIIFITSYLNTPITRFADVVFISASEETGYRSESLAS 243 Query: 254 RILQLTLLDAFFVSVAQLNIEQ-ANINMQKTGAIVDF 289 R+ QL +LD F +V + ++ + + ++ Sbjct: 244 RVAQLVILDTLFCAVMFKSDDKNVAQTLHNIRSAINR 280 >UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DJX2_STACT Length = 288 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 126/278 (45%), Gaps = 3/278 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L ++R + + +T+NE I ++LL+ + + + + S A +++ + LGF G Sbjct: 6 LIIHIREQMKHLTKNEQHIAQFLLEHPEKVLEMSAQTLGDVTKTSSATVIRCAHKLGFKG 65 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F +L+ +L Q E E+A DE+P+++ K+ + T+ + ++ + Sbjct: 66 FVDLKLSLSRNLPQHEAHNYKEIAQDESPREIKRKLLSRAAYTLETTEVLLEDQALEALV 125 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD--VVL 193 Y ++ ++G G S+ + D+ KF R G+ DAH++ + + D + + Sbjct: 126 DKLYDVQKIVVFGVGASHIVAEDIYQKFTRAGMEVIQSADAHVLATVLAGYHKKDNVLFI 185 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS-PAPETPLLGRNAS 252 V++SG + +A GA + IT S +A AD ++ + E L S Sbjct: 186 GVSNSGHNQETLRLAHVAHYYGATVAAITSRSDSKLAGEADIVLLHDASSEKSLRLAATS 245 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + I QL +D F + + + ++ +T V+ + Sbjct: 246 SLIAQLMTVDILFYTYLSKDYQAHVAHLSETKKAVEMY 283 >UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6X6_RUMHA Length = 297 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 2/285 (0%) Query: 5 EFDSALPNGIGLAPYLRMKQ--EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 E + + +G L K+ E + E +I +LL + S + ++A+ + VS+A Sbjct: 8 EQNYMMKKEMGCRERLIDKRDGEHTKKTERKIAAYLLGNFDKSLHSTLLELADEIGVSDA 67 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 IV+ K +G++GF+ + ++ L+ D+ P ++ +K+F I + + Sbjct: 68 SIVRFCKSIGYTGFQEYKINAALQSVPEPRLYNPSLSVDDNPAEICDKIFAIESSALEQT 127 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 + +++ +++ A +AR+ +L G GGS D QHK L+IGVR + D + +MS Sbjct: 128 KQELDISVMNKVADVLLKARRINLVGTGGSAISARDFQHKLLKIGVRAELQEDKDLQLMS 187 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASLL E DV+ ++HSG V +ELA+K AKII +T + + + ADY + + Sbjct: 188 ASLLTEEDVLFAISHSGSNLHVAETIELAQKRNAKIITLTMKSKNILVEKADYPLYVVSE 247 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +T + SAR+ QL +LD +A N + + M+ T Sbjct: 248 KTIFESESFSARLAQLAMLDCLVALMAFKNFDGSLEAMKATRIAT 292 >UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=1 Tax=Listeria grayi DSM 20601 RepID=C2C2H3_LISGR Length = 282 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 118/279 (42%), Gaps = 2/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + + ++E ++ E +L+ + A +I +A+ S A IV+ K LG Sbjct: 5 SILNRIETLFKDLPKSEKKVAEMVLQDPAFASASSIHSLAKRADTSAAAIVRFCKSLGLK 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 F + + L S + DE+ + K+ +T+ + ++ +I Sbjct: 65 SFPDFKRQLYSELSSPVASGYYDFEEDESFDGISQKLLANYFQTLNDTAGQISEAKIRTV 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + +A YG G S + D+ K+LR G + D H++ M A ++ V Sbjct: 125 SEQLEKADTIYTYGVGASWLVAQDIAQKWLRAGKQVVISQDEHVLAM-AFAARKSGVFFA 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 V++SG T+ V E AK+N +I +T S + AD+++ + APE S+ Sbjct: 184 VSNSGETTSVIELAEQAKQNNLTVIGLTRFGPSKLKAKADFLLETSRAPEAKFRSTATSS 243 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + Q ++D + + +Q ++++ D F Sbjct: 244 KQAQFFIIDVLYYHYVSRHYDQMIEQIRESRQATDRFRQ 282 >UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor) n=2 Tax=Bacillus RepID=Q9K6Z8_BACHD Length = 284 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 3/285 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 +P + L + + E+++ ++LK L K +AE S++ IV+ K Sbjct: 1 MPQTM-LLAKIEQELASFPAAETKVANYVLKHPELVPTMTTKQLAEQANASQSSIVRFCK 59 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSE--LAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 LG F L+ AL ++ E + S L D++P + KV ++ + +N Sbjct: 60 RLGLESFPKLKLALAKELTRKEAYINSASLLETDDSPPILFQKVSSLNQMALDMATKAMN 119 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 A +A++ +G GGS C D Q+KF+R+G A D H M+ +++ Sbjct: 120 EQAFTEAVEQMVKAKKIAFFGVGGSFTSCIDGQYKFMRLGFHSLASGDYHQMIPFITMMD 179 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 E DVV+ ++ SG T +V + AK+ K+I IT S S + + A + P E Sbjct: 180 EQDVVICMSTSGNTKEVLDIADYAKERNVKLIGITASSRSALTRKAAVSLLIPDIEVQQR 239 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + ++R QL ++DA +VSV + + Sbjct: 240 IGSIASRTSQLNVIDALYVSVFHRIGSDLLDAFDASRKKTEEKRK 284 >UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM70_9ACTN Length = 283 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 133/269 (49%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 +R + +++ E ++ E+LL + + I +A+ L ++++ + K ++ LGF GFR+ Sbjct: 9 RVRALESSLSDKERQLAEFLLADPHKASKMTISQIAQTLGMADSTVFKFTQKLGFEGFRD 68 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 R L E + + P+ + VF ++R++ + + + + +I AA+ Sbjct: 69 FRGELAAEGFDPEVSIHEHITHKSTPKQMAETVFESSIRSLTDTKELFSEQDIIHAAKLI 128 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 Q YG GGS+ + AD HKFLR R D H+ +M AS D L+V+HS Sbjct: 129 EDCYQLTFYGMGGSSVVAADAYHKFLRTPKRVAYDADFHLQLMRASRSNGDDCALLVSHS 188 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 GR E ++ GA I IT + SP+ LAD + + A ET + ++RI QL Sbjct: 189 GRCIQTIQIAEKLREVGASTIVITSNPSSPLTALADACLVTIAEETAYRSESLASRISQL 248 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L+DA + V + A+ ++++ ++ Sbjct: 249 ALVDALYTIVMFSDENAASRSLKEVREVI 277 >UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9S0_9ACTN Length = 282 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 131/271 (48%), Gaps = 4/271 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L L+ ++ ++ +E +I+ ++LK I ++A+ VS A I ++ + L Sbjct: 5 SLLVLLKENKDRVSTSEQQIITYILKKPEAIVGVTIHELAQMTFVSAATISRLLRKLSLG 64 Query: 75 GFRNLRSALEDYFS---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ + L + S Q ++ ++ + ++ K+ T+ +I + + N I Sbjct: 65 GYKEFQQYLIYELASMKTSRQSSIEDINPKDSTKQIMFKIMRKTIESITLTEKLNNPKTI 124 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A + AR ++G G S D+Q+KFLR + C D H+ +++A+ + +GDV Sbjct: 125 DSCAELIHNARHITIFGMGSSLLSAQDLQYKFLRANIDCTLSADWHMQLIAANNMSDGDV 184 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP-IAKLADYIICSPAPETPLLGRN 250 + ++SG T + V A+ +G K+I IT S +S + + AD ++ + E L Sbjct: 185 AIAFSYSGVTPETLRCVHAAQDHGGKVIAITRSVNSTELVRHADIVLYVASTEPLLRSSA 244 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQ 281 ++RI QL ++D F ++ + + ++ Sbjct: 245 GTSRITQLMIVDTLFSTLVNKHYDVYATAIE 275 >UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBX8_9LACT Length = 285 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 135/284 (47%), Gaps = 3/284 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + N + L +R K+ + ++E +I E +L+ + D+A S A +++ + Sbjct: 1 MQNNVLL--TIREKKITLPQSEKKIAETILRDPVKVIQMSATDLATEAGSSSAAVIRFCR 58 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +G GF L+ L + L +++ DE + V K+ T E ++++ Sbjct: 59 SIGIKGFTELKLQLSADSQGIKDNLYTDILADENLEQVKKKMLINTNHLFKETNNVLDTK 118 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 +I R + +++ LYG G S+ + +D+Q KF R+G D H+++ S ++ E Sbjct: 119 QIERVSELLHESSIIYLYGLGASHIVASDIQQKFSRMGKIVVCSLDQHLLVTSMAVAGEN 178 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLG 248 V V++SG +V A + +AK+ G K + +T++ + ++ AD + + A E PL Sbjct: 179 AVFFGVSNSGEKKEVLALMIMAKELGLKTVALTNNTENALSLEADIALKTAFAHEAPLRS 238 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + + Q+ +D F A N + N++K+ A + ++ Sbjct: 239 GATISLLTQMYAVDILFYDYASKNYDLTVTNLEKSKAAIQRYNQ 282 >UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment) n=3 Tax=Lactobacillus RepID=C2D3P4_LACBR Length = 281 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 117/274 (42%), Gaps = 1/274 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 L+ + ++ +I ++++ + I+D+A S A + ++ K LG+S FR Sbjct: 8 LKQSFDNLSRTNKKIAKYVIDNPQAASEANIEDLAAVTETSTASVSRLVKTLGYSNFREF 67 Query: 80 RSALE-DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 +L + ++ ++ + +K+F + R + + + ++ +E R+ Sbjct: 68 TLSLAYTQLRPQNLPIFKDIDANDTLSTIADKIFTSSQRALQDTREGIDENEFARSVLRI 127 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 R+ +G GGS+ D HKFLR + C YPD + +M A L E D +VV+HS Sbjct: 128 IHCRRLGFFGLGGSSVAALDGYHKFLRTSIDCFYYPDFDVQLMQAVKLGEDDCAIVVSHS 187 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G+ E K+ +I IT SP+ +D S + E+ + + QL Sbjct: 188 GKNRQTIKIAETLKRRKVPVIAITSYQDSPLVGHSDITFISSSDESNYRSEGMYSLLAQL 247 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 T++D F+ ++ I++ Sbjct: 248 TIIDTLFMMATVRMGPATEDTIRSVQNIIESTRG 281 >UniRef50_P26833 Uncharacterized HTH-type transcriptional regulator CPE0189 n=15 Tax=Clostridiales RepID=Y189_CLOPE Length = 279 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 70/276 (25%), Positives = 139/276 (50%), Gaps = 2/276 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ L + T++E ++E++ + +I +A+ V EA I + +K LGF Sbjct: 1 MGILEQLENPKFKATKSEKTLIEYIKSDLDNIIYKSISIIAKESGVGEATITRFTKKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQ--VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 +GF++ + L S + ++ + DE+ + NK+ ++ + + +++D + Sbjct: 61 NGFQDFKVTLAKEISNKKNTSIINLHVHRDESVTETANKMLKSSINILEQTVKQIDLDLM 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + A++ G G S D+ +KF+RIG D+H M++ +S+ + DV Sbjct: 121 CKCRDLIMNAKRVYFIGIGYSGIAATDINYKFMRIGFTTVPVTDSHTMVIMSSITNDDDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ +++SG T +V V+ AK+NG KII +T +P+ KL+DY + + ET + Sbjct: 181 IVAISNSGTTKEVIKTVKQAKENGTKIITLTEDSDNPLRKLSDYELTYTSAETIFETGSI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 S++I Q+ LLD + V + +A KT + + Sbjct: 241 SSKIPQIFLLDLLYTEVIKEMFSEAVEKKIKTTSAI 276 >UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG85_KOSOT Length = 275 Score = 246 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 133/272 (48%), Gaps = 3/272 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + L+ + ++E+E R+ +++++ + I ++A+ SEA + ++ K LGFSG Sbjct: 2 IIVQLKGIYDSLSESERRVAKYIIERPDDVIHYTITELAKFSHSSEATVYRLVKKLGFSG 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 +++ + +L S ++V+ E + + Q+ V ++ + E +++++D + +A Sbjct: 62 YQSFKISLARELSIPQEVI--EEGSEGSYQNFVERIVQENISLAKETMAVLDLDALKKAV 119 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 AR+ +G G S + F +G Y D H +M AS L DVV+ + Sbjct: 120 ELIINARRLVFFGVGRSAVVAQSGSFNFALLGFSSTHYIDPHAQVMVASGLTNEDVVVGI 179 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +H+G D +V++A GAK I IT +SPI ++ D ++ + A P +RI Sbjct: 180 SHTGTIRDTVKSVQVAHAAGAKTIVITSGINSPITEVGDVVLYTAAG-KPSTSEFTVSRI 238 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + +LD + +V E+ + + K I+ Sbjct: 239 GEFLILDILYKTVVARMSERLSKHFDKLEEIL 270 >UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDH7_9FIRM Length = 281 Score = 246 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 130/275 (47%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L+ Q +T++ + E+L++ + +I +A V+EA + + + LG Sbjct: 2 STNFWELLQQHQGDLTKSGRTVAEYLVQHAAEAQYLSISSLARECQVAEATVFRFCRALG 61 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F G+ +R AL + V E A D + + + I Q+ ++ + Sbjct: 62 FEGYHEMRIALAQANATGVLVNQQEPAPDADTATLCEHASALFMTAINGTQNALSPQAVD 121 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A + ARQ G GGS A ++ +F I + +A D+H+ +M+ASL+ E DVV Sbjct: 122 QAVALLHSARQVFCMGQGGSMAAAKEICARFACITNKFRAVADSHMQVMAASLMTEQDVV 181 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 L V++SG T D+ + AK NGAKII ITH SP AKLAD ++ A E+PL + Sbjct: 182 LFVSYSGATRDLMETLRTAKANGAKIILITHYEDSPGAKLADIVLLCGAQESPLDSGSIP 241 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ L + + + + + ++T + Sbjct: 242 IKVAVLYVAEVLVLRYILDDKPGSTEAQERTTEAL 276 >UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIB3_RHOER Length = 291 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 4/285 (1%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 D + P + L +R ++ E RI E + +L+ + D+AE + S A +V Sbjct: 3 LDRSAPASVDLLARIRASLSSLSPAELRIAEIIEADPSLASTLTVNDLAERASTSTATVV 62 Query: 66 KVSKLLGFSGFRNLRSALED---YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 + +K LGF G+ LR AL +++ L ++ ++ +V+ K+ + Sbjct: 63 RTAKRLGFEGYPQLRLALAAISGSGTENTIPLGVDIVAADSAGEVMAKLAEFESEQLKGT 122 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 + + + AR+ ++YG G S + D+ K RI V C+ + D M+S Sbjct: 123 AQLTDPAALEEVVSRIRSARRVEVYGIGASGIVAQDLTLKLSRIDVNCRVHLDRDAAMVS 182 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASLL D+ + ++HSG TSDV + LA++ GA IT S +A + +++ + Sbjct: 183 ASLLGPDDIAVGISHSGETSDVVEPLALARRTGASTAAITGGARSTLAVQSHHVLLTAGR 242 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 E ++R QL ++D F VA + A +Q++ + Sbjct: 243 EFGFRSAAMASRTGQLLVVDTIFAMVAHS-LPSALSALQRSHDAI 286 >UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU Length = 291 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 121/285 (42%), Gaps = 7/285 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + L + + + +E I +++L G ++K++A+ S A IV++ + LG Sbjct: 1 MSIMTQLEFELD-FSSSEKTIAKYILDNGEDILNLSVKELAKQTYTSPATIVRLCRKLGL 59 Query: 74 SGFRNLRSALEDYF---SQSEQVLPSELAF--DEAPQDVVNKVFNITLRTIMEGQSIVNV 128 +G+ + + ++++ + F ++ + ++ N+ I + ++V+ Sbjct: 60 NGYGDFKIKYSAELQFDKKNKKRVDVNFPFGNTDSNSQIAYRIANLHQEAIEDTLNLVDF 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + QAR+ L+G G S D QHK +RIG + A + Sbjct: 120 KNLDKIINLLDQARRIYLFGNGNSLLAGFDFQHKMMRIGKMVEMRAHAGEQGFLSYTCSP 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV +++++SG T+++ + KK ++ IT + ++K YI+ + + E Sbjct: 180 DDVAILISYSGETNEMVELAKFLKKMHVPLLGITSIGDNQLSKYCTYIMNTGSREKIFSK 239 Query: 249 RN-ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 S++ LLD F + +LN + + D P Sbjct: 240 IAPYSSKTSISYLLDLIFSCIFRLNYDHYINEKINRDKLFDHRHP 284 >UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH25_PETMO Length = 283 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 139/275 (50%), Gaps = 3/275 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPG-NLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +L + T++E ++ E++L I ++A SEA I + K GF Sbjct: 4 IQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGFE 63 Query: 75 GFRNLRSALEDYFSQS--EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F++ + L ++ E+ + +++PQ+++ KV +L++I SI++++ Sbjct: 64 TFQDFKLTLALDNNEDIFEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDINNFL 123 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +AA F A++ ++YG G S+A+ +Q+K R+G A D H+ +SA+ L GD+ Sbjct: 124 QAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLNFGDLA 183 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++ SG T D ++ +AKK+GA I +T +SPI K +D ++ + E P+ Sbjct: 184 IGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTSAGR 243 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + ++Q+ ++ + + E+A + T V Sbjct: 244 SILVQIFAVEILSGLLYSIEYEKALTTGKDTARAV 278 >UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=1 Tax=Vibrio cholerae CT 5369-93 RepID=D0I0X8_VIBCH Length = 282 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 128/276 (46%), Gaps = 3/276 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + L LR EG + + ++++ + + I ++A SEA ++++ + L Sbjct: 5 PQVNLLSRLRYGMEGYSPKLKTVADFIVSNADSAQYLTITELARDTMTSEATVIRLCRDL 64 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF G+ + R AL SQ + +++A ++ D ++ + ++ + +++ +I Sbjct: 65 GFKGYSDFRMALAIEISQPQFTKNNDVAKEDG--DRIDDATQSAITSLQDTSILIDRKQI 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +R + +QA G G S+ + + + RIG + D HI M A D+ Sbjct: 123 NRICQMIHQADNIHCVGVGASSIVGRYLSFRLTRIGKSSTMFEDTHIAAMRAVKSTPSDL 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ SG T DV AKK + ++ +T+ HSP++ +D ++ + PE PL G Sbjct: 183 WFAISSSGSTKDVVYVATRAKKQQSPVVSLTNIRHSPLSVTSDEVMVAARPEGPLTGGAF 242 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++++ L L+D + + E A +++ T + Sbjct: 243 ASKVSALLLVDILINQLVAEHAEYA-ESVKDTAEVT 277 >UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG49_SEBTE Length = 283 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 124/276 (44%), Gaps = 6/276 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L LR + T NE ++++ + + ++A+ S A I+++ K +G Sbjct: 1 MSLIIKLREAK-NFTPNEIGAAKYIISHSDEVIRLSCTELAKKTYTSPATIIRLCKKIGI 59 Query: 74 SGFRNLRSALEDYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G++ + L + E +E+ ++ D+++K+ ++++ ++ E + + + Sbjct: 60 GGYQEFKVILATEINFFIKNSMEINKNNEIDKKDSISDIIDKISSLSIDSLKETKILTDK 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + A DLYG+G S+ + D +KF+RIG Y + A E Sbjct: 120 NVVKSVIDMINNAEILDLYGSGASHFVALDANYKFMRIGKVTATYALYDQQYVQAKNSNE 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 ++ ++SG T+++ ++ +N AKII IT + + + K AD + A E Sbjct: 180 NHAAIIFSYSGETAEMIEIAKILTENKAKIITITKNSDNTLEKFADKSLYVTAKENLYRS 239 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 +RI L ++D + + L E+A + KT Sbjct: 240 AAIYSRISMLNVIDILYTAYFNLIYEKALEALGKTR 275 >UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=Oxalobacteraceae RepID=A6T0F7_JANMA Length = 286 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 139/275 (50%), Gaps = 1/275 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L +R + + ++++E ++ +L+ L+ A I +A+ VSE +V+ + +GF G Sbjct: 2 LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDG 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++ + L + + ++ D+V+KV N ++ T+++ ++ ++ + I +A Sbjct: 62 WQAFKLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQAL 121 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + +A + YG G S I AD QHKF R GV AY D HI ++ASLL++GDVV+ + Sbjct: 122 QVLGRANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAI 181 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + G + + +V+LA+ +GA I+ + +P+A+LA +I SAR+ Sbjct: 182 SQRGSSLSLLRSVQLARSSGAAIVVL-APSGTPLAELATVLIPIDLHFHTDPYTPISARL 240 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 L ++D V +A + M + F Sbjct: 241 AHLVVIDILAVGLALRLSPERRKKMLNAQKALQKF 275 >UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulator TM_0326 n=7 Tax=Thermotogaceae RepID=Y326_THEMA Length = 280 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 3/280 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAV-SEAMIVKVSKLLG 72 + + ++ K + T E +I + +L +I D++E V SEA +VK K LG Sbjct: 1 MDVIQRIKEKYDEFTNAEKKIADTILSDPKGIIESSISDLSEKAGVKSEASVVKFYKKLG 60 Query: 73 FSGFRNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 + F+ + L S++ +++ +++ ++ + + K+F T+R I++ + +++D I Sbjct: 61 LNSFQQFKVLLAQSISRAPLEIVYEDVSSEDDTKTITEKIFKATVRAILDTLNWLDIDSI 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 R F A++ G S A+ D HKF RIG C D HI+ + D+ Sbjct: 121 ERTVDLFKNAQRIIFIGFAASAAVAFDAFHKFTRIGKNCLFSNDEHIIAAILATASPSDL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++H+G T V + AK+ ++ IT + S +AK +D ++ + ET + Sbjct: 181 LVAISHTGETISVVNFAKKAKEMKMPVVTITGNRKSTLAKYSDVVLATNTKETKIRTDAM 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++RI+QL +LD + +A + +A N+ K+ V Sbjct: 241 TSRIVQLVILDTIYTLLAARDP-RAIENLNKSRLAVSELK 279 >UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKN4_PASMU Length = 286 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 135/286 (47%), Gaps = 7/286 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G L+ ++ NE RI +++LK + + + K +A +AVS++ I+K S+ LG Sbjct: 1 MGFLIKLKHTYPSLSPNEQRIADFILKHPHEVKSSSSKALANQIAVSQSAIIKFSQKLGA 60 Query: 74 SGFRNLRSALEDYFSQSEQV------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 F + + A+ + + E L + + ++ K+F + + E S+ Sbjct: 61 DKFSDFKLAISEALIRQETQSEPRVHLHDSITDKDDLSEIAEKLFVEKQQALKESLSLNA 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 + + R QA++ L G G S + D +K +IG+ D H + + L Sbjct: 121 IPYVARVVEQLMQAKRIQLMGIGNSALVAKDFFYKLTKIGLPVVTETDTHASLAMSQSLT 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 D++ +++ SGR ++ A E AK KII +T +P+ +LADY++ S A E+ Sbjct: 181 PQDILFLISFSGRHREILLAAENAKARQIKIIALTALTTNPLHELADYLLYSVADESTFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + ++R Q + D F+ + Q E AN + ++ A++ + G Sbjct: 241 SSSIASRTAQHAITDLLFMGILQQ-KEHANDLILESRALIGQLNKG 285 >UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=Bifidobacterium RepID=B7GUA9_BIFLI Length = 289 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 125/282 (44%), Gaps = 4/282 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + +G+ + + E + +++ + + +A+ VS+ +++ ++ Sbjct: 1 MQSSVGIRERIDHVYPSLRPAERAVAQYIRDHIEEAADLTVGQMADIAHVSQPTVIRFAR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFD----EAPQDVVNKVFNITLRTIMEGQSI 125 LGF G+R LR L ++ + FD + ++ +K + I E S Sbjct: 61 KLGFGGYRELRYVLRHPAAEHKVTFNPLDGFDLNPWDGEDEIPSKAADGAKALIDELHSA 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 ++ +A ++ D++G S D+ K +G+ C+ DA++ + A Sbjct: 121 LDPKAYRKAVALLAESEFIDIFGVENSLTPAMDLFTKLGYLGLTCRLNTDAYLQQIGAGH 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 L G V + +HSG ++D A+ LAK +GAK I IT++ +P+A AD + + Sbjct: 181 LTHGAVAVAFSHSGSSADTVKALRLAKSHGAKTIAITNAIGAPLASWADVTLLTGRDSHT 240 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + G + + L+D ++ V + + + + ++G ++ Sbjct: 241 IYGNAIFSCVADTALVDMLYMGVILSDYGRFSTALDESGRMI 282 >UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax=Enterobacteriaceae RepID=MURR_SALAR Length = 287 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 139/281 (49%), Gaps = 7/281 (2%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R + TENE +I +LL + +++A+ L +S++ IVK ++ LG +GF Sbjct: 4 LAKMRNAEGEFTENEQKIATFLLAHVGELKTVSSRNMAKQLEISQSSIVKFAQKLGANGF 63 Query: 77 RNLRSALEDYFSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LR AL + S S + L S + +++ + + K+ + + E ++++ + Sbjct: 64 TELRMALIEEHSVSREKKRDKAVHLHSSITSEDSLEMMARKLNREKIVALEETYNLMDYE 123 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + + +A + G GGS + D+ K ++IG R D H+ A L++G Sbjct: 124 RLEQVINLISKAPLIQITGVGGSALVGRDLSFKLMKIGFRVACEVDTHVQATIAQALRQG 183 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + +++SG ++ E A+K GA +I IT SP+ +LADY + + + ET Sbjct: 184 DVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLADYTLDTVSGETEWRSS 243 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + S R Q ++ D FV + QLN ++ ++++ ++ Sbjct: 244 SMSTRTAQNSVTDLLFVGMVQLNDVESLRMIERSSELITLL 284 >UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU66_9CLOT Length = 285 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 119/277 (42%), Gaps = 3/277 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 L +R + +T E ++ +++L+ I +++ + V + + + + + Sbjct: 4 TNLLISIRSCYDRLTRLEKKVADYVLQHPQEVVKMTINELSNSCGVGDTTVFRFCRSMNV 63 Query: 74 SGFRNLRSALEDYFSQSEQVLPS---ELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G+++ + AL + ++ + LA ++ +V + + E S ++ D Sbjct: 64 GGYQDFKLALALSSNVNDMLDSKGEFNLAQSHDLHELAQQVSGVFTDAVNETLSSLDYDA 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 I R AR L+G G S +Q++ +RI D H+ + SA+ +QE Sbjct: 124 ISRTVEAILNARSVHLFGFGNSGVSALMMQNRMMRILPNIFYTSDVHMQLTSAATMQEDS 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V ++ +SG T D ++ + GA + IT +P A AD ++CS A E P+ G + Sbjct: 184 VAIIFCNSGITKDSIRIAQMTHEAGAFTVFITKFMQTPAAPYADVLLCSGATEGPIQGGS 243 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 S Q+ ++ + + + +A N K + Sbjct: 244 ISGVASQMYIVMLLYSELFRRMETRAQENKIKAAHAI 280 >UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=22 Tax=Enterococcus faecalis RepID=C2JLW7_ENTFA Length = 290 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 1/273 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 ++ + + + ++E +I E++LK + +++A+ S A I++ + +GF L Sbjct: 17 IQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSMDVNGFTEL 76 Query: 80 RSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + L Q +Q + +E+ E+ D+ K+ + + + ++ A Sbjct: 77 KLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAVNEAVDLLE 136 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 + +YG G S+ + D+ KF R+G D H+ ++ V +V+++SG Sbjct: 137 KTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSVFIVISNSG 196 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET-PLLGRNASARILQL 258 + +LAK+ G I+ IT S I + +D ++ + + E PL + + QL Sbjct: 197 TNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDVPLRSAATVSLVAQL 256 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++D F + A N ++ +Q + V+ Sbjct: 257 YVVDVLFFAYAAKNYKETLEKIQISRKNVERLK 289 >UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1QW74_CLOBU Length = 281 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 141/279 (50%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + MTE+E +I +++L + + ++A S + +V+ S+ LGF Sbjct: 1 MNCSLLIKQIYDKMTESEKKIADYVLVNSSEVYKFSASELANITKTSSSSVVRFSRKLGF 60 Query: 74 SGFRNLRSALE-DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 GF+ + L D + E + + ++ ++V+ K N +++I + S+++ I Sbjct: 61 EGFQEFKIELAKDDINPVENIEYDYIDTEDNIREVIVKTANKNIQSINDTISLLDEHTIE 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A + A+ ++G G S I D+Q+K LRI ++H+ + ++ + D+ Sbjct: 121 EAIKAIKNAKNIYIFGIGESALIGLDLQYKLLRIHKNAMISLESHVQLSMSANISNDDIA 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++ G+T +V +A+ K+ GAK I IT +P++ L D I P E L S Sbjct: 181 IGISYLGKTKEVYSALSKCKEKGAKCITITKFGENPVSSLGDIKIQVPFVEKDLRIGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +RI+QLT++D FV +A+ N +++T +++ Sbjct: 241 SRIVQLTVIDILFVGLAKENFSDVEKYLKETRNMIEELR 279 >UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEV7_ACHLI Length = 281 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 140/273 (51%), Gaps = 6/273 (2%) Query: 23 KQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSA 82 +E ++ E ++++L++ L +++ +AEA S A +V++ K LG++GF++ + Sbjct: 10 NKEALSMAERIVLDYLIENKTLLKDFSVEKIAEAAYTSPASVVRMCKKLGYNGFKDFKID 69 Query: 83 LEDYFSQSEQVLPSELAFDE----APQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + S+ +P + + Q+ K +R + E ++ + +AA Sbjct: 70 F--ILANSKVEIPETSEYTDVILIKDQNNGKKAIENNIRALEETINLYDEKTYTKAASLI 127 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 AR+ ++G G S +C D++ K RI C A ++H + AS + DVV+ +++S Sbjct: 128 MNARKILIFGKGSSFLVCKDLEMKLRRINKFCVAQGESHDQFVDASFINNKDVVIFISNS 187 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G+T ++ ++ LAK+N II IT S +A ++D ++ + A E+ ++RI Q+ Sbjct: 188 GKTKEIISSALLAKENKTPIISITRIGSSILADISDVVLYTSALESEFRSAAMTSRISQM 247 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +++DA + A +I+++ ++ T + F Sbjct: 248 SVVDALYAKCAYTDIDRSIQALETTYRTIKKFK 280 >UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2D0_9BACL Length = 284 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 134/279 (48%), Gaps = 1/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + E + E+E + +++L +I VA+ S A I ++ + LG S Sbjct: 5 SVLTQMEAMLEQLPESERKAAQYILTASAEVSGLSIHAVADKAGTSAAAITRLCRSLGLS 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ L ++ ++ ++ E Q+V+ K + +L+ I + + + I + Sbjct: 65 GFPDLKMRLSVDNAKPQRPGYYDIERGETIQNVIQKTVSNSLQAIQDMMLHLQPELIEQV 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 F +A +YG G S + AD K+LR+G + A D H++ + + G + + Sbjct: 125 VDSFREASVIHMYGVGASAIVAADAAQKWLRLGKQAFALQDEHLIAAALASAPPGALFMG 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 +++SG T +V +A+K G + I ++ + +A+LAD ++ +P APE L +S+ Sbjct: 185 ISYSGNTKEVLQLFRVAQKYGVRTIGLSRFGNHKVAELADLMLYTPQAPEATLRSGASSS 244 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 R+ QL ++D F + A E+ + + +T F Sbjct: 245 RLAQLVMIDILFFAYASTQYEETILRLSQTHEATAFLKQ 283 >UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q61_LACBA Length = 286 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 121/279 (43%), Gaps = 3/279 (1%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 +R + ++ E ++ + L + IK++A A VS A I + K + ++ +R Sbjct: 8 KIRGTYDQLSRTEKKVAQMALNTPAVVSEMTIKELASATGVSTATISRFVKRMDYANYRE 67 Query: 79 LRSALED---YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 AL Q ELA ++ + NK F+ T+ ++ ++ ++ RA Sbjct: 68 FTMALAHLAIEDGGEHQSSFPELAEGDSLATIANKTFHYTISSLEATNEALSEKDLARAV 127 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A + +G GGS+ D HKFLR + YPD I +M A+ L + D +V+ Sbjct: 128 LKLINAEKVTFFGLGGSSIAALDGYHKFLRTALSVTYYPDFDIQLMQAARLSDQDCAVVI 187 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSGR S+ VE ++N II IT SP+A+ AD S E + I Sbjct: 188 SHSGRNSETLQVVEELQRNDVSIIAITSYSGSPLAQAADVTFLSLTDEVNYRSEGMYSLI 247 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 QL +LD F+ + M K +++ + Sbjct: 248 SQLAILDTLFMMTVLRVSSRTGNVMTKVHDVIEQTRHDS 286 >UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NHI8_9LACT Length = 281 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 3/277 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ TE + I E++ + K++ + S A V+ SK +G+ Sbjct: 1 MSVLYKIKSSMSAFTETDRSIAEFVFVNRQVVLESNAKELGDMTKTSAAAWVRFSKKMGY 60 Query: 74 SGFRNLRSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G + AL +E + + L ++ ++ K N+ + I E S+++ + Sbjct: 61 KGLPAFKVALAKETQSYTNEDDIETFLNPQDSLMGLLQKTENMLTQNIRETFSLLDYHAL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A F ++A+ L G GGS+ +C D HK RI D H +M + L + DV Sbjct: 121 EKAIEFIHEAKTVFLLGVGGSSIVCLDFYHKMTRIHQNVMYDRDLHTLMPRIAQLDKNDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITH-SYHSPIAKLADYIICSPAPETPLLGRN 250 VLV++++G T V + ++AK GA+I+ +T + S ++ L+D + P E + + Sbjct: 181 VLVISYNGETESVNSIAKVAKTMGARIVGVTKYNLKSTLSTLSDIRLFVPVEEKEIRLGS 240 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++R LT+ D + +A+ + + +T + Sbjct: 241 ITSRNSLLTITDLLYYGIAKTDFNVTKDLLVRTRQFI 277 >UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillaceae RepID=Q03CI3_LACC3 Length = 280 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 130/274 (47%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L++ + ++ E ++ +L + + I ++++ VS A I + +K LG++ Sbjct: 3 DFLVQLQIYKPNLSGQEKKLAAYLQAHPDHASQANISELSQLTGVSTATISRFAKALGYT 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 F+ LR AL + + L +EL+ ++ + K+F + + + ++ D + +A Sbjct: 63 NFQALRMALAQTSPEDDHALFAELSPKDSVDTLAQKIFTSNIDALRTTLANLDTDALTKA 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 ++ A L+G G SN + D HKFLR + D H+ +M+A+ L D +++ Sbjct: 123 VKWITHAEHLGLFGLGASNLVALDGYHKFLRTAIPVAYAADYHMQLMAATHLGPRDAMIL 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +HSG D A ELAKK +I IT S S + K+AD + A E+ A Sbjct: 183 TSHSGEDKDAIALAELAKKQQVPLIVITGSPTSRLVKMADAAFVAVAEESRYRTEALHAL 242 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 I +++++D F+ A Q ++ A +D Sbjct: 243 IAEISIMDTLFMISAIKTDSQTAPLFRQVRATID 276 >UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2J8J9_FRASC Length = 293 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 118/265 (44%), Gaps = 3/265 (1%) Query: 5 EFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 E D+A P + +R ++ E R+ +L ++ ++A+ S A + Sbjct: 10 EGDAAAP---AVLERIRALSASLSSAEQRVARQVLADPVAMIHQSVSELAQVSGSSPATV 66 Query: 65 VKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 V+ + LG G++ L+ AL E+ L E++ + P ++ KV + E Sbjct: 67 VRFCQSLGLRGYQELKLALIRETLPVERQLVDEVSAADGPDEIAGKVLGGAASALTEAAR 126 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 ++ + A A + G S + D ++ +GV + DAH+ ++A Sbjct: 127 GIDGGVLAAIADLVVAAPRTLFVAVGTSAPLAMDAAYRLTTVGVDARFAGDAHVQHVTAR 186 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 +L GD+ + V+H+G T++ AA+ A GA IT SP+ +L + + + ET Sbjct: 187 MLAAGDLCVAVSHTGSTAETLAAMRAAVDAGAHTAAITSFARSPLTELVRHAVVVGSRET 246 Query: 245 PLLGRNASARILQLTLLDAFFVSVA 269 ++RI+ L++LDA F V Sbjct: 247 AYRIEAMTSRIVHLSVLDALFALVV 271 >UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF6_9LACT Length = 292 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 128/286 (44%), Gaps = 5/286 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L LR + + E I + +K G+ + ++A+ +SEA I K K +GF G Sbjct: 6 LEKLLRPYIKSFNDTEKIIADHFIKLGHDVVNKTLSNLADDTGLSEATIFKFVKKIGFDG 65 Query: 76 FRNLRSALEDYFSQSEQVLP-----SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 F N + ++ F E+ S+++ +++ + K+ + ++ + Sbjct: 66 FPNFKISVASNFQNIEERKNELTVFSDISKEDSSYAIAQKLVYSNKLALDNLIGSLDEER 125 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 I++A Y ++ +G G S+ I D HKFLR C D H+ + A+ L D Sbjct: 126 INQALNLIYDSQTIHFFGQGASSVIALDSYHKFLRTRFLCNYISDYHMQLSYATKLGPND 185 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V + +HSG T++ + + N II +T ++H+ + KL+ + E+ Sbjct: 186 CVFLFSHSGETNETIEVARILRNNQVNIIVLTGNHHTDLVKLSSISFVVDSEESAFQSET 245 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 ++RIL LT++D +V++ + + +++K + G K Sbjct: 246 LTSRILYLTIIDILYVALMYHDEAKNKDSLEKIRKALAVTKKGGTK 291 >UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU Length = 312 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 120/282 (42%), Gaps = 7/282 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L M + + +E I ++LK G + +A+A S A I ++ + L + Sbjct: 1 MSLLRKLEMAVD-FSTSEKLIATYILKNGPDVLNMSTSQLAKATYTSPATITRLCQKLEY 59 Query: 74 SGFRNLRSALEDYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+ + + AL SE + + + + + +I + ++ Sbjct: 60 KGYNDFKIALSAQLQYTFDRNSETNPNFPFKKRDTIHTIKHSIATLAKDSINLTVNNIDN 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 D + + QA+ D+YG G I +D Q+K RIG Q P + + A+ + Sbjct: 120 DILAKIIIMLDQAKVIDIYGVSGPLRIASDFQYKMFRIGKNVQIAPMVNEQLFQAAQSNK 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 +++++SG T++V AA EL K+ +I IT S ++KL DY++ + E Sbjct: 180 DHCAILISYSGETNEVIAAAELLKRRKVPMIAITSFGESRLSKLCDYVLFLDSRERIYSK 239 Query: 249 RNAS-ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 + + I +LD + + + ++ +T I+D Sbjct: 240 VSTFGSTISIHIMLDIIYSCLFARHYDENLELKLETDHIIDH 281 >UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales RepID=C6JFM8_9FIRM Length = 285 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 119/277 (42%), Gaps = 4/277 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + +T++ ++ +++ + +I +AE VSEA I + + LG S Sbjct: 4 SILDSITEQYHSLTKSGKKLADYVFSHTTETQYLSITSLAENCKVSEATITRFCRGLGLS 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSE----LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G+ + AL ++ S ++ +++ + KV L ++ E ++ + +E Sbjct: 64 GYNAFKLALAQADRTTDLGDSSNSAEPVSSEDSISTICAKVHAANLLSLNESYALYDEEE 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + +A +R+ +G GGS + + +F D+H+ + ++ D Sbjct: 124 MSKAISILSSSRRIYCFGQGGSMIMAMEAWARFSTASPNFVHICDSHMQASAIAMADSKD 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 +L ++SG T D+ +++A +I ITH S A+ A ++ E+PL + Sbjct: 184 AILFFSYSGSTRDMCDTLQIASSRHVPVILITHFPKSAGAEFASVVLQCGYNESPLQSGS 243 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +A++ QL L+D F + + T + Sbjct: 244 VAAKVGQLFLIDCLFYGYCSQKPDTCSAARSATAHAI 280 >UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=Streptomyces RepID=B5HLI6_9ACTO Length = 317 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 5/280 (1%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 G LA +R MT + R+ E + A + +AE SEA +V+ ++LLG Sbjct: 32 GSALAAKVRTLGPSMTRSMHRVAEAVAADPAGCAALTVTGLAERTGTSEATVVRTARLLG 91 Query: 73 FSGFRNLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 + G+R+LR AL +Q + + +++A D+ DVV K+ +T+ + + ++ Sbjct: 92 YPGYRDLRLALAGLAAQQQSGRAPAITTDIAVDDPIADVVAKLAYDEQQTLADTAAGLDT 151 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 ++ A AR+ D+YG G S + D+ K LRIG+ QA+ D H+ + +A L+ Sbjct: 152 AQLGAAVAATASARRIDVYGVGASGLVAQDLTQKLLRIGLIAQAHSDPHLAVTNAVQLRS 211 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLL 247 GDV + +THSG T DV + +A ++GA + IT + + AD+++ + A E+ L Sbjct: 212 GDVAIAITHSGATGDVIEPLRVAFEHGATTVAITGRPDGAVTQYADHVLTTSTARESELR 271 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 S+R QL ++D FV VAQ E A + + + Sbjct: 272 PAAMSSRTSQLLVVDCLFVGVAQRTYETAAPALAASYEAL 311 >UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocaceae RepID=Q03YQ8_LEUMM Length = 284 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 2/281 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR +++ E +++++++ + + I++++E VS A I + K +G Sbjct: 4 NIIAQLRAQRKQYNTTEQKLIDFIINHVSEAREANIQEMSELSGVSTATISRFVKKIGLE 63 Query: 75 GFRNLRSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 FR +L +Q + E+A + V KVF + S + ++ Sbjct: 64 SFREFSVSLASAATQMAASVDLFGEIADTDDTIAVAQKVFGGAENALAATVSNLTATQLD 123 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A AR+ +G GGS+ + + HKFLR + A+PD + +M A L D Sbjct: 124 EATLALISARRVGFFGIGGSSIVAFNAYHKFLRTPIDVIAHPDYDVQLMQAVKLNSNDTA 183 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +V++HSGR D + + KII +T SP+AKLAD ++ S A E + S Sbjct: 184 VVISHSGRNKDTLLIAKKLHEQHVKIIAVTSFKDSPLAKLADLVLLSLAEEVNFRSESMS 243 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + I QLT++D F V + + +++ Sbjct: 244 SLIAQLTIIDTLFTLVGSHLSQDTQSVVDTMRDVIEETRSH 284 >UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteriaceae RepID=A4WDW6_ENT38 Length = 274 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 132/278 (47%), Gaps = 9/278 (3%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + L LR G + + ++ ++L + I ++A SEA + ++ + Sbjct: 1 MSENENLLLRLRQGVSGYSPTQQKLGSFVLNDPSRVLYLTITELARESDTSEASVTRLCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LG G+ + AL + L D ++++ ++ + + +++ + Sbjct: 61 TLGCKGYTEFKMALALDVQREHVPLKK--------GDEIDEIVEESILALQDTSRLLDRE 112 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + +AA+ +Q+R +YG S I + +K LR+G Q + D H M+A+ L Sbjct: 113 ILLKAAQALHQSRSVYIYGVAASAIIGDYLHYKLLRLGKPAQLFSDMHRASMNATTLTSD 172 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+V+ ++ SG T D+ V+LA+K GA ++ ++++ SP+ L+D ++ + PE PL Sbjct: 173 DLVVAISSSGSTRDLLHVVKLARKRGAHVLALSNTPRSPLTSLSDMLLVAAKPEGPLSAG 232 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +A++ + L++ ++ L+ ++ Q+T + Sbjct: 233 ALNAKVGVMLLVELLATTMISLD-DRYGDASQQTASAT 269 >UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteraceae RepID=B9NXN7_9RHOB Length = 320 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 132/283 (46%), Gaps = 3/283 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + L P L Q + E ++ +++ N + I ++AE +VS+ +V+ + L Sbjct: 30 GAVDLIPALHNSQTKLAVQEQKVADYVKDHLNEISSMTIGNLAERCSVSKPTVVRFCRSL 89 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD-VVNKVFNITLRTIMEGQSIVNVDE 130 G GFR+ + L + S Q L + + + +++V T+ + ++ + Sbjct: 90 GCEGFRDFKLRLAQNVAVSAQYLYRNAGDESSDANSAIDQVLGALFATLDVMRGQIDTER 149 Query: 131 IHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A RQ G GGS+ + + ++F R+G+ D++++ M A+ L Sbjct: 150 LEEARDACLDRRQILFAGIGGGSSLVAQEASNRFFRLGIPSFFVNDSYVLQMRAAALGLE 209 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV+ +V+ SG + +A E+A GA I IT ++ ++ ++ + + PE + + Sbjct: 210 DVLFLVSASGEADAIVSAAEVANGYGATTISITK-PNTRLSDISKIALLTELPEDSDIYK 268 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++R L ++DA ++VAQ ++ N+++ A + + Sbjct: 269 PTASRYAHLAIVDALAMTVAQEMTDETKENLRRIRASLTAYHG 311 >UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016945F6 Length = 248 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 4/246 (1%) Query: 53 VAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVL----PSELAFDEAPQDVV 108 +AE VSEA IV++S+ L G++ L+ + +QS E+ D + Q +V Sbjct: 3 LAELAEVSEATIVRLSRSLNLKGYQELKLRIAADLAQSLNSNLAESYQEIHMDASSQSLV 62 Query: 109 NKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGV 168 + + +R+I + S++N+ E+ RA AR+ L+G G S I D + K RI Sbjct: 63 ESISHNNMRSIQDTMSVLNIKELDRAIEVLGGARKITLFGIGASAVIAQDFKQKLTRINR 122 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 C+A D A+ LQE D VL +++SG T D+ A++ AK+ GA +I +T H+P Sbjct: 123 WCEAAYDFDSQATLAANLQEKDAVLGISYSGNTQDILLAMQAAKERGATLISLTKFGHNP 182 Query: 229 IAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 +A+ A + + + E + ++RI QL ++D +V +A+ N E+ + ++ T V Sbjct: 183 VAEQAHIRLFTSSLEKSIRSGAMASRIAQLNVIDILYVGIARQNYEENILALENTRKAVK 242 Query: 289 FFSPGA 294 + Sbjct: 243 MMNRHG 248 >UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYI4_9GAMM Length = 278 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 1/258 (0%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 +++ +I ++ A +A VSE + + LG+ GF + + +L Sbjct: 15 SKSAHKIAACVVANPEAILASTTASLAAQAGVSEPTVNRFCTGLGYKGFPDFKLSLAAEL 74 Query: 88 SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLY 147 ++ + + ++ D++ V K+F T ++ Q +++ + AR L Sbjct: 75 ARKQPRMTRDIDPDDSAAKVAAKIFESTQASLSNTQDHLDLAALQDVVAAMSNARSIALC 134 Query: 148 GAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAA 207 G G S ++ D QHK LR + A+ D + A+ L D+++ ++++GRT+ + Sbjct: 135 GLGASASVALDAQHKLLRFPIPIMAHTDIINQRVVAAGLGADDLLICISYTGRTTAMIEL 194 Query: 208 VELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVS 267 ELA G ++ IT HSP+A ++ + E ++RI QL ++D Sbjct: 195 AELAVSRGCQVAGITS-PHSPLANTCPLVLGVESGEDTDRYTPMTSRIAQLVIIDILATC 253 Query: 268 VAQLNIEQANINMQKTGA 285 +A E ++Q+ Sbjct: 254 LALEQGEAFADHLQEVKR 271 >UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=Anaerococcus RepID=C7REF2_ANAPD Length = 279 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 128/274 (46%), Gaps = 1/274 (0%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 ++ + E T ++++I +++L + +A+ S++ I++ + +G+ G+ + Sbjct: 6 KIKERSEDFTPSDTKIAKYILDKPGEVIKINSQKLADLTGTSQSAIIRFVQKIGYKGYTS 65 Query: 79 LRSALEDYFSQSEQVLPSE-LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 L+ + E L SE ++ D+ D++ K + +I + ++++ D+I +A Sbjct: 66 LKLDIAKSLENDEINLKSEVISADDKVGDIIEKSKINVISSIEKTYALIDEDQISKAIDN 125 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 A L G G S +C D +K R G + DAH + + ++E D+++ +T+ Sbjct: 126 IVYANFVYLAGIGSSGLVCEDFLYKLQRSGKKAFYETDAHTNLSLLTNIKEDDLLICITY 185 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 + + +V A E AK GAK+I IT + +A ++D +I P E + S+R Sbjct: 186 TALSKEVLIAAEYAKTIGAKLISITKAGRGKLANMSDILIPIPEIEKKMRYGAISSRFAS 245 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + D F N+++ N+ + + D Sbjct: 246 QIITDILFYGYISKNMDEVVKNLMVSKELTDKLK 279 >UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUN7_9ACTO Length = 294 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 5/261 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R +T E R+ E +L + I +AE S + + + LG +G Sbjct: 4 IETRIRGLVPTLTPAEQRVAEQVLADPLGTHRGTIGQLAERSRTSLTTVTRFCRALGMAG 63 Query: 76 FRNLRSALEDYFSQSEQV-----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 ++ LR AL ++ +++ D+ Q V+ + +R + E S +++ Sbjct: 64 YQELRFALATEAGEASSRDWTLGAAADIGPDDPMQSVLANLVATDVRALQETASQLDLAV 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + AR+ DLY GS A+ D+Q + ++G+ C + D H + SA+LL D Sbjct: 124 AEQLVDAITTARRVDLYAVSGSAAVTNDLQRRLHQLGITCHLWIDVHDALASATLLGPED 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V + ++HSG T +V + A+ GA +T+ S I +A ++ + A E + Sbjct: 184 VAIGISHSGETIEVIEPLTAARDAGAVTAAVTNFPRSAITSVAGLLLTTSAREATYRSGS 243 Query: 251 ASARILQLTLLDAFFVSVAQL 271 S R QL ++D VAQ Sbjct: 244 LSGRHTQLLVIDCLVTGVAQR 264 >UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNY6_HAHCH Length = 285 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 131/282 (46%), Gaps = 1/282 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + +LR ++ + ++E ++ E +L+ N I D+A VSE IV+ + Sbjct: 1 MGRPHDILSWLRQNRDTLRKSEQKVAECVLRNPNDVIHMRIVDLATEAGVSEPTIVRFCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 + F F++ + +L + ++ P ++ Q + K+F+ ++ + + + D Sbjct: 61 TICFDSFQSFKVSLAQQLASMQRQTPFRARSGDSLQQLGAKIFSDVQSSLQQVFNQLAWD 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I +A + + + +G G S A+ AD Q KF R+ A PD M+ A L++ Sbjct: 121 RIEQACAWISNSPRLYFFGYGASAAVAADAQQKFFRLKPSTHACPDPDTQMLIAGLVETN 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV++ ++HSGRT+++ + A+ +GAK++ I S +A +A+ I E Sbjct: 181 DVIIAISHSGRTNNLIQSCMQARASGAKVVAI-SPPQSALANIANLNIGVSVDENADAFT 239 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++R+ L +LD ++ Q EQ + + + Sbjct: 240 PLASRLAHLMILDTIASNLFQKLDEQHVQKLNQAKKNLSSLR 281 >UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AH41_LEIXX Length = 289 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 6/284 (2%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R ++ E+RI + +++ I ++A S+A I + + L +S Sbjct: 3 DVLSAVRQAVPRLSATEARIAQTVIEHPQRVVDLTIAELAAVCDASQASIARFCQALRYS 62 Query: 75 GFRNLRSALEDYFSQSE------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+R R A+ S+ + ++ SE+ ++ Q+VV K+ I ++ Sbjct: 63 GYREFRLAVAAATSREQATRERFELTESEIDPSDSLQEVVAKIAYQETLAIERTARELDA 122 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + A + DLYG G S D+Q K RIG+ D+H+ + SA+L + Sbjct: 123 EALDAVVAAIIAASRVDLYGIGSSILTAQDLQQKLSRIGLTAFCSVDSHLALSSAALQKP 182 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 G+V + +HSG T + A+ +A+ GA + IT+ S IA ++D ++ + A E Sbjct: 183 GNVAIAFSHSGETRETNHALAVARAAGATTVAITNVPESSIAAVSDLLLMTQARENFYRS 242 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++R QL L+D FV VAQ +Q +++ T V P Sbjct: 243 GAMASRTAQLALVDFLFVRVAQRLYDQMTDSLRLTYEAVRSQRP 286 >UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1Y9_BEUC1 Length = 307 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 5/287 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 G+ LR + ++ R E +L S A I D+AEA S + + ++ + L Sbjct: 13 RSGGILAELRRLLPDLPDSVRRTAERVLADPVASVAGTITDLAEASGTSPSAVSRLCRRL 72 Query: 72 GFSGFRNLRSALEDYFSQS-----EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 G G+ LR A+ + S E + + ++ +DV + T R + + + + Sbjct: 73 GVDGYPALRIAVVADATASASSPWEIDISRTIGPTDSLEDVAGTLGAATSRAVHDTLAGL 132 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 ++D + A AR+ LYG GS + A++Q + RIG+ ++ D H + A+LL Sbjct: 133 DLDVLRDVAHAVAGARRVHLYGVSGSAVMTAELQLRLHRIGIATWSFADVHEGLTGAALL 192 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 GDV + V+++G T + + A A + +T + S +A +AD I+ + ET Sbjct: 193 GPGDVAIAVSYTGETIETLEMLRAAGSRDALTVAVTGAPRSSLAAVADRILVTVTEETTF 252 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 +AR +LT+++ +++V QL E+ + +T V G Sbjct: 253 REGPLAARFSELTVVELLYLAVGQLTYERTTELLTQTALAVRRHQAG 299 >UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family protein n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A71F3 Length = 300 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 11/296 (3%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 MS ++ DS L + + + + + + L + + ++A VS Sbjct: 3 MSSTDIDS------DLFSLIHARLPDLAAAQRLVAKVFLDKPEWAMQAHVNEIAVFAGVS 56 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 E +V+ + LGF G R+ + + + L + ++ ++V KV + ++ Sbjct: 57 EPTVVRFCRALGFHGLRDFKLRVAQQVALGSVALHRNVTAVDSIDEIVGKVLRSSADILL 116 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAG-GSNAICADVQHKFLRIGVRCQAYPDAHIM 179 + + + ++I RA A + D YG G S + AD Q + R G++ Q Y DA++ Sbjct: 117 DIERQLPREQIKRAISALGSAHRVDCYGVGTTSGFVAADAQARLFRFGIQAQTYTDANMQ 176 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS 239 M SA+ L GD V+ V+H GR + AV +A++ GA +I I +P+A D + Sbjct: 177 MFSAATLSPGDGVIAVSHFGRMPFLLEAVRVARERGAVVIGICE-PGTPLAGECDIPLTF 235 Query: 240 PAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGAL 295 P + + A I L ++D V VA E+ +++ + + SP L Sbjct: 236 ALPASVNAYIGSDACIAHLAIIDILIVGVA---FERGAAGIEQLRRLQNVLSPHGL 288 >UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PED1_BACCO Length = 289 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 119/272 (43%), Gaps = 2/272 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ K ++++E ++ E++L + ++A+ VS A +V+ + +G S Sbjct: 6 NIILQIKSKLTSLSKSEKKLGEYILSHAVETVNDNTSELAKKAGVSPATVVRFCRSIGLS 65 Query: 75 GFRNLRSAL-EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF L+ L D ++ + +++ +E + +K+ ++I + +++ I + Sbjct: 66 GFSQLKIRLYADASGGLDREIYTDITPNEDITMIADKLALRFNQSITQTANLLETSCIEK 125 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 ++ +YG G S+ D HKF RIG D H++ S + + + Sbjct: 126 ITAMVDKSPAIYVYGIGASHVAAEDFTHKFSRIGKPVVHTLDHHLLGSSLINASKDCMFV 185 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET-PLLGRNAS 252 +++SG T++ ++AK+NG + IT S +A + D + E L + Sbjct: 186 AISNSGETNEAIKLTQIAKQNGLFTVGITQKRDSTLASIVDAPLIHHGGEAVLLRSAATT 245 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 + QL +D + + + + ++ + Sbjct: 246 SLAAQLFTIDVLYFAYVAKHYHEIMGRLKNSK 277 >UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=Lactococcus lactis RepID=A2RL41_LACLM Length = 283 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 122/280 (43%), Gaps = 3/280 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R T E +I +++ + G + ++VA + S A +V+ S+ LG+ Sbjct: 1 MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGY 60 Query: 74 SGFRNLRSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF L+ L ++ + ++ E+ E P + NK+ + + ++ DEI Sbjct: 61 DGFSQLKQKLSASYAVHEDDEDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEI 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A +A ++G G S+ + D+ KF RIG + DAH+ + S S+ + Sbjct: 121 MAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHLFVSSLSISDRKTI 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET-PLLGRN 250 + ++ G T +V + + II IT S + +++DYI+ S + E + Sbjct: 181 FIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA 240 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + + QL ++D F + ++ ++KT + Sbjct: 241 TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIKLL 280 >UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID=A0Z4E2_9GAMM Length = 291 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 124/278 (44%), Gaps = 1/278 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + N + ++ G+++++++I +L + +I +A+ VSE + + K Sbjct: 1 MANDTNVLTQIQAALPGLSKSDTKIAHVVLADPEAATHASIALLAQQANVSEPSVNRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LG +G+ + + L + + + ++ K+ + T+ ++ + + + Sbjct: 61 RLGATGYPDFKIWLARSLVAGVRYISQVVDPEDTVTTYPGKLVDNTVNALLLAREQLPLK 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A A + +G G S A+ D +HKF R + D ++ M A+ +G Sbjct: 121 TLEVAVEHLDAAGRIYFFGMGTSAAVAQDAEHKFFRFQTPVTTHTDPLMLRMLAAGGSQG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++H+GRT + A LA +GA +I +T SP+A+++ +I APE Sbjct: 181 DVFVFISHTGRTEAIVDAAALASASGATVISLTA-QDSPLAQVSHCVIGLEAPENTEDYL 239 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++RI+ L ++D V E ++ + + Sbjct: 240 PMTSRIVHLVIIDILVTGVTLKRGEPCIEHLARIKESL 277 >UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLH9_PECWW Length = 320 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 136/290 (46%), Gaps = 4/290 (1%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 M+ E ++ N + Y+ G+++ I ++L+ ++ +K +A + VS Sbjct: 22 MATQESPMSI-NKEKVRTYIANILHGLSDTNQTIANYVLQNPSMVAQLPVKKLAVEIGVS 80 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYF---SQSEQVLPSELAFDEAPQDVVNKVFNITLR 117 EA IV+ K +G++G L+SAL S + ++ ++ DV K+ R Sbjct: 81 EATIVRFCKHIGYAGLLELKSALNRELFDDSDLSLPVTPDILMNDTRHDVAQKIALTVDR 140 Query: 118 TIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAH 177 + E ++++ I++ F AR+ G G S + + K RIG+ A+ D Sbjct: 141 AVKETIDLIDMQTINQIVSLFISARRVMFIGFGASGLAALEARDKMNRIGIDSDAFTDRF 200 Query: 178 IMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII 237 M + + L+ D+V+ +HSG T +V A +LA+K GA + ITHS HSP+ L +Y++ Sbjct: 201 SMTLKLANLKPDDLVVAFSHSGETPEVVNAFKLAEKAGATRLAITHSTHSPLTSLGNYVL 260 Query: 238 CSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + G + R+ QL +++ + + N + + A++ Sbjct: 261 LTCGESERYQGDSIGTRVSQLFMIEFLCTELTKQNFKDFSSQSISIKALL 310 >UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=A0JVW9_ARTS2 Length = 309 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 134/284 (47%), Gaps = 12/284 (4%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 G GL + + + + ++ E +LK + I ++A A V E+ + + K L Sbjct: 6 TGGGLLHRISGRLPYLPPSLRQVAEAVLKSPEQAQTMTISELAVAAGVGESTVSRFVKEL 65 Query: 72 GFSGFRNLRSALEDYF-----SQSEQVLPSELAFD-----EAPQDVVNKVFNITLRTIME 121 G G++++ L + + S + SE+ ++ + ++ KV +++++ Sbjct: 66 GIDGYKSMLLGLAEATFISKAATSARTADSEVVYEGVNRGDTAAEIAGKVERSSVQSLRR 125 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 +V+ I RA + G S+ + +F R G +C Y D I +M Sbjct: 126 TGQRQDVEAIQRAVDLIDASNTVIFSCMGSSSIAAEEAVMRFTRAGKKCMLYRDTTIQVM 185 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 A++++ GD+++ ++ SGR++ + A+ LA++ GA I IT + SP+ AD ++ + Sbjct: 186 LAAIIEPGDLLIGISDSGRSTPIIDAMHLARQRGAATIAITGAEGSPLRNYADVVLYTAT 245 Query: 242 PET--PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 + L G + +++ QL ++D + + A + + ++++T Sbjct: 246 VPSGGELYGESVTSKWGQLLVIDILYATYASRHYDATVEHLKQT 289 >UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SX74_9RHIZ Length = 314 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 123/281 (43%), Gaps = 3/281 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ + E R+ + +L + + +A+ VSE + + + +G Sbjct: 27 DIISLVKDSYSELRRAERRVADVVLDDVKYAVDASNAALAQRAGVSEPTVTRFCRAIGCE 86 Query: 75 GFRNLRSALEDYFSQSEQVL-PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 G R+ + L L S N VF R + E + ++ E+ + Sbjct: 87 GLRDFKLKLAQSLVVGALYLAKSPAPGSGNGMPFWNAVFGEARRALQEAERQLDPVELQK 146 Query: 134 AARFFYQARQRDLYGAGG-SNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 AA +ARQ ++G GG S+A+ + Q++ R G+ A D ++M M+AS L+ GD+V Sbjct: 147 AAELIAKARQVTVFGLGGSSSALAQETQYRLFRYGITVNAQCDPYLMRMTASTLKPGDLV 206 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++ +GRT +V AVELAK A I +T + +A+ D + PE P + + Sbjct: 207 IAISATGRTREVIEAVELAKHYRANAIGVTA-PDTELARACDVRLAVAVPEYPDTLKPTA 265 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 +R L ++D V+ A A +++ G Sbjct: 266 SRYAFLAMIDLLAVASAYKLDASARETVRRIKYNAQIHRTG 306 >UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=Lactobacillales RepID=D0RS60_9STRE Length = 277 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 127/275 (46%), Gaps = 10/275 (3%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P + +T E +I ++ L L+ + + V++ L VS + + +K GFS Sbjct: 4 NILPVIESVYGSLTHLEKKIADYFLSAEALTADLSAQAVSQRLYVSVPSLTRFAKKCGFS 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+R ++ S+S+ V +D+ V + + + S+++ ++ R Sbjct: 64 GYRQFIFEFQESSSESKNV----------SRDLTRNVLSDYGELLNKTFSLIDEEQFLRV 113 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A + +YG G S + +++ +F+R+G+ C+A D H++ M+ +L +V+ Sbjct: 114 GDMLNNAGRVYIYGQGSSGLVAREMEFRFMRLGMVCKAITDDHMIRMNRVMLNPDCLVIG 173 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG T + A++ AKK GAK + +T + + + D ++ + G N S + Sbjct: 174 ISISGETKIITQAIQNAKKVGAKTVLVTSNNSDDLRQQCDELVLVAVKKHLAQGNNISPQ 233 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 L ++D F+ L+ + + T + ++ Sbjct: 234 FPVLVVMDIFYAYYMDLDRDHRSQIFTNTLSALEE 268 >UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enterococcus RepID=C0X1P6_ENTFA Length = 285 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 129/260 (49%), Gaps = 8/260 (3%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + +T++E ++ +++L G + D+ V +A I++ + LGF Sbjct: 14 MNYIYLINEHYPLLTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGF 73 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SGF +L+ + ++ PS + + +V + + ++N +++ + Sbjct: 74 SGFSDLKIEIAKEDFSKKKEQPSSGKYHD-------EVAKSLIEVLQSTSCLINEEKLTK 126 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A + QA ++G G S D++ FLR+G++ +A D H ASLL + D+V+ Sbjct: 127 AIQLINQASSLYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVI 186 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 + + SG+T D ++++AK NGAKI+ IT+ HSPI K AD ++ + A E L G + + Sbjct: 187 IFSLSGKTKDTYDSLKIAKNNGAKILAITNYIHSPIGKSADLVLQT-AIEEFLNGGSLAG 245 Query: 254 RILQLTLLDAFFVSVAQLNI 273 +I QL + D Q N Sbjct: 246 KISQLYICDLLVHEYEQNNK 265 >UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R285_BRAHW Length = 285 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 119/274 (43%), Gaps = 2/274 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R K E ++ +I ++L D+++ VS A +V+ +K LGF G L Sbjct: 7 IRDKYEDFSKAYKKISNYILSNPKEVIKLTALDISKNCGVSSASVVRFAKDLGFKGLDEL 66 Query: 80 RSALEDYFSQSEQVLPSE--LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + ++ + ++ D+ +++ NK+ + + + ++ + + +A + Sbjct: 67 KISIASKNGDDDNKYNINTIISADDNVEELCNKIMLLIKSSNEDFFYQLDKEALEKAFKL 126 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 AR + G G S+ D+ HK R Y DAH+ + L E DVV+ ++ Sbjct: 127 IRNARNIYMLGIGASSLSAYDLFHKLKRANFNAFFYEDAHLNAEFFNYLTEEDVVIAFSY 186 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SGRT++V V++A A II +T + ++K+AD +I P E +++ Sbjct: 187 SGRTNEVIYPVKIASSKKASIIAVTRKKTNNLSKMADVLITVPNNEELTRMGAITSKYSS 246 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L + D + Q + E N+ T + Sbjct: 247 LIVSDLLYFGAIQKDFENIKENLINTSILTRELK 280 >UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C5BVH6_BEUC1 Length = 299 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 12/278 (4%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 GL P LR +E RI E +L I+ +A S+ + + + +G + Sbjct: 22 GLLPTLRS-------SERRIAEAILDDPQAVSRDTIEQLAARCGTSKTSVTRFCRTIGLA 74 Query: 75 GFRNLRSALEDYF-SQSEQVLPSELAFDEAPQD----VVNKVFNITLRTIMEGQSIVNVD 129 G+ LR AL + ++ +EL PQ+ VV+++ +R + E ++ Sbjct: 75 GYTELRLALAGDVGRRRDESWRAELGSSADPQNPADVVVDELLTANVRALTETVRTLDRA 134 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + + A + DLYG GGS + AD+Q +F RIG A+ ++H + A++L Sbjct: 135 ALAASVDALASAGRIDLYGIGGSGTVAADLQRRFHRIGRVAHAWSESHDALTGAAMLGAS 194 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++H+G TS+V AA+ LA+ GA I +T+ S +A AD ++ + A E Sbjct: 195 DVAIALSHTGETSEVAAALALARDRGATTIAVTNYPGSAVAAAADLVLVTAAHEERARAD 254 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + R Q+ ++D +V VA + +++ +++T V Sbjct: 255 GLAGRHAQMFVVDCLYVLVAGVLHDESQSGLRRTSEAV 292 >UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C246_9CLOT Length = 292 Score = 233 bits (595), Expect = 5e-60, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 130/277 (46%), Gaps = 1/277 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + NG + R +T E R+ E++L ++K +A EA IV++ K Sbjct: 4 IENGRNILATTRFLLPSLTAAEKRVAEFVLASPKEVTRMSLKKLAVRCECGEATIVRLCK 63 Query: 70 LLGFSGFRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 +G SG+ L+S LE + + L+ + ++V +VF + + + + V Sbjct: 64 TIGVSGYAELKSLLETQLQLPAVKEESVRLSTGQGMGEIVARVFELNILNLRRTLEVAAV 123 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 +E A A + + G + C+ +F RIG C A DA + +++A ++E Sbjct: 124 EEYENACEVLSTANKICFFAIGDAMFPCSYASLRFRRIGYDCYADSDADVQIVNACNMKE 183 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 GDV + ++HSGRT V A+ +AK GA ICIT + S + K +D ++ + +T + Sbjct: 184 GDVAIAISHSGRTKQVVEAMRIAKSRGAVTICITKAGKSELTKYSDIVLYNVTTDTTVDK 243 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 + R+ + +LDA ++ V Q + +Q+ Sbjct: 244 EIIARRVAEQAMLDAVYMGVLQKMEANSFARLQEVSE 280 >UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus RepID=Q03CT7_LACC3 Length = 289 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 117/274 (42%), Gaps = 3/274 (1%) Query: 21 RMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR 80 + + ++E E +IV++++ ++ D+A+A S A + + ++ L FSG+ L+ Sbjct: 8 QSTRSELSETEKKIVDYVMAHSQAVLTMSVHDLAKAAGTSPASVSRAARRLQFSGYNELK 67 Query: 81 SALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 L + Q E+ + + K+ +++ E +N + + Sbjct: 68 MQLAADLKGDTNQSDDQEIQKNATLTTIKQKLLIDANQSLRETVDQINEANVDTIINLIH 127 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ-EGDVVLVVTHS 198 Q+ + ++G G S ++ K+ R+G C D ++ + A+ E + +++S Sbjct: 128 QSDRLLVFGVGASYLAAQNIAQKWGRLGYPCHFSDDLNLFLPLAATADVEQTLCWFISNS 187 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP-ETPLLGRNASARILQ 257 G + +V A +LAKK G ++I T + + K AD I + P E + Q Sbjct: 188 GESPEVVLAAKLAKKAGLQVIVTTKLGKNSLTKYADVSIQTSQPMEARNRFAATQSLHTQ 247 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L+D + + + A I ++ A V + Sbjct: 248 FMLIDILYYAYVSRYYDAAKIATDQSKAAVTAYR 281 >UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RDU7_9FIRM Length = 281 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 122/275 (44%), Gaps = 6/275 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + LR ++ +E+ + ++L+ + + +++A S A ++++ K L Sbjct: 3 MSVLVKLRE-YHTLSNSENEVRMYILRNSKKVISMSTQELAAKSYTSPATVIRLCKRLEL 61 Query: 74 SGFRNLRSALEDYFSQSEQVL-----PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+ L+ L E + + ++ ++++KV +I++ +I E + +++ Sbjct: 62 KGYSELKIQLASEIKAFETMNLDVVDQTTFKKGDSLTELIDKVTDISIHSIEETRLLLDY 121 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + AR A DLYG G SN I D +KF+RIG + A Sbjct: 122 EVLLCVARQIMDASIIDLYGVGASNNIAFDAGYKFMRIGKSISCLSLIDRQRIQAINSDS 181 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 +++++SG T ++ ++ +KN + IT S + + L +Y + + E+ Sbjct: 182 SHFAIIISYSGETPEIIEIAKILEKNNVPAVSITGSIQNQLVNLVEYNLFVSSRESNFRN 241 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 +R L +LD +++ LN + + + +T Sbjct: 242 GAIVSRTSTLYMLDLIYITCISLNYDDSAKRLGQT 276 >UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteobacteria RepID=B7LQI9_ESCF3 Length = 301 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 135/289 (46%), Gaps = 7/289 (2%) Query: 7 DSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVK 66 D+ + I + + + +T E RI +++L + I ++A S+A + + Sbjct: 12 DTPMAYSIDIISCITERFMALTATEKRIAQFILDDVPAAVELPIAELARLTQTSQASVTR 71 Query: 67 VSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 ++ LG R L+ L + ++ + D D V ++ + + + + Sbjct: 72 FARALGCKDVRELKVKLAQSLAIGQRFI-----LDVPDLDGVQGIYESIISVLETHRRSL 126 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAIC-ADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 +++ I +A + QARQ G GG + IC ++Q++ R+G+ + DA +M M S Sbjct: 127 DMNAISQAVSWLSQARQILALGTGGGSTICSQEIQYRLFRLGLPVVSQNDALMMRMMCSA 186 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 + DVV+V++ G T ++ + +A++ GA++I IT +P+A+ D ++ E+ Sbjct: 187 VMPQDVVIVLSLGGYTPEIIESAAIARQYGARVIAIT-PAQTPLAEQVDLVLPLLVQESD 245 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 + + +R L ++D +A N QA +++ ++D GA Sbjct: 246 YIFKPTPSRYAMLAMVDVLATELAMANKAQAKDRLRRIKLVLDSHRGGA 294 >UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NYS8_9CLOT Length = 282 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 114/265 (43%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + I + + + + + E ++ ++L+ + + ++ ++A S+A I++ K Sbjct: 1 MSSDILVRDQIFSTYDSLYDAEKKVADYLISHPSEAIEMSVSELASHCDASQATIIRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +G GF L+ L Q E+ + S + +N + + I N + Sbjct: 61 KIGCKGFHQLKIKLAGEQRQQEEQVISNEIDIDQMDKSLNNIMISKVEEIKATFHNFNPE 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ A + G + I D +KF ++G++ + + L++G Sbjct: 121 ELREIVDLIIHANLIEFAAMGDTIPIALDGSYKFNQLGLKAVSSTIWESQEAFSRTLRKG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV ++ SG + + VE+ K NG I IT+ SP+A+L D+++ + E + Sbjct: 181 DVFFAISASGASKRLVKMVEIVKDNGVTTIAITNQSKSPLAELCDHVLLTATREHIFHDQ 240 Query: 250 NASARILQLTLLDAFFVSVAQLNIE 274 + R+ ++++D F+ + + Sbjct: 241 VSFTRMAAMSVIDTLFLLLFSTKWD 265 >UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK55_BACSK Length = 268 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 145/277 (52%), Gaps = 13/277 (4%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +++ ++ E RI ++++ IKD+A +VS A I + + +G + Sbjct: 4 MLQQIQVNYHALSAAEKRIADYVMSAPEELANIHIKDLAAKCSVSVATITRFCRKVGAAN 63 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F + ++ D E+ +++ ++ +I I + ++N D+I +AA Sbjct: 64 FVEFKMSVRDSIRTEEEG-----------GELIAEMESIYKAIIGGSRELINQDDIVQAA 112 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A + ++YG G S +++ + +R+G+R + D+H M+M+ASLL DVVL + Sbjct: 113 TLLENANRIEIYGIGSSGLSGQEMKFRLMRMGMRVDCHIDSHTMVMNASLLTAADVVLAI 172 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG T D++ AV LAK+NGA +I +T+ H+P++++AD ++ S +P+ +A++ Sbjct: 173 SNSGHTVDIQEAVALAKENGATVILLTNHEHTPLSEMADLLLLSFSPKPFYARGFLNAQL 232 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + +LD + +AQ N E+A +KT + Sbjct: 233 SIVHVLDLISLVLAQ-NEERAKAR-RKTLHALSQLKK 267 >UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family n=11 Tax=Escherichia RepID=B7UNF1_ECO27 Length = 281 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 116/271 (42%), Gaps = 1/271 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N I + ++ + + E ++ +++L + ++ +++E SEA IV+ K L Sbjct: 2 NNITVKSLIQSNYPTLHQAEKKVADYILSHAHEVVNYSVTELSEKSHASEATIVRTCKKL 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+ G+ +L+ AL + P F + + + +++ N + + Sbjct: 62 GYQGYYHLKIALAKEVINPDNSYPDNTDFTD-ITSLATFLLKKQAEDLIQSTQFFNAEVL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + + AG SN + +KF ++G++ + + + +A + + D+ Sbjct: 121 ESILKLLANCDTIFFFAAGNSNPLAVYGAYKFSQLGLKTVVHVSPEMQINAAYSMGKRDL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + +++SG T+ + ++ K+ GAK +CIT+ SP++KL+ + + + + Sbjct: 181 AIGISNSGSTNLMVDIFKVVKERGAKSVCITNYIKSPLSKLSTHQLNTAVSDKIFFEAFD 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQK 282 S R+ + ++D + N + Sbjct: 241 STRVPAMGVIDMLVLLFMYKNKAHYEKYRTR 271 >UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBM1_9CLOT Length = 266 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 121/257 (47%), Gaps = 9/257 (3%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ K ++ E I +++++ G+ I D+A+ + S A I + +K +G Sbjct: 1 MDILCEVQRKYNEFSDKEKDIADYIMQHGDKIKNINITDLAKEIGTSGATITRFAKKIGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +++ L EL ++ + + + I + +++ +EI + Sbjct: 61 DSFVDMKIKL--------GSNKVELPINDEDG-IFSYTYQYYNEVIERTKMLIDKEEIFK 111 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 +A+ +YG G S C ++ + LR+G D+H+M++++S++ E D+V+ Sbjct: 112 VVNEIKKAKNIYIYGVGSSGLTCKEMMQRLLRMGFNVHCISDSHMMIINSSIVSENDLVI 171 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T +V ++ +K+NGAKI+ IT S ++K +D P R + Sbjct: 172 GISISGETQEVIHSLRKSKENGAKIVSITGFEGSTVSKYSDIKFIVYNPNFVDRSRFINT 231 Query: 254 RILQLTLLDAFFVSVAQ 270 + + LLD + + + Sbjct: 232 QFSAMYLLDLISMVLLK 248 >UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enterobacteriaceae RepID=A1JQZ2_YERE8 Length = 286 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 130/271 (47%), Gaps = 7/271 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + + EN+ +I + +L + + AE VS++ IVK S+ +G Sbjct: 1 MSILNEITWLLPELAENQKKIAKCILDNPESILSISSSQFAEDAGVSQSAIVKFSQKIGM 60 Query: 74 SGFRNLRSALEDYFSQSE-------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 GF L+ A+ + S++ + L + ++ +++ + K+ + +IME + Sbjct: 61 KGFPALKIAISEELSRNNLFKSYPHKALHNSISPEDSLMVMAQKLAHEKTASIMETTRKI 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 N + A++ + G G+ D+ +K +IG+ D H+ + +A L Sbjct: 121 NFSVFQQVVSLINAAQRVQIVGIWGAGLTAKDLSYKLQKIGIMTLVEADLHVQIAAALTL 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 DV +V++ +GR D+K A +AK GA +I IT S SP+AK+ADY++ S + E Sbjct: 181 TPKDVQIVLSFTGRRKDMKIAATVAKAQGATVIAITGSKVSPLAKIADYVLESISDENEW 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQAN 277 + S+R Q TL D F+++ Q E A Sbjct: 241 RSSSISSRTAQNTLTDLIFLALMQQRKEMAK 271 >UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=Roseobacter sp. GAI101 RepID=B7RLA4_9RHOB Length = 317 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 128/280 (45%), Gaps = 3/280 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR + E ++ ++ A I ++A VS +++ + LG Sbjct: 30 DVISALRRHDGHLATQEQKVANYVKAHLEDISAMTIAELAGHCDVSTPTVIRFCRTLGCD 89 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDV-VNKVFNITLRTIMEGQSIVNVDEIHR 133 GFR + L + S Q L ++ + A D +N++ + + ++ + + R Sbjct: 90 GFREFKLRLAQNLAVSMQYLSADPQPEPADGDTAINQILGGIYASANVMRRQIDPEVLDR 149 Query: 134 AARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A + R G GGS+ + + ++F R+G+ + D++I+ M A+ LQ GDV+ Sbjct: 150 AKSALLKTRHLLFAGIGGGSSNVSQEAANRFFRLGIPSFSTSDSYILQMRAATLQAGDVL 209 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +++ SG + A E+A GA ICIT S + +A + + I PE + + + Sbjct: 210 FLISASGEADAIVGAAEIAGGYGATTICITKSG-TRLANVCNIPILIDLPEDRDIHKPTA 268 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +R + + ++DA +SVAQ + N+++ A + + Sbjct: 269 SRYIHMIIVDALAMSVAQDLAHETTENLRRIRASLTAYHG 308 >UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI5_9CLOT Length = 294 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 124/272 (45%), Gaps = 4/272 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R K + + + ++L I+D+A VSEA + + K +G+ +R Sbjct: 18 IRSKMQDFNPAQKAVANYILNNFYDMEGMPIRDLAVESEVSEATVSRFVKAMGYENYRAF 77 Query: 80 RSALEDYFSQSEQ---VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 + + ++ + +E+ ++ + K+F ++ + + ++++ D + RAA Sbjct: 78 QLEVTKSKAERRKGSLKGYAEVTEEDNAPGICRKIFESNIQALQDTLTVIDYDALERAAD 137 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 +AR+ ++ G S ++ + R+G+ Y D H +++SL+ DV + ++ Sbjct: 138 LIARARRLCIFAQGRSKVTANSIRLRLHRLGIEGTLYTDPHEQAIASSLMGPEDVAVGIS 197 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP-ETPLLGRNASARI 255 GR+ + ++ A G+ II +T ++P+ K AD ++ + E + A + Sbjct: 198 TFGRSRSILVSIRRAAARGSSIIGVTSYQNTPLEKEADILLRTVNNDEADFGSEPSCASV 257 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 Q+ +LD ++ VA+ +A + T + Sbjct: 258 TQMVMLDCLYMLVAKRMEGKAEERFKITRDAI 289 >UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=16 Tax=Enterococcus RepID=C2H8J8_ENTFC Length = 286 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 122/278 (43%), Gaps = 2/278 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + E + E ++ +++ ++AEA +S +V+ SK +GF Sbjct: 5 MSVISRIESMMEDYSSAEKKLANYIIGNIEKVPTMTANELAEASGLSAPTVVRFSKKIGF 64 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 + + + S++ +E+ + NK+ N I E I+ + I + Sbjct: 65 QSLTDFKITISTELQTGIDEGFSDIEANESFYSIKNKLGNNAQVAIKETVDILEEETIQK 124 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A LYG G S+ + D+ K+ R+G D H+++ ++ V+ Sbjct: 125 VVECLETAESVFLYGVGASSLVVEDILQKWSRVGKPIIFEKDIHVLLPQLVSNEKKKVLW 184 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP-ETPLLGRNAS 252 +V++SGR++DV A ELAK +II +T ++P++K+AD ++ + P E + Sbjct: 185 LVSNSGRSTDVVALAELAKNMNIEIIALTQFGNNPLSKIADVLVQTSRPKEITNRSAATN 244 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + + Q +D F N E + ++KT + + Sbjct: 245 SLLAQFATIDIIFYFYMAKN-ESLSEKVKKTREAIQDY 281 >UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus RepID=C2HLD1_LACAC Length = 284 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 126/279 (45%), Gaps = 1/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ K+ + + E + ++++ + +I+ +++ +S A IV+ + +G + Sbjct: 3 NIFSIIKGKKSQLPKKEQLLGDYIIANPENVISSSIQKLSKDTGISTATIVRFCREIGTN 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ L S E E + N + I QS +N + + +A Sbjct: 63 GFSDLKLQLVAAQSSVNNNDYHEFDAGEGIAAIKNTMAARFESAIEATQSGLNDNSVEKA 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 R Y + +YGAG S + +D+ KF+R+G D H+ + + D++++ Sbjct: 123 VRKIYNSSSILVYGAGASGIVASDMYQKFMRVGKNINYISDLHVALAQLASFTSDDLLIL 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP-ETPLLGRNASA 253 +++ G+T++V ++A K G + +T + S +AK AD ++ + E + ++ Sbjct: 183 ISNDGKTTEVSDIQKVADKFGIPTLLLTANPRSFVAKKADLVLLTQDIGEPSIRSGATTS 242 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 I Q+ ++D S ++ ++ ++++ Sbjct: 243 LISQMFVVDVLVFSYVSVHSDEVLKKLKRSNEATAIHKN 281 >UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X148_ENTFA Length = 295 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 121/276 (43%), Gaps = 7/276 (2%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L +R+K+ ++ E +I ++ + +L ++ +A + VS++ + + K +G+SG Sbjct: 6 LDQRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKKIGYSG 65 Query: 76 FRNLRSALEDYFSQSEQVLPSE-------LAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 F+ + + + ++ D+ + KV + ++ + Sbjct: 66 FQEFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNATQFLTK 125 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + Y A+ +G GGS+ + D HKF+R RC D H+ + + L Sbjct: 126 ELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFVTKLTS 185 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 D V + +HSG+T + KK AK+I +T + S +A L+D I E Sbjct: 186 EDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEEGLFRA 245 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 + ++RI LT++D + + N +Q +++K Sbjct: 246 ESLASRISYLTVMDILYTNTMYHNFDQNADSLKKIR 281 >UniRef50_P37767 Uncharacterized HTH-type transcriptional regulator yfhH n=149 Tax=Enterobacteriaceae RepID=YFHH_ECOLI Length = 282 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 130/273 (47%), Gaps = 4/273 (1%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 +R + +G+ +++ ++ ++LL + + + + +A VS++ +VK ++ LG+ GF Sbjct: 6 RIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPA 65 Query: 79 LRSALEDYFSQSEQV----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 L+ AL + + + + +++ D+ + V K+ + ++ + +++H Sbjct: 66 LKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHEC 125 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ L G G S + + K ++IG A D H ++ + D++L Sbjct: 126 VTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPDDLLLA 185 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++G ++ A + + G K++ IT + + + A + + + A E + SA Sbjct: 186 ISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSASISAC 245 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 Q L D F+++ Q ++E A ++ + A+V Sbjct: 246 HAQGMLTDLLFIALIQQDLELAPERIRHSEALV 278 >UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n=48 Tax=Gammaproteobacteria RepID=B5FDJ7_VIBFM Length = 283 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 140/278 (50%), Gaps = 6/278 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ ++ ++ N +I++++L + + + +A + VS++ IVK+++ LGF Sbjct: 1 MNILEKIQNQRSNLSSNGIKILDFILDDPASISSYSSQALAAKVGVSQSSIVKLTQRLGF 60 Query: 74 SGFRNLRSALEDYFS------QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 GF + A+ + + E+ + +++ D++ + K+ ++ + +N Sbjct: 61 KGFTAFKLAIIEDLGRKQAILEPERPIHNKINSDDSSLTIAQKLVQEKTHALIATTNAIN 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 E QA++ + G GGS D+ K L+IG+ D+H+ + +A+ L Sbjct: 121 FSEFELVTTLLNQAQRIQIVGIGGSALTAKDLAFKLLKIGMTALTEQDSHVQIATANTLT 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 + DV +V+++SG ++ A + A GA +I +T + SP+ KLA++ I + A E Sbjct: 181 KQDVQIVISYSGSRKEILMAAQTAMDKGATVIALTSTKKSPLRKLANFCIDTIADERQFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 + S+R Q + D F+++ Q+ ++A + + + + Sbjct: 241 SSSISSRTAQNVITDLLFMTLLQIKSDKAKLLIDEISS 278 >UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=Shigella flexneri 2002017 RepID=D2AGN5_SHIF2 Length = 333 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 124/261 (47%), Gaps = 7/261 (2%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R + T NE +I ++L + + + + +A+ L +S++ IVK ++ LG GF Sbjct: 71 LTKIRNAESEFTGNEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLGAQGF 130 Query: 77 RNLRSALEDYFSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LR AL +S S + L S + D++ + + K+ + + ++ + Sbjct: 131 TELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYA 190 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + + +A + G GGS + D+ K ++IG R D H+ + L++G Sbjct: 191 RLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKG 250 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + +++SG ++ E A+K GA +I IT SP+ +LA + + + + ET Sbjct: 251 DVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSS 310 Query: 250 NASARILQLTLLDAFFVSVAQ 270 + S R Q ++ D FV + Q Sbjct: 311 SMSTRTAQNSVTDLLFVGLVQ 331 >UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus crispatus MV-3A-US RepID=D0DKU0_9LACO Length = 284 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 122/280 (43%), Gaps = 2/280 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + + ++ I + +L+ + K++ S A +++ K L + Sbjct: 1 MNVRDRILENYTELKKSSRIIADAVLENPKILLNKNAKEIGNYTNTSAASVIRFCKQLNY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSEL--AFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G ++ + L + Q+ P ++ D+ +V+ K+ + + +++ ++ Sbjct: 61 KGLKDFQIDLAQSTVKQSQLKPIDMIVTKDDKADEVMTKLRVSLSQNFEDLSKTIDIKDL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A ++R + G G S+ D+ +K +R G D HI + DV Sbjct: 121 QKAVSLIKKSRAVYIAGIGASSFSAKDLFYKLIRSGKTVFYNDDVHIALERIYYSTPKDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++SG T ++ AV+ AKKN I+ +T SP++KLAD + P E+ + Sbjct: 181 MICFSYSGLTQELLLAVKQAKKNKTPIVAVTRKSESPLSKLADINLKLPDHESLMRVGAI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++ Q+ + + ++ ++ + M+ TG +++ Sbjct: 241 NSTFAQMFISNVLYLCSISSDLGEVKQEMEATGKLLEKLK 280 >UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MLD6_SALAR Length = 293 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 129/254 (50%), Gaps = 3/254 (1%) Query: 26 GMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED 85 + E +++I ++L+ L +K +A+ + VSEA IV+ K +G+ G NL++ L+ Sbjct: 18 SLGETDAKIAGYILQQPGLVVQFPVKKLAQEIGVSEATIVRFCKKVGYGGLLNLKADLKR 77 Query: 86 YF-SQSEQVLPS--ELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 ++++ LPS ++ D++ DV K+ + E ++++ + F AR Sbjct: 78 ELLAENDLSLPSSPDIFLDDSRNDVAQKIALTIETSARETIGLLDMKIVKPVVERFLSAR 137 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 + G G S + + K R+G+ A+ D M + + L+ D+V+ +HSG T Sbjct: 138 RVMFVGFGASGLAALEARDKMNRLGIDSDAFTDRFTMTLKLANLKRDDLVVAFSHSGETP 197 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 +V A LA+K GA + ITHS HSP+ +LA+ + P+ G + S RI QL +++ Sbjct: 198 EVVNAFRLAQKKGAYTLAITHSPHSPLNELANTFWLTSGEAGPMQGDSISTRISQLFIIE 257 Query: 263 AFFVSVAQLNIEQA 276 + + N+ + Sbjct: 258 FLCTEITRHNLRDS 271 >UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNS3_LACPJ Length = 292 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 118/274 (43%), Gaps = 2/274 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R ++ + +I ++++ + A +I D+A A+ VS A + + K + FS Sbjct: 12 VLTLIRSYYPNLSVTDRKIADYIIADPIKTAAQSISDLAAAVGVSTATVSRFVKRISFSS 71 Query: 76 FRNLRSAL--EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 FR+ L + Q+ ++ + + FN ++ + ++ ++ R Sbjct: 72 FRDFSRELTAAEPIEQTNAEAFQDVEKQTTFKGIAESTFNSIRSSLDQTSQVMTEADLKR 131 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A AR YG GGS D HKF+R G+ C D + +M A+ + DV + Sbjct: 132 AVELLLNARSIGFYGLGGSAVAALDGYHKFVRTGIPCAHNSDYDMQLMQAAQMNASDVAV 191 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++H+GR + +I +T +SP+AK + S A E ++ Sbjct: 192 VISHTGRNQQTLQVLATLTSQSVPVIALTSFGNSPLAKDSTVAFISVAEEINYRSEGLTS 251 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 I Q++++D+ F+ A + ++ + + Sbjct: 252 LIAQMSIIDSLFLMTAVHGNIEMAESLGRVREAI 285 >UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=Deinococcus RepID=Q1J2N3_DEIGD Length = 290 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 129/268 (48%), Gaps = 6/268 (2%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 M+ + LP + LR +Q T R+++ +L + I +++EA S Sbjct: 1 MATPP--AHLPPVLRRLHLLREEQGAATV---RVIDQILMDPERFLSLTIAELSEAAGTS 55 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 +A +V++ + LGF G++ + L + S + + +A ++ K+F+ + + Sbjct: 56 DATVVRLVQHLGFGGYQEFKLQLSRALAVSRKA-DLTVEPQDASVTILRKIFDSSNTALD 114 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 + +N++ A + AR +L G G S + Q++ LR+G+ C+A D + Sbjct: 115 DTLEHLNLEAFSAAVQAMTLARHIELIGMGASGVVALSGQYRGLRLGLSCRASTDPGTFL 174 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 + SLL+ DV++ V+ SG V A LA++ GA ++ +T +P++K+ + + Sbjct: 175 STCSLLEPTDVLIAVSFSGTRPQVVQAARLARQAGAIVVALTGLGRTPLSKVVHHTLTVS 234 Query: 241 APETPLLGRNASARILQLTLLDAFFVSV 268 AP + +I Q+ +LDA F S+ Sbjct: 235 APGDRYRPEGLATQIPQVAILDALFTSL 262 >UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=Pediococcus RepID=Q03HR4_PEDPA Length = 270 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 127/274 (46%), Gaps = 10/274 (3%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + K ++ E +I +++ I +++ VS A + + K +G+ Sbjct: 1 MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F + L + S + + + D +V + + I +N +++ Sbjct: 61 PDFSQFKLGLAEATSNITENVDNAPLPD--------QVTDFYNQMITGTWKRINQKTLNQ 112 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A + ++G G S ++ + +R+G+ A D+H M +S+S++Q+ D+++ Sbjct: 113 VAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYISSSIMQKDDLLI 172 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++ SG++++V AV +AK++ K++ IT SP+A+++DY + E + ++ Sbjct: 173 VLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINS 232 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ + ++D + Q E Q+T A + Sbjct: 233 QLGVVYIIDILSTMLLQN--ETYKARYQQTVAAI 264 >UniRef50_P46117 Uncharacterized HTH-type transcriptional regulator in aarA 3'region n=5 Tax=Enterobacteriaceae RepID=YARA_PROST Length = 282 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 121/276 (43%), Gaps = 5/276 (1%) Query: 17 APYLRMKQEGMTE----NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L K E + E R+ +LL + A + ++A+A VS A +++ ++ +G Sbjct: 3 MSTLTSKLESLLNRGKGTEQRLARFLLDSRDNFVAMNVAELAQAAGVSSASVIRFTRQMG 62 Query: 73 FSGFRNLRSA-LEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 + G+ + + L D + L L + + ++ K + + I + +++ + + Sbjct: 63 YRGYSDFKVDYLSDEKQYKAESLSGSLNPYDDTEQIIAKSGQMFITAIEKSLELLDPNTM 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A+ +A++ L+G G S + D+ +K +R+ PD H+ + +S + D+ Sbjct: 123 DEIAQKIVEAKRIVLFGVGTSAIVAYDIFYKLIRVNKYALFSPDLHVQLSYSSNVDADDL 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V+ +T G T D+ ++LA K G I +T +LAD ++ E Sbjct: 183 VIAITAKGNTPDINHMLKLANKKGCSTIVLTRFGQDEAVRLADLVLPYFYDEQLFQTGVI 242 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + ++LQ+ + D F L E + +QK + Sbjct: 243 TPQVLQMVVFDTLFFKYLTLTNEDVVLALQKEREAI 278 >UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n=3 Tax=Listeria monocytogenes RepID=C8JWL0_LISMO Length = 273 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 135/274 (49%), Gaps = 6/274 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L + ++++E ++ + +L + +I D+A V E+ IV+ S+ +G Sbjct: 1 MDLLATISSYFPSLSKSEQKVAQLILSNPDEVENLSINDLALMANVGESTIVRFSRKIGL 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +GF++L+ AL Y + +Q + + + + V+ + + + +S + +++ + Sbjct: 61 TGFQDLKIALVKYQTSQKQNI------TDESNEAKDLVYRQFVDGLQDTKSFIEQEKLEQ 114 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AA+ ++A + G S I + ++ R+G + PD H+ + +++++ D+V+ Sbjct: 115 AAKMIHRAEHVYILSVGTSAFIAMQLSNRLKRLGKFVEFVPDGHLQSIYVTMVKKTDIVI 174 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T +V +ELA ++GA ++ +++ +S I+++ D + + + E + SA Sbjct: 175 GISKSGNTKEVIQNIELASQSGAPVVTLSNFINSKISQMGDVSLVASSKEFLSDAGSFSA 234 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + QL LLD + +N + T + Sbjct: 235 EVSQLYLLDTLIKVLVDINPSSYHNIRSLTNKAL 268 >UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus RepID=Q040R4_LACGA Length = 283 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 114/280 (40%), Gaps = 1/280 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L+ + +I ++LL + + + S A +++ + LGF Sbjct: 1 MDLSTKVLNNYPNFKGASKKIADYLLAHPKTFLQEDAQGLGKMTKTSAASMIRFCQQLGF 60 Query: 74 SGFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G ++ + L +E+ + + + P V+ K+ + + + +++ ++ Sbjct: 61 KGLKDFQIQLAQDTPQDNEETIDPIVDHHDNPHIVLQKLLSSIEKNTEQTAHLIDGLALN 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A F A + L G G S+ D+ +KF+R D HI + D + Sbjct: 121 QAINFLKNADRIYLAGVGASSLPAQDLYYKFIRSDKNVVFNQDIHIALERICYSHSTDAL 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 ++ ++SG T ++ + A+KN II +T S SP+ +LAD ++ E L + Sbjct: 181 VIFSYSGLTQEILLMADQARKNHTPIIVVTRSRQSPLVELADVVLGVSTDEKLLRVGAIN 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + ++ + F++ + + ++T I + Sbjct: 241 SLFSEMFVSSVLFLATINQELPRLEERFRETELITNQLKQ 280 >UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillales RepID=Q02YU6_LACLS Length = 273 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 144/274 (52%), Gaps = 7/274 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ K E +T++E +I ++L + D+ +A+ V +A IV+ + LG+ Sbjct: 1 MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SGF +L+ + + ++L ++ N + + E +S +++++ + Sbjct: 61 SGFSDLKIEVAKESYSQKSSNRTDLTL------FFDENENSIIEILHETKSKLDLEQFEK 114 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 +++ +A ++G G S D++ FLRIGV +A +H + +A+LL++ D+++ Sbjct: 115 SSKLISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISGSHFQLQTAALLKKTDLII 174 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG+T ++ ++++AK+ A+II IT S +SP+A+L+D + + E G + + Sbjct: 175 GISLSGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQT-VNEEFFDGGSLTG 233 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +I QL + + + +L +++ + + V Sbjct: 234 KISQLYICEILVKNHERLYKDKSIQSREAIIRAV 267 >UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales RepID=C5EPZ9_9FIRM Length = 295 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 125/287 (43%), Gaps = 16/287 (5%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L ++ + ++E + ++ L +I +A A VS+ +++ K LG G Sbjct: 5 LEYEIKRIYASLRKSEQKAADYYLGYDGPVETMSIAAMARAAGVSQPTVMRFVKALGLEG 64 Query: 76 FRNLRSALEDYFSQSEQVLPS---------------ELAFDEAPQDVVNKVFNITLRTIM 120 F+ + + E++ + P++V +V ++ + Sbjct: 65 FKEFKYQVLKASMGGNGSGMGEEEGGRSEEVLRYGYEISARDRPEEVPGRVVAQSVSYLD 124 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 + ++ I RAA+ ARQ +Y S ++ D+ K + +G C Y D ++ Sbjct: 125 DALKHISPSSIGRAAKLICGARQIAVYYVENSASVAGDLVTKLMYLGFNCIMYNDIYLQH 184 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 +SA L DV + +++SG + + ++LAKK GA I IT+ HS IA AD ++C+ Sbjct: 185 ISAGNLDSRDVAIGISYSGSSKNTVDVMKLAKKKGAATIAITNFEHSLIAGHADILLCTS 244 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + L G +R+ Q ++D ++ + + + ++ I+ Sbjct: 245 SQ-QLLYGNAIFSRMSQTAVVDMIYMGIILRDYGHFTEKLDESSRII 290 >UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=Micrococcineae RepID=A9WVK2_RENSM Length = 346 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 66/292 (22%), Positives = 146/292 (50%), Gaps = 7/292 (2%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 A+ + +G+ L+ + M+ S+I +L++ +IK++A+ S A + + Sbjct: 30 AVDSAVGVVNRLKAQLPEMSGAMSKIARYLIEKPLAPLELSIKELADETGTSAATVTRFC 89 Query: 69 KLLGFSGFRNLRSALEDYFSQSEQ------VLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 +L+G++G+ R + +S+ + D++P+DV++ + N R++ E Sbjct: 90 RLIGYTGYAPFRVGVASDLGRSDARESWKTDIGRAFGPDDSPRDVLSTLMNAHARSLQET 149 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 +++++ + AR + D+YG GGS + ++Q++ RIG+ C + + + S Sbjct: 150 AAVLDLRLMKNLARRIALSEHVDIYGIGGSAVMAKELQNRLYRIGIPCHHCTEVYAGLTS 209 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASL + + ++++GRT + + A GA + ++++ +S +A+ AD+ I + Sbjct: 210 ASLQNSQCIAIGISNTGRTEETIQMLRQAGLAGATTVALSNNPNSTLAESADFQITTSVH 269 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG-AIVDFFSPG 293 E L + SA+ +QL +D ++ +AQ N +A + + A+ PG Sbjct: 270 EQFLQPDDLSAKHVQLLAMDLLYLLLAQENFPRATSQLAASAMAVAPHRRPG 321 >UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escherichia coli O157:H7 str. EC4024 RepID=UPI00017F2FF2 Length = 285 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 131/286 (45%), Gaps = 6/286 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + +G + + +T+ E RI +++ +I +A+A+ V EA I++ K Sbjct: 1 MKTRVGFNTLINTRINELTQTEIRIYQFIKNNRMRFIDMSIAKLADAMNVGEASIIRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD---VVNKVFNITLRTIMEGQSIV 126 LG+ G L++ L + +L + DE + ++ N I E ++ Sbjct: 61 KLGYKGLSELKTTLRLETDTDDTLLSKVTSLDEQTNSMTGIAQQLANNNYFAINETLALQ 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + RAA + A Q YG G S +++F+RI A D H M ++++ + Sbjct: 121 EEQALVRAADYLSNAGQVYFYGIGMSAISVLYAKYRFMRIMANVDALIDNHTMTLNSNNV 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 + DVV+ ++HSG T DV A++ K+ GA I I+ HS +++ AD ++ + P Sbjct: 181 GKKDVVVAISHSGETRDVVDALKRVKEKGAVTIVISKLQHSSLSQYADVVLLTGGTSNPY 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +++ Q ++D F ++ +N N++K + +D + Sbjct: 241 QSDSSTITAAQSFMVDVLFNALLFINR---GGNVEKIISSLDIINK 283 >UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus RepID=D0R5V5_LACJF Length = 272 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ +T++E+++ ++ IK + A +A IV++ K LG+ Sbjct: 1 MEFIQRYNQNKDKLTKSENKLANYIATHTEHVIYDTIKSLGTANNTGDATIVRLCKKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SGF +L+ AL + E + ++ +KV + +I + + ++N + + Sbjct: 61 SGFSDLKIALAQDSMMTTSKSHEEA---QTSSELSSKVL---ISSIEKTEELINPSVLKQ 114 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A +AR+ ++G G S D + +LRIG+ A D HI + A+LL + D+V+ Sbjct: 115 AVSLLAKARRIHIFGLGHSGESARDYERTWLRIGLIANAESDPHIQVQVATLLSKDDLVV 174 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T D ++++AK+ GAKII IT+ SPIA+L D + + E + + Sbjct: 175 GLSLSGHTKDTYDSLKVAKEYGAKIIAITNDLTSPIAQLGDVSLQTSVSE-FMNIGTVAG 233 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ QL L D +LN + ++ A V Sbjct: 234 QVSQLYLCDVLAREYEKLNKVDVDKIKEQALAAV 267 >UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AK74_SEBTE Length = 284 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 123/273 (45%), Gaps = 2/273 (0%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 L+ +T++E +I +++K + D+++ + V +A +++ SK LG+S F Sbjct: 13 KLKSVYNDLTKSEKKIANFIMKNFEKTKTMTSYDISKKVNVGQATVIRFSKKLGYSSFNE 72 Query: 79 LRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 L +++ E +L ++ + K+ N + I + V Sbjct: 73 LINSINKL--DQEDILEKNISLGDDIATTNTKIANQYIDVIKLTLELNPVYVFEEVIEAI 130 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 A + + G G S + D +K R+G+ D H+ S L + D++++++ S Sbjct: 131 IAAERIVVLGIGNSAIVSTDFVNKLARVGMNAFTNLDTHLQFSMISNLGKNDLLILISDS 190 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G T ++ A +LAK+N +II IT + + +D+I+ + + + L ++RI Q Sbjct: 191 GETREIIEAAKLAKQNKTRIISITKFTKNKLHAYSDFILKTASFDINLRLDATTSRITQF 250 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 T++D F+++ + + + + + V Sbjct: 251 TIIDMIFINILKTDFSKYKEIITNSDNAVKLLK 283 >UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0W9_9CLOT Length = 310 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 121/276 (43%), Gaps = 5/276 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L + K ++++E ++ +++ + +K VA+ VSE I++ SK +G G Sbjct: 31 LLFRIATKYMALSKSEKKVADFIKNFNGKAEKLTMKKVAKEAGVSEPSIMRFSKSIGLDG 90 Query: 76 FRNLRSALEDYFSQSEQVLPS----ELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F L+ L E + ++ ++ + K+ I +++ Sbjct: 91 FNELKYCLMKTKKDDEGTMKPLHGFDINREDTIDMIPGKIVMTVENQINSMLESISLKSY 150 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A+ D+Y S + D+ K L +G+ + Y D+++ +SA L DV Sbjct: 151 SDMINCIINAKNVDIYSVENSVSSANDLATKLLYLGINVKMYTDSYLQKISAYNLTSEDV 210 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + +++SG + D ++ AKK GA + IT+ S I K AD +IC+ + + L G Sbjct: 211 AIGISYSGNSKDTVEMIKTAKKRGATTVVITNYKDSKIVKYADILICTSS-DQMLYGDAI 269 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +R +QL + D ++ + + ++ + K + Sbjct: 270 FSRAIQLVINDMIYMGIIHSDYDKYIEILNKNEKAI 305 >UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=Firmicutes RepID=B1R0U2_CLOBU Length = 284 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 127/280 (45%), Gaps = 4/280 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + E E +I +++LK G I ++AEA S+A + + + Sbjct: 1 MEKDKSIIDTIYAEYNSFFEAEKKIADYILKYGTKLIEMTISELAEAAGTSDATVTRFCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 GF +L+ L S+S++ S +E ++ +N + + + + +N Sbjct: 61 KCNMKGFHHLKITLAKELSESQKEDTRVSGDVSEENIKESLNNILFNKIEEMKQTILTIN 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 ++ + A G + + D +KF ++GV A + L+ Sbjct: 121 EEKFKEILQILRNAGIVQFVAVGNTIPVALDGCYKFNQVGVASVANTIWETQIAYTYNLK 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 E DVV+ +++SG + + +E+AK+ GA I IT+S SP+AKL++Y I + E L Sbjct: 181 ENDVVIAISNSGASKRLIDVIEIAKEKGAVTIAITNSDKSPLAKLSNYHIKTATREKLFL 240 Query: 248 GRNASARILQLTLLDA--FFVSVAQLNIEQANINMQKTGA 285 +RI +T+++ F++V + ++ + +++ A Sbjct: 241 EEYYFSRISAMTVIEILFLFMTVGKHDVYKTLSRHEQSIA 280 >UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BCAC Length = 283 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 128/269 (47%), Gaps = 2/269 (0%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 LR ++ ++ E ++ E+++ + +I+ +A+ VS I+++ LG+ GF + Sbjct: 5 KLREARDSLSTKEKQVAEYIIANKKNMQSMSIQSLAQENKVSTTTILRLCHKLGYQGFSD 64 Query: 79 LRSALEDYFSQSE--QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 L+ L + +L ++ +++ + V +KV I +I E ++VN++ A Sbjct: 65 LKIDLISSINHKSYGTLLQEDIDINDSMETVNHKVGLIEKSSIEETCALVNLNAFKLANE 124 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 ++++ +YGAG S + + +++ ++I + D I + L + D+V+V++ Sbjct: 125 LISKSKKIVIYGAGSSGLVAKEFEYQLIKIKKDVNCHLDYSIQFSIVNTLDQNDLVIVIS 184 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 HSG + + LA++ I IT S ++ LA+ ++ + + E ++I Sbjct: 185 HSGENHECIKLLTLARELKVPTIAITKMGQSSVSSLAETVLHTISTEHVSRLIPIRSKIS 244 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGA 285 QLT+++ ++ ++ T A Sbjct: 245 QLTVINMLITNLFIKQYDERIQKQISTRA 273 >UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X566_COMTE Length = 282 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 66/281 (23%), Positives = 131/281 (46%), Gaps = 6/281 (2%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + E +T E R+ + +++ + + ++A VS+ +V+ K LG+ G Sbjct: 1 MLDQVMATLETLTPAEKRVGKLVIENPRRFASMSTSEIASECFVSQPTVVRFCKGLGYGG 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + L S + S + + +V KV + ++ T+ ++ V I RA+ Sbjct: 61 LTQFKQKLRGDRSDGVPYVHSSVDAGDTSFNVALKVVDSSIATLALFRTYVPKISIERAS 120 Query: 136 RFFYQA----RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A R YG+G S + D Q +F R+G A D + +++A+ +EGDV Sbjct: 121 NTLAAAYSEQRSLSFYGSGHSGVVAQDAQLRFSRLGFNSTALNDGYSQVLNAASRKEGDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V+ ++ SGRT ++ +V++AK+ GA +I +T S +P+A + + + E Sbjct: 181 VVALSCSGRTKELLESVDVAKRQGATVIAVTGSG-TPLATMGSIHLATDHLEDIDRYLPM 239 Query: 252 SARILQLTLLDAFFVSVA-QLNIEQANINMQKTGAIVDFFS 291 S+R+L L ++D +VA Q+ + +++T + Sbjct: 240 SSRLLHLVVIDIVATAVALQIGCGRLQDQLERTQNHLRHRR 280 >UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=Ralstonia RepID=B2UK47_RALPJ Length = 280 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 4/240 (1%) Query: 1 MSQSEFDSAL-PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAV 59 MS + S+L P L +R + ++ E ++ +W+L+ + + +A V Sbjct: 1 MSAPQDTSSLAPPSTDLRERIRAARPSLSPAERQVADWVLRQPGTVLSLPVAAIAREAGV 60 Query: 60 SEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTI 119 S+ +++ + +G G + + L + ++ P A +V T+ + Sbjct: 61 SQPTVIRFCRSMGCHGLSDFKLRLAQGNAAHDK--PRGAAAPSNVPRSGTRVLQDTIDAL 118 Query: 120 MEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIM 179 + + + A A + DLYG G S + D Q KF R G+ AY D +++ Sbjct: 119 AAMRDRFDPLALDAAVALVDTAHRIDLYGFGSSGVVARDAQTKFFRYGIPANAYSDPYLV 178 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS 239 MS ++LQ GDVV+ ++ SG +++ AVE ++ G +I +T SP+A LAD ++ + Sbjct: 179 SMSLNVLQAGDVVIAISKSGALPELQTAVERVRELGVHVIAVTA-PGSPLAALADVVLPA 237 >UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HWK5_9FIRM Length = 297 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 71/271 (26%), Positives = 133/271 (49%), Gaps = 4/271 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L + K+ T+ E+ E+ LK + I +VAE S A I K K LGF G Sbjct: 17 LERIILSKKSTFTKTENFYAEYFLKLDDEILNKTISNVAEETESSTASIFKFIKKLGFKG 76 Query: 76 FRNLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 +++ + L +++ + + +++P ++ NK+ ++++ + + Sbjct: 77 YKDFQLNLATNINKNSDDSLLTAITSVNENDSPDEIANKIMAFNIQSMYTLKEDIKNIPF 136 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 ++++ +G GGS I D HKFLR D+H+ + + + + + D Sbjct: 137 ESCLNLIKKSKKIHFFGMGGSATIAYDSYHKFLRTKYMVNYISDSHMQLSACTKMDQNDC 196 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + V +HSGRT +V ++AKKN AKII +T + S + K++D + P+ E+ + Sbjct: 197 IFVFSHSGRTLEVIEVSKVAKKNKAKIIALTGNPKSEMVKISDEAMILPSIESEHGTESL 256 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQK 282 +ARIL LT++D +S+ N+E+ M+K Sbjct: 257 NARILYLTVMDILLISLMYDNVEENKKYMKK 287 >UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=Alphaproteobacteria RepID=C6B6F5_RHILS Length = 287 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 3/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + L+ + ++ +ESRI E ++ + +I ++AE VS + + + LG Sbjct: 1 MDIFSTLQEDKGRLSPSESRIAEIIVNDFEFAVNASIIELAERAKVSPPTVTRFCRRLGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F + + L + L E + P DV + + +++ I Sbjct: 61 ESFSDFKVQLARTAHIGVRYLKPESKSTD-PADVAQDIITKAQNALFLLHRSLDLAAIEA 119 Query: 134 AARFFYQARQRDLYGAGG-SNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A +A +G+GG S+ I ++Q++ R+G+R A D + +M A+ + GDV+ Sbjct: 120 AVSHIAKADMIYAFGSGGNSSMIADELQNRLFRLGLRITASSDHSMQLMMAAAARPGDVL 179 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + + SGR ++ A ELA++ K I +T + SP+AK A+ ++ PE + R S Sbjct: 180 IGSSFSGRNMELVRAFELARQTKVKTIALTQT-DSPVAKAAEIVVPIDLPEGHNIYRPTS 238 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 RI + +D VA +A +++ + G Sbjct: 239 TRIAYIATIDILSSLVAYAVQPKATTTLRRIKQQLVIHRDG 279 >UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=Proteobacteria RepID=Q0BBX6_BURCM Length = 324 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 126/294 (42%), Gaps = 2/294 (0%) Query: 2 SQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSE 61 + + P + + + + E E ++ ++L + +I +A VS Sbjct: 25 AADPTAAVAPPLLDIVARIAECAPELREAERKVAAYILADLARAAHASIGALARDAGVSV 84 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 A + + +K +G R L+ + + ++ L A + V++ + Sbjct: 85 ATVTRFAKAVGCRDVRELKVLVAQAAAVGQRFLVPSDAHPAEDASPASVVYDEIRVALAH 144 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 ++ AA A+ +YG GGS A+ +++ + +R G +Y D+ + Sbjct: 145 NHQLLRNTSFDAAADLLAGAKMVYVYGQGGGSTALADELRFRLVRFGRPVASYQDSLLQR 204 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 M A+ L VV+ ++ SGR ++ + LAK+ GA +I IT SP+AKLAD++I Sbjct: 205 MVAATLSRDAVVVALSVSGRVPELLESCRLAKRYGATLIAITA-PASPLAKLADHLIPVV 263 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 A ET + + +++R + +D VA + ++++ +D G Sbjct: 264 AFETDFIYKPSTSRYAMMMAIDVLVTGVALRLGDAGRESLRRIKHALDAHRGGG 317 >UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=Lactobacillus RepID=Q1WQV4_LACS1 Length = 274 Score = 223 bits (568), Expect = 7e-57, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 119/274 (43%), Gaps = 7/274 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L + ++ E ++ +L+ + I +A+ VS A I + + + Sbjct: 1 MNLLNNIEAIFSTLSRQERKVALKVLQNPQEVQSMNITKLAKKAGVSNATITRFVRRMEC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 S F + + L + S E+ + +KV+ + + ++ D IH Sbjct: 61 SDFHDFKLKLAISAASS-----PEVPVSSESDSMGDKVYEFYQKVLQGTWKQLDTDTIHN 115 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 +AR+ +YG G S + + +R+G+ D+H+M + ++++ DV++ Sbjct: 116 IVHAITKARRVYVYGLGSSGYTAQEFTQRLIRMGIAAFCTVDSHMMFIDSTIVNSDDVII 175 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T DV A LAK+ G KII IT Y SP+ +L+ + R ++ Sbjct: 176 AISQSGNTDDVNVACSLAKQKGTKIISITGFYQSPLIELSTWSAVVKNSNFVDNTRFINS 235 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ + ++D + + + + + M KT ++ Sbjct: 236 QLAIVYVIDIITMELMEK--SEYSSTMNKTVELI 267 >UniRef50_B9Y4T6 Putative uncharacterized protein n=2 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4T6_9FIRM Length = 277 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 118/276 (42%), Gaps = 2/276 (0%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 L+ Q +T+ E I ++ + + +A+ L + ++ I++ SK LG+ FR Sbjct: 4 EKLKQVQNELTQTEKIIADFFQNHSLEARSFTSYQLADRLNIGQSTIIRFSKKLGYRSFR 63 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 L L +E+ + E+ +E K+ + I + Sbjct: 64 ELLEDLSTSL--TEEKVKEEIVVNEGTSSTNQKIIQQYQKMAQLTLEFNPPQVIDQTVSA 121 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +AR+ ++G G SN + +++L++G+ ++HI+ S DV+ +++ Sbjct: 122 LKKARKIIVFGFGNSNLFAEYISNQWLKMGLDSFCSANSHIIFSMLSQFGPQDVLFLISE 181 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T ++ A +A +I +T + + +D ++ + ET + R Q Sbjct: 182 SGETPEILKAARIAGHQNVTVIAMTRIQKNRLHGYSDIVLKTVNYETNTRLNAMTLRCSQ 241 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 L LLD ++++ + + E + ++ ++D+ G Sbjct: 242 LCLLDMIYLNLYKTDFEHYEKIIAESEKLLDYKYNG 277 >UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=Enterococcus RepID=C0X6G8_ENTFA Length = 283 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 126/275 (45%), Gaps = 3/275 (1%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 +R K + ++ RI +++LK + ++A S A + + SK LGF + L Sbjct: 7 IRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGFDSWEEL 66 Query: 80 RSALE--DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + ++ S ++ + +A D++ + KV ++ TI + V+ + RA Sbjct: 67 KLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQALERAIAH 126 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 +A + L G G S+ ++ HKF R G + D+H+M+ + D+++ V++ Sbjct: 127 VKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDILITVSY 186 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T + A E+AK GA +I IT + + L+D ++ P E + S+ Sbjct: 187 SGLTKEALIACEIAKNRGATVIFITSNDGENVRSLSDEVLLVPNNEHLIRVGAISSIASS 246 Query: 258 LTLLDAFFVSVAQLNIE-QANINMQKTGAIVDFFS 291 + + D ++ Q +++ + NM +T +V Sbjct: 247 MAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLK 281 >UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax=Staphylococcus RepID=A5IV96_STAA9 Length = 290 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 124/280 (44%), Gaps = 1/280 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + MT+NE +I +++L +D+A L +S + +++ SK + Sbjct: 3 NVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSKKITDG 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ + Y ++ + EL +E+ + + K+ T R + + +N I + Sbjct: 63 GFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDKTIDQI 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 ++ +YG G S + D+ K RIG+ Q + HI + D V++ Sbjct: 123 CHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSNDSVIL 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 +T++G S++++ V++ II IT + +P+A+ ++ ++ E + ++ Sbjct: 183 ITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHMGATTS 242 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 Q+ +D + LN + + ++ +D + Sbjct: 243 LFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKH 282 >UniRef50_C8QBF9 Transcriptional regulator, RpiR family n=1 Tax=Pantoea sp. At-9b RepID=C8QBF9_9ENTR Length = 297 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 144/272 (52%), Gaps = 5/272 (1%) Query: 21 RMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLR 80 R + E I ++ + +I D+A+ L VS A I KV+K LGF+GF +L+ Sbjct: 19 RTLAPELGRKERSIARFIDDNPETLASMSITDIADYLDVSVASITKVAKKLGFTGFHDLK 78 Query: 81 SALEDYFSQSEQVL--PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF- 137 + + + SE+++ P + + +V ++ + + +++ + A Sbjct: 79 MNIGKHITVSEELIDVPPVSGGEFYTEKIVESTLYNSILALQDALKAIDIAVVKSVAALF 138 Query: 138 FYQAR--QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 +++ + + G GGS +IC D HK L+IG+ + D+H +M+ASL++ GD++L V Sbjct: 139 IHRSENARIVIAGCGGSGSICEDFNHKLLKIGIFSSVFSDSHKQLMTASLMRPGDILLTV 198 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSG+T+D+ ++A GA+ IC+T+ +SP++ ++ + I S P+ G NA+ RI Sbjct: 199 SHSGQTTDIINMTKMANDKGAETICLTNYPNSPLSHISRHAIISSVKNNPITGENATTRI 258 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + L +LDA F +A E + ++ T V Sbjct: 259 VHLNILDAIFTIIASKTSEFSQESLHNTRNAV 290 >UniRef50_D1AYR1 Transcriptional regulator, RpiR family n=2 Tax=Fusobacteriaceae RepID=D1AYR1_STRM9 Length = 281 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 131/275 (47%), Gaps = 5/275 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + LR + T +E I ++L+ + +A+ S + + + K +G Sbjct: 1 MSILVKLRENND-FTSSEKDIAKFLMNNYKNIKKIDARKIAKETFTSVSAVTRTCKKIGL 59 Query: 74 SGFRNLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 GF+ + L + + EQ + S++ + + ++ K+ +++ ++ E + + + D Sbjct: 60 RGFQEFKIDLIEELANLEQQKLEFVNSDIERNNDTRMIIEKLNKLSISSLKETKLLQDPD 119 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I + + + + D YG G S+ +C D Q+KF+RIG C A+ + + A + Sbjct: 120 IIDKVVKLIKKKKVIDFYGIGASHIVCLDAQYKFMRIGKVCNAFGPFDLQYIQAVNSTDD 179 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 ++ +++++SG T D+ E+ + G + + IT + +A A++ + + E+ Sbjct: 180 NLAIIISYSGMTEDIIKISEVLRNKGIETVSITMYGSNKVASNANHNLYVTSKESLKRSA 239 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 +RI L L+D ++ + +N ++ ++ + +T Sbjct: 240 AIYSRISMLNLIDVIYLKYSNMNFDEVSVKINETQ 274 >UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BB20_PARDP Length = 280 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 131/275 (47%), Gaps = 10/275 (3%) Query: 4 SEFDSALPNGIG-LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 + FD A+ G + +R T E R+ E +L + + +I D A VSE Sbjct: 2 APFDGAVLTARGEMLDRIRQSLASFTPAERRVAEAVLDTPSTAITWSISDAARIAKVSEP 61 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAF-----DEAPQDVVNKVFNITLR 117 I++ + L GF + R L ++ Q P LA D+ +V+ +F + Sbjct: 62 SIIRFCRRLDCDGFPDFRLKLAQQLAKH-QPAPQPLARPGSGNDDPLAAMVDDIFQRAGQ 120 Query: 118 TIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAH 177 I E + +++ + A +AR+ D+YG G S + ++ QH+ + + AY D Sbjct: 121 AIEEARRDLDLGALRAAVAMLGKARRVDIYGYGSSGFMASEAQHRLAALAIPAVAYSDPT 180 Query: 178 IMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII 237 + M SA LL GD++ V++ SG TS + + +E+A+K GA ++ I S +A LAD + Sbjct: 181 LQMHSAPLLGPGDLLFVLSFSGLTSYLISNIEIARKAGAPVLAI-SPKGSIVASLADVNL 239 Query: 238 CSPA-PETPLLGRNASARILQLTL-LDAFFVSVAQ 270 A ++ + R+ + + LDA F ++A+ Sbjct: 240 NLNAYRQSSGRMAVPTGRVAPMYVLLDALFAAMAE 274 >UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5E8_9LACT Length = 268 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 125/279 (44%), Gaps = 13/279 (4%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + N + L+ + +++ E ++ ++L+ + IKD++ S A I + Sbjct: 1 MTNNLDLSNRINQNYSLLSKKEKQVAAFILEHKKDIESWNIKDLSRLTETSNATISRFCA 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 L + F ++ + EL+ + P V K+ + + I ++ Sbjct: 61 KLSYRNFNEFKTFVTQ-----------ELSGNPTPLQVPVKIASYYTQLIHSASQLIETK 109 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 +I+ + + + + G G S +++++ +R+G+ D H+M+M A LL++ Sbjct: 110 QINDFVEAIHLSNKILICGVGNSGLSAMELKYRLVRMGLIVDVVTDPHMMLMDAVLLKKY 169 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+++ +++ G+T V A +AKK A + IT+ H+P+ K+AD ++ + + + Sbjct: 170 DLMIAISNYGQTQAVIDACTIAKKEDATVFVITNQNHTPLTKIADQVLFASGRTSIPDEQ 229 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 ++++ +LD L + N +KT +D Sbjct: 230 FINSQLPIHFILDVL--CYVLLENKSYKENRRKTLTAID 266 >UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15N75_PSEA6 Length = 282 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 139/281 (49%), Gaps = 3/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ ++ ++ +E ++ +++L N + +++A + VS++ +VK ++ LG+ Sbjct: 1 MSTFTKIKAIKDTLSNSELKLAKFVLSSSNAVRDLSSQELANVVGVSQSSVVKFAQKLGY 60 Query: 74 SGFRNLRSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+ + + D + SE L ++ +++ + V K+ + + + E +++ Sbjct: 61 KGYPAFKLGVIDALNSTASEGNLHGKITLNDSFKQVSEKLLSSKVAVLTETKNLNEEAAF 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 H+A A++ + G GGS + D +K ++G+ PD H + A+ L E D+ Sbjct: 121 HQAVELLKSAKRILICGLGGSALVGKDFSYKLQKLGMLAIEEPDMHAQLAFAATLSENDL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V ++ SG T ++ V+ AK+N K+I +T +P++ LAD + S A E + Sbjct: 181 VFAISESGSTREIVNVVKQAKQNSCKVITVTRYGATPVSDLADIKLYSVAEEESARLSSI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 AR Q ++D F+++ Q Q ++KT ++V F Sbjct: 241 MARTAQEFIIDILFIAITQS-SRQGRQLLEKTNSVVSDFRQ 280 >UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=Streptomyces RepID=B5GNW3_STRCL Length = 354 Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 5/260 (1%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 +R MT + R+ E + A + +AE SEA +V+ ++LLG+ G+R+ Sbjct: 71 KVRTLVPSMTRSMQRVAEAVADDPAGCAALTVTGLAERTGTSEATVVRTARLLGYPGYRD 130 Query: 79 LRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 LR AL + + + ++++ D+ DVV K+ +T+ + + ++ + A Sbjct: 131 LRLALAGLAAHQQSGRSPSVTADISVDDPLPDVVAKLARDEQQTLADTAATLDTAALAAA 190 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ D+YG G S+ + D+ K LRIG+ A+ D H+ + +A L+ GDV + Sbjct: 191 VSAAATARRIDIYGVGASSLVGLDLAQKLLRIGLIAHAHTDPHLAVTNAVQLRTGDVAVA 250 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 +THSG T DV + A + GA I IT P+ + AD+++ + + E+ L S+ Sbjct: 251 ITHSGSTGDVIEPLRAAFERGATTIAITGRADGPVTQYADHVLTTSTSRESELRPAAMSS 310 Query: 254 RILQLTLLDAFFVSVAQLNI 273 R QL ++D F+ VAQ Sbjct: 311 RTGQLLVVDCLFIGVAQRTY 330 >UniRef50_C8P0W4 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0W4_ERYRH Length = 285 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 121/275 (44%), Gaps = 7/275 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L ++ +++ ES+I +++L+ L I +++E S + I + + + Sbjct: 1 MLLINRIK-NSTQLSDTESKIAQYILENPQLVTQLTIHELSEITYASASTITRFCRKMKT 59 Query: 74 SGFRNLRSALEDYFSQ---SEQVLPSELAF--DEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GF + + L S +E + ++ F + ++V + ++ +++ + + +++ Sbjct: 60 EGFSDFKVKLAGELSSFSITENRIRDDVPFQSNHTSTEIVQSILSLNYQSMSDTYNNIDL 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 +++ R A Y A LYG+G S + D Q+K RI + C + A+ Sbjct: 120 EQLERIAHKIYYAPHIYLYGSGQSLILAQDFQYKLFRIELDCNLETSLGFQSLKANTQPL 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-CSPAPETPLL 247 + L++++ G+ K V+ + I IT ++P+ A ++ SP E Sbjct: 180 DSIALIISYYGQNEHNKTIVDSLVERNIPYILITGPLNNPLCTHASEVVHVSPQEELVTK 239 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQK 282 + S+R +LD + + ++ E+ ++K Sbjct: 240 MASFSSRTSMQLVLDFIYALIFAIDYEKNQKIIEK 274 >UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D858_9CLOT Length = 275 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 125/262 (47%), Gaps = 2/262 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 +P LR + E R E+LL I +A+ VSEA +V+V Sbjct: 3 VPRTPSWQIKLRGVIGSLGAQERRFAEYLLNSFAGIEKEPIAVLAKEAQVSEATVVRVCH 62 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +G+SG + L+ + +++ + + ++ +VF +R + + ++++ D Sbjct: 63 KMGYSGLKELKIVVARE-NETAGSFDGGIG-GQYMDELKERVFMGAIRALQDTMNLIDED 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ +A + A +YG GGS + ++H+ +++G+ Y + +++A +G Sbjct: 121 EVEKATKVLCNANYISIYGVGGSVPVARSLKHQLMKLGIPSNVYNEFQPTIIAAEKYNKG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++HSG +S V A+ +A+ GA ICIT S I +D + + G Sbjct: 181 DVAIGISHSGESSQVVEALRIARGKGATTICITSYGDSAITHCSDVKFFTTSETLLNGGD 240 Query: 250 NASARILQLTLLDAFFVSVAQL 271 N+ ARI Q ++++ +++VA Sbjct: 241 NSLARIAQTSIINLLYLNVALK 262 >UniRef50_B1Y2D5 Glucokinase n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y2D5_LEPCP Length = 616 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 125/267 (46%), Gaps = 1/267 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L +R ++ +E + LL + +I +A+ VS +++ + +GF G Sbjct: 337 LLDDVRAALPRLSTSERLVAGDLLSAPRAWMSDSIARIADRCGVSTPTVMRFCRTMGFKG 396 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + + L S S +V + + + + + N ++ ++E + ++ +A Sbjct: 397 LADFKLRLGAGLSGSTKVAHRPVRAADPTAERMATILNNSISALIELRDRLHPQAFEQAV 456 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + AR+ ++YG G + + QHKF R+G++ A D+ + ++A+ L DV+LV+ Sbjct: 457 KLLANARRIEVYGVGAAALAAEEAQHKFGRLGLQVVARTDSQLQNVTAAFLGPDDVLLVL 516 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG V AV A+++G ++I + S +A+L+D I+ PE +R+ Sbjct: 517 SNSGAVDPVNEAVMRARRSGTRVIGMC-PQRSDLARLSDVILPVDHPEDLQALVPMVSRL 575 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQK 282 +Q ++D +A + N + + Sbjct: 576 MQTVIVDVLVTDLALQRRDHINAALVR 602 >UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=Proteobacteria RepID=A9IGF4_BORPD Length = 307 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 133/287 (46%), Gaps = 5/287 (1%) Query: 8 SALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKV 67 + +P+ + +R +++ ++ E ++ + +L + + +A+ VS A I + Sbjct: 17 AGMPSPRDIVYQIRSRRDALSATERKVADAILDDIAAAAGATVDQLADKAGVSIATISRF 76 Query: 68 SKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 ++ +G R+L+ L + E+ L + +++ T+ + Sbjct: 77 ARSVGCDDTRDLKLKLAQASAVGERFLDPSTPEE---STFYARLYADIEATLRAHLPRFS 133 Query: 128 VDEIHRAARFFYQARQRDLYGAGG-SNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 +AA +AR ++G GG S + ++Q + +R+G AY DA ++ M A+ L Sbjct: 134 EALFEQAAGIVREARMTYVFGMGGASAVLSQELQSRLVRLGYAVAAYSDAVLLRMVAATL 193 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 E DVV+V++ SG T ++ A + K+ GA+I+ +T SP+A LAD ++ ET Sbjct: 194 DERDVVVVLSTSGLTPEILAGTRIVKQYGARIVTLTD-PASPLAGLADVVLPIHTAETDF 252 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + + +S+R L +D +A E +++ +D + G Sbjct: 253 IYKPSSSRYAMLLAIDILATELALARQEATQERLRRIKLALDEYRGG 299 >UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAK0_9FIRM Length = 364 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 115/270 (42%), Gaps = 5/270 (1%) Query: 22 MKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRS 81 K T E I+ +++ N ++D+A S + I + K G+ GF +L+ Sbjct: 88 QKNHSSTPVEKSIINYIINHPNEVIEMTMEDLARETYTSRSTISRFCKKNGYEGFNSLKM 147 Query: 82 ALEDYFS---QSEQVLPSELAFD--EAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 L + + E + L F+ + +++ + + +I+E V+ I + A Sbjct: 148 QLAIELNLFLKDEMSSSTSLLFEKGDNASSIIDNITSQDTYSIIETVRTNPVEHIEKLAD 207 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 R G S I D +F R+G+ C+ + ++ + DVV++ + Sbjct: 208 KILNCRHVVFLGVQFSGIIAYDAHLRFSRLGIPCKYFNTECDILTYSYFADPQDVVIIFS 267 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 +SG+T+ + A + + G + +T +Y++ + +++D + + + P + S+RI Sbjct: 268 YSGKTAVILEAADHIRGKGTFLASVTKNYNNELLEISDLHLYINSIDDPENNLSLSSRIA 327 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 L L+D + + + + +T + Sbjct: 328 ALCLVDMIYAVLVNKKSDNFYDKLMQTNKL 357 >UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UGP6_SINMW Length = 284 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 136/266 (51%), Gaps = 4/266 (1%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 + LR +++ E R+ W+LK +LS ++ +A+A VS+ ++++ + GF GF Sbjct: 13 SSRLRSVLPKLSDAERRVALWMLKNVDLSIRQSMSAIAQATDVSDTTVLRMCRTAGFEGF 72 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 +L+ AL E + S + + ++F + + + +++ +A Sbjct: 73 TDLKLALAQE--PREAIEHSSGEPEASALQAAGRLFRAITQALNDTFGVLDEATFAKALD 130 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 A+ + G GGS + + +R+G+RC A D+ + +M A+L GD+V+ ++ Sbjct: 131 LVANAKHIMVGGVGGSGIVAQAFYQRCIRLGLRCDAPIDSQLQIMHAALTGPGDLVVAIS 190 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 +SG TSD ++ AK GA +CIT + S +A+LAD ++ S + E +A+I Sbjct: 191 YSGITSDPVLVLQEAKARGASTLCITGNSSSALARLADVVLVSVSHEQ--GSEPMAAQIA 248 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQK 282 Q+TL+DA + ++ N E A + ++ Sbjct: 249 QMTLVDALYAALVARNPEPAQLTEER 274 >UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEU1_PETMO Length = 269 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 12/274 (4%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + ++ +T E + +++++ +I +++ SE I +V K +G+SG Sbjct: 2 VTSKIKGIYNSLTNKEKQAAQYIIERPGDVIHYSITELSNWAGTSETTIYRVLKKVGYSG 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++ + L S + +D+ + ++N T+ + + V+ D+I A+ Sbjct: 62 YQKFKLELARELSTPTLD-------SKESKDLFDMIYNRTVNALTDILRQVDRDKITHAS 114 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 +++ Y G S I D KF +G AY D H+ ++ AS L++ DVV+ + Sbjct: 115 EIIMNSKKLLFYAVGRSFPIALDASLKFAALGFASTAYSDPHMQVIVASNLEKDDVVIAI 174 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSG D + ++AK+ GA I +T +SP++K+ + ++ + A E P +RI Sbjct: 175 SHSGVIRDTYKSAQVAKEAGAFTIGMTAGVNSPLSKIVNLVLYTSA-EMPQESEFTVSRI 233 Query: 256 LQLTLLDAFFVSVAQ----LNIEQANINMQKTGA 285 ++ +++ + SVA N E KT Sbjct: 234 GEMFMVELLYNSVASKMSLKNKESRISQAMKTKK 267 >UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCR9_9FIRM Length = 289 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 131/263 (49%), Gaps = 5/263 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + ++++E ++ ++L + +++A +SE +++ ++ LGF G Sbjct: 6 ILTRIESLMPFLSKSEQKLGNYILTHPKDVTDMSTSALSQACDISEPTLIRFTRRLGFQG 65 Query: 76 FRNLRSAL-EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 +++ + L ++ S P ++ +++ ++ K+ + T+ ++ + ++ +++ A Sbjct: 66 YKDFKLHLSANFISNQIDSTPVKVNLNDSAIEIYRKLASFTINSLNSTLNTLDANDLENA 125 Query: 135 ARFFYQA----RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + Y A R+ L G G S + + Q K +R+ ++ + D H+ + + + L++ D Sbjct: 126 TNYIYVAAKQNRKIFLSGMGASTVLIHEFQIKMMRLNIQTIFFEDIHLRLEACANLKKND 185 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 + + T G + + +++A + AKII IT +S IA+ AD + + E L + Sbjct: 186 LFICFTTLGASKENYELIDIAHERKAKIIVITQFGNSQIAEKADIALYTSIIENNLRLAS 245 Query: 251 ASARILQLTLLDAFFVSVAQLNI 273 ++ ILQ ++D F+++A + Sbjct: 246 QTSIILQSMVIDVLFLTIACKDY 268 >UniRef50_UPI00019054B9 hypothetical protein RetlB5_21050 n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019054B9 Length = 259 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 130/263 (49%), Gaps = 6/263 (2%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT ++ ++L +I ++AE SEA +++ + LG+ GF+N + AL Sbjct: 1 MTRALEKVAAFVLADPQTVLYKSITELAEEAESSEASVIRFCRELGYQGFQNFKLALAHE 60 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 + +Q S AP D+V ++ + E + +++ D I R + AR ++ Sbjct: 61 LATLQQPTAS------APGDMVQELVETARTALEETERLLDRDAIQRVSSLLLDARHIEI 114 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G S +++K R+G++ D+H+ M+++ D+ ++++ SG T D Sbjct: 115 FGVAASAITAQYLEYKLARLGIQAHIPRDSHLATMASATASADDLYILISSSGSTIDTLR 174 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 E A GAK+I IT+ SP+A + D+ + + +PETPL G ++I QL ++DA Sbjct: 175 VAESAHARGAKVIAITNRTKSPLAAICDFKLLASSPETPLTGGAFPSKISQLLIVDALAN 234 Query: 267 SVAQLNIEQANINMQKTGAIVDF 289 ++ +L+ + + ++ D Sbjct: 235 TITKLDPARLKTIKETAESVSDR 257 >UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=Firmicutes RepID=A6LRG7_CLOB8 Length = 291 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 110/263 (41%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + + E E +I ++++ + ++A +VSEA IV+ K Sbjct: 15 SVLDKILCIYKSLHEAEKKIADYIINNKERVIEMTVSELALESSVSEATIVRFCKKCDLK 74 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ + + S + + + + + S++N I R Sbjct: 75 GFYDLKIKIAKEMVNLKSSNISNELDSNNIMQSLQNILANKIEELKQTISMMNEGNIKRI 134 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR G + + D +KF ++G+ + + L + DVV+V Sbjct: 135 LEAIKGARIVQFAAVGNTIPVAMDGAYKFNQLGISSVTNTIWETQLAFSYTLTKEDVVIV 194 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +++SG + ++ A +E+A + A I IT+ +SP+A + Y I + E L + +R Sbjct: 195 ISNSGASKELVALLEIANERQATTISITNHENSPVANKSKYHINTSTREKLFLDEFSFSR 254 Query: 255 ILQLTLLDAFFVSVAQLNIEQAN 277 + + +++ ++ + + + N Sbjct: 255 VSAMVVIEILYLLLTRDKEDAYN 277 >UniRef50_C0Q155 Protein rpiR n=2 Tax=Salmonella enterica RepID=C0Q155_SALPC Length = 293 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 5/281 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 NG + + + + E I ++ +I D+A L VS + I KVSK L Sbjct: 6 NGNEVFLLAKTLAPELGKKERAIARFIHDNPQTLSNMSITDIAHYLKVSVSSITKVSKKL 65 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEA--PQDVVNKVFNITLRTIMEGQSIVNVD 129 GF+GF +L+ ++ + +E + + D + + ++ + E ++++ Sbjct: 66 GFTGFHDLKLSISKNINNNEDTVDIPVIPDSEGFIEKIFESTLLNSILALQEALNVIDCS 125 Query: 130 EIHRAARFFYQAR---QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 I A F + + G GGS +IC D HK L+IG+ + D+H +MSASL+ Sbjct: 126 IIKSVAWLFIHKNAEAKIFIAGCGGSASICDDFNHKLLKIGIFSTVFSDSHKQLMSASLM 185 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 ++GD++L V+HSG+TSD+ V +A + GA+ IC+T+ +SP++ + + I S P+ Sbjct: 186 RQGDILLAVSHSGQTSDIIQMVNIANERGAETICLTNYPNSPLSLICRHSIISAVKNNPI 245 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 G NA+ RI+ L +LDA F +A E ++ T V Sbjct: 246 TGENATTRIVHLNILDAIFTIIASKTSEITKNSLLSTRNAV 286 >UniRef50_A6UIG8 Transcriptional regulator, RpiR family n=8 Tax=Rhizobiaceae RepID=A6UIG8_SINMW Length = 287 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 127/281 (45%), Gaps = 3/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + L+ ++ ++++E+RI + LL + +I ++A VS + + + LG Sbjct: 1 MDIFATLQEEKGRLSQSENRIADILLNDFEFAVNASIIELAGKADVSPPTVTRFCRRLGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F + + L + L E E P DV + ++ +++ I R Sbjct: 61 ESFSDFKVQLARTPYVGMRYLKPEPKSQE-PGDVAQDIITKAQNALLLLHRSLDLAAIER 119 Query: 134 AARFFYQARQRDLYGAGG-SNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 AA QA +G+GG S+ I + Q++ R+G+R + D + MM A+ + DV+ Sbjct: 120 AADQLAQAEMIYAFGSGGNSSMIAGEFQNRLFRLGMRITSSSDHSMQMMMAAAARPADVI 179 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + + SGR +++ A LA++ I +T S SP+A+ AD + PE + R S Sbjct: 180 VGSSFSGRNAELVRAFILAREAKVPTIALTQSG-SPVAQAADITVPVDLPEGNNIYRPTS 238 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 RI L LLD VA QA + +++ + G Sbjct: 239 TRIAYLALLDIVASLVAYRVQPQATVTLRRIKQQLVVHRDG 279 >UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=Lactobacillus crispatus RepID=C2KD15_9LACO Length = 279 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 132/270 (48%), Gaps = 5/270 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L+ + + + E +I ++L+ + I +A + VS A I + ++ + Sbjct: 1 MTFLTDLQNRLPDLPQQERKIALFILQDPQFIQSANINQLASTIKVSNATITRFARRVNC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 S F +L+ L + S+ + + + + ++V++ R + E Q+ +++ ++ + Sbjct: 61 SSFTDLKVKLAAAAASSQV---NTITNQDNSKTTAHQVYDFYNRVLSETQNKLDIKQLKK 117 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + A++ YG G S + + LR+G+ A +++ M M++S++ + D+++ Sbjct: 118 IIQLIKSAKRVYFYGIGSSGYTSLEATQRLLRMGISAFAETESNNMFMTSSIISKDDLII 177 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ +G T + A+ELAKKN A ++ +T +SP+A+LAD ++ R ++ Sbjct: 178 AISSTGSTDSLVRAIELAKKNKATVVALTSYDNSPLAQLADIVVGVQDTNYINDARFINS 237 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKT 283 + + ++D + + N + + M +T Sbjct: 238 QFSIMYVIDVITTLLLKNN--KYHDRMTRT 265 >UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, RpiR family n=15 Tax=Firmicutes RepID=Q71VW8_LISMF Length = 268 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 129/278 (46%), Gaps = 12/278 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + E +I +++L+ + IK++AE S + I + + + Sbjct: 1 MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +L+ + + + L +D D+ +V++ + I ++ +I Sbjct: 61 DSFVDLKMRV-----NTAATMVPSLGYD----DLFEEVYSFYHKVIDNTVKLIEPAKIRE 111 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 ++ +A++ + G G S ++ + +R+G+ + D H+M++++S+ + D V+ Sbjct: 112 VVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIITSSITTKEDFVI 171 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T ++ A+++AKKN +K+ T +S + +++D I A++ Sbjct: 172 GISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANS 231 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKT-GAIVDFF 290 + + ++D + + Q E NM+KT + D F Sbjct: 232 QFSIMYVMDIISMMLLQN--ESYRDNMEKTINTVTDEF 267 >UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJG3_9BURK Length = 325 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 130/288 (45%), Gaps = 3/288 (1%) Query: 8 SALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKV 67 SA P + + + E ++ +L + +I +A+ VS A + + Sbjct: 33 SAEPLAFDIVARIAECAPELRSAERKVAALILDDLTGASRASIGALAQQAEVSIATVTRF 92 Query: 68 SKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 +K +G R L+ L + ++ L + A +AP+ + +VF+ + ++ Sbjct: 93 AKAVGCRDVRELKLRLAQAAAVGQRFLERD-AASDAPEPIATRVFDELQTALAHNHQLLR 151 Query: 128 VDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + AA AR ++G GGS A+ +++ + +R+G Y D + M AS + Sbjct: 152 QAPLAEAAAALRNARMIYVFGMGGGSTALADEMRFRLVRLGRPVATYQDGLLQRMVASTV 211 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 VV+ ++ +GR ++ ++A+ GA ++ +T SP+A+LAD++I A ET Sbjct: 212 SRDCVVVALSTTGRVPEMVENCKIARSYGATVVAVTA-PASPLARLADWLIPIVAFETDF 270 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 + + +S+R + LD +A +++ +++ +D G Sbjct: 271 IYKPSSSRYAMMMALDVLVTELAVSQGDESRELLRRMKHALDAHRGGG 318 >UniRef50_C2L0R5 Possible transcriptional regulator RpiR n=1 Tax=Oribacterium sinus F0268 RepID=C2L0R5_9FIRM Length = 314 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 126/276 (45%), Gaps = 9/276 (3%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P ++ M E +I ++L+ + C ++A VS A + + K++G+ Sbjct: 27 SVIPEIKSLYPQMNEAMQKIADYLIDTEDKKCVERASELARRSGVSTASVSRFVKMMGYK 86 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAP-----QDVVNKVFNITLRTIMEGQSIVNVD 129 FR+ R + + + +EL ++ P + +F+ ++R + E I++ D Sbjct: 87 EFRDFRLKIVMEKQEENRQEENELNYNGEPITGDAHSICKTIFSKSVRELEETWGILDFD 146 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A ++AR+ + G G S + + RIG + DAH ++ S++++ Sbjct: 147 TMQTVADLIHEARRIVVIGVGRSKVTMEALYSRLYRIGYPIMMFSDAHEIVNITSIMEKK 206 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+++ V++ G++ V AKK G +++ I+ SP+AK++DY + S Sbjct: 207 DILICVSNFGQSKSVVEGARRAKKRGIQVVGISSIKESPLAKISDYTLFSAYDYNNAQDG 266 Query: 250 NA----SARILQLTLLDAFFVSVAQLNIEQANINMQ 281 N S + QL ++D ++ VA N + + Sbjct: 267 NLFDPSSENLAQLVIVDCLYMLVAHKNKRKNITYFK 302 >UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELR8_PEDAC Length = 280 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 122/275 (44%), Gaps = 5/275 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + L+ + T+ E ++ +++K K VA+ + S A +++++K + + Sbjct: 5 SVVFTLKNQLGDFTKKEKQVARFIIKYPQAVIDSNAKQVADQVGTSAATVIRLAKRVCKN 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G L+ L++ +++ E+ + + + K+ TI + V + A Sbjct: 65 GLPELKERLKNETMVNDKFF-EEIDPADTLEVMKQKMEYRINHTIEQTNRTVKGGAVRNA 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A+ QA YG G S+ + D+Q KF R+G D H +++A + + VV++ Sbjct: 124 AKLVDQADVVYTYGIGASHLVADDLQQKFGRLGKPVAQTQDVH--LLAAEMSKGRGVVVL 181 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS--PAPETPLLGRNAS 252 +++SG T + + A+ ++ IT SP+A+ + ++ L + Sbjct: 182 ISNSGETKETLQLLGAARALDLPVVAITRVLSSPLARQSTVVLAHSDSGEGNQLRSAATT 241 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + + QL ++D + S +L+ E + K+ I+ Sbjct: 242 SLMAQLYVVDLLYYSFLKLHFEDNVDQLTKSRKII 276 >UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VMT8_LACPJ Length = 282 Score = 216 bits (550), Expect = 8e-55, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 119/279 (42%), Gaps = 8/279 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL-- 71 + + + E ++ E +I ++L N + ++A A VS A + + K L Sbjct: 2 TSVLFTIHNRLENFSKAEQKIGRYILDHTNAVIKMSTAELAAATGVSTATVARFGKTLIP 61 Query: 72 -GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G G+ L+ L S +Q L E+ ++ + +K+ TI E ++ Sbjct: 62 DG--GYPALKLRLSAE-STVDQTLYDEINPKDSLDAIKSKLALRITHTIDETNRSLDDAA 118 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + A++ +YG G SN + D + KF+RIG D H++ + + ++ Sbjct: 119 LQAASQLIADKASVYVYGLGASNVVATDFEQKFIRIGKAVIHSQDPHLLAVGMTTQRQNV 178 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL--LG 248 V+L++++SG S+ LA +I ++ + S + KLAD I+ + E Sbjct: 179 VLLLISNSGEKSESIRLANLAHSINVPVIVLSRNATSTLGKLADIILINDDSEENQTARA 238 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ + QL ++D + + + E+ + + + Sbjct: 239 AATTSLMAQLYVVDLLYYTFITNDYERHIKQLVASREAI 277 >UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF8_9LACT Length = 283 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 114/280 (40%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 G + ++ + + +E +I E++L + + A + ++++ +G Sbjct: 3 GNNILGRIKSVLDDLPNSERKIGEYILTYPEETIKMTTSQLGIAAESNSTAVIRLCNRIG 62 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 +GF L+ L ++ +E+ +E + NK+ +++ E S++N +I Sbjct: 63 VNGFTKLKVNLSAEIVSVDESGYAEIEAEETIGTIKNKLLTNAFKSMEETISLMNEFDIE 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 R A +YG G S I ++ K+ R+G D H ++ + + Sbjct: 123 RVIELIESASMVYVYGVGNSRIIAENMVQKWSRVGKIVICPTDNHQLVSMLGAAPKNALF 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +++SG T ++ ++LAKK K + +T + + ADY I + +S Sbjct: 183 FGISNSGETREIIELIKLAKKCSLKTVGLTQFGQNSLTNKADYTIQTVKTIESDSQFISS 242 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + QL +D F S N ++++ ++ + Sbjct: 243 SLHAQLIAIDVLFYSFLSKNYVAGTERIKQSREEMNQYKK 282 >UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YGT9_MOBAS Length = 305 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 4/290 (1%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 +S L +R + M + + + LL+ + + ++K VA VSE ++ Sbjct: 8 GESKALPPSSLIDRMRQELPAMKRADRAVADALLENIDAATRSSVKAVAGRAGVSEPSVI 67 Query: 66 KVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFD-EAPQDVVNKVFNITLRTIMEGQS 124 + ++ +G GF + + L ++ L ++ + DV V+ T + + + Sbjct: 68 RFARHMGCEGFSDFKIRLAQDYAIGRMYLSADYQHPAKTGSDVAGHVYEATSQALASAFA 127 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNA-ICADVQHKFLRIGVRCQAYPDAHIMMMSA 183 + + RAA +R+ +G GGS+A + A+ +++ R+ + A DA+ ++A Sbjct: 128 QRDPAALDRAADLIDGSRRVFCFGVGGSSANVAAEAENRLFRLDLAASATADAYKQRITA 187 Query: 184 SLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA-P 242 + + DV L+ + +GR + + AK+ GA II +T + +P+A AD +I A Sbjct: 188 ATAGKDDVFLMFSVTGRPRSLIESARSAKQCGASIIAVT-TAGTPLAIEADVLIPLIAFD 246 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 E R QL +LD + ++ + + ++ + Sbjct: 247 EEKFFYMPNRGRYGQLFILDCLATLLGGRRMKHISSKLWNARTMLADLNG 296 >UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KYQ0_EXISA Length = 267 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 124/276 (44%), Gaps = 13/276 (4%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + ++ MT +E +I ++L+ N + I D+A A+A S I + K +G Sbjct: 1 MWEQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGS 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + +L+ ++ +++ + L + + I +++ DE+ Sbjct: 61 YSSLKLMMQKTLTETNLPQTTSLEP----------MQRSYIELIQTTAHLIDQDELLAIC 110 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + +R LYG G + + +++++ R+G+ D+H M+M AS++ DVV+ Sbjct: 111 KEITSSRSVHLYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASIVTSEDVVIAF 170 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG + +V A++LAK++G + HSP+A+L DY + + + ++ Sbjct: 171 SNSGESREVVQAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFL--INTQL 228 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L DA ++ + N E + +T +D Sbjct: 229 PLLFTADAVTKTLMETN-EALKAHYLQTLKALDRLK 263 >UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID=C3RHA3_9MOLU Length = 288 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 116/277 (41%), Gaps = 4/277 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + ++ + +E ++ +++L ++ +A+ +AVS+ +++ K +G+ Sbjct: 5 VNFRIKTIYNILRPSEKKVADYILNYCGKLEDLSMTLLAKEVAVSQPTVMRFVKAIGYDS 64 Query: 76 FRNLRSALEDYFSQSEQV---LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F+ + L + + + + D+ D+ K+ + +++ Sbjct: 65 FKQFKLELAKNYDKENNIDILYGFSINTDDKIMDLPGKIVATATSMLENALKSLSLVNYQ 124 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + Q++ +Y S + D+ K + +G + D ++ + AS L + Sbjct: 125 KTVALINQSQHISIYAVENSMGVAHDLMTKLIYLGKSVTCHSDYYLQSIDASNLTRDSLA 184 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG + + +++AK GA+ I I + ++ + + D ++ + + + L G Sbjct: 185 IGISYSGNSKNTVEVLKIAKDAGAQTIAIVNFENTMLTRYGDIVLST-SNDQFLYGDAIF 243 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 +R Q+ L+D ++ V + + + ++ Sbjct: 244 SRTAQIALVDMIYMGVIISDYDNYTKKLDHYSRLIKH 280 >UniRef50_Q1GCY7 Transcriptional regulator, RpiR family n=2 Tax=Rhodobacteraceae RepID=Q1GCY7_SILST Length = 300 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 131/291 (45%), Gaps = 3/291 (1%) Query: 4 SEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAM 63 + +S + L LR E ++ +++ I ++A A+ VS Sbjct: 2 APENSPTQGAVDLISNLRELNGSFAAREQKVADFVSAHLEEISNMTIAELAGAVGVSTPT 61 Query: 64 IVKVSKLLGFSGFRNLRSALEDYFSQSEQVL-PSELAFDEAPQDVVNKVFNITLRTIMEG 122 +V+ + +G GFR + L + S Q L PS+ E V++V T+ Sbjct: 62 VVRFCRSMGCDGFREFKLRLAQNLAVSLQYLAPSQREVPEGGAGAVDQVLGALYATVNVM 121 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 + + + + AA A Q + G GGS + + ++ R+G+ + D++++ M Sbjct: 122 RQQLVPERLDAAAAALAAAGQIVVAGVGGGSTMVAQEAANRMFRLGIPAVSISDSYLLQM 181 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 A+ L +GDV+L+V+ SG ++ +A +A GA ++ I S +A+ A I + Sbjct: 182 RAATLVKGDVLLLVSASGAADEIVSAAAIAGGYGATVVAI-ARPGSRLAQEATVAIEADL 240 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 PE P + + ++R L ++DA +SVAQ N+++ A + + Sbjct: 241 PEDPDILKPTASRYAHLVIVDALAMSVAQARTAATTENLRRIRASLTAYHG 291 >UniRef50_B2UF98 Transcriptional regulator, RpiR family n=2 Tax=Ralstonia pickettii RepID=B2UF98_RALPJ Length = 287 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 139/284 (48%), Gaps = 3/284 (1%) Query: 10 LPN-GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 +P+ + L LR + ++ + + +L LS +++ +A VS IV++ Sbjct: 1 MPSFSVPLLNALRAQLPALSPAQQGVARLILDAPELSLEQSVETLAVRAGVSMPTIVRMC 60 Query: 69 KLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 + LGF G R ++ L + ++ LP + + P V +KV + R + + + ++ Sbjct: 61 QALGFEGLREFKATLAAELAHAQPTLPGHVGRADPPALVASKVIDGATRALAKLRESLST 120 Query: 129 DEIHRAARFFYQARQRDLYGAG-GSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 ++ AA +AR+ D Y AG S+ + D+Q + +R+G+ AY DAH+ ++SA++L Sbjct: 121 TQVDAAAERIARARRVDCYAAGAASSFMANDMQARLMRLGLASNAYFDAHLQLVSAAMLG 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 DVV+ +H GR + ++ A + GA +I IT +P+A+ A + PE ++ Sbjct: 181 ASDVVVAFSHVGRMPYLLESIAYAAEQGACVIAITQ-AGTPLAERAQIALTVDVPEDAVM 239 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 A ++ LT+++ VAQ E M+ ++ S Sbjct: 240 RVGTEAYLVHLTVIEILMTCVAQRRDEMVRSRMRAIQRLLTERS 283 >UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAG5_FUSMR Length = 283 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 120/271 (44%), Gaps = 1/271 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 L + E +I ++L+ I+D++E + S A I + +K +GF F Sbjct: 7 LFLLDQLLPSFSPAEQKIALFILENTFAVIDMTIEDMSEKIGTSVASISRFTKKIGFENF 66 Query: 77 RNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 L+ + F + S + + + + D+ V + E N D++ + Sbjct: 67 YLLKLGIAKEFVNSSNKTISLNVNKNSNATDIYTNVAKTNSAILEESIEYFNTDKMEEIS 126 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A L+ G S + + +KF+R+G++C D H ++ AS+L + DV L+ Sbjct: 127 EIILNANHIYLFAMGASGILAKESWYKFIRLGLKCSMIEDFHSQLLQASILDDTDVALIF 186 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSG DV +E+ + A I IT+ +P ++ D + TP+ S+RI Sbjct: 187 SHSGINKDVLTLLEIINETPAYSIGITNYARTPFSQSVDICLFFSENSTPMDKVGFSSRI 246 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 QL ++++ + ++ +++ I ++ I Sbjct: 247 PQLIIIESLYRILSLKLGKKSKICQERYKQI 277 >UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A459_ENTGA Length = 268 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 105/262 (40%), Gaps = 4/262 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + + ++ + ++ +++++ + +A S A +++ SK LGF Sbjct: 1 MSVVTTIESIKNELSTTDLKLADYIVENLDEIPTMTSNVLAVHSNTSPAAVIRFSKKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 S F + + AL S++ D++ Q NK+ I I++ + + Sbjct: 61 SKFSDFKLALTKDIENRIYNEYSDIQNDDSFQTAKNKILRNNKMIIDATDPILDEQTVQQ 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + A++ +YG G S D++ K+ RIG D +++ + Sbjct: 121 VVDKMFHAKRIYVYGVGTSVLAAEDIRQKWTRIGKTVIFDKDRYLLTQQMKNDGADSLFW 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET----PLLGR 249 ++HSG+ DV + VE+AK G + ++ + + K D I + E Sbjct: 181 GISHSGKNRDVLSLVEIAKSLGMPTLGMSQLGQNQLTKKVDTPIHTARTEDIKNGHYGSG 240 Query: 250 NASARILQLTLLDAFFVSVAQL 271 + ILQ+ +D F + Sbjct: 241 ATHSIILQIVTIDLLFYFYMRR 262 >UniRef50_C9XPJ9 RpiR-family transcriptional regulator n=5 Tax=Clostridium difficile RepID=C9XPJ9_CLODC Length = 250 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 126/258 (48%), Gaps = 11/258 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L + Q+ ++ NE ++ + LK IKD+A S A IV+ + LGF Sbjct: 1 MNLIDKLDINQKKLSTNEISLLNYFLKNSEKINQKKIKDIANETFNSTAYIVRFCQKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SG+ ++ L +S + F ++ D+ V M+ Q+++NV+ I Sbjct: 61 SGYSEFKNFLVFSYSNRNE---RNKEFTKSQSDIFTDV--------MDTQNLINVENIDM 109 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + ++ +G G S +C ++ +F IGV + Y D+ +M ++AS + + D+V+ Sbjct: 110 CLNEIHNSKHIYFFGVGSSRLVCTEMSQRFSAIGVNVKYYDDSTLMYLAASNITKDDLVI 169 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V+ SG T+ V A +AK N K+I +T+ + ++ +AD + +P+ N ++ Sbjct: 170 AVSMSGETAQVIKACNIAKTNQVKVISLTNISVNSLSNIADIKLFVSSPQYNFNSVNYTS 229 Query: 254 RILQLTLLDAFFVSVAQL 271 R+ L+L++ F + Sbjct: 230 RVPALSLMEYMFHKYIEK 247 >UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FU45_9FIRM Length = 277 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 125/279 (44%), Gaps = 10/279 (3%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ + ++ E + ++++ I ++A+ VS A I + + +G Sbjct: 1 MGVLERIEANFVHLSPKEQLLATYIMQESPYFTNITISEMAKETGVSAATITRFCRKVGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +L+ L+ +S A + D+ + V R I + + ++ + Sbjct: 61 ESFVDLKIQLQASEGES--------ASNHQNHDMFDTVSEFYNRIIQRTSELQSEYQLRQ 112 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + QA + +YG G S ++ + R+G+ + D+H+M++S+++ + DVV+ Sbjct: 113 LIQVLSQANRIMVYGMGSSGLTARELAIRLSRMGLPATSETDSHMMIISSTVTRSSDVVI 172 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T DV A+ AK+NGA ++ IT S +AKLAD + + Sbjct: 173 AISNSGETKDVIDALGNAKQNGAILVAITSMKGSSLAKLADETLLVHNSRFVNSEFFVNT 232 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++ L+DA ++ L + NMQKT + + Sbjct: 233 QLPIFFLIDAI--TLMMLENPVFSQNMQKTIQEITSINQ 269 >UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C842_9FIRM Length = 276 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 101/253 (39%), Gaps = 1/253 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + ++E +I +++++ IK +A+A S+A + + ++ Sbjct: 2 ILDTIHGHYNSFFDSEKKIADYIIQHPKEVVNMTIKQLAQACNTSQASVSRFARKCQMDS 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F +L+ L + + ++ + + + + + + ++VD+ Sbjct: 62 FHHLKVNLARDCVNEIEQKSNTISTSDISGS-LETILSNKISELTATIRNIDVDQFSVIL 120 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A+ + G + + D KF IG+ + A L DVV+ + Sbjct: 121 SLIQNAKHVLVCAVGNTVPVALDCMFKFNEIGILTFTSTIWENQVSYALGLDSNDVVIAI 180 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG +S V A + KK G I IT++ S +AK Y I + E L +RI Sbjct: 181 SNSGESSQVLAVCKEMKKRGVPTIGITNNEDSVVAKECVYHIQTSTREKLFLNEFCFSRI 240 Query: 256 LQLTLLDAFFVSV 268 T+++ ++ + Sbjct: 241 SAATIIEILYLFL 253 >UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus RepID=C2KAY2_9LACO Length = 281 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 124/279 (44%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + LA + + + I + K + ++++ S A +V+ + LGF Sbjct: 2 LNLANKISDVYPNLNKTSKLIADVYFKEPRIFLNKNLQELGTITQTSGASVVRFCRNLGF 61 Query: 74 SGFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 GF++ + A ++ + ++ + + ++ P V+ K+ + I + ++ + Sbjct: 62 KGFKDFQIACAQEMPNKQDAMVDTIINTNDEPTSVLYKLQLSLGKNIADIGKTIDHKSLD 121 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A A+Q + G G S D+ +K +R G +HI + + + + D++ Sbjct: 122 AAVDLMRSAQQIYVAGEGASGLAAQDLFYKLIRSGKNVNFVQSSHIALEQVANINKEDIL 181 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +V ++SG T + + A+KN AKI+ +T SP+ +AD +I P+ E L + Sbjct: 182 IVFSYSGLTQEPLLMAKQAQKNNAKIVAVTRIQDSPLKNMADTVITLPSNEKLLRYGAIN 241 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + ++ ++S+ N+E+ N+ M+ T + + Sbjct: 242 SLFAEIFASSLLYLSLISPNLEELNMKMKTTQNLTNQLK 280 >UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XVK6_9LACO Length = 280 Score = 213 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 117/262 (44%), Gaps = 10/262 (3%) Query: 26 GMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALED 85 + E ++ L+ L I ++A V A + + +K +G F + + AL Sbjct: 10 NLPRQEKKVARVTLQKPELVRRMNITELANQAGVGVATVSRFTKRVGCKNFADFKLALVT 69 Query: 86 YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRD 145 + + + ++ + N + + E ++V+ ++ +AA + A++ Sbjct: 70 PDTMQRESEQNVSTPND--------IHNYYQKILAETMAMVSTKQLRQAANLIHGAKRVY 121 Query: 146 LYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVK 205 ++G G S + + +R+G A ++++M ++++ +Q+ D+V+ ++ SG T +V Sbjct: 122 VFGIGSSGYNAQEFAQRLMRMGKPAFAMTESNMMTIASATMQDNDIVIALSVSGSTPEVC 181 Query: 206 AAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFF 265 +AV ++KNGA II +T +S + K++D + + E +++ ++D Sbjct: 182 SAVRDSRKNGATIIAVTAFKNSLLGKMSDLLFQIKSTELVGDYDFINSQFAVTYVIDMLT 241 Query: 266 VSVAQLNIEQANINMQKTGAIV 287 + Q M KT + Sbjct: 242 QMLLQ--FTDFRATMNKTVEAI 261 >UniRef50_B1QVU2 Transcriptional regulator, RpiR family n=9 Tax=Clostridiales RepID=B1QVU2_CLOBU Length = 275 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 116/259 (44%), Gaps = 10/259 (3%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P + E T E I + + + K++++ L VSEA + + SK GF Sbjct: 7 TIIPKIESLYENFTPLEKTIANFFIHNTEKIDFSS-KNISKKLFVSEAALSRFSKKCGFK 65 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+R E F + PS + + +V + + + ++++ +++ R Sbjct: 66 GYREFIFLYEQNFVEK----PSNVTTNYT-----KQVLDTYQELLNKSYALLDEEQMVRI 116 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + F Q ++ +YG G S +++ +F+RIGV ++ D+HIM M+ LL +V+ Sbjct: 117 TKLFNQKKRVYVYGRGSSALAAQEIKLRFMRIGVNIESIVDSHIMKMNFVLLNSDCLVIG 176 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG+T +V ++ AK A + IT + D II E G+ S + Sbjct: 177 ISVSGKTDEVLDSLRAAKSRNATTVLITSRKEKEFEEFCDEIILLAVKEHLDNGKAISPQ 236 Query: 255 ILQLTLLDAFFVSVAQLNI 273 L ++D F+ Q + Sbjct: 237 FPILVMVDIFYAHFLQSDK 255 >UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8A7_MACCJ Length = 285 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 124/279 (44%), Gaps = 4/279 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + T E RI + +++ IK++A SEA IV+ SK LG S Sbjct: 3 SVLGQITKMYDSFTPVEKRIADVVIEYPEKVVNLPIKEIAHLSNTSEAAIVRFSKRLGLS 62 Query: 75 GFRNLRSALEDYFSQ-SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 G + ++ L +++ +P+++ + + + KVFN T++ + + +++ I Sbjct: 63 GIKVVKVELARELHTIADKKVPTKIELTDDEEVMKEKVFNNTIQALYNTEKVISAKVIDE 122 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AA+ A++ ++G G S + D+ K + I D + + GDV+ Sbjct: 123 AAQAITSAKRVMIFGVGNSRVVATDLHVKLMNIDQSAILATDLLSAITLLGHYEAGDVLF 182 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V + + + + + AK+ G KII +T + SP ++AD ++ E + + Sbjct: 183 VTSETSKNKVITDICKYAKEKGIKIILLTQKFSSPAIRMADIVLAMAKEENEINLGYMTV 242 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQ---KTGAIVDF 289 R QLT++D ++ V + NMQ +T I Sbjct: 243 RTAQLTIVDVLYLRVCAYLKDTVLSNMQNLNETRKITHE 281 >UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=Alphaproteobacteria RepID=Q28KP3_JANSC Length = 306 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 112/247 (45%), Gaps = 3/247 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + ++ + +I + +L + + ++A A S++ +VK + LGF Sbjct: 26 LSILTIMQAQLPTLSAGDRQIADTILGDPDRMARLSSGELARAAGRSQSSVVKFCQKLGF 85 Query: 74 SGFRNLRSALEDYFSQSE---QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 SG+++LR A+ + + + S + + K+ + + E SI Sbjct: 86 SGYQDLRLAVTRAAATQKAPNDAVHSSIEVSDDASMTAQKLLASKIHALQETLSINPAKN 145 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + A A + L G G S+ + D +K ++G+ D+HI M ++ L D Sbjct: 146 LDAARDALNGAARVQLSGVGASSLVARDFVYKLQKLGISVLFDADSHIQMAHSATLTPDD 205 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V++ ++ SG + + E A K GA II +T + +P+A +AD +C+ E + Sbjct: 206 VLVSLSQSGFSLETLRIAEAAAKRGATIITVTGLHPNPLADVADKALCTVTDEDQVRSSA 265 Query: 251 ASARILQ 257 ++R Q Sbjct: 266 ITSRDAQ 272 >UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J381_DEIGD Length = 286 Score = 213 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 8/256 (3%) Query: 8 SALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKV 67 A L ++ + RI +++ I ++A V E+ + ++ Sbjct: 11 RASARPPSALARLHAERAQLPPTLERIAAYVVAHPEEVIYQTITELAATAGVVESAVTRL 70 Query: 68 SKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 + LGFSGF + AL SQ++ + F A ++ I + + + Sbjct: 71 CRRLGFSGFHAFKIALSGDVSQAQGAAEATDPFSVA--------ARQAVQAIEGTRQVAD 122 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 + R A+ A + D+ G S + +K R+GV AY D H+ ++A+ Sbjct: 123 PAALERVAQAIAAATRVDVVGQSNSGLSAQFLANKLARVGVPAFAYTDPHLAAVAAATQS 182 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 VV+ T SG T D + LA GA + +TH SP+ + A ++ + +PE+PL Sbjct: 183 PRGVVVGFTRSGSTIDTVQTLRLAASKGACTVAVTHRASSPVTRYAREVLATSSPESPLA 242 Query: 248 GRNASARILQLTLLDA 263 G S+ + Q+ L++A Sbjct: 243 GGALSSLVSQVLLVEA 258 >UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n=4 Tax=Enterobacteriaceae RepID=C2LK66_PROMI Length = 283 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 112/261 (42%), Gaps = 3/261 (1%) Query: 30 NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ 89 E R+ +LL+ + + ++A+ VS A +++ S+ +G+ G+ + Q Sbjct: 18 TEQRLAHYLLENSDNIASMNAAELAQKAGVSSASVIRFSRQMGYGGYPEFKIDYLSEEKQ 77 Query: 90 ---SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 S +L + LA ++ + ++ K ++ I + ++++ I A A++ L Sbjct: 78 QKSSSDILYANLAKTDSTEQIIAKTGHLFTTAIQDSIALLDAATIDLLAEKMISAKRIVL 137 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G G S + +D+ HK +R+ D H + ++ L D+ + VT G T+D+ Sbjct: 138 FGVGASAIVASDIFHKLIRVNKNTLFSADLHAQLAYSANLSADDLAIAVTARGNTADINR 197 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 ++ AK+ G + +T +LA+Y + E + ++LQ+ D F Sbjct: 198 MLKAAKQEGCITVALTRFGQDEATRLANYTLPYFYDEQHSQLGVITPQVLQMVAFDVLFF 257 Query: 267 SVAQLNIEQANINMQKTGAIV 287 L A + K V Sbjct: 258 KYMTLAKGSAEKALLKGRQAV 278 >UniRef50_C6JFN2 Transcriptional regulator n=3 Tax=Clostridiales RepID=C6JFN2_9FIRM Length = 275 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 117/279 (41%), Gaps = 10/279 (3%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + P + T E I ++ + + K+++ L VSEA + + ++ Sbjct: 4 NKHKIIPLIESYYHTFTPLERTIADFFIHNTEE-QDFSSKNISGLLYVSEASLSRFAQKC 62 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF G+R + + + E FN + + ++++ +I Sbjct: 63 GFHGYREFIYEYKQSLAPGPEENIPNFEVSE---------FNTYQELLNKSNALLDKAQI 113 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 R + +YG G S + +++ +F+RIG+ +A D+HIM +++ +L E + Sbjct: 114 TRITNLLVSKPRVYVYGRGSSGLVAQEMKLRFMRIGLNIEAVTDSHIMKVNSVILDENCL 173 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V+ ++ SG+T D+ ++++ A ++GA + +T D + + E G Sbjct: 174 VIGISVSGQTDDIISSLKAAHQHGAYTLLMTARQDKSYQDFCDETLIFASMEHLEYGNII 233 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 S + L +LD + Q++ + + T + F Sbjct: 234 SPQFPILLVLDVLYAHYLQIDRSKKEALHEYTIQTLQPF 272 >UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCD92E Length = 288 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 112/275 (40%), Gaps = 6/275 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + + + E R+ +++L+ + D+A A S+A +V+ K Sbjct: 1 MSEPVSILEKIFSIYPVLFDAEKRLADYVLQNEAKVVDMTVSDLAAACGTSDATVVRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAP---QDV-VNKVFNITLRTIMEGQSI 125 G +GF +L+ + + + +E DV + +F + + + Sbjct: 61 KCGCNGFHHLKINMAKEMATKPSDGAPIVGSNELDCARMDVSLRNIFASKQEELRQTLAE 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 ++ AR G + + D +KF +G+ + P M+ Sbjct: 121 IDPAVFRSVVERIRAARFIFCAAMGNTIPVAMDAAYKFNELGLTAISAPVWENMLAMMHT 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 DV+L ++ SG T D+ V A+ GA I+ +T+ HS IA+++D ++ + + E Sbjct: 181 ATPDDVLLAISASGETKDLMRIVSAARGRGAYIVLVTNQVHSSIARVSDRVLHAVSQERM 240 Query: 246 LLG--RNASARILQLTLLDAFFVSVAQLNIEQANI 278 +S R+ +++A + + + + + + Sbjct: 241 FFRTFSFSSTRLSMTAVIEAVYYMLLSVKRDSSAL 275 >UniRef50_C3RM35 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RM35_9MOLU Length = 284 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 109/271 (40%), Gaps = 6/271 (2%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 + E + +++L+ G + K++A+A S A IV+ + L + G+ + + AL Sbjct: 3 NNFSSVERILGKYVLENGEKVLNMSTKELAKATFTSPASIVRFCRKLEYEGYNDFKIALA 62 Query: 85 DYF-----SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 S + ++ V + + N++ +I ++++E+ Sbjct: 63 AQLQYSRLSNDDINANYPFKGTDSVYTVASNIANLSKESIDITMKNLDLEELRLVVLMIT 122 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 +A+ D+YG G I +D Q+K RIG + + + A+ + +++++SG Sbjct: 123 KAKVIDIYGVSGPLRIASDFQYKMFRIGKDVRISQMINEQLFQAAQSTSEHLAILISYSG 182 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS-ARILQL 258 T +V A ++ + I IT + + K ++ + E + + Sbjct: 183 ETEEVIEAAKILYRRKIPAIAITSFGENRLVKYTQRVLYLNSSEFIYSKIATFSSTLSLH 242 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 LLD + V N E +T ++D Sbjct: 243 LLLDIIYGCVFSKNYEDNLNYKIETDNLIDH 273 >UniRef50_UPI0001BC57B3 oxygen-independent coproporphyrinogen III oxidase n=2 Tax=Fusobacterium RepID=UPI0001BC57B3 Length = 538 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 6/240 (2%) Query: 41 PGNLSCAPAIKDV-AEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSE-----QVL 94 K++ AE + IV+ SK LGF GF + + +L + ++ Sbjct: 281 NKRDVLNSIEKEMKAENIYQGGTNIVRFSKKLGFKGFPDFKLSLSQDIGNRKAESHVNIM 340 Query: 95 PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNA 154 E+ + + + KV + I + E+ +A + +AR+ L G G S Sbjct: 341 HEEIKPTDTFEIIGKKVATENTMAVNNTYEITDFKELEKAVKMISEARKIMLAGVGFSGI 400 Query: 155 ICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKN 214 + D K L +G + D H+ + + + E DV+ V++HSG+T +V + AK Sbjct: 401 VAKDFHFKLLELGKQTLFENDTHMQLSYLATMNENDVLFVISHSGKTLEVFNLAKAAKNR 460 Query: 215 GAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIE 274 KII +T SPI +L D + + ++ S RI QLT++D ++ + N + Sbjct: 461 KVKIITLTSVVQSPIRELGDIKLSTVEMKSDFRATALSPRISQLTVIDMIYIKLMLENED 520 >UniRef50_B3EUN5 Transcriptional regulator, RpiR family n=1 Tax=Bordetella bronchiseptica RepID=B3EUN5_BORBR Length = 303 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 124/281 (44%), Gaps = 2/281 (0%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 + L ++ + ++ + +V +L + ++ +A+ VS IV+ + Sbjct: 3 QHTHNLLQQMQERSPELSPAQKMVVRVILDDPQAAVLATVEQLAQKAGVSMPTIVRTCRS 62 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 GF R+ AL ++ + +L + D+ DV +KV + + ++ E ++V Sbjct: 63 FGFVSVRDFMVALAQSYAATSSLLHRSVLADDGVADVSSKVIHAAISSLSELDRDLDVVI 122 Query: 131 IHRAARFFYQARQRDLYGAG-GSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + + A QA + D Y G S I ++ + R+G+R + D H +MSAS L Sbjct: 123 LDKVAERVAQAERIDCYSVGAASTFIAHELHSRLFRLGLRSNTFFDMHQQLMSASTLGAK 182 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 V V++H GR A A+++GA ++ +T +P+A AD ++ P+ PL Sbjct: 183 GVAFVISHVGRMPYTLEAARYAREHGATVVALTQ-PGTPLAAAADLVLAVSGPQDPLRRV 241 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++ L +++ V +AQ A +Q ++ Sbjct: 242 GTETQLAHLVVIEILMVRLAQKLGPVAVHGLQGFKQLLQQH 282 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes Rep... 318 1e-85 UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales Re... 314 2e-84 UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=... 310 5e-83 UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=A... 309 7e-83 UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Ac... 308 1e-82 UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulat... 308 2e-82 UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=T... 306 6e-82 UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=A... 306 6e-82 UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=T... 301 1e-80 UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=D... 300 4e-80 UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax... 298 2e-79 UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=B... 297 2e-79 UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus ... 296 6e-79 UniRef50_D2AR91 Putative transcriptional regulator, RpiR family ... 295 9e-79 UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Ba... 293 5e-78 UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n... 293 5e-78 UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=H... 291 2e-77 UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulat... 290 4e-77 UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=P... 290 4e-77 UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia... 289 7e-77 UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteri... 289 7e-77 UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=... 289 7e-77 UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus ... 289 8e-77 UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=C... 288 1e-76 UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATC... 286 4e-76 UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=A... 286 7e-76 UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=B... 285 1e-75 UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus ... 285 2e-75 UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=C... 285 2e-75 UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostri... 285 2e-75 UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Se... 285 2e-75 UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=... 284 2e-75 UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. ... 284 2e-75 UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=E... 284 3e-75 UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttle... 283 4e-75 UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax... 283 5e-75 UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=K... 283 6e-75 UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=B... 282 1e-74 UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopo... 282 1e-74 UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putativ... 281 1e-74 UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Sta... 281 2e-74 UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=B... 280 5e-74 UniRef50_P44540 Uncharacterized HTH-type transcriptional regulat... 279 6e-74 UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulat... 279 7e-74 UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostri... 279 9e-74 UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=P... 279 1e-73 UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostri... 278 1e-73 UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostri... 278 2e-73 UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=P... 278 2e-73 UniRef50_B9K581 Transcriptional repressor of rpiB expression; tr... 277 3e-73 UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Ga... 276 4e-73 UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=... 276 7e-73 UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Cl... 275 1e-72 UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=B... 274 2e-72 UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=... 274 3e-72 UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=G... 274 3e-72 UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Ta... 273 4e-72 UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Er... 273 5e-72 UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteri... 273 6e-72 UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=P... 272 8e-72 UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=S... 272 1e-71 UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=P... 271 2e-71 UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator... 271 2e-71 UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonel... 271 2e-71 UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=... 271 2e-71 UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostri... 271 2e-71 UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=C... 270 3e-71 UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=F... 270 4e-71 UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n... 270 5e-71 UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=C... 269 6e-71 UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=A... 269 6e-71 UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator ... 269 7e-71 UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseria... 269 9e-71 UniRef50_Q184N2 Putative phosphosugar-binding transcriptional re... 269 1e-70 UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=... 269 1e-70 UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=G... 268 1e-70 UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oen... 268 1e-70 UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=T... 268 1e-70 UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n... 268 1e-70 UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=S... 268 2e-70 UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_... 268 2e-70 UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=B... 267 3e-70 UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus la... 266 5e-70 UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=B... 266 7e-70 UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium ... 266 8e-70 UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus si... 266 9e-70 UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collins... 265 1e-69 UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor... 265 1e-69 UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU 265 1e-69 UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax... 264 3e-69 UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus ... 264 3e-69 UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=G... 263 4e-69 UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecali... 263 4e-69 UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n... 263 4e-69 UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteoba... 263 5e-69 UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR... 263 6e-69 UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=K... 263 6e-69 UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=B... 263 7e-69 UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=F... 262 9e-69 UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rh... 262 9e-69 UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU 262 1e-68 UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collins... 261 2e-68 UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment)... 261 2e-68 UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Provide... 261 2e-68 UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulat... 261 2e-68 UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n... 261 2e-68 UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=L... 260 3e-68 UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=B... 260 4e-68 UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostri... 260 5e-68 UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp... 259 8e-68 UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=At... 259 1e-67 UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=At... 258 1e-67 UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejue... 258 2e-67 UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales ... 258 3e-67 UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=A... 256 6e-67 UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID... 256 7e-67 UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulat... 256 8e-67 UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=B... 256 9e-67 UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=B... 255 1e-66 UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n... 255 1e-66 UniRef50_P26833 Uncharacterized HTH-type transcriptional regulat... 255 1e-66 UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio ... 255 1e-66 UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=P... 255 1e-66 UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulat... 255 1e-66 UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostri... 255 2e-66 UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=... 254 4e-66 UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, ... 253 6e-66 UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=O... 253 7e-66 UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=S... 253 8e-66 UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=P... 252 8e-66 UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, ... 252 8e-66 UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocace... 252 1e-65 UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 T... 252 1e-65 UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteur... 252 1e-65 UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=K... 252 1e-65 UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus ... 251 2e-65 UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteri... 251 2e-65 UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=... 251 3e-65 UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=B... 250 3e-65 UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=A... 249 6e-65 UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=F... 249 7e-65 UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=M... 249 7e-65 UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=P... 249 7e-65 UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=A... 249 8e-65 UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillac... 249 9e-65 UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales ... 249 1e-64 UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax... 248 2e-64 UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=L... 248 2e-64 UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostri... 248 2e-64 UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium bu... 248 2e-64 UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulat... 247 4e-64 UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=A... 246 5e-64 UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostri... 246 5e-64 UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=St... 246 5e-64 UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enteroco... 246 5e-64 UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n... 246 6e-64 UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp... 246 6e-64 UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteracea... 246 7e-64 UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=B... 245 1e-63 UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus ... 245 1e-63 UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus ... 245 1e-63 UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteoba... 245 1e-63 UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=L... 245 1e-63 UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hy... 245 1e-63 UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus pl... 245 2e-63 UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=L... 244 2e-63 UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family... 244 2e-63 UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n... 244 2e-63 UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus... 244 2e-63 UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus ... 244 3e-63 UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=A... 244 3e-63 UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enteroba... 243 6e-63 UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostri... 243 6e-63 UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacte... 243 6e-63 UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=... 242 9e-63 UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus ... 242 1e-62 UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Ba... 241 2e-62 UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family pr... 241 2e-62 UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=... 241 3e-62 UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=La... 241 3e-62 UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=R... 241 3e-62 UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=F... 240 3e-62 UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=D... 240 4e-62 UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillale... 240 5e-62 UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=F... 240 6e-62 UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales ... 239 7e-62 UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1... 239 8e-62 UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n... 239 8e-62 UniRef50_P46117 Uncharacterized HTH-type transcriptional regulat... 239 1e-61 UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1... 238 1e-61 UniRef50_P37767 Uncharacterized HTH-type transcriptional regulat... 238 2e-61 UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=C... 238 2e-61 UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=A... 237 5e-61 UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escheri... 236 6e-61 UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmone... 236 7e-61 UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=S... 236 7e-61 UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=E... 236 9e-61 UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=S... 236 1e-60 UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, ... 235 1e-60 UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostri... 235 1e-60 UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnoba... 235 2e-60 UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonel... 235 2e-60 UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, ... 234 2e-60 UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=P... 234 3e-60 UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacte... 232 9e-60 UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillu... 232 1e-59 UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=E... 232 1e-59 UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=R... 232 1e-59 UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdema... 231 2e-59 UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax... 231 3e-59 UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID... 231 3e-59 UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=La... 231 3e-59 UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=... 231 3e-59 UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=E... 230 4e-59 UniRef50_C3RI81 Sugar isomerase n=1 Tax=Mollicutes bacterium D7 ... 230 5e-59 UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=P... 230 5e-59 UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collins... 230 5e-59 UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family ... 229 8e-59 UniRef50_C3RM35 Transcriptional regulator n=2 Tax=Bacteria RepID... 229 1e-58 UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=P... 228 1e-58 UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional... 228 1e-58 UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=A... 228 2e-58 UniRef50_C9S176 Transcriptional regulator, RpiR family n=2 Tax=G... 228 2e-58 UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=M... 228 2e-58 UniRef50_B9Y4T6 Putative uncharacterized protein n=2 Tax=Holdema... 228 2e-58 UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=C... 228 2e-58 UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family ... 227 3e-58 UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=L... 227 3e-58 UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostri... 227 3e-58 UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus pl... 227 3e-58 UniRef50_Q38V38 Putative transcriptional regulator with a sugari... 227 3e-58 UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pe... 227 4e-58 UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=S... 226 6e-58 UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acid... 226 6e-58 UniRef50_C6JFN2 Transcriptional regulator n=3 Tax=Clostridiales ... 226 6e-58 UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator... 226 6e-58 UniRef50_C9XPJ9 RpiR-family transcriptional regulator n=5 Tax=Cl... 226 6e-58 UniRef50_A4E6N7 Putative uncharacterized protein n=1 Tax=Collins... 226 9e-58 UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n... 226 1e-57 UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacte... 225 1e-57 UniRef50_D1AYR1 Transcriptional regulator, RpiR family n=2 Tax=F... 225 1e-57 UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus ... 225 2e-57 UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macroco... 224 2e-57 UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium ... 224 2e-57 UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=D... 224 2e-57 UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=S... 224 2e-57 UniRef50_B1QVU2 Transcriptional regulator, RpiR family n=9 Tax=C... 224 2e-57 UniRef50_C8QBF9 Transcriptional regulator, RpiR family n=1 Tax=P... 224 3e-57 UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostri... 224 3e-57 UniRef50_C8P0W4 RpiR family phosphosugar-binding transcriptional... 224 3e-57 Sequences not found previously or not previously below threshold: >UniRef50_Q8R7I8 Transcriptional regulator n=3 Tax=Firmicutes RepID=Q8R7I8_THETN Length = 285 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 138/279 (49%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 + N + ++ +T E ++ +++L+ +I ++AE E IV+ Sbjct: 2 SEQNNGNVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFC 61 Query: 69 KLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 + +G SGF+ + L ++ E + ++F++ +V K+ I ++++ Sbjct: 62 RRIGLSGFQEFKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSM 121 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 E+ +A AR+ YG G S D ++KF+R+G+ A DAHI +SA L + Sbjct: 122 SELEKAVDAIINARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLTD 181 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV + ++ SG T D LAK+ GA++I IT+ SPI +AD ++ + A ETPL Sbjct: 182 KDVAVGISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRS 241 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +++I QL +LD + +VA ++A + KT V Sbjct: 242 GALTSKIAQLHILDILYTAVAVKLKDKAVQELNKTAKAV 280 >UniRef50_C0ZD50 Transcriptional regulator n=32 Tax=Bacillales RepID=C0ZD50_BREBN Length = 288 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 153/287 (53%), Gaps = 1/287 (0%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 +++ P+ + LR ++ E +I +++L+ + +I ++A+ ++A + Sbjct: 1 MNASTPHAPRVLTQLRAIYTQLSGKEQQIADYILEHASEIIHFSITELADQCQCADATVF 60 Query: 66 KVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEA-PQDVVNKVFNITLRTIMEGQS 124 ++ + LGF G++ + AL + +Q + E+ D+ + K+F + TI + Q Sbjct: 61 RLCRRLGFRGYQAFKIALASEVTNPKQTIHQEINLDDDDVSAIAEKIFTANIETIRDTQQ 120 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 I+N DE+ + A + + YG+GGS I D HKF+R G+ C + DAH +MSAS Sbjct: 121 IINKDELMKIVSCLENASRIEFYGSGGSAVIAQDAYHKFMRTGIPCLYHSDAHYQVMSAS 180 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 LL +G VV+ ++HSG D+ AA+++AK+ GAK I IT SP+ +LAD + + + ET Sbjct: 181 LLTKGAVVVGISHSGSNKDILAALQVAKEAGAKTIGITSYGKSPLVRLADMCLYTTSRET 240 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 S+R+ QL+L+D +V+V+ E N+Q + Sbjct: 241 VFRTEALSSRLAQLSLIDLLYVAVSLRRQEDTIANIQHIREAISLKR 287 >UniRef50_UPI0001788119 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788119 Length = 278 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 134/274 (48%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 LR + + +E ++ ++L+ ++ D+A S+A IV++ K +GF G+ Sbjct: 5 LVRLREVYDSLNPSERKVAAFILQEPAEMIQMSVADLAVRSGSSQAAIVRLCKTMGFKGY 64 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 ++L+ + + ++ +++ ++ V N +++I + I+ + A Sbjct: 65 QDLKLKVAGDLQEPLATGYQDIRPNDSISAIIQNVSNNNIQSIRDTMKIMEEGMVEEAVL 124 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 Q+++ ++G G SN I D Q KFLRI C ++PD H+ + SA LL D + ++ Sbjct: 125 ALDQSKRIFMFGVGASNLIGMDAQQKFLRINKVCISFPDPHVQLTSAVLLTPDDAAVCIS 184 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 +SG T +V A +AK+ G K I IT S +++ D + + + E + S+RI Sbjct: 185 YSGETDEVIRAAAIAKEKGCKTIGITKYGDSTLSRSVDIPLYTSSTENEIRSGAMSSRIT 244 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 QL L+D ++ VA N E + + ++ + Sbjct: 245 QLNLIDILYLGVASRNYENSVKYLDESRRAIKRL 278 >UniRef50_C7MQM6 Transcriptional regulator, RpiR family n=5 Tax=Actinomycetales RepID=C7MQM6_SACVD Length = 333 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 150/281 (53%), Gaps = 4/281 (1%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R G+ E R+ + +L+ + +I +VA A SE + + K +G G+ Sbjct: 40 LVRIRSLLPGLARAEQRVAKVVLEDPSSVARRSITEVAMAAKTSETTVTRFCKAIGVGGY 99 Query: 77 RNLRSALEDYFSQSE----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 LR AL +++E + L ++ D+ VV+KV R + E +++ E+ Sbjct: 100 PQLRIALAADTARTEAKSSRDLGGDITADDDLASVVSKVSFADARAVEETAEQLDIAELT 159 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 R +A + D+YG G S + AD+Q K RIG A+ D HIM+ SA++L EGDV Sbjct: 160 RVTELLAEATRVDVYGVGASAFVAADLQQKLHRIGRVSFAWSDTHIMLTSAAVLSEGDVA 219 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++HSG T+D A+ +AK++GA + IT+ SPIA +AD+++ + A ET + Sbjct: 220 VAISHSGATTDTVEALRVAKEHGATTVAITNFPRSPIASVADHVLTTAARETTFRSGATA 279 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 +RI QLT++D F+ VAQ ++++ ++ T V+ G Sbjct: 280 SRIAQLTVIDCLFIGVAQRRMDESMAALEATREAVNGHRLG 320 >UniRef50_A4F6M8 RpiR-family transcriptional regulator n=7 Tax=Actinomycetales RepID=A4F6M8_SACEN Length = 308 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 145/281 (51%), Gaps = 3/281 (1%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R G+ E R+ +L +I +VAEA SE + + K +G G+ Sbjct: 16 LIRIRSLLPGLARAEQRVANIVLADPASVARRSITEVAEAAGTSETTVTRFCKAIGVGGY 75 Query: 77 RNLRSALEDYFSQS---EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +LR AL +++ ++ L S++ ++ + ++ KV + + E ++ + + Sbjct: 76 PDLRIALAADTARTSSRDRDLGSDIGPEDDVRKIIEKVSYADAKAVEETADQLDAETLRS 135 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 +AR+ D+YG G S + D+Q K RIG+ C A+ D H + SA++L+EGDV + Sbjct: 136 LVDAVARARRIDVYGVGASAFVALDLQQKLHRIGLTCFAWSDTHNALTSAAVLREGDVAI 195 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++H+G T++ A++ A K GA +T+ SPI ++AD+++ + ET ++ Sbjct: 196 GISHTGATTETVEALQEAGKRGATTAALTNFARSPITEVADHVLTTAVRETTYRSGAMAS 255 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 RI QLT++D F+ VAQ +++Q ++ T V GA Sbjct: 256 RIGQLTVIDCLFIGVAQRHLDQTKAALEATYEAVGAHRLGA 296 >UniRef50_Q8RD36 Uncharacterized HTH-type transcriptional regulator TTE0211 n=3 Tax=Clostridia RepID=Y211_THETN Length = 282 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 137/278 (49%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R T +E++I +++L+ + ++ ++A A SEA I++ + +G Sbjct: 2 TDVLAVIREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGL 61 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF+ L+ + ++ + L + ++ V+ K+ N + I +++N +E+ + Sbjct: 62 KGFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTK 121 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AA A + D YG S + D KF RI + C AY D H+ + SA L++GDV Sbjct: 122 AAEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAF 181 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T ++ A++ AK+ GA I +T SP+AK AD + + E ++ Sbjct: 182 GISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMFRAGAMAS 241 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 RI QLT++D F+ VAQ ++ T ++ Sbjct: 242 RIAQLTVIDILFILVAQKKYNDVVRYLENTSEVLSMRK 279 >UniRef50_A1HSQ6 Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSQ6_9FIRM Length = 287 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 151/277 (54%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G P +R + +T+ E ++ +++L+ +I ++AE +EA I ++ + +G+ Sbjct: 10 GCLPRIRSIYKALTKAEQKVADYILENAAKVVHLSITELAEVSGSAEATIFRLCQKVGYR 69 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+++ + AL +++ ++ ++ + KVF+ + + I++ + +A Sbjct: 70 GYQHFKIALAGDLYTPAELVYKDVNAGDSMGVIARKVFHDINEGLQDTLKIIDEAALDKA 129 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +AR+ D YG+ GS I AD++++F+R G+ +AY D H+ ++SA+L+Q GD+ + Sbjct: 130 VAAITKARRIDAYGSAGSAVIAADIEYRFMRFGIPVRAYADPHMQIISAALMQPGDLAIA 189 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V+H+G D+ +V +AK+NGA +I IT SP++KLAD +C A ET +AR Sbjct: 190 VSHTGANRDLLDSVAMAKQNGATVIAITSYMKSPLSKLADITLCGSAKETEYRSEAMAAR 249 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++ L ++DA +V V + NM+K + Sbjct: 250 LVHLAIVDALYVGVMLDRQDCIVENMEKIRKAIAIRR 286 >UniRef50_C6WFA6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C6WFA6_ACTMD Length = 304 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 142/282 (50%), Gaps = 4/282 (1%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R G+ E R+ + +L +I +VAE+ SE + + K +G G+ Sbjct: 11 LVKIRSLLPGLARAEQRVAKVVLDNPATVAHRSITEVAESAGTSETTVTRFCKAIGVGGY 70 Query: 77 RNLRSALEDYFSQSEQV----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 LR AL +++ L ++ + + VV KV R + E +NVD + Sbjct: 71 PELRIALAADTARTAARTDRDLGGDIGPGDDLRQVVGKVAFADARAVEETAEQLNVDTLQ 130 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A + D+YG G S + D+Q K RIG C A+ D HI + SA++L DV Sbjct: 131 AVVDAVARAGRVDVYGFGASAFVAFDLQQKLHRIGRTCFAWNDTHIALTSAAVLTGADVA 190 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++H+G T++ A+ +A++ GA + +T+ SPI+++AD+++ + A ET + Sbjct: 191 VGISHTGSTTETVEALRVARERGATTVALTNFPRSPISEVADHVLTTAARETTFRSGAMA 250 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 +RI QLT++D F+ VAQ ++E A ++ T V GA Sbjct: 251 SRIAQLTVVDCLFIGVAQHHVESATSALEATYDAVAGHRLGA 292 >UniRef50_C6Q8T9 Transcriptional regulator, RpiR family n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q8T9_9THEO Length = 282 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 136/278 (48%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ + +E++I +++L ++ +I ++A A SEA IV+ + +G Sbjct: 2 TDILTVIKELEATFKPSEAKIAKYILDNADVVTELSINELARACDTSEASIVRFCRTIGL 61 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF+ L+ + S+ + L + D+ DV+ K+ N + I S+++V I + Sbjct: 62 KGFQELKIKIAVSLSKQTKKLDGGITDDDDVSDVIQKIANFNKQAIDNTISLLDVKSIIK 121 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A + D YG S + D KF RI + C AY D H+ + SA+ L++GDV Sbjct: 122 AVDALSNANKIDFYGVAASGTVAYDAMLKFARINIPCTAYQDTHLQLTSAANLKKGDVAF 181 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T ++ A+E+AK+ GA I +T P+ K+AD + + E ++ Sbjct: 182 GISYSGCTREIVEALEVAKEAGATTISLTKFGQFPLVKVADINLFVSSEEPLFRSGATAS 241 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 RI QLT++D F+ VA+ ++ T + Sbjct: 242 RIAQLTVIDILFILVAKRKYNDVVKFLENTTEALSIRK 279 >UniRef50_B8E0M8 Transcriptional regulator, RpiR family n=2 Tax=Dictyoglomus RepID=B8E0M8_DICTD Length = 281 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 151/277 (54%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ ++E ++E ++ ++L I ++AE + VSEA IV++ K LG Sbjct: 4 SILEKIKEQKESFRDSEEKVANYILARWQEVLHLPITELAERIGVSEATIVRMCKKLGLR 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF+ L+ AL Q + + + + + ++ KVF+ +R + ++++V EI RA Sbjct: 64 GFQELKIALATEKIQPIKTVHQAVQEGDDLETILKKVFSANIRAMESTLNVISVKEIERA 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 ARQ +YG GGS + D QHKF++ G+ AY D+H+M MSAS+L+ DVV+ Sbjct: 124 IDAILNARQLQIYGVGGSGPVALDAQHKFMKTGIPTVAYIDSHMMAMSASILEPQDVVIG 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG + D+ A+ELAK GA I ITH +P+ ++ D + + ET + SAR Sbjct: 184 ISASGSSKDIFEALELAKNRGATTIGITHYAKTPLDRVLDIKLSVSSEETFYRTESTSAR 243 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 I QL+++D ++ VA +++ N++ T + Sbjct: 244 IAQLSIIDTLYIGVALKRLDKMIENLKLTREAIVPKR 280 >UniRef50_UPI000196C77F hypothetical protein CATMIT_02718 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C77F Length = 277 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 129/277 (46%), Gaps = 2/277 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ +TE E I +++++ + + E S A +V+ +K LG+ Sbjct: 1 MSCITRIKEA--SLTETEKEIAQYIIEHPEQVLDDSAMKLGEKTHSSSAAVVRFAKKLGY 58 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SGF L+ L S + + L DE ++NKV + + TI + +++ + Sbjct: 59 SGFPQLKIELAKDLVGSIPEVDNLLHPDEDMATLMNKVHHSQIVTIDKTYHLLSASTLED 118 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + QA+ L+G GGS +C D HK +RIG YPD H+ M S + E D+ + Sbjct: 119 VVKALEQAKHVYLFGVGGSAIVCDDFIHKLMRIGKYACFYPDVHLQMTSVPNMTEEDLAI 178 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++SG T + A + AK+ + IT S ++ + KL D+++ P+ E L S+ Sbjct: 179 FVSYSGETKGIVTAAKWAKEMNIPSVAITQSAYNKLGKLVDHVLTIPSQEQSLRIGAMSS 238 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 R L ++D + + + N E+ + T I+ Sbjct: 239 RYSSLIVVDLLYYGLVKRNKEKYAQKIINTRRIIQEM 275 >UniRef50_C4L752 Transcriptional regulator, RpiR family n=4 Tax=Bacillales RepID=C4L752_EXISA Length = 282 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 143/279 (51%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + +R +++ E RI +++LK I VA+ L V+E+ + + + +G Sbjct: 3 TMNGTARIRGAYSTLSKKEQRIADYILKQPEQIIHHTINQVADDLDVAESTVFRFCQRVG 62 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F G++ L+ AL Q + ++ + ++ K+F+ +TI + I+ + Sbjct: 63 FKGYQALKIALASDVVAPLQDIHEDITETDTALEIAEKIFSTNGKTIESTRQILEGVSLE 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A F AR+ + +G+GGS + D HKF+R G++ A ++H+ +MSAS L DV Sbjct: 123 KAVELFLGARRIEFFGSGGSAVVALDAYHKFVRSGLQVSAMLESHMQLMSASQLTTADVA 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +V++HSG + + +L K+ G +I IT+ SP++K+AD + + + ET + Sbjct: 183 VVISHSGASKETLDIAKLLKEKGVPMIAITNYAKSPLSKIADVSLYTVSQETAFRSEALA 242 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +RI +L+L+DA F +V E A ++Q+ + Sbjct: 243 SRIAELSLIDALFTAVMMRRGEAARTSLQQMREAISMRR 281 >UniRef50_C0ZJF9 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJF9_BREBN Length = 297 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 143/287 (49%), Gaps = 1/287 (0%) Query: 5 EFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 + + L +++ T++E ++ +L+ + ++ D+AE V E + Sbjct: 11 PLTATITKTNTLL-HIQSLLPSFTKSEQKVAHIVLQQTDSVIYSSVIDLAEKAGVGETTV 69 Query: 65 VKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 ++ + +GF G++ + AL + L E+ D++ + +KV + I + + Sbjct: 70 LRFCRKIGFHGYQEFKLALAQELVNPVKNLHGEVGEDDSLDIITHKVTATNQQAIGDTSA 129 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 + ++++ R +A YG G S D ++ FLRIG+R A+ ++H+ M+A+ Sbjct: 130 LFQLEQLERCVDLLQKANTIHFYGVGTSAVTAQDAKYTFLRIGLRVDAFNESHLQAMAAA 189 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 L GDV + ++ SG T D ++++AK+ GA IC+TH SPI +AD + + A E Sbjct: 190 TLGPGDVAIGLSVSGSTKDTIDSLKVAKQAGAACICLTHYRRSPITNVADITLLTAAQEG 249 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 PL G + +A+I QL +LD ++ N E+A + ++T V Sbjct: 250 PLQGGSLAAKIAQLHVLDVISTTITMRNKEKALLYKERTAKAVLERK 296 >UniRef50_D2AR91 Putative transcriptional regulator, RpiR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AR91_STRRD Length = 299 Score = 295 bits (757), Expect = 9e-79, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 2/286 (0%) Query: 7 DSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVK 66 D P + L +R +T I +L + I + + SEA IV+ Sbjct: 3 DQDGPTPVNLVATVRAVLPSLTPAAQAIARLILDDPGMVARSTITEFSAVSGTSEATIVR 62 Query: 67 VSKLLGFSGFRNLRSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 ++ LGF+G+ LR AL + + E+++P +L D+ DV+ KV + + + Sbjct: 63 TARALGFAGYSQLRFALAAAVAREEPERLVPGDLGPDDPLTDVIAKVTRAESEALADTAA 122 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 +N D + AR+ D+YG G S + AD+ K +RIG A+ DAH+ + SA+ Sbjct: 123 QLNPDRLGAVVEAMTAARRVDVYGVGASGLVAADMAQKLMRIGRSSHAFTDAHLALTSAA 182 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 LL EGDV + V+ +G T DV A + +A+K GA + IT++ S +A+LA++++ S ET Sbjct: 183 LLGEGDVTVGVSCTGETPDVIAPMRVARKAGATTVAITNNPRSSLAELAEHVLVSAGRET 242 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++RI QL ++D FV +AQ E ++ ++ T +D F Sbjct: 243 AFRPGALASRISQLLIVDCIFVGIAQRTFETSDAALRATRGALDEF 288 >UniRef50_C6J1X3 RpiR family transcriptional regulator n=2 Tax=Bacillales RepID=C6J1X3_9BACL Length = 289 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 133/278 (47%), Gaps = 1/278 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + E ++ E ++ E++L+ I ++A A +S + + + K F G Sbjct: 4 ILHAVSSHLETLSPQERKLGEYILESPATVIHQGITELANACGISPSTVTRFCKTFHFKG 63 Query: 76 FRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 F + + L + + + ++ Q +V + L +I + +++++++ RA Sbjct: 64 FPDFKMKLASELAHKPAENHYQDIIAGNDLQKIVEAMEANHLASITDTTRLLDMNQLSRA 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +A++ DLYG S+ + D K +RIG C A+ D+H+ + SAS L EGDV L Sbjct: 124 VEALCRAKRIDLYGVATSSIVAQDFYQKLVRIGKNCTAFADSHMQITSASSLGEGDVALA 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +++SG T + A+ AK +GA + +T + +A LAD + S + E + + ++R Sbjct: 184 ISYSGETPETIDALRCAKDSGATTLSLTQYSSNSLASLADIALFSSSLEEGMRRGDMASR 243 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 I QL ++D F + L + ++ + V + Sbjct: 244 IAQLHVIDILFTGMVSLEFQDFIPKLESSYQNVQIYRK 281 >UniRef50_A8FJ30 Possible RpiR family transcriptional regulator n=51 Tax=Bacillus RepID=A8FJ30_BACP2 Length = 285 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 144/276 (52%), Gaps = 1/276 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R G+ I E + +I ++A+ A SEA I ++ K LGF GF Sbjct: 9 IEKIRAASRGLPPKLKAIAEHITSEPRDIIHLSIVELAKKTASSEATIFRLCKRLGFEGF 68 Query: 77 RNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++L+ A+ Q++ + E++ D+ + KVF + + + ++N +++ +A Sbjct: 69 QDLKIAIAQEIDQTKPNYVDEEMSLDDDMAVFMQKVFQTNISALKDSFQLLNPEDVEKAI 128 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + ++A++ + YG+GGS I D HKF+R G+ C + D+H MSA LL + V+ + Sbjct: 129 QIIHEAKRLEFYGSGGSGLIATDAFHKFMRTGINCIVHTDSHFQAMSAGLLDQHSTVIGI 188 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSGR D+ A++ AK GAK I IT SP+++LAD + + ET SAR+ Sbjct: 189 SHSGRNKDLLDAMKTAKSKGAKTIGITSYQRSPLSQLADVTLYTATQETAFRTEAMSARL 248 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 QLT++D + ++A L ++ N+++ + Sbjct: 249 AQLTVIDVLYFALAHLRQQETITNLKQMRETISQKR 284 >UniRef50_C6XNZ1 Transcriptional regulator, RpiR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNZ1_HIRBI Length = 297 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 139/277 (50%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R++++ + + S I +++L N ++ ++AEA SE ++ + + LG S Sbjct: 20 NVISRIRIRKDSLGPSTSTIADYVLGHANAVVGMSVTELAEATGTSEGSVINLCRQLGLS 79 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF+ L+ +L + Q + +L + V K+F+ + E SI++ D I A Sbjct: 80 GFQQLKLSLAQEVVRPVQFIHEDLQPSDDTSTVCQKMFHAGSEALRETLSILDPDAISMA 139 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A + ++YG G S I D Q++ LRIG+ + D+HI +SAS VL Sbjct: 140 VDVIRSADRVEIYGIGSSAPIAEDAQYRMLRIGLDAKVVVDSHIQAISASRTGPNVAVLT 199 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG T + AA LA+ GAK I IT+ SP+ AD + + A ET ++R Sbjct: 200 ISHSGSTHETLAATRLARDAGAKTIIITNFASSPLQAYADVKLYTMARETKFRSEAMTSR 259 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 I QL +LD ++A + E+A +++T ++ Sbjct: 260 IAQLCILDVLIAALALDDYERATTVLRQTSEVLSIKR 296 >UniRef50_Q97MK5 Uncharacterized HTH-type transcriptional regulator CA_C0191 n=5 Tax=Clostridia RepID=Y191_CLOAB Length = 283 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 130/277 (46%), Gaps = 2/277 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 ++ + +E +I E++L +IK++A S++ +V++ K+L + G+ Sbjct: 5 LIRIKEIINDLNPSERKIAEYILNNSKAISDLSIKELAGKSGSSKSAVVRLCKILNYKGY 64 Query: 77 RNLRSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 + R A+ E+ +++ + ++ + ++I +++ + + +A Sbjct: 65 KEFRIAIAKDTVNVDKEENRYTDINPKDDLHTIIKNISYNNKKSIDNTMEVLSEELVEKA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + +A + D YG G S + D KF+RI +A PD H+ + AS L++GDV + Sbjct: 125 SEAISKAYRVDFYGIGASYIVAMDAFQKFMRINKNVRATPDTHLQVEFASNLKKGDVAVA 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++G T D +++ AK+ GA I +T + I+ L D + +PE S+R Sbjct: 185 ISYTGETKDTFESIKAAKEAGATTISVTKFGSNSISDLCDINLFVLSPEITFRSGAMSSR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 I QL ++D F SVA E+ ++ T Sbjct: 245 IAQLNVIDILFTSVAGRMFEEVKEFLENTRKSTRVKR 281 >UniRef50_C6D7K6 Transcriptional regulator, RpiR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7K6_PAESJ Length = 284 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 2/278 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 I + + T E + +++L+ + +I D+AE V EA I + K L Sbjct: 2 REISITSTIHSHYNRFTATEKKTADYILEHADAVVYMSITDLAEGCGVGEASIFRFCKAL 61 Query: 72 GFSGFRNLRSALEDYFSQSEQV--LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 GF G++ + AL S ++ L ++ + +D V+K + + E ++ +D Sbjct: 62 GFKGYQQFKIALAHSISADNEIPQLSGQVKIQDTLEDAVSKTLQSNINALNETFKLIQLD 121 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I+RA ++ + YG G S + +KF+RI + D+H MSA+L+ E Sbjct: 122 SINRAIDLLIRSDRFIFYGVGSSLMTAMEANNKFMRITNKTGCSVDSHQQAMSAALMGER 181 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV +++++SG T D + AK+ GA II IT SP+ +D + A E PL G Sbjct: 182 DVAIIISYSGSTKDSIEVAKKAKERGAAIIVITRFVKSPLTSYSDITLLCGANEGPLQGG 241 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + SA+I QL LLD +V + E + +N + T A V Sbjct: 242 SLSAKIAQLYLLDVLYVEYFKRTYEASIVNKENTSAAV 279 >UniRef50_C0CSK7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSK7_9FIRM Length = 282 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 148/275 (53%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 +R + +T E +I ++L+ + I ++AE VS+A +V+ + LG+ Sbjct: 5 SCKEIIRGRMNYLTNTERKIANYVLENYDQVLNSNITELAENAKVSDASVVRFCRSLGYK 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+++ + E+ L L ++P + +K+FN+ + + + +N+ E+ +A Sbjct: 65 GYQDFKINAAKDVLPREKHLNPILEESDSPDMICHKIFNLEISVLERTLASLNMREVEKA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A+F + ++ +G+GGS + D HKF++IGV+ + D + +M++SL EGDVV+ Sbjct: 125 AQFIFHGKRVLFFGSGGSLLVGQDALHKFMKIGVQVYVHEDRDLQLMASSLAGEGDVVIG 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG V ++ AK+NGA+ I + +P++K+AD +I + + ET + S R Sbjct: 185 ISHSGSNYSVLRCLKNAKENGAQTIALVSRGKTPLSKIADVVIDTASEETIFQSESVSTR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 I QL ++D+ VA +N +++ +QKT Sbjct: 245 IAQLAIIDSLVSIVAFMNYDESYRAIQKTRKATSE 279 >UniRef50_A8S9N1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A8S9N1_9FIRM Length = 321 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 141/272 (51%), Gaps = 3/272 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR Q ++ E +I +++L+ + + I+D+A S + +V++ +++GF Sbjct: 36 NVLLRLREVQPSLSSTERQIAQFILENPDETTTLTIRDLARRSFSSPSSVVRICRVIGFQ 95 Query: 75 GFRNLRSALEDYFS---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ LR AL + ++ ++ ++ Q++V+KV + ++++++ Q ++ +DE+ Sbjct: 96 GYKELRHALTLELATLGENGSHREKDITPQDSLQEIVDKVTHKNIQSLLDTQRLLLLDEL 155 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + AR L+G G S + D KFLR+ C D+H ++ A DV Sbjct: 156 EQCVELIANARTVLLFGIGSSLCVAKDTYLKFLRLDKPCVVNEDSHSQLLQARNATAQDV 215 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 +V ++SG+T ++ ++ K GA +I +T Y S +A+LAD+++ A E+ Sbjct: 216 GIVFSYSGQTMEMIQCIKEMKAGGAPVIAVTRYYPSEVAQLADHVLYVAANESLFRNGAM 275 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKT 283 S+R+ QL ++D + + A N E + KT Sbjct: 276 SSRLSQLNVVDILYTAYASRNHEDTMRRLTKT 307 >UniRef50_A7GD47 Transcriptional regulator, RpiR family n=10 Tax=Clostridium RepID=A7GD47_CLOBL Length = 281 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 145/280 (51%), Gaps = 1/280 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ +R + MT++E +I E++ K + + +++A + S A I++ +K +G+ Sbjct: 1 MGVLLRIRENFDSMTKSEKKIAEYIFKSPKDIISDSAQEIAIKTSTSPASIIRFTKKVGY 60 Query: 74 SGFRNLRSAL-EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 + + AL + +++ + ++++ ++NK+ N + TI + + +V+ +++ Sbjct: 61 NSLNEFKFALVAEEYTKESTEFDYIINYNDSIDSIINKLGNKVIDTINDTKELVDDEKLL 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A + A LYG G S + D Q+K LRI + D+H+ + + + DV Sbjct: 121 EAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDVA 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG T +V AVE AKKNGA I IT S ++ +AD + P+ E L S Sbjct: 181 VAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +R QL + D+ F+ +A+ N+++ N+ T +V+ Sbjct: 241 SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLKR 280 >UniRef50_C6J4B4 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J4B4_9BACL Length = 288 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 137/287 (47%), Gaps = 3/287 (1%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 + + +R +E +T E + E++L +IK +A+ S+A +++ Sbjct: 1 MMAIHDNILIKIRDMKENLTPVERMVAEYILANTEDIPHLSIKSLAKLSKTSDASVLRFC 60 Query: 69 KLLGFSGFRNLRSALEDYFSQSE---QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 K +G+SG+R+ ++ + + +++ + ++ + +++I + S+ Sbjct: 61 KTMGYSGYRSFIVSISAALGSMDDERKDQYTDIQPGDDLDTIIANISRNNMKSIEDTLSV 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 ++ E+ RA + + + +G G S +C D + KF RI C +Y D H + +A+L Sbjct: 121 LDRGEVARAVKALRASNRIVFFGIGASGLVCQDGEQKFSRINKMCHSYTDGHSQLTAATL 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 L +GDV + V++SG T ++ +E+AKKN A + IT S +A AD ++ PE Sbjct: 181 LGKGDVAIFVSNSGNTLEIIETLEIAKKNNATTVAITKYNKSELADKADILLGISTPEIT 240 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + +RI LT++D F VA + + KT +I+ Sbjct: 241 MRSGAMGSRIAMLTIIDMLFAGVASAEYQNVKKYLTKTHSILAAKHK 287 >UniRef50_B2TJ91 Transcriptional regulator, RpiR family n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TJ91_CLOBB Length = 285 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 132/281 (46%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 G + + E ++ +++L+ +I ++AE SEA + ++ Sbjct: 4 EKNRGCLERITNIYSELKGAEKKVAQYVLENPKNIIHFSITELAEVSKASEATVFRLCSK 63 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 LG+ G+++L+ L + + E+ ++ ++ K+ + + +I I ++ Sbjct: 64 LGYKGYQDLKINLAGSVIEPIDNIYEEVKENDDTYIIMRKIMSSNINSIESTLKINKTED 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + +A A++ +G GGS I D HKF+R G+ C A D+H +M +S+ GD Sbjct: 124 LDKAIAIILNAKKIMFFGMGGSWTIANDAYHKFIRTGIDCVASCDSHWQVMFSSMANSGD 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 ++ ++SG ++ + LAKK G KII IT + SP+AK++D + + E+ Sbjct: 184 AIIAFSNSGSNKELVENINLAKKRGIKIIAITGNEKSPLAKISDLHLIAYGNESMFRSEA 243 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +R+ L ++D +V VA ++ N+++ + Sbjct: 244 MESRLTSLMIVDWLYVGVAIKRKDKTLGNLERIRNGIASKR 284 >UniRef50_B5I8T9 Sugar isomerase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I8T9_9ACTO Length = 312 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 137/288 (47%), Gaps = 7/288 (2%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 ++P + +R + + + ++ E +L+ + ++ S+A + + Sbjct: 18 SMP-PTDVTTLIRTELPRLAGSLRKVGELILEDPAAVTHCSAAELGRRTGTSQATVTRFC 76 Query: 69 KLLGFSGFRNLRSALEDYFSQSE------QVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 + +G +++L L + E + +++ D++ + VV V + LR I + Sbjct: 77 RAIGLESYQHLLIELAQERGRGEVSDWGSAEIGPDISPDDSLERVVQVVGSADLRAIQQT 136 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 +++D + RAA+ +AR+ D+YG GGS A+ + + + RIG + + + + H S Sbjct: 137 IERIDLDALERAAQALAKARRIDVYGVGGSGAVAQETETRLFRIGCQVRGWTEVHGAATS 196 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 A+LL DV + ++HSG T + E+AK+ GA I IT SP+AK AD + S Sbjct: 197 AALLTPADVAIGISHSGATRETLEPFEMAKERGATTIAITTDPRSPLAKAADIRLISATS 256 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ET + R L ++D +V V Q+ ++A+ ++ T I Sbjct: 257 ETSFRTGSIGGRHSVLMIVDCLYVRVGQVAYQRASASLALTDHITPQH 304 >UniRef50_A8LV24 Transcriptional regulator, RpiR family n=7 Tax=Actinomycetales RepID=A8LV24_SALAI Length = 320 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 142/288 (49%), Gaps = 7/288 (2%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ +R + +T R+ E +L + I ++AE S A I + + +GF Sbjct: 32 GVLARVRAGADDLTGALRRVAEHVLSDPEAAARATIVELAERSGTSPATITRFCRAMGFE 91 Query: 75 GFRNLRSALEDYFSQS-----EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 G+ +LR + ++ + E+ + + V++++ R + + +++++ Sbjct: 92 GYADLRLGIAAETGRARLAGWTVDIGREIQPGDPLRRVLDQIIAADTRAMHDTAALLDLA 151 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ RAA A + +++GA GS + ++Q RIGV A+ D H + SA+LL+ G Sbjct: 152 EVERAAVAIAGASRVNIFGASGSALVGEEMQFMLHRIGVAAWAWSDVHEGLASAALLRVG 211 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV L V+HSG+T + + A GA + +T SP+A+LAD + + + T Sbjct: 212 DVALGVSHSGQTRETIEMLAEAGSRGATTVAVTGFPRSPLAELADIALLTASRATTFRPD 271 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS--PGAL 295 SAR QL +LD +++VAQ ++A+ +++T VD GA Sbjct: 272 ALSARHPQLVVLDLLYIAVAQRTHDRAHAALRRTAQAVDGHKSAKGAN 319 >UniRef50_Q1LPJ6 Transcriptional regulator, RpiR family n=6 Tax=Burkholderiaceae RepID=Q1LPJ6_RALME Length = 338 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 79/276 (28%), Positives = 140/276 (50%), Gaps = 1/276 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + + + +E R+ +++ + G + ++A+ VS+ I + LG+ G Sbjct: 1 MRDRILAVYDSLRPSERRLADYVARHGASVIRLTMPELADRAGVSQPTIARFCAALGYDG 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F+ + + ++ D+ P D+ KVF+ T+ T+M ++ ++ D+I Sbjct: 61 FKEFKLQFAQNVGGGTPFVHQDVEADDRPADIAGKVFDRTIATLMSVRNALSADQIEHGI 120 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 R AR+ + YG G S + D+QHKF R+G+ AY D H+ MSA+LL+ GDV ++V Sbjct: 121 RLLAGARRIEFYGCGNSGIVALDIQHKFFRLGIPTTAYSDPHVFSMSAALLRPGDVAVLV 180 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SGRT D+ A LA+ +GA ++ +THS SP+A+LAD + S E + ++RI Sbjct: 181 SNSGRTWDMLTAATLARSSGASVLALTHSG-SPLARLADVCVFSDVEEDSEVYTPMTSRI 239 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L L D VA + +Q+ A + Sbjct: 240 CHLVLGDVLAAGVALDRADSVAAGLQRAKAHLRERR 275 >UniRef50_C0Z7S3 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7S3_BREBN Length = 288 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 147/277 (53%), Gaps = 1/277 (0%) Query: 20 LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNL 79 L+ + + +E ++ +++L +++ +AE VSEA I+++++ L G++ L Sbjct: 12 LQAILDQLKPSERKVADYILAHPEDVVKLSVQKLAEYSGVSEATIIRLARSLNMKGYQEL 71 Query: 80 RSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 + + Q+ + E+ + + + ++ V +++I + S+++ +E+ +A Sbjct: 72 KLRVAGDLTKQTARGSYQEIMMEGSVESIMQAVSWNNIQSIQDTLSVLSNEEVKKAVDVL 131 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 AR+ D+YG G S I D++ KF RI + C+AY D H + SA L E DVV+ +++S Sbjct: 132 SVARKIDVYGVGASAVIADDIRQKFSRINLWCEAYSDFHAQLTSAVTLTEKDVVIGISYS 191 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G+T D+ ++ AK+ GA II +T SP+A+LA+ + + + E + ++RI QL Sbjct: 192 GQTEDIIQSLTEAKQQGATIITLTKFGPSPVAELANIRLFTSSVEKSIRSGAMASRIAQL 251 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGAL 295 ++D F+++ E+ ++K+ V + Sbjct: 252 NVIDILFITMISRMQERVIPLLEKSRLAVSRTKRSST 288 >UniRef50_A9KIQ0 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIQ0_CLOPH Length = 284 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 126/279 (45%), Gaps = 3/279 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ + T++E + +++ + +I D+AE V + + + K L + Sbjct: 4 GIFARIESSYSKFTKSEKIVADFVFENPEKVLYTSITDLAEICGVGDTTVFRFCKALKLN 63 Query: 75 GFRNLRSALEDYFSQ---SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ + L + S+ + ++ D+ Q + K + + + E +N + + Sbjct: 64 GYQEFKMFLAQDIAVRTGSDYTINGSVSQDDDIQTICKKALAVDIAALTETFEGLNFEAV 123 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + A + +G G S I + + KF+RI + D H+ MSA+LL D+ Sbjct: 124 TKVVDMISNANKVQFFGMGSSGVIALEAKMKFMRILPNVEHIADCHMQFMSAALLSSRDL 183 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++SG T D LAK NG K++ IT +S +A ++D +I + E PL G + Sbjct: 184 AIIFSYSGSTKDSIEIANLAKSNGCKVVSITRYVNSHLANISDVVIPCGSNEGPLDGGAS 243 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 S ++Q +LD ++ + Q+ +N KT + Sbjct: 244 STSMVQFYILDILYLLYFTKHYHQSKLNKAKTTESISSK 282 >UniRef50_A8RI47 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI47_9CLOT Length = 285 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 152/281 (54%), Gaps = 1/281 (0%) Query: 12 NGIGLAPYLRMKQEGMTE-NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 ++ + + NE +I E++ ++ D AEA VSEA IV+ ++ Sbjct: 4 PNTSYQLRVQSILPSINKKNEMKIYEFIEINRKEIIHMSVADAAEACGVSEAAIVRYAQK 63 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 LG+ G++ ++ ++ + Q + +L+ + +V+K+F+ ++++ + +++ + Sbjct: 64 LGYKGYQAMKISIAQDVIEPGQQIYGQLSKGDTIPTIVDKIFDSNIQSLRDTSDVLSREN 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 I A R+ +G GGS + D QHKFL+IG A+ D+++ M+AS+L D Sbjct: 124 IDEAVNLILGCRRLLFFGVGGSGCVAMDGQHKFLKIGYMAMAFTDSNLQAMAASVLTSRD 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V++ V+HSG + D+ A+++AK++GAK I IT+ SPI + AD ++ + + ET Sbjct: 184 VLVAVSHSGASKDILMAMDIAKQSGAKTIAITNYGKSPIVEKADVVLYTSSNETAFNSDA 243 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 S+RI +LT++D ++ V+ +++ N+ KT +D Sbjct: 244 LSSRIAELTIIDMLYIGVSYKRYDESYANILKTRKALDSTK 284 >UniRef50_C4V1J5 RpiR family transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1J5_9FIRM Length = 282 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 84/274 (30%), Positives = 148/274 (54%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + K +T++E +I E++L+ N I ++AE + S+A IV+ KL G G Sbjct: 6 FLQLIEDKLGTLTKSEKKIAEYILEHPNRVVDATITELAERIGTSDASIVRFCKLFGCKG 65 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++N + L + L L + + K+FN + T+ E ++NV+ + A Sbjct: 66 YQNFKIRLAREVVPHYKQLNVALEQHDTALTICQKIFNTEIATLHETLEMLNVEHLQTMA 125 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + +A +++G+GGS+ + D++HKFL++G+RC DA I MSASLL++GDV + + Sbjct: 126 QRIREADYIEVFGSGGSSVVAQDIRHKFLKVGIRCTVLLDADIQAMSASLLKKGDVAIGI 185 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +H+G T V +++A+KNGA +I +T SPI ++AD +I + ET + SARI Sbjct: 186 SHTGSTKSVFHCLKMARKNGAYVILLTTQAKSPIGRIADLVIPVGSKETLFKSESTSARI 245 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 +L ++DA + ++ N+ + KT Sbjct: 246 AELVVMDAVLALAVSDDYKKYNVKITKTRDATSE 279 >UniRef50_Q1QSE2 Transcriptional regulator, RpiR family n=28 Tax=cellular organisms RepID=Q1QSE2_CHRSD Length = 289 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 1/276 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L +R + E +E ++ ++L+ I D+A VSE +V+ + LG +G Sbjct: 5 LFDEMRRRMEHFRRSEQKVARFVLRHPEDVIHMRIVDLATEAKVSEPTVVRFCRALGCNG 64 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F++ + L + Q + ++ + + +F+ T+ T++ + ++ + +A Sbjct: 65 FQDFKLKLAQMLATGSQFAQFSMNDSDSVAEFAHNIFDSTVGTLLSVRDRLDHAALGKAV 124 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A + + YG G S A+ D QHKF R+ + AY D H+ MSA L DVV+ + Sbjct: 125 TALAMANRVEFYGFGASGAVAFDAQHKFFRLQISTAAYTDPHMQNMSAVTLTPRDVVVAI 184 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + +GRT + A+V LA++ GA +I + SP+A + E + S+R+ Sbjct: 185 SQTGRTRALVASVRLARETGATVIGLC-PSDSPLASEVTLPLYIDVHEDTEIYTPMSSRV 243 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L ++D V VA+ + ++ + Sbjct: 244 AHLVIIDVLAVGVAKTRGPKLAEQLKSVKKSLVPLR 279 >UniRef50_UPI0001693BD8 YbbH n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693BD8 Length = 265 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 126/264 (47%), Gaps = 1/264 (0%) Query: 34 IVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFS-QSEQ 92 + ++++ + + I ++AE S A I + K L F GF + + L + Q + Sbjct: 2 LASYIVEHAHEVVSMGITELAERSQTSPATISRFCKSLHFQGFTDFKLKLSGELAKQPSE 61 Query: 93 VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGS 152 ++ ++V+ + LR+I + + ++ ++ +A ARQ DLYG S Sbjct: 62 HSYQDIVAGNPLSEIVSAIEANHLRSIADTTQLNDIKQLQQAVSALKNARQIDLYGVATS 121 Query: 153 NAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAK 212 + D K +RIG R + D H+ + SAS L E DVV +++SG T + A+ AK Sbjct: 122 GIVAQDFYQKLVRIGKRTSVFSDPHMQITSASNLGENDVVFAISYSGDTEETIQALRCAK 181 Query: 213 KNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLN 272 + GA I +T +P+A L+D + + E + + ++RI QL ++D F S+ Sbjct: 182 ERGAVTISLTKFGTNPLANLSDIRLFASTLEEGMRRGDMASRIAQLHVIDILFTSLVSEE 241 Query: 273 IEQANINMQKTGAIVDFFSPGALK 296 ++ ++++ +V + + Sbjct: 242 FDELIPRLERSYQLVRKYRNKGRE 265 >UniRef50_B1YJ20 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJ20_EXIS2 Length = 284 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 1/278 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ + E + + ++ +++L N I +AE S A +V+ + LG Sbjct: 4 GIFSQISAVHEELPSSSRKVADFVLAHMNEIAGMTIHHLAEESGTSAAAVVRFCRALGLK 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+ LR + ++++ ++ +E P D+V K + +++ + + ++ D I A Sbjct: 64 GYPELRMRISADTARTDLKGYHDIEKNERPADLVEKTVSNSIQALQDTAKQLSEDRIAEA 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A QAR YG G SN + D K+ R+G D H++ + + DV Sbjct: 124 ADVLDQARAIYFYGIGASNVVALDAAQKWTRVGKLTIQESDQHLVATILANASQDDVFFA 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 +++SG T +V + LAK G K+I +T + +++LAD + + APE PL S+ Sbjct: 184 ISYSGETEEVVELIRLAKIRGLKVISLTRFGDNRVSQLADIALWTSRAPEAPLRSAALSS 243 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 R+ QL +D F+S A ++ + +Q T V Sbjct: 244 RLAQLFAIDVLFLSYAAVHYDDTIERLQYTRESVKMLH 281 >UniRef50_C4G9W4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9W4_9FIRM Length = 280 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 134/273 (49%), Gaps = 2/273 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +++ +T E +I +++ K +I ++AE V++A + + + +G Sbjct: 5 NVLLSMQLSYNQLTRTEKKIADYVQKNAQKVLFMSITELAEECHVADASVHRFCRTIGAK 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G++ + L + SE + P + +V L I E +++ +++ +A Sbjct: 65 GYQEFKMWLSINMGHEKGEEESEEEDGKEP--IFQQVLKSHLEAINETNQLLDKEKVDQA 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 R +ARQ +G G S + +KFL + + D H+ M+AS++ E D++ V Sbjct: 123 VRMLTEARQIMFFGVGDSKTAAIEANNKFLHVTPKVMCAGDTHLQAMAASMMTEEDLLFV 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V++SG T D ++AK+ GAK+I IT SP+ + +D ++ + E PL G + A+ Sbjct: 183 VSYSGSTKDTVEVAQIAKEAGAKVISITRFLKSPLTEFSDCVLICGSKEGPLEGGSMGAK 242 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + QL ++D + + N ++A N QKT V Sbjct: 243 LSQLHIIDILYQCYFKANGKKARENRQKTANAV 275 >UniRef50_P0ACS8 HTH-type transcriptional regulator rpiR n=34 Tax=Gammaproteobacteria RepID=RPIR_ECOL6 Length = 296 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS Sbjct: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM Sbjct: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM Sbjct: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP Sbjct: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK Sbjct: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 >UniRef50_C5CIM2 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIM2_KOSOT Length = 283 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 130/278 (46%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + ++ T+ E +I +++K ++ +V++ L VSE IV+ + Sbjct: 1 MQGKENVLLTIETLKDSFTKTEKKIATFVVKNPQKVVYMSLTEVSDILKVSEGSIVRFCQ 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LG++GF + AL +Q + N V + I ++ + Sbjct: 61 KLGYTGFHPFKIALAVSENQESFSSSEFDFNSRDLSSLKNYVAQRHIDVIKNTSEFISEE 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + AR + G G S D +KF+RIG+ C+ DAHI M AS L+EG Sbjct: 121 ILEACVEKILTARTILISGVGASGNTAHDAFYKFMRIGLNCKTSHDAHIQAMIASELREG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV+L ++ SG T ++ ++A+K GA +I IT SP+A+ A +++ +P E+P Sbjct: 181 DVLLAISQSGSTLEIVDIADIARKGGATVIAITGYARSPLARFAHHVLLTPTRESPFESG 240 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++I QL +L+ F +V E+ +++T V Sbjct: 241 ALRSKIAQLYVLELLFTAVFHRMEEKGRKFIERTADSV 278 >UniRef50_C1PDB4 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PDB4_BACCO Length = 283 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 69/270 (25%), Positives = 132/270 (48%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 ++ + E +I +++L+ I VA+ L V++A + + K +GFSG Sbjct: 10 CLHRIQTMYSEFSAKERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSG 69 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F+ L+ AL ++ + + + + + V KVF + T+ + +N +H A Sbjct: 70 FQALKIALAAEAARPGKNMDEAVKDTDNEKAVAIKVFESNIETLQDTIHTLNQKHLHEAV 129 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + +A+ YG G ++ I D KFL+ + AY D H+ ++SA+ + DV + + Sbjct: 130 EWICRAKHIVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFI 189 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +H+G ++ ++ +K GAK I IT SP+++ AD + + + E + SARI Sbjct: 190 SHAGADKEMLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPLFTVSQEADFRFSSFSARI 249 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 +QL+L+D +V+V + +QK Sbjct: 250 VQLSLIDTLYVNVMLRYKDTNEEILQKGKE 279 >UniRef50_C2D8M2 Possible transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8M2_9ACTN Length = 291 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 132/273 (48%), Gaps = 3/273 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR + E + ++L+ + S ++K +A VS A +V++ K +GF Sbjct: 3 NIIIRLRENIGFLNPAEKAVARYVLQCPHESNRLSVKALAARSFVSPAAVVRMCKSIGFE 62 Query: 75 GFRNLRSALEDYFSQSEQVLP---SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF+ ++ L + + +LP ++ ++ + ++ K+ + ++ + +++ + I Sbjct: 63 GFKEFKTELTRELATEKLILPLDTKDIKQNDTLESIIKKITLKNIHSLYDALRLIDPETI 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A + L+G G S D KFLR+ C D H+ +++A DV Sbjct: 123 EKAVELLQACDRILLFGLGASLIAAKDANLKFLRVNKTCLINDDWHLQLITARNSTSQDV 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 +V+++SG+T++ E+ K N II IT SPI+KLAD ++ + + E+ Sbjct: 183 GIVISYSGQTAETLTCAEILKHNNTPIIAITRCIESPISKLADVLLYTTSNESLFRSAAM 242 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 S+RI QL ++D + + A + E+ + KT Sbjct: 243 SSRISQLNIIDILYTAFAVSDYEKNFTYLSKTR 275 >UniRef50_B6ITC5 HTH-type transcriptional regulator hexR, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ITC5_RHOCS Length = 280 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 133/277 (48%), Gaps = 1/277 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R + G+ +E +I + +L+ + ++ ++A VS+ +V+ + +G SG Sbjct: 1 MLDRIRSMRPGLRRSEQKIADIVLRQPHAVVNASVAELAHDADVSQPTVVRFCRSIGCSG 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 +++ + L + + D+ ++ K+ N ++ + ++ +N D + A Sbjct: 61 YQDFKLRLAQDLAAGPARPEDAVRPDDPVAEIAAKLLNRSIGALTRLRNQLNPDALEAAV 120 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + + R+ D YG G S + D Q+KF R+G+ A+ D+H+ M+A+LL V L V Sbjct: 121 QVLTETRRLDCYGFGASGVVALDAQNKFFRLGLPVVAHTDSHVQAMAAALLGPQGVALAV 180 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + SGRT ++ +V+LA GA++I IT SP+A A + APE ++RI Sbjct: 181 SRSGRTRELLRSVDLALAGGARVIAITA-GGSPLAGRATVPLLVDAPEDSSPYTPMTSRI 239 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 L ++D V+ A +++ A + Sbjct: 240 AHLAVVDILQVATALRRGVHTGDPLRRPAAALRDDRQ 276 >UniRef50_Q4LA29 Similar to transcriptional regulator n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4LA29_STAHJ Length = 283 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 133/274 (48%), Gaps = 2/274 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 + + +E R+ E++L+ + +++ +A+ VS A +V++SK L GF Sbjct: 5 LIIIESSLSDLNPSERRVAEYILEHPDEIINYSVQKLADLTNVSVATVVRLSKKLKCKGF 64 Query: 77 RNLRSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 ++L+ + ++ + Q +E+ D + ++V VF+ +T+ + + I++ + I A Sbjct: 65 QDLKLKIAYDLNEPGNIQRGYAEIDKDYSIEEVTQTVFHNNTKTLRDTERILSTENIKHA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +R+ +YG G S I D + K RI C + ++ L DVV+ Sbjct: 125 FELIVNSRKTCIYGIGASALIAQDFKQKLTRIDYWCDVGSSFDEQVTLSANLSSEDVVIA 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG+T D+ + +LAK+ GAK+I IT +PI+ L+D + + E S+R Sbjct: 185 ISSSGQTKDIVNSTQLAKEKGAKVISITKYGDNPISNLSDVQLFVSSSEKAKRSGAMSSR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 I L+++D ++ +A + ++ T + Sbjct: 245 IAMLSIIDILYICIASNDYLSNRQKLENTRKAIK 278 >UniRef50_C5C2G7 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C2G7_BEUC1 Length = 285 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 6/284 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + + + R+ E +L+ + I ++A SE IV+ + LG Sbjct: 1 MSIQSSIQSRLDQFAPSMRRVAEAILERPQVVLEKTISELASQCETSETTIVRFCRTLGL 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPS------ELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 +G+ LR L + ++ ++ + K+ I E + ++ Sbjct: 61 TGYVQLRLELATEIGRENAQRGELGDHGADILAEDGLAAMAAKIAFTDTLGIEETLASLD 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 ++ + R A + YG G S + AD+Q K RIG + D H + +A+L Sbjct: 121 IEHLERVVDAIDTAGRSVTYGVGSSGSSAADLQRKLFRIGRVAFTFDDPHDAVTAAALSS 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 GDV + +HSG T + A + A K+GA+ + +T+S S +A+ AD ++ + ET Sbjct: 181 PGDVAVAFSHSGATREALAFLATAGKHGARTVAVTNSAESALARAADIVLVTSVRETQFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++RI QL ++D FV VAQ +Q ++ T A Sbjct: 241 SGAMASRIAQLMIVDCIFVGVAQRRYDQTVDALKSTYAAAQELR 284 >UniRef50_P44540 Uncharacterized HTH-type transcriptional regulator HI0143 n=33 Tax=Gammaproteobacteria RepID=Y143_HAEIN Length = 288 Score = 279 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 143/282 (50%), Gaps = 4/282 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + +T++E +I + +L+ +L ++ ++A+ L V EA +V+ + Sbjct: 1 MAKSGNVLNKIGSLYQSLTKSEKKIADTILRSPDLVSQCSLSEIAKHLQVGEATLVRFCR 60 Query: 70 LLGFSGFRNLRSALEDYFS----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 +GF GF + L + Q E +L +E+ + + K+ + E ++ Sbjct: 61 TIGFKGFSEFKLELSIELATKDNQDESILETEIMPSDDSLTIAQKLQTAVANVMEETINL 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 +++ ++ + +AR+ L+G G S D ++K +RIG + A + H M M A+L Sbjct: 121 LDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAAL 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 L DV + ++HSG +++ +++AK+NGA + +THS SP+ + ADY++ + + Sbjct: 181 LTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGK 240 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L G + +I QL +LD + + Q + A QKT ++ Sbjct: 241 LQGDSIGTKIAQLFVLDLIYALLVQGEEDIAAQTKQKTLNVI 282 >UniRef50_Q45581 Uncharacterized HTH-type transcriptional regulator ybbH n=7 Tax=Bacillaceae RepID=YBBH_BACSU Length = 283 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 123/276 (44%), Gaps = 1/276 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 ++ + + +E ++ +++L + + + +++ S+A ++++ K LG GF Sbjct: 6 LAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGF 65 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 ++L+ + ++ ++ E + K ++ I + +++ E+ RA Sbjct: 66 QDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVS 125 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 +A G G S + D Q K+LRI + A+ D H++ + + D+V ++ Sbjct: 126 LLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAIS 185 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASARI 255 SG T ++ +AK+ G I +T + ++ LAD + + + E + S+R+ Sbjct: 186 FSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAATSSRL 245 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 QL ++D F+ +A E + KT A + Sbjct: 246 AQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMR 281 >UniRef50_A7VQA6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQA6_9CLOT Length = 290 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 139/278 (50%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 L +G+G ++ ++ +I ++++ + + + +AE+ VSEA +V+ + Sbjct: 8 LQSGMGCTERIQATYSALSGASKKIADFVIDHPDQAVHMTVVQLAESCEVSEASVVRFCQ 67 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 L ++GF + +L + Q++ ++ ++ ++ KVF + + E ++N Sbjct: 68 CLQYAGFYEFKLSLAAEIVPASQMIQEDITVEDTEPTILEKVFAGEQQALQETLQMLNRQ 127 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A + + + + G + I D ++ LR G+ + D + ++ AS+L+ G Sbjct: 128 DFISAVNHIAFSNKVEFFSCGNARPIAQDAHYRLLRTGIDSRIGIDDYDCLIHASMLRTG 187 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++HSG T + +E AKKNGA ICIT +PI +++D + S + ET Sbjct: 188 DVAIGISHSGSTKNTIKMLEEAKKNGATTICITGMEKAPITRVSDICMVSHSKETMFRSM 247 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++RI Q+ ++DA V+V+ E++ + T I+ Sbjct: 248 AMASRIAQMAIIDALVVAVSFKRFERSKQYLTLTDKIL 285 >UniRef50_A1AYM0 Transcriptional regulator, RpiR family n=3 Tax=Proteobacteria RepID=A1AYM0_PARDP Length = 287 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 118/280 (42%), Positives = 176/280 (62%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + +RMK +T E+R+V+ + +L A++ V+E VS+AM+VK++K LG Sbjct: 7 PRTVGAQIRMKLPFLTPLEARVVDTITGRNDLDLTTALRQVSEDAGVSDAMVVKIAKKLG 66 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F+GFR+ R AL Y L SE++ +++ D++ KVF +++ + E SI++V Sbjct: 67 FNGFRDFREALVVYRQTDVASLHSEISPEDSSADIIRKVFQTSIQALEETMSIIDVSAFD 126 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 RAA + ARQRD YG GGS I DV HKFLRIG+R D H+M+MSA+LL DVV Sbjct: 127 RAATLLHGARQRDFYGVGGSAQIARDVAHKFLRIGLRAGVQDDPHMMLMSAALLGPEDVV 186 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +HSG TS+V A LA++ GA++I IT+ +P+++LAD +CS A +PLLG NA+ Sbjct: 187 VAFSHSGTTSNVIEAARLARQQGARVIAITNYATAPLSELADIALCSTAQGSPLLGENAA 246 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ARI QL ++DA FV+VAQ ++E+A + +T VD Sbjct: 247 ARIAQLNIMDAIFVAVAQRDLERAEAQLARTRNAVDNKRR 286 >UniRef50_A8RWE9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWE9_9CLOT Length = 301 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 1/285 (0%) Query: 3 QSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 ++ + NG L + K+ +++ E E++ +I D+AE SEA Sbjct: 13 ANDMGENISNG-TLYDRVEEKRGSLSKKELETAEYMAAHQEQLIYSSITDLAERAGSSEA 71 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 + +V LG+ GF+ L+ + + ++ + L D + ++ K+F+ + T+ Sbjct: 72 TVTRVCGKLGYRGFQALKVGVARELTTPQEKIHENLEADSPAEVIIEKIFSSAIETLSMT 131 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 Q +NV + + +AR+ + G G S +I AD QHKFLR+ + AY D H+ M++ Sbjct: 132 QKSINVKAVAASIDALCRARRIIIIGNGNSASIAADAQHKFLRLDLNAHAYTDDHMQMIA 191 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 S + + DV+L +++SG + +V A AK+ GA +I +T+ SP++KLAD + + + Sbjct: 192 VSSMTDQDVLLAISYSGSSRNVVEAAHQAKEQGATVISLTNEGSSPVSKLADICLNTYSQ 251 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ET S+R+ +LT++D + VA ++A N + + Sbjct: 252 ETRYRTYAISSRMAELTIIDTIYTGVALRLGDKAIANFEALERAL 296 >UniRef50_A8RRF4 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A8RRF4_9CLOT Length = 289 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 132/275 (48%), Gaps = 3/275 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ + E ++ +L + + +IK +A+ S A IV++ + +GF Sbjct: 3 SVLVRIQEYSAQASGAEKGVLRFLRENPEEAAGYSIKQLADKTFSSAATIVRLCRKMGFD 62 Query: 75 GFRNLRSALEDYFS---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ L+ +L + +S + + E+ D++ +++VNKV + ++ + +V++D + Sbjct: 63 GYKELQKSLLYESALRRESTRPMEQEIKKDDSLEELVNKVTYKNIVSLDNTRKLVDLDIL 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 ++ +++ L+G G S + D+ K LR+ C D H ++ A ++ D+ Sbjct: 123 NQCVELLDRSQTVYLFGIGSSLLVARDMYLKLLRVNKACVICDDWHAQLLQARNIRSCDL 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 L+V++SG T ++ A+ A +I I+ SP+ +LADY + A E Sbjct: 183 ALIVSYSGLTEEMITCAREARLREAPVITISRFEQSPLVRLADYNLAVAATELIFRSGAM 242 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 S+RI QL ++D + + ++ +KT Sbjct: 243 SSRISQLNMIDILYTAYVHKRYDECMEQFRKTHIA 277 >UniRef50_D1YCB1 Transcriptional regulator, RpiR family n=3 Tax=Propionibacterium acnes RepID=D1YCB1_PROAC Length = 290 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 6/284 (2%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L P + M + M E+++ +L + + A + +AEA VS A +V+ + LG S Sbjct: 4 SLLPRIDMARTTMRPAEAQVAAVILAKPDWTLAASTSQLAEAAGVSPATVVRFCRALGMS 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSE------LAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+R LR+ L S+ L + D++ ++ K+ RTI V+ Sbjct: 64 GYRELRTELARDLSRRTLELERSSVAEGTITLDDSLTQMITKIAFHEARTIENTARAVDA 123 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 DE+ A A + L+G G S + +D+ K RIG+ CQ + D H+ ++ A+L + Sbjct: 124 DELEAVASAISIAPRTALFGVGSSGLVASDLSEKLERIGLVCQHHQDTHMQLVHAALCKR 183 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 V L ++ SG T +V A+ +A+K+GA + +T SP+ +LAD+++ + A ET + Sbjct: 184 PCVALGISFSGNTQEVVEALTVAQKHGATTVAMTGLPDSPVGRLADHVLVTSARETQVRA 243 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 S+R+ QL ++D F VAQL ++ + T V Sbjct: 244 GAMSSRMAQLAVVDFLFARVAQLCMDDLETLLSSTRTAVSTHRK 287 >UniRef50_B9K581 Transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) n=3 Tax=Proteobacteria RepID=B9K581_AGRVS Length = 291 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 115/278 (41%), Positives = 174/278 (62%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 P +RM +T E+++V+ + + S ++K +AE VSEAM+VK++K LGFSGFR Sbjct: 13 PRIRMMMPMLTPLEAKVVDTVFGMRDFSEETSLKQIAENAGVSEAMVVKITKKLGFSGFR 72 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 + RS++ Y Q + EL+ D+ ++V KVF ++ + E +I+++ +AA Sbjct: 73 DFRSSVSQYNRQPTTEMHQELSVDDTSLEIVQKVFRTSIHALEETLAILDMAAFDQAADM 132 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 ++AR RD YG GGS I DV HKFLRIGVR + D+H+M+MSA+LL + DV + +H Sbjct: 133 IHKARNRDFYGVGGSAQIARDVAHKFLRIGVRASVFDDSHMMLMSAALLADTDVAIGFSH 192 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T V A++LA+KNGA I +T+ S +A+ AD ++CS A +PL+G NA+ARI Q Sbjct: 193 SGNTIAVIEALQLARKNGASTIAVTNYGSSALAQSADVVLCSTAQGSPLMGENAAARIAQ 252 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGAL 295 L +LDA FV+VAQ + + A N+ +T + V L Sbjct: 253 LNILDAIFVAVAQRDYQAAERNLDRTMSAVTSKRRDRL 290 >UniRef50_B8KWX3 Bifunctional protein glk n=3 Tax=unclassified Gammaproteobacteria RepID=B8KWX3_9GAMM Length = 337 Score = 276 bits (708), Expect = 4e-73, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 3/294 (1%) Query: 2 SQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSE 61 S+ S++ I L + G+ ++E ++ + +L + + +I +A VSE Sbjct: 39 KNSDGQSSMAYDINLLEDINQSLPGLNKSEVKVAQAILSDPDAATRMSIASLASRAGVSE 98 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 + + K G SGF + + L + + + F + K+F+ + ++ Sbjct: 99 PSVNRFCKRFGASGFPDFKLRLATSMVSGVRYISRAVEFSDDIDTYPGKLFDNAISALVA 158 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 + + +I RA F QAR+ +G G S A+ D +HKF R V + D + M Sbjct: 159 AKEQLPTGDIARAVDFLAQARRIHFFGLGTSAAVTKDAEHKFFRFNVPVTNHQDPLMQRM 218 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 A+ GDV +++H+GRT + ELA++ A ++ +T SP+A+ +D I Sbjct: 219 LAAAGSVGDVFFIISHTGRTRALVEVAELARQTEATVVSLTA-PQSPLAQESDCAITLTI 277 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD--FFSPG 293 E ++R++QL ++D V E+ ++ + + PG Sbjct: 278 GENTEEYLPMTSRLVQLAVIDVLATGVTLRRGERFLPHLARIKDSLKATRLKPG 331 >UniRef50_Q3JNN8 Transcriptional regulator, RpiR family n=54 Tax=Burkholderiaceae RepID=Q3JNN8_BURP1 Length = 339 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 136/280 (48%), Gaps = 1/280 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P + + + +E ++ +++L ++ ++A S+ I + + LG S Sbjct: 7 TMLPRIETIRAQLRPSERKLADFVLAAPREVLDLSMTELAARAGASQPTIARFCQALGCS 66 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR + L + + ++ DE ++ KVF+ T+ ++E ++ ++ + A Sbjct: 67 GFREFKIRLAQSVAPGVASVYRDVEPDERAPGIIGKVFDRTIGALIEVRNSLSATSVAEA 126 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 +A + + YGAGGS D+QHKF R+GV AY D H MSA+LL DVV+ Sbjct: 127 IELLTRASRIEFYGAGGSGIAAQDIQHKFFRLGVPSVAYSDPHTFSMSAALLGANDVVVA 186 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++GRT D+ A A GAK+I ITHS HSP+A+L+ + S E + ++R Sbjct: 187 ISNTGRTRDIVDAARAALACGAKVISITHS-HSPLAQLSTVSLASNVAEETDVFSPMTSR 245 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 + L + D V VA + + + + GA Sbjct: 246 MSHLAIGDILAVGVALRRGPELVDRLGRAKEAITRRRIGA 285 >UniRef50_C2L140 RpiR family transcriptional regulator n=6 Tax=Clostridiales RepID=C2L140_9FIRM Length = 285 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 126/282 (44%), Gaps = 5/282 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 +R T+ E ++ +++L+ + +I D+AE V + + + K + Sbjct: 4 DFLTKIRSAYNQFTKAEKKVADYILQNPDQVLFMSISDLAETCKVGDTSVFRFCKTMNVK 63 Query: 75 GFRNLRSALEDYF----SQSEQVLPSELAFDEA-PQDVVNKVFNITLRTIMEGQSIVNVD 129 G++ + L +S++ ++ + ++ KV T+ +I E S+++ + Sbjct: 64 GYQEFKMTLSLSMRGNGKESKEGDGGNVSLQDNNIAELAGKVLEETIDSIKETHSLLDFN 123 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 ++ A +A++ +G G S +KF RI + +MSA+ ++ G Sbjct: 124 KVTEAMNALSKAKRILFFGVGASMLTAMKAMNKFHRIEPKVYCSEMVSQQLMSAATMERG 183 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV ++ ++SG T D+ +LAK++GA ++ IT S + D ++ A L Sbjct: 184 DVAVIFSYSGATRDIVEIAKLAKESGATVVSITRFQKSELTDYTDILLLCGANVGSLQKG 243 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + SA I QL L+D + + + E N ++KT + + Sbjct: 244 STSAEISQLFLVDIMYTEYYRRHYEYCNQILEKTTVAIKDRN 285 >UniRef50_A6LRF3 Transcriptional regulator, RpiR family n=2 Tax=Bacteria RepID=A6LRF3_CLOB8 Length = 294 Score = 274 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 145/290 (50%), Gaps = 8/290 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + ++ + +E ++ +++L G+ + +++ + VSE I++ K Sbjct: 1 MNHTESYEYKIKNMYNLLRSSEKKVADYVLLNGHSVSTMTLAELSRQVGVSEPTIIRFVK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSE--------LAFDEAPQDVVNKVFNITLRTIME 121 +G SG+ + AL + + + + DE +DV K+ +T++ + + Sbjct: 61 SIGCSGYSEFKMALMKEWGRESVDKQYDSKLLVELHIDRDEKIEDVPVKMIGLTIKALED 120 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 I+++++ +A + D+YG G S ++ +D+++KFLRIG+ C+AY D++I + Sbjct: 121 TLKIIDINKYKKAIEMIRSSNIIDVYGVGNSGSVASDIRNKFLRIGLECRAYSDSNIQQI 180 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 AS L D+ + V+HSG T D A+++AK++GA+ I +T+ I++ AD + Sbjct: 181 CASHLTSNDLAIGVSHSGSTIDTVNALKIAKESGARTIALTNFKAPAISEYADITFFTGG 240 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ET +RI QL ++D ++ + + + ++K ++ + Sbjct: 241 EETTFYSETMVSRISQLAIVDMLYMGILLDDYDLYTKRLEKINLLLKEKN 290 >UniRef50_UPI0001789683 transcriptional regulator, RpiR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789683 Length = 289 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 134/280 (47%), Gaps = 2/280 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + +T+ E ++ +++ + + D++E V E +++ + L Sbjct: 9 NQSNTLLMISSIYSSLTKTEKKVADYVKGFPEETVLATVTDLSEKAGVGETSVIRFCRKL 68 Query: 72 GFSGFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 GF GF + ++ + V+ + + + V K+ + +VN D Sbjct: 69 GFRGFHEFKLSVAQDLVDRPPSVVDTSIDEQDDLMTVARKLTMQHEILLKNTLDLVNADN 128 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + A A + +YG G S D+ ++ +R+G+ +A+ D+HI+ MSASL+++GD Sbjct: 129 LRMAVDKLLAANKVYVYGVGSSGITALDLHYQLMRLGLNVEAHRDSHIIAMSASLVKKGD 188 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 +V ++ SG T D+ AV+ AKKNGA +IC+T SPIA AD ++ + E P G Sbjct: 189 LVFAISTSGSTRDLVDAVKEAKKNGADVICLTGHLRSPIATYADTVLLVSSREMPTEGGA 248 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + + +Q +L+ + E A+ +++KT + V Sbjct: 249 LATKFMQTYMLNILTTLLTMK-KEDASESLKKTASSVADK 287 >UniRef50_B4EZY5 RpiR-family transcriptional regulator n=54 Tax=Gammaproteobacteria RepID=B4EZY5_PROMH Length = 295 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 129/284 (45%), Gaps = 4/284 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + L + +T RI +++L +I +++A EA +V+ + L Sbjct: 10 KPGKILDTLGAMKNSLTRVSQRIADYILFHPTEVTQLSIAQLSQATKAGEATVVRFCRTL 69 Query: 72 GFSGFRNLRSALEDYFSQSEQV----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 G+ GF++ + L + S+ L +E++ + + K+ + E ++++ Sbjct: 70 GYKGFQDFKMDLAIEMATSDNDESPILDAEVSHQDDIHTIGLKLQATINNVLSETLNLLD 129 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 + ++ A A + G G S D+++K +RIG R A + H M M ASLL+ Sbjct: 130 MQQVQGAVNALLSANYVFICGVGSSGITAEDLKNKLMRIGYRVDAVTNNHFMYMQASLLK 189 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 GDV + ++HSG + + A++LAK+ GA I +TH+ S I + AD+ + + + L Sbjct: 190 SGDVAIGISHSGNSLETVHALKLAKEAGASTIALTHNLGSQIMEYADHHLINGNRQGKLQ 249 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 G + + QL +LD + + Q E +T + Sbjct: 250 GDSIGTKTAQLFVLDLLYTLLVQAKPETVKEQKLRTLNALKQTH 293 >UniRef50_P46118 HTH-type transcriptional regulator hexR n=302 Tax=Gammaproteobacteria RepID=HEXR_ECOLI Length = 289 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 127/278 (45%), Gaps = 1/278 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + E ++++E ++ E +L + + +I +A VSE + + + + Sbjct: 1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF + + L + + + D++ + K+F + T+ + ++ I+R Sbjct: 61 RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A QA++ +G G S A+ D +KF R V D + MS +GDVV+ Sbjct: 121 AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++H+GRT ++ +LA++N A +I +T + +P+A+ A I PE + + Sbjct: 181 LISHTGRTKNLVELAQLARENDAMVIALTSAG-TPLAREATLAITLDVPEDTDIYMPMVS 239 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 R+ QLT++D + N+++ + Sbjct: 240 RLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESR 277 >UniRef50_C8NZR0 RpiR family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZR0_ERYRH Length = 280 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 137/279 (49%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ T+ E RI E++L+ + + + A+ + S A IV+ SK +G+ Sbjct: 1 MSCIYRIKENMHTYTDTEKRIAEYILENKDEVVNFSSQHFAKEINSSAAAIVRFSKKIGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +GF +L+ L S+ EQ + ++ + +V K RT ++N++ + Sbjct: 61 NGFTHLKVELARDHSEEEQSFDKLIKEEDTIETMVRKSHYSNHRTFDNTYKLLNLEVLDA 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + AR+ L G GGS +C D+ HKF+RI + D H+ M S + + E DV + Sbjct: 121 SIAAISNARRIYLLGIGGSGIVCQDLYHKFVRIDADVVYFDDFHLEMSSLTHITENDVTI 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG+T ++ A +LA+ GA I IT + +AK +D++I P E+ + + ++ Sbjct: 181 ALSYSGQTREIIMAQKLAQDKGATTIAITQVGRNELAKNSDFVINIPKEESEVRLGSIAS 240 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 R L + D ++ VA+ NIE+ + T + Sbjct: 241 RFSMLAISDLLYLGVAKNNIEETRRKIVNTRDTIKSIRN 279 >UniRef50_B0N1V0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N1V0_9FIRM Length = 277 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 125/276 (45%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ Q T E I +++L+ + + + E S A I++ SK LG+ Sbjct: 1 MNSYAKIKEAQSSYTSTEKVIAKYILENAADVLKCSAQSLGEKTGTSAAAIIRFSKKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +GF L+ +L E+ + + ++ + +K + + T+++ +++ +++ Sbjct: 61 NGFSELKMSLAQSKRAPEEKIDFIIDENDDIVTLADKCCRLNMNTVLKTYQLIDTNQLDN 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A + A L+G GGS + DV+ K RIG + D H+ + + + + D L Sbjct: 121 AIKKLIAANTIYLFGVGGSAIVAQDVEQKLTRIGKKVIYNKDLHVQLTFSESMNKEDAAL 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T + ++ K II IT +P++KL+D I+ P E + S+ Sbjct: 181 FISYSGTTKGLVEIAKMIKNKNVPIISITQFKPNPLSKLSDIILQVPNEEKEIRMGAISS 240 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 RI L + D + V + ++ + +T IV Sbjct: 241 RISSLVMTDLLYYGVFKNDLTGNKDKLIETKRIVSK 276 >UniRef50_A6UCC0 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=A6UCC0_SINMW Length = 296 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 129/290 (44%), Gaps = 1/290 (0%) Query: 2 SQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSE 61 + + ++ + +R+++ + +++ ++ E +L I + AE VS+ Sbjct: 3 TNALQPKSIGGNNNILEVIRLRRADLRKSDRKVAELVLADPKRVINATIAEAAEWAGVSQ 62 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 +++ +G G+++ + L + S + + P V K+F+ T+ ++ Sbjct: 63 PTVIRFCASIGCQGYQDFKLRLAQSLALGMSATHSVIDASDTPAQVSAKIFDYTITSLDW 122 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 ++ ++ ++ RA +A + + +G G S + D Q KF GV C A DAH +M Sbjct: 123 VRNHLDPVQVSRAIDALSKASRIEFFGFGASGIVARDAQQKFPLFGVPCGAETDAHQQIM 182 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 S+L+ GDV +V++++G T + A+++G ++I I S P+ + D ++ Sbjct: 183 VVSMLKPGDVAVVISNTGATLAIIETARRARESGCQVIGIVGS-DGPLVEFCDIVLMVET 241 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 E + +RI LT++D SVA + + + Sbjct: 242 LENTNIYTPTISRIAALTVIDILSTSVALRRGAEHVDLFTGMKRNLRYLR 291 >UniRef50_D1ALE3 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ALE3_SEBTE Length = 282 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 134/276 (48%), Gaps = 2/276 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L + ++ T +E+++ ++ K I++++ A+ E I++ K GF Sbjct: 7 NLFNKINSLKKSFTASETKVFNYIEKNPESVVRMNIRELSNAIDTGETTIIRFCKKTGFK 66 Query: 75 GFRNLRSALEDYFSQSEQV--LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G+ + + +L S+ +Q ++ DE + ++N + + + S++N + + Sbjct: 67 GYNDFKISLISSLSKEKQSNKYKIDILADENYNSIAEGIYNNSFNVLKDTLSLINNEILD 126 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + A+ + G G SN D ++KFLRIG ++ D H+ M+AS+ DV+ Sbjct: 127 KCINLINNAKHIEFIGIGHSNLTAQDAKYKFLRIGKSVASHSDPHLFKMAASISDREDVI 186 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++ +G T +V +++ AK GAK I IT++ + I K ADY++ + E L + S Sbjct: 187 IGISQTGETREVIDSLQSAKVRGAKTIAITNNDKTEITKYADYVLLNGFNEELLETGSFS 246 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 RI QL +++ ++ V N ++A T V Sbjct: 247 ERISQLFIIELLYLGVLSKNKDKAMELKDLTIKAVT 282 >UniRef50_Q2G836 Transcriptional regulator, RpiR family n=4 Tax=Proteobacteria RepID=Q2G836_NOVAD Length = 296 Score = 271 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 72/295 (24%), Positives = 143/295 (48%), Gaps = 4/295 (1%) Query: 1 MSQSEFDSALPNGI----GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEA 56 M S S +R M++ ++I ++++ +I D+A Sbjct: 1 MPSSPQSSVTETAHLPVENALTRIRSALPQMSKTAAKIAAYVVEHPADVVGMSITDLAAL 60 Query: 57 LAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITL 116 + SE ++ + +G GF++L+ +L Q + +L +++ + V KVF+ + Sbjct: 61 VDASEGSVINFCRSIGLGGFQHLKLSLAQEIVQPVHFIHEDLEREDSTETVCRKVFHSGI 120 Query: 117 RTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDA 176 + + + S+++ + A AR+ ++YG G S I D ++ LRIG+ + D+ Sbjct: 121 QALRDSLSVLDPKAMAAAVDIIRAARRVEIYGIGSSAPIAEDAHYRLLRIGLDARVVIDS 180 Query: 177 HIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYI 236 H+ +SAS + VL ++HSG T++ AA LA + GA+ I IT+ SPI AD + Sbjct: 181 HVQAISASRCDKDVAVLTISHSGSTNETVAATRLAHEAGARTIVITNFGRSPIQAYADVV 240 Query: 237 ICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + + A ET ++RI QL ++DA ++A + +++ +++T ++ Sbjct: 241 LFTMARETRFRTEAMTSRIAQLCVIDALIAALALADYDRSTDVLKQTFDVLSIKR 295 >UniRef50_C9AZQ1 Phosphosugar isomerase transcriptional regulator n=2 Tax=Enterococcus casseliflavus RepID=C9AZQ1_ENTCA Length = 283 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 144/281 (51%), Gaps = 1/281 (0%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + + ++ + ++ E I +++L+ + +I D++ L ++++ + +K LG Sbjct: 2 TVSIRLQIKTLYKDLSLKEQAIADYILENPSKVSHSSISDLSNELGIADSTFFQFTKKLG 61 Query: 73 FSGFRNLRSA-LEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 ++GF++ + A L S + + + + KVF+ + T+ + ++++ +++ Sbjct: 62 YNGFKDFKMAMLMQENDFSAISIHENIQKSDNELTMAQKVFDSNMTTLTDTKNLLKEEDL 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 AA Q+++ +G GGS + D HKFLR + D HI +M ASLL D Sbjct: 122 KLAAAMINQSKRLFFFGVGGSEIVATDAYHKFLRSPITVFHSSDYHIQLMEASLLTPDDC 181 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + ++H+G++ + ++AK NGAKII IT SP+AKL D + S + ET Sbjct: 182 GIFISHTGKSRETIELAQVAKNNGAKIIVITSHAASPLAKLGDVVFISISEETEFRSEAL 241 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++RI QL+++D+ +V + +N ++A ++ K + Sbjct: 242 ASRIAQLSIMDSLYVILMFINRDKAQQSIAKIRRSISKIKE 282 >UniRef50_C4FUK3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUK3_9FIRM Length = 280 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 119/276 (43%), Gaps = 2/276 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ E MT E I ++L+ + ++ A S A + +K +G+ Sbjct: 1 MSCITKIKSALESMTATEQMIGRYILEHRHEVLEMNTLELGWASGTSGAAWTRFAKKMGY 60 Query: 74 SGFRNLRSALEDY-FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G L+ L + + L + +++K I + + +++ + Sbjct: 61 KGLPALKLDLAQDRTDEEMPEVDLFLDPRDTLGALLHKTQTILEQNLRRTYELIDEAVLA 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A A + L G GGS +C D+ HK RI D H++M + GDVV Sbjct: 121 QAIDMMASAHRLFLCGIGGSGIVCMDLVHKLTRINRPVTYDRDTHVLMAQMAHCMPGDVV 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITH-SYHSPIAKLADYIICSPAPETPLLGRNA 251 LVV++SG T V LAK+ GAKII IT + +P+A LAD + P E + + Sbjct: 181 LVVSYSGNTHTVNQMAYLAKEQGAKIIAITGHNLKAPLASLADVCLFIPRDEKEIRLGSV 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++R L + D + VAQ ++ KT ++ Sbjct: 241 TSRDGSLIVTDLLYYGVAQRQFHATKEHLVKTRKMI 276 >UniRef50_A9BXM8 Transcriptional regulator, RpiR family n=16 Tax=cellular organisms RepID=A9BXM8_DELAS Length = 323 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 5/280 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + + E R+ +L ++++AE VS+ +V+ + +G+ G Sbjct: 43 MLDRITASLPSLAPAEQRVARLVLADPRAFARQPVRELAERAHVSKPTVVRFCRSMGYDG 102 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + + L S+ + + D+ DV+ KV + + ++ ++ + I +AA Sbjct: 103 LADFKLKLAGSVSEGVPFIHRSVDTDDKTSDVMVKVVDNAVAAFLQYRNAASTTAIEQAA 162 Query: 136 RFFYQA----RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + R+ + YGAG S + D QHKF R+GV A D H+ +MSA+LL GD Sbjct: 163 QAIASTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGVTSLATSDGHMQVMSATLLGPGDC 222 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 +++++SGRT D+ A ++A+KNGA I IT S SP+A + + PE Sbjct: 223 AVIISNSGRTRDLMDAADIARKNGATTIAITASG-SPLASACHIHLAADHPEGYDRYSPM 281 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +R+L L ++D VA +++ + Sbjct: 282 VSRLLHLLVIDVLATCVALRIGPALQPALEQMKNNLRAKR 321 >UniRef50_C0D6A5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6A5_9CLOT Length = 282 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 132/276 (47%), Gaps = 6/276 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + LR ++ E+++ E++LK + ++A+ S A +V++ K + Sbjct: 6 MSVLIKLRD-YRNLSAAENQVREYILKYPKKVLEYTVYELAKESFTSPATVVRLCKKIDI 64 Query: 74 SGFRNLRSALEDYFSQSEQVL-----PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GF L+ L + + + + + +++P ++ K+ NI ++TI E + +VN Sbjct: 65 KGFARLKVLLAEETKYFQDMKLNLLDTTTIEKNDSPHAIIEKITNIAVKTIEETRVLVNE 124 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + AR +A D YG G S+ + D Q+KF+RIG Y + A Sbjct: 125 KQFMQVARLLQKAVIVDFYGVGASSPVAIDAQYKFMRIGKNVITYQLYDRQYVQAVNSDA 184 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 V +++++SG T ++ + +KNG ++ +T S + + ++ADY + A ET Sbjct: 185 SHVGIIISYSGETKEMLKIAGILQKNGTPVVAVTSSGENSLNRIADYNLFVTAKETVFRS 244 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 ++R QL ++D + L+ +++ +Q+T Sbjct: 245 GAMASRTAQLYIIDILYALYCSLDYDESIKKIQQTR 280 >UniRef50_A9KMQ5 Transcriptional regulator, RpiR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMQ5_CLOPH Length = 285 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 123/283 (43%), Gaps = 5/283 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + R + + +E ++ + L + I +AE VS+ ++ K +GF Sbjct: 2 TNIEIKTRSIMDSLNNSERKVATYFLNNIENIFSIPIARLAEESGVSQVTWIRFCKAIGF 61 Query: 74 SGFRNLRSALEDYFSQS-----EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G ++L+ +L + S + S++ + + N + N TL+ + + +++ Sbjct: 62 DGLKDLKKSLFMELNSSTSEGIDTSDFSDIKKHSTLEQMCNTIRNTTLQAVEDTIKLIDY 121 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 D + + +A L+G G S + D K LRI D H ++ + + Sbjct: 122 DTLKKVVSILSKASCIKLFGVGASALVADDFCKKLLRINKNVNFSYDMHTQLVYGANARP 181 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV ++ ++SG T ++ ++LAKK+ I IT SP+ ADY I APE Sbjct: 182 EDVAVIFSYSGTTKEMLEIMDLAKKSNCPTIVITKYTKSPLVASADYSIYISAPEINYRS 241 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 S+RI QLT++D F S+A N ++K+ + Sbjct: 242 GAMSSRIAQLTIVDLLFTSLANKNYTSVEKYLEKSSEVCRSHR 284 >UniRef50_A6LVH8 Transcriptional regulator, RpiR family n=8 Tax=Firmicutes RepID=A6LVH8_CLOB8 Length = 282 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 142/275 (51%), Gaps = 1/275 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ G++ E I +++L+ +I +++ L V+++ + + +K LG+ Sbjct: 3 VSVRLKIKSLYNGLSAKEQNIADYILENPISVAHNSISYLSDELNVADSTLFQFAKKLGY 62 Query: 74 SGFRNLRSA-LEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 SGF+ + A L + + S + ++ D+ + KVF+ ++T+ + I+ +D++ Sbjct: 63 SGFKEFKMAILIEENNFSTTSIHEKIEIDDNELTMAQKVFDSNIKTLTNTKKILGLDDLK 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +AA + +G GGS + D HKFLR + D HI +M ASLL D Sbjct: 123 KAAEIISNSNLLYFFGVGGSGILAEDAYHKFLRSPAHVRHSTDYHIQLMEASLLTPQDCA 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++H+G++ + E+ K+ GAK+I IT SP+AK+ D + S + E S Sbjct: 183 ICISHTGKSKETIRIAEIVKEAGAKVIVITSHASSPLAKIGDVVFISISEEIEFHSEALS 242 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +RI QL++LD+ +V + +N E++ + K + Sbjct: 243 SRISQLSILDSLYVILMFMNKEKSKEALSKVRRTI 277 >UniRef50_A4TMJ1 RpiR-family transcriptional regulatory protein n=22 Tax=Gammaproteobacteria RepID=A4TMJ1_YERPP Length = 292 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 136/282 (48%), Gaps = 4/282 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + L Q +T + RI ++L +I D++ EA I++ + L Sbjct: 9 KPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTL 68 Query: 72 GFSGFRNLRSALEDYFS----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 G+ GF++ + L + +L +++ + + +K+ + + E ++++ Sbjct: 69 GYKGFQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLS 128 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 ++ + + + A + ++G G S D + K +RIG+R A + H M M ASL+ Sbjct: 129 IESVEQVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMN 188 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 GDV + ++HSG +++ A++LAK+ GA + +TH+ S I +LADY++ + + L Sbjct: 189 PGDVAIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQ 248 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 G + +I QL +LD + + + + QA +KT V Sbjct: 249 GDSIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQ 290 >UniRef50_A6LUR0 Transcriptional regulator, RpiR family n=2 Tax=Clostridium RepID=A6LUR0_CLOB8 Length = 281 Score = 269 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 136/281 (48%), Gaps = 4/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + Y++ + T+ E I ++L++ + + +D+AEA S +V+ +K +GF Sbjct: 1 MNVLQYIKQNYDSFTDREKLIADYLIETKERIISMSARDIAEATKTSAPTVVRFAKKIGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAP---QDVVNKVFNITLRTIMEGQSIVNVDE 130 + L+ L S+ E+ + + + ++++ + + + S+++ + Sbjct: 61 NTLNELKLKLSINISKEEEAGAIQFQYLDNDLGTKNIIYGIKQSVDSIMEQTVSLLDEEC 120 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + +A A+ ++ G S + D +K R+ RC D H+ + S+ LL+EGD Sbjct: 121 LDKAIELLISAKNIYIFSVGVSGLVGQDFYYKLSRMNKRCICNTDTHLQITSSVLLEEGD 180 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICIT-HSYHSPIAKLADYIICSPAPETPLLGR 249 V L +++SG T +V V+ A+ +I IT S ++ IA ++D +I PA E + Sbjct: 181 VALAISYSGETKEVIKCVKNARNRKVPVIAITKASVNNTIADISDIVIRIPAVEKSIREG 240 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 S+RI QL ++D ++ + + NI++ + T V Sbjct: 241 AISSRISQLAIIDMLYIGMIRNNIKEVEEKLISTRKAVKEL 281 >UniRef50_C8W838 Transcriptional regulator, RpiR family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W838_ATOPD Length = 304 Score = 269 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 4/270 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 G+ L ++ + E I++++L +I +A S + +V++ K LG Sbjct: 3 GVRLRLEEYRKNASSAERDIIDYILSDPEAVVGQSIHKLAAQTYTSASTVVRLCKKLGCG 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELA---FDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G++ + AL + S + + + ++ KV + ++ +++ + Sbjct: 63 GYKEFQQALIYELAVSNKSNDIAVGGVIAGDTTDVIIEKVTAKNISSLELTMQLLDAQVV 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 QA L+G G S + D+Q K +R+ + C D H ++ A + D+ Sbjct: 123 DSVVSLMMQAHSICLFGMGASLLVARDLQLKLMRLNINCNLSDDYHSQLLYAKNMSREDL 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSY-HSPIAKLADYIICSPAPETPLLGRN 250 +VV++SG T + +AK NGAK+I IT S + +DY++ E + Sbjct: 183 AIVVSYSGLTREAIECAWIAKANGAKVISITRGGIDSELIHRSDYVLGVAETEHIMRSGA 242 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINM 280 S+RI QL ++DA F + N E++ Sbjct: 243 MSSRIAQLNVVDALFAAYVNRNYEKSVKRF 272 >UniRef50_A9M040 RpiR/YebK/YfhH family transcriptional regulator n=24 Tax=Neisseria RepID=A9M040_NEIM0 Length = 282 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 136/277 (49%), Gaps = 2/277 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + ++ E ++ E L A+ ++AE +VS+ +++ + LG+ G Sbjct: 1 MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKG 60 Query: 76 FRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 + AL + + EL D+ VV KV +++ + + E+ A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ + YG G S + D QHKF R G+ AY D H +M+AS+L + DV++ Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVA 180 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++G + ++ AV +AK+NGA +I +T + SP+A+LAD ++ E L +R Sbjct: 181 ISNTGSSIELLDAVSIAKENGASVIALTRN-DSPLAQLADCVLSVATQENAELYTPMVSR 239 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +LQL ++D + +A + A++ +QK+ + Sbjct: 240 LLQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKH 276 >UniRef50_D0W145 Transcriptional regulator HexR n=3 Tax=Neisseriaceae RepID=D0W145_NEICI Length = 315 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 2/272 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + ++ E ++ E L A+ ++AE +VS+ +++ + LG+ G Sbjct: 1 MLSKISESLADLSGAERKVAECALAKPKWFVHAAVAEIAEHSSVSQPTVIRFCRSLGYKG 60 Query: 76 FRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 + AL + + EL D+ VV KV +++ + + E+ A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMSSVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ + YG G S + D QHKF R G+ AY D H +M+AS+L DV++ Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSSEDVLIA 180 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++++G + ++ AV +AK+NGA II +T + SP+A++AD ++ E L +R Sbjct: 181 ISNTGSSIELLDAVSIAKENGASIIALTRN-ESPLAQMADCVLSIATQENAELYTPMVSR 239 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 +LQL ++D + +A + A++ +QK+ Sbjct: 240 LLQLAVIDILAIGLALRLGDAASLQLQKSKKA 271 >UniRef50_Q184N2 Putative phosphosugar-binding transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q184N2_CLOD6 Length = 283 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 144/279 (51%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L+ E +TE + +I +++L ++ ++A S A IV+ S+ +G+ Sbjct: 1 MSCILKLKQIYEDLTEVDKKIADYILNNTEAISKLSVSELASNSKTSTASIVRFSRKMGY 60 Query: 74 SGFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 SGF +L+ + + + + +D V+NK+ N + TI + + + D I Sbjct: 61 SGFGDLKIEIAKDLMGKENEYTYVDENYDCNIDSVINKITNKNIETINQTRLLNEKDIIK 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A +A+ ++G GGS + D+Q K LRI + D+H +M +S + + D+ Sbjct: 121 EAVEQIIKAKNVYIFGVGGSALVALDLQMKLLRINKQAFTSLDSHTQLMVSSNVDKEDIA 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++SG + +V ++E AK G K+ICIT + ++K++D + P E L S Sbjct: 181 IAISYSGESKEVIKSIENAKLKGCKVICITKYSDNHLSKISDLKLVVPNIEKRLREGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +RI LTL+D ++S+ Q N+ +A +Q+T I+D+ + Sbjct: 241 SRIAMLTLIDIIYISIIQENLNEAEQKLQETKRILDYLN 279 >UniRef50_C4KZ09 Transcriptional regulator, RpiR family n=85 Tax=Bacillales RepID=C4KZ09_EXISA Length = 301 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 2/294 (0%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 + + + L + + +E MT E +I +++L L K++A+ VS Sbjct: 8 IKEQQLQEGDDQMESLLTKIDLAKEDMTAVEKKIADYILSHSTLIPNMTTKELAQKTDVS 67 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRT 118 EA IV+ ++++G F+ + AL + +E L + L + P D KV ++ Sbjct: 68 EASIVRFARVVGIDSFKAFKLALVKDLAVTETTLTDFNVLQQKDTPYDSFQKVIHVNKAA 127 Query: 119 IMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHI 178 I ++ E+ A F +A + YG GGS+ D Q+KF ++G PD H Sbjct: 128 IEACAEAMDKRELEHAVDLFARASRVIFYGVGGSSTAAIDAQYKFTKLGYAATTSPDFHY 187 Query: 179 MMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIIC 238 M+ L + DV + ++ SGRT DV V AKK +I IT+ SP+ + AD +C Sbjct: 188 MLSLIPHLGKSDVFVAISTSGRTKDVLELVRFAKKKRVPVIAITNLDKSPLYREADVRLC 247 Query: 239 SPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +P E+ + ++R+ QLT++D ++ + E + + Sbjct: 248 TPNVESDFRIASIASRMTQLTIIDTLYMGLLHRKGEGLIDRYAEARDEMVKLRR 301 >UniRef50_A0KFB6 Transcriptional regulator, RpiR family n=3 Tax=Gammaproteobacteria RepID=A0KFB6_AERHH Length = 286 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 141/286 (49%), Gaps = 8/286 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + ++ +E +I +++L + +++A+ VS++ IVK ++ +GF Sbjct: 1 MLTLSKISNIRSQLSPSELKIADYILACPEQVTHFSSQELAQQADVSQSSIVKFTQKIGF 60 Query: 74 SGFRNLRSALEDYFSQSEQ-------VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 GF + A+ + + L + + D+ + + K+ + +I+E + Sbjct: 61 KGFTAFKLAVSEDLGRKHAIKTDNVGDLYNGIGRDDDLETMAKKLAQEKINSIVETTQAL 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + + R QA + L G GGS D+ +K L+IGV D+H+ + A L Sbjct: 121 DNATLARVLDVINQAGRVQLVGIGGSALTAKDLWYKLLKIGVTTLFAQDSHVQISIAQTL 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 GDV LVV++SG + DV AA ELAK+NGA +I +T ++P+ ++AD ++ + A E L Sbjct: 181 GPGDVQLVVSYSGASRDVLAAAELAKRNGATLIAVTSFRNTPLRQMADMVLDTVADENEL 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + S+R Q T+ D F+ + Q ++A + T +D + Sbjct: 241 RISSISSRTAQNTITDILFLGLVQRR-DEAWALIDGTRGAIDRLNK 285 >UniRef50_Q04DU1 Transcriptional regulator n=2 Tax=Oenococcus oeni RepID=Q04DU1_OENOB Length = 282 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 134/277 (48%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R E + E RI +++L + I+ +++ + +S A I + ++ LG+ Sbjct: 3 NVTETIRSYYEKLHPGEKRIADYILSHQDSVMDATIQSLSDKIGISTASISRFTRHLGYP 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 FR+ AL S +E+ + + +V K+F+ + + + +N+ ++ R Sbjct: 63 NFRDFLIALSASKKNSSSDFFTEIKQSDQSEQIVKKLFSAGIAALTATAANINMKDLDRV 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + + + +G GGS+ + + HKFLR + ++PD I +M A+ L D+ +V Sbjct: 123 VDWLVSSNKIGFFGIGGSSIVAFNAYHKFLRTNLNIVSHPDYDIQIMQAAHLTSEDLGIV 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSGR D ++NG+KI+ IT SPIAK AD ++ S + E + S+ Sbjct: 183 ISHSGRNQDTLLVENKLRENGSKIVAITAFPESPIAKNADIVLNSYSEEVNFRQESMSSL 242 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + Q+T++D F V EQ + + +++ Sbjct: 243 VAQITIIDTLFTLVGHRLNEQTDQVINSMRRVIEQTR 279 >UniRef50_A8F3D9 Transcriptional regulator, RpiR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3D9_THELT Length = 276 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 129/278 (46%), Gaps = 9/278 (3%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ Q+ T+ E+ + ++++ + +I ++ + L + + +V+ + LGFS Sbjct: 4 DVQTIIKANQKQFTKKENELAQFVIDHPDEVIHMSITEIVDELRIGQGTVVRFCQKLGFS 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV--NVDEIH 132 GF + AL + E+ E +D++ V ++ I E ++ N ++ Sbjct: 64 GFHPFKIALAKSLGRQEE-------ASEGSKDMLAMVKEDHIKAIEETSKLLKLNEKVVY 116 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + A R+ L G G S D +KF+RIGV + D H MS S E D V Sbjct: 117 QCAEKISNCRRLYLLGVGASGVTALDAYYKFMRIGVDVKYMLDPHFQAMSLSGCNEKDCV 176 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + + SG T+ V ++AK+N A +I +T SP+ AD+++ + E P Sbjct: 177 VAFSQSGSTAVVVDMAQIAKQNKACVIAVTGYNKSPLTFYADFVLLTAVRENPFQSGAIR 236 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++I QL +L+ F L ++A N+ +T V+ + Sbjct: 237 SKIAQLHVLEVLFEQTKLLLADKAKQNVDRTARSVEKW 274 >UniRef50_A8FIY5 Possible RpiR family transcriptional regulator n=4 Tax=Firmicutes RepID=A8FIY5_BACP2 Length = 286 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 132/274 (48%), Gaps = 1/274 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++R ++ + +I ++L+ +I +A SE I + + +G+ Sbjct: 8 NIFSHIRTTFHSLSPTQKKIANYILENPQKVVLHSISALASECNTSETTIFRFLRKIGYE 67 Query: 75 GFRNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 ++ R + + + Q + E+ ++ D+ +KV +T +I + + IV + + Sbjct: 68 SYQVFRVHVAQDIATNTPQSIYGEIEASDSVADIKHKVIELTTNSIQDMKHIVEDHAVTQ 127 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 QA + +GAG S+ I D HKFL++G D H+M M A+ E D ++ Sbjct: 128 FIEQMKQAHKTVFFGAGASSFIAGDAYHKFLQLGFDVSLCSDPHMMNMIATHATEHDFIV 187 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++HSG + ++ AV+ AK+ GAKI IT S +AK +D+ + S + ET + + Sbjct: 188 AISHSGESREILDAVQFAKEKGAKIASITSYPKSELAKRSDFHLLSSSRETTYRSDSMIS 247 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 RI QL ++D +V+ A N++++ V Sbjct: 248 RINQLVIIDVLYVAAVLELGSNAIENVKRSRLAV 281 >UniRef50_C4DDH7 Transcriptional regulator, RpiR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDH7_9ACTO Length = 342 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 131/287 (45%), Gaps = 8/287 (2%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + +R G+ +E RI E +L + + + ++A A S +V+ + +G Sbjct: 9 PRTVLVRVRAALPGLRPSERRIAEAILDDPHATAGLTVAELAAACDTSTTTVVRFYQRIG 68 Query: 73 FSGFRNLRSALEDYFSQSE------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 + +++LR L ++ + ++ D+ D++ KV +I + I+ Sbjct: 69 YGRYKDLRLDLTREATREQLETANLPAASGDIDRDDTIDDIIAKVAANETLSIADTAEIL 128 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + D + RA AR+ D +G G S + D+Q K RIG ++ D +A L Sbjct: 129 DRDALARAVDCVLNARRVDSFGVGASGFVGLDLQQKLTRIGRTALSWLDTDAAWSAAVTL 188 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 E V + ++H+G T+ + +A GA I IT+ ++ +A+ AD ++ + A ET Sbjct: 189 DEQCVAIAISHTGTTAATVEFLAMAAAEGATTIAITNHDNTALAETADVVLTTAARETRF 248 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 +RI QL ++D F VA+ + + + ++KT A V G Sbjct: 249 RSGALGSRIAQLMVVDCLFTGVARASYDASMSALRKTYAAV--HRKG 293 >UniRef50_A0AJB4 Complete genome n=7 Tax=Bacillales RepID=A0AJB4_LISW6 Length = 283 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 128/282 (45%), Gaps = 1/282 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + + + + +E +I + +L + +I +A+ S A +V+ K + Sbjct: 2 SSGSIINRIEGILHDLPTSEKKIGQTVLANPEFTTTASIHKLAQKADASGAAVVRFCKSI 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G F L+ L +Q +++ ++ +E + +K+ + ++T+ + S ++ ++ Sbjct: 62 GLQSFPELKRQLSLDLAQPQKIGYYDIEPNEDFHTITDKLVSNMMQTMNDTASQLDETKV 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A A YG G S + D+ K+LR G A DAH++ M+ + + V Sbjct: 122 LTACDLLGDADTIYTYGVGASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKRKSV 181 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRN 250 + +++SG TS+V V+ AK N +I +T ++ + + AD + + APE + Sbjct: 182 FIAISNSGETSEVLQLVDQAKLNDVTVISLTRFGNNKLKEKADLALETSRAPEAEIRSTA 241 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 S+R QL ++D F A + ++ ++++ + F Sbjct: 242 TSSRQAQLLVVDILFYYYASHHYDEMIQQIKQSREATNRFRE 283 >UniRef50_C6L9A2 Transcriptional regulator, RpiR family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L9A2_9FIRM Length = 336 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 117/261 (44%), Gaps = 4/261 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + +T + ++ +++ + +I +AE VSEA I + + LG S Sbjct: 55 NILDLITEQYPTLTRSGKKLADYIFANTTETQYLSISALAENSGVSEATITRFCRKLGLS 114 Query: 75 GFRNLRSALEDYFSQSE----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G+ + + A+ ++ PS + ++ D+ K+ + + ++ E +++ E Sbjct: 115 GYNDFKLAIAKSDHVTDMGEPSGSPSTITSQDSLPDIFQKLLSANILSLTETFDLLDEKE 174 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 I RA Y A G G S+ + + +F R D+H+ M+S +L D Sbjct: 175 ISRAVDLLYGAHHVYCLGNGSSSVMAMEAWARFSTASTRFIHIADSHMQMLSIALATPQD 234 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V+L ++SG T D++ + +A K +I +TH S A AD + E+PL + Sbjct: 235 VILFFSYSGATRDMEDIMNIAHKRKIPVILVTHFPKSQAAAFADVTLLCGYNESPLQSGS 294 Query: 251 ASARILQLTLLDAFFVSVAQL 271 +AR+ Q+ ++D F Sbjct: 295 IAARMGQMLIIDCLFHGFCLK 315 >UniRef50_Q02VU4 Transcriptional regulator n=4 Tax=Lactococcus lactis RepID=Q02VU4_LACLS Length = 282 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 135/279 (48%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L +R + +++++ I ++L+ + + +I++ A+ VS A I + SK +G Sbjct: 2 SRTLISRIRSYYDNLSKSDQAISDYLIANIDSAAMLSIQEFAQKTQVSTATISRFSKKIG 61 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F+ F+ L+ A+ S + SEL+ + ++++ K FN + ++ ++++ ++ Sbjct: 62 FNSFQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLD 121 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + +A +G GGSNA+ HKFLR+ + C + D H M A+ L D Sbjct: 122 QTMEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDCA 181 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 V++H+G+ D VE+ K G II +T SP+AK AD + S + E + Sbjct: 182 FVISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAVA 241 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + + Q++LLDA F+ + + + + ++ Sbjct: 242 STVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSR 280 >UniRef50_D1AUV3 Transcriptional regulator, RpiR family n=5 Tax=Bacteria RepID=D1AUV3_STRM9 Length = 272 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 134/279 (48%), Gaps = 7/279 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ ++ E ++ ++++K + C + ++ + + VSEA IV+ K +GF Sbjct: 1 MKYITLIQSFYPSFSKQEIKVADYVIKEKDAICFMPLHEITKKINVSEATIVRFVKKIGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF + + + + E + + + + TI ++++N +++ Sbjct: 61 KGFIDFKLEVAREIATIE-------DERNTKEHYIENIEYNIIETIKNTKNLINKEDVEN 113 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A +++ ++G G S + Q++F+R G + D H +M AS E DV++ Sbjct: 114 AIEAIENSKKLYVFGMGASGVAALEFQNRFMRFGKIGHSVSDGHFQVMYASTTTEKDVIV 173 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++ SG T D+ + +AK+NG KII IT+ SPIAKL+D +I + ET L G + Sbjct: 174 VISLSGETVDLIYPLSIAKENGCKIIAITNYILSPIAKLSDIVILTSGKETLLNGGALVS 233 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++ QL ++D A N ++A + Q + + Sbjct: 234 KMSQLYIIDVLATGYALRNSKKAKLVRQGMAEAIANKNK 272 >UniRef50_C3WE65 Transcriptional regulator n=5 Tax=Fusobacterium RepID=C3WE65_FUSMR Length = 284 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 5/265 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ + + ++ E ++ E++L+ + ++A S+A +V+ +K LGF Sbjct: 1 MGVLIKINSMLDNISSTEKKVGEYILENPDKIKDLNTYELANITKTSQATVVRFAKRLGF 60 Query: 74 SGFRNLRSALEDYFSQSE-----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GF + AL + ++ E+ D++ + + K+ N + I + + + Sbjct: 61 KGFPAFKLALSQDLGNRKAESHVNIMHEEIKPDDSFEIIGRKISNENITAISDTYEVTDF 120 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 E+ +A +AR+ L G G S + D +K L +G D H+ + S + E Sbjct: 121 TELEKAVVMLSKARKIMLAGIGFSGIVAKDFYYKLLELGKHAMIEVDTHMQLSCLSTMGE 180 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DV+ V++HSG+T ++ V++AK G +I +T +PI LAD + + + Sbjct: 181 DDVLFVISHSGKTMEMYNVVKVAKSKGITVIAMTSIAPNPIKDLADIRLNTVEMNSNFRS 240 Query: 249 RNASARILQLTLLDAFFVSVAQLNI 273 S RI QLT++D +V + N Sbjct: 241 TALSPRISQLTVIDMLYVKMMLENK 265 >UniRef50_C1XRD4 Transcriptional regulator n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XRD4_9DEIN Length = 264 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 2/265 (0%) Query: 27 MTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDY 86 MT RI +++L + + +VA+A SEA +V+ + LGF GF++ + AL Sbjct: 1 MTPALERIAQYVLHNADQVIYQTVIEVADAAGSSEASVVRFCRDLGFQGFQDFKLALASD 60 Query: 87 FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 S +LP + + Q + V+N + + E + ++NVD + +AR+ D Sbjct: 61 LVTSPVILPKQEKPT-SAQSTADYVYNTARQVLDETRRLMNVDLLEEVVERILKARRIDF 119 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 YG G + D K R+G AYPD H +SA+ L D+ ++ SG + D Sbjct: 120 YGVGNAGTTAQDFAQKLQRLGCAAIAYPDPHSAAVSAATLGPKDLAFGISVSGSSIDTVK 179 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 A+E AK GA + +T SPI + AD ++ + APE+PL + A+I QL LLD F Sbjct: 180 ALEQAKLAGAYTVAVTRGARSPITRFADAVLLTSAPESPLTRGSMGAKISQLMLLDFLFT 239 Query: 267 SVAQLNIEQANINMQKTGAIVDFFS 291 A + + + KT A V S Sbjct: 240 RTALRHP-KGAELLSKTAAAVADRS 263 >UniRef50_B6GA31 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA31_9ACTN Length = 281 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 4/273 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L+ ++ + E ++E +L +I ++A VS + I ++ K LG Sbjct: 2 VSLLVRLKQYRDNASPAERELIERILDDPESISGLSIHELAAYAFVSPSTITRLCKKLGL 61 Query: 74 SGFRNLRSALEDYFS---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G++ + L + +S +LA + + + KV + ++ + + + + Sbjct: 62 KGYKEFQHLLIYDLALLRESSSSKIEDLAPTDTSRQTIEKVTRDNIDSLRLVEKLNDPET 121 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 AR +L+G G S D+ +K LRIGV C D H ++ AS D Sbjct: 122 YEACVDLMSDARTINLFGMGASLLSARDMHYKLLRIGVSCNLIDDWHGQLLCASNSGPED 181 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSY-HSPIAKLADYIICSPAPETPLLGR 249 + + +++SG T +V V A++ G K+I IT S S +A+ AD ++ + E + Sbjct: 182 LSIAISYSGLTEEVNVCVGRARERGGKVIAITGSAFDSKLARQADEVLLVGSTEPLMRSA 241 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQK 282 ++RI QL ++D F S N + + +++ Sbjct: 242 AMASRIGQLGVIDILFKSFVNRNYARFSEVLEQ 274 >UniRef50_Q9K6Z8 Transcriptional regulator (Hex regulon repressor) n=2 Tax=Bacillus RepID=Q9K6Z8_BACHD Length = 284 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 3/285 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 +P + L + + E+++ ++LK L K +AE S++ IV+ K Sbjct: 1 MPQTM-LLAKIEQELASFPAAETKVANYVLKHPELVPTMTTKQLAEQANASQSSIVRFCK 59 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSE--LAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 LG F L+ AL ++ E + S L D++P + KV ++ + +N Sbjct: 60 RLGLESFPKLKLALAKELTRKEAYINSASLLETDDSPPILFQKVSSLNQMALDMATKAMN 119 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 A +A++ +G GGS C D Q+KF+R+G A D H M+ +++ Sbjct: 120 EQAFTEAVEQMVKAKKIAFFGVGGSFTSCIDGQYKFMRLGFHSLASGDYHQMIPFITMMD 179 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 E DVV+ ++ SG T +V + AK+ K+I IT S S + + A + P E Sbjct: 180 EQDVVICMSTSGNTKEVLDIADYAKERNVKLIGITASSRSALTRKAAVSLLIPDIEVQQR 239 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + ++R QL ++DA +VSV + + Sbjct: 240 IGSIASRTSQLNVIDALYVSVFHRIGSDLLDAFDASRKKTEEKRK 284 >UniRef50_C3RKW6 Sugar isomerase n=3 Tax=Bacteria RepID=C3RKW6_9MOLU Length = 291 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 118/285 (41%), Gaps = 7/285 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + L + + + +E I +++L G ++K++A+ S A IV++ + LG Sbjct: 1 MSIMTQLEFELD-FSSSEKTIAKYILDNGEDILNLSVKELAKQTYTSPATIVRLCRKLGL 59 Query: 74 SGFRNLRSALEDYFSQSEQV-----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 +G+ + + ++ + ++ + ++ N+ I + ++V+ Sbjct: 60 NGYGDFKIKYSAELQFDKKNKKRVDVNFPFGNTDSNSQIAYRIANLHQEAIEDTLNLVDF 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + QAR+ L+G G S D QHK +RIG + A + Sbjct: 120 KNLDKIINLLDQARRIYLFGNGNSLLAGFDFQHKMMRIGKMVEMRAHAGEQGFLSYTCSP 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL-L 247 DV +++++SG T+++ + KK ++ IT + ++K YI+ + + E Sbjct: 180 DDVAILISYSGETNEMVELAKFLKKMHVPLLGITSIGDNQLSKYCTYIMNTGSREKIFSK 239 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 S++ LLD F + +LN + + D P Sbjct: 240 IAPYSSKTSISYLLDLIFSCIFRLNYDHYINEKINRDKLFDHRHP 284 >UniRef50_UPI000196C511 hypothetical protein CATMIT_02677 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C511 Length = 286 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 124/280 (44%), Gaps = 3/280 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ + T E I E++L+ + + + E S A I++ SK +GF Sbjct: 9 MNAYIRIKEYNDSYTATEKLIAEYILEN--DILQDSAQALGEKTNTSAAAIIRFSKKIGF 66 Query: 74 SGFRNLRSALEDYFSQ-SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 GF +L+ L + +Q + ++ +V K + + T+++ ++N+D + Sbjct: 67 KGFSDLKMNLAQSTKEEKQQEVDLIFEPEDNISTLVEKGCRLNMNTVLKTYQLINIDTLE 126 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 + A L+G GGS+ I D+ K +RIG + D H+ M A + + D Sbjct: 127 ESIDLLNNASTIYLFGVGGSSVIGLDIYQKLMRIGKKVIYNADLHVQMTFAQSMDQNDAA 186 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 L++++SG T+ + + + +I IT +PI+KL+ Y + P+ E L S Sbjct: 187 LIISYSGSTTGLVDVARVLHEKQIPVISITQINANPISKLSTYSLKVPSEEKALRIGAVS 246 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +RI + D + V + N E+ N+ + V Sbjct: 247 SRISSFVITDLLYYGVFKKNFEEHKKNLIDSKDNVSILKK 286 >UniRef50_A4VXR0 Transcriptional regulator n=5 Tax=Streptococcus suis RepID=A4VXR0_STRSY Length = 275 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 131/274 (47%), Gaps = 2/274 (0%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 L E +T E+++++++ + + I +A+ VS A I ++SK +G+S F Sbjct: 4 NILNHSIENLTPTENKLLDYIEENIHRIETMNIYQLADNAGVSTATISRISKKMGYSNFN 63 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 L+ + + + +L + ++ D+ K+ + + + S +N++E+ A + Sbjct: 64 KLKIEIAKS--KYDDLLNAHFTPSDSIDDISTKLIHSITISNQQTVSFLNLEELEAAVKL 121 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 A + L+G G S +C+D +K RIG C D HI M + + GD+ + +++ Sbjct: 122 LQSASRIYLFGVGASGIVCSDFYYKLSRIGKTCIFAQDTHIQMANIATAGNGDLAIGISY 181 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T +V + AK+NG I IT + + +A LAD P E L ++R Sbjct: 182 SGMTKEVVEPLRFAKENGVSTITITGTGKNQLADLADITFRIPRHEHELRVGAITSRSNS 241 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L L D ++++ Q + ++ +++T + + Sbjct: 242 LFLTDLLYLALIQDHKQEITAILEQTKHLTEVIK 275 >UniRef50_C4L7F8 Transcriptional regulator, RpiR family n=2 Tax=Gammaproteobacteria RepID=C4L7F8_TOLAT Length = 292 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 111/277 (40%), Positives = 170/277 (61%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +RM G++ E +I EWLL GN+ +IK VAE L VSE +IVK+SK LGF+GFR Sbjct: 13 AKIRMALPGLSNTERQIAEWLLAKGNVESKTSIKSVAEQLEVSEPLIVKLSKKLGFAGFR 72 Query: 78 NLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARF 137 LR AL +Y S E+ ++ + V+NKVF +++ + E +S+ + I AA+ Sbjct: 73 ELRQALVEYLSSLPIDSEQEIEPTDSVESVLNKVFANSIQAMKEARSVADPILIANAAQL 132 Query: 138 FYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTH 197 + A+ ++G GGS A+C D +HK LRIG+ +AY D H+M+M +S L E DV++V++ Sbjct: 133 IFNAKNVVIFGVGGSAAVCQDFEHKLLRIGILSRAYSDFHMMLMVSSQLDENDVIVVISQ 192 Query: 198 SGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQ 257 SG T ++ AVE AK+ +++ICIT++ S +A+LADY I SPA LLG+NA ARI+Q Sbjct: 193 SGDTRELLKAVENAKQRHSRVICITNNDTSALAQLADYAIFSPAKGGILLGQNAVARIVQ 252 Query: 258 LTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 L LLD F+++ + ++ + + +V Sbjct: 253 LNLLDVLFIAILLQDHDKNREKLTRGSRVVRHLHGKG 289 >UniRef50_A8SDH7 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDH7_9FIRM Length = 281 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 130/275 (47%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L+ Q +T++ + E+L++ + +I +A V+EA + + + LG Sbjct: 2 STNFWELLQQHQGDLTKSGRTVAEYLVQHAAEAQYLSISSLARECQVAEATVFRFCRALG 61 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 F G+ +R AL + V E A D + + + I Q+ ++ + Sbjct: 62 FEGYHEMRIALAQANATGVLVNQQEPAPDADTATLCEHASALFMTAINGTQNALSPQAVD 121 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A + ARQ G GGS A ++ +F I + +A D+H+ +M+ASL+ E DVV Sbjct: 122 QAVALLHSARQVFCMGQGGSMAAAKEICARFACITNKFRAVADSHMQVMAASLMTEQDVV 181 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 L V++SG T D+ + AK NGAKII ITH SP AKLAD ++ A E+PL + Sbjct: 182 LFVSYSGATRDLMETLRTAKANGAKIILITHYEDSPGAKLADIVLLCGAQESPLDSGSIP 241 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ L + + + + + ++T + Sbjct: 242 IKVAVLYVAEVLVLRYILDDKPGSTEAQERTTEAL 276 >UniRef50_A5L3V2 Transcriptional regulator, RpiR family protein n=3 Tax=Vibrionales RepID=A5L3V2_9GAMM Length = 282 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 142/283 (50%), Gaps = 5/283 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ ++ ++S + ++L + ++A+A+ VS++ IVK S+ +G+ Sbjct: 1 MKGIAKVKALLPKLSPSDSLVARYVLDHPQQVKQLSSPELAKAVGVSQSTIVKFSQKIGY 60 Query: 74 SGFRNLRSALED----YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 GF ++ L Y S++ + + ++P V+ K+ +++ + + Sbjct: 61 KGFSEMKVKLYQSDMSYQPVSQRGIHGTITRKDSPDTVMEKLLASKTQSLERTVLLNEGE 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 ++ AA + A + + G G S+ + D +K ++IG A PDAHI + +A+ L E Sbjct: 121 QLSNAADLLHLANKIQISGVGASSLVAKDFAYKLMKIGHAVHAEPDAHIQIANAASLTEN 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV++ +++SG+T +V +LA+ AK+I I+ S + K AD + S A E + Sbjct: 181 DVLVAISYSGKTREVVKVAQLARSKKAKVIVISQLSPSALDKYADIKLISAADENHIRSS 240 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + +AR Q + D F+++ Q EQA+ ++++ + V F Sbjct: 241 SITARDSQFYITDLLFIALTQQ-EEQADQLIEQSKSAVAEFKQ 282 >UniRef50_Q7MD38 Transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=Q7MD38_VIBVY Length = 278 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 132/278 (47%), Gaps = 6/278 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + L LR E ++ + +++L+ + I D+A SEA +V++ + Sbjct: 1 MGSPKNLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +G+ G+ + R AL SQ+E + + D+ + + ++ + +++ Sbjct: 61 DMGYKGYSDFRMALAVDLSQTESRQQNHIE-----GDICDVSAQSAVDSLQDTAKLIDRK 115 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + R +QA G G S+ + + ++ +RIG + + D H+ MSAS +G Sbjct: 116 SLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQG 175 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+ V+ SG T +V A LA K ++ +T+ HSP++ L+ ++ + PE PL G Sbjct: 176 DLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGG 235 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++++ L L+D S+ + + ++Q+T +V Sbjct: 236 AFASKVGALLLVDVLVNSLLES-YPEYKDSVQETAEVV 272 >UniRef50_Q38YX9 Gluconate operon transcriptional regulator, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YX9_LACSS Length = 280 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 1/277 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + LR + +E +I +++ + + I++ A VS A I + +K+LGF Sbjct: 5 IDSLLRSYYDNFSEKYKQIADYIFQESQFNQRLTIQEFAANCGVSTATISRFAKILGFDN 64 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F+ + AL + + + E+ ++ + K+F+ + S++ +++ +A Sbjct: 65 FQAFKMALLAKEANTSPLFH-EINANDTFTTMAEKIFSSNSNALKATWSLLTEEQLQKAV 123 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 +A L+G G S + D HKFLR + D H+ +M A+ L D +++ Sbjct: 124 ALINRAHLLSLFGLGASGIVAQDGYHKFLRTSIPTVFNQDYHLQLMQATKLTNQDCAIII 183 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSG+ D + K+ +I IT +S +AKL D + S + ET A I Sbjct: 184 SHSGQNKDALELARILKERQVPLIVITSFGNSSLAKLGDITLLSISEETNYRAEALHALI 243 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 Q++L+D+ F+ VA N ++ + ++ A +D Sbjct: 244 AQISLIDSLFMMVAVNNGQETEQSFKEIRAEIDRTRQ 280 >UniRef50_C5CG85 Transcriptional regulator, RpiR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG85_KOSOT Length = 275 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 133/276 (48%), Gaps = 3/276 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + L+ + ++E+E R+ +++++ + I ++A+ SEA + ++ K LGFSG Sbjct: 2 IIVQLKGIYDSLSESERRVAKYIIERPDDVIHYTITELAKFSHSSEATVYRLVKKLGFSG 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 +++ + +L S ++V+ E + + Q+ V ++ + E +++++D + +A Sbjct: 62 YQSFKISLARELSIPQEVI--EEGSEGSYQNFVERIVQENISLAKETMAVLDLDALKKAV 119 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 AR+ +G G S + F +G Y D H +M AS L DVV+ + Sbjct: 120 ELIINARRLVFFGVGRSAVVAQSGSFNFALLGFSSTHYIDPHAQVMVASGLTNEDVVVGI 179 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +H+G D +V++A GAK I IT +SPI ++ D ++ + A P +RI Sbjct: 180 SHTGTIRDTVKSVQVAHAAGAKTIVITSGINSPITEVGDVVLYTAA-GKPSTSEFTVSRI 238 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + +LD + +V E+ + + K I+ Sbjct: 239 GEFLILDILYKTVVARMSERLSKHFDKLEEILKPKR 274 >UniRef50_Q13K65 Transcriptional regulator, RpiR family n=7 Tax=Burkholderia RepID=Q13K65_BURXL Length = 287 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 129/281 (45%), Gaps = 2/281 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L P++R + E ++ + +L + + +I ++A+ VSE + + + +G Sbjct: 5 NLIPHIRSALANLRPAERKVADMVLSDVDFAMRASITELAQRAEVSEPSVTRFCRAIGAH 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G R+ + L + + +A D+ Q +++KV + I + ++ + A Sbjct: 65 GLRDFKMQLAQSVAGGVPYASTAVARDDDVQTLMDKVGEAAIGGITHARGALDPAVVESA 124 Query: 135 ARFFYQARQRDLYGAGG-SNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AR+ +G G S + D +FLR+ + A+ D H+ + A L++ GDV Sbjct: 125 IAALSSARRVFFFGVGSGSGLVAQDAALRFLRLDIASTAFTDGHLQRLYAGLMEPGDVAF 184 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++HSGR+ +V ++++AK+ GA I +T+ S +A L D + P + Sbjct: 185 AISHSGRSVEVNESIQIAKERGATTIALTNVG-SRLAWLVDIPLLLRVPSPIDPNTPGVS 243 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 R++ L ++DA + VA + M+ A + +P A Sbjct: 244 RLVHLCIMDALAIGVALKAGPKTLEKMRHAKARLASHAPEA 284 >UniRef50_Q2JBJ8 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JBJ8_FRASC Length = 299 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 130/290 (44%) Query: 2 SQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSE 61 + E P G +LR +T + +I + +L + D+A+ S Sbjct: 9 TIDEPAQPTPGPGGTIAHLRACLPTLTPSGRKIGQLILDDPREIVHLTVTDLADRTGTSV 68 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 A +V+ + LG GF +L+ L E+ L + ++P ++ K+ + T + E Sbjct: 69 ATVVRFCQDLGLKGFADLKIRLAGEAIPPERGLHEAVTHADSPATILEKILHSTESALSE 128 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 V+ RA A + L GAG S + D ++F +G+ +A DAH+ + Sbjct: 129 TTRTVDRAAFTRAVDALQCADRVLLIGAGTSAPLAQDAAYRFRTLGLLAEAPADAHVQHV 188 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 +A LL L ++H+G+T + A A+ GA I +T + SP+ +LAD + + + Sbjct: 189 AARLLPPASACLAISHTGQTRETLAGAAAARAAGATTIALTSFFRSPLTRLADVALVAGS 248 Query: 242 PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ET S+RI+ T+LDA FV+V ++A + T ++ Sbjct: 249 SETNYRVEAMSSRIIHATVLDALFVAVHLAQPDRAQKAQELTAEVLTEHR 298 >UniRef50_C3JIB3 RpiR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIB3_RHOER Length = 291 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 4/289 (1%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 D + P + L +R ++ E RI E + +L+ + D+AE + S A +V Sbjct: 3 LDRSAPASVDLLARIRASLSSLSPAELRIAEIIEADPSLASTLTVNDLAERASTSTATVV 62 Query: 66 KVSKLLGFSGFRNLRSALED---YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 + +K LGF G+ LR AL +++ L ++ ++ +V+ K+ + Sbjct: 63 RTAKRLGFEGYPQLRLALAAISGSGTENTIPLGVDIVAADSAGEVMAKLAEFESEQLKGT 122 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 + + + AR+ ++YG G S + D+ K RI V C+ + D M+S Sbjct: 123 AQLTDPAALEEVVSRIRSARRVEVYGIGASGIVAQDLTLKLSRIDVNCRVHLDRDAAMVS 182 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASLL D+ + ++HSG TSDV + LA++ GA IT S +A + +++ + Sbjct: 183 ASLLGPDDIAVGISHSGETSDVVEPLALARRTGASTAAITGGARSTLAVQSHHVLLTAGR 242 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 E ++R QL ++D F VA A +Q++ + Sbjct: 243 EFGFRSAAMASRTGQLLVVDTIFAMVAHSLP-SALSALQRSHDAIASKR 290 >UniRef50_C3RM33 Sugar isomerase n=2 Tax=Bacteria RepID=C3RM33_9MOLU Length = 312 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 7/284 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L M + + +E I ++LK G + +A+A S A I ++ + L + Sbjct: 1 MSLLRKLEMAVD-FSTSEKLIATYILKNGPDVLNMSTSQLAKATYTSPATITRLCQKLEY 59 Query: 74 SGFRNLRSALEDYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+ + + AL SE + + + + + +I + ++ Sbjct: 60 KGYNDFKIALSAQLQYTFDRNSETNPNFPFKKRDTIHTIKHSIATLAKDSINLTVNNIDN 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 D + + QA+ D+YG G I +D Q+K RIG Q P + + A+ + Sbjct: 120 DILAKIIIMLDQAKVIDIYGVSGPLRIASDFQYKMFRIGKNVQIAPMVNEQLFQAAQSNK 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 +++++SG T++V AA EL K+ +I IT S ++KL DY++ + E Sbjct: 180 DHCAILISYSGETNEVIAAAELLKRRKVPMIAITSFGESRLSKLCDYVLFLDSRERIYSK 239 Query: 249 -RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + I +LD + + + ++ +T I+D Sbjct: 240 VSTFGSTISIHIMLDIIYSCLFARHYDENLELKLETDHIIDHRH 283 >UniRef50_A4EAC5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC5_9ACTN Length = 283 Score = 261 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 126/259 (48%), Gaps = 4/259 (1%) Query: 28 TENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYF 87 + E ++ ++ + +++ +A+ S + I++ K LGF+G++ + L Sbjct: 17 SPAERNVIAYVSAHPHEVVGLSVRGLADVTFSSPSSILRFCKRLGFAGYKEFQRELIAEL 76 Query: 88 S---QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQR 144 + + V +++ D++ + +V KV +RTI ++ + R A +AR Sbjct: 77 ALLGDKKDVALEDISMDDSVERIVGKVMKSNVRTIEATARTLDYTVLERCAARLKRARAV 136 Query: 145 DLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDV 204 +L+G G S + D+ K +R+ C+ Y D H ++ A + EGD+ + ++SG T +V Sbjct: 137 NLFGIGASRLVAHDLAQKLMRVDKECRLYDDWHDQLLCAKNMHEGDMAIAFSYSGLTQEV 196 Query: 205 KAAVELAKKNGAKIICITH-SYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDA 263 A+++ ++ +T S +A +AD ++ A E + ++R+ QL ++DA Sbjct: 197 LDCTAEAQRHNCPVVAVTKVDGSSKLATMADAVLGVAASEPLVRSGAMASRMAQLMVVDA 256 Query: 264 FFVSVAQLNIEQANINMQK 282 + + + E+A +++ Sbjct: 257 LYAAYVASDYERATHVIKQ 275 >UniRef50_C2D3P4 RpiR family transcriptional regulator (Fragment) n=3 Tax=Lactobacillus RepID=C2D3P4_LACBR Length = 281 Score = 261 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 120/284 (42%), Gaps = 4/284 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + + + ++ +I ++++ + I+D+A S A + ++ K Sbjct: 1 MSSPVQML---KQSFDNLSRTNKKIAKYVIDNPQAASEANIEDLAAVTETSTASVSRLVK 57 Query: 70 LLGFSGFRNLRSALE-DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 LG+S FR +L + ++ ++ + +K+F + R + + + ++ Sbjct: 58 TLGYSNFREFTLSLAYTQLRPQNLPIFKDIDANDTLSTIADKIFTSSQRALQDTREGIDE 117 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 +E R+ R+ +G GGS+ D HKFLR + C YPD + +M A L E Sbjct: 118 NEFARSVLRIIHCRRLGFFGLGGSSVAALDGYHKFLRTSIDCFYYPDFDVQLMQAVKLGE 177 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 D +VV+HSG+ E K+ +I IT SP+ +D S + E+ Sbjct: 178 DDCAIVVSHSGKNRQTIKIAETLKRRKVPVIAITSYQDSPLVGHSDITFISSSDESNYRS 237 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + + QLT++D F+ ++ I++ Sbjct: 238 EGMYSLLAQLTIIDTLFMMATVRMGPATEDTIRSVQNIIESTRG 281 >UniRef50_UPI000197C448 transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C448 Length = 286 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 7/284 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L + + EN+ +I +++L+ + + +AE L VS++ IVK S+ +G Sbjct: 1 MTLLDIITYSLPRLAENQRKIAQFILENPENVLNLSSQQLAEILDVSQSAIVKFSQKVGV 60 Query: 74 SGFRNLRSALEDYFSQSE-------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 G+ L+ AL + + + L + +A D+ V K+ +I E ++ Sbjct: 61 KGYPALKLALSEIIGRQQLKDGAPHSALHNRIAPDDNLMVVAQKLAMEKNHSITETTKLI 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + + R Q+++ + G GGS D+ +K +IG+ D H+ + +A L Sbjct: 121 DFKQFERIVERIDQSQRVQIVGIGGSGLTAKDLSYKLQKIGITTLVESDHHVQIAAALTL 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 DV +V++ +GR D+ A +A+K GA +I IT SP+ +LADY++ S A E Sbjct: 181 NTHDVQIVISFTGRRKDMLTAANIARKQGACVIAITRDCDSPLGQLADYVLESIAEEDEW 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + S+R Q TL D F+++ Q +A + +++ Sbjct: 241 RSSSISSRTAQNTLTDLIFMALLQRREAKAKSLVMNARVVINKL 284 >UniRef50_C2C2H3 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=1 Tax=Listeria grayi DSM 20601 RepID=C2C2H3_LISGR Length = 282 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 119/279 (42%), Gaps = 2/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + + ++E ++ E +L+ + A +I +A+ S A IV+ K LG Sbjct: 5 SILNRIETLFKDLPKSEKKVAEMVLQDPAFASASSIHSLAKRADTSAAAIVRFCKSLGLK 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 F + + L S + DE+ + K+ +T+ + ++ +I Sbjct: 65 SFPDFKRQLYSELSSPVASGYYDFEEDESFDGISQKLLANYFQTLNDTAGQISEAKIRTV 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + +A YG G S + D+ K+LR G + D H++ M+ + + G V Sbjct: 125 SEQLEKADTIYTYGVGASWLVAQDIAQKWLRAGKQVVISQDEHVLAMAFAARKSG-VFFA 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 V++SG T+ V E AK+N +I +T S + AD+++ + APE S+ Sbjct: 184 VSNSGETTSVIELAEQAKQNNLTVIGLTRFGPSKLKAKADFLLETSRAPEAKFRSTATSS 243 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + Q ++D + + +Q ++++ D F Sbjct: 244 KQAQFFIIDVLYYHYVSRHYDQMIEQIRESRQATDRFRQ 282 >UniRef50_B7RYI4 Transcriptional regulator, RpiR family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYI4_9GAMM Length = 278 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 117/279 (41%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L +++ +I ++ A +A VSE + + LG+ Sbjct: 1 MTLLTDLADPLSKRSKSAHKIAACVVANPEAILASTTASLAAQAGVSEPTVNRFCTGLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF + + +L ++ + + ++ D++ V K+F T ++ Q +++ + Sbjct: 61 KGFPDFKLSLAAELARKQPRMTRDIDPDDSAAKVAAKIFESTQASLSNTQDHLDLAALQD 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AR L G G S ++ D QHK LR + A+ D + A+ L D+++ Sbjct: 121 VVAAMSNARSIALCGLGASASVALDAQHKLLRFPIPIMAHTDIINQRVVAAGLGADDLLI 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++++GRT+ + ELA G ++ IT HSP+A ++ + E ++ Sbjct: 181 CISYTGRTTAMIELAELAVSRGCQVAGITS-PHSPLANTCPLVLGVESGEDTDRYTPMTS 239 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 RI QL ++D +A E ++Q+ + Sbjct: 240 RIAQLVIIDILATCLALEQGEAFADHLQEVKRNLSQTRQ 278 >UniRef50_D0GPL3 Transcriptional regulator, RpiR family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPL3_9FUSO Length = 285 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 135/280 (48%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ +++ E I +++LK N S I D+AE + V + I +K LGF Sbjct: 5 NMKFTIKTIYNDLSKKEKLIADYILKNINKSTNLTIADLAENIGVVNSTIFSFTKKLGFK 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR R +L S + +++ +++ ++ KVFN ++++ + + I A Sbjct: 65 GFREFRDSLLRDQFNSNINVHEKISKNDSITSIIEKVFNSNIKSLEDTKKIAEKKSFSTA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + Q +G GGS+ I D HKFLR ++C+ D H+ +M ASLL + D + Sbjct: 125 LKILTQVDIVHFFGVGGSSVIAHDAYHKFLRSPLKCRFDSDFHLQLMQASLLTKNDCAFI 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG T + ++AK+ AKII +T S +AK AD S A E S+R Sbjct: 185 ISHSGMTKESIEIADIAKERKAKIIVLTSYPLSILAKKADITFISTAEEIEYRSEALSSR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 I QL++LD F+ V N + I++ K + Sbjct: 245 IAQLSILDTIFILVMLNNPTKTQISLNKIRTTIAKTKRKG 284 >UniRef50_A5EB66 Transcriptional regulator, RpiR family n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EB66_BRASB Length = 270 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 127/269 (47%) Query: 23 KQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSA 82 + +I E + +I +VAEA VSE IV + +G GF+ L+ Sbjct: 1 MLPELPPKARQIAELIAAQPEPFVHKSITEVAEACDVSEGTIVSFCRRVGVRGFQELKIM 60 Query: 83 LEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQAR 142 L + +++ +L + P V + +F ++ E + +++++ + A R +A+ Sbjct: 61 LARDLIEPVRLIQEDLHRGDDPATVTDHIFAAHAASLQETRRLLSMEALAEATRLLREAQ 120 Query: 143 QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTS 202 + ++YG G S I D+ ++ L++G+ A D+H+ +SA + G + V+HSG T Sbjct: 121 RIEIYGIGSSAPIAQDLSYRLLQLGLAANAIVDSHVQAVSAGMTGPGVATVTVSHSGSTV 180 Query: 203 DVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLD 262 + A LA+ GA+ I IT SP+A + ++ + A ET S+R+ QL ++D Sbjct: 181 ETVLATRLAQAAGARTIGITRLGKSPLAAHCEVLLYTVANETRYRPEAMSSRVAQLAIID 240 Query: 263 AFFVSVAQLNIEQANINMQKTGAIVDFFS 291 A + E++ +Q I+ Sbjct: 241 TLVSCCALTDTERSVGRLQHAARILSEKR 269 >UniRef50_C0D4M2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4M2_9CLOT Length = 282 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 134/273 (49%), Gaps = 1/273 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R K ++ ++ + +++L + + ++A A VSE +++ L ++ Sbjct: 5 IFSLIRTKYNTLSSSQKDVADYILTNPDKVMMNTLNEIAAACRVSETTVLRFLHKLNYNS 64 Query: 76 FRNLRSALEDYFSQ-SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 ++ R L S+ +++ + ++ F + ++++K+ + T+ +I + + I++ + Sbjct: 65 YQLFRINLTQELSKDNQETVYDDVGFQDTEDEIIDKIIHSTVSSITDSRQIIDPASVKAV 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR+ + G G S I D+ HK +++G+ D HIM + A+ L + ++++ Sbjct: 125 VEKIAGARRIVVAGVGASGFIAQDLYHKLIKLGLNAVCANDPHIMNILATGLDQNTILIL 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +HSG + +V +AK+ ++ +T S +A A Y++CS + ET ++R Sbjct: 185 FSHSGESREVLDMAAIAKERRCQVCAVTSYAKSTLANQAGYLLCSSSRETMFRSDAMTSR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 I+Q+ ++D +VS+ + + + V Sbjct: 245 IVQMVIIDILYVSLVIALGDGILPQIHSSRLAV 277 >UniRef50_C1I531 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I531_9CLOT Length = 284 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 138/273 (50%), Gaps = 5/273 (1%) Query: 24 QEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSAL 83 + +T+ E++I +++ + N S + ++A V EA + + + LGF F + + Sbjct: 9 RSELTKAENKICDYIEEYMNSSIYMTVTEIANNCGVGEATVTRFCRKLGFRSFLEFKMTM 68 Query: 84 EDYFSQSEQVLPSELAF-----DEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFF 138 F S + +++ + V K + I + ++ E ++ I + Sbjct: 69 AQEFKNSGYDNEDIIESEVVSENDSLGEFVKKFYEINVNSLEETLKKIDYSMIEEISDIL 128 Query: 139 YQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHS 198 +A++ G G S I D +KF++IG+ C Y D+H ++M ASL++EGDV+ ++++S Sbjct: 129 VKAKRISFTGVGHSGIIAEDAYYKFMKIGLICNCYRDSHTLVMMASLMKEGDVLFIISNS 188 Query: 199 GRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQL 258 G T ++ A E+A++N K+I IT + S +A+++DY++ E + + RI Q Sbjct: 189 GNTEEINIAAEIARENNVKVISITENLLSKLARVSDYVLNYTDQEIKIDMESFGIRISQN 248 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 L+D +V + N E A ++ KT ++ + Sbjct: 249 FLIDLICTNVIRKNKEIAVVSKSKTEKAIEKLN 281 >UniRef50_C2D9G3 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9G3_9ACTN Length = 285 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 135/278 (48%), Gaps = 1/278 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ E E I +++L+ + I ++A+ L V+++ I K ++ +G+ Sbjct: 5 SVTAKIKSLLPSCAEKEQAIAQFILQHVRETSYMTIHELADKLGVADSTIFKFAQKMGYK 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR+ R+ L E + + ++ + +F+ ++ ++ +++N D + RA Sbjct: 65 GFRDFRNDLLTEAYDPEVSVHEHITTRDSLATIAATIFHSSVTSLHNTLALLNEDNLKRA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A +G GGSN + AD HKFLR + CQ D HI +M ASLL DV ++ Sbjct: 125 LSLINNAHTLTFFGCGGSNIVAADAYHKFLRSPLHCQNAIDEHIQIMQASLLGAQDVAII 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++HSG + E+ ++N II IT ++PI + AD + S + ET + ++R Sbjct: 185 ISHSGLSRTTLQIAEILRENRVPIIFITSYLNTPITRFADVVFISASEETGYRSESLASR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQAN-INMQKTGAIVDFFS 291 + QL +LD F +V + ++ + + ++ Sbjct: 245 VAQLVILDTLFCAVMFKSDDKNVAQTLHNIRSAINRTK 282 >UniRef50_C2D9S0 RpiR family transcriptional regulator n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9S0_9ACTN Length = 282 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 131/273 (47%), Gaps = 4/273 (1%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 L L+ ++ ++ +E +I+ ++LK I ++A+ VS A I ++ + L Sbjct: 3 PKSLLVLLKENKDRVSTSEQQIITYILKKPEAIVGVTIHELAQMTFVSAATISRLLRKLS 62 Query: 73 FSGFRNLRSALEDYFSQSEQVLPS---ELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 G++ + L + + S ++ ++ + ++ K+ T+ +I + + N Sbjct: 63 LGGYKEFQQYLIYELASMKTSRQSSIEDINPKDSTKQIMFKIMRKTIESITLTEKLNNPK 122 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I A + AR ++G G S D+Q+KFLR + C D H+ +++A+ + +G Sbjct: 123 TIDSCAELIHNARHITIFGMGSSLLSAQDLQYKFLRANIDCTLSADWHMQLIAANNMSDG 182 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP-IAKLADYIICSPAPETPLLG 248 DV + ++SG T + V A+ +G K+I IT S +S + + AD ++ + E L Sbjct: 183 DVAIAFSYSGVTPETLRCVHAAQDHGGKVIAITRSVNSTELVRHADIVLYVASTEPLLRS 242 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQ 281 ++RI QL ++D F ++ + + ++ Sbjct: 243 SAGTSRITQLMIVDTLFSTLVNKHYDVYATAIE 275 >UniRef50_Q2SNY6 Transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNY6_HAHCH Length = 285 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 131/282 (46%), Gaps = 1/282 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + +LR ++ + ++E ++ E +L+ N I D+A VSE IV+ + Sbjct: 1 MGRPHDILSWLRQNRDTLRKSEQKVAECVLRNPNDVIHMRIVDLATEAGVSEPTIVRFCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 + F F++ + +L + ++ P ++ Q + K+F+ ++ + + + D Sbjct: 61 TICFDSFQSFKVSLAQQLASMQRQTPFRARSGDSLQQLGAKIFSDVQSSLQQVFNQLAWD 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I +A + + + +G G S A+ AD Q KF R+ A PD M+ A L++ Sbjct: 121 RIEQACAWISNSPRLYFFGYGASAAVAADAQQKFFRLKPSTHACPDPDTQMLIAGLVETN 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV++ ++HSGRT+++ + A+ +GAK++ I S +A +A+ I E Sbjct: 181 DVIIAISHSGRTNNLIQSCMQARASGAKVVAI-SPPQSALANIANLNIGVSVDENADAFT 239 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++R+ L +LD ++ Q EQ + + + Sbjct: 240 PLASRLAHLMILDTIASNLFQKLDEQHVQKLNQAKKNLSSLR 281 >UniRef50_D1PSB4 Transcriptional regulator n=3 Tax=Clostridiales RepID=D1PSB4_9FIRM Length = 282 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 131/276 (47%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N LR + +T + R+ ++L + + +I +A V+EA I + + L Sbjct: 2 NSCNFWELLRSRYSELTRSGRRVADYLTRHAEEAQYLSISSLAAECGVAEATIFRFCRSL 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF G+ ++ +L + +L + + L I +S++N + I Sbjct: 62 GFDGYNEMKISLAQANAIPTAAGADKLEPGADTATLCTHASAVALEAINGTRSVLNPEAI 121 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 AA +ARQ +G GGS + D+ +F + + + D+H+ ++ASL+ DV Sbjct: 122 DAAATLLQRARQVFCFGQGGSQILANDIWARFATVSTKFRTAGDSHMQTIAASLMVPEDV 181 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 VL +++SG T D+ + + K NGAK+I +TH +P LAD ++ A E+PL G + Sbjct: 182 VLFISYSGSTRDMMETLRIVKGNGAKVILLTHYADAPGTALADVVLLCGAKESPLDGGSI 241 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +A+I L + + + N E A I ++T + Sbjct: 242 AAKIAVLFVAEVLVLRFTLDNQELAAIARERTSKAL 277 >UniRef50_B9CM70 Transcriptional regulator, RpiR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM70_9ACTN Length = 283 Score = 256 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 134/278 (48%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R + +++ E ++ E+LL + + I +A+ L ++++ + K ++ LGF Sbjct: 5 TIRVRVRALESSLSDKERQLAEFLLADPHKASKMTISQIAQTLGMADSTVFKFTQKLGFE 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GFR+ R L E + + P+ + VF ++R++ + + + + +I A Sbjct: 65 GFRDFRGELAAEGFDPEVSIHEHITHKSTPKQMAETVFESSIRSLTDTKELFSEQDIIHA 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A+ Q YG GGS+ + AD HKFLR R D H+ +M AS D L+ Sbjct: 125 AKLIEDCYQLTFYGMGGSSVVAADAYHKFLRTPKRVAYDADFHLQLMRASRSNGDDCALL 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V+HSGR E ++ GA I IT + SP+ LAD + + A ET + ++R Sbjct: 185 VSHSGRCIQTIQIAEKLREVGASTIVITSNPSSPLTALADACLVTIAEETAYRSESLASR 244 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 I QL L+DA + V + A+ ++++ ++ Sbjct: 245 ISQLALVDALYTIVMFSDENAASRSLKEVREVISATRK 282 >UniRef50_A0Z4E2 Transcriptional regulator n=3 Tax=Bacteria RepID=A0Z4E2_9GAMM Length = 291 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 124/278 (44%), Gaps = 1/278 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + N + ++ G+++++++I +L + +I +A+ VSE + + K Sbjct: 1 MANDTNVLTQIQAALPGLSKSDTKIAHVVLADPEAATHASIALLAQQANVSEPSVNRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LG +G+ + + L + + + ++ K+ + T+ ++ + + + Sbjct: 61 RLGATGYPDFKIWLARSLVAGVRYISQVVDPEDTVTTYPGKLVDNTVNALLLAREQLPLK 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A A + +G G S A+ D +HKF R + D ++ M A+ +G Sbjct: 121 TLEVAVEHLDAAGRIYFFGMGTSAAVAQDAEHKFFRFQTPVTTHTDPLMLRMLAAGGSQG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++H+GRT + A LA +GA +I +T SP+A+++ +I APE Sbjct: 181 DVFVFISHTGRTEAIVDAAALASASGATVISLTA-QDSPLAQVSHCVIGLEAPENTEDYL 239 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++RI+ L ++D V E ++ + + Sbjct: 240 PMTSRIVHLVIIDILVTGVTLKRGEPCIEHLARIKESL 277 >UniRef50_Q9WYG1 Uncharacterized HTH-type transcriptional regulator TM_0326 n=7 Tax=Thermotogaceae RepID=Y326_THEMA Length = 280 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 3/280 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAV-SEAMIVKVSKLLG 72 + + ++ K + T E +I + +L +I D++E V SEA +VK K LG Sbjct: 1 MDVIQRIKEKYDEFTNAEKKIADTILSDPKGIIESSISDLSEKAGVKSEASVVKFYKKLG 60 Query: 73 FSGFRNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 + F+ + L S++ +++ +++ ++ + + K+F T+R I++ + +++D I Sbjct: 61 LNSFQQFKVLLAQSISRAPLEIVYEDVSSEDDTKTITEKIFKATVRAILDTLNWLDIDSI 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 R F A++ G S A+ D HKF RIG C D HI+ + D+ Sbjct: 121 ERTVDLFKNAQRIIFIGFAASAAVAFDAFHKFTRIGKNCLFSNDEHIIAAILATASPSDL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++H+G T V + AK+ ++ IT + S +AK +D ++ + ET + Sbjct: 181 LVAISHTGETISVVNFAKKAKEMKMPVVTITGNRKSTLAKYSDVVLATNTKETKIRTDAM 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++RI+QL +LD + +A + +A N+ K+ V Sbjct: 241 TSRIVQLVILDTIYTLLAARDP-RAIENLNKSRLAVSELK 279 >UniRef50_C9L6X6 Transcriptional regulator, RpiR family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6X6_RUMHA Length = 297 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 144/286 (50%), Gaps = 2/286 (0%) Query: 5 EFDSALPNGIGLAPYLRMKQE--GMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 E + + +G L K++ + E +I +LL + S + ++A+ + VS+A Sbjct: 8 EQNYMMKKEMGCRERLIDKRDGEHTKKTERKIAAYLLGNFDKSLHSTLLELADEIGVSDA 67 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 IV+ K +G++GF+ + ++ L+ D+ P ++ +K+F I + + Sbjct: 68 SIVRFCKSIGYTGFQEYKINAALQSVPEPRLYNPSLSVDDNPAEICDKIFAIESSALEQT 127 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 + +++ +++ A +AR+ +L G GGS D QHK L+IGVR + D + +MS Sbjct: 128 KQELDISVMNKVADVLLKARRINLVGTGGSAISARDFQHKLLKIGVRAELQEDKDLQLMS 187 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASLL E DV+ ++HSG V +ELA+K AKII +T + + + ADY + + Sbjct: 188 ASLLTEEDVLFAISHSGSNLHVAETIELAQKRNAKIITLTMKSKNILVEKADYPLYVVSE 247 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 +T + SAR+ QL +LD +A N + + M+ T Sbjct: 248 KTIFESESFSARLAQLAMLDCLVALMAFKNFDGSLEAMKATRIATS 293 >UniRef50_B7GUA9 Transcriptional regulator, RpiR family n=7 Tax=Bifidobacterium RepID=B7GUA9_BIFLI Length = 289 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 125/285 (43%), Gaps = 4/285 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + +G+ + + E + +++ + + +A+ VS+ +++ ++ Sbjct: 1 MQSSVGIRERIDHVYPSLRPAERAVAQYIRDHIEEAADLTVGQMADIAHVSQPTVIRFAR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPS----ELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 LGF G+R LR L ++ + +L + ++ +K + I E S Sbjct: 61 KLGFGGYRELRYVLRHPAAEHKVTFNPLDGFDLNPWDGEDEIPSKAADGAKALIDELHSA 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 ++ +A ++ D++G S D+ K +G+ C+ DA++ + A Sbjct: 121 LDPKAYRKAVALLAESEFIDIFGVENSLTPAMDLFTKLGYLGLTCRLNTDAYLQQIGAGH 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 L G V + +HSG ++D A+ LAK +GAK I IT++ +P+A AD + + Sbjct: 181 LTHGAVAVAFSHSGSSADTVKALRLAKSHGAKTIAITNAIGAPLASWADVTLLTGRDSHT 240 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + G + + L+D ++ V + + + + ++G ++ Sbjct: 241 IYGNAIFSCVADTALVDMLYMGVILSDYGRFSTALDESGRMIRDR 285 >UniRef50_B9DJX2 Putative RpiR family transcriptional regulator n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DJX2_STACT Length = 288 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 126/278 (45%), Gaps = 3/278 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L ++R + + +T+NE I ++LL+ + + + + S A +++ + LGF G Sbjct: 6 LIIHIREQMKHLTKNEQHIAQFLLEHPEKVLEMSAQTLGDVTKTSSATVIRCAHKLGFKG 65 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F +L+ +L Q E E+A DE+P+++ K+ + T+ + ++ + Sbjct: 66 FVDLKLSLSRNLPQHEAHNYKEIAQDESPREIKRKLLSRAAYTLETTEVLLEDQALEALV 125 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD--VVL 193 Y ++ ++G G S+ + D+ KF R G+ DAH++ + + D + + Sbjct: 126 DKLYDVQKIVVFGVGASHIVAEDIYQKFTRAGMEVIQSADAHVLATVLAGYHKKDNVLFI 185 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS-PAPETPLLGRNAS 252 V++SG + +A GA + IT S +A AD ++ + E L S Sbjct: 186 GVSNSGHNQETLRLAHVAHYYGATVAAITSRSDSKLAGEADIVLLHDASSEKSLRLAATS 245 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + I QL +D F + + + ++ +T V+ + Sbjct: 246 SLIAQLMTVDILFYTYLSKDYQAHVAHLSETKKAVEMY 283 >UniRef50_P26833 Uncharacterized HTH-type transcriptional regulator CPE0189 n=15 Tax=Clostridiales RepID=Y189_CLOPE Length = 279 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 70/276 (25%), Positives = 138/276 (50%), Gaps = 2/276 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ L + T++E ++E++ + +I +A+ V EA I + +K LGF Sbjct: 1 MGILEQLENPKFKATKSEKTLIEYIKSDLDNIIYKSISIIAKESGVGEATITRFTKKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQV--LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 +GF++ + L S + + + DE+ + NK+ ++ + + +++D + Sbjct: 61 NGFQDFKVTLAKEISNKKNTSIINLHVHRDESVTETANKMLKSSINILEQTVKQIDLDLM 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + A++ G G S D+ +KF+RIG D+H M++ +S+ + DV Sbjct: 121 CKCRDLIMNAKRVYFIGIGYSGIAATDINYKFMRIGFTTVPVTDSHTMVIMSSITNDDDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ +++SG T +V V+ AK+NG KII +T +P+ KL+DY + + ET + Sbjct: 181 IVAISNSGTTKEVIKTVKQAKENGTKIITLTEDSDNPLRKLSDYELTYTSAETIFETGSI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 S++I Q+ LLD + V + +A KT + + Sbjct: 241 SSKIPQIFLLDLLYTEVIKEMFSEAVEKKIKTTSAI 276 >UniRef50_D0XGH5 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XGH5_VIBHA Length = 296 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 114/278 (41%), Positives = 170/278 (61%), Gaps = 2/278 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAP-AIKDVAEALAVSEAMIVKVSKLLGFS 74 + P +RM+ +T E I E LK + +IK+VAE L VS A+IVKVSK LGFS Sbjct: 20 VIPNIRMRMPSLTRTEQSIAENFLK-PHFMQKSTSIKEVAERLGVSTALIVKVSKKLGFS 78 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF+ L+ AL + +L D++ + +V KV ++ + E + V+ + + A Sbjct: 79 GFKQLKDALNAHHHSDSYAPSEQLQPDDSCEQIVTKVLQNSINALTEILNFVDANMVSAA 138 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A AR +LY AGGSN IC D QHK LR G+R D H+M+MSAS+L E DVVLV Sbjct: 139 AEAIINARNIELYAAGGSNIICEDFQHKLLRFGIRASVPRDRHLMLMSASVLSEKDVVLV 198 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V+HSG+T D+ AV LAK++GA II IT+++H+ +++L+DY + +PA PLLG+N AR Sbjct: 199 VSHSGQTVDLMDAVRLAKQSGATIISITNNFHAELSQLSDYPLYAPASPEPLLGKNGIAR 258 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +++L ++D+ + ++A +QA N++KT V Sbjct: 259 LVKLAMIDSLYATIASKIPDQAEENLEKTTKAVAILHR 296 >UniRef50_A9BH25 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH25_PETMO Length = 283 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 139/276 (50%), Gaps = 3/276 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLK-PGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +L + T++E ++ E++L I ++A SEA I + K GF Sbjct: 3 KIQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGF 62 Query: 74 SGFRNLRSALEDYFSQS--EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F++ + L ++ E+ + +++PQ+++ KV +L++I SI++++ Sbjct: 63 ETFQDFKLTLALDNNEDIFEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDINNF 122 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +AA F A++ ++YG G S+A+ +Q+K R+G A D H+ +SA+ L GD+ Sbjct: 123 LQAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLNFGDL 182 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + ++ SG T D ++ +AKK+GA I +T +SPI K +D ++ + E P+ Sbjct: 183 AIGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTSAG 242 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + ++Q+ ++ + + E+A + T V Sbjct: 243 RSILVQIFAVEILSGLLYSIEYEKALTTGKDTARAV 278 >UniRef50_C2JLW7 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=22 Tax=Enterococcus faecalis RepID=C2JLW7_ENTFA Length = 290 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 122/279 (43%), Gaps = 1/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ + + + ++E +I E++LK + +++A+ S A I++ + + Sbjct: 12 NIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSMDVN 71 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF L+ L Q +Q + +E+ E+ D+ K+ + + + ++ A Sbjct: 72 GFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAVNEA 131 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + +YG G S+ + D+ KF R+G D H+ ++ V +V Sbjct: 132 VDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSVFIV 191 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET-PLLGRNASA 253 +++SG + +LAK+ G I+ IT S I + +D ++ + + E PL + Sbjct: 192 ISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDVPLRSAATVS 251 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + QL ++D F + A N ++ +Q + V+ Sbjct: 252 LVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLKE 290 >UniRef50_C0CU66 Putative uncharacterized protein n=2 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU66_9CLOT Length = 285 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 3/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 L +R + +T E ++ +++L+ I +++ + V + + + + + Sbjct: 4 TNLLISIRSCYDRLTRLEKKVADYVLQHPQEVVKMTINELSNSCGVGDTTVFRFCRSMNV 63 Query: 74 SGFRNLRSALEDYFSQSE---QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G+++ + AL + ++ LA ++ +V + + E S ++ D Sbjct: 64 GGYQDFKLALALSSNVNDMLDSKGEFNLAQSHDLHELAQQVSGVFTDAVNETLSSLDYDA 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 I R AR L+G G S +Q++ +RI D H+ + SA+ +QE Sbjct: 124 ISRTVEAILNARSVHLFGFGNSGVSALMMQNRMMRILPNIFYTSDVHMQLTSAATMQEDS 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V ++ +SG T D ++ + GA + IT +P A AD ++CS A E P+ G + Sbjct: 184 VAIIFCNSGITKDSIRIAQMTHEAGAFTVFITKFMQTPAAPYADVLLCSGATEGPIQGGS 243 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 S Q+ ++ + + + +A N K + Sbjct: 244 ISGVASQMYIVMLLYSELFRRMETRAQENKIKAAHAIAEKK 284 >UniRef50_C8NHI8 Probable transcriptional regulator YbbH n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NHI8_9LACT Length = 281 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 127/279 (45%), Gaps = 3/279 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ TE + I E++ + K++ + S A V+ SK +G+ Sbjct: 1 MSVLYKIKSSMSAFTETDRSIAEFVFVNRQVVLESNAKELGDMTKTSAAAWVRFSKKMGY 60 Query: 74 SGFRNLRSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G + AL +E + + L ++ ++ K N+ + I E S+++ + Sbjct: 61 KGLPAFKVALAKETQSYTNEDDIETFLNPQDSLMGLLQKTENMLTQNIRETFSLLDYHAL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A F ++A+ L G GGS+ +C D HK RI D H +M + L + DV Sbjct: 121 EKAIEFIHEAKTVFLLGVGGSSIVCLDFYHKMTRIHQNVMYDRDLHTLMPRIAQLDKNDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSY-HSPIAKLADYIICSPAPETPLLGRN 250 VLV++++G T V + ++AK GA+I+ +T S ++ L+D + P E + + Sbjct: 181 VLVISYNGETESVNSIAKVAKTMGARIVGVTKYNLKSTLSTLSDIRLFVPVEEKEIRLGS 240 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 ++R LT+ D + +A+ + + +T + Sbjct: 241 ITSRNSLLTITDLLYYGIAKTDFNVTKDLLVRTRQFIKE 279 >UniRef50_A8UBX8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBX8_9LACT Length = 285 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 132/279 (47%), Gaps = 1/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R K+ + ++E +I E +L+ + D+A S A +++ + +G Sbjct: 4 NVLLTIREKKITLPQSEKKIAETILRDPVKVIQMSATDLATEAGSSSAAVIRFCRSIGIK 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF L+ L + L +++ DE + V K+ T E ++++ +I R Sbjct: 64 GFTELKLQLSADSQGIKDNLYTDILADENLEQVKKKMLINTNHLFKETNNVLDTKQIERV 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + +++ LYG G S+ + +D+Q KF R+G D H+++ S ++ E V Sbjct: 124 SELLHESSIIYLYGLGASHIVASDIQQKFSRMGKIVVCSLDQHLLVTSMAVAGENAVFFG 183 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 V++SG +V A + +AK+ G K + +T++ + ++ AD + + A E PL + Sbjct: 184 VSNSGEKKEVLALMIMAKELGLKTVALTNNTENALSLEADIALKTAFAHEAPLRSGATIS 243 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + Q+ +D F A N + N++K+ A + ++ Sbjct: 244 LLTQMYAVDILFYDYASKNYDLTVTNLEKSKAAIQRYNQ 282 >UniRef50_A6T0F7 Transcriptional regulator, RpiR family n=2 Tax=Oxalobacteraceae RepID=A6T0F7_JANMA Length = 286 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 139/275 (50%), Gaps = 1/275 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L +R + + ++++E ++ +L+ L+ A I +A+ VSE +V+ + +GF G Sbjct: 2 LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDG 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++ + L + + ++ D+V+KV N ++ T+++ ++ ++ + I +A Sbjct: 62 WQAFKLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQAL 121 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + +A + YG G S I AD QHKF R GV AY D HI ++ASLL++GDVV+ + Sbjct: 122 QVLGRANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAI 181 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + G + + +V+LA+ +GA I+ + +P+A+LA +I SAR+ Sbjct: 182 SQRGSSLSLLRSVQLARSSGAAIVVL-APSGTPLAELATVLIPIDLHFHTDPYTPISARL 240 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 L ++D V +A + M + F Sbjct: 241 AHLVVIDILAVGLALRLSPERRKKMLNAQKALQKF 275 >UniRef50_D1AG49 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG49_SEBTE Length = 283 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 124/276 (44%), Gaps = 6/276 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L LR + T NE ++++ + + ++A+ S A I+++ K +G Sbjct: 1 MSLIIKLREAK-NFTPNEIGAAKYIISHSDEVIRLSCTELAKKTYTSPATIIRLCKKIGI 59 Query: 74 SGFRNLRSALEDYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G++ + L + E +E+ ++ D+++K+ ++++ ++ E + + + Sbjct: 60 GGYQEFKVILATEINFFIKNSMEINKNNEIDKKDSISDIIDKISSLSIDSLKETKILTDK 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + A DLYG+G S+ + D +KF+RIG Y + A E Sbjct: 120 NVVKSVIDMINNAEILDLYGSGASHFVALDANYKFMRIGKVTATYALYDQQYVQAKNSNE 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 ++ ++SG T+++ ++ +N AKII IT + + + K AD + A E Sbjct: 180 NHAAIIFSYSGETAEMIEIAKILTENKAKIITITKNSDNTLEKFADKSLYVTAKENLYRS 239 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 +RI L ++D + + L E+A + KT Sbjct: 240 AAIYSRISMLNVIDILYTAYFNLIYEKALEALGKTR 275 >UniRef50_Q03HR4 Transcriptional regulator, RpiR family n=2 Tax=Pediococcus RepID=Q03HR4_PEDPA Length = 270 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 127/274 (46%), Gaps = 10/274 (3%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + K ++ E +I +++ I +++ VS A + + K +G+ Sbjct: 1 MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F + L + S + + + D +V + + I +N +++ Sbjct: 61 PDFSQFKLGLAEATSNITENVDNAPLPD--------QVTDFYNQMITGTWKRINQKTLNQ 112 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A + ++G G S ++ + +R+G+ A D+H M +S+S++Q+ D+++ Sbjct: 113 VAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYISSSIMQKDDLLI 172 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++ SG++++V AV +AK++ K++ IT SP+A+++DY + E + ++ Sbjct: 173 VLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINS 232 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ + ++D + Q E Q+T A + Sbjct: 233 QLGVVYIIDILSTMLLQN--ETYKARYQQTVAAI 264 >UniRef50_A8UCF6 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF6_9LACT Length = 292 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 128/286 (44%), Gaps = 5/286 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L LR + + E I + +K G+ + ++A+ +SEA I K K +GF G Sbjct: 6 LEKLLRPYIKSFNDTEKIIADHFIKLGHDVVNKTLSNLADDTGLSEATIFKFVKKIGFDG 65 Query: 76 FRNLRSALEDYFSQSEQVLP-----SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 F N + ++ F E+ S+++ +++ + K+ + ++ + Sbjct: 66 FPNFKISVASNFQNIEERKNELTVFSDISKEDSSYAIAQKLVYSNKLALDNLIGSLDEER 125 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 I++A Y ++ +G G S+ I D HKFLR C D H+ + A+ L D Sbjct: 126 INQALNLIYDSQTIHFFGQGASSVIALDSYHKFLRTRFLCNYISDYHMQLSYATKLGPND 185 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V + +HSG T++ + + N II +T ++H+ + KL+ + E+ Sbjct: 186 CVFLFSHSGETNETIEVARILRNNQVNIIVLTGNHHTDLVKLSSISFVVDSEESAFQSET 245 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 ++RIL LT++D +V++ + + +++K + G K Sbjct: 246 LTSRILYLTIIDILYVALMYHDEAKNKDSLEKIRKALAVTKKGGTK 291 >UniRef50_Q03YQ8 Transcriptional regulator n=4 Tax=Leuconostocaceae RepID=Q03YQ8_LEUMM Length = 284 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 2/281 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR +++ E +++++++ + + I++++E VS A I + K +G Sbjct: 4 NIIAQLRAQRKQYNTTEQKLIDFIINHVSEAREANIQEMSELSGVSTATISRFVKKIGLE 63 Query: 75 GFRNLRSALEDYFSQSEQVLP--SELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 FR +L +Q + E+A + V KVF + S + ++ Sbjct: 64 SFREFSVSLASAATQMAASVDLFGEIADTDDTIAVAQKVFGGAENALAATVSNLTATQLD 123 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A AR+ +G GGS+ + + HKFLR + A+PD + +M A L D Sbjct: 124 EATLALISARRVGFFGIGGSSIVAFNAYHKFLRTPIDVIAHPDYDVQLMQAVKLNSNDTA 183 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +V++HSGR D + + KII +T SP+AKLAD ++ S A E + S Sbjct: 184 VVISHSGRNKDTLLIAKKLHEQHVKIIAVTSFKDSPLAKLADLVLLSLAEEVNFRSESMS 243 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + I QLT++D F V + + +++ Sbjct: 244 SLIAQLTIIDTLFTLVGSHLSQDTQSVVDTMRDVIEETRSH 284 >UniRef50_A6D304 DNA-binding transcriptional repressor RpiR n=1 Tax=Vibrio shilonii AK1 RepID=A6D304_9VIBR Length = 289 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 105/281 (37%), Positives = 169/281 (60%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + P +RM +T+ E I E L+P L + +I +VAE L+VS A+IVKVSK L Sbjct: 9 NSNQVIPNIRMMMPSLTKTEQSIAENFLQPHFLQKSTSINEVAERLSVSPALIVKVSKKL 68 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GFSGF+ L+ +L L D++ + +V+KV ++ + E + V+V + Sbjct: 69 GFSGFKQLKESLYAQSETQSYAPSERLLPDDSAEKIVSKVLQNSINALTEILNFVDVSMV 128 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 AA +AR +L+ GGS+ IC D QHK LRIG++ D H+M+MSAS++ + DV Sbjct: 129 DAAAEALLKARNIELFAVGGSSIICEDFQHKLLRIGIKSSVPKDRHLMLMSASIMTDQDV 188 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 VLVV+HSG+T D+ AV AK++GA +I IT++YH+ ++ L+D + +PA P+LG+N Sbjct: 189 VLVVSHSGQTVDLMDAVRQAKQSGATVISITNNYHAELSSLSDIPLYAPASPEPVLGKNG 248 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +AR+++L ++D+ + ++A A ++ KT V+ Sbjct: 249 TARLVKLAMIDSLYATMASKMPSLAEESLSKTIRAVERLHR 289 >UniRef50_Q9CKN4 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKN4_PASMU Length = 286 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 135/286 (47%), Gaps = 7/286 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G L+ ++ NE RI +++LK + + + K +A +AVS++ I+K S+ LG Sbjct: 1 MGFLIKLKHTYPSLSPNEQRIADFILKHPHEVKSSSSKALANQIAVSQSAIIKFSQKLGA 60 Query: 74 SGFRNLRSALEDYFSQSEQV------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 F + + A+ + + E L + + ++ K+F + + E S+ Sbjct: 61 DKFSDFKLAISEALIRQETQSEPRVHLHDSITDKDDLSEIAEKLFVEKQQALKESLSLNA 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 + + R QA++ L G G S + D +K +IG+ D H + + L Sbjct: 121 IPYVARVVEQLMQAKRIQLMGIGNSALVAKDFFYKLTKIGLPVVTETDTHASLAMSQSLT 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 D++ +++ SGR ++ A E AK KII +T +P+ +LADY++ S A E+ Sbjct: 181 PQDILFLISFSGRHREILLAAENAKARQIKIIALTALTTNPLHELADYLLYSVADESTFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + ++R Q + D F+ + Q E AN + ++ A++ + G Sbjct: 241 SSSIASRTAQHAITDLLFMGILQQ-KEHANDLILESRALIGQLNKG 285 >UniRef50_D2PUN7 Transcriptional regulator, RpiR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUN7_9ACTO Length = 294 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 5/261 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R +T E R+ E +L + I +AE S + + + LG +G Sbjct: 4 IETRIRGLVPTLTPAEQRVAEQVLADPLGTHRGTIGQLAERSRTSLTTVTRFCRALGMAG 63 Query: 76 FRNLRSALEDYFSQSEQV-----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 ++ LR AL ++ +++ D+ Q V+ + +R + E S +++ Sbjct: 64 YQELRFALATEAGEASSRDWTLGAAADIGPDDPMQSVLANLVATDVRALQETASQLDLAV 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + AR+ DLY GS A+ D+Q + ++G+ C + D H + SA+LL D Sbjct: 124 AEQLVDAITTARRVDLYAVSGSAAVTNDLQRRLHQLGITCHLWIDVHDALASATLLGPED 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V + ++HSG T +V + A+ GA +T+ S I +A ++ + A E + Sbjct: 184 VAIGISHSGETIEVIEPLTAARDAGAVTAAVTNFPRSAITSVAGLLLTTSAREATYRSGS 243 Query: 251 ASARILQLTLLDAFFVSVAQL 271 S R QL ++D VAQ Sbjct: 244 LSGRHTQLLVIDCLVTGVAQR 264 >UniRef50_Q03Q61 Transcriptional regulator n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q61_LACBA Length = 286 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 121/281 (43%), Gaps = 3/281 (1%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 +R + ++ E ++ + L + IK++A A VS A I + K + ++ + Sbjct: 6 IGKIRGTYDQLSRTEKKVAQMALNTPAVVSEMTIKELASATGVSTATISRFVKRMDYANY 65 Query: 77 RNLRSALED---YFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 R AL Q ELA ++ + NK F+ T+ ++ ++ ++ R Sbjct: 66 REFTMALAHLAIEDGGEHQSSFPELAEGDSLATIANKTFHYTISSLEATNEALSEKDLAR 125 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A + +G GGS+ D HKFLR + YPD I +M A+ L + D + Sbjct: 126 AVLKLINAEKVTFFGLGGSSIAALDGYHKFLRTALSVTYYPDFDIQLMQAARLSDQDCAV 185 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++HSGR S+ VE ++N II IT SP+A+ AD S E + Sbjct: 186 VISHSGRNSETLQVVEELQRNDVSIIAITSYSGSPLAQAADVTFLSLTDEVNYRSEGMYS 245 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 I QL +LD F+ + M K +++ + Sbjct: 246 LISQLAILDTLFMMTVLRVSSRTGNVMTKVHDVIEQTRHDS 286 >UniRef50_A4WDW6 Transcriptional regulator n=10 Tax=Enterobacteriaceae RepID=A4WDW6_ENT38 Length = 274 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 132/278 (47%), Gaps = 9/278 (3%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + L LR G + + ++ ++L + I ++A SEA + ++ + Sbjct: 1 MSENENLLLRLRQGVSGYSPTQQKLGSFVLNDPSRVLYLTITELARESDTSEASVTRLCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 LG G+ + AL + L + ++V + ++ + + +++ + Sbjct: 61 TLGCKGYTEFKMALALDVQRE----HVPLKKGDEIDEIVEE----SILALQDTSRLLDRE 112 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + +AA+ +Q+R +YG S I + +K LR+G Q + D H M+A+ L Sbjct: 113 ILLKAAQALHQSRSVYIYGVAASAIIGDYLHYKLLRLGKPAQLFSDMHRASMNATTLTSD 172 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+V+ ++ SG T D+ V+LA+K GA ++ ++++ SP+ L+D ++ + PE PL Sbjct: 173 DLVVAISSSGSTRDLLHVVKLARKRGAHVLALSNTPRSPLTSLSDMLLVAAKPEGPLSAG 232 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +A++ + L++ ++ L+ ++ Q+T + Sbjct: 233 ALNAKVGVMLLVELLATTMISLD-DRYGDASQQTASAT 269 >UniRef50_D0I0X8 Sialic acid utilization regulator RpiR family n=1 Tax=Vibrio cholerae CT 5369-93 RepID=D0I0X8_VIBCH Length = 282 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 127/277 (45%), Gaps = 3/277 (1%) Query: 11 PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKL 70 + L LR EG + + ++++ + + I ++A SEA ++++ + Sbjct: 4 KPQVNLLSRLRYGMEGYSPKLKTVADFIVSNADSAQYLTITELARDTMTSEATVIRLCRD 63 Query: 71 LGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 LGF G+ + R AL SQ + +++A ++ D ++ + ++ + +++ + Sbjct: 64 LGFKGYSDFRMALAIEISQPQFTKNNDVAKED--GDRIDDATQSAITSLQDTSILIDRKQ 121 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 I+R + +QA G G S+ + + + RIG + D HI M A D Sbjct: 122 INRICQMIHQADNIHCVGVGASSIVGRYLSFRLTRIGKSSTMFEDTHIAAMRAVKSTPSD 181 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 + ++ SG T DV AKK + ++ +T+ HSP++ +D ++ + PE PL G Sbjct: 182 LWFAISSSGSTKDVVYVATRAKKQQSPVVSLTNIRHSPLSVTSDEVMVAARPEGPLTGGA 241 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++++ L L+D + + E +++ T + Sbjct: 242 FASKVSALLLVDILINQLVAEHAE-YAESVKDTAEVT 277 >UniRef50_C1PED1 Transcriptional regulator, RpiR family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PED1_BACCO Length = 289 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 122/283 (43%), Gaps = 2/283 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + ++ K ++++E ++ E++L + ++A+ VS A +V+ + Sbjct: 1 MELDENIILQIKSKLTSLSKSEKKLGEYILSHAVETVNDNTSELAKKAGVSPATVVRFCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQS-EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 +G SGF L+ L S ++ + +++ +E + +K+ ++I + +++ Sbjct: 61 SIGLSGFSQLKIRLYADASGGLDREIYTDITPNEDITMIADKLALRFNQSITQTANLLET 120 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 I + ++ +YG G S+ D HKF RIG D H++ S + Sbjct: 121 SCIEKITAMVDKSPAIYVYGIGASHVAAEDFTHKFSRIGKPVVHTLDHHLLGSSLINASK 180 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET-PLL 247 + + +++SG T++ ++AK+NG + IT S +A + D + E L Sbjct: 181 DCMFVAISNSGETNEAIKLTQIAKQNGLFTVGITQKRDSTLASIVDAPLIHHGGEAVLLR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++ QL +D + + + + ++ + + F Sbjct: 241 SAATTSLAAQLFTIDVLYFAYVAKHYHEIMGRLKNSKINIQTF 283 >UniRef50_A0JVW9 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=A0JVW9_ARTS2 Length = 309 Score = 249 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 130/286 (45%), Gaps = 12/286 (4%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 G GL + + + + ++ E +LK + I ++A A V E+ + + K L Sbjct: 6 TGGGLLHRISGRLPYLPPSLRQVAEAVLKSPEQAQTMTISELAVAAGVGESTVSRFVKEL 65 Query: 72 GFSGFRNLRSALEDYF----------SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 G G++++ L + + +V+ + + ++ KV +++++ Sbjct: 66 GIDGYKSMLLGLAEATFISKAATSARTADSEVVYEGVNRGDTAAEIAGKVERSSVQSLRR 125 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMM 181 +V+ I RA + G S+ + +F R G +C Y D I +M Sbjct: 126 TGQRQDVEAIQRAVDLIDASNTVIFSCMGSSSIAAEEAVMRFTRAGKKCMLYRDTTIQVM 185 Query: 182 SASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA 241 A++++ GD+++ ++ SGR++ + A+ LA++ GA I IT + SP+ AD ++ + Sbjct: 186 LAAIIEPGDLLIGISDSGRSTPIIDAMHLARQRGAATIAITGAEGSPLRNYADVVLYTAT 245 Query: 242 --PETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 L G + +++ QL ++D + + A + + ++++T Sbjct: 246 VPSGGELYGESVTSKWGQLLVIDILYATYASRHYDATVEHLKQTYQ 291 >UniRef50_Q2J8J9 Transcriptional regulator, RpiR family n=1 Tax=Frankia sp. CcI3 RepID=Q2J8J9_FRASC Length = 293 Score = 249 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 4/287 (1%) Query: 5 EFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 E D+A P + +R ++ E R+ +L ++ ++A+ S A + Sbjct: 10 EGDAAAPA---VLERIRALSASLSSAEQRVARQVLADPVAMIHQSVSELAQVSGSSPATV 66 Query: 65 VKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 V+ + LG G++ L+ AL E+ L E++ + P ++ KV + E Sbjct: 67 VRFCQSLGLRGYQELKLALIRETLPVERQLVDEVSAADGPDEIAGKVLGGAASALTEAAR 126 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 ++ + A A + G S + D ++ +GV + DAH+ ++A Sbjct: 127 GIDGGVLAAIADLVVAAPRTLFVAVGTSAPLAMDAAYRLTTVGVDARFAGDAHVQHVTAR 186 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 +L GD+ + V+H+G T++ AA+ A GA IT SP+ +L + + + ET Sbjct: 187 MLAAGDLCVAVSHTGSTAETLAAMRAAVDAGAHTAAITSFARSPLTELVRHAVVVGSRET 246 Query: 245 PLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++RI+ L++LDA F V + ++ + T ++ Sbjct: 247 AYRIEAMTSRIVHLSVLDALFALVVVRSP-RSPGALAMTADVIVEHR 292 >UniRef50_C8SX74 Transcriptional regulator, RpiR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SX74_9RHIZ Length = 314 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 3/281 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ + E R+ + +L + + +A+ VSE + + + +G Sbjct: 27 DIISLVKDSYSELRRAERRVADVVLDDVKYAVDASNAALAQRAGVSEPTVTRFCRAIGCE 86 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDE-APQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 G R+ + L L A N VF R + E + ++ E+ + Sbjct: 87 GLRDFKLKLAQSLVVGALYLAKSPAPGSGNGMPFWNAVFGEARRALQEAERQLDPVELQK 146 Query: 134 AARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 AA +ARQ ++G G S+A+ + Q++ R G+ A D ++M M+AS L+ GD+V Sbjct: 147 AAELIAKARQVTVFGLGGSSSALAQETQYRLFRYGITVNAQCDPYLMRMTASTLKPGDLV 206 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + ++ +GRT +V AVELAK A I +T + +A+ D + PE P + + Sbjct: 207 IAISATGRTREVIEAVELAKHYRANAIGVTA-PDTELARACDVRLAVAVPEYPDTLKPTA 265 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 +R L ++D V+ A A +++ G Sbjct: 266 SRYAFLAMIDLLAVASAYKLDASARETVRRIKYNAQIHRTG 306 >UniRef50_D0KLH9 Transcriptional regulator, RpiR family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLH9_PECWW Length = 320 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 70/300 (23%), Positives = 137/300 (45%), Gaps = 6/300 (2%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 M+ E ++ N + Y+ G+++ I ++L+ ++ +K +A + VS Sbjct: 22 MATQESPMSI-NKEKVRTYIANILHGLSDTNQTIANYVLQNPSMVAQLPVKKLAVEIGVS 80 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQ---VLPSELAFDEAPQDVVNKVFNITLR 117 EA IV+ K +G++G L+SAL + ++ ++ DV K+ R Sbjct: 81 EATIVRFCKHIGYAGLLELKSALNRELFDDSDLSLPVTPDILMNDTRHDVAQKIALTVDR 140 Query: 118 TIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAH 177 + E ++++ I++ F AR+ G G S + + K RIG+ A+ D Sbjct: 141 AVKETIDLIDMQTINQIVSLFISARRVMFIGFGASGLAALEARDKMNRIGIDSDAFTDRF 200 Query: 178 IMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII 237 M + + L+ D+V+ +HSG T +V A +LA+K GA + ITHS HSP+ L +Y++ Sbjct: 201 SMTLKLANLKPDDLVVAFSHSGETPEVVNAFKLAEKAGATRLAITHSTHSPLTSLGNYVL 260 Query: 238 CSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV--DFFSPGAL 295 + G + R+ QL +++ + + N + + A++ + + Sbjct: 261 LTCGESERYQGDSIGTRVSQLFMIEFLCTELTKQNFKDFSSQSISIKALLIKERIKQHST 320 >UniRef50_A9NEV7 Transcriptional regulator, RpiR family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEV7_ACHLI Length = 281 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 143/283 (50%), Gaps = 6/283 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + +E ++ E ++++L++ L +++ +AEA S A +V++ K LG+ Sbjct: 1 MSVMLNMLKNKEALSMAERIVLDYLIENKTLLKDFSVEKIAEAAYTSPASVVRMCKKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDE----APQDVVNKVFNITLRTIMEGQSIVNVD 129 +GF++ + + S+ +P + + Q+ K +R + E ++ + Sbjct: 61 NGFKDFKIDFI--LANSKVEIPETSEYTDVILIKDQNNGKKAIENNIRALEETINLYDEK 118 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 +AA AR+ ++G G S +C D++ K RI C A ++H + AS + Sbjct: 119 TYTKAASLIMNARKILIFGKGSSFLVCKDLEMKLRRINKFCVAQGESHDQFVDASFINNK 178 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DVV+ +++SG+T ++ ++ LAK+N II IT S +A ++D ++ + A E+ Sbjct: 179 DVVIFISNSGKTKEIISSALLAKENKTPIISITRIGSSILADISDVVLYTSALESEFRSA 238 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++RI Q++++DA + A +I+++ ++ T + F Sbjct: 239 AMTSRISQMSVVDALYAKCAYTDIDRSIQALETTYRTIKKFKR 281 >UniRef50_Q03CI3 Transcriptional regulator n=10 Tax=Lactobacillaceae RepID=Q03CI3_LACC3 Length = 280 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 130/277 (46%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L++ + ++ E ++ +L + + I ++++ VS A I + +K LG++ Sbjct: 3 DFLVQLQIYKPNLSGQEKKLAAYLQAHPDHASQANISELSQLTGVSTATISRFAKALGYT 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 F+ LR AL + + L +EL+ ++ + K+F + + + ++ D + +A Sbjct: 63 NFQALRMALAQTSPEDDHALFAELSPKDSVDTLAQKIFTSNIDALRTTLANLDTDALTKA 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 ++ A L+G G SN + D HKFLR + D H+ +M+A+ L D +++ Sbjct: 123 VKWITHAEHLGLFGLGASNLVALDGYHKFLRTAIPVAYAADYHMQLMAATHLGPRDAMIL 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +HSG D A ELAKK +I IT S S + K+AD + A E+ A Sbjct: 183 TSHSGEDKDAIALAELAKKQQVPLIVITGSPTSRLVKMADAAFVAVAEESRYRTEALHAL 242 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 I +++++D F+ A Q ++ A +D Sbjct: 243 IAEISIMDTLFMISAIKTDSQTAPLFRQVRATIDATR 279 >UniRef50_C6JFM8 Transcriptional regulator n=2 Tax=Clostridiales RepID=C6JFM8_9FIRM Length = 285 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 118/277 (42%), Gaps = 4/277 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + +T++ ++ +++ + +I +AE VSEA I + + LG S Sbjct: 4 SILDSITEQYHSLTKSGKKLADYVFSHTTETQYLSITSLAENCKVSEATITRFCRGLGLS 63 Query: 75 GFRNLRSALEDYFSQSE----QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G+ + AL ++ ++ +++ + KV L ++ E ++ + +E Sbjct: 64 GYNAFKLALAQADRTTDLGDSSNSAEPVSSEDSISTICAKVHAANLLSLNESYALYDEEE 123 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + +A +R+ +G GGS + + +F D+H+ + ++ D Sbjct: 124 MSKAISILSSSRRIYCFGQGGSMIMAMEAWARFSTASPNFVHICDSHMQASAIAMADSKD 183 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 +L ++SG T D+ +++A +I ITH S A+ A ++ E+PL + Sbjct: 184 AILFFSYSGSTRDMCDTLQIASSRHVPVILITHFPKSAGAEFASVVLQCGYNESPLQSGS 243 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +A++ QL L+D F + + T + Sbjct: 244 VAAKVGQLFLIDCLFYGYCSQKPDTCSAARSATAHAI 280 >UniRef50_A9MIE1 HTH-type transcriptional regulator murR n=48 Tax=Enterobacteriaceae RepID=MURR_SALAR Length = 287 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 7/284 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R + TENE +I +LL + +++A+ L +S++ IVK ++ LG Sbjct: 1 MLYLAKMRNAEGEFTENEQKIATFLLAHVGELKTVSSRNMAKQLEISQSSIVKFAQKLGA 60 Query: 74 SGFRNLRSALEDYFSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 +GF LR AL + S S + L S + +++ + + K+ + + E +++ Sbjct: 61 NGFTELRMALIEEHSVSREKKRDKAVHLHSSITSEDSLEMMARKLNREKIVALEETYNLM 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + + + + +A + G GGS + D+ K ++IG R D H+ A L Sbjct: 121 DYERLEQVINLISKAPLIQITGVGGSALVGRDLSFKLMKIGFRVACEVDTHVQATIAQAL 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 ++GDV + +++SG ++ E A+K GA +I IT SP+ +LADY + + + ET Sbjct: 181 RQGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLADYTLDTVSGETEW 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + S R Q ++ D FV + QLN ++ ++++ ++ Sbjct: 241 RSSSMSTRTAQNSVTDLLFVGMVQLNDVESLRMIERSSELITLL 284 >UniRef50_Q6AH41 Transcriptional regulator, RpiR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AH41_LEIXX Length = 289 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 6/284 (2%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + +R ++ E+RI + +++ I ++A S+A I + + L +S Sbjct: 3 DVLSAVRQAVPRLSATEARIAQTVIEHPQRVVDLTIAELAAVCDASQASIARFCQALRYS 62 Query: 75 GFRNLRSALEDYFSQSE------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+R R A+ S+ + ++ SE+ ++ Q+VV K+ I ++ Sbjct: 63 GYREFRLAVAAATSREQATRERFELTESEIDPSDSLQEVVAKIAYQETLAIERTARELDA 122 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + A + DLYG G S D+Q K RIG+ D+H+ + SA+L + Sbjct: 123 EALDAVVAAIIAASRVDLYGIGSSILTAQDLQQKLSRIGLTAFCSVDSHLALSSAALQKP 182 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 G+V + +HSG T + A+ +A+ GA + IT+ S IA ++D ++ + A E Sbjct: 183 GNVAIAFSHSGETRETNHALAVARAAGATTVAITNVPESSIAAVSDLLLMTQARENFYRS 242 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++R QL L+D FV VAQ +Q +++ T V P Sbjct: 243 GAMASRTAQLALVDFLFVRVAQRLYDQMTDSLRLTYEAVRSQRP 286 >UniRef50_B0NYS8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NYS8_9CLOT Length = 282 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 114/268 (42%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + I + + + + + E ++ ++L+ + + ++ ++A S+A I++ K Sbjct: 1 MSSDILVRDQIFSTYDSLYDAEKKVADYLISHPSEAIEMSVSELASHCDASQATIIRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +G GF L+ L Q E+ + S + +N + + I N + Sbjct: 61 KIGCKGFHQLKIKLAGEQRQQEEQVISNEIDIDQMDKSLNNIMISKVEEIKATFHNFNPE 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ A + G + I D +KF ++G++ + + L++G Sbjct: 121 ELREIVDLIIHANLIEFAAMGDTIPIALDGSYKFNQLGLKAVSSTIWESQEAFSRTLRKG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV ++ SG + + VE+ K NG I IT+ SP+A+L D+++ + E + Sbjct: 181 DVFFAISASGASKRLVKMVEIVKDNGVTTIAITNQSKSPLAELCDHVLLTATREHIFHDQ 240 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQAN 277 + R+ ++++D F+ + + Sbjct: 241 VSFTRMAAMSVIDTLFLLLFSTKWDSFE 268 >UniRef50_B1QW74 Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1QW74_CLOBU Length = 281 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 140/279 (50%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + MTE+E +I +++L + + ++A S + +V+ S+ LGF Sbjct: 1 MNCSLLIKQIYDKMTESEKKIADYVLVNSSEVYKFSASELANITKTSSSSVVRFSRKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSE-LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 GF+ + L + + + + ++ ++V+ K N +++I + S+++ I Sbjct: 61 EGFQEFKIELAKDDINPVENIEYDYIDTEDNIREVIVKTANKNIQSINDTISLLDEHTIE 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A + A+ ++G G S I D+Q+K LRI ++H+ + ++ + D+ Sbjct: 121 EAIKAIKNAKNIYIFGIGESALIGLDLQYKLLRIHKNAMISLESHVQLSMSANISNDDIA 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +++ G+T +V +A+ K+ GAK I IT +P++ L D I P E L S Sbjct: 181 IGISYLGKTKEVYSALSKCKEKGAKCITITKFGENPVSSLGDIKIQVPFVEKDLRIGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +RI+QLT++D FV +A+ N +++T +++ Sbjct: 241 SRIVQLTVIDILFVGLAKENFSDVEKYLKETRNMIEELR 279 >UniRef50_C2H8J8 Bifunctional RpiR family transcriptional regulator/sugar isomerase n=16 Tax=Enterococcus RepID=C2H8J8_ENTFC Length = 286 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 2/282 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + E + E ++ +++ ++AEA +S +V+ SK Sbjct: 1 MEELMSVISRIESMMEDYSSAEKKLANYIIGNIEKVPTMTANELAEASGLSAPTVVRFSK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +GF + + + S++ +E+ + NK+ N I E I+ + Sbjct: 61 KIGFQSLTDFKITISTELQTGIDEGFSDIEANESFYSIKNKLGNNAQVAIKETVDILEEE 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I + A LYG G S+ + D+ K+ R+G D H+++ ++ Sbjct: 121 TIQKVVECLETAESVFLYGVGASSLVVEDILQKWSRVGKPIIFEKDIHVLLPQLVSNEKK 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP-ETPLLG 248 V+ +V++SGR++DV A ELAK +II +T ++P++K+AD ++ + P E Sbjct: 181 KVLWLVSNSGRSTDVVALAELAKNMNIEIIALTQFGNNPLSKIADVLVQTSRPKEITNRS 240 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 ++ + Q +D F N E + ++KT + + Sbjct: 241 AATNSLLAQFATIDIIFYFYMAKN-ESLSEKVKKTREAIQDY 281 >UniRef50_C7REF2 Transcriptional regulator, RpiR family n=2 Tax=Anaerococcus RepID=C7REF2_ANAPD Length = 279 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 129/279 (46%), Gaps = 1/279 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ + E T ++++I +++L + +A+ S++ I++ + +G+ Sbjct: 1 MTYTIKIKERSEDFTPSDTKIAKYILDKPGEVIKINSQKLADLTGTSQSAIIRFVQKIGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSE-LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G+ +L+ + E L SE ++ D+ D++ K + +I + ++++ D+I Sbjct: 61 KGYTSLKLDIAKSLENDEINLKSEVISADDKVGDIIEKSKINVISSIEKTYALIDEDQIS 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A A L G G S +C D +K R G + DAH + + ++E D++ Sbjct: 121 KAIDNIVYANFVYLAGIGSSGLVCEDFLYKLQRSGKKAFYETDAHTNLSLLTNIKEDDLL 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + +T++ + +V A E AK GAK+I IT + +A ++D +I P E + S Sbjct: 181 ICITYTALSKEVLIAAEYAKTIGAKLISITKAGRGKLANMSDILIPIPEIEKKMRYGAIS 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +R + D F N+++ N+ + + D Sbjct: 241 SRFASQIITDILFYGYISKNMDEVVKNLMVSKELTDKLK 279 >UniRef50_C0C246 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C246_9CLOT Length = 292 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 1/281 (0%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 + NG + R +T E R+ E++L ++K +A EA IV++ Sbjct: 3 MIENGRNILATTRFLLPSLTAAEKRVAEFVLASPKEVTRMSLKKLAVRCECGEATIVRLC 62 Query: 69 KLLGFSGFRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 K +G SG+ L+S LE + + L+ + ++V +VF + + + + Sbjct: 63 KTIGVSGYAELKSLLETQLQLPAVKEESVRLSTGQGMGEIVARVFELNILNLRRTLEVAA 122 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 V+E A A + + G + C+ +F RIG C A DA + +++A ++ Sbjct: 123 VEEYENACEVLSTANKICFFAIGDAMFPCSYASLRFRRIGYDCYADSDADVQIVNACNMK 182 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 EGDV + ++HSGRT V A+ +AK GA ICIT + S + K +D ++ + +T + Sbjct: 183 EGDVAIAISHSGRTKQVVEAMRIAKSRGAVTICITKAGKSELTKYSDIVLYNVTTDTTVD 242 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 + R+ + +LDA ++ V Q + +Q+ + Sbjct: 243 KEIIARRVAEQAMLDAVYMGVLQKMEANSFARLQEVSENLK 283 >UniRef50_B5HLI6 RpiR-family transcriptional regulator n=3 Tax=Streptomyces RepID=B5HLI6_9ACTO Length = 317 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 141/282 (50%), Gaps = 5/282 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 LA +R MT + R+ E + A + +AE SEA +V+ ++LLG+ G Sbjct: 35 LAAKVRTLGPSMTRSMHRVAEAVAADPAGCAALTVTGLAERTGTSEATVVRTARLLGYPG 94 Query: 76 FRNLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 +R+LR AL +Q + + +++A D+ DVV K+ +T+ + + ++ ++ Sbjct: 95 YRDLRLALAGLAAQQQSGRAPAITTDIAVDDPIADVVAKLAYDEQQTLADTAAGLDTAQL 154 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A AR+ D+YG G S + D+ K LRIG+ QA+ D H+ + +A L+ GDV Sbjct: 155 GAAVAATASARRIDVYGVGASGLVAQDLTQKLLRIGLIAQAHSDPHLAVTNAVQLRSGDV 214 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA-PETPLLGRN 250 + +THSG T DV + +A ++GA + IT + + AD+++ + E+ L Sbjct: 215 AIAITHSGATGDVIEPLRVAFEHGATTVAITGRPDGAVTQYADHVLTTSTARESELRPAA 274 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 S+R QL ++D FV VAQ E A + + + Sbjct: 275 MSSRTSQLLVVDCLFVGVAQRTYETAAPALAASYEALAHRHR 316 >UniRef50_C0X1P6 Transcriptional regulator RpiR n=21 Tax=Enterococcus RepID=C0X1P6_ENTFA Length = 285 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 132/278 (47%), Gaps = 8/278 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + +T++E ++ +++L G + D+ V +A I++ + LGF Sbjct: 14 MNYIYLINEHYPLLTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGF 73 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SGF +L+ + ++ PS + + +V + + ++N +++ + Sbjct: 74 SGFSDLKIEIAKEDFSKKKEQPSSGKYHD-------EVAKSLIEVLQSTSCLINEEKLTK 126 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A + QA ++G G S D++ FLR+G++ +A D H ASLL + D+V+ Sbjct: 127 AIQLINQASSLYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVI 186 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 + + SG+T D ++++AK NGAKI+ IT+ HSPI K AD ++ + E L G + + Sbjct: 187 IFSLSGKTKDTYDSLKIAKNNGAKILAITNYIHSPIGKSADLVLQTAIEE-FLNGGSLAG 245 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +I QL + D Q N + +K + Sbjct: 246 KISQLYICDLLVHEYEQNNKINSLDLREKVLRSIIDKR 283 >UniRef50_C1IBM1 Phosphosugar-binding transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBM1_9CLOT Length = 266 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 127/275 (46%), Gaps = 10/275 (3%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ K ++ E I +++++ G+ I D+A+ + S A I + +K +G Sbjct: 1 MDILCEVQRKYNEFSDKEKDIADYIMQHGDKIKNINITDLAKEIGTSGATITRFAKKIGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +++ L + + ++ + + + I + +++ +EI + Sbjct: 61 DSFVDMKIKL------GSNKVELPINDEDG---IFSYTYQYYNEVIERTKMLIDKEEIFK 111 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 +A+ +YG G S C ++ + LR+G D+H+M++++S++ E D+V+ Sbjct: 112 VVNEIKKAKNIYIYGVGSSGLTCKEMMQRLLRMGFNVHCISDSHMMIINSSIVSENDLVI 171 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T +V ++ +K+NGAKI+ IT S ++K +D P R + Sbjct: 172 GISISGETQEVIHSLRKSKENGAKIVSITGFEGSTVSKYSDIKFIVYNPNFVDRSRFINT 231 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 + + LLD V +I +N AI++ Sbjct: 232 QFSAMYLLD-LISMVLLKDINLSNKMQTTINAIIN 265 >UniRef50_C6J2D0 Transcription regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2D0_9BACL Length = 284 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 134/279 (48%), Gaps = 1/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + E + E+E + +++L +I VA+ S A I ++ + LG S Sbjct: 5 SVLTQMEAMLEQLPESERKAAQYILTASAEVSGLSIHAVADKAGTSAAAITRLCRSLGLS 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ L ++ ++ ++ E Q+V+ K + +L+ I + + + I + Sbjct: 65 GFPDLKMRLSVDNAKPQRPGYYDIERGETIQNVIQKTVSNSLQAIQDMMLHLQPELIEQV 124 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 F +A +YG G S + AD K+LR+G + A D H++ + + G + + Sbjct: 125 VDSFREASVIHMYGVGASAIVAADAAQKWLRLGKQAFALQDEHLIAAALASAPPGALFMG 184 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 +++SG T +V +A+K G + I ++ + +A+LAD ++ +P APE L +S+ Sbjct: 185 ISYSGNTKEVLQLFRVAQKYGVRTIGLSRFGNHKVAELADLMLYTPQAPEATLRSGASSS 244 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 R+ QL ++D F + A E+ + + +T F Sbjct: 245 RLAQLVMIDILFFAYASTQYEETILRLSQTHEATAFLKQ 283 >UniRef50_B9NXN7 Bifunctional protein glk n=2 Tax=Rhodobacteraceae RepID=B9NXN7_9RHOB Length = 320 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 129/283 (45%), Gaps = 3/283 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 + L P L Q + E ++ +++ N + I ++AE +VS+ +V+ + L Sbjct: 30 GAVDLIPALHNSQTKLAVQEQKVADYVKDHLNEISSMTIGNLAERCSVSKPTVVRFCRSL 89 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSEL-AFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G GFR+ + L + S Q L +++V T+ + ++ + Sbjct: 90 GCEGFRDFKLRLAQNVAVSAQYLYRNAGDESSDANSAIDQVLGALFATLDVMRGQIDTER 149 Query: 131 IHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 + A RQ G GGS+ + + ++F R+G+ D++++ M A+ L Sbjct: 150 LEEARDACLDRRQILFAGIGGGSSLVAQEASNRFFRLGIPSFFVNDSYVLQMRAAALGLE 209 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV+ +V+ SG + +A E+A GA I IT ++ ++ ++ + + PE + + Sbjct: 210 DVLFLVSASGEADAIVSAAEVANGYGATTISITK-PNTRLSDISKIALLTELPEDSDIYK 268 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++R L ++DA ++VAQ ++ N+++ A + + Sbjct: 269 PTASRYAHLAIVDALAMTVAQEMTDETKENLRRIRASLTAYHG 311 >UniRef50_C5C1Y9 Transcriptional regulator, RpiR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1Y9_BEUC1 Length = 307 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 5/290 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 G+ LR + ++ R E +L S A I D+AEA S + + ++ + L Sbjct: 13 RSGGILAELRRLLPDLPDSVRRTAERVLADPVASVAGTITDLAEASGTSPSAVSRLCRRL 72 Query: 72 GFSGFRNLRSALEDYFSQSEQV-----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 G G+ LR A+ + S + + ++ +DV + T R + + + + Sbjct: 73 GVDGYPALRIAVVADATASASSPWEIDISRTIGPTDSLEDVAGTLGAATSRAVHDTLAGL 132 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 ++D + A AR+ LYG GS + A++Q + RIG+ ++ D H + A+LL Sbjct: 133 DLDVLRDVAHAVAGARRVHLYGVSGSAVMTAELQLRLHRIGIATWSFADVHEGLTGAALL 192 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 GDV + V+++G T + + A A + +T + S +A +AD I+ + ET Sbjct: 193 GPGDVAIAVSYTGETIETLEMLRAAGSRDALTVAVTGAPRSSLAAVADRILVTVTEETTF 252 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 +AR +LT+++ +++V QL E+ + +T V G + Sbjct: 253 REGPLAARFSELTVVELLYLAVGQLTYERTTELLTQTALAVRRHQAGRTE 302 >UniRef50_Q03CT7 Transcriptional regulator n=7 Tax=Lactobacillus RepID=Q03CT7_LACC3 Length = 289 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 119/282 (42%), Gaps = 3/282 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + + ++E E +IV++++ ++ D+A+A S A + + ++ L F Sbjct: 1 MSVKGNYQSTRSELSETEKKIVDYVMAHSQAVLTMSVHDLAKAAGTSPASVSRAARRLQF 60 Query: 74 SGFRNLRSALEDYFS-QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 SG+ L+ L + Q E+ + + K+ +++ E +N + Sbjct: 61 SGYNELKMQLAADLKGDTNQSDDQEIQKNATLTTIKQKLLIDANQSLRETVDQINEANVD 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ-EGDV 191 +Q+ + ++G G S ++ K+ R+G C D ++ + A+ E + Sbjct: 121 TIINLIHQSDRLLVFGVGASYLAAQNIAQKWGRLGYPCHFSDDLNLFLPLAATADVEQTL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP-ETPLLGRN 250 +++SG + +V A +LAKK G ++I T + + K AD I + P E Sbjct: 181 CWFISNSGESPEVVLAAKLAKKAGLQVIVTTKLGKNSLTKYADVSIQTSQPMEARNRFAA 240 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + Q L+D + + + A I ++ A V + Sbjct: 241 TQSLHTQFMLIDILYYAYVSRYYDAAKIATDQSKAAVTAYRE 282 >UniRef50_D0DKU0 Transcriptional regulator n=1 Tax=Lactobacillus crispatus MV-3A-US RepID=D0DKU0_9LACO Length = 284 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 122/281 (43%), Gaps = 2/281 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + + ++ I + +L+ + K++ S A +++ K L + Sbjct: 1 MNVRDRILENYTELKKSSRIIADAVLENPKILLNKNAKEIGNYTNTSAASVIRFCKQLNY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSE--LAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G ++ + L + Q+ P + + D+ +V+ K+ + + +++ ++ Sbjct: 61 KGLKDFQIDLAQSTVKQSQLKPIDMIVTKDDKADEVMTKLRVSLSQNFEDLSKTIDIKDL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A ++R + G G S+ D+ +K +R G D HI + DV Sbjct: 121 QKAVSLIKKSRAVYIAGIGASSFSAKDLFYKLIRSGKTVFYNDDVHIALERIYYSTPKDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++SG T ++ AV+ AKKN I+ +T SP++KLAD + P E+ + Sbjct: 181 MICFSYSGLTQELLLAVKQAKKNKTPIVAVTRKSESPLSKLADINLKLPDHESLMRVGAI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++ Q+ + + ++ ++ + M+ TG +++ Sbjct: 241 NSTFAQMFISNVLYLCSISSDLGEVKQEMEATGKLLEKLKE 281 >UniRef50_B7LQI9 Transcriptional regulator n=32 Tax=Gammaproteobacteria RepID=B7LQI9_ESCF3 Length = 301 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 134/291 (46%), Gaps = 7/291 (2%) Query: 7 DSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVK 66 D+ + I + + + +T E RI +++L + I ++A S+A + + Sbjct: 12 DTPMAYSIDIISCITERFMALTATEKRIAQFILDDVPAAVELPIAELARLTQTSQASVTR 71 Query: 67 VSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 ++ LG R L+ L + ++ + D D V ++ + + + + Sbjct: 72 FARALGCKDVRELKVKLAQSLAIGQRFI-----LDVPDLDGVQGIYESIISVLETHRRSL 126 Query: 127 NVDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 +++ I +A + QARQ G GGS ++Q++ R+G+ + DA +M M S Sbjct: 127 DMNAISQAVSWLSQARQILALGTGGGSTICSQEIQYRLFRLGLPVVSQNDALMMRMMCSA 186 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 + DVV+V++ G T ++ + +A++ GA++I IT +P+A+ D ++ E+ Sbjct: 187 VMPQDVVIVLSLGGYTPEIIESAAIARQYGARVIAIT-PAQTPLAEQVDLVLPLLVQESD 245 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 + + +R L ++D +A N QA +++ ++D GA + Sbjct: 246 YIFKPTPSRYAMLAMVDVLATELAMANKAQAKDRLRRIKLVLDSHRGGANR 296 >UniRef50_A2RL41 Transcriptional regulator, RpiR family n=4 Tax=Lactococcus lactis RepID=A2RL41_LACLM Length = 283 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 122/280 (43%), Gaps = 3/280 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R T E +I +++ + G + ++VA + S A +V+ S+ LG+ Sbjct: 1 MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGY 60 Query: 74 SGFRNLRSALEDYFS--QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF L+ L ++ + ++ E+ E P + NK+ + + ++ DEI Sbjct: 61 DGFSQLKQKLSASYAVHEDDEDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEI 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A +A ++G G S+ + D+ KF RIG + DAH+ + S S+ + Sbjct: 121 MAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHLFVSSLSISDRKTI 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET-PLLGRN 250 + ++ G T +V + + II IT S + +++DYI+ S + E + Sbjct: 181 FIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA 240 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + + QL ++D F + ++ ++KT + Sbjct: 241 TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIKLL 280 >UniRef50_C0R285 Transcriptional regulator n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R285_BRAHW Length = 285 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 122/280 (43%), Gaps = 2/280 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R K E ++ +I ++L D+++ VS A +V+ +K LGF Sbjct: 1 MNAYLIIRDKYEDFSKAYKKISNYILSNPKEVIKLTALDISKNCGVSSASVVRFAKDLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQ--VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G L+ ++ + + + ++ D+ +++ NK+ + + + ++ + + Sbjct: 61 KGLDELKISIASKNGDDDNKYNINTIISADDNVEELCNKIMLLIKSSNEDFFYQLDKEAL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 +A + AR + G G S+ D+ HK R Y DAH+ + L E DV Sbjct: 121 EKAFKLIRNARNIYMLGIGASSLSAYDLFHKLKRANFNAFFYEDAHLNAEFFNYLTEEDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V+ ++SGRT++V V++A A II +T + ++K+AD +I P E Sbjct: 181 VIAFSYSGRTNEVIYPVKIASSKKASIIAVTRKKTNNLSKMADVLITVPNNEELTRMGAI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +++ L + D + Q + E N+ T + Sbjct: 241 TSKYSSLIVSDLLYFGAIQKDFENIKENLINTSILTRELK 280 >UniRef50_C6VNS3 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNS3_LACPJ Length = 292 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 118/278 (42%), Gaps = 2/278 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R ++ + +I ++++ + A +I D+A A+ VS A + + K + FS Sbjct: 12 VLTLIRSYYPNLSVTDRKIADYIIADPIKTAAQSISDLAAAVGVSTATVSRFVKRISFSS 71 Query: 76 FRNLRSAL--EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 FR+ L + Q+ ++ + + FN ++ + ++ ++ R Sbjct: 72 FRDFSRELTAAEPIEQTNAEAFQDVEKQTTFKGIAESTFNSIRSSLDQTSQVMTEADLKR 131 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A AR YG GGS D HKF+R G+ C D + +M A+ + DV + Sbjct: 132 AVELLLNARSIGFYGLGGSAVAALDGYHKFVRTGIPCAHNSDYDMQLMQAAQMNASDVAV 191 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++H+GR + +I +T +SP+AK + S A E ++ Sbjct: 192 VISHTGRNQQTLQVLATLTSQSVPVIALTSFGNSPLAKDSTVAFISVAEEINYRSEGLTS 251 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 I Q++++D+ F+ A + ++ + + Sbjct: 252 LIAQMSIIDSLFLMTAVHGNIEMAESLGRVREAISQTR 289 >UniRef50_Q1WQV4 Transcriptional regulator, RpiR family n=4 Tax=Lactobacillus RepID=Q1WQV4_LACS1 Length = 274 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 56/278 (20%), Positives = 119/278 (42%), Gaps = 7/278 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L + ++ E ++ +L+ + I +A+ VS A I + + + Sbjct: 1 MNLLNNIEAIFSTLSRQERKVALKVLQNPQEVQSMNITKLAKKAGVSNATITRFVRRMEC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 S F + + L + S E+ + +KV+ + + ++ D IH Sbjct: 61 SDFHDFKLKLAISAASS-----PEVPVSSESDSMGDKVYEFYQKVLQGTWKQLDTDTIHN 115 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 +AR+ +YG G S + + +R+G+ D+H+M + ++++ DV++ Sbjct: 116 IVHAITKARRVYVYGLGSSGYTAQEFTQRLIRMGIAAFCTVDSHMMFIDSTIVNSDDVII 175 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T DV A LAK+ G KII IT Y SP+ +L+ + R ++ Sbjct: 176 AISQSGNTDDVNVACSLAKQKGTKIISITGFYQSPLIELSTWSAVVKNSNFVDNTRFINS 235 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++ + ++D + + + + + M KT ++ Sbjct: 236 QLAIVYVIDIITMELMEK--SEYSSTMNKTVELIMDRK 271 >UniRef50_B7UNF1 Predicted transcriptional regulator, RpiR family n=11 Tax=Escherichia RepID=B7UNF1_ECO27 Length = 281 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 116/271 (42%), Gaps = 1/271 (0%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N I + ++ + + E ++ +++L + ++ +++E SEA IV+ K L Sbjct: 2 NNITVKSLIQSNYPTLHQAEKKVADYILSHAHEVVNYSVTELSEKSHASEATIVRTCKKL 61 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+ G+ +L+ AL + P F + + + +++ N + + Sbjct: 62 GYQGYYHLKIALAKEVINPDNSYPDNTDFTD-ITSLATFLLKKQAEDLIQSTQFFNAEVL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 + + AG SN + +KF ++G++ + + + +A + + D+ Sbjct: 121 ESILKLLANCDTIFFFAAGNSNPLAVYGAYKFSQLGLKTVVHVSPEMQINAAYSMGKRDL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + +++SG T+ + ++ K+ GAK +CIT+ SP++KL+ + + + + Sbjct: 181 AIGISNSGSTNLMVDIFKVVKERGAKSVCITNYIKSPLSKLSTHQLNTAVSDKIFFEAFD 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQK 282 S R+ + ++D + N + Sbjct: 241 STRVPAMGVIDMLVLLFMYKNKAHYEKYRTR 271 >UniRef50_C8JWL0 Phosphosugar-binding transcriptional regulator n=3 Tax=Listeria monocytogenes RepID=C8JWL0_LISMO Length = 273 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 57/274 (20%), Positives = 134/274 (48%), Gaps = 6/274 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L + ++++E ++ + +L + +I D+A V E+ IV+ S+ +G Sbjct: 1 MDLLATISSYFPSLSKSEQKVAQLILSNPDEVENLSINDLALMANVGESTIVRFSRKIGL 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +GF++L+ AL Y + +Q + E + V+ + + + +S + +++ + Sbjct: 61 TGFQDLKIALVKYQTSQKQNITDESNEAKDL------VYRQFVDGLQDTKSFIEQEKLEQ 114 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AA+ ++A + G S I + ++ R+G + PD H+ + +++++ D+V+ Sbjct: 115 AAKMIHRAEHVYILSVGTSAFIAMQLSNRLKRLGKFVEFVPDGHLQSIYVTMVKKTDIVI 174 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T +V +ELA ++GA ++ +++ +S I+++ D + + + E + SA Sbjct: 175 GISKSGNTKEVIQNIELASQSGAPVVTLSNFINSKISQMGDVSLVASSKEFLSDAGSFSA 234 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + QL LLD + +N + T + Sbjct: 235 EVSQLYLLDTLIKVLVDINPSSYHNIRSLTNKAL 268 >UniRef50_D0R5V5 Transcriptional regulator n=10 Tax=Lactobacillus RepID=D0R5V5_LACJF Length = 272 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 131/274 (47%), Gaps = 7/274 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ +T++E+++ ++ IK + A +A IV++ K LG+ Sbjct: 1 MEFIQRYNQNKDKLTKSENKLANYIATHTEHVIYDTIKSLGTANNTGDATIVRLCKKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SGF +L+ AL + E ++ +KV + +I + + ++N + + Sbjct: 61 SGFSDLKIALAQDSMMTTSKSHEEAQ---TSSELSSKVL---ISSIEKTEELINPSVLKQ 114 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A +AR+ ++G G S D + +LRIG+ A D HI + A+LL + D+V+ Sbjct: 115 AVSLLAKARRIHIFGLGHSGESARDYERTWLRIGLIANAESDPHIQVQVATLLSKDDLVV 174 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG T D ++++AK+ GAKII IT+ SPIA+L D + + E + + Sbjct: 175 GLSLSGHTKDTYDSLKVAKEYGAKIIAITNDLTSPIAQLGDVSLQTSVSE-FMNIGTVAG 233 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++ QL L D +LN + ++ A V Sbjct: 234 QVSQLYLCDVLAREYEKLNKVDVDKIKEQALAAV 267 >UniRef50_C2HLD1 Transcriptional regulator n=3 Tax=Lactobacillus RepID=C2HLD1_LACAC Length = 284 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 126/279 (45%), Gaps = 1/279 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ K+ + + E + ++++ + +I+ +++ +S A IV+ + +G + Sbjct: 3 NIFSIIKGKKSQLPKKEQLLGDYIIANPENVISSSIQKLSKDTGISTATIVRFCREIGTN 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ L S E E + N + I QS +N + + +A Sbjct: 63 GFSDLKLQLVAAQSSVNNNDYHEFDAGEGIAAIKNTMAARFESAIEATQSGLNDNSVEKA 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 R Y + +YGAG S + +D+ KF+R+G D H+ + + D++++ Sbjct: 123 VRKIYNSSSILVYGAGASGIVASDMYQKFMRVGKNINYISDLHVALAQLASFTSDDLLIL 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP-ETPLLGRNASA 253 +++ G+T++V ++A K G + +T + S +AK AD ++ + E + ++ Sbjct: 183 ISNDGKTTEVSDIQKVADKFGIPTLLLTANPRSFVAKKADLVLLTQDIGEPSIRSGATTS 242 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 I Q+ ++D S ++ ++ ++++ Sbjct: 243 LISQMFVVDVLVFSYVSVHSDEVLKKLKRSNEATAIHKN 281 >UniRef50_C5BVH6 Transcriptional regulator, RpiR family n=2 Tax=Actinomycetales RepID=C5BVH6_BEUC1 Length = 299 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 5/282 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + L + +E RI E +L I+ +A S+ + + + +G +G Sbjct: 16 VLTRLPGLLPTLRSSERRIAEAILDDPQAVSRDTIEQLAARCGTSKTSVTRFCRTIGLAG 75 Query: 76 FRNLRSALEDYFSQSEQV-----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 + LR AL + L S VV+++ +R + E ++ Sbjct: 76 YTELRLALAGDVGRRRDESWRAELGSSADPQNPADVVVDELLTANVRALTETVRTLDRAA 135 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + + A + DLYG GGS + AD+Q +F RIG A+ ++H + A++L D Sbjct: 136 LAASVDALASAGRIDLYGIGGSGTVAADLQRRFHRIGRVAHAWSESHDALTGAAMLGASD 195 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRN 250 V + ++H+G TS+V AA+ LA+ GA I +T+ S +A AD ++ + A E Sbjct: 196 VAIALSHTGETSEVAAALALARDRGATTIAVTNYPGSAVAAAADLVLVTAAHEERARADG 255 Query: 251 ASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + R Q+ ++D +V VA + +++ +++T V Sbjct: 256 LAGRHAQMFVVDCLYVLVAGVLHDESQSGLRRTSEAVRSTRR 297 >UniRef50_A1JQZ2 RpiR family regulatory protein n=12 Tax=Enterobacteriaceae RepID=A1JQZ2_YERE8 Length = 286 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 133/284 (46%), Gaps = 7/284 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + + EN+ +I + +L + + AE VS++ IVK S+ +G Sbjct: 1 MSILNEITWLLPELAENQKKIAKCILDNPESILSISSSQFAEDAGVSQSAIVKFSQKIGM 60 Query: 74 SGFRNLRSALEDYFSQSE-------QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIV 126 GF L+ A+ + S++ + L + ++ +++ + K+ + +IME + Sbjct: 61 KGFPALKIAISEELSRNNLFKSYPHKALHNSISPEDSLMVMAQKLAHEKTASIMETTRKI 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 N + A++ + G G+ D+ +K +IG+ D H+ + +A L Sbjct: 121 NFSVFQQVVSLINAAQRVQIVGIWGAGLTAKDLSYKLQKIGIMTLVEADLHVQIAAALTL 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 DV +V++ +GR D+K A +AK GA +I IT S SP+AK+ADY++ S + E Sbjct: 181 TPKDVQIVLSFTGRRKDMKIAATVAKAQGATVIAITGSKVSPLAKIADYVLESISDENEW 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + S+R Q TL D F+++ Q E A + ++ Sbjct: 241 RSSSISSRTAQNTLTDLIFLALMQQRKEMAKPLILNASMTINNL 284 >UniRef50_A8RZI5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI5_9CLOT Length = 294 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 124/294 (42%), Gaps = 11/294 (3%) Query: 10 LPNGIGLAPY-------LRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 + + +R K + + + ++L I+D+A VSEA Sbjct: 1 MGMNMNFEQVTPTIVLDIRSKMQDFNPAQKAVANYILNNFYDMEGMPIRDLAVESEVSEA 60 Query: 63 MIVKVSKLLGFSGFRNLRSAL---EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTI 119 + + K +G+ +R + + + + +E+ ++ + K+F ++ + Sbjct: 61 TVSRFVKAMGYENYRAFQLEVTKSKAERRKGSLKGYAEVTEEDNAPGICRKIFESNIQAL 120 Query: 120 MEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIM 179 + ++++ D + RAA +AR+ ++ G S ++ + R+G+ Y D H Sbjct: 121 QDTLTVIDYDALERAADLIARARRLCIFAQGRSKVTANSIRLRLHRLGIEGTLYTDPHEQ 180 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-C 238 +++SL+ DV + ++ GR+ + ++ A G+ II +T ++P+ K AD ++ Sbjct: 181 AIASSLMGPEDVAVGISTFGRSRSILVSIRRAAARGSSIIGVTSYQNTPLEKEADILLRT 240 Query: 239 SPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 E + A + Q+ +LD ++ VA+ +A + T + Sbjct: 241 VNNDEADFGSEPSCASVTQMVMLDCLYMLVAKRMEGKAEERFKITRDAIQQEKE 294 >UniRef50_A8RDU7 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RDU7_9FIRM Length = 281 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 123/279 (44%), Gaps = 6/279 (2%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + + LR ++ +E+ + ++L+ + + +++A S A ++++ K L Sbjct: 2 KMSVLVKLRE-YHTLSNSENEVRMYILRNSKKVISMSTQELAAKSYTSPATVIRLCKRLE 60 Query: 73 FSGFRNLRSALEDYFSQSEQVL-----PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 G+ L+ L E + + ++ ++++KV +I++ +I E + +++ Sbjct: 61 LKGYSELKIQLASEIKAFETMNLDVVDQTTFKKGDSLTELIDKVTDISIHSIEETRLLLD 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 + + AR A DLYG G SN I D +KF+RIG + A Sbjct: 121 YEVLLCVARQIMDASIIDLYGVGASNNIAFDAGYKFMRIGKSISCLSLIDRQRIQAINSD 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 +++++SG T ++ ++ +KN + IT S + + L +Y + + E+ Sbjct: 181 SSHFAIIISYSGETPEIIEIAKILEKNNVPAVSITGSIQNQLVNLVEYNLFVSSRESNFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAI 286 +R L +LD +++ LN + + + +T I Sbjct: 241 NGAIVSRTSTLYMLDLIYITCISLNYDDSAKRLGQTLTI 279 >UniRef50_UPI00016945F6 hypothetical protein Plarl_13824 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016945F6 Length = 248 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 4/246 (1%) Query: 53 VAEALAVSEAMIVKVSKLLGFSGFRNLRSA----LEDYFSQSEQVLPSELAFDEAPQDVV 108 +AE VSEA IV++S+ L G++ L+ L + + E+ D + Q +V Sbjct: 3 LAELAEVSEATIVRLSRSLNLKGYQELKLRIAADLAQSLNSNLAESYQEIHMDASSQSLV 62 Query: 109 NKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGV 168 + + +R+I + S++N+ E+ RA AR+ L+G G S I D + K RI Sbjct: 63 ESISHNNMRSIQDTMSVLNIKELDRAIEVLGGARKITLFGIGASAVIAQDFKQKLTRINR 122 Query: 169 RCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSP 228 C+A D A+ LQE D VL +++SG T D+ A++ AK+ GA +I +T H+P Sbjct: 123 WCEAAYDFDSQATLAANLQEKDAVLGISYSGNTQDILLAMQAAKERGATLISLTKFGHNP 182 Query: 229 IAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 +A+ A + + + E + ++RI QL ++D +V +A+ N E+ + ++ T V Sbjct: 183 VAEQAHIRLFTSSLEKSIRSGAMASRIAQLNVIDILYVGIARQNYEENILALENTRKAVK 242 Query: 289 FFSPGA 294 + Sbjct: 243 MMNRHG 248 >UniRef50_Q040R4 Transcriptional regulator n=8 Tax=Lactobacillus RepID=Q040R4_LACGA Length = 283 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 114/280 (40%), Gaps = 1/280 (0%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L+ + +I ++LL + + + S A +++ + LGF Sbjct: 1 MDLSTKVLNNYPNFKGASKKIADYLLAHPKTFLQEDAQGLGKMTKTSAASMIRFCQQLGF 60 Query: 74 SGFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 G ++ + L +E+ + + + P V+ K+ + + + +++ ++ Sbjct: 61 KGLKDFQIQLAQDTPQDNEETIDPIVDHHDNPHIVLQKLLSSIEKNTEQTAHLIDGLALN 120 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 +A F A + L G G S+ D+ +KF+R D HI + D + Sbjct: 121 QAINFLKNADRIYLAGVGASSLPAQDLYYKFIRSDKNVVFNQDIHIALERICYSHSTDAL 180 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 ++ ++SG T ++ + A+KN II +T S SP+ +LAD ++ E L + Sbjct: 181 VIFSYSGLTQEILLMADQARKNHTPIIVVTRSRQSPLVELADVVLGVSTDEKLLRVGAIN 240 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + ++ + F++ + + ++T I + Sbjct: 241 SLFSEMFVSSVLFLATINQELPRLEERFRETELITNQLKQ 280 >UniRef50_Q5WK55 RpiR family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK55_BACSK Length = 268 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 142/277 (51%), Gaps = 13/277 (4%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +++ ++ E RI ++++ IKD+A +VS A I + + +G + Sbjct: 4 MLQQIQVNYHALSAAEKRIADYVMSAPEELANIHIKDLAAKCSVSVATITRFCRKVGAAN 63 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F + ++ D E+ +++ ++ +I I + ++N D+I +AA Sbjct: 64 FVEFKMSVRDSIRTEEEG-----------GELIAEMESIYKAIIGGSRELINQDDIVQAA 112 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A + ++YG G S +++ + +R+G+R + D+H M+M+ASLL DVVL + Sbjct: 113 TLLENANRIEIYGIGSSGLSGQEMKFRLMRMGMRVDCHIDSHTMVMNASLLTAADVVLAI 172 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG T D++ AV LAK+NGA +I +T+ H+P++++AD ++ S +P+ +A++ Sbjct: 173 SNSGHTVDIQEAVALAKENGATVILLTNHEHTPLSEMADLLLLSFSPKPFYARGFLNAQL 232 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + +LD V N E+A +KT + Sbjct: 233 SIVHVLD-LISLVLAQNEERAKAR-RKTLHALSQLKK 267 >UniRef50_UPI00016A71F3 transcriptional regulator, RpiR family protein n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A71F3 Length = 300 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 8/291 (2%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 MS ++ DS L + + + + + + L + + ++A VS Sbjct: 3 MSSTDIDS------DLFSLIHARLPDLAAAQRLVAKVFLDKPEWAMQAHVNEIAVFAGVS 56 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 E +V+ + LGF G R+ + + + L + ++ ++V KV + ++ Sbjct: 57 EPTVVRFCRALGFHGLRDFKLRVAQQVALGSVALHRNVTAVDSIDEIVGKVLRSSADILL 116 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAG-GSNAICADVQHKFLRIGVRCQAYPDAHIM 179 + + + ++I RA A + D YG G S + AD Q + R G++ Q Y DA++ Sbjct: 117 DIERQLPREQIKRAISALGSAHRVDCYGVGTTSGFVAADAQARLFRFGIQAQTYTDANMQ 176 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS 239 M SA+ L GD V+ V+H GR + AV +A++ GA +I I +P+A D + Sbjct: 177 MFSAATLSPGDGVIAVSHFGRMPFLLEAVRVARERGAVVIGICE-PGTPLAGECDIPLTF 235 Query: 240 PAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 P + + A I L ++D V VA +++ ++ Sbjct: 236 ALPASVNAYIGSDACIAHLAIIDILIVGVAFERGAAGIEQLRRLQNVLSPH 286 >UniRef50_Q0BBX6 Transcriptional regulator, RpiR family n=65 Tax=Proteobacteria RepID=Q0BBX6_BURCM Length = 324 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 126/294 (42%), Gaps = 2/294 (0%) Query: 2 SQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSE 61 + + P + + + + E E ++ ++L + +I +A VS Sbjct: 25 AADPTAAVAPPLLDIVARIAECAPELREAERKVAAYILADLARAAHASIGALARDAGVSV 84 Query: 62 AMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIME 121 A + + +K +G R L+ + + ++ L A + V++ + Sbjct: 85 ATVTRFAKAVGCRDVRELKVLVAQAAAVGQRFLVPSDAHPAEDASPASVVYDEIRVALAH 144 Query: 122 GQSIVNVDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 ++ AA A+ +YG GGS A+ +++ + +R G +Y D+ + Sbjct: 145 NHQLLRNTSFDAAADLLAGAKMVYVYGQGGGSTALADELRFRLVRFGRPVASYQDSLLQR 204 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 M A+ L VV+ ++ SGR ++ + LAK+ GA +I IT SP+AKLAD++I Sbjct: 205 MVAATLSRDAVVVALSVSGRVPELLESCRLAKRYGATLIAITA-PASPLAKLADHLIPVV 263 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 A ET + + +++R + +D VA + ++++ +D G Sbjct: 264 AFETDFIYKPSTSRYAMMMAIDVLVTGVALRLGDAGRESLRRIKHALDAHRGGG 317 >UniRef50_D0RS60 RpiR family transcriptional regulator n=2 Tax=Lactobacillales RepID=D0RS60_9STRE Length = 277 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 127/275 (46%), Gaps = 10/275 (3%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P + +T E +I ++ L L+ + + V++ L VS + + +K GFS Sbjct: 4 NILPVIESVYGSLTHLEKKIADYFLSAEALTADLSAQAVSQRLYVSVPSLTRFAKKCGFS 63 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+R ++ S+S+ V +D+ V + + + S+++ ++ R Sbjct: 64 GYRQFIFEFQESSSESKNV----------SRDLTRNVLSDYGELLNKTFSLIDEEQFLRV 113 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A + +YG G S + +++ +F+R+G+ C+A D H++ M+ +L +V+ Sbjct: 114 GDMLNNAGRVYIYGQGSSGLVAREMEFRFMRLGMVCKAITDDHMIRMNRVMLNPDCLVIG 173 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG T + A++ AKK GAK + +T + + + D ++ + G N S + Sbjct: 174 ISISGETKIITQAIQNAKKVGAKTVLVTSNNSDDLRQQCDELVLVAVKKHLAQGNNISPQ 233 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 L ++D F+ L+ + + T + ++ Sbjct: 234 FPVLVVMDIFYAYYMDLDRDHRSQIFTNTLSALEE 268 >UniRef50_B7RLA4 Transcriptional regulator, RpiR family n=1 Tax=Roseobacter sp. GAI101 RepID=B7RLA4_9RHOB Length = 317 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 126/280 (45%), Gaps = 3/280 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + LR + E ++ ++ A I ++A VS +++ + LG Sbjct: 30 DVISALRRHDGHLATQEQKVANYVKAHLEDISAMTIAELAGHCDVSTPTVIRFCRTLGCD 89 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFD-EAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GFR + L + S Q L ++ + +N++ + + ++ + + R Sbjct: 90 GFREFKLRLAQNLAVSMQYLSADPQPEPADGDTAINQILGGIYASANVMRRQIDPEVLDR 149 Query: 134 AARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A + R G GGS+ + + ++F R+G+ + D++I+ M A+ LQ GDV+ Sbjct: 150 AKSALLKTRHLLFAGIGGGSSNVSQEAANRFFRLGIPSFSTSDSYILQMRAATLQAGDVL 209 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +++ SG + A E+A GA ICIT S + +A + + I PE + + + Sbjct: 210 FLISASGEADAIVGAAEIAGGYGATTICITKSG-TRLANVCNIPILIDLPEDRDIHKPTA 268 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +R + + ++DA +SVAQ + N+++ A + + Sbjct: 269 SRYIHMIIVDALAMSVAQDLAHETTENLRRIRASLTAYHG 308 >UniRef50_B1R0U2 Transcriptional regulator, RpiR family n=9 Tax=Firmicutes RepID=B1R0U2_CLOBU Length = 284 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 3/282 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + E E +I +++LK G I ++AEA S+A + + + Sbjct: 1 MEKDKSIIDTIYAEYNSFFEAEKKIADYILKYGTKLIEMTISELAEAAGTSDATVTRFCR 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELA--FDEAPQDVVNKVFNITLRTIMEGQSIVN 127 GF +L+ L S+S++ +E ++ +N + + + + +N Sbjct: 61 KCNMKGFHHLKITLAKELSESQKEDTRVSGDVSEENIKESLNNILFNKIEEMKQTILTIN 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 ++ + A G + + D +KF ++GV A + L+ Sbjct: 121 EEKFKEILQILRNAGIVQFVAVGNTIPVALDGCYKFNQVGVASVANTIWETQIAYTYNLK 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 E DVV+ +++SG + + +E+AK+ GA I IT+S SP+AKL++Y I + E L Sbjct: 181 ENDVVIAISNSGASKRLIDVIEIAKEKGAVTIAITNSDKSPLAKLSNYHIKTATREKLFL 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 +RI +T+++ F+ + + + + + Sbjct: 241 EEYYFSRISAMTVIEILFLFMTVGKHD-VYKTLSRHEQSIAD 281 >UniRef50_Q1J2N3 Transcriptional regulator, RpiR family n=2 Tax=Deinococcus RepID=Q1J2N3_DEIGD Length = 290 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 131/280 (46%), Gaps = 6/280 (2%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 M+ + LP + LR +Q T R+++ +L + I +++EA S Sbjct: 1 MATPP--AHLPPVLRRLHLLREEQGAAT---VRVIDQILMDPERFLSLTIAELSEAAGTS 55 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 +A +V++ + LGF G++ + L + S + + +A ++ K+F+ + + Sbjct: 56 DATVVRLVQHLGFGGYQEFKLQLSRALAVS-RKADLTVEPQDASVTILRKIFDSSNTALD 114 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 + +N++ A + AR +L G G S + Q++ LR+G+ C+A D + Sbjct: 115 DTLEHLNLEAFSAAVQAMTLARHIELIGMGASGVVALSGQYRGLRLGLSCRASTDPGTFL 174 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 + SLL+ DV++ V+ SG V A LA++ GA ++ +T +P++K+ + + Sbjct: 175 STCSLLEPTDVLIAVSFSGTRPQVVQAARLARQAGAIVVALTGLGRTPLSKVVHHTLTVS 234 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINM 280 AP + +I Q+ +LDA F S+ + + Sbjct: 235 APGDRYRPEGLATQIPQVAILDALFTSLHVAQDPYLSERL 274 >UniRef50_Q02YU6 Transcriptional regulator n=4 Tax=Lactobacillales RepID=Q02YU6_LACLS Length = 273 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 144/274 (52%), Gaps = 7/274 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ K E +T++E +I ++L + D+ +A+ V +A IV+ + LG+ Sbjct: 1 MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SGF +L+ + + ++L ++ N + + E +S +++++ + Sbjct: 61 SGFSDLKIEVAKESYSQKSSNRTDLTL------FFDENENSIIEILHETKSKLDLEQFEK 114 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 +++ +A ++G G S D++ FLRIGV +A +H + +A+LL++ D+++ Sbjct: 115 SSKLISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISGSHFQLQTAALLKKTDLII 174 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ SG+T ++ ++++AK+ A+II IT S +SP+A+L+D + + E G + + Sbjct: 175 GISLSGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQT-VNEEFFDGGSLTG 233 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +I QL + + + +L +++ + + V Sbjct: 234 KISQLYICEILVKNHERLYKDKSIQSREAIIRAV 267 >UniRef50_A6LRG7 Transcriptional regulator, RpiR family n=2 Tax=Firmicutes RepID=A6LRG7_CLOB8 Length = 291 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 113/275 (41%), Gaps = 1/275 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + + E E +I ++++ + ++A +VSEA IV+ K Sbjct: 15 SVLDKILCIYKSLHEAEKKIADYIINNKERVIEMTVSELALESSVSEATIVRFCKKCDLK 74 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ + + S + + + + + S++N I R Sbjct: 75 GFYDLKIKIAKEMVNLKSSNISNELDSNNIMQSLQNILANKIEELKQTISMMNEGNIKRI 134 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 AR G + + D +KF ++G+ + + L + DVV+V Sbjct: 135 LEAIKGARIVQFAAVGNTIPVAMDGAYKFNQLGISSVTNTIWETQLAFSYTLTKEDVVIV 194 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 +++SG + ++ A +E+A + A I IT+ +SP+A + Y I + E L + +R Sbjct: 195 ISNSGASKELVALLEIANERQATTISITNHENSPVANKSKYHINTSTREKLFLDEFSFSR 254 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 + + +++ ++ + + E A + + + Sbjct: 255 VSAMVVIEILYL-LLTRDKEDAYNWISQHEQSIAE 288 >UniRef50_C5EPZ9 Transcriptional regulator n=2 Tax=Clostridiales RepID=C5EPZ9_9FIRM Length = 295 Score = 239 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 125/289 (43%), Gaps = 16/289 (5%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L ++ + ++E + ++ L +I +A A VS+ +++ K LG G Sbjct: 5 LEYEIKRIYASLRKSEQKAADYYLGYDGPVETMSIAAMARAAGVSQPTVMRFVKALGLEG 64 Query: 76 FRNLRSALEDYFSQSEQVLPS---------------ELAFDEAPQDVVNKVFNITLRTIM 120 F+ + + E++ + P++V +V ++ + Sbjct: 65 FKEFKYQVLKASMGGNGSGMGEEEGGRSEEVLRYGYEISARDRPEEVPGRVVAQSVSYLD 124 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 + ++ I RAA+ ARQ +Y S ++ D+ K + +G C Y D ++ Sbjct: 125 DALKHISPSSIGRAAKLICGARQIAVYYVENSASVAGDLVTKLMYLGFNCIMYNDIYLQH 184 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 +SA L DV + +++SG + + ++LAKK GA I IT+ HS IA AD ++C+ Sbjct: 185 ISAGNLDSRDVAIGISYSGSSKNTVDVMKLAKKKGAATIAITNFEHSLIAGHADILLCTS 244 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 + + G +R+ Q ++D ++ + + + ++ I+ Sbjct: 245 SQQLLY-GNAIFSRMSQTAVVDMIYMGIILRDYGHFTEKLDESSRIIRR 292 >UniRef50_UPI0001BCD92E RpiR family transcriptional regulator n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCD92E Length = 288 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 109/273 (39%), Gaps = 6/273 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + + + + + + E R+ +++L+ + D+A A S+A +V+ K Sbjct: 1 MSEPVSILEKIFSIYPVLFDAEKRLADYVLQNEAKVVDMTVSDLAAACGTSDATVVRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDE----APQDVVNKVFNITLRTIMEGQSI 125 G +GF +L+ + + + +E + +F + + + Sbjct: 61 KCGCNGFHHLKINMAKEMATKPSDGAPIVGSNELDCARMDVSLRNIFASKQEELRQTLAE 120 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 ++ AR G + + D +KF +G+ + P M+ Sbjct: 121 IDPAVFRSVVERIRAARFIFCAAMGNTIPVAMDAAYKFNELGLTAISAPVWENMLAMMHT 180 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 DV+L ++ SG T D+ V A+ GA I+ +T+ HS IA+++D ++ + + E Sbjct: 181 ATPDDVLLAISASGETKDLMRIVSAARGRGAYIVLVTNQVHSSIARVSDRVLHAVSQERM 240 Query: 246 LL--GRNASARILQLTLLDAFFVSVAQLNIEQA 276 +S R+ +++A + + + + + Sbjct: 241 FFRTFSFSSTRLSMTAVIEAVYYMLLSVKRDSS 273 >UniRef50_B5FDJ7 Transcriptional regulator, RpiR family protein n=48 Tax=Gammaproteobacteria RepID=B5FDJ7_VIBFM Length = 283 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 142/282 (50%), Gaps = 6/282 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ ++ ++ N +I++++L + + + +A + VS++ IVK+++ LGF Sbjct: 1 MNILEKIQNQRSNLSSNGIKILDFILDDPASISSYSSQALAAKVGVSQSSIVKLTQRLGF 60 Query: 74 SGFRNLRSALEDYFS------QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 GF + A+ + + E+ + +++ D++ + K+ ++ + +N Sbjct: 61 KGFTAFKLAIIEDLGRKQAILEPERPIHNKINSDDSSLTIAQKLVQEKTHALIATTNAIN 120 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 E QA++ + G GGS D+ K L+IG+ D+H+ + +A+ L Sbjct: 121 FSEFELVTTLLNQAQRIQIVGIGGSALTAKDLAFKLLKIGMTALTEQDSHVQIATANTLT 180 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 + DV +V+++SG ++ A + A GA +I +T + SP+ KLA++ I + A E Sbjct: 181 KQDVQIVISYSGSRKEILMAAQTAMDKGATVIALTSTKKSPLRKLANFCIDTIADERQFR 240 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 + S+R Q + D F+++ Q+ ++A + + + + ++ Sbjct: 241 SSSISSRTAQNVITDLLFMTLLQIKSDKAKLLIDEISSTMNR 282 >UniRef50_P46117 Uncharacterized HTH-type transcriptional regulator in aarA 3'region n=5 Tax=Enterobacteriaceae RepID=YARA_PROST Length = 282 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 57/274 (20%), Positives = 119/274 (43%), Gaps = 1/274 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 L L E R+ +LL + A + ++A+A VS A +++ ++ +G+ Sbjct: 5 TLTSKLESLLNRGKGTEQRLARFLLDSRDNFVAMNVAELAQAAGVSSASVIRFTRQMGYR 64 Query: 75 GFRNLRS-ALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 G+ + + L D + L L + + ++ K + + I + +++ + + Sbjct: 65 GYSDFKVDYLSDEKQYKAESLSGSLNPYDDTEQIIAKSGQMFITAIEKSLELLDPNTMDE 124 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A+ +A++ L+G G S + D+ +K +R+ PD H+ + +S + D+V+ Sbjct: 125 IAQKIVEAKRIVLFGVGTSAIVAYDIFYKLIRVNKYALFSPDLHVQLSYSSNVDADDLVI 184 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +T G T D+ ++LA K G I +T +LAD ++ E + Sbjct: 185 AITAKGNTPDINHMLKLANKKGCSTIVLTRFGQDEAVRLADLVLPYFYDEQLFQTGVITP 244 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++LQ+ + D F L E + +QK + Sbjct: 245 QVLQMVVFDTLFFKYLTLTNEDVVLALQKEREAI 278 >UniRef50_UPI000197BCAC RpiR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BCAC Length = 283 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 129/272 (47%), Gaps = 2/272 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + LR ++ ++ E ++ E+++ + +I+ +A+ VS I+++ LG+ G Sbjct: 2 IDLKLREARDSLSTKEKQVAEYIIANKKNMQSMSIQSLAQENKVSTTTILRLCHKLGYQG 61 Query: 76 FRNLRSALEDYFSQSE--QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +L+ L + +L ++ +++ + V +KV I +I E ++VN++ Sbjct: 62 FSDLKIDLISSINHKSYGTLLQEDIDINDSMETVNHKVGLIEKSSIEETCALVNLNAFKL 121 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A ++++ +YGAG S + + +++ ++I + D I + L + D+V+ Sbjct: 122 ANELISKSKKIVIYGAGSSGLVAKEFEYQLIKIKKDVNCHLDYSIQFSIVNTLDQNDLVI 181 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++HSG + + LA++ I IT S ++ LA+ ++ + + E + Sbjct: 182 VISHSGENHECIKLLTLARELKVPTIAITKMGQSSVSSLAETVLHTISTEHVSRLIPIRS 241 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGA 285 +I QLT+++ ++ ++ T A Sbjct: 242 KISQLTVINMLITNLFIKQYDERIQKQISTRA 273 >UniRef50_P37767 Uncharacterized HTH-type transcriptional regulator yfhH n=149 Tax=Enterobacteriaceae RepID=YFHH_ECOLI Length = 282 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 131/281 (46%), Gaps = 4/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R + +G+ +++ ++ ++LL + + + + +A VS++ +VK ++ LG+ Sbjct: 1 MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQV----LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 GF L+ AL + + + + +++ D+ + V K+ + ++ + + Sbjct: 61 KGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEE 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 ++H AR+ L G G S + + K ++IG A D H ++ + Sbjct: 121 KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPD 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D++L ++++G ++ A + + G K++ IT + + + A + + + A E Sbjct: 181 DLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA 240 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + SA Q L D F+++ Q ++E A ++ + A+V Sbjct: 241 SISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKL 281 >UniRef50_B7X566 Transcriptional regulator, RpiR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X566_COMTE Length = 282 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 129/281 (45%), Gaps = 6/281 (2%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + E +T E R+ + +++ + + ++A VS+ +V+ K LG+ G Sbjct: 1 MLDQVMATLETLTPAEKRVGKLVIENPRRFASMSTSEIASECFVSQPTVVRFCKGLGYGG 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + L S + S + + +V KV + ++ T+ ++ V I RA+ Sbjct: 61 LTQFKQKLRGDRSDGVPYVHSSVDAGDTSFNVALKVVDSSIATLALFRTYVPKISIERAS 120 Query: 136 RFFYQA----RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A R YG+G S + D Q +F R+G A D + +++A+ +EGDV Sbjct: 121 NTLAAAYSEQRSLSFYGSGHSGVVAQDAQLRFSRLGFNSTALNDGYSQVLNAASRKEGDV 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V+ ++ SGRT ++ +V++AK+ GA +I +T S +P+A + + + E Sbjct: 181 VVALSCSGRTKELLESVDVAKRQGATVIAVTGSG-TPLATMGSIHLATDHLEDIDRYLPM 239 Query: 252 SARILQLTLLDAFFVSVAQLNI-EQANINMQKTGAIVDFFS 291 S+R+L L ++D +VA + +++T + Sbjct: 240 SSRLLHLVVIDIVATAVALQIGCGRLQDQLERTQNHLRHRR 280 >UniRef50_C6B6F5 Transcriptional regulator, RpiR family n=7 Tax=Alphaproteobacteria RepID=C6B6F5_RHILS Length = 287 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 3/281 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + L+ + ++ +ESRI E ++ + +I ++AE VS + + + LG Sbjct: 1 MDIFSTLQEDKGRLSPSESRIAEIIVNDFEFAVNASIIELAERAKVSPPTVTRFCRRLGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F + + L + L E + P DV + + +++ I Sbjct: 61 ESFSDFKVQLARTAHIGVRYLKPESKSTD-PADVAQDIITKAQNALFLLHRSLDLAAIEA 119 Query: 134 AARFFYQARQRDLYGAGG-SNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A +A +G+GG S+ I ++Q++ R+G+R A D + +M A+ + GDV+ Sbjct: 120 AVSHIAKADMIYAFGSGGNSSMIADELQNRLFRLGLRITASSDHSMQLMMAAAARPGDVL 179 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + + SGR ++ A ELA++ K I +T + SP+AK A+ ++ PE + R S Sbjct: 180 IGSSFSGRNMELVRAFELARQTKVKTIALTQT-DSPVAKAAEIVVPIDLPEGHNIYRPTS 238 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 RI + +D VA +A +++ + G Sbjct: 239 TRIAYIATIDILSSLVAYAVQPKATTTLRRIKQQLVIHRDG 279 >UniRef50_UPI00017F2FF2 transcriptional regulator n=1 Tax=Escherichia coli O157:H7 str. EC4024 RepID=UPI00017F2FF2 Length = 285 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 3/285 (1%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + +G + + +T+ E RI +++ +I +A+A+ V EA I++ K Sbjct: 1 MKTRVGFNTLINTRINELTQTEIRIYQFIKNNRMRFIDMSIAKLADAMNVGEASIIRFCK 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD---VVNKVFNITLRTIMEGQSIV 126 LG+ G L++ L + +L + DE + ++ N I E ++ Sbjct: 61 KLGYKGLSELKTTLRLETDTDDTLLSKVTSLDEQTNSMTGIAQQLANNNYFAINETLALQ 120 Query: 127 NVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + RAA + A Q YG G S +++F+RI A D H M ++++ + Sbjct: 121 EEQALVRAADYLSNAGQVYFYGIGMSAISVLYAKYRFMRIMANVDALIDNHTMTLNSNNV 180 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 + DVV+ ++HSG T DV A++ K+ GA I I+ HS +++ AD ++ + P Sbjct: 181 GKKDVVVAISHSGETRDVVDALKRVKEKGAVTIVISKLQHSSLSQYADVVLLTGGTSNPY 240 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +++ Q ++D F ++ +N + + I++ Sbjct: 241 QSDSSTITAAQSFMVDVLFNALLFINRGGNVEKIISSLDIINKTK 285 >UniRef50_A9MLD6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MLD6_SALAR Length = 293 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 3/264 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + YL + E +++I ++L+ L +K +A+ + VSEA IV+ K + Sbjct: 4 NKENVRVYLANILGSLGETDAKIAGYILQQPGLVVQFPVKKLAQEIGVSEATIVRFCKKV 63 Query: 72 GFSGFRNLRSALEDYFSQSEQ---VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 G+ G NL++ L+ ++ D++ DV K+ + E ++++ Sbjct: 64 GYGGLLNLKADLKRELLAENDLSLPSSPDIFLDDSRNDVAQKIALTIETSARETIGLLDM 123 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + F AR+ G G S + + K R+G+ A+ D M + + L+ Sbjct: 124 KIVKPVVERFLSARRVMFVGFGASGLAALEARDKMNRLGIDSDAFTDRFTMTLKLANLKR 183 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 D+V+ +HSG T +V A LA+K GA + ITHS HSP+ +LA+ + P+ G Sbjct: 184 DDLVVAFSHSGETPEVVNAFRLAQKKGAYTLAITHSPHSPLNELANTFWLTSGEAGPMQG 243 Query: 249 RNASARILQLTLLDAFFVSVAQLN 272 + S RI QL +++ + + N Sbjct: 244 DSISTRISQLFIIEFLCTEITRHN 267 >UniRef50_D2AGN5 Transcriptional regulator, RpiR family n=1 Tax=Shigella flexneri 2002017 RepID=D2AGN5_SHIF2 Length = 333 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 125/266 (46%), Gaps = 7/266 (2%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + +R + T NE +I ++L + + + + +A+ L +S++ IVK ++ LG Sbjct: 67 KMLYLTKIRNAESEFTGNEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLG 126 Query: 73 FSGFRNLRSALEDYFSQSEQV-------LPSELAFDEAPQDVVNKVFNITLRTIMEGQSI 125 GF LR AL +S S + L S + D++ + + K+ + + ++ Sbjct: 127 AQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCAL 186 Query: 126 VNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASL 185 + + + +A + G GGS + D+ K ++IG R D H+ + Sbjct: 187 FDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQA 246 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 L++GDV + +++SG ++ E A+K GA +I IT SP+ +LA + + + + ET Sbjct: 247 LKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETE 306 Query: 246 LLGRNASARILQLTLLDAFFVSVAQL 271 + S R Q ++ D FV + Q Sbjct: 307 WRSSSMSTRTAQNSVTDLLFVGLVQH 332 >UniRef50_C0X148 RpiR family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X148_ENTFA Length = 295 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 122/285 (42%), Gaps = 7/285 (2%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L +R+K+ ++ E +I ++ + +L ++ +A + VS++ + + K +G+SG Sbjct: 6 LDQRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKKIGYSG 65 Query: 76 FRNLRSALEDYFSQSEQVLPSE-------LAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 F+ + + + ++ D+ + KV + ++ + Sbjct: 66 FQEFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNATQFLTK 125 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + + Y A+ +G GGS+ + D HKF+R RC D H+ + + L Sbjct: 126 ELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFVTKLTS 185 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 D V + +HSG+T + KK AK+I +T + S +A L+D I E Sbjct: 186 EDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEEGLFRA 245 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 + ++RI LT++D + + N +Q +++K + Sbjct: 246 ESLASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTD 290 >UniRef50_D1AK74 Transcriptional regulator, RpiR family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AK74_SEBTE Length = 284 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 123/276 (44%), Gaps = 2/276 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L+ +T++E +I +++K + D+++ + V +A +++ SK LG+S Sbjct: 10 FQVKLKSVYNDLTKSEKKIANFIMKNFEKTKTMTSYDISKKVNVGQATVIRFSKKLGYSS 69 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F L +++ E +L ++ + K+ N + I + V Sbjct: 70 FNELINSINK--LDQEDILEKNISLGDDIATTNTKIANQYIDVIKLTLELNPVYVFEEVI 127 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A + + G G S + D +K R+G+ D H+ S L + D+++++ Sbjct: 128 EAIIAAERIVVLGIGNSAIVSTDFVNKLARVGMNAFTNLDTHLQFSMISNLGKNDLLILI 187 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 + SG T ++ A +LAK+N +II IT + + +D+I+ + + + L ++RI Sbjct: 188 SDSGETREIIEAAKLAKQNKTRIISITKFTKNKLHAYSDFILKTASFDINLRLDATTSRI 247 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 Q T++D F+++ + + + + + V Sbjct: 248 TQFTIIDMIFINILKTDFSKYKEIITNSDNAVKLLK 283 >UniRef50_Q71VW8 Phosphosugar-binding transcriptional regulator, RpiR family n=15 Tax=Firmicutes RepID=Q71VW8_LISMF Length = 268 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 126/279 (45%), Gaps = 12/279 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + ++ + E +I +++L+ + IK++AE S + I + + + Sbjct: 1 MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +L+ + + + D+ +V++ + I ++ +I Sbjct: 61 DSFVDLKMRV---------NTAATMVPSLGYDDLFEEVYSFYHKVIDNTVKLIEPAKIRE 111 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 ++ +A++ + G G S ++ + +R+G+ + D H+M++++S+ + D V+ Sbjct: 112 VVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIITSSITTKEDFVI 171 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T ++ A+++AKKN +K+ T +S + +++D I A++ Sbjct: 172 GISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANS 231 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKT-GAIVDFFS 291 + + ++D + + Q E NM+KT + D F Sbjct: 232 QFSIMYVMDIISMMLLQN--ESYRDNMEKTINTVTDEFH 268 >UniRef50_B6G0W9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0W9_9CLOT Length = 310 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 122/276 (44%), Gaps = 5/276 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L + K ++++E ++ +++ + +K VA+ VSE I++ SK +G G Sbjct: 31 LLFRIATKYMALSKSEKKVADFIKNFNGKAEKLTMKKVAKEAGVSEPSIMRFSKSIGLDG 90 Query: 76 FRNLRSAL----EDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F L+ L +D + + ++ ++ + K+ I +++ Sbjct: 91 FNELKYCLMKTKKDDEGTMKPLHGFDINREDTIDMIPGKIVMTVENQINSMLESISLKSY 150 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A+ D+Y S + D+ K L +G+ + Y D+++ +SA L DV Sbjct: 151 SDMINCIINAKNVDIYSVENSVSSANDLATKLLYLGINVKMYTDSYLQKISAYNLTSEDV 210 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + +++SG + D ++ AKK GA + IT+ S I K AD +IC+ + + G Sbjct: 211 AIGISYSGNSKDTVEMIKTAKKRGATTVVITNYKDSKIVKYADILICTSSDQMLY-GDAI 269 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 +R +QL + D ++ + + ++ + K + Sbjct: 270 FSRAIQLVINDMIYMGIIHSDYDKYIEILNKNEKAI 305 >UniRef50_A8U5E8 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5E8_9LACT Length = 268 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 123/279 (44%), Gaps = 13/279 (4%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + N + L+ + +++ E ++ ++L+ + IKD++ S A I + Sbjct: 1 MTNNLDLSNRINQNYSLLSKKEKQVAAFILEHKKDIESWNIKDLSRLTETSNATISRFCA 60 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 L + F ++ + S + L + K+ + + I ++ Sbjct: 61 KLSYRNFNEFKTFVTQELSGNPTPLQVPV-----------KIASYYTQLIHSASQLIETK 109 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 +I+ + + + + G G S +++++ +R+G+ D H+M+M A LL++ Sbjct: 110 QINDFVEAIHLSNKILICGVGNSGLSAMELKYRLVRMGLIVDVVTDPHMMLMDAVLLKKY 169 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 D+++ +++ G+T V A +AKK A + IT+ H+P+ K+AD ++ + + + Sbjct: 170 DLMIAISNYGQTQAVIDACTIAKKEDATVFVITNQNHTPLTKIADQVLFASGRTSIPDEQ 229 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 ++++ +LD L + N +KT +D Sbjct: 230 FINSQLPIHFILDVL--CYVLLENKSYKENRRKTLTAID 266 >UniRef50_C4FU45 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FU45_9FIRM Length = 277 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 124/279 (44%), Gaps = 10/279 (3%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 +G+ + ++ E + ++++ I ++A+ VS A I + + +G Sbjct: 1 MGVLERIEANFVHLSPKEQLLATYIMQESPYFTNITISEMAKETGVSAATITRFCRKVGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F +L+ L+ +S + D+ + V R I + + ++ + Sbjct: 61 ESFVDLKIQLQASEGESASNHQN--------HDMFDTVSEFYNRIIQRTSELQSEYQLRQ 112 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + QA + +YG G S ++ + R+G+ + D+H+M++S+++ + DVV+ Sbjct: 113 LIQVLSQANRIMVYGMGSSGLTARELAIRLSRMGLPATSETDSHMMIISSTVTRSSDVVI 172 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T DV A+ AK+NGA ++ IT S +AKLAD + + Sbjct: 173 AISNSGETKDVIDALGNAKQNGAILVAITSMKGSSLAKLADETLLVHNSRFVNSEFFVNT 232 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 ++ L+DA ++ L + NMQKT + + Sbjct: 233 QLPIFFLIDAI--TLMMLENPVFSQNMQKTIQEITSINQ 269 >UniRef50_A8UCF8 Phosphosugar-binding transcriptional regulator, RpiR family protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UCF8_9LACT Length = 283 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 114/280 (40%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 G + ++ + + +E +I E++L + + A + ++++ +G Sbjct: 3 GNNILGRIKSVLDDLPNSERKIGEYILTYPEETIKMTTSQLGIAAESNSTAVIRLCNRIG 62 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 +GF L+ L ++ +E+ +E + NK+ +++ E S++N +I Sbjct: 63 VNGFTKLKVNLSAEIVSVDESGYAEIEAEETIGTIKNKLLTNAFKSMEETISLMNEFDIE 122 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 R A +YG G S I ++ K+ R+G D H ++ + + Sbjct: 123 RVIELIESASMVYVYGVGNSRIIAENMVQKWSRVGKIVICPTDNHQLVSMLGAAPKNALF 182 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 +++SG T ++ ++LAKK K + +T + + ADY I + +S Sbjct: 183 FGISNSGETREIIELIKLAKKCSLKTVGLTQFGQNSLTNKADYTIQTVKTIESDSQFISS 242 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 + QL +D F S N ++++ ++ + Sbjct: 243 SLHAQLIAIDVLFYSFLSKNYVAGTERIKQSREEMNQYKK 282 >UniRef50_A1BB20 Transcriptional regulator, RpiR family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BB20_PARDP Length = 280 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 123/267 (46%), Gaps = 7/267 (2%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + +R T E R+ E +L + + +I D A VSE I++ + L G Sbjct: 15 MLDRIRQSLASFTPAERRVAEAVLDTPSTAITWSISDAARIAKVSEPSIIRFCRRLDCDG 74 Query: 76 FRNLRSALEDYFSQSEQVLPSELAF----DEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F + R L ++ + D+ +V+ +F + I E + +++ + Sbjct: 75 FPDFRLKLAQQLAKHQPAPQPLARPGSGNDDPLAAMVDDIFQRAGQAIEEARRDLDLGAL 134 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A +AR+ D+YG G S + ++ QH+ + + AY D + M SA LL GD+ Sbjct: 135 RAAVAMLGKARRVDIYGYGSSGFMASEAQHRLAALAIPAVAYSDPTLQMHSAPLLGPGDL 194 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA-PETPLLGRN 250 + V++ SG TS + + +E+A+K GA ++ I S +A LAD + A ++ Sbjct: 195 LFVLSFSGLTSYLISNIEIARKAGAPVLAI-SPKGSIVASLADVNLNLNAYRQSSGRMAV 253 Query: 251 ASARILQLTL-LDAFFVSVAQLNIEQA 276 + R+ + + LDA F ++A+ + Sbjct: 254 PTGRVAPMYVLLDALFAAMAEEMGGEH 280 >UniRef50_B7C842 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C842_9FIRM Length = 276 Score = 232 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 106/276 (38%), Gaps = 2/276 (0%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + + ++E +I +++++ IK +A+A S+A + + ++ Sbjct: 2 ILDTIHGHYNSFFDSEKKIADYIIQHPKEVVNMTIKQLAQACNTSQASVSRFARKCQMDS 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 F +L+ L + + ++ + + + + + + ++VD+ Sbjct: 62 FHHLKVNLARDCVNEIEQKSNTISTSDISGSL-ETILSNKISELTATIRNIDVDQFSVIL 120 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A+ + G + + D KF IG+ + A L DVV+ + Sbjct: 121 SLIQNAKHVLVCAVGNTVPVALDCMFKFNEIGILTFTSTIWENQVSYALGLDSNDVVIAI 180 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG +S V A + KK G I IT++ S +AK Y I + E L +RI Sbjct: 181 SNSGESSQVLAVCKEMKKRGVPTIGITNNEDSVVAKECVYHIQTSTREKLFLNEFCFSRI 240 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 T+++ ++ + + + + + + Sbjct: 241 SAATIIEILYLFLTNA-SDNSYDRISQCEELYASLK 275 >UniRef50_C7XVK6 6-phospho 3-hexuloisomerase n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XVK6_9LACO Length = 280 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 119/271 (43%), Gaps = 10/271 (3%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 ++ + E ++ L+ L I ++A V A + + +K +G F Sbjct: 1 MEQVQNLFINLPRQEKKVARVTLQKPELVRRMNITELANQAGVGVATVSRFTKRVGCKNF 60 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 + + AL + + + ++ + N + + E ++V+ ++ +AA Sbjct: 61 ADFKLALVTPDTMQRESEQNVSTPND--------IHNYYQKILAETMAMVSTKQLRQAAN 112 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 + A++ ++G G S + + +R+G A ++++M ++++ +Q+ D+V+ ++ Sbjct: 113 LIHGAKRVYVFGIGSSGYNAQEFAQRLMRMGKPAFAMTESNMMTIASATMQDNDIVIALS 172 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 SG T +V +AV ++KNGA II +T +S + K++D + + E +++ Sbjct: 173 VSGSTPEVCSAVRDSRKNGATIIAVTAFKNSLLGKMSDLLFQIKSTELVGDYDFINSQFA 232 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 ++D + Q M KT + Sbjct: 233 VTYVIDMLTQMLLQ--FTDFRATMNKTVEAI 261 >UniRef50_C4KYQ0 Transcriptional regulator, RpiR family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KYQ0_EXISA Length = 267 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 124/277 (44%), Gaps = 13/277 (4%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + ++ MT +E +I ++L+ N + I D+A A+A S I + K +G Sbjct: 1 MWEQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGS 60 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + +L+ ++ +++ + L + + I +++ DE+ Sbjct: 61 YSSLKLMMQKTLTETNLPQTTSLEP----------MQRSYIELIQTTAHLIDQDELLAIC 110 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 + +R LYG G + + +++++ R+G+ D+H M+M AS++ DVV+ Sbjct: 111 KEITSSRSVHLYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASIVTSEDVVIAF 170 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG + +V A++LAK++G + HSP+A+L DY + + + ++ Sbjct: 171 SNSGESREVVQAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFL--INTQL 228 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 L DA ++ + N E + +T +D Sbjct: 229 PLLFTADAVTKTLMETN-EALKAHYLQTLKALDRLKE 264 >UniRef50_B2UK47 Transcriptional regulator, RpiR family n=5 Tax=Ralstonia RepID=B2UK47_RALPJ Length = 280 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 4/243 (1%) Query: 1 MSQSEFDSAL-PNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAV 59 MS + S+L P L +R + ++ E ++ +W+L+ + + +A V Sbjct: 1 MSAPQDTSSLAPPSTDLRERIRAARPSLSPAERQVADWVLRQPGTVLSLPVAAIAREAGV 60 Query: 60 SEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTI 119 S+ +++ + +G G + + L + P A +V T+ + Sbjct: 61 SQPTVIRFCRSMGCHGLSDFKLRLAQ--GNAAHDKPRGAAAPSNVPRSGTRVLQDTIDAL 118 Query: 120 MEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIM 179 + + + A A + DLYG G S + D Q KF R G+ AY D +++ Sbjct: 119 AAMRDRFDPLALDAAVALVDTAHRIDLYGFGSSGVVARDAQTKFFRYGIPANAYSDPYLV 178 Query: 180 MMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICS 239 MS ++LQ GDVV+ ++ SG +++ AVE ++ G +I +T SP+A LAD ++ + Sbjct: 179 SMSLNVLQAGDVVIAISKSGALPELQTAVERVRELGVHVIAVTA-PGSPLAALADVVLPA 237 Query: 240 PAP 242 Sbjct: 238 DVD 240 >UniRef50_B9YAK0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAK0_9FIRM Length = 364 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 112/282 (39%), Gaps = 6/282 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L+ T E I+ +++ N ++D+A S + I + K G+ Sbjct: 81 MSFFLELQKNHSS-TPVEKSIINYIINHPNEVIEMTMEDLARETYTSRSTISRFCKKNGY 139 Query: 74 SGFRNLRSALEDYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GF +L+ L + + + +++ + + +I+E V Sbjct: 140 EGFNSLKMQLAIELNLFLKDEMSSSTSLLFEKGDNASSIIDNITSQDTYSIIETVRTNPV 199 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 + I + A R G S I D +F R+G+ C+ + ++ + Sbjct: 200 EHIEKLADKILNCRHVVFLGVQFSGIIAYDAHLRFSRLGIPCKYFNTECDILTYSYFADP 259 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 DVV++ ++SG+T+ + A + + G + +T +Y++ + +++D + + + P Sbjct: 260 QDVVIIFSYSGKTAVILEAADHIRGKGTFLASVTKNYNNELLEISDLHLYINSIDDPENN 319 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + S+RI L L+D + + + + +T + Sbjct: 320 LSLSSRIAALCLVDMIYAVLVNKKSDNFYDKLMQTNKLYKKH 361 >UniRef50_A5IV96 Transcriptional regulator, RpiR family n=113 Tax=Staphylococcus RepID=A5IV96_STAA9 Length = 290 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 124/280 (44%), Gaps = 1/280 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + MT+NE +I +++L +D+A L +S + +++ SK + Sbjct: 3 NVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSKKITDG 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 GF +L+ + Y ++ + EL +E+ + + K+ T R + + +N I + Sbjct: 63 GFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDKTIDQI 122 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 ++ +YG G S + D+ K RIG+ Q + HI + D V++ Sbjct: 123 CHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSNDSVIL 182 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNASA 253 +T++G S++++ V++ II IT + +P+A+ ++ ++ E + ++ Sbjct: 183 ITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHMGATTS 242 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 Q+ +D + LN + + ++ +D + Sbjct: 243 LFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKH 282 >UniRef50_C3RHA3 Transcriptional regulator n=3 Tax=Bacteria RepID=C3RHA3_9MOLU Length = 288 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 115/275 (41%), Gaps = 4/275 (1%) Query: 19 YLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRN 78 ++ + +E ++ +++L ++ +A+ +AVS+ +++ K +G+ F+ Sbjct: 8 RIKTIYNILRPSEKKVADYILNYCGKLEDLSMTLLAKEVAVSQPTVMRFVKAIGYDSFKQ 67 Query: 79 LRSALEDYFSQSEQV---LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 + L + + + + D+ D+ K+ + +++ + Sbjct: 68 FKLELAKNYDKENNIDILYGFSINTDDKIMDLPGKIVATATSMLENALKSLSLVNYQKTV 127 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 Q++ +Y S + D+ K + +G + D ++ + AS L + + + Sbjct: 128 ALINQSQHISIYAVENSMGVAHDLMTKLIYLGKSVTCHSDYYLQSIDASNLTRDSLAIGI 187 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 ++SG + + +++AK GA+ I I + ++ + + D ++ + + + L G +R Sbjct: 188 SYSGNSKNTVEVLKIAKDAGAQTIAIVNFENTMLTRYGDIVLST-SNDQFLYGDAIFSRT 246 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 Q+ L+D ++ V + + + ++ Sbjct: 247 AQIALVDMIYMGVIISDYDNYTKKLDHYSRLIKHR 281 >UniRef50_C2KD15 RpiR family transcriptional regulator n=3 Tax=Lactobacillus crispatus RepID=C2KD15_9LACO Length = 279 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 132/274 (48%), Gaps = 5/274 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L+ + + + E +I ++L+ + I +A + VS A I + ++ + Sbjct: 1 MTFLTDLQNRLPDLPQQERKIALFILQDPQFIQSANINQLASTIKVSNATITRFARRVNC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 S F +L+ L + S+ + + + ++V++ R + E Q+ +++ ++ + Sbjct: 61 SSFTDLKVKLAAAAASSQVNT---ITNQDNSKTTAHQVYDFYNRVLSETQNKLDIKQLKK 117 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + A++ YG G S + + LR+G+ A +++ M M++S++ + D+++ Sbjct: 118 IIQLIKSAKRVYFYGIGSSGYTSLEATQRLLRMGISAFAETESNNMFMTSSIISKDDLII 177 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 ++ +G T + A+ELAKKN A ++ +T +SP+A+LAD ++ R ++ Sbjct: 178 AISSTGSTDSLVRAIELAKKNKATVVALTSYDNSPLAQLADIVVGVQDTNYINDARFINS 237 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + + ++D + + N + + M +T V Sbjct: 238 QFSIMYVIDVITTLLLKNN--KYHDRMTRTITSV 269 >UniRef50_A9IGF4 Transcriptional regulator, RpiR family n=10 Tax=Proteobacteria RepID=A9IGF4_BORPD Length = 307 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 133/290 (45%), Gaps = 5/290 (1%) Query: 8 SALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKV 67 + +P+ + +R +++ ++ E ++ + +L + + +A+ VS A I + Sbjct: 17 AGMPSPRDIVYQIRSRRDALSATERKVADAILDDIAAAAGATVDQLADKAGVSIATISRF 76 Query: 68 SKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 ++ +G R+L+ L + E+ L + +++ T+ + Sbjct: 77 ARSVGCDDTRDLKLKLAQASAVGERFLDPSTPEEST---FYARLYADIEATLRAHLPRFS 133 Query: 128 VDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 +AA +AR ++G G S + ++Q + +R+G AY DA ++ M A+ L Sbjct: 134 EALFEQAAGIVREARMTYVFGMGGASAVLSQELQSRLVRLGYAVAAYSDAVLLRMVAATL 193 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 E DVV+V++ SG T ++ A + K+ GA+I+ +T SP+A LAD ++ ET Sbjct: 194 DERDVVVVLSTSGLTPEILAGTRIVKQYGARIVTLTD-PASPLAGLADVVLPIHTAETDF 252 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK 296 + + +S+R L +D +A E +++ +D + G + Sbjct: 253 IYKPSSSRYAMLLAIDILATELALARQEATQERLRRIKLALDEYRGGPNR 302 >UniRef50_C0X6G8 RpiR family transcriptional regulator n=23 Tax=Enterococcus RepID=C0X6G8_ENTFA Length = 283 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 127/282 (45%), Gaps = 3/282 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R K + ++ RI +++LK + ++A S A + + SK LGF Sbjct: 1 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF 60 Query: 74 SGFRNLRSALE--DYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 + L+ ++ S ++ + +A D++ + KV ++ TI + V+ + Sbjct: 61 DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 RA +A + L G G S+ ++ HKF R G + D+H+M+ + D+ Sbjct: 121 ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ V++SG T + A E+AK GA +I IT + + L+D ++ P E + Sbjct: 181 LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVRSLSDEVLLVPNNEHLIRVGAI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIE-QANINMQKTGAIVDFFSP 292 S+ + + D ++ Q +++ + NM +T +V Sbjct: 241 SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLKE 282 >UniRef50_C3RI81 Sugar isomerase n=1 Tax=Mollicutes bacterium D7 RepID=C3RI81_9MOLU Length = 296 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 118/288 (40%), Gaps = 7/288 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + L +K E M++ E I ++L G + +++AEA S A ++++ K L F Sbjct: 1 MLIIEKLNLK-EKMSDGEESIAAFILTLGKELHKYSTRNIAEATLTSPATVIRLCKKLDF 59 Query: 74 SGFRNLRSALEDYFSQSEQVL-----PSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GF + + + +Q ++ +K+ ++ T+ + ++++ Sbjct: 60 KGFDDFKEQFLKEINYLDQQYGKVDANFPFNRNDTMMKTAHKISHLYEDTVTDTMTLLHH 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 D++ +A R + ++ G + + + K L+IG + + + S + + Sbjct: 120 DDLQKALRLLKNSNSIHIFSTGTALNLAESFKEKMLKIGKNVVISNNLNYQLYEVSCIPK 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLG 248 GD+ +++++SG T + + K N II IT + +AKLA + E+ Sbjct: 180 GDIAIIISYSGETINTIKIAQTCKNNKIPIIAITSFGENTLAKLASCKLTISTKESLYHN 239 Query: 249 -RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGAL 295 + S + +LD + + +Q N K ++ Sbjct: 240 LGDFSTHLATHLMLDILYSVFFLEDYDQNYDNKIKITKDLEALRSSTN 287 >UniRef50_A9BEU1 Transcriptional regulator, RpiR family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEU1_PETMO Length = 269 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 127/276 (46%), Gaps = 8/276 (2%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 + ++ +T E + +++++ +I +++ SE I +V K +G+SG Sbjct: 2 VTSKIKGIYNSLTNKEKQAAQYIIERPGDVIHYSITELSNWAGTSETTIYRVLKKVGYSG 61 Query: 76 FRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 ++ + L S + +D+ + ++N T+ + + V+ D+I A+ Sbjct: 62 YQKFKLELARELSTPTLD-------SKESKDLFDMIYNRTVNALTDILRQVDRDKITHAS 114 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 +++ Y G S I D KF +G AY D H+ ++ AS L++ DVV+ + Sbjct: 115 EIIMNSKKLLFYAVGRSFPIALDASLKFAALGFASTAYSDPHMQVIVASNLEKDDVVIAI 174 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSG D + ++AK+ GA I +T +SP++K+ + ++ + A E P +RI Sbjct: 175 SHSGVIRDTYKSAQVAKEAGAFTIGMTAGVNSPLSKIVNLVLYTSA-EMPQESEFTVSRI 233 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++ +++ + SVA + + F+ Sbjct: 234 GEMFMVELLYNSVASKMSLKNKESRISQAMKTKKFN 269 >UniRef50_B6GAC9 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAC9_9ACTN Length = 270 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 114/275 (41%), Gaps = 12/275 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNL-SCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + + + T+ E+ I ++L + D++ L V EA IV+ + LG Sbjct: 1 MSIIGKIESCLPSFTKTETIIARFILDHREDGVEQYLLGDLSRELGVGEATIVRFCRKLG 60 Query: 73 FSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIH 132 GF L+ L + + + + +I S+V+ +I Sbjct: 61 LGGFTELKFLLSVENEEHTAARENSGEIKDIL-----------ISSIKMTDSMVSSKDIS 109 Query: 133 RAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVV 192 A + +G G S + + + R G R +A +AH M ASL E ++ Sbjct: 110 DVVDLAGAASEVFFFGIGMSGLSASMGESRLFRFGKRTKAITEAHAQNMQASLCDENSLI 169 Query: 193 LVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNAS 252 + V+ SG T D+ AV LAK++GAK++ IT S +A+LADY++ S + S Sbjct: 170 VAVSISGETIDLIEAVSLAKESGAKVVAITSYLRSTLAELADYVLLSFGKPNYINAGAFS 229 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + QL +LD A +A + ++ + Sbjct: 230 TVVSQLYILDLITSEYALRFSAEAARSKKRIARSI 264 >UniRef50_Q1YGT9 Putative transcriptional regulator, RpiR family n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YGT9_MOBAS Length = 305 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 122/290 (42%), Gaps = 4/290 (1%) Query: 6 FDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIV 65 +S L +R + M + + + LL+ + + ++K VA VSE ++ Sbjct: 8 GESKALPPSSLIDRMRQELPAMKRADRAVADALLENIDAATRSSVKAVAGRAGVSEPSVI 67 Query: 66 KVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELA-FDEAPQDVVNKVFNITLRTIMEGQS 124 + ++ +G GF + + L ++ L ++ + DV V+ T + + + Sbjct: 68 RFARHMGCEGFSDFKIRLAQDYAIGRMYLSADYQHPAKTGSDVAGHVYEATSQALASAFA 127 Query: 125 IVNVDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSA 183 + + RAA +R+ +G G S + A+ +++ R+ + A DA+ ++A Sbjct: 128 QRDPAALDRAADLIDGSRRVFCFGVGGSSANVAAEAENRLFRLDLAASATADAYKQRITA 187 Query: 184 SLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYII-CSPAP 242 + + DV L+ + +GR + + AK+ GA II +T + +P+A AD +I Sbjct: 188 ATAGKDDVFLMFSVTGRPRSLIESARSAKQCGASIIAVT-TAGTPLAIEADVLIPLIAFD 246 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 E R QL +LD + ++ + + ++ + Sbjct: 247 EEKFFYMPNRGRYGQLFILDCLATLLGGRRMKHISSKLWNARTMLADLNG 296 >UniRef50_C3RM35 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RM35_9MOLU Length = 284 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 109/272 (40%), Gaps = 6/272 (2%) Query: 25 EGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALE 84 + E + +++L+ G + K++A+A S A IV+ + L + G+ + + AL Sbjct: 3 NNFSSVERILGKYVLENGEKVLNMSTKELAKATFTSPASIVRFCRKLEYEGYNDFKIALA 62 Query: 85 DYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFY 139 + ++ V + + N++ +I ++++E+ Sbjct: 63 AQLQYSRLSNDDINANYPFKGTDSVYTVASNIANLSKESIDITMKNLDLEELRLVVLMIT 122 Query: 140 QARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSG 199 +A+ D+YG G I +D Q+K RIG + + + A+ + +++++SG Sbjct: 123 KAKVIDIYGVSGPLRIASDFQYKMFRIGKDVRISQMINEQLFQAAQSTSEHLAILISYSG 182 Query: 200 RTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL-LGRNASARILQL 258 T +V A ++ + I IT + + K ++ + E S+ + Sbjct: 183 ETEEVIEAAKILYRRKIPAIAITSFGENRLVKYTQRVLYLNSSEFIYSKIATFSSTLSLH 242 Query: 259 TLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 LLD + V N E +T ++D Sbjct: 243 LLLDIIYGCVFSKNYEDNLNYKIETDNLIDHR 274 >UniRef50_Q15N75 Transcriptional regulator, RpiR family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15N75_PSEA6 Length = 282 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 140/283 (49%), Gaps = 3/283 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + ++ ++ ++ +E ++ +++L N + +++A + VS++ +VK ++ LG+ Sbjct: 1 MSTFTKIKAIKDTLSNSELKLAKFVLSSSNAVRDLSSQELANVVGVSQSSVVKFAQKLGY 60 Query: 74 SGFRNLRSALEDYFSQ--SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+ + + D + SE L ++ +++ + V K+ + + + E +++ Sbjct: 61 KGYPAFKLGVIDALNSTASEGNLHGKITLNDSFKQVSEKLLSSKVAVLTETKNLNEEAAF 120 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 H+A A++ + G GGS + D +K ++G+ PD H + A+ L E D+ Sbjct: 121 HQAVELLKSAKRILICGLGGSALVGKDFSYKLQKLGMLAIEEPDMHAQLAFAATLSENDL 180 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V ++ SG T ++ V+ AK+N K+I +T +P++ LAD + S A E + Sbjct: 181 VFAISESGSTREIVNVVKQAKQNSCKVITVTRYGATPVSDLADIKLYSVAEEESARLSSI 240 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 AR Q ++D F+++ Q Q ++KT ++V F + Sbjct: 241 MARTAQEFIIDILFIAITQS-SRQGRQLLEKTNSVVSDFRQSS 282 >UniRef50_C7HWK5 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HWK5_9FIRM Length = 297 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 134/281 (47%), Gaps = 4/281 (1%) Query: 16 LAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSG 75 L + K+ T+ E+ E+ LK + I +VAE S A I K K LGF G Sbjct: 17 LERIILSKKSTFTKTENFYAEYFLKLDDEILNKTISNVAEETESSTASIFKFIKKLGFKG 76 Query: 76 FRNLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 +++ + L +++ + + +++P ++ NK+ ++++ + + Sbjct: 77 YKDFQLNLATNINKNSDDSLLTAITSVNENDSPDEIANKIMAFNIQSMYTLKEDIKNIPF 136 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 ++++ +G GGS I D HKFLR D+H+ + + + + + D Sbjct: 137 ESCLNLIKKSKKIHFFGMGGSATIAYDSYHKFLRTKYMVNYISDSHMQLSACTKMDQNDC 196 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 + V +HSGRT +V ++AKKN AKII +T + S + K++D + P+ E+ + Sbjct: 197 IFVFSHSGRTLEVIEVSKVAKKNKAKIIALTGNPKSEMVKISDEAMILPSIESEHGTESL 256 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSP 292 +ARIL LT++D +S+ N+E+ M+K + Sbjct: 257 NARILYLTVMDILLISLMYDNVEENKKYMKKRLDALKVTKK 297 >UniRef50_Q28KP3 Transcriptional regulator, RpiR family n=6 Tax=Alphaproteobacteria RepID=Q28KP3_JANSC Length = 306 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 110/246 (44%), Gaps = 3/246 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + ++ + ++ + +I + +L + + ++A A S++ +VK + LGFS Sbjct: 27 SILTIMQAQLPTLSAGDRQIADTILGDPDRMARLSSGELARAAGRSQSSVVKFCQKLGFS 86 Query: 75 GFRNLRSALEDYFSQS---EQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 G+++LR A+ + + S + + K+ + + E SI + Sbjct: 87 GYQDLRLAVTRAAATQKAPNDAVHSSIEVSDDASMTAQKLLASKIHALQETLSINPAKNL 146 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 A A + L G G S+ + D +K ++G+ D+HI M ++ L DV Sbjct: 147 DAARDALNGAARVQLSGVGASSLVARDFVYKLQKLGISVLFDADSHIQMAHSATLTPDDV 206 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 ++ ++ SG + + E A K GA II +T + +P+A +AD +C+ E + Sbjct: 207 LVSLSQSGFSLETLRIAEAAAKRGATIITVTGLHPNPLADVADKALCTVTDEDQVRSSAI 266 Query: 252 SARILQ 257 ++R Q Sbjct: 267 TSRDAQ 272 >UniRef50_C9S176 Transcriptional regulator, RpiR family n=2 Tax=Geobacillus RepID=C9S176_GEOSY Length = 244 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 19/255 (7%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + +R+ + + + + +IV+++++ I+ +AEAL IV+ +K LG+ Sbjct: 1 MRFDERVRLYADRLNDTDDQIVDYIMEHREEIADIPIQKMAEALYTVPNTIVRFAKKLGY 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF L++AL L I + + +++ I Sbjct: 61 KGFAELKAALALEQRAEAAALAGG-------------------TVIEKTKELLDERLIEE 101 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A ++A+ YG G S C + +G R + H M+ +A E DVV Sbjct: 102 AVGKLHEAKHVFFYGVGDSAYFCEMMAKHLRCVGKRADFFVQRHDMLYNADRCGEKDVVF 161 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V++ SG T V AV AK+NGA +I +TH + +A LAD+ + AP+ L + + Sbjct: 162 VISASGETKQVLEAVAAAKQNGAFVISLTHFCPNSLADLADFRLYCWAPKQFLNKYDVTD 221 Query: 254 RILQLTLLDAFFVSV 268 R +L A Sbjct: 222 RTSLYLVLRALSERY 236 >UniRef50_A9WVK2 Transcriptional regulator, RpiR family n=2 Tax=Micrococcineae RepID=A9WVK2_RENSM Length = 346 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 143/292 (48%), Gaps = 6/292 (2%) Query: 9 ALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVS 68 A+ + +G+ L+ + M+ S+I +L++ +IK++A+ S A + + Sbjct: 30 AVDSAVGVVNRLKAQLPEMSGAMSKIARYLIEKPLAPLELSIKELADETGTSAATVTRFC 89 Query: 69 KLLGFSGFRNLRSALEDYFSQSE------QVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 +L+G++G+ R + +S+ + D++P+DV++ + N R++ E Sbjct: 90 RLIGYTGYAPFRVGVASDLGRSDARESWKTDIGRAFGPDDSPRDVLSTLMNAHARSLQET 149 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 +++++ + AR + D+YG GGS + ++Q++ RIG+ C + + + S Sbjct: 150 AAVLDLRLMKNLARRIALSEHVDIYGIGGSAVMAKELQNRLYRIGIPCHHCTEVYAGLTS 209 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 ASL + + ++++GRT + + A GA + ++++ +S +A+ AD+ I + Sbjct: 210 ASLQNSQCIAIGISNTGRTEETIQMLRQAGLAGATTVALSNNPNSTLAESADFQITTSVH 269 Query: 243 ETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 E L + SA+ +QL +D ++ +AQ N +A + + V Sbjct: 270 EQFLQPDDLSAKHVQLLAMDLLYLLLAQENFPRATSQLAASAMAVAPHRRPG 321 >UniRef50_B9Y4T6 Putative uncharacterized protein n=2 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4T6_9FIRM Length = 277 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 118/277 (42%), Gaps = 2/277 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 L+ Q +T+ E I ++ + + +A+ L + ++ I++ SK LG+ F Sbjct: 3 QEKLKQVQNELTQTEKIIADFFQNHSLEARSFTSYQLADRLNIGQSTIIRFSKKLGYRSF 62 Query: 77 RNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAAR 136 R L L ++ + + E+ +E K+ + I + Sbjct: 63 RELLEDLSTSLTEEK--VKEEIVVNEGTSSTNQKIIQQYQKMAQLTLEFNPPQVIDQTVS 120 Query: 137 FFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVT 196 +AR+ ++G G SN + +++L++G+ ++HI+ S DV+ +++ Sbjct: 121 ALKKARKIIVFGFGNSNLFAEYISNQWLKMGLDSFCSANSHIIFSMLSQFGPQDVLFLIS 180 Query: 197 HSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARIL 256 SG T ++ A +A +I +T + + +D ++ + ET + R Sbjct: 181 ESGETPEILKAARIAGHQNVTVIAMTRIQKNRLHGYSDIVLKTVNYETNTRLNAMTLRCS 240 Query: 257 QLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPG 293 QL LLD ++++ + + E + ++ ++D+ G Sbjct: 241 QLCLLDMIYLNLYKTDFEHYEKIIAESEKLLDYKYNG 277 >UniRef50_A3DDB2 Transcriptional regulator, RpiR family n=5 Tax=Clostridiales RepID=A3DDB2_CLOTH Length = 299 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 109/286 (38%), Gaps = 8/286 (2%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 + L ++ G ++ + I +++ + + + E + VSE+ +V+ + Sbjct: 3 MDKEQDLLKRIQAGMPGFSKGQKLIANFIINHYDKAAYMTAAKLGEEVGVSESTVVRFAN 62 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQD--VVNKVFNITLRTIMEGQSIVN 127 +GF G+ L+ L + + + ++ V + I ++ Sbjct: 63 EIGFDGYPKLQKVLREMNKSKLTAVQRIEVTSSRINEGNILKSVLQSDMEKIKATLEEID 122 Query: 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRI--GVRCQAYPDAHIMMMSASL 185 + + + AR+ + G S + + + F I VR M Sbjct: 123 QESFNNIVKSILNARKIYILGVRSSAPLASFLGFYFNLIFDNVRLVHTTSVSEMFEQIIH 182 Query: 186 LQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETP 245 GDVV+ ++ + A+ A+ GA ++ IT S +SP+AK AD++I + + Sbjct: 183 ASRGDVVIGISFPRYSKRTINAMRFAQNQGATVVAITDSLYSPLAKNADHVITARSD--- 239 Query: 246 LLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + + + L++++A V++ ++ I D + Sbjct: 240 -MASFVDSLVAPLSVINALIVAIGMSRKPHVQETFERLEKIWDEYK 284 >UniRef50_D1TJG3 Putative transcriptional regulator, RpiR family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJG3_9BURK Length = 325 Score = 227 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 130/288 (45%), Gaps = 3/288 (1%) Query: 8 SALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKV 67 SA P + + + E ++ +L + +I +A+ VS A + + Sbjct: 33 SAEPLAFDIVARIAECAPELRSAERKVAALILDDLTGASRASIGALAQQAEVSIATVTRF 92 Query: 68 SKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVN 127 +K +G R L+ L + ++ L + A +AP+ + +VF+ + ++ Sbjct: 93 AKAVGCRDVRELKLRLAQAAAVGQRFLERD-AASDAPEPIATRVFDELQTALAHNHQLLR 151 Query: 128 VDEIHRAARFFYQARQRDLYGA-GGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + AA AR ++G GGS A+ +++ + +R+G Y D + M AS + Sbjct: 152 QAPLAEAAAALRNARMIYVFGMGGGSTALADEMRFRLVRLGRPVATYQDGLLQRMVASTV 211 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 VV+ ++ +GR ++ ++A+ GA ++ +T SP+A+LAD++I A ET Sbjct: 212 SRDCVVVALSTTGRVPEMVENCKIARSYGATVVAVTA-PASPLARLADWLIPIVAFETDF 270 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGA 294 + + +S+R + LD +A +++ +++ +D G Sbjct: 271 IYKPSSSRYAMMMALDVLVTELAVSQGDESRELLRRMKHALDAHRGGG 318 >UniRef50_D2BPE4 Transcriptional regulator, RpiR family n=1 Tax=Lactococcus lactis subsp. lactis KF147 RepID=D2BPE4_LACLK Length = 273 Score = 227 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 123/276 (44%), Gaps = 6/276 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + +++ + E+E +I E++LK I +A VSEA I + K L Sbjct: 1 MNILDQIQVNFQNFFESEKKIAEFILKNPKKVIDMPIALLARNSNVSEASISRFCKKLNL 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +GF L+ L + ++ + + +++ + I ++ +++D + Sbjct: 61 TGFHQLKIELAR----IQDNENIKVNKNTSLNELIKNISKIKTTELIAATDNLDIDNLQS 116 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + + +G + + D ++F ++G+ + D + +++ D+++ Sbjct: 117 IIKIITNVKLTHFVASGNTIPVAEDASYRFNQLGITSVVFDDWQVQTAFTLNMRKEDLLI 176 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V+++SG + + + +AK+ II IT+ SPIA+L+++ + S + + + Sbjct: 177 VISNSGESKSLIKLINIAKEKKIPIISITNHPDSPIARLSNFHLTSFSRDYFFHNDYYFS 236 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 R+ + L++ F+ ++Q + N++ I+ Sbjct: 237 RLSAMYLIELIFLILSQD--KSRLENIKLHEQIISE 270 >UniRef50_C0D858 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D858_9CLOT Length = 275 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 125/262 (47%), Gaps = 2/262 (0%) Query: 10 LPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSK 69 +P LR + E R E+LL I +A+ VSEA +V+V Sbjct: 3 VPRTPSWQIKLRGVIGSLGAQERRFAEYLLNSFAGIEKEPIAVLAKEAQVSEATVVRVCH 62 Query: 70 LLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 +G+SG + L+ + +++ + + ++ +VF +R + + ++++ D Sbjct: 63 KMGYSGLKELKIVVARE-NETAGSFDGGIG-GQYMDELKERVFMGAIRALQDTMNLIDED 120 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 E+ +A + A +YG GGS + ++H+ +++G+ Y + +++A +G Sbjct: 121 EVEKATKVLCNANYISIYGVGGSVPVARSLKHQLMKLGIPSNVYNEFQPTIIAAEKYNKG 180 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 DV + ++HSG +S V A+ +A+ GA ICIT S I +D + + G Sbjct: 181 DVAIGISHSGESSQVVEALRIARGKGATTICITSYGDSAITHCSDVKFFTTSETLLNGGD 240 Query: 250 NASARILQLTLLDAFFVSVAQL 271 N+ ARI Q ++++ +++VA Sbjct: 241 NSLARIAQTSIINLLYLNVALK 262 >UniRef50_C6VMT8 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VMT8_LACPJ Length = 282 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 119/281 (42%), Gaps = 8/281 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL-- 71 + + + E ++ E +I ++L N + ++A A VS A + + K L Sbjct: 2 TSVLFTIHNRLENFSKAEQKIGRYILDHTNAVIKMSTAELAAATGVSTATVARFGKTLIP 61 Query: 72 -GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDE 130 G G+ L+ L S +Q L E+ ++ + +K+ TI E ++ Sbjct: 62 DG--GYPALKLRLSAE-STVDQTLYDEINPKDSLDAIKSKLALRITHTIDETNRSLDDAA 118 Query: 131 IHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGD 190 + A++ +YG G SN + D + KF+RIG D H++ + + ++ Sbjct: 119 LQAASQLIADKASVYVYGLGASNVVATDFEQKFIRIGKAVIHSQDPHLLAVGMTTQRQNV 178 Query: 191 VVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPE--TPLLG 248 V+L++++SG S+ LA +I ++ + S + KLAD I+ + E Sbjct: 179 VLLLISNSGEKSESIRLANLAHSINVPVIVLSRNATSTLGKLADIILINDDSEENQTARA 238 Query: 249 RNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 ++ + QL ++D + + + E+ + + + Sbjct: 239 AATTSLMAQLYVVDLLYYTFITNDYERHIKQLVASREAIKE 279 >UniRef50_Q38V38 Putative transcriptional regulator with a sugarisomerase domain, RpiR family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38V38_LACSS Length = 276 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 126/278 (45%), Gaps = 5/278 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + +++ + ++ E ++ +++ G I ++A L VS + I + + +G Sbjct: 1 MAIIEHIKQQYSFLSPQEQKVALAVIQKGASIQRIGIDELAAELQVSNSTISRFVRKIGC 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 F + + + + + ++ + +++ I + Q+ + ++ + Sbjct: 61 QNFVDFKLQFSEGPQPTMTGVQGQVDHESQTSV---EIYQFYQDVITKTQARIKQADLDQ 117 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + ++Q +YG G S A+ + R+G++ ++H+M+M++ ++ + D+V+ Sbjct: 118 LVSWIKTSQQLFIYGLGSSGYTGAEFGQRLTRMGIQATVVTESHMMLMTSRIINKTDLVI 177 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 +++SG T +V AV+ A++NGAK IT SP+A +D + R ++ Sbjct: 178 GLSNSGNTEEVNQAVQNARENGAKTAAITSGTDSPLAAASDLTLFVEDSIGFASARFVNS 237 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + ++D + + + EQ N M++T + Sbjct: 238 QFALTYVIDILAMLLLED--EQYNWRMKQTVDTIMHHK 273 >UniRef50_Q03FC5 Transcriptional regulator n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FC5_PEDPA Length = 280 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 115/277 (41%), Gaps = 5/277 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + L E + +E ++ +++ +++++ VS A +V+++K + S Sbjct: 3 NILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKICKS 62 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G L+ + + L +E+ + + +K+ I + I+ +++ +A Sbjct: 63 GLPGLKIQVASEIKV-DDSLYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKKA 121 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 QA ++G G SN + D Q KF+RIG D H +M+ L + V++V Sbjct: 122 TDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQTLDTH--LMAVGLAKPNSVLIV 179 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA--PETPLLGRNAS 252 V+ SG T + +A II ITH +S IAK + + L + Sbjct: 180 VSDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATT 239 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDF 289 + + QL ++D + + + + K+ I+ Sbjct: 240 SLLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAE 276 >UniRef50_B5GNW3 RpiR-family transcriptional regulator n=14 Tax=Streptomyces RepID=B5GNW3_STRCL Length = 354 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 136/279 (48%), Gaps = 5/279 (1%) Query: 18 PYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFR 77 +R MT + R+ E + A + +AE SEA +V+ ++LLG+ G+R Sbjct: 70 SKVRTLVPSMTRSMQRVAEAVADDPAGCAALTVTGLAERTGTSEATVVRTARLLGYPGYR 129 Query: 78 NLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 +LR AL + + + ++++ D+ DVV K+ +T+ + + ++ + Sbjct: 130 DLRLALAGLAAHQQSGRSPSVTADISVDDPLPDVVAKLARDEQQTLADTAATLDTAALAA 189 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A AR+ D+YG G S+ + D+ K LRIG+ A+ D H+ + +A L+ GDV + Sbjct: 190 AVSAAATARRIDIYGVGASSLVGLDLAQKLLRIGLIAHAHTDPHLAVTNAVQLRTGDVAV 249 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP-APETPLLGRNAS 252 +THSG T DV + A + GA I IT P+ + AD+++ + + E+ L S Sbjct: 250 AITHSGSTGDVIEPLRAAFERGATTIAITGRADGPVTQYADHVLTTSTSRESELRPAAMS 309 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 +R QL ++D F+ VAQ A + + + Sbjct: 310 SRTGQLLVVDCLFIGVAQRTYASAAPALAASYEALAHRH 348 >UniRef50_D2ELR8 Transcription regulator n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELR8_PEDAC Length = 280 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 122/276 (44%), Gaps = 5/276 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + L+ + T+ E ++ +++K K VA+ + S A +++++K + + Sbjct: 5 SVVFTLKNQLGDFTKKEKQVARFIIKYPQAVIDSNAKQVADQVGTSAATVIRLAKRVCKN 64 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G L+ L++ +++ E+ + + + K+ TI + V + A Sbjct: 65 GLPELKERLKNETMVNDKFF-EEIDPADTLEVMKQKMEYRINHTIEQTNRTVKGGAVRNA 123 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 A+ QA YG G S+ + D+Q KF R+G D H +++A + + VV++ Sbjct: 124 AKLVDQADVVYTYGIGASHLVADDLQQKFGRLGKPVAQTQDVH--LLAAEMSKGRGVVVL 181 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPA--PETPLLGRNAS 252 +++SG T + + A+ ++ IT SP+A+ + ++ L + Sbjct: 182 ISNSGETKETLQLLGAARALDLPVVAITRVLSSPLARQSTVVLAHSDSGEGNQLRSAATT 241 Query: 253 ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 + + QL ++D + S +L+ E + K+ I+ Sbjct: 242 SLMAQLYVVDLLYYSFLKLHFEDNVDQLTKSRKIIK 277 >UniRef50_C6JFN2 Transcriptional regulator n=3 Tax=Clostridiales RepID=C6JFN2_9FIRM Length = 275 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 117/279 (41%), Gaps = 10/279 (3%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 N + P + T E I ++ + + K+++ L VSEA + + ++ Sbjct: 4 NKHKIIPLIESYYHTFTPLERTIADFFIHNTEE-QDFSSKNISGLLYVSEASLSRFAQKC 62 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 GF G+R + + + E FN + + ++++ +I Sbjct: 63 GFHGYREFIYEYKQSLAPGPEENIPNFEVSE---------FNTYQELLNKSNALLDKAQI 113 Query: 132 HRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDV 191 R + +YG G S + +++ +F+RIG+ +A D+HIM +++ +L E + Sbjct: 114 TRITNLLVSKPRVYVYGRGSSGLVAQEMKLRFMRIGLNIEAVTDSHIMKVNSVILDENCL 173 Query: 192 VLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNA 251 V+ ++ SG+T D+ ++++ A ++GA + +T D + + E G Sbjct: 174 VIGISVSGQTDDIISSLKAAHQHGAYTLLMTARQDKSYQDFCDETLIFASMEHLEYGNII 233 Query: 252 SARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 S + L +LD + Q++ + + T + F Sbjct: 234 SPQFPILLVLDVLYAHYLQIDRSKKEALHEYTIQTLQPF 272 >UniRef50_C9A459 Phosphosugar isomerase transcriptional regulator n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A459_ENTGA Length = 268 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 105/262 (40%), Gaps = 4/262 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + + + ++ + ++ +++++ + +A S A +++ SK LGF Sbjct: 1 MSVVTTIESIKNELSTTDLKLADYIVENLDEIPTMTSNVLAVHSNTSPAAVIRFSKKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 S F + + AL S++ D++ Q NK+ I I++ + + Sbjct: 61 SKFSDFKLALTKDIENRIYNEYSDIQNDDSFQTAKNKILRNNKMIIDATDPILDEQTVQQ 120 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + A++ +YG G S D++ K+ RIG D +++ + Sbjct: 121 VVDKMFHAKRIYVYGVGTSVLAAEDIRQKWTRIGKTVIFDKDRYLLTQQMKNDGADSLFW 180 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET----PLLGR 249 ++HSG+ DV + VE+AK G + ++ + + K D I + E Sbjct: 181 GISHSGKNRDVLSLVEIAKSLGMPTLGMSQLGQNQLTKKVDTPIHTARTEDIKNGHYGSG 240 Query: 250 NASARILQLTLLDAFFVSVAQL 271 + ILQ+ +D F + Sbjct: 241 ATHSIILQIVTIDLLFYFYMRR 262 >UniRef50_C9XPJ9 RpiR-family transcriptional regulator n=5 Tax=Clostridium difficile RepID=C9XPJ9_CLODC Length = 250 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 64/258 (24%), Positives = 125/258 (48%), Gaps = 11/258 (4%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L L + Q+ ++ NE ++ + LK IKD+A S A IV+ + LGF Sbjct: 1 MNLIDKLDINQKKLSTNEISLLNYFLKNSEKINQKKIKDIANETFNSTAYIVRFCQKLGF 60 Query: 74 SGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 SG+ ++ L +S + F ++ D+ V + Q+++NV+ I Sbjct: 61 SGYSEFKNFLVFSYSNRNE---RNKEFTKSQSDIFTDVM--------DTQNLINVENIDM 109 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 + ++ +G G S +C ++ +F IGV + Y D+ +M ++AS + + D+V+ Sbjct: 110 CLNEIHNSKHIYFFGVGSSRLVCTEMSQRFSAIGVNVKYYDDSTLMYLAASNITKDDLVI 169 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V+ SG T+ V A +AK N K+I +T+ + ++ +AD + +P+ N ++ Sbjct: 170 AVSMSGETAQVIKACNIAKTNQVKVISLTNISVNSLSNIADIKLFVSSPQYNFNSVNYTS 229 Query: 254 RILQLTLLDAFFVSVAQL 271 R+ L+L++ F + Sbjct: 230 RVPALSLMEYMFHKYIEK 247 >UniRef50_A4E6N7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6N7_9ACTN Length = 301 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 125/287 (43%), Gaps = 3/287 (1%) Query: 3 QSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEA 62 ++ S + + Q G +E+E RIV+++L+ + + ++ A A SEA Sbjct: 11 ANQEPSMTDSSKSALSLISTHQ-GYSESEQRIVDYILEHQSEAPRLTAAQLSRAAATSEA 69 Query: 63 MIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEG 122 + + + LGF FR+ + +L ++ + + + + + + Sbjct: 70 TVSRFCRKLGFGSFRSFQFSLARDLESQRNEGLTDEVSLDNMEQSLKNILAAKVSELNAT 129 Query: 123 QSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMS 182 ++ D + A + G +NA+ D KF ++G+RC A + + Sbjct: 130 IDGIDHDTLAAVVHALKHAGVIEFAAVGNTNAVALDATFKFSQLGLRCMASTISETSIGF 189 Query: 183 ASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAP 242 A L+ GDV++++++SG++ + + A+ GA ++ I+ SP+A+LADY + Sbjct: 190 ALTLRPGDVIVLISNSGKSRRLNRMAKAARNCGATVVVISSDSKSPLARLADYTFNTVNH 249 Query: 243 ETPLLGRNAS-ARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVD 288 E L + + ++I +++ + + + A ++ ++ Sbjct: 250 EALLTTGDFAFSKISATMIIEVIYNFLLPEIKD-AREHISYYEELIQ 295 >UniRef50_C2LK66 Phosphosugar-binding transcriptional regulator n=4 Tax=Enterobacteriaceae RepID=C2LK66_PROMI Length = 283 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 3/261 (1%) Query: 30 NESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQ 89 E R+ +LL+ + + ++A+ VS A +++ S+ +G+ G+ + Q Sbjct: 18 TEQRLAHYLLENSDNIASMNAAELAQKAGVSSASVIRFSRQMGYGGYPEFKIDYLSEEKQ 77 Query: 90 SEQV---LPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDL 146 + L + LA ++ + ++ K ++ I + ++++ I A A++ L Sbjct: 78 QKSSSDILYANLAKTDSTEQIIAKTGHLFTTAIQDSIALLDAATIDLLAEKMISAKRIVL 137 Query: 147 YGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKA 206 +G G S + +D+ HK +R+ D H + ++ L D+ + VT G T+D+ Sbjct: 138 FGVGASAIVASDIFHKLIRVNKNTLFSADLHAQLAYSANLSADDLAIAVTARGNTADINR 197 Query: 207 AVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFV 266 ++ AK+ G + +T +LA+Y + E + ++LQ+ D F Sbjct: 198 MLKAAKQEGCITVALTRFGQDEATRLANYTLPYFYDEQHSQLGVITPQVLQMVAFDVLFF 257 Query: 267 SVAQLNIEQANINMQKTGAIV 287 L A + K V Sbjct: 258 KYMTLAKGSAEKALLKGRQAV 278 >UniRef50_A8RCR9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCR9_9FIRM Length = 289 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 132/283 (46%), Gaps = 5/283 (1%) Query: 13 GIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLG 72 + + ++++E ++ ++L + +++A +SE +++ ++ LG Sbjct: 3 NNEILTRIESLMPFLSKSEQKLGNYILTHPKDVTDMSTSALSQACDISEPTLIRFTRRLG 62 Query: 73 FSGFRNLRSALEDY-FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEI 131 F G+++ + L S P ++ +++ ++ K+ + T+ ++ + ++ +++ Sbjct: 63 FQGYKDFKLHLSANFISNQIDSTPVKVNLNDSAIEIYRKLASFTINSLNSTLNTLDANDL 122 Query: 132 HRAARFFYQA----RQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQ 187 A + Y A R+ L G G S + + Q K +R+ ++ + D H+ + + + L+ Sbjct: 123 ENATNYIYVAAKQNRKIFLSGMGASTVLIHEFQIKMMRLNIQTIFFEDIHLRLEACANLK 182 Query: 188 EGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLL 247 + D+ + T G + + +++A + AKII IT +S IA+ AD + + E L Sbjct: 183 KNDLFICFTTLGASKENYELIDIAHERKAKIIVITQFGNSQIAEKADIALYTSIIENNLR 242 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFF 290 + ++ ILQ ++D F+++A + +++ Sbjct: 243 LASQTSIILQSMVIDVLFLTIACKDYASITNSVKDFREKFKQL 285 >UniRef50_D1AYR1 Transcriptional regulator, RpiR family n=2 Tax=Fusobacteriaceae RepID=D1AYR1_STRM9 Length = 281 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 130/275 (47%), Gaps = 5/275 (1%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + + LR T +E I ++L+ + +A+ S + + + K +G Sbjct: 1 MSILVKLREN-NDFTSSEKDIAKFLMNNYKNIKKIDARKIAKETFTSVSAVTRTCKKIGL 59 Query: 74 SGFRNLRSALEDYFSQSEQ----VLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVD 129 GF+ + L + + EQ + S++ + + ++ K+ +++ ++ E + + + D Sbjct: 60 RGFQEFKIDLIEELANLEQQKLEFVNSDIERNNDTRMIIEKLNKLSISSLKETKLLQDPD 119 Query: 130 EIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEG 189 I + + + + D YG G S+ +C D Q+KF+RIG C A+ + + A + Sbjct: 120 IIDKVVKLIKKKKVIDFYGIGASHIVCLDAQYKFMRIGKVCNAFGPFDLQYIQAVNSTDD 179 Query: 190 DVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGR 249 ++ +++++SG T D+ E+ + G + + IT + +A A++ + + E+ Sbjct: 180 NLAIIISYSGMTEDIIKISEVLRNKGIETVSITMYGSNKVASNANHNLYVTSKESLKRSA 239 Query: 250 NASARILQLTLLDAFFVSVAQLNIEQANINMQKTG 284 +RI L L+D ++ + +N ++ ++ + +T Sbjct: 240 AIYSRISMLNLIDVIYLKYSNMNFDEVSVKINETQ 274 >UniRef50_C2KAY2 Transcriptional regulator n=6 Tax=Lactobacillus RepID=C2KAY2_9LACO Length = 281 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 123/278 (44%), Gaps = 1/278 (0%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 LA + + + I + K + ++++ S A +V+ + LGF Sbjct: 3 NLANKISDVYPNLNKTSKLIADVYFKEPRIFLNKNLQELGTITQTSGASVVRFCRNLGFK 62 Query: 75 GFRNLRSALEDYF-SQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 GF++ + A ++ + ++ + + ++ P V+ K+ + I + ++ + Sbjct: 63 GFKDFQIACAQEMPNKQDAMVDTIINTNDEPTSVLYKLQLSLGKNIADIGKTIDHKSLDA 122 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 A A+Q + G G S D+ +K +R G +HI + + + + D+++ Sbjct: 123 AVDLMRSAQQIYVAGEGASGLAAQDLFYKLIRSGKNVNFVQSSHIALEQVANINKEDILI 182 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V ++SG T + + A+KN AKI+ +T SP+ +AD +I P+ E L ++ Sbjct: 183 VFSYSGLTQEPLLMAKQAQKNNAKIVAVTRIQDSPLKNMADTVITLPSNEKLLRYGAINS 242 Query: 254 RILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 ++ ++S+ N+E+ N+ M+ T + + Sbjct: 243 LFAEIFASSLLYLSLISPNLEELNMKMKTTQNLTNQLK 280 >UniRef50_B9E8A7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8A7_MACCJ Length = 285 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 123/279 (44%), Gaps = 4/279 (1%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + + + T E RI + +++ IK++A SEA IV+ SK LG S Sbjct: 3 SVLGQITKMYDSFTPVEKRIADVVIEYPEKVVNLPIKEIAHLSNTSEAAIVRFSKRLGLS 62 Query: 75 GFRNLRSALEDYFSQ-SEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHR 133 G + ++ L +++ +P+++ + + + KVFN T++ + + +++ I Sbjct: 63 GIKVVKVELARELHTIADKKVPTKIELTDDEEVMKEKVFNNTIQALYNTEKVISAKVIDE 122 Query: 134 AARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL 193 AA+ A++ ++G G S + D+ K + I D + + GDV+ Sbjct: 123 AAQAITSAKRVMIFGVGNSRVVATDLHVKLMNIDQSAILATDLLSAITLLGHYEAGDVLF 182 Query: 194 VVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASA 253 V + + + + + AK+ G KII +T + SP ++AD ++ E + + Sbjct: 183 VTSETSKNKVITDICKYAKEKGIKIILLTQKFSSPAIRMADIVLAMAKEENEINLGYMTV 242 Query: 254 RILQLTLLDAFFVSVAQLNIE---QANINMQKTGAIVDF 289 R QLT++D ++ V + N+ +T I Sbjct: 243 RTAQLTIVDVLYLRVCAYLKDTVLSNMQNLNETRKITHE 281 >UniRef50_C3WAG5 Transcriptional regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAG5_FUSMR Length = 283 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 120/276 (43%), Gaps = 1/276 (0%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGF 76 L + E +I ++L+ I+D++E + S A I + +K +GF F Sbjct: 7 LFLLDQLLPSFSPAEQKIALFILENTFAVIDMTIEDMSEKIGTSVASISRFTKKIGFENF 66 Query: 77 RNLRSALEDY-FSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAA 135 L+ + + S + + + + D+ V + E N D++ + Sbjct: 67 YLLKLGIAKEFVNSSNKTISLNVNKNSNATDIYTNVAKTNSAILEESIEYFNTDKMEEIS 126 Query: 136 RFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVV 195 A L+ G S + + +KF+R+G++C D H ++ AS+L + DV L+ Sbjct: 127 EIILNANHIYLFAMGASGILAKESWYKFIRLGLKCSMIEDFHSQLLQASILDDTDVALIF 186 Query: 196 THSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARI 255 +HSG DV +E+ + A I IT+ +P ++ D + TP+ S+RI Sbjct: 187 SHSGINKDVLTLLEIINETPAYSIGITNYARTPFSQSVDICLFFSENSTPMDKVGFSSRI 246 Query: 256 LQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 QL ++++ + ++ +++ I ++ I S Sbjct: 247 PQLIIIESLYRILSLKLGKKSKICQERYKQIFKKRS 282 >UniRef50_Q1J381 Transcriptional regulator, RpiR family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J381_DEIGD Length = 286 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 8/259 (3%) Query: 5 EFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMI 64 A L ++ + RI +++ I ++A V E+ + Sbjct: 8 PERRASARPPSALARLHAERAQLPPTLERIAAYVVAHPEEVIYQTITELAATAGVVESAV 67 Query: 65 VKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQS 124 ++ + LGFSGF + AL SQ++ + F A ++ I + Sbjct: 68 TRLCRRLGFSGFHAFKIALSGDVSQAQGAAEATDPFSVA--------ARQAVQAIEGTRQ 119 Query: 125 IVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSAS 184 + + + R A+ A + D+ G S + +K R+GV AY D H+ ++A+ Sbjct: 120 VADPAALERVAQAIAAATRVDVVGQSNSGLSAQFLANKLARVGVPAFAYTDPHLAAVAAA 179 Query: 185 LLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPET 244 VV+ T SG T D + LA GA + +TH SP+ + A ++ + +PE+ Sbjct: 180 TQSPRGVVVGFTRSGSTIDTVQTLRLAASKGACTVAVTHRASSPVTRYAREVLATSSPES 239 Query: 245 PLLGRNASARILQLTLLDA 263 PL G S+ + Q+ L++A Sbjct: 240 PLAGGALSSLVSQVLLVEA 258 >UniRef50_A6UGP6 Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UGP6_SINMW Length = 284 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 141/287 (49%), Gaps = 8/287 (2%) Query: 1 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS 60 M+ ++P LR +++ E R+ W+LK +LS ++ +A+A VS Sbjct: 1 MTVDLRGPSVPAS----SRLRSVLPKLSDAERRVALWMLKNVDLSIRQSMSAIAQATDVS 56 Query: 61 EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM 120 + ++++ + GF GF +L+ AL E + S + + ++F + + Sbjct: 57 DTTVLRMCRTAGFEGFTDLKLALAQE--PREAIEHSSGEPEASALQAAGRLFRAITQALN 114 Query: 121 EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM 180 + +++ +A A+ + G GGS + + +R+G+RC A D+ + + Sbjct: 115 DTFGVLDEATFAKALDLVANAKHIMVGGVGGSGIVAQAFYQRCIRLGLRCDAPIDSQLQI 174 Query: 181 MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP 240 M A+L GD+V+ +++SG TSD ++ AK GA +CIT + S +A+LAD ++ S Sbjct: 175 MHAALTGPGDLVVAISYSGITSDPVLVLQEAKARGASTLCITGNSSSALARLADVVLVSV 234 Query: 241 APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 + E +A+I Q+TL+DA + ++ N E A + ++ + Sbjct: 235 SHEQ--GSEPMAAQIAQMTLVDALYAALVARNPEPAQLTEERMVNAI 279 >UniRef50_B1QVU2 Transcriptional regulator, RpiR family n=9 Tax=Clostridiales RepID=B1QVU2_CLOBU Length = 275 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 116/273 (42%), Gaps = 10/273 (3%) Query: 15 GLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFS 74 + P + E T E I + + + K++++ L VSEA + + SK GF Sbjct: 7 TIIPKIESLYENFTPLEKTIANFFIHNTEKI-DFSSKNISKKLFVSEAALSRFSKKCGFK 65 Query: 75 GFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 G+R E F + + + +V + + + ++++ +++ R Sbjct: 66 GYREFIFLYEQNFVEKPSNVTTNYT---------KQVLDTYQELLNKSYALLDEEQMVRI 116 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + F Q ++ +YG G S +++ +F+RIGV ++ D+HIM M+ LL +V+ Sbjct: 117 TKLFNQKKRVYVYGRGSSALAAQEIKLRFMRIGVNIESIVDSHIMKMNFVLLNSDCLVIG 176 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 ++ SG+T +V ++ AK A + IT + D II E G+ S + Sbjct: 177 ISVSGKTDEVLDSLRAAKSRNATTVLITSRKEKEFEEFCDEIILLAVKEHLDNGKAISPQ 236 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIV 287 L ++D F+ Q + T + Sbjct: 237 FPILVMVDIFYAHFLQSDKFHKQELHDYTLNAL 269 >UniRef50_C8QBF9 Transcriptional regulator, RpiR family n=1 Tax=Pantoea sp. At-9b RepID=C8QBF9_9ENTR Length = 297 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 144/285 (50%), Gaps = 5/285 (1%) Query: 12 NGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLL 71 G + R + E I ++ + +I D+A+ L VS A I KV+K L Sbjct: 10 KGNEIFLLARTLAPELGRKERSIARFIDDNPETLASMSITDIADYLDVSVASITKVAKKL 69 Query: 72 GFSGFRNLRSALEDYFSQSEQVLPSELAFDEA--PQDVVNKVFNITLRTIMEGQSIVNVD 129 GF+GF +L+ + + + SE+++ + +V ++ + + +++ Sbjct: 70 GFTGFHDLKMNIGKHITVSEELIDVPPVSGGEFYTEKIVESTLYNSILALQDALKAIDIA 129 Query: 130 EIHRAARF-FYQAR--QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLL 186 + A +++ + + G GGS +IC D HK L+IG+ + D+H +M+ASL+ Sbjct: 130 VVKSVAALFIHRSENARIVIAGCGGSGSICEDFNHKLLKIGIFSSVFSDSHKQLMTASLM 189 Query: 187 QEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL 246 + GD++L V+HSG+T+D+ ++A GA+ IC+T+ +SP++ ++ + I S P+ Sbjct: 190 RPGDILLTVSHSGQTTDIINMTKMANDKGAETICLTNYPNSPLSHISRHAIISSVKNNPI 249 Query: 247 LGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 G NA+ RI+ L +LDA F +A E + ++ T V Sbjct: 250 TGENATTRIVHLNILDAIFTIIASKTSEFSQESLHNTRNAVASKR 294 >UniRef50_C0C5Q9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Q9_9CLOT Length = 287 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 130/277 (46%), Gaps = 3/277 (1%) Query: 17 APYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAV-SEAMIVKVSKLLGFSG 75 + +T+ + ++ +++LK + +I D+ ++ SEA +VK +LLGF G Sbjct: 11 LAKISELYPQLTKGQKQLADYILKNPSEVVNKSITDLISHTSLKSEASVVKFYRLLGFDG 70 Query: 76 FRNLRSALEDYFSQSE-QVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRA 134 F++ + L S++ D+ P ++ KVF + ++ + I + + A Sbjct: 71 FKSFKIKLAQELVNRTFYHSESDITIDDEPTEIKKKVFLGAMSSLSKNADIAAGECMD-A 129 Query: 135 ARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLV 194 + A++ + G G S +IC + +G+ C DAH+ + + GDV+L Sbjct: 130 QKLLSSAKRIIILGHGASASICQYAFFRLTELGLNCVCNQDAHMNAAILTHPRPGDVILC 189 Query: 195 VTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASAR 254 V+ SG T+D+ +E+A + I IT + S IA+L+ I+ + + E +L ++R Sbjct: 190 VSQSGETADLYKQIEMAYQRRIPAILITGAPGSSIARLSQVILSTVSEERNILTDALNSR 249 Query: 255 ILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFS 291 + Q L+DA F ++ N + +Q T + Sbjct: 250 VSQFCLIDALFSMISIANANEMLPRLQDTRNTFKKYK 286 >UniRef50_C8P0W4 RpiR family phosphosugar-binding transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0W4_ERYRH Length = 285 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 116/275 (42%), Gaps = 7/275 (2%) Query: 14 IGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGF 73 + L ++ +++ ES+I +++L+ L I +++E S + I + + + Sbjct: 1 MLLINRIK-NSTQLSDTESKIAQYILENPQLVTQLTIHELSEITYASASTITRFCRKMKT 59 Query: 74 SGFRNLRSALEDYFS-----QSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNV 128 GF + + L S ++ + ++V + ++ +++ + + +++ Sbjct: 60 EGFSDFKVKLAGELSSFSITENRIRDDVPFQSNHTSTEIVQSILSLNYQSMSDTYNNIDL 119 Query: 129 DEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQE 188 +++ R A Y A LYG+G S + D Q+K RI + C + A+ Sbjct: 120 EQLERIAHKIYYAPHIYLYGSGQSLILAQDFQYKLFRIELDCNLETSLGFQSLKANTQPL 179 Query: 189 GDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPL-L 247 + L++++ G+ K V+ + I IT ++P+ A ++ E + Sbjct: 180 DSIALIISYYGQNEHNKTIVDSLVERNIPYILITGPLNNPLCTHASEVVHVSPQEELVTK 239 Query: 248 GRNASARILQLTLLDAFFVSVAQLNIEQANINMQK 282 + S+R +LD + + ++ E+ ++K Sbjct: 240 MASFSSRTSMQLVLDFIYALIFAIDYEKNQKIIEK 274 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.179 0.498 Lambda K H 0.267 0.0549 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,035,239,272 Number of Sequences: 3077464 Number of extensions: 104573630 Number of successful extensions: 397906 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3574 Number of HSP's successfully gapped in prelim test: 792 Number of HSP's that attempted gapping in prelim test: 389601 Number of HSP's gapped (non-prelim): 4989 length of query: 296 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 168 effective length of database: 646,480,964 effective search space: 108608801952 effective search space used: 108608801952 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 93 (40.0 bits)