15/01/2012 21:43:14 : INFO  : Run start: Sun Jan 15 21:43:14 GMT 2012
15/01/2012 21:43:15 : INFO  : Initialised job
15/01/2012 21:43:15 : INFO  : Renaming log file 'phyre2_20120115_214314.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a48cec17214f211b/phyre_20120115_214314.log'
15/01/2012 21:43:15 : INFO  : Initialised job:
Sequence
>batch____
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA
QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA
GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK
GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVA
LDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML
PAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASF
SRKGAV

15/01/2012 21:43:15 : INFO  : Checked sequence
15/01/2012 21:43:15 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 21:43:15 : INFO  : PSI-BLAST 3 iterations
15/01/2012 21:45:33 : INFO  : PSI-BLAST 5 iterations
15/01/2012 21:47:51 : INFO  : Finished PSI-BLAST
15/01/2012 21:47:51 : INFO  : Running Buildali to generate a3m file
15/01/2012 21:55:55 : INFO  : Converting to HMM
15/01/2012 21:55:56 : INFO  : Calibrating HMM
15/01/2012 21:56:05 : INFO  : Searching HMM database
15/01/2012 22:02:39 : INFO  : Finished buildali
15/01/2012 22:02:39 : INFO  : Predicting secondary structure
15/01/2012 22:02:39 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 22:02:39 : INFO  : Predicting Disordered regions
15/01/2012 22:02:40 : INFO  : Predicted Disorder (Disopred)
15/01/2012 22:02:40 : INFO  : Running memsat_svm check
15/01/2012 22:06:04 : INFO  : Running memsat_svm full
15/01/2012 22:11:13 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a48cec17214f211b'
15/01/2012 22:11:13 : INFO  : Initialising fold library search
15/01/2012 22:11:13 : INFO  : Initialised search input
15/01/2012 22:11:13 : INFO  : Building Ensemble models
15/01/2012 22:11:13 : INFO  : Building hh.c2kncA_.model.1.pdb
15/01/2012 22:11:13 : INFO  : Building c2kncA_.1.pdb
15/01/2012 22:11:13 : INFO  : Building c2rdcA_.2.pdb
15/01/2012 22:11:14 : INFO  : Building c2l9uA_.3.pdb
15/01/2012 22:11:14 : INFO  : Building c2voyH_.4.pdb
15/01/2012 22:11:14 : INFO  : Building d1f5qb1.5.pdb
15/01/2012 22:11:15 : INFO  : Building c1mhsA_.6.pdb
15/01/2012 22:11:15 : INFO  : Building c2bbjB_.7.pdb
15/01/2012 22:11:16 : INFO  : Building c2zxeA_.8.pdb
15/01/2012 22:11:17 : INFO  : Building d1rutx1.9.pdb
15/01/2012 22:11:17 : INFO  : Building d1oeda_.10.pdb
15/01/2012 22:11:17 : INFO  : Building c2kr6A_.11.pdb
15/01/2012 22:11:18 : INFO  : Building c3my2A_.12.pdb
15/01/2012 22:11:18 : INFO  : Building d1g3nc1.13.pdb
15/01/2012 22:11:19 : INFO  : Building d1gjwa1.14.pdb
15/01/2012 22:11:19 : INFO  : Building d1bu2a1.15.pdb
15/01/2012 22:11:19 : INFO  : Building c1jowA_.16.pdb
15/01/2012 22:11:20 : INFO  : Building d1j2oa1.17.pdb
15/01/2012 22:11:20 : INFO  : Building c2d9sA_.18.pdb
15/01/2012 22:11:20 : INFO  : Building c1h28B_.19.pdb
15/01/2012 22:11:21 : INFO  : Building c2kluA_.20.pdb
15/01/2012 22:11:22 : INFO  : Finished HH model building
15/01/2012 22:11:22 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 22:11:25 : INFO  : html domain output complete ID 'a48cec17214f211b'
15/01/2012 22:15:10 : INFO  : Run end  : Sun Jan 15 22:15:10 GMT 2012
