Phyre 2 Results for Q47556

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | Q47556
Date | Wed Jan 25 15:21:14 GMT 2012
Unique Job ID | a4424e44bbbad2b8

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2fzcb1
Top template information
Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
Confidence and coverage
Confidence: | 17.2% | Coverage: | 89%
8 residues ( 89% of your sequence) have been modelled with 17.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
Warning: 100% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | .
Sequence |  | M | T | H | D | N | K | L | Q | V
Secondary structure |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2fzcb1 |

### PDB 2fzc chain B domain 1

Region: 2 - 9
Aligned: 8
Modelled: 8
Confidence: 17.2%
Identity: 100%
Fold: Ferredoxin-like
Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
Family: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain

Phyre2

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2fzcb1 |
|  | 17.2 | 100 | Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0