HHsearch 1.5
NAME  batch____
FAM   
FILE  query
COM   //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/a42a6501ee78af32/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/a42a6501ee78af32/query.hhm 
DATE  Mon Jan 16 09:51:48 2012
LENG  35 match states, 35 columns in multiple alignment
FILT  2 out of 4 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.3 
EVD   0.4787  2.5855 
SEQ
>ss_pred
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>ss_conf
93999999999865567999999999999995379
>Consensus
mtlaxxxmxfwhdlaapixagixxxxivxwxxxrk
>batch____
MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK
>UniRef50_B7LTE2(49-83:83) Small toxic polypeptide ldrD (Modular protein) n=10 Tax=Enterobacteriaceae RepID=B7LTE2_ESCF3  E=2e-05 s/c=1.44 id=58% cov=103%
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
M 1    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1320	0	0	

T 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	2
       0	*	*	*	*	*	*	1320	0	0	

L 3    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1320	0	0	

A 4    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1320	0	0	

Q 5    *	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1320	0	0	

F 6    *	*	*	*	1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1320	0	0	

A 7    1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1320	0	0	

M 8    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1320	0	0	

I 9    1000	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1320	0	0	

F 10   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1320	0	0	

W 11   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	11
       0	*	*	*	*	*	*	1320	0	0	

H 12   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1320	0	0	

D 13   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1320	0	0	

L 14   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1320	0	0	

A 15   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1320	0	0	

A 16   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1320	0	0	

P 17   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1320	0	0	

I 18   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	18
       0	*	*	*	*	*	*	1320	0	0	

L 19   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1320	0	0	

A 20   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1320	0	0	

G 21   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1320	0	0	

I 22   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1320	0	0	

I 23   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1320	0	0	

T 24   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	24
       0	*	*	*	*	*	*	1320	0	0	

A 25   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	25
       0	*	*	*	*	*	*	1320	0	0	

A 26   1000	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1320	0	0	

I 27   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1320	0	0	

V 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	28
       0	*	*	*	*	*	*	1320	0	0	

S 29   *	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	1000	*	*	*	*	29
       0	*	*	*	*	*	*	1320	0	0	

W 30   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	30
       0	*	*	*	*	*	*	1320	0	0	

W 31   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	1000	*	31
       0	*	*	*	*	*	*	1320	0	0	

R 32   *	*	*	*	*	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	32
       0	*	*	*	*	*	*	1320	0	0	

N 33   *	*	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	*	*	*	33
       0	*	*	*	*	*	*	1320	0	0	

R 34   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	34
       0	*	*	*	*	*	*	1320	0	0	

K 35   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	35
       0	*	*	0	*	*	*	1320	0	0	

//